Query 014687
Match_columns 420
No_of_seqs 294 out of 737
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.4 1.9E-07 6.4E-12 76.7 3.8 84 2-91 3-100 (101)
2 3ogl_Q JAZ1 incomplete degron 93.8 0.034 1.2E-06 34.3 2.1 19 358-376 3-21 (21)
3 2jun_A Midline-1; B-BOX, TRIM, 93.7 0.022 7.4E-07 46.2 1.7 43 46-88 4-49 (101)
4 2d8u_A Ubiquitin ligase TRIM63 92.0 0.082 2.8E-06 39.5 2.6 46 40-91 3-49 (64)
5 2yvr_A Transcription intermedi 92.0 0.079 2.7E-06 37.9 2.3 44 42-91 3-46 (50)
6 3ogk_Q JAZ1 incomplete degron 89.6 0.1 3.5E-06 32.6 0.9 19 361-379 1-19 (22)
7 2ffw_A Midline-1; B-BOX, ring 89.5 0.13 4.3E-06 40.8 1.6 44 45-88 30-76 (78)
8 3ddt_A E3 ubiquitin-protein li 88.2 0.24 8.3E-06 35.1 2.3 41 45-91 6-47 (48)
9 2did_A Tripartite motif protei 88.0 0.32 1.1E-05 35.1 2.8 40 45-91 8-48 (53)
10 1fre_A Nuclear factor XNF7; zi 86.1 0.55 1.9E-05 32.1 3.1 27 47-74 5-31 (42)
11 2dja_A Midline-2; tripartite m 83.7 0.54 1.8E-05 36.8 2.4 43 43-91 16-59 (84)
12 2yrg_A Tripartite motif-contai 81.2 0.89 3E-05 33.8 2.6 41 44-91 13-54 (59)
13 2ffw_A Midline-1; B-BOX, ring 80.5 0.62 2.1E-05 36.7 1.6 43 2-44 30-75 (78)
14 2csv_A Tripartite motif protei 75.4 1.2 4.2E-05 34.0 1.9 39 46-91 19-57 (72)
15 2d8v_A Zinc finger FYVE domain 68.2 2.6 8.8E-05 33.0 2.2 47 43-91 6-53 (67)
16 2egm_A Tripartite motif-contai 64.8 1.3 4.4E-05 32.7 -0.1 30 46-76 19-49 (57)
17 2fc7_A ZZZ3 protein; structure 63.3 11 0.00037 30.1 5.1 51 40-91 17-74 (82)
18 1fre_A Nuclear factor XNF7; zi 57.0 5.1 0.00018 27.1 1.9 31 3-34 4-35 (42)
19 2e5r_A Dystrobrevin alpha; ZZ 54.9 9.2 0.00032 29.0 3.1 35 40-76 8-46 (63)
20 2did_A Tripartite motif protei 54.6 6.5 0.00022 28.0 2.2 41 2-49 8-49 (53)
21 2lri_C Autoimmune regulator; Z 52.4 10 0.00034 29.0 3.0 44 3-54 13-59 (66)
22 4hc9_A Trans-acting T-cell-spe 48.7 5 0.00017 34.1 0.8 74 1-74 4-89 (115)
23 2yrg_A Tripartite motif-contai 47.9 9.5 0.00032 28.1 2.2 40 3-49 15-55 (59)
24 1z60_A TFIIH basal transcripti 44.4 4.5 0.00016 30.7 -0.1 32 4-35 17-51 (59)
25 4g92_A HAPB protein; transcrip 44.3 28 0.00095 26.9 4.3 28 378-405 36-64 (64)
26 2d8u_A Ubiquitin ligase TRIM63 43.5 13 0.00044 27.2 2.3 46 3-54 9-55 (64)
27 2dja_A Midline-2; tripartite m 43.1 17 0.00058 28.0 3.1 46 3-54 19-65 (84)
28 1mm2_A MI2-beta; PHD, zinc fin 40.8 27 0.00093 25.9 3.8 25 3-35 10-34 (61)
29 1f62_A Transcription factor WS 40.3 25 0.00085 24.8 3.4 45 4-53 2-49 (51)
30 2egm_A Tripartite motif-contai 39.6 9.4 0.00032 27.9 1.0 31 3-34 19-50 (57)
31 2yvr_A Transcription intermedi 38.7 15 0.0005 25.7 1.9 40 3-48 7-46 (50)
32 2yqq_A Zinc finger HIT domain- 32.0 29 0.00099 26.0 2.6 27 45-72 12-39 (56)
33 2yql_A PHD finger protein 21A; 31.9 19 0.00064 26.2 1.5 26 2-35 9-34 (56)
34 2k0a_A PRE-mRNA-splicing facto 29.7 9.6 0.00033 32.2 -0.4 51 22-72 22-79 (109)
35 4gne_A Histone-lysine N-methyl 27.9 50 0.0017 27.5 3.7 62 3-73 16-85 (107)
36 3ddt_A E3 ubiquitin-protein li 26.8 28 0.00096 24.1 1.7 25 11-35 15-40 (48)
37 1z60_A TFIIH basal transcripti 26.1 16 0.00055 27.6 0.3 31 47-77 17-50 (59)
38 2csv_A Tripartite motif protei 25.8 26 0.00088 26.4 1.4 31 3-34 19-49 (72)
39 2pv0_B DNA (cytosine-5)-methyl 25.6 26 0.0009 35.6 1.8 72 2-74 50-124 (386)
40 1fp0_A KAP-1 corepressor; PHD 25.3 57 0.002 26.4 3.5 24 3-34 26-49 (88)
41 3qc1_A Immunoglobulin-binding 22.8 40 0.0014 31.9 2.4 19 358-376 173-191 (243)
42 1wj0_A Squamosa promoter-bindi 22.7 25 0.00084 26.8 0.8 42 27-72 10-51 (60)
43 1v6g_A Actin binding LIM prote 22.6 30 0.001 26.1 1.3 61 14-75 3-73 (81)
44 2jrp_A Putative cytoplasmic pr 22.6 52 0.0018 26.4 2.7 58 1-74 1-60 (81)
45 2jne_A Hypothetical protein YF 22.6 38 0.0013 28.3 1.9 40 1-54 31-70 (101)
46 2ro1_A Transcription intermedi 22.2 63 0.0022 29.1 3.6 45 3-55 3-50 (189)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.37 E-value=1.9e-07 Score=76.71 Aligned_cols=84 Identities=18% Similarity=0.445 Sum_probs=67.8
Q ss_pred CCCCCccCC---CCeEEEecCCCcccCcccccccccccccccccccc-c---------ccCcCCCCCceeeccCCCcccC
Q 014687 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT-L---------LCERCNSQPALVRCAEERVSLC 68 (420)
Q Consensus 2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~Rv-~---------LCd~C~s~PA~v~C~~d~asLC 68 (420)
+..|++|.+ .+|+++|..+.+.||..|...+|..+...++|..+ + .|+.++..+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 468999984 68999999999999999999999877777888865 2 3666655568899999999999
Q ss_pred ccccc-CccCCCCCCCCCcceecc
Q 014687 69 QNCDW-IGHGTSTSASSHKRQTIN 91 (420)
Q Consensus 69 ~~CD~-~~H~an~~a~rHqRvpv~ 91 (420)
..|.. ..|. .|..+||.
T Consensus 83 ~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp HHHHHHTTTS------SSCBCCCC
T ss_pred hhcCCCCCcC------CCCeecCC
Confidence 99986 4553 47666654
No 2
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=93.75 E-value=0.034 Score=34.32 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhccC.....
Q 014687 358 SASRSKAVLRYKEKKKTRK..... 376 (420)
Q Consensus 358 ~~~R~~~~~ry~eKk~~R~..... 376 (420)
+.+|.+.|+||.||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 3689999999999999873
No 3
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.74 E-value=0.022 Score=46.23 Aligned_cols=43 Identities=28% Similarity=0.571 Sum_probs=36.3
Q ss_pred cccCcCCC---CCceeeccCCCcccCcccccCccCCCCCCCCCcce
Q 014687 46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (420)
Q Consensus 46 ~LCd~C~s---~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRv 88 (420)
+.|++|.. .+|+.+|..|..+||..|....|..+....+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 57999984 57999999999999999998878766666788876
No 4
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.04 E-value=0.082 Score=39.49 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=35.6
Q ss_pred cccccccccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014687 40 KRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (420)
Q Consensus 40 ~RH~Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~ 91 (420)
.+..+..+|..+...+..+||..|...+|..|... .| ..|..+||.
T Consensus 3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 49 (64)
T 2d8u_A 3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 49 (64)
T ss_dssp CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHH
Confidence 34556677888877889999999999999999864 45 357766665
No 5
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=91.96 E-value=0.079 Score=37.86 Aligned_cols=44 Identities=23% Similarity=0.547 Sum_probs=35.3
Q ss_pred cccccccCcCCCCCceeeccCCCcccCcccccCccCCCCCCCCCcceecc
Q 014687 42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (420)
Q Consensus 42 H~Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRvpv~ 91 (420)
..|...|..+...+-.+||..|...+|..|....| ..|..+||.
T Consensus 3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ 46 (50)
T 2yvr_A 3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLE 46 (50)
T ss_dssp CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETT
T ss_pred CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHH
Confidence 45667788887788899999999999999987555 367777775
No 6
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=89.57 E-value=0.1 Score=32.56 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhccCCCC
Q 014687 361 RSKAVLRYKEKKKTRKFDK 379 (420)
Q Consensus 361 R~~~~~ry~eKk~~R~f~k 379 (420)
|...|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5678999999999987654
No 7
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=89.51 E-value=0.13 Score=40.78 Aligned_cols=44 Identities=27% Similarity=0.559 Sum_probs=35.6
Q ss_pred ccccCcCCC---CCceeeccCCCcccCcccccCccCCCCCCCCCcce
Q 014687 45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (420)
Q Consensus 45 v~LCd~C~s---~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRv 88 (420)
...|+.|.. .+|+..|..|.+++|..|-...|.......+|+.+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 467999986 56899999999999999987667766556678765
No 8
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=88.23 E-value=0.24 Score=35.07 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=30.9
Q ss_pred ccccCcCCCCCceeeccCCCcccCccccc-CccCCCCCCCCCcceecc
Q 014687 45 TLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN 91 (420)
Q Consensus 45 v~LCd~C~s~PA~v~C~~d~asLC~~CD~-~~H~an~~a~rHqRvpv~ 91 (420)
..+|......+..+||..|...+|..|.. ..| ..|..+||.
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence 34677776667889999999999999973 345 357767764
No 9
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=87.97 E-value=0.32 Score=35.08 Aligned_cols=40 Identities=20% Similarity=0.472 Sum_probs=31.7
Q ss_pred ccccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014687 45 TLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (420)
Q Consensus 45 v~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~ 91 (420)
..+|..+. .+-.+||..|...+|..|... .| ..|..+||.
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLS 48 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECC
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHH
Confidence 34687776 678899999999999999874 44 467777776
No 10
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=86.12 E-value=0.55 Score=32.10 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=22.6
Q ss_pred ccCcCCCCCceeeccCCCcccCcccccC
Q 014687 47 LCERCNSQPALVRCAEERVSLCQNCDWI 74 (420)
Q Consensus 47 LCd~C~s~PA~v~C~~d~asLC~~CD~~ 74 (420)
+|.... .+-.+||..|...+|..|...
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence 566665 567899999999999999873
No 11
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=83.72 E-value=0.54 Score=36.81 Aligned_cols=43 Identities=19% Similarity=0.502 Sum_probs=32.2
Q ss_pred ccccccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014687 43 SRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (420)
Q Consensus 43 ~Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~ 91 (420)
.+..+|..+...+-.+||..|...+|..|... .| ..|..+||.
T Consensus 16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 59 (84)
T 2dja_A 16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN 59 (84)
T ss_dssp SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHH
Confidence 34456777766678999999999999999873 44 357666665
No 12
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.20 E-value=0.89 Score=33.77 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=31.3
Q ss_pred cccccCcCCCCCceeeccCCCcccCcccccC-ccCCCCCCCCCcceecc
Q 014687 44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (420)
Q Consensus 44 Rv~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H~an~~a~rHqRvpv~ 91 (420)
+..+|..+. .+-.+||..|...+|..|... .| ..|..+||.
T Consensus 13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ 54 (59)
T 2yrg_A 13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTS 54 (59)
T ss_dssp CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECC
T ss_pred cCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHH
Confidence 334677776 568899999999999999874 34 467777775
No 13
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=80.49 E-value=0.62 Score=36.73 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=35.5
Q ss_pred CCCCCccCC---CCeEEEecCCCcccCccccccccccccccccccc
Q 014687 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR 44 (420)
Q Consensus 2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~R 44 (420)
+..||+|.. .+|+-.|....+.||..|=...|......++|.-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 368999975 6899999999999999998877876666677764
No 14
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=75.36 E-value=1.2 Score=33.96 Aligned_cols=39 Identities=18% Similarity=0.453 Sum_probs=30.6
Q ss_pred cccCcCCCCCceeeccCCCcccCcccccCccCCCCCCCCCcceecc
Q 014687 46 LLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (420)
Q Consensus 46 ~LCd~C~s~PA~v~C~~d~asLC~~CD~~~H~an~~a~rHqRvpv~ 91 (420)
.+|..+. .+-.+||..|...+|..|....| ..|..+||.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ 57 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVE 57 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHH
Confidence 4677774 67889999999999999987445 357777765
No 15
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=68.21 E-value=2.6 Score=32.97 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=38.5
Q ss_pred ccccccCcCCCCCceeeccCC-CcccCcccccCccCCCCCCCCCcceecc
Q 014687 43 SRTLLCERCNSQPALVRCAEE-RVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (420)
Q Consensus 43 ~Rv~LCd~C~s~PA~v~C~~d-~asLC~~CD~~~H~an~~a~rHqRvpv~ 91 (420)
.-.+.|-+|... |+++|..| .-..|..|-+..|.. ..-..|+.++..
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPYH 53 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECCC
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeecc
Confidence 446789999977 99999998 669999999999953 456789888764
No 16
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.82 E-value=1.3 Score=32.69 Aligned_cols=30 Identities=17% Similarity=0.477 Sum_probs=24.4
Q ss_pred cccCcCCCCCceeeccCCCcccCcccccC-cc
Q 014687 46 LLCERCNSQPALVRCAEERVSLCQNCDWI-GH 76 (420)
Q Consensus 46 ~LCd~C~s~PA~v~C~~d~asLC~~CD~~-~H 76 (420)
.+|..+. .+..+||..|...+|..|... .|
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 3577774 678899999999999999864 34
No 17
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=63.31 E-value=11 Score=30.15 Aligned_cols=51 Identities=22% Similarity=0.470 Sum_probs=33.6
Q ss_pred cccccccccCcCCCCCce---eeccCCCc----ccCcccccCccCCCCCCCCCcceecc
Q 014687 40 KRHSRTLLCERCNSQPAL---VRCAEERV----SLCQNCDWIGHGTSTSASSHKRQTIN 91 (420)
Q Consensus 40 ~RH~Rv~LCd~C~s~PA~---v~C~~d~a----sLC~~CD~~~H~an~~a~rHqRvpv~ 91 (420)
..|..+ .|+.|...|.. +.|..|.- -||+.|-..++....-...|.-++|.
T Consensus 17 ~~H~~~-~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 17 VQHVGF-KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp CEESSC-CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CeeCcC-CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 345443 79999988854 77999875 69999988754333222356555544
No 18
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=57.03 E-value=5.1 Score=27.09 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=24.0
Q ss_pred CCCCccCCCCeEEEecCCCcccCccccc-cccc
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vHs 34 (420)
.+|..=+ .+-.+||..|...+|..|-. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 4566665 46789999999999999986 4554
No 19
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.86 E-value=9.2 Score=29.00 Aligned_cols=35 Identities=37% Similarity=0.842 Sum_probs=26.7
Q ss_pred cccccccccCcCCCCCc---eeeccCCCc-ccCcccccCcc
Q 014687 40 KRHSRTLLCERCNSQPA---LVRCAEERV-SLCQNCDWIGH 76 (420)
Q Consensus 40 ~RH~Rv~LCd~C~s~PA---~v~C~~d~a-sLC~~CD~~~H 76 (420)
..|. ..|+.|...|. -+.|..|.- -||+.|-..+.
T Consensus 8 v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~ 46 (63)
T 2e5r_A 8 VFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGH 46 (63)
T ss_dssp CCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCC
T ss_pred ceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCC
Confidence 3465 67999998874 377988854 59999987764
No 20
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=54.61 E-value=6.5 Score=27.98 Aligned_cols=41 Identities=22% Similarity=0.487 Sum_probs=29.6
Q ss_pred CCCCCccCCCCeEEEecCCCcccCccccc-ccccccccccccccccccC
Q 014687 2 GYMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCE 49 (420)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vHsaN~Ls~RH~Rv~LCd 49 (420)
...|..=+ .+-.+||..|...+|..|-. .-|. .|..++|-+
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~e 49 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSG 49 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCC
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHH
Confidence 34676666 56889999999999999986 4553 365555544
No 21
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=52.44 E-value=10 Score=29.03 Aligned_cols=44 Identities=27% Similarity=0.602 Sum_probs=28.8
Q ss_pred CCCCccCCCCeEEEecCCCcccCcccccccccc---cccccccccccccCcCCCC
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA---NALSKRHSRTLLCERCNSQ 54 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsa---N~Ls~RH~Rv~LCd~C~s~ 54 (420)
..|..|++. +...+|..|++..|.. -.|...-...|.|..|...
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 468888853 4567788899888873 1344444456777777644
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=48.72 E-value=5 Score=34.12 Aligned_cols=74 Identities=20% Similarity=0.471 Sum_probs=48.2
Q ss_pred CCCCCCccCCCCeEEEecCCC-cccCcccc--ccccccccccccc-cc-------ccccCcCCCCCceeec-cCCCcccC
Q 014687 1 MGYMCDFCGDQRSIVYCRSDA-ACLCLSCD--RNVHLANALSKRH-SR-------TLLCERCNSQPALVRC-AEERVSLC 68 (420)
Q Consensus 1 M~~~Cd~C~~~~A~vyC~aD~-A~LC~~CD--~~vHsaN~Ls~RH-~R-------v~LCd~C~s~PA~v~C-~~d~asLC 68 (420)
+++.|..|+....-+|=+.+. -.||..|. .+.|..|.-..+. .| ...|..|......+|- ..+...||
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 367899999887777777654 47999999 4556554422111 11 2469999987655443 33446899
Q ss_pred cccccC
Q 014687 69 QNCDWI 74 (420)
Q Consensus 69 ~~CD~~ 74 (420)
..|-.-
T Consensus 84 NaCgl~ 89 (115)
T 4hc9_A 84 NACGLY 89 (115)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 999854
No 23
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.89 E-value=9.5 Score=28.05 Aligned_cols=40 Identities=23% Similarity=0.599 Sum_probs=28.4
Q ss_pred CCCCccCCCCeEEEecCCCcccCccccc-ccccccccccccccccccC
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCE 49 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vHsaN~Ls~RH~Rv~LCd 49 (420)
..|..-+ .+-.+||..|...+|..|-. .-|.. |..+++-+
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~~------H~~~~l~e 55 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHRG------HHTFPTSG 55 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTTT------CCEEECCS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcCCC------CcEeeHHH
Confidence 4566665 36789999999999999986 44543 55555543
No 24
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.35 E-value=4.5 Score=30.71 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=24.8
Q ss_pred CCCccCCCCe---EEEecCCCcccCcccccccccc
Q 014687 4 MCDFCGDQRS---IVYCRSDAACLCLSCDRNVHLA 35 (420)
Q Consensus 4 ~Cd~C~~~~A---~vyC~aD~A~LC~~CD~~vHsa 35 (420)
.|-.|+.... +.-|......+|.+||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 4777776532 3559999999999999999853
No 25
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=44.27 E-value=28 Score=26.94 Aligned_cols=28 Identities=39% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCccchhhhhhhhhhcCC-CCceeecCCC
Q 014687 378 DKRVRYASRKARADVRRR-VKGRFVKAGE 405 (420)
Q Consensus 378 ~kkirY~~Rk~~Ad~R~R-vkGrFvk~~~ 405 (420)
.|+.-|++|-.=|-.|+| -.|||.+..|
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 466789999999999999 6799998754
No 26
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=43.53 E-value=13 Score=27.21 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=32.8
Q ss_pred CCCCccCCCCeEEEecCCCcccCccccc-ccccccccccccccccccCcCCCC
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCNSQ 54 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vHsaN~Ls~RH~Rv~LCd~C~s~ 54 (420)
..|..=...+-.+||..|...+|..|-. .-|. .|..++|-+.....
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~~ 55 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQGQ 55 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSSC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHHH
Confidence 4566664456789999999999999975 3564 37777776655443
No 27
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=43.09 E-value=17 Score=28.04 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=32.8
Q ss_pred CCCCccCCCCeEEEecCCCcccCccccc-ccccccccccccccccccCcCCCC
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCNSQ 54 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vHsaN~Ls~RH~Rv~LCd~C~s~ 54 (420)
..|..=...+-.+||..|...+|..|-. .-|. .|..+++-+.....
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~~ 65 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEKL 65 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHHH
Confidence 3566654456889999999999999986 4553 37777776655433
No 28
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=40.81 E-value=27 Score=25.87 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=17.9
Q ss_pred CCCCccCCCCeEEEecCCCcccCcccccccccc
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsa 35 (420)
..|..|+.. +...+|..|++..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~ 34 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIH 34 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSS
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHccc
Confidence 467888753 4567788899888863
No 29
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=40.30 E-value=25 Score=24.79 Aligned_cols=45 Identities=27% Similarity=0.618 Sum_probs=27.9
Q ss_pred CCCccCCCCeEEEecCCCcccCcccccccccc--c-ccccccccccccCcCCC
Q 014687 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA--N-ALSKRHSRTLLCERCNS 53 (420)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsa--N-~Ls~RH~Rv~LCd~C~s 53 (420)
.|..|+... ..+...+|..|++..|.. + .|...-...|.|..|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888753 234567788999988863 1 23333344566666653
No 30
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.59 E-value=9.4 Score=27.93 Aligned_cols=31 Identities=19% Similarity=0.576 Sum_probs=24.2
Q ss_pred CCCCccCCCCeEEEecCCCcccCccccc-cccc
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vHs 34 (420)
..|..=+ ..-.+||..|.+.+|..|-. .-|.
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 4566664 46889999999999999985 4454
No 31
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=38.74 E-value=15 Score=25.70 Aligned_cols=40 Identities=23% Similarity=0.521 Sum_probs=28.4
Q ss_pred CCCCccCCCCeEEEecCCCcccCccccccccccccccccccccccc
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLC 48 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~Rv~LC 48 (420)
..|..=...+-.+||..|...+|..|-..-|. .|..++|-
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ 46 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE 46 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence 45666644567899999999999999765554 35555543
No 32
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.03 E-value=29 Score=26.03 Aligned_cols=27 Identities=33% Similarity=0.704 Sum_probs=22.8
Q ss_pred ccccCcCCCCCceeeccCCCcccCc-ccc
Q 014687 45 TLLCERCNSQPALVRCAEERVSLCQ-NCD 72 (420)
Q Consensus 45 v~LCd~C~s~PA~v~C~~d~asLC~-~CD 72 (420)
..+|.+|.. ++.+.|..|.+..|. .|-
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHH
Confidence 347999999 999999999999986 453
No 33
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.87 E-value=19 Score=26.20 Aligned_cols=26 Identities=27% Similarity=0.685 Sum_probs=18.1
Q ss_pred CCCCCccCCCCeEEEecCCCcccCcccccccccc
Q 014687 2 GYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (420)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsa 35 (420)
...|..|+.. +...+|..|++..|..
T Consensus 9 ~~~C~vC~~~--------g~ll~Cd~C~~~~H~~ 34 (56)
T 2yql_A 9 EDFCSVCRKS--------GQLLMCDTCSRVYHLD 34 (56)
T ss_dssp CCSCSSSCCS--------SCCEECSSSSCEECSS
T ss_pred CCCCccCCCC--------CeEEEcCCCCcceECc
Confidence 3568888874 3556677888877763
No 34
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.66 E-value=9.6 Score=32.23 Aligned_cols=51 Identities=20% Similarity=0.511 Sum_probs=25.6
Q ss_pred cccCcccccccccccccccccccccccCcCCCCCceeeccCCC-------cccCcccc
Q 014687 22 ACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER-------VSLCQNCD 72 (420)
Q Consensus 22 A~LC~~CD~~vHsaN~Ls~RH~Rv~LCd~C~s~PA~v~C~~d~-------asLC~~CD 72 (420)
+.||..||.+--.-...++-...+.+|+.|....-.-+|..|. |..|..|-
T Consensus 22 G~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 22 GLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp CEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred hhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhh
Confidence 4455555543322222233334566777776555444444443 56677775
No 35
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=27.91 E-value=50 Score=27.52 Aligned_cols=62 Identities=26% Similarity=0.528 Sum_probs=37.8
Q ss_pred CCCCccCCCCeEEEecCCCcccCc--cccccccccc-cccccccccccc-----CcCCCCCceeeccCCCcccCccccc
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCL--SCDRNVHLAN-ALSKRHSRTLLC-----ERCNSQPALVRCAEERVSLCQNCDW 73 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~--~CD~~vHsaN-~Ls~RH~Rv~LC-----d~C~s~PA~v~C~~d~asLC~~CD~ 73 (420)
..|..|+..-- ..+|. .|+.-.|..= .|...-.-.|.| ..|.. ++.++|..|..++|..|-.
T Consensus 16 ~~C~~C~~~G~--------ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k-~~~~~C~~Cp~sfC~~c~~ 85 (107)
T 4gne_A 16 DYCFQCGDGGE--------LVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSS-AAVSFCEFCPHSFCKDHEK 85 (107)
T ss_dssp SSCTTTCCCSE--------EEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCS-BCCEECSSSSCEECTTTCT
T ss_pred CCCCcCCCCCc--------EeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCC-CCCcCcCCCCcchhhhccC
Confidence 46788875433 44566 6887666531 122222233444 46664 4669999999999999863
No 36
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=26.83 E-value=28 Score=24.09 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=19.9
Q ss_pred CCeEEEecCCCcccCcccc-cccccc
Q 014687 11 QRSIVYCRSDAACLCLSCD-RNVHLA 35 (420)
Q Consensus 11 ~~A~vyC~aD~A~LC~~CD-~~vHsa 35 (420)
.+-.+||..|...+|..|- ..-|..
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred ccccEEcCCCCeeEcccccCCCcCCC
Confidence 4577999999999999996 345654
No 37
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.12 E-value=16 Score=27.64 Aligned_cols=31 Identities=26% Similarity=0.630 Sum_probs=23.8
Q ss_pred ccCcCCCCC---ceeeccCCCcccCcccccCccC
Q 014687 47 LCERCNSQP---ALVRCAEERVSLCQNCDWIGHG 77 (420)
Q Consensus 47 LCd~C~s~P---A~v~C~~d~asLC~~CD~~~H~ 77 (420)
.|-.|...- ..+.|..|...+|..||.=+|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHh
Confidence 366665442 2477999999999999999986
No 38
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=25.79 E-value=26 Score=26.38 Aligned_cols=31 Identities=26% Similarity=0.735 Sum_probs=24.2
Q ss_pred CCCCccCCCCeEEEecCCCcccCccccccccc
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHL 34 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHs 34 (420)
..|..=+ .+-.+||..|...+|..|-..-|.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~ 49 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK 49 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC
Confidence 4566664 567899999999999999765554
No 39
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.58 E-value=26 Score=35.60 Aligned_cols=72 Identities=19% Similarity=0.355 Sum_probs=47.0
Q ss_pred CCCCCccCCCCeEEEecCC-CcccCcccccccccccccccccccccccCcCCCCCceeecc--CCCcccCcccccC
Q 014687 2 GYMCDFCGDQRSIVYCRSD-AACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCA--EERVSLCQNCDWI 74 (420)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD-~A~LC~~CD~~vHsaN~Ls~RH~Rv~LCd~C~s~PA~v~C~--~d~asLC~~CD~~ 74 (420)
+..|-.|++. ..++.|-- .+.+|..|-...+..+...-.----..|-.|..--..+-|. .|.-.+|..|...
T Consensus 50 e~~C~~CG~~-~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~ 124 (386)
T 2pv0_B 50 EDICICCGSL-QVHTQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDS 124 (386)
T ss_dssp GGSBTTTCCS-CCCSBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHH
T ss_pred cceeCCCCCc-CccccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHH
Confidence 4467788875 33555532 57778888777776544322222234577888776677788 8888899999744
No 40
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.25 E-value=57 Score=26.40 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=16.4
Q ss_pred CCCCccCCCCeEEEecCCCcccCccccccccc
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHL 34 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHs 34 (420)
..|..|+..- ...+|..|++..|.
T Consensus 26 ~~C~vC~~~g--------~LL~CD~C~~~fH~ 49 (88)
T 1fp0_A 26 TICRVCQKPG--------DLVMCNQCEFCFHL 49 (88)
T ss_dssp SCCSSSCSSS--------CCEECTTSSCEECT
T ss_pred CcCcCcCCCC--------CEEECCCCCCceec
Confidence 4678887642 45567788887775
No 41
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=22.81 E-value=40 Score=31.93 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 014687 358 SASRSKAVLRYKEKKKTRK 376 (420)
Q Consensus 358 ~~~R~~~~~ry~eKk~~R~ 376 (420)
...|+++|.|||++|.-+.
T Consensus 173 a~rR~~KI~rfK~eKeLe~ 191 (243)
T 3qc1_A 173 ASQRQAKIERYKQKKEVEH 191 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4689999999999986553
No 42
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=22.74 E-value=25 Score=26.79 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=32.3
Q ss_pred ccccccccccccccccccccccCcCCCCCceeeccCCCcccCcccc
Q 014687 27 SCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCD 72 (420)
Q Consensus 27 ~CD~~vHsaN~Ls~RH~Rv~LCd~C~s~PA~v~C~~d~asLC~~CD 72 (420)
.|++.+-.+ -.-|.|..+|+.+..+|+++. .+-..-+|+.|-
T Consensus 10 gC~~dl~~~---k~Y~rR~rvCe~H~ka~~v~~-~G~~~RFCQQCs 51 (60)
T 1wj0_A 10 NCGADLSKV---KDYHRRHKVCEIHSKATTALV-GGIMQRFCQQCS 51 (60)
T ss_dssp TCCCEETSC---CSSTTTTTCCHHHHTCSCEEE-TTEEECCCSSSC
T ss_pred CCCcChhHh---HHHhhccccChhHcCCCEEEE-CCEEEehhhhcc
Confidence 477766554 356788899999999988776 555678999995
No 43
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.65 E-value=30 Score=26.12 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=37.2
Q ss_pred EEEecCC----CcccCcccccccccccccc----cccccccccCcCCCCCc--eeeccCCCcccCcccccCc
Q 014687 14 IVYCRSD----AACLCLSCDRNVHLANALS----KRHSRTLLCERCNSQPA--LVRCAEERVSLCQNCDWIG 75 (420)
Q Consensus 14 ~vyC~aD----~A~LC~~CD~~vHsaN~Ls----~RH~Rv~LCd~C~s~PA--~v~C~~d~asLC~~CD~~~ 75 (420)
.+||+.| -+..|..|+..|.. ..|. .-|..-..|..|...-. ..+-......+|..|....
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 4688887 35579999998873 2332 23555566788875532 2333344445788886543
No 44
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.63 E-value=52 Score=26.44 Aligned_cols=58 Identities=19% Similarity=0.426 Sum_probs=34.4
Q ss_pred CCCCCCccCCCCeEEEecCCCcccCcccccccccccccccccccccccCcCCCCCceeeccCCC--cccCcccccC
Q 014687 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER--VSLCQNCDWI 74 (420)
Q Consensus 1 M~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~Rv~LCd~C~s~PA~v~C~~d~--asLC~~CD~~ 74 (420)
|...|-.|+..... ...-..|..|+..+- +..+|..|+..-.. |.+|. ..+|+.|..-
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~~----------~~afCPeCgq~Le~--lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDFS----------LQALCPDCRQPLQV--LKACGAVDYFCQNGHGL 60 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEEE----------EEEECSSSCSCCCE--EEETTEEEECCTTTTCC
T ss_pred CCCCCCCCCCcccc----CCCceECccccccCC----------CcccCcchhhHHHH--HHhcCCcCeeeccCCCE
Confidence 77888888876442 233445888886332 22377777744333 44442 4788888543
No 45
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.61 E-value=38 Score=28.32 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCCCCCccCCCCeEEEecCCCcccCcccccccccccccccccccccccCcCCCC
Q 014687 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQ 54 (420)
Q Consensus 1 M~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsaN~Ls~RH~Rv~LCd~C~s~ 54 (420)
|...|..|+... .+ .+....|..|+.. =.+..+|.-|...
T Consensus 31 M~~~CP~Cq~eL--~~--~g~~~hC~~C~~~----------f~~~a~CPdC~q~ 70 (101)
T 2jne_A 31 MELHCPQCQHVL--DQ--DNGHARCRSCGEF----------IEMKALCPDCHQP 70 (101)
T ss_dssp CCCBCSSSCSBE--EE--ETTEEEETTTCCE----------EEEEEECTTTCSB
T ss_pred ccccCccCCCcc--ee--cCCEEECccccch----------hhccccCcchhhH
Confidence 667788887642 22 2334447777752 2345667777744
No 46
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=22.19 E-value=63 Score=29.07 Aligned_cols=45 Identities=24% Similarity=0.578 Sum_probs=28.0
Q ss_pred CCCCccCCCCeEEEecCCCcccCcccccccccc--c-ccccccccccccCcCCCCC
Q 014687 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA--N-ALSKRHSRTLLCERCNSQP 55 (420)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vHsa--N-~Ls~RH~Rv~LCd~C~s~P 55 (420)
..|..|+.. +.-.+|..|++..|.. . .|.....-.|.|..|...+
T Consensus 3 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP--------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC--------SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC--------CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 568888864 3566788999888863 1 2233333345677776553
Done!