Query 014688
Match_columns 420
No_of_seqs 218 out of 1637
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 5.7E-53 1.2E-57 415.0 36.1 309 106-415 5-314 (319)
2 TIGR00832 acr3 arsenical-resis 100.0 5.3E-44 1.2E-48 358.2 32.5 287 108-394 4-317 (328)
3 TIGR00841 bass bile acid trans 100.0 2.7E-42 5.9E-47 340.1 30.8 271 135-409 4-279 (286)
4 PF13593 DUF4137: SBF-like CPA 100.0 1E-37 2.2E-42 311.1 32.8 294 114-407 1-313 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 9.5E-32 2.1E-36 264.2 32.1 291 99-392 6-326 (342)
6 PF01758 SBF: Sodium Bile acid 100.0 4.8E-29 1E-33 231.3 18.2 178 143-320 1-184 (187)
7 KOG2718 Na+-bile acid cotransp 100.0 2.1E-29 4.7E-34 253.1 13.4 280 114-393 86-368 (371)
8 TIGR00946 2a69 he Auxin Efflux 99.2 9.6E-10 2.1E-14 110.1 16.3 143 107-252 175-320 (321)
9 KOG4821 Predicted Na+-dependen 99.1 7.4E-11 1.6E-15 109.8 5.5 183 103-288 11-219 (287)
10 PRK09903 putative transporter 99.1 2.2E-09 4.7E-14 107.4 15.7 143 106-252 165-310 (314)
11 COG0679 Predicted permeases [G 98.9 5E-08 1.1E-12 97.7 16.2 144 108-253 162-308 (311)
12 PF03547 Mem_trans: Membrane t 98.7 4.5E-07 9.7E-12 92.6 14.8 141 108-249 238-385 (385)
13 KOG2718 Na+-bile acid cotransp 98.3 9.6E-07 2.1E-11 89.8 7.7 227 147-379 51-286 (371)
14 PRK12460 2-keto-3-deoxyglucona 98.3 6.3E-05 1.4E-09 75.0 18.5 277 114-409 13-307 (312)
15 PF03812 KdgT: 2-keto-3-deoxyg 98.1 0.00061 1.3E-08 67.8 21.8 182 102-296 1-198 (314)
16 PF05145 AmoA: Putative ammoni 97.6 0.11 2.3E-06 52.5 27.5 133 117-254 3-136 (318)
17 COG3180 AbrB Putative ammonia 97.5 0.13 2.9E-06 52.3 26.6 108 143-254 61-169 (352)
18 TIGR00793 kdgT 2-keto-3-deoxyg 97.4 0.0043 9.3E-08 61.6 14.8 170 114-296 13-198 (314)
19 PRK03562 glutathione-regulated 97.4 0.17 3.8E-06 55.6 28.9 109 115-228 31-144 (621)
20 COG0475 KefB Kef-type K+ trans 97.4 0.24 5.1E-06 51.5 29.3 160 115-279 32-203 (397)
21 PRK05274 2-keto-3-deoxyglucona 97.2 0.052 1.1E-06 55.0 20.5 234 115-367 16-268 (326)
22 PF03601 Cons_hypoth698: Conse 96.9 0.1 2.2E-06 52.4 19.3 135 114-252 27-169 (305)
23 PRK03659 glutathione-regulated 96.9 0.89 1.9E-05 49.8 31.2 104 115-223 31-139 (601)
24 TIGR03082 Gneg_AbrB_dup membra 96.7 0.082 1.8E-06 47.8 15.1 133 114-251 22-155 (156)
25 TIGR00932 2a37 transporter, mo 96.4 1 2.2E-05 43.8 22.5 169 115-291 18-196 (273)
26 PF03547 Mem_trans: Membrane t 96.4 0.098 2.1E-06 53.4 15.1 107 271-381 8-121 (385)
27 PRK10669 putative cation:proto 96.3 2.1 4.6E-05 46.3 29.2 80 115-198 32-114 (558)
28 PLN03159 cation/H(+) antiporte 96.2 3.1 6.6E-05 47.5 26.7 51 140-194 106-157 (832)
29 PRK05326 potassium/proton anti 96.0 3 6.6E-05 45.2 31.1 53 115-168 32-89 (562)
30 TIGR00698 conserved hypothetic 95.3 1.3 2.8E-05 45.2 17.5 135 115-253 33-176 (335)
31 COG2855 Predicted membrane pro 95.0 0.96 2.1E-05 45.9 15.4 134 115-252 39-178 (334)
32 TIGR00844 c_cpa1 na(+)/h(+) an 95.0 3.5 7.5E-05 46.6 21.1 57 114-170 39-103 (810)
33 PRK12460 2-keto-3-deoxyglucona 94.8 0.3 6.4E-06 49.1 11.1 132 116-253 169-304 (312)
34 TIGR00946 2a69 he Auxin Efflux 94.7 0.93 2E-05 45.4 14.6 109 270-381 11-127 (321)
35 PF04172 LrgB: LrgB-like famil 94.5 0.99 2.1E-05 43.2 13.6 91 160-252 68-158 (215)
36 PRK09903 putative transporter 94.5 1.4 2.9E-05 44.2 15.3 111 267-381 7-124 (314)
37 PF05145 AmoA: Putative ammoni 94.3 1.7 3.7E-05 43.9 15.5 109 141-253 205-314 (318)
38 TIGR00659 conserved hypothetic 94.2 1.2 2.5E-05 43.0 13.3 89 159-252 77-168 (226)
39 PRK04288 antiholin-like protei 93.9 2.1 4.6E-05 41.4 14.5 87 161-252 85-174 (232)
40 COG4651 RosB Kef-type K+ trans 92.9 12 0.00025 37.9 23.9 131 116-252 33-175 (408)
41 PRK10711 hypothetical protein; 92.7 1.2 2.7E-05 43.0 10.7 88 160-252 79-169 (231)
42 COG0679 Predicted permeases [G 92.5 4.5 9.7E-05 40.6 15.1 68 328-395 67-137 (311)
43 COG1346 LrgB Putative effector 92.0 7.7 0.00017 37.4 15.1 88 160-252 81-171 (230)
44 TIGR00831 a_cpa1 Na+/H+ antipo 91.4 24 0.00051 38.1 23.9 51 116-168 25-78 (525)
45 COG0786 GltS Na+/glutamate sym 91.1 20 0.00044 37.3 17.9 136 115-252 35-184 (404)
46 PF03977 OAD_beta: Na+-transpo 89.7 26 0.00056 35.8 18.9 101 148-254 74-175 (360)
47 COG3180 AbrB Putative ammonia 89.6 14 0.0003 38.0 15.2 109 141-253 238-347 (352)
48 PRK15086 ethanolamine utilizat 89.3 29 0.00063 35.8 23.4 32 257-288 162-193 (372)
49 PF03956 DUF340: Membrane prot 87.6 25 0.00054 33.0 16.0 129 118-251 3-137 (191)
50 PF03601 Cons_hypoth698: Conse 85.9 5 0.00011 40.4 9.5 98 271-374 28-134 (305)
51 PF03812 KdgT: 2-keto-3-deoxyg 85.1 5.6 0.00012 40.1 9.2 70 121-194 179-248 (314)
52 PRK05274 2-keto-3-deoxyglucona 85.0 3 6.5E-05 42.4 7.4 130 118-252 178-311 (326)
53 PF00999 Na_H_Exchanger: Sodiu 85.0 0.087 1.9E-06 53.6 -3.7 162 116-283 23-197 (380)
54 TIGR03136 malonate_biotin Na+- 84.9 52 0.0011 34.1 18.5 101 148-254 110-212 (399)
55 TIGR00793 kdgT 2-keto-3-deoxyg 82.4 8.6 0.00019 38.7 9.2 44 121-165 179-222 (314)
56 PRK03562 glutathione-regulated 81.3 43 0.00093 37.0 15.2 102 143-251 271-378 (621)
57 PF06826 Asp-Al_Ex: Predicted 80.8 44 0.00095 30.7 12.8 60 318-377 77-136 (169)
58 TIGR03802 Asp_Ala_antiprt aspa 80.8 29 0.00062 37.9 13.4 88 119-211 41-129 (562)
59 PRK09796 PTS system cellobiose 79.6 41 0.00088 36.0 13.8 33 180-212 158-191 (472)
60 PRK03659 glutathione-regulated 79.5 60 0.0013 35.7 15.5 104 142-251 267-375 (601)
61 PF06826 Asp-Al_Ex: Predicted 78.6 54 0.0012 30.1 13.7 88 118-210 28-125 (169)
62 COG1970 MscL Large-conductance 77.4 13 0.00027 32.7 7.5 89 102-194 1-94 (130)
63 PRK10669 putative cation:proto 76.1 92 0.002 33.7 15.7 103 143-251 279-386 (558)
64 TIGR03802 Asp_Ala_antiprt aspa 75.1 67 0.0014 35.1 14.2 102 144-249 452-559 (562)
65 TIGR01109 Na_pump_decarbB sodi 75.1 1E+02 0.0022 31.5 16.6 100 148-253 68-174 (354)
66 PRK04972 putative transporter; 74.4 85 0.0018 34.3 14.8 88 120-212 44-132 (558)
67 PRK09586 murP PTS system N-ace 72.2 1E+02 0.0022 33.1 14.4 48 360-409 313-361 (476)
68 PRK15477 oxaloacetate decarbox 72.1 1.3E+02 0.0028 31.3 17.1 99 149-253 140-245 (433)
69 PRK15476 oxaloacetate decarbox 71.8 1.3E+02 0.0029 31.3 17.1 99 149-253 140-245 (433)
70 PRK15475 oxaloacetate decarbox 71.3 1.4E+02 0.0029 31.2 17.1 99 149-253 140-245 (433)
71 PRK03818 putative transporter; 70.9 1.1E+02 0.0023 33.5 14.5 93 117-210 34-131 (552)
72 PF05982 DUF897: Domain of unk 70.3 40 0.00086 34.3 10.2 130 100-235 163-303 (327)
73 PF03616 Glt_symporter: Sodium 68.1 1.5E+02 0.0033 30.5 26.1 182 105-287 22-241 (368)
74 PF03956 DUF340: Membrane prot 67.9 70 0.0015 30.0 10.8 131 274-407 3-136 (191)
75 PRK04972 putative transporter; 66.7 57 0.0012 35.6 11.4 87 317-405 465-557 (558)
76 TIGR01625 YidE_YbjL_dupl AspT/ 66.6 92 0.002 28.2 11.0 105 118-224 26-139 (154)
77 PRK03818 putative transporter; 66.6 1.4E+02 0.003 32.6 14.3 106 143-250 436-547 (552)
78 COG2855 Predicted membrane pro 66.0 30 0.00066 35.3 8.4 37 318-354 86-123 (334)
79 TIGR00840 b_cpa1 sodium/hydrog 64.1 2.3E+02 0.0049 31.1 20.6 76 117-192 39-120 (559)
80 KOG2722 Predicted membrane pro 63.3 10 0.00022 39.1 4.5 144 106-251 240-402 (408)
81 COG3329 Predicted permease [Ge 63.1 35 0.00077 34.5 8.1 89 102-196 205-302 (372)
82 PF05982 DUF897: Domain of unk 61.9 1.9E+02 0.0041 29.5 21.1 230 119-357 5-269 (327)
83 TIGR00698 conserved hypothetic 59.2 62 0.0013 33.1 9.4 53 320-372 84-138 (335)
84 PRK09824 PTS system beta-gluco 56.6 3.2E+02 0.007 30.4 23.1 126 272-408 218-350 (627)
85 PF05684 DUF819: Protein of un 54.5 2.7E+02 0.0058 28.9 29.3 132 118-251 30-167 (378)
86 COG2431 Predicted membrane pro 54.4 2.4E+02 0.0052 28.3 15.9 72 116-190 109-182 (297)
87 PLN03159 cation/H(+) antiporte 52.8 2.2E+02 0.0047 32.8 13.3 123 123-252 299-436 (832)
88 PF01943 Polysacc_synt: Polysa 51.8 2E+02 0.0043 26.5 15.5 63 226-290 4-68 (273)
89 PRK11007 PTS system trehalose( 47.9 3.8E+02 0.0083 28.8 13.8 33 180-212 168-201 (473)
90 PRK01061 Na(+)-translocating N 47.5 2.8E+02 0.0061 27.1 12.7 26 276-301 105-130 (244)
91 PF07760 DUF1616: Protein of u 46.0 1.4E+02 0.0031 29.5 9.4 34 380-414 82-115 (287)
92 PRK12456 Na(+)-translocating N 45.8 2.7E+02 0.0059 26.4 11.7 25 276-300 93-117 (199)
93 COG1883 OadB Na+-transporting 45.7 1.8E+02 0.0038 29.5 9.6 99 149-253 90-189 (375)
94 PRK02830 Na(+)-translocating N 45.1 2.8E+02 0.0061 26.4 13.0 73 229-301 41-121 (202)
95 COG1346 LrgB Putative effector 44.9 2.3E+02 0.005 27.5 10.1 93 312-406 78-172 (230)
96 PRK13952 mscL large-conductanc 44.8 1.5E+02 0.0032 26.6 8.3 89 102-194 1-109 (142)
97 TIGR00844 c_cpa1 na(+)/h(+) an 43.9 2.2E+02 0.0047 32.7 11.2 81 144-224 299-382 (810)
98 PRK10711 hypothetical protein; 42.4 3.3E+02 0.0071 26.4 13.3 86 312-401 76-165 (231)
99 TIGR00832 acr3 arsenical-resis 39.9 1.7E+02 0.0036 29.7 8.9 58 175-232 251-308 (328)
100 PF06181 DUF989: Protein of un 38.3 4.3E+02 0.0094 26.6 12.0 103 180-289 157-274 (300)
101 PF05684 DUF819: Protein of un 37.6 4.9E+02 0.011 27.0 13.4 119 117-242 242-362 (378)
102 TIGR00659 conserved hypothetic 36.7 4E+02 0.0087 25.8 13.7 85 313-401 76-164 (226)
103 PF03616 Glt_symporter: Sodium 36.5 5E+02 0.011 26.8 15.9 78 333-410 102-187 (368)
104 PF11120 DUF2636: Protein of u 36.0 1.3E+02 0.0028 23.2 5.6 34 262-295 4-37 (62)
105 PRK01663 C4-dicarboxylate tran 34.4 5.8E+02 0.013 26.9 21.9 27 112-138 9-35 (428)
106 KOG1307 K+-dependent Ca2+/Na+ 33.5 1.2E+02 0.0026 32.5 6.8 129 171-308 424-570 (588)
107 PF04172 LrgB: LrgB-like famil 33.1 4.4E+02 0.0096 25.2 13.6 85 313-401 66-154 (215)
108 TIGR01940 nqrE NADH:ubiquinone 31.9 4.5E+02 0.0098 24.9 12.9 25 277-301 96-120 (200)
109 PRK04288 antiholin-like protei 31.1 5E+02 0.011 25.2 13.9 86 312-401 81-170 (232)
110 COG0475 KefB Kef-type K+ trans 30.2 6.4E+02 0.014 26.1 13.7 78 144-225 277-354 (397)
111 PRK05326 potassium/proton anti 29.2 5.6E+02 0.012 27.8 11.4 106 143-252 277-390 (562)
112 TIGR00927 2A1904 K+-dependent 28.8 1.4E+02 0.0031 34.8 6.8 148 167-320 929-1090(1096)
113 COG2223 NarK Nitrate/nitrite t 28.0 5.8E+02 0.013 27.0 10.7 30 267-296 50-79 (417)
114 KOG2722 Predicted membrane pro 27.5 1.5E+02 0.0033 30.8 6.2 47 331-377 82-132 (408)
115 PRK00567 mscL large-conductanc 27.4 1.8E+02 0.0039 25.8 5.9 86 105-194 2-97 (134)
116 TIGR01625 YidE_YbjL_dupl AspT/ 26.9 4.7E+02 0.01 23.6 9.2 35 340-376 100-136 (154)
117 PRK11404 putative PTS system 26.6 8.3E+02 0.018 26.3 12.2 20 182-201 187-206 (482)
118 TIGR00851 mtlA PTS system, man 26.6 7E+02 0.015 25.4 13.1 24 272-295 93-116 (338)
119 PRK13954 mscL large-conductanc 26.4 2.5E+02 0.0055 24.4 6.5 86 105-194 2-87 (119)
120 COG2985 Predicted permease [Ge 26.1 7.5E+02 0.016 26.9 11.1 106 144-250 63-181 (544)
121 PF02990 EMP70: Endomembrane p 24.1 6.5E+02 0.014 27.2 10.7 111 173-283 267-391 (521)
122 PRK13953 mscL large-conductanc 23.9 3.9E+02 0.0085 23.4 7.3 86 105-194 2-90 (125)
123 PF13955 Fst_toxin: Toxin Fst, 23.8 1.3E+02 0.0028 18.2 2.9 15 271-285 3-17 (21)
124 COG1301 GltP Na+/H+-dicarboxyl 23.2 9E+02 0.02 25.5 17.9 27 112-138 8-36 (415)
125 COG3763 Uncharacterized protei 23.1 85 0.0018 24.8 2.7 19 330-348 9-27 (71)
126 PRK09292 Na(+)-translocating N 22.3 6.9E+02 0.015 23.9 12.5 25 277-301 85-109 (209)
127 PRK13955 mscL large-conductanc 21.5 3.8E+02 0.0082 23.7 6.7 86 105-194 2-90 (130)
128 PRK13027 C4-dicarboxylate tran 21.4 9.6E+02 0.021 25.2 21.0 31 107-137 3-33 (421)
129 PRK15083 PTS system mannitol-s 21.1 8.7E+02 0.019 27.0 11.2 27 180-206 58-85 (639)
130 PRK04949 putative sulfate tran 20.4 8E+02 0.017 23.9 11.4 19 157-175 191-209 (251)
131 TIGR03082 Gneg_AbrB_dup membra 20.2 2.8E+02 0.006 24.8 6.0 27 327-353 79-106 (156)
132 TIGR01992 PTS-IIBC-Tre PTS sys 20.1 1.1E+03 0.023 25.2 13.3 47 360-408 317-364 (462)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=5.7e-53 Score=415.03 Aligned_cols=309 Identities=36% Similarity=0.583 Sum_probs=288.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHH
Q 014688 106 EQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPM 185 (420)
Q Consensus 106 ~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Pl 185 (420)
++...+....+++|+++...++...|+.+.|++ .+++++++++||.+|++++.+|+++.++|||.+..++.+||++||+
T Consensus 5 ~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPl 83 (319)
T COG0385 5 RFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLG-SAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPL 83 (319)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHhccccchhhh-HHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 344455577899999999999999999999997 6889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccChHHHH
Q 014688 186 LGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA 265 (420)
Q Consensus 186 la~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G~~v~id~~~l~ 265 (420)
++|++++++++||+++.|+++++|||+|+.||++|+++|||+++|+.++.+||+++++++|+++.+++|+.+++|.++++
T Consensus 84 la~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~ 163 (319)
T COG0385 84 LALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMF 163 (319)
T ss_pred HHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 014688 266 ISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWL 345 (420)
Q Consensus 266 ~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll 345 (420)
+++++.+++|+++|+++|++.|++.++.++..+.++...+.+++....+.+.+........+...+++++.++|.+||+.
T Consensus 164 ~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ 243 (319)
T COG0385 164 LSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFG 243 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888887777777777777777777778888889999999999999
Q ss_pred hhc-CCCccCcceehhhhhhchHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 014688 346 SKI-SFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDDK 415 (420)
Q Consensus 346 ~r~-~l~~~~~~tlsi~~G~rNs~Lal~lA~~~F~~pl~avP~~v~~~~q~l~gs~la~~wr~~~~~~~~~ 415 (420)
+|+ |+++++++|+++|+|+||.++|.++|..+|++|.+++|.++|+++|++.+++++.+|+||+.+..++
T Consensus 244 ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~~~~~~~ 314 (319)
T COG0385 244 ARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRILKAAEK 314 (319)
T ss_pred HHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999 9999999999999999999999999999765599999999999999999999999999986554443
No 2
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=5.3e-44 Score=358.24 Aligned_cols=287 Identities=16% Similarity=0.205 Sum_probs=243.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhhhhhHh-------HHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHH
Q 014688 108 IIEILTTLFPVWVILGTIIGIYKPSAVTWLETD-------LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY 180 (420)
Q Consensus 108 ~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~-------~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~ 180 (420)
+++++..++..++++|+++|.+.|+.+.|++.. ...+.++++||++|++++++|+++.+||||.+..++..||
T Consensus 4 ~~~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qf 83 (328)
T TIGR00832 4 LERYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINW 83 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHH
Confidence 334457788888888999999999998887531 1334677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q 014688 181 LIKPMLGFVIAMTL-KLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG----- 254 (420)
Q Consensus 181 vl~Plla~~l~~~~-~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G----- 254 (420)
+++|+++|++++++ +++|+++.|+++++|||||.+||+||+++|||+++|+.+|.++|+++++++|++++++.|
T Consensus 84 vi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~~~ 163 (328)
T TIGR00832 84 IIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIW 163 (328)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999975 899999999999999999999999999999999999999999999999999999998876
Q ss_pred ---CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HH-HHhhhhhHHHHHHHHHHHHHHHhhhhhHHhhhhh
Q 014688 255 ---QLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKF-----TS-KIISVTPLIGVILTTLLCASPIGQVSAVLKTQGA 325 (420)
Q Consensus 255 ---~~v~id~~~l~~~ll~~VllPlllG~llr~~~p~~-----~~-ri~~~~~~is~l~lill~~~~~a~~~~~l~~~~~ 325 (420)
+.+++|..+++.+++.++++|+++|+++|++.+++ .+ |..+..+.++.+.+..+++...+.+.+.+.+...
T Consensus 164 ~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~ 243 (328)
T TIGR00832 164 LGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPL 243 (328)
T ss_pred cccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 45789999999999999999999999999999953 33 5666666666666656555556666666655543
Q ss_pred h---HHHHHHHHHHHHHHHHHHHhhc-CCCccCcceehhhhhhchHHHHHHHHHHhcCCcch-HHHHHHHHHHH
Q 014688 326 Q---LIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQSSALGFLLAQKHFTNPLV-AVPSAVSVVCM 394 (420)
Q Consensus 326 ~---ill~~~ll~~~~f~lG~ll~r~-~l~~~~~~tlsi~~G~rNs~Lal~lA~~~F~~pl~-avP~~v~~~~q 394 (420)
. +..++++++.++|.+||+++|. |+++++++|+++|+|+||+++|+.+|.++|+++.. +.+.++..+.|
T Consensus 244 ~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e 317 (328)
T TIGR00832 244 DIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGPLIE 317 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhe
Confidence 3 3346778999999999999999 99999999999999999999999999999987544 44444444444
No 3
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=2.7e-42 Score=340.07 Aligned_cols=271 Identities=44% Similarity=0.637 Sum_probs=247.5
Q ss_pred hhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhh
Q 014688 135 TWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ 214 (420)
Q Consensus 135 ~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~ 214 (420)
+++. ....+.++++||.+|++++.+|+++.+++||.+..+++.|++++|+++|+++++++++++++.|+++++||||+.
T Consensus 4 ~~~~-~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~ 82 (286)
T TIGR00841 4 TNLS-TILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGT 82 (286)
T ss_pred hhHH-HHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCch
Confidence 4554 455566999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----cChHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014688 215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVP----VDAAGLAISTFQVVLVPTVVGVLANEFFPKFT 290 (420)
Q Consensus 215 ~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G~~v~----id~~~l~~~ll~~VllPlllG~llr~~~p~~~ 290 (420)
++++||+++|||.++++.++.++|+++++++|+++.++.|...+ +|+.+++.+ +.++++|+++|+++|+++|++.
T Consensus 83 ~s~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~ 161 (286)
T TIGR00841 83 ASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIA 161 (286)
T ss_pred HHHHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999998765444 999999999 9999999999999999999988
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc-CCCccCcceehhhhhhchHHH
Q 014688 291 SKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQSSAL 369 (420)
Q Consensus 291 ~ri~~~~~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~-~l~~~~~~tlsi~~G~rNs~L 369 (420)
++.++ .+.++.+.+.+++....+.+.+.+.+..+.++.++++++.++|.+||+++|. |+++++++|+++|+|+||+++
T Consensus 162 ~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~l 240 (286)
T TIGR00841 162 KIILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQL 240 (286)
T ss_pred HHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHH
Confidence 88877 7788777666665666666767777777888889999999999999999998 889999999999999999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014688 370 GFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQP 409 (420)
Q Consensus 370 al~lA~~~F~~pl~avP~~v~~~~q~l~gs~la~~wr~~~ 409 (420)
|+++|.++|+ |..++|.++|.++|++.+..++.+|+|+.
T Consensus 241 al~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~ 279 (286)
T TIGR00841 241 CSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIH 279 (286)
T ss_pred HHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 89999999999999999999999999874
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=1e-37 Score=311.10 Aligned_cols=294 Identities=24% Similarity=0.368 Sum_probs=257.9
Q ss_pred hHHHHHHHHHHHHHHhccchhh---hhh-HhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 014688 114 TLFPVWVILGTIIGIYKPSAVT---WLE-TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFV 189 (420)
Q Consensus 114 ~~~~l~ii~gv~lgl~~P~~~~---~l~-~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~ 189 (420)
+||++.++.++++|..+|+.+. +++ +....+++++++|..|++++.+|+++.++|||....++..+|+++|+++++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999876 343 246778899999999999999999999999999999999999999999999
Q ss_pred HHHHhC--CchhhhhhhhhcccCchhhHHH-HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccChHHHH
Q 014688 190 IAMTLK--LSAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA-GQLVPVDAAGLA 265 (420)
Q Consensus 190 l~~~~~--l~~~la~GliLla~~P~~~~s~-v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~-G~~v~id~~~l~ 265 (420)
+.++++ .+++++.|+++++|+|++..|+ +||+++|||.++|+..+.++|+++++++|+++.++. |+..++|..+++
T Consensus 81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~ 160 (313)
T PF13593_consen 81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL 160 (313)
T ss_pred HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence 999884 6888999999999999998877 589999999999999999999999999999999998 788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh--hhHHhhh----hhhHHHHHHHHHHHHH
Q 014688 266 ISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQV--SAVLKTQ----GAQLIFPVALLHAAAF 339 (420)
Q Consensus 266 ~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~~a~~--~~~l~~~----~~~ill~~~ll~~~~f 339 (420)
.++...+++|+++|+++|++++++.+|+++..++++-..+..++...+... ++.+.+. ...+....+.++...+
T Consensus 161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 240 (313)
T PF13593_consen 161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL 240 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888887665555544433332 3333222 2233445677888999
Q ss_pred HHHHHHhhc-CCCccCcceehhhhhhchHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHHHHHHHhc
Q 014688 340 ALGYWLSKI-SFGESTSRTISIECGMQSSALGFLLAQKHFTN----PLVAVPSAVSVVCMALGGSALAVFWRN 407 (420)
Q Consensus 340 ~lG~ll~r~-~l~~~~~~tlsi~~G~rNs~Lal~lA~~~F~~----pl~avP~~v~~~~q~l~gs~la~~wr~ 407 (420)
.++|+.+|. +++++|++++.+..++||.++|++++...|++ +.+.+|+++||..|.+.+++++.+|+|
T Consensus 241 ~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r 313 (313)
T PF13593_consen 241 VLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR 313 (313)
T ss_pred HHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999 99999999999999999999999999999974 478999999999999999999999986
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-32 Score=264.24 Aligned_cols=291 Identities=21% Similarity=0.334 Sum_probs=245.8
Q ss_pred CCCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhH-------hHHHHHHHHHHHHhccCCChHHHHHHhcCchH
Q 014688 99 PGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLET-------DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWT 171 (420)
Q Consensus 99 ~~~~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~-------~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~ 171 (420)
.+.++++||++ .-|..+++++|+.+|..+|+.++++.. ...++++.+||+.+.++++++++++..+++|.
T Consensus 6 ~k~l~~~dk~l---~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~ 82 (342)
T COG0798 6 KKKLSFLDKYL---TLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKP 82 (342)
T ss_pred hhhhhHHHHHH---HHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchH
Confidence 34566666665 778889999999999999997665441 46888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 014688 172 VGIGFLAQYLIKPMLGFVIAMTLK-LSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTK 250 (420)
Q Consensus 172 l~~~l~~~~vl~Plla~~l~~~~~-l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ 250 (420)
+..++..|+++.|++.|++++++. ..|++.+|+++++.+||..++.+|+++++||.++++..+.++.++++++.|.+.+
T Consensus 83 L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~ 162 (342)
T COG0798 83 LILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGK 162 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998874 5667999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCc-cccChHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHhhhhhHH---HHHHHHHHHHHHHhhhhhHH
Q 014688 251 LLAGQL-VPVDAAGLAISTFQVVLVPTVVGVLANEFFPKF------TSKIISVTPLI---GVILTTLLCASPIGQVSAVL 320 (420)
Q Consensus 251 ll~G~~-v~id~~~l~~~ll~~VllPlllG~llr~~~p~~------~~ri~~~~~~i---s~l~lill~~~~~a~~~~~l 320 (420)
++.|.. +++++..++++++.++.+|+++|++.|++..|+ .+|..|..+.+ +.+++++++++..++.....
T Consensus 163 ~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~ 242 (342)
T COG0798 163 FFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQ 242 (342)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhC
Confidence 998754 889999999999999999999999999986543 34555554444 45556666666666554433
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhc-CCCccCcceehhhhhhchHHHHHHHHHHhcC-----------CcchHHHHH
Q 014688 321 KTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQSSALGFLLAQKHFT-----------NPLVAVPSA 388 (420)
Q Consensus 321 ~~~~~~ill~~~ll~~~~f~lG~ll~r~-~l~~~~~~tlsi~~G~rNs~Lal~lA~~~F~-----------~pl~avP~~ 388 (420)
+.+...+.++.++.....+.++|+++|. |++++++.++++..+.+|..+++++|.+.|+ +|++.+|++
T Consensus 243 p~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vigpLvEVpvm 322 (342)
T COG0798 243 PLDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIALFGLTSGAALATVVGPLVEVPVM 322 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHHhcCccccchhhhhccchhhHHHH
Confidence 4444556667788888999999999999 9999999999999999999999999999996 355556665
Q ss_pred HHHH
Q 014688 389 VSVV 392 (420)
Q Consensus 389 v~~~ 392 (420)
++.+
T Consensus 323 l~lV 326 (342)
T COG0798 323 LGLV 326 (342)
T ss_pred HHHH
Confidence 5444
No 6
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.96 E-value=4.8e-29 Score=231.30 Aligned_cols=178 Identities=44% Similarity=0.677 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-HHhCCchhhhhhhhhcccCchhhHHHHHHH
Q 014688 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIA-MTLKLSAPLATGLILVSCCPGGQASNVATY 221 (420)
Q Consensus 143 ~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~-~~~~l~~~la~GliLla~~P~~~~s~v~t~ 221 (420)
+..++++||++|++++++|+++.+||||.+..+++.|++++|+++|+++ .+++.+++++.|+++++||||++++++||+
T Consensus 1 ~i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~ 80 (187)
T PF01758_consen 1 PILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTY 80 (187)
T ss_dssp --HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHH
T ss_pred ChhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999 888999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC---hHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHhhh
Q 014688 222 ISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVD---AAGLAISTFQVVLVPTVVGVLANEFFP--KFTSKIISV 296 (420)
Q Consensus 222 lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G~~v~id---~~~l~~~ll~~VllPlllG~llr~~~p--~~~~ri~~~ 296 (420)
++|||.++++.+|.++++++++++|+++.++.+...+.| ..+++.+++.++++|+++|+++|++.| ++.+++++.
T Consensus 81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~ 160 (187)
T PF01758_consen 81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPF 160 (187)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCC
T ss_pred HhCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999988777777 899999999999999999999999999 888899998
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHH
Q 014688 297 TPLIGVILTTLLCASPIGQVSAVL 320 (420)
Q Consensus 297 ~~~is~l~lill~~~~~a~~~~~l 320 (420)
.+.++.+.+++.+....+.+.+.+
T Consensus 161 ~~~~s~~~l~~~i~~~~~~~~~~i 184 (187)
T PF01758_consen 161 LKPLSFILLLLIIVLIFASNASVI 184 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH---
T ss_pred hhHHHHHHHHHHHHHHHHHhcccc
Confidence 888887776666555555555543
No 7
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.1e-29 Score=253.06 Aligned_cols=280 Identities=43% Similarity=0.618 Sum_probs=250.5
Q ss_pred hHHHHHHHHHHHHHHhcc-chhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Q 014688 114 TLFPVWVILGTIIGIYKP-SAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAM 192 (420)
Q Consensus 114 ~~~~l~ii~gv~lgl~~P-~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~ 192 (420)
..++.....+..+....| ..+.|+.....+..+.+.|+++|++++.+++++..++|..+..|++.||+++|+.+|.+.+
T Consensus 86 ~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~ 165 (371)
T KOG2718|consen 86 LILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSK 165 (371)
T ss_pred cchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhh
Confidence 467888888888888888 7788988778889999999999999999999999999999999999999999999999999
Q ss_pred HhCCchhhhhhhhhcccCchhhHHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccChHHHHHHHHHH
Q 014688 193 TLKLSAPLATGLILVSCCPGGQASNVAT-YISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQV 271 (420)
Q Consensus 193 ~~~l~~~la~GliLla~~P~~~~s~v~t-~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G~~v~id~~~l~~~ll~~ 271 (420)
.+.++...++|+++++|++++..++..+ ...+||+.+++.||.++|+.+++++|++...+.++.++.|...+..+.+++
T Consensus 166 ~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~v 245 (371)
T KOG2718|consen 166 VLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQV 245 (371)
T ss_pred HhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHH
Confidence 9999998888888888877666666554 455999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc-CC
Q 014688 272 VLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SF 350 (420)
Q Consensus 272 VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~-~l 350 (420)
+.+|+.+|.++|+++|+..+.+.+..+.++++..++.++...+.+.+.+...+++++..+..+++.+|..||+.++. +-
T Consensus 246 v~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~~~~~i~~~~~~l~l~g~l~~Y~~~~~~~~ 325 (371)
T KOG2718|consen 246 VGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLFFGYQILLLGAALPLAGFLAGYLLSFSPLD 325 (371)
T ss_pred hHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999998889999999998888888888888888888889999999999999999999999744 22
Q ss_pred CccCcceehhhhhhchHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 014688 351 GESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVC 393 (420)
Q Consensus 351 ~~~~~~tlsi~~G~rNs~Lal~lA~~~F~~pl~avP~~v~~~~ 393 (420)
+..++||+++|+||||+.+++.+++.+|+||.++.|.....+.
T Consensus 326 ~~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s~v~ 368 (371)
T KOG2718|consen 326 DVATARTISIETGMQNSLLALALATKHLQDPLVVVPPATSSVL 368 (371)
T ss_pred hhhhhcchHHHhccchhHHHHHHhhcccCCceeeeccchhhhh
Confidence 2348899999999999999999999999999998887765443
No 8
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.15 E-value=9.6e-10 Score=110.13 Aligned_cols=143 Identities=19% Similarity=0.209 Sum_probs=118.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHh---ccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHH
Q 014688 107 QIIEILTTLFPVWVILGTIIGIY---KPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIK 183 (420)
Q Consensus 107 r~~~~l~~~~~l~ii~gv~lgl~---~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~ 183 (420)
.+.+.+.+....+.++|.++... .|+.....-+.+......+.|+..|+.++.++.+ +++|........++++.
T Consensus 175 ~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~ 251 (321)
T TIGR00946 175 VWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQ 251 (321)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHH
Confidence 34445577778888888877765 3554322222466778889999999999877654 34566777788899999
Q ss_pred HHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 184 PMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLL 252 (420)
Q Consensus 184 Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll 252 (420)
|++++++...++++++.....++++++|++..+.+++++.|+|.+++...+.+||+++++++|+++.++
T Consensus 252 P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 252 PAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999998764
No 9
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=99.11 E-value=7.4e-11 Score=109.80 Aligned_cols=183 Identities=24% Similarity=0.329 Sum_probs=142.1
Q ss_pred cHHHHHHHHh-hhHHHHHHHHHHHHHHhccchhh---hhhHh--HHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHH
Q 014688 103 SQYEQIIEIL-TTLFPVWVILGTIIGIYKPSAVT---WLETD--LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGF 176 (420)
Q Consensus 103 ~~~~r~~~~l-~~~~~l~ii~gv~lgl~~P~~~~---~l~~~--~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l 176 (420)
-|.+|.+|++ .+|+-..+.+.+..+-+-|+.+. .+++. ....+++-+++..|++++.|++....++||..++++
T Consensus 11 i~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFil 90 (287)
T KOG4821|consen 11 IWAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFIL 90 (287)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHH
Confidence 4678999999 68999999999999999888753 23221 334567778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhC---CchhhhhhhhhcccCchhhHHHHH-HHHcCCChHHHHHHHHHHHHHHH----HHHHHH
Q 014688 177 LAQYLIKPMLGFVIAMTLK---LSAPLATGLILVSCCPGGQASNVA-TYISKGNVALSVLMTTCSTIGAI----VMTPLL 248 (420)
Q Consensus 177 ~~~~vl~Plla~~l~~~~~---l~~~la~GliLla~~P~~~~s~v~-t~lagGn~~Lav~~t~istlla~----~~~Pl~ 248 (420)
+..+.+.|-..|++..... .++++..|+.+.+|+|++..|++. |..+|||.. +.++.|.+++. ...|-.
T Consensus 91 I~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~---A~~v~S~f~g~L~~~~i~~~l 167 (287)
T KOG4821|consen 91 ILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNAS---ALCVCSVFIGNLLGAFITPAL 167 (287)
T ss_pred HHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHH---HHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999887664 566899999999999999999975 999999983 34444555544 445555
Q ss_pred HHHhcC------------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014688 249 TKLLAG------------QLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPK 288 (420)
Q Consensus 249 l~ll~G------------~~v~id~~~l~~~ll~~VllPlllG~llr~~~p~ 288 (420)
...+.- ..+...+..++.+....+++|...|...+..+|+
T Consensus 168 ~q~LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 219 (287)
T KOG4821|consen 168 VQMLLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPK 219 (287)
T ss_pred HHHHHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCC
Confidence 444431 1111223456677788889999999999988875
No 10
>PRK09903 putative transporter YfdV; Provisional
Probab=99.09 E-value=2.2e-09 Score=107.40 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=117.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHh---ccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHH
Q 014688 106 EQIIEILTTLFPVWVILGTIIGIY---KPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLI 182 (420)
Q Consensus 106 ~r~~~~l~~~~~l~ii~gv~lgl~---~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl 182 (420)
+.+.+.+.+......++|.++... .|+.....-+.+......+.|+..|+++...+++ .+ +......+.++++
T Consensus 165 ~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli~ 240 (314)
T PRK09903 165 SALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLIL 240 (314)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHHH
Confidence 556666678888888888876665 5654432222466678889999999998876653 12 3445667789999
Q ss_pred HHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 183 KPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLL 252 (420)
Q Consensus 183 ~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll 252 (420)
.|++++++...+++++.....+++++++|++..+.+++...|+|.+++...+.+||+++.+++|++++++
T Consensus 241 ~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 241 MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988899999999999999999999999999999999999999999999999999999999865
No 11
>COG0679 Predicted permeases [General function prediction only]
Probab=98.89 E-value=5e-08 Score=97.67 Aligned_cols=144 Identities=23% Similarity=0.335 Sum_probs=117.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHH---hccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHH
Q 014688 108 IIEILTTLFPVWVILGTIIGI---YKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKP 184 (420)
Q Consensus 108 ~~~~l~~~~~l~ii~gv~lgl---~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~P 184 (420)
..+-+.+......++|.++.. ..|+...............+.|+.+|++++.++.++ .+++........+++++|
T Consensus 162 ~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~~kll~~P 239 (311)
T COG0679 162 LKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALSLKLLLAP 239 (311)
T ss_pred HHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHHHHHHHHH
Confidence 333446788888888887774 466643322224667788899999999999944432 334566667777999999
Q ss_pred HHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014688 185 MLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (420)
Q Consensus 185 lla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~ 253 (420)
+.++++.++++++++....+++++++|++..+.+++++.++|.+++...+.+||+++++++|.+...+.
T Consensus 240 l~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~ 308 (311)
T COG0679 240 LVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLL 308 (311)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999889999999999999999999999999999999999999999999999887764
No 12
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.66 E-value=4.5e-07 Score=92.56 Aligned_cols=141 Identities=23% Similarity=0.276 Sum_probs=113.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhccchh----hhhhH---hHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHH
Q 014688 108 IIEILTTLFPVWVILGTIIGIYKPSAV----TWLET---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY 180 (420)
Q Consensus 108 ~~~~l~~~~~l~ii~gv~lgl~~P~~~----~~l~~---~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~ 180 (420)
+.+.+.+...+..++|++++..-|... .++.. .+....+.+.|+.+|.++.....+... +.+......+.++
T Consensus 238 ~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~rl 316 (385)
T PF03547_consen 238 ILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVRL 316 (385)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHH
Confidence 344556778888889999988854432 34332 355667888999999988765543222 2334445678899
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 014688 181 LIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLT 249 (420)
Q Consensus 181 vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l 249 (420)
+++|++++++.+.++++++....+++.+++|++..+.+++.+.+.|.+.+.....++++++++++|+|+
T Consensus 317 ii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 317 IILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999999999999973
No 13
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=98.35 E-value=9.6e-07 Score=89.84 Aligned_cols=227 Identities=22% Similarity=0.263 Sum_probs=158.1
Q ss_pred HHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHH-HHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCC
Q 014688 147 GFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYL-IKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKG 225 (420)
Q Consensus 147 ~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~v-l~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagG 225 (420)
...|+..|++++.+.+.++.++++.+...+..++- ++|+..+.....+..++..+...+...++|++..++.++.-.++
T Consensus 51 ~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~ 130 (371)
T KOG2718|consen 51 NFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKL 130 (371)
T ss_pred hHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCc
Confidence 37889999999999999999888877777778888 99999999999998888899999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHH-HHHHHhc----CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 014688 226 NVALSVLMTTCSTIGAIVMTP-LLTKLLA----GQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLI 300 (420)
Q Consensus 226 n~~Lav~~t~istlla~~~~P-l~l~ll~----G~~v~id~~~l~~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~i 300 (420)
|.+....++.-.+.+.+.++| ++++=+. +.....|...-..-++...+.|--.|..++..+++-...+......+
T Consensus 131 ~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~ 210 (371)
T KOG2718|consen 131 DMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTI 210 (371)
T ss_pred cHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHH
Confidence 999999999988888887777 3322121 22222333221223445677888899988888755443444433334
Q ss_pred HHHHHHHH-HHHHHhhhhhHHhhhhhhHHHHHHHHHHHH--HHHHHHHhhcCCCccCcceehhhhhhchHHHHHHHHHHh
Q 014688 301 GVILTTLL-CASPIGQVSAVLKTQGAQLIFPVALLHAAA--FALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKH 377 (420)
Q Consensus 301 s~l~lill-~~~~~a~~~~~l~~~~~~ill~~~ll~~~~--f~lG~ll~r~~l~~~~~~tlsi~~G~rNs~Lal~lA~~~ 377 (420)
+.+..+++ ........+..+..+...+.. -.+...+ +.+|+++.++ -.+++..++.++||.++..++-.-.
T Consensus 211 stv~avi~~pl~s~~l~~~l~~~d~~~v~~--s~~~vv~~pl~lG~lL~~~----~~k~t~~i~~~~~~vsv~~t~l~~~ 284 (371)
T KOG2718|consen 211 STVLAVILTPLLSILLGRALIPVDALGVIA--SILQVVGLPLALGLLLNKW----FPKRTVAIEPGLPPVSVCLTILCLA 284 (371)
T ss_pred HHHHHHHHHHHHHHhhchhhhcccchhhhh--hhhHHhHHHHHHHHHhccc----CccceeeeecCCCchHHHhhhhhhc
Confidence 33322222 111111122222233333322 2333444 8889988865 2367888999999999998887777
Q ss_pred cC
Q 014688 378 FT 379 (420)
Q Consensus 378 F~ 379 (420)
|+
T Consensus 285 ~p 286 (371)
T KOG2718|consen 285 FP 286 (371)
T ss_pred CC
Confidence 75
No 14
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.28 E-value=6.3e-05 Score=74.96 Aligned_cols=277 Identities=15% Similarity=0.221 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHHHhccchhhh-------hhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 014688 114 TLFPVWVILGTIIGIYKPSAVTW-------LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPML 186 (420)
Q Consensus 114 ~~~~l~ii~gv~lgl~~P~~~~~-------l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Pll 186 (420)
..+.+=+++|.++.-++|+.... ++ .=....+++.+|++|.+++.++-...+++--.+ +..++++-=++
T Consensus 13 g~m~vPl~lga~inTf~P~~l~iG~fT~alf~-~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l---~~~K~~~~~~~ 88 (312)
T PRK12460 13 GMMVVPLLIGALINTFFPQALEIGGFTTALFK-TGAAPLLGAFLLCMGAQISLKAAPQALLKGGVL---TITKLGVAIVI 88 (312)
T ss_pred ceeHHHHHHHHHHHhccCcchhhCcccHHHHh-cChHHHHHHHHHHhcCeeeccccchhhhhhhhh---hhHHHHHHHHH
Confidence 44555677899999999987431 21 123468899999999999999998888763322 24578777788
Q ss_pred HHHHHHHhCCchhhhh-hhhhcccCchhhHH--HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ccccCh
Q 014688 187 GFVIAMTLKLSAPLAT-GLILVSCCPGGQAS--NVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LVPVDA 261 (420)
Q Consensus 187 a~~l~~~~~l~~~la~-GliLla~~P~~~~s--~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G~--~v~id~ 261 (420)
+++++++++.+.-.-+ .+.+++++--...+ ...+.++|-+.+-.. .... ++---|+...+-.|. ..++|+
T Consensus 89 g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~gA-~~~~----sl~~GPf~tm~aLga~gLA~ip~ 163 (312)
T PRK12460 89 GLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDERDVGA-ISIL----SLNDGPFFTMLALGAAGLANIPI 163 (312)
T ss_pred HHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhhH-Hhhh----hhccCcHHHHHHHHHHHHhcCCh
Confidence 8999999987663211 12233332222111 123555555544333 2222 233344444333322 124554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHHHHHHH
Q 014688 262 AGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFAL 341 (420)
Q Consensus 262 ~~l~~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~~~f~l 341 (420)
.. +. -.++|+++|++++...+++.+..++-.+. .+.+..... . ..-+-+.+.+.++.-++..++...+.+.+
T Consensus 164 ~~----lv-~lilpILiGmilGNld~~~~~~l~~Gi~f-~I~f~~f~L-G-~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 164 MA----LV-AALLPLVLGMILGNLDPDMRKFLTKGGPL-LIPFFAFAL-G-AGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HH----HH-HHHHHHHHHHHHhccchhhHHHHhccceE-eHHHHHHHh-c-CCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 43 22 38899999999999877776666664432 111111111 1 11122344456666666667777788899
Q ss_pred HHHHhhcCCCccCcceehhhhhhchH-HHHHHHHHH--hcCCcch---HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014688 342 GYWLSKISFGESTSRTISIECGMQSS-ALGFLLAQK--HFTNPLV---AVPSAVSVVCMALGGSALAVFWRNQP 409 (420)
Q Consensus 342 G~ll~r~~l~~~~~~tlsi~~G~rNs-~Lal~lA~~--~F~~pl~---avP~~v~~~~q~l~gs~la~~wr~~~ 409 (420)
+|+++|+ ++.+......+.+..-|+ .-+..++.. .+ .|.+ ..=++-+.+.-.+..-++..||-||-
T Consensus 236 ~~~i~rl-lg~~~~~g~li~stAGnAIcgpAAVaAadP~~-~~~~~~Ataqvaa~vivTail~P~~t~~~~k~~ 307 (312)
T PRK12460 236 NIFADRL-VGGTGIAGAAASSTAGNAVATPLAIAAADPSL-APVAAAATAQVAASVIVTAILTPLLTSWVAKKE 307 (312)
T ss_pred HHHHHHH-hCCChhHHHHHHHHhhHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987 333333333333223444 122222221 11 1211 11123344444555666667776663
No 15
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=98.14 E-value=0.00061 Score=67.80 Aligned_cols=182 Identities=18% Similarity=0.308 Sum_probs=116.1
Q ss_pred CcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhh---H---hHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHH
Q 014688 102 MSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLE---T---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIG 175 (420)
Q Consensus 102 ~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~---~---~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~ 175 (420)
|++.+.++|.=...+.+=+++|.++.-++|+..+.+. + .-....+++.+|++|.++++++..+.+||--.+
T Consensus 1 MkI~~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~l--- 77 (314)
T PF03812_consen 1 MKIKKTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVL--- 77 (314)
T ss_pred CChhHhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHH---
Confidence 3444555444356677778899999999999865321 1 113468899999999999999999999863322
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchh---hhhh---hhhcccCchhhHHH--HHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Q 014688 176 FLAQYLIKPMLGFVIAMTLKLSAP---LATG---LILVSCCPGGQASN--VATYISKGNVALSVLMTTCSTIGAIVMTPL 247 (420)
Q Consensus 176 l~~~~vl~Plla~~l~~~~~l~~~---la~G---liLla~~P~~~~s~--v~t~lagGn~~Lav~~t~istlla~~~~Pl 247 (420)
++.++++-=++++++.++++.+.- ...| +.+++++-....+. ..+...|-+.+-+ ... ++++..-|+
T Consensus 78 l~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~g-A~~----i~sl~~GPf 152 (314)
T PF03812_consen 78 LLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVG-AFS----ILSLNDGPF 152 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhH-HHH----HHHhhhhHH
Confidence 346888878889999999986642 2222 23333333332222 2344544444433 333 334455566
Q ss_pred HHHHhcC--CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 014688 248 LTKLLAG--QLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISV 296 (420)
Q Consensus 248 ~l~ll~G--~~v~id~~~l~~~ll~~VllPlllG~llr~~~p~~~~ri~~~ 296 (420)
...+..| ...++|+..+. -.++|+++|+++-..-|++.+-..+-
T Consensus 153 ~tMl~LG~sG~a~ip~~~lv-----~~llP~iiG~iLGNLD~~~r~fl~~~ 198 (314)
T PF03812_consen 153 FTMLALGASGLANIPWMSLV-----AALLPIIIGMILGNLDPDFRKFLAPG 198 (314)
T ss_pred HHHHHHhhccccCCCHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHhcC
Confidence 5555444 23467776543 57899999999999888877666553
No 16
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.57 E-value=0.11 Score=52.52 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014688 117 PVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKL 196 (420)
Q Consensus 117 ~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l 196 (420)
.-.+++..+.+...|....+= ...-.....++=..+|.+++.+.+.+....+.......+...+..-+.+|.+.+..+.
T Consensus 3 lG~~ia~~~~~~~~~~~~~~p-~~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~ 81 (318)
T PF05145_consen 3 LGPMIAVIIAALFGPLPLRVP-RRLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGL 81 (318)
T ss_pred hHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334555566666553322221 1334555666667899999999999888877766666667777777788888888777
Q ss_pred chhhhhhhhhcccCchhhHHH-HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014688 197 SAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG 254 (420)
Q Consensus 197 ~~~la~GliLla~~P~~~~s~-v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G 254 (420)
|.. --++++.|||.... ++++-.|+|...-+....+=.+.-++++|+...++.+
T Consensus 82 d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~ 136 (318)
T PF05145_consen 82 DRA----TAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLLGG 136 (318)
T ss_pred Chh----HHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 654 34678999997776 5699999999999999999999999999999988765
No 17
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.49 E-value=0.13 Score=52.32 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHH-HHHH
Q 014688 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN-VATY 221 (420)
Q Consensus 143 ~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~-v~t~ 221 (420)
-....++=..+|.+++.+++....++|-......+......=+.+|.+.+.-+.|..- -..+++|||.+.. .+++
T Consensus 61 ~~~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA~ 136 (352)
T COG3180 61 KAGQVILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIAQ 136 (352)
T ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHHH
Confidence 3444445567899999999999888888877777778888888899988877666543 2578999997777 5699
Q ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014688 222 ISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG 254 (420)
Q Consensus 222 lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G 254 (420)
-.|.|..+...++.+=-+.-..+.|+....+.|
T Consensus 137 d~gAd~~~VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 137 DYGADLRLVALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998874
No 18
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.42 E-value=0.0043 Score=61.60 Aligned_cols=170 Identities=13% Similarity=0.196 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHhccchhhhhh---Hh---HHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 014688 114 TLFPVWVILGTIIGIYKPSAVTWLE---TD---LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLG 187 (420)
Q Consensus 114 ~~~~l~ii~gv~lgl~~P~~~~~l~---~~---~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla 187 (420)
..+.+=+++|.++.-++|+....+. +. =....+++.+|++|.+++.++-...+++--.+ +..++++-=+++
T Consensus 13 G~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~~~K~~i~~~~g 89 (314)
T TIGR00793 13 GMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---VVTKIAVAWVVA 89 (314)
T ss_pred ceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---eeHHHHHHHHHH
Confidence 4455557789999999999854321 11 23458899999999999999988888764322 235777777788
Q ss_pred HHHHHHhCCch---hhhhhhhhcccCchhhHHH-----HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc
Q 014688 188 FVIAMTLKLSA---PLATGLILVSCCPGGQASN-----VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LV 257 (420)
Q Consensus 188 ~~l~~~~~l~~---~la~GliLla~~P~~~~s~-----v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G~--~v 257 (420)
++++++++.+. .+..|+-.++..-+-..+| ..+.++|-+.+-.. .. +.++---|+...+..|. ..
T Consensus 90 ~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA-~~----i~sl~~GPf~TMi~LG~sGlA 164 (314)
T TIGR00793 90 AIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGA-FV----LMSLESGPLMTMVILGTAGIA 164 (314)
T ss_pred HHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhh-hh----hhhhccCcHHHHHHHhhccCC
Confidence 89999998665 2222332222222222222 23555555444332 22 23334456665555543 34
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 014688 258 PVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISV 296 (420)
Q Consensus 258 ~id~~~l~~~ll~~VllPlllG~llr~~~p~~~~ri~~~ 296 (420)
++|+..+ .-.++|+++|+++-..-|++.+-..+-
T Consensus 165 ~ip~~~l-----v~~ilPlliG~ilGNLD~~~r~fl~~~ 198 (314)
T TIGR00793 165 SFEPHVF-----VGAVLPFLVGFALGNLDPELRDFFSKA 198 (314)
T ss_pred CCCHHHH-----HHHHHHHHHHHHHhcCCHHHHHHhccC
Confidence 5776554 357899999999998888776666553
No 19
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.42 E-value=0.17 Score=55.55 Aligned_cols=109 Identities=21% Similarity=0.171 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhccch---hhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 014688 115 LFPVWVILGTIIGIYKPSA---VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIA 191 (420)
Q Consensus 115 ~~~l~ii~gv~lgl~~P~~---~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~ 191 (420)
.....+++|+++|-..... ...+. .+..+.+.++||..|++++++++++..|. .+..+ ..|.++.-+++++++
T Consensus 31 ~vlgyilaGillGP~~lg~i~~~~~i~-~laelGvv~LlF~iGLEl~~~~l~~~~~~--~~~~g-~~qv~~~~~~~~~~~ 106 (621)
T PRK03562 31 SVLGYLIAGCIIGPWGLRLVTDVESIL-HFAEFGVVLMLFVIGLELDPQRLWKLRRS--IFGGG-ALQMVACGGLLGLFC 106 (621)
T ss_pred hHHHHHHHHHHhCcccccCCCCHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHH
Confidence 3455667788887432111 11122 45668999999999999999999865442 33333 345555445556666
Q ss_pred HHhCCchh--hhhhhhhcccCchhhHHHHHHHHcCCChH
Q 014688 192 MTLKLSAP--LATGLILVSCCPGGQASNVATYISKGNVA 228 (420)
Q Consensus 192 ~~~~l~~~--la~GliLla~~P~~~~s~v~t~lagGn~~ 228 (420)
..++.+.. +..|..+..++ ++....++...-.-+..
T Consensus 107 ~~~g~~~~~al~ig~~la~SS-taiv~~~L~e~~~l~t~ 144 (621)
T PRK03562 107 MLLGLRWQVALLIGLGLALSS-TAIAMQAMNERNLMVTQ 144 (621)
T ss_pred HHhCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCc
Confidence 77776543 34454444333 33334455544333333
No 20
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.24 Score=51.53 Aligned_cols=160 Identities=21% Similarity=0.320 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHH--h--ccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHH-HHHHH
Q 014688 115 LFPVWVILGTIIGI--Y--KPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKP-MLGFV 189 (420)
Q Consensus 115 ~~~l~ii~gv~lgl--~--~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~P-lla~~ 189 (420)
.....+++|+++|- + ..+..+.++ ......+.++||..|++.+++++++..|+. ..+...--+..| .++..
T Consensus 32 ~vlg~llaGiilGp~~~~~~~~~~~~i~-~laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~ 107 (397)
T COG0475 32 PVLGYLLAGIILGPWGLLLIIESSEIIE-LLAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLL 107 (397)
T ss_pred hHHHHHHHHHhcCcccccccCCchHHHH-HHHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHH
Confidence 34556778888885 1 222334443 577899999999999999999999876653 222222233445 33322
Q ss_pred HHH-HhCCchh--hhhhhhhcccCchhhHHHHHHHHcCCChH---HHHHHHHHHHHHHHHHHHHHHHHhcCCccccC-hH
Q 014688 190 IAM-TLKLSAP--LATGLILVSCCPGGQASNVATYISKGNVA---LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVD-AA 262 (420)
Q Consensus 190 l~~-~~~l~~~--la~GliLla~~P~~~~s~v~t~lagGn~~---Lav~~t~istlla~~~~Pl~l~ll~G~~v~id-~~ 262 (420)
... .++.+.. +..|.. ++....+..+.++.++-+=+.+ .......+.-+.+..+..+...+..+...+.+ ..
T Consensus 108 ~~~~~~g~~~~~al~lg~~-l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~ 186 (397)
T COG0475 108 LLLGILGLSLIAALFLGAA-LALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFIL 186 (397)
T ss_pred HHHHHhccChHHHHHHHHH-HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHH
Confidence 222 3554443 333333 2333344455555554444433 33444455555555555555544433333333 24
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014688 263 GLAISTFQVVLVPTVVG 279 (420)
Q Consensus 263 ~l~~~ll~~VllPlllG 279 (420)
.+...+..+..+=+.+|
T Consensus 187 ~~~~~~~~f~~~~l~~g 203 (397)
T COG0475 187 GLLLAILAFLALLLLLG 203 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444434444
No 21
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=97.23 E-value=0.052 Score=55.03 Aligned_cols=234 Identities=15% Similarity=0.209 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHhccchhh-------hhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 014688 115 LFPVWVILGTIIGIYKPSAVT-------WLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLG 187 (420)
Q Consensus 115 ~~~l~ii~gv~lgl~~P~~~~-------~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla 187 (420)
.+.+=+++|..+.-++|+... .++ .-....+++.++++|.++++++-...+++--.+. +.++.+-=+++
T Consensus 16 ~m~vpl~~g~~i~tf~P~~~~~g~fT~alf~-~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l~---~~k~~~~~~~~ 91 (326)
T PRK05274 16 MMLVPLLLGALINTFAPGALYFGSFTNALFK-TGAVPILAVFLFCMGASINLRATGTVLKKGGTLL---LTKFAVAALVG 91 (326)
T ss_pred eeeHHHHHHHHHHHhCCcceeeCcchHHHHh-cChHHHHHHHHHHcCCEEeccccchhhhhchhHH---HHHHHHHHHHH
Confidence 445557789999999998521 122 2234588899999999999999888887643332 24565555667
Q ss_pred HHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHH-HH--------HHHHHHHHHHHHHHHhcCC--c
Q 014688 188 FVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMT-TC--------STIGAIVMTPLLTKLLAGQ--L 256 (420)
Q Consensus 188 ~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t-~i--------stlla~~~~Pl~l~ll~G~--~ 256 (420)
++..++++.+. +..|+... ...-...+.+-+.|.++-...+ -. -.+++.=.-|.....+.+. .
T Consensus 92 ~~~~~~~g~~~-i~~gl~~G-----~s~la~~a~l~~~N~~ly~~~~~~~g~~~d~ga~i~lsl~~Gp~~tM~lL~aagl 165 (326)
T PRK05274 92 VIAGKFIGEEG-IRLGGFAG-----LSTLAIIAAMDNTNGGLYAALMGQYGTKEDAGAFVLMSLEDGPFMTMLALGAAGL 165 (326)
T ss_pred HHhhhcchHHH-HHHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHhCCCCCcchHHHHHHhhhHHHHHHHHHhhCc
Confidence 77777665422 22222110 0011122333333333221110 00 1122223335544444332 2
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHH
Q 014688 257 VPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHA 336 (420)
Q Consensus 257 v~id~~~l~~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~ 336 (420)
..++...+. + .++|+++|+.++.+.+++.+...+-.+.+ +=...+... .+-+.+.+...+..-++..+..+.
T Consensus 166 a~~p~~~li-~----allplliG~~lgnl~~~l~~~~~~Gi~~l--Lp~~~~~lG-~~l~lq~i~~~G~~GilL~~~~~~ 237 (326)
T PRK05274 166 ASFPPPALV-G----AVLPLLVGFILGNLDPELRQFLGKAVPVL--IPFFAFALG-NGIDLGTIITAGLSGILLGVAVVA 237 (326)
T ss_pred ccCCCchhh-H----HHHHHHHHHHHHhHHHhhHHHhcCCcEEE--HHHHHHHHh-cceeHhHHHhcCCcchhhhhhHhh
Confidence 345554442 2 33999999999998877777666543331 000011111 111112233344444444445555
Q ss_pred HHHHHHHHHhhcCC-CccCcceehhhhhhchH
Q 014688 337 AAFALGYWLSKISF-GESTSRTISIECGMQSS 367 (420)
Q Consensus 337 ~~f~lG~ll~r~~l-~~~~~~tlsi~~G~rNs 367 (420)
....++|+..|. + .++.....++.++..|+
T Consensus 238 ~t~~~~~~~~Rl-~~~~~g~~g~a~~ttaG~a 268 (326)
T PRK05274 238 VTGIPLYLADRL-IGGGNGVAGAAAGSTAGNA 268 (326)
T ss_pred ccchhhHhHhhe-eecCCCcchHHHHHHHHHH
Confidence 666778888887 3 22333345555666666
No 22
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.94 E-value=0.1 Score=52.43 Aligned_cols=135 Identities=18% Similarity=0.164 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHhccchhhhhhHh---HHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 014688 114 TLFPVWVILGTIIGIYKPSAVTWLETD---LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI 190 (420)
Q Consensus 114 ~~~~l~ii~gv~lgl~~P~~~~~l~~~---~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l 190 (420)
....+++++|.+++.+.....+++++. .....+-.-...+|.++++.|+.+.-. +.+.... ......=++++.+
T Consensus 27 ~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~--~~~~~~~-~~v~~~~~~~~~l 103 (305)
T PF03601_consen 27 GALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGW--KGLLIII-IVVILTFLLTYWL 103 (305)
T ss_pred cHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCc--cHHHHHH-HHHHHHHHHHHHH
Confidence 456788999999996222222333322 223566667778999999999987543 2333332 2333344556677
Q ss_pred H-HHhCCchhh----hhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 191 A-MTLKLSAPL----ATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLL 252 (420)
Q Consensus 191 ~-~~~~l~~~l----a~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll 252 (420)
+ +.+++|++. +.|.-+|+.+-....+++. +--+-|+++++.++.+-..++++..|.+-.++
T Consensus 104 g~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i-~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 104 GRRLFGLDRKLAILIAAGTSICGASAIAATAPVI-KAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHHhCCCHHHHHHHHhhcccchHHHHHHHcccc-cCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 7 999998863 4454455444444444433 23467788999999999999999999988765
No 23
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.93 E-value=0.89 Score=49.84 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhccch---hhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 014688 115 LFPVWVILGTIIGIYKPSA---VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIA 191 (420)
Q Consensus 115 ~~~l~ii~gv~lgl~~P~~---~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~ 191 (420)
.....+++|+++|-...+. ...+. .+..+.+.++||..|++++++++++..+ +.+..+ ..+.++.-++.+++.
T Consensus 31 ~ilg~ilaGillGP~~lg~i~~~~~i~-~laelGvv~LLF~iGLel~~~~l~~~~~--~~~~~g-~~~v~~t~~~~~~~~ 106 (601)
T PRK03659 31 AVLGYLLAGIAIGPWGLGFISDVDEIL-HFSELGVVFLMFIIGLELNPSKLWQLRR--SIFGVG-AAQVLLSAAVLAGLL 106 (601)
T ss_pred hHHHHHHHHHHhccccccCCCcHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHH
Confidence 3445666788877432111 12222 4567899999999999999999986544 233333 244444333444455
Q ss_pred HHhCCchh--hhhhhhhcccCchhhHHHHHHHHc
Q 014688 192 MTLKLSAP--LATGLILVSCCPGGQASNVATYIS 223 (420)
Q Consensus 192 ~~~~l~~~--la~GliLla~~P~~~~s~v~t~la 223 (420)
..++.+.. +..|+.+ +.+.++....++..+-
T Consensus 107 ~~~g~~~~~a~~~g~~l-a~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 107 MLTDFSWQAAVVGGIGL-AMSSTAMALQLMREKG 139 (601)
T ss_pred HHHccCHHHHHHHHHHH-HHHHHHHHHHHHHHcc
Confidence 55665543 3334322 2233333344555443
No 24
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=96.71 E-value=0.082 Score=47.81 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 014688 114 TLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMT 193 (420)
Q Consensus 114 ~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~ 193 (420)
-++.-.++++.++......... ..+........++-..+|.+++.+++++..+.........+...++.=..++.+.+.
T Consensus 22 ~~llG~mi~~~~~~~~~~~~~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 22 AWLLGPLLAGAVLSLAGGLEIT-LPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHHHHHHHHHHHHhcCCccCC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554322111 112345566777778999999999999988876655555555555555667777787
Q ss_pred hCCchhhhhhhhhcccCchhhHHH-HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014688 194 LKLSAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKL 251 (420)
Q Consensus 194 ~~l~~~la~GliLla~~P~~~~s~-v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~l 251 (420)
.+.|..- .+++++|||..-. ..+...|.|...-.....+=.+.-.+..|++..+
T Consensus 101 ~~~~~~t----a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 101 TGVDPLT----AFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HCCCHHH----HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776643 3578999997776 4588889999999999988888888888887654
No 25
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.41 E-value=1 Score=43.82 Aligned_cols=169 Identities=20% Similarity=0.278 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHhccch---hhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHH-H-HHHH
Q 014688 115 LFPVWVILGTIIGIYKPSA---VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKP-M-LGFV 189 (420)
Q Consensus 115 ~~~l~ii~gv~lgl~~P~~---~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~P-l-la~~ 189 (420)
.....+++|+++|-..-+. ..+++ ......+.++||..|++++.+++++..++ ....+. ..+ +.| . +++.
T Consensus 18 ~~v~~il~GillGp~~lg~i~~~~~~~-~l~~igl~~llF~~Gl~~d~~~l~~~~~~--~~~~~~-~~~-~~~~~~~~~~ 92 (273)
T TIGR00932 18 SVLGYLLAGVLIGPSGLGLISNVEGVN-HLAEFGVILLMFLIGLELDLERLWKLRKA--AFGVGV-LQV-LVPGVLLGLL 92 (273)
T ss_pred HHHHHHHHHHHhCcccccCCCChHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHHH-HHH-HHHHHHHHHH
Confidence 4556677888888432111 12333 56778899999999999999999887654 222222 222 345 2 2344
Q ss_pred HHHHhCCchh--hhhhhhhcccCchhhHHHHHHHH--cCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccChHHH
Q 014688 190 IAMTLKLSAP--LATGLILVSCCPGGQASNVATYI--SKGNV-ALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGL 264 (420)
Q Consensus 190 l~~~~~l~~~--la~GliLla~~P~~~~s~v~t~l--agGn~-~Lav~~t~istlla~~~~Pl~l~ll~G~~v~id~~~l 264 (420)
+.+.++.+.. +..|.++...+|+. ...++..+ .+.+. .+......++-+.+++.+-+......+.. .+....
T Consensus 93 ~~~~~~~~~~~~~~lg~~ls~Ts~~v-~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~ 169 (273)
T TIGR00932 93 LGHLLGLALGAAVVIGIILALSSTAV-VVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVAL 169 (273)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhHHHH-HHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHH
Confidence 5556664432 33333333222221 11222222 22232 24455566777778777666655443321 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014688 265 AISTFQVVLVPTVVGVLANEFFPKFTS 291 (420)
Q Consensus 265 ~~~ll~~VllPlllG~llr~~~p~~~~ 291 (420)
...+...+..-+..+.+.|+..+...+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
T TIGR00932 170 ALLLLKVFLAFLLLVLLGRWLLRPVLR 196 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333344455555555444333
No 26
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.38 E-value=0.098 Score=53.36 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHH--hH-HHHHHHhhhhhHHHHHHHHHHHHHHHhhhh--hHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 014688 271 VVLVPTVVGVLANEF--FP-KFTSKIISVTPLIGVILTTLLCASPIGQVS--AVLKTQGAQLIFPVALLHAAAFALGYWL 345 (420)
Q Consensus 271 ~VllPlllG~llr~~--~p-~~~~ri~~~~~~is~l~lill~~~~~a~~~--~~l~~~~~~ill~~~ll~~~~f~lG~ll 345 (420)
-+++=+++|++++++ ++ +..+.+.+.. --+++=.+++..++... +.+ ...+.+.....+...+++.+++.+
T Consensus 8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv---~~~~lP~liF~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGILDPEASKGLSKLV---FNVFLPALIFSSIANTDTLEDL-LSLWFIPVFAFIIFILGLLLGFLL 83 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 355556889988876 22 2222332222 11222222333333321 111 122334445556677888899999
Q ss_pred hhc-CCCccCcceehhhhhhchH-HHHHHHHHHhcCCc
Q 014688 346 SKI-SFGESTSRTISIECGMQSS-ALGFLLAQKHFTNP 381 (420)
Q Consensus 346 ~r~-~l~~~~~~tlsi~~G~rNs-~Lal~lA~~~F~~p 381 (420)
.|. +.+++++......++..|+ .+++++....|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~ 121 (385)
T PF03547_consen 84 SRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGER 121 (385)
T ss_pred HHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcch
Confidence 886 6677777777788899999 68999999999753
No 27
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.31 E-value=2.1 Score=46.30 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhccchh---hhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 014688 115 LFPVWVILGTIIGIYKPSAV---TWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIA 191 (420)
Q Consensus 115 ~~~l~ii~gv~lgl~~P~~~---~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~ 191 (420)
.....+++|+++|-...... .++. .+..+.+.++||..|++++++++++.. +....+...++++.-++++++.
T Consensus 32 ~ivg~IlaGillGp~~lg~~~~~~~~~-~la~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~ 107 (558)
T PRK10669 32 PLVGYLLAGVLAGPFTPGFVADTKLAP-ELAELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALS 107 (558)
T ss_pred HHHHHHHHHHhhCccccccccchHHHH-HHHHHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888886543321 2232 567789999999999999999997652 3333344456555555666677
Q ss_pred HHhCCch
Q 014688 192 MTLKLSA 198 (420)
Q Consensus 192 ~~~~l~~ 198 (420)
+.++.+.
T Consensus 108 ~~~~~~~ 114 (558)
T PRK10669 108 AVLGWSL 114 (558)
T ss_pred HHhCCCH
Confidence 7776543
No 28
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.16 E-value=3.1 Score=47.54 Aligned_cols=51 Identities=18% Similarity=0.445 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHh
Q 014688 140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPML-GFVIAMTL 194 (420)
Q Consensus 140 ~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Pll-a~~l~~~~ 194 (420)
.+..+.+.++||..|++++++.+++..|+ .+..++ ..+ +.|++ +++++..+
T Consensus 106 ~la~lGlillmFliGLE~Dl~~lr~~~k~--a~~ia~-~~~-ilpf~lg~~~~~~l 157 (832)
T PLN03159 106 TMANLGLLYFLFLVGVEMDISVIRRTGKK--ALAIAI-AGM-ALPFCIGLAFSFIF 157 (832)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHhcchH--HHHHHH-HHH-HHHHHHHHHHHHHH
Confidence 46778999999999999999999865543 333333 222 34553 44444443
No 29
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.99 E-value=3 Score=45.21 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhccch-----hhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcC
Q 014688 115 LFPVWVILGTIIGIYKPSA-----VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN 168 (420)
Q Consensus 115 ~~~l~ii~gv~lgl~~P~~-----~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~ 168 (420)
.....+++|+++|-..+.. .... .......+.++||..|++++.+++++..+.
T Consensus 32 ~ll~~il~GillGp~~lg~i~~~~~~~~-~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~ 89 (562)
T PRK05326 32 SLLLFLAIGMLAGEDGLGGIQFDNYPLA-YLVGNLALAVILFDGGLRTRWSSFRPALGP 89 (562)
T ss_pred HHHHHHHHHHHhCccccCCcccCcHHHH-HHHHHHHHHHHHHcCccCCCHHHHHHHHHH
Confidence 4556777899888654331 1122 256788999999999999999999977664
No 30
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.29 E-value=1.3 Score=45.23 Aligned_cols=135 Identities=15% Similarity=0.121 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhc-cchhhhhhHh---HHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 014688 115 LFPVWVILGTIIGIYK-PSAVTWLETD---LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI 190 (420)
Q Consensus 115 ~~~l~ii~gv~lgl~~-P~~~~~l~~~---~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l 190 (420)
...+++++|.+++... |+...+.++. .....+-.-...+|.+++++|+.+.-. +.+......-. ..=++++.+
T Consensus 33 ~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~--~~l~~~~~~v~-~~~~~~~~~ 109 (335)
T TIGR00698 33 ALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGP--NEIVADTLILT-STFFLTVFL 109 (335)
T ss_pred HHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhH--HHHHHHHHHHH-HHHHHHHHH
Confidence 4457888888888743 3222222211 223556666778899999999976543 23333222111 222334555
Q ss_pred H-HHhCCchhh----hhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014688 191 A-MTLKLSAPL----ATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (420)
Q Consensus 191 ~-~~~~l~~~l----a~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~ 253 (420)
+ +.+++|++. +.|.-+|+++-....+++. +--+-|+++++..+.+-..++++..|.+..++.
T Consensus 110 g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i-~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 110 GSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI-KAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc-CCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 5 789988763 3444444444433333333 234567789999999999999999999887653
No 31
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.03 E-value=0.96 Score=45.89 Aligned_cols=134 Identities=21% Similarity=0.222 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhccchhhhhh--HhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Q 014688 115 LFPVWVILGTIIGIYKPSAVTWLE--TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAM 192 (420)
Q Consensus 115 ~~~l~ii~gv~lgl~~P~~~~~l~--~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~ 192 (420)
...+++++|++++.+......+-. .......+-+-....|.++++.|+.+.--+ .+.. ........=++++.+++
T Consensus 39 al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~--~v~~-~~~~l~~t~~~~~~lg~ 115 (334)
T COG2855 39 ALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGS--GVLI-IAITLSSTFLFAYFLGK 115 (334)
T ss_pred HHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCcc--HHHH-HHHHHHHHHHHHHHHHH
Confidence 467888999999944333212111 023345555666678999999999876443 2222 12233333467888999
Q ss_pred HhCCchhhhhhhhhcccCchhhHHHHH----HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 193 TLKLSAPLATGLILVSCCPGGQASNVA----TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLL 252 (420)
Q Consensus 193 ~~~l~~~la~GliLla~~P~~~~s~v~----t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll 252 (420)
.+++|...+. ++-+++.=||.+...- ..--+-|++.++..+.+-..++.+..|.+..++
T Consensus 116 ~lgld~~~a~-Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 116 LLGLDKKLAL-LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred HhCCCHHHHH-HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence 9999886533 3334444444444332 234456778888888888888889999987765
No 32
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.02 E-value=3.5 Score=46.61 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHhccchhh---h-----hhHhHHHHHHHHHHHHhccCCChHHHHHHhcCch
Q 014688 114 TLFPVWVILGTIIGIYKPSAVT---W-----LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPW 170 (420)
Q Consensus 114 ~~~~l~ii~gv~lgl~~P~~~~---~-----l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~ 170 (420)
....+++++|+++|...-.... | +...+.-+++.+.+|..|++++.+.+++.++.+.
T Consensus 39 s~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~ 103 (810)
T TIGR00844 39 GESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVT 103 (810)
T ss_pred cHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH
Confidence 4456777788888875322211 1 0001344789999999999999999987766543
No 33
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=94.81 E-value=0.3 Score=49.10 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014688 116 FPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLK 195 (420)
Q Consensus 116 ~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~ 195 (420)
..+.+++|.++|.+.++..+.++ +-.+..+.+..|.+|.+++++++.+.- +..+..++.. .++.=.+++.+.++++
T Consensus 169 lilpILiGmilGNld~~~~~~l~-~Gi~f~I~f~~f~LG~~lnl~~I~~~G--~~GIlL~v~v-v~~t~~~~~~i~rllg 244 (312)
T PRK12460 169 ALLPLVLGMILGNLDPDMRKFLT-KGGPLLIPFFAFALGAGINLSMLLQAG--LAGILLGVLV-TIVTGFFNIFADRLVG 244 (312)
T ss_pred HHHHHHHHHHHhccchhhHHHHh-ccceEeHHHHHHHhcCCeeHHHHHHhC--hHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 45667788888887776555554 445558888889999999999997653 2345554432 2344455677778887
Q ss_pred Cchhhhhhhhhc---ccCchhhHHH-HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014688 196 LSAPLATGLILV---SCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (420)
Q Consensus 196 l~~~la~GliLl---a~~P~~~~s~-v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~ 253 (420)
.++... ..+- +.+=|+++.. ...-..+..++.|...+..+.+...++.|++..++.
T Consensus 245 ~~~~~g--~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 245 GTGIAG--AAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred CChhHH--HHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776542 2222 1111111111 122233345556666666666666666676666553
No 34
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=94.68 E-value=0.93 Score=45.39 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHH-HHH--hH-HHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhH-HhhhhhhHHHHHHHHHHHHHHHHHH
Q 014688 270 QVVLVPTVVGVLA-NEF--FP-KFTSKIISVTPLIGVILTTLLCASPIGQVSAV-LKTQGAQLIFPVALLHAAAFALGYW 344 (420)
Q Consensus 270 ~~VllPlllG~ll-r~~--~p-~~~~ri~~~~~~is~l~lill~~~~~a~~~~~-l~~~~~~ill~~~ll~~~~f~lG~l 344 (420)
.-+++-+.+|+++ |+. ++ +..+.+.+..-.+..= .+.+..+.+.... ........+..........+.++|.
T Consensus 11 lpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP---~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (321)
T TIGR00946 11 LPILVVILLGYILGKRFGILDEEHASGINRFVINFALP---LTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIWL 87 (321)
T ss_pred HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677899999 774 22 3333343332222211 1122222221110 0111122223333445566788888
Q ss_pred Hhh-c-CCCccCcceehhhhhhchH-HHHHHHHHHhcCCc
Q 014688 345 LSK-I-SFGESTSRTISIECGMQSS-ALGFLLAQKHFTNP 381 (420)
Q Consensus 345 l~r-~-~l~~~~~~tlsi~~G~rNs-~Lal~lA~~~F~~p 381 (420)
++| . +.+++++.+..+.++..|+ -+|++++...|++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~ 127 (321)
T TIGR00946 88 ITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEE 127 (321)
T ss_pred HHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhccc
Confidence 888 4 5666677777788888998 58999999999643
No 35
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=94.55 E-value=0.99 Score=43.17 Aligned_cols=91 Identities=22% Similarity=0.178 Sum_probs=70.0
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHH
Q 014688 160 EDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTI 239 (420)
Q Consensus 160 ~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istl 239 (420)
++.+...+|++.+..+....-++--+..+.++++++++++....+.-=+. +++...-.++..|||.++++..+.++-+
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSV--TtpiAi~is~~iGG~~sLta~~VvitGi 145 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSV--TTPIAIEISEQIGGIPSLTAVFVVITGI 145 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHh--hHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 44455556677788888777777777888999999999987665542221 2233334699999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 014688 240 GAIVMTPLLTKLL 252 (420)
Q Consensus 240 la~~~~Pl~l~ll 252 (420)
++...-|.+++++
T Consensus 146 ~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 146 LGAVLGPPLLKLL 158 (215)
T ss_pred HHHHhHHHHHhHc
Confidence 9999999999885
No 36
>PRK09903 putative transporter YfdV; Provisional
Probab=94.54 E-value=1.4 Score=44.19 Aligned_cols=111 Identities=9% Similarity=0.146 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--hH-HHHHHHhhhhhHHHHHHHHHHHHHHHhhh-hhHHhhhhhhHHHHHHHHHHHHHHHH
Q 014688 267 STFQVVLVPTVVGVLANEF--FP-KFTSKIISVTPLIGVILTTLLCASPIGQV-SAVLKTQGAQLIFPVALLHAAAFALG 342 (420)
Q Consensus 267 ~ll~~VllPlllG~llr~~--~p-~~~~ri~~~~~~is~l~lill~~~~~a~~-~~~l~~~~~~ill~~~ll~~~~f~lG 342 (420)
....-+++=+.+|++.||. .+ +..+.+.+..-.+..= .+++....+. .+...+ .........+.....+.++
T Consensus 7 ~~ilpif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lP---alif~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 7 GDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALP---AALFVSITRANREMIFA-DTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHHHHHhCCHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence 3344455666889998874 22 2333333332222111 1111212221 111111 2233344444555566677
Q ss_pred HHHhhc--CCCccCcceehhhhhhchH-HHHHHHHHHhcCCc
Q 014688 343 YWLSKI--SFGESTSRTISIECGMQSS-ALGFLLAQKHFTNP 381 (420)
Q Consensus 343 ~ll~r~--~l~~~~~~tlsi~~G~rNs-~Lal~lA~~~F~~p 381 (420)
|.++|+ +.+.+++....+.++..|+ -+|+++....|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~ 124 (314)
T PRK09903 83 WFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDS 124 (314)
T ss_pred HHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHcCch
Confidence 777654 4444555567777788888 59999999999654
No 37
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.31 E-value=1.7 Score=43.89 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHH-H
Q 014688 141 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNV-A 219 (420)
Q Consensus 141 ~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v-~ 219 (420)
.....-.++=...|.+++.+++++..|.-.......+......=+.++++.++.+.|. .-.+++.+|||..... .
T Consensus 205 l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~ 280 (318)
T PF05145_consen 205 LVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALI 280 (318)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHH
Confidence 4455556666789999999999887765444444444445555566777777776654 4567899999988774 5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014688 220 TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (420)
Q Consensus 220 t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~ 253 (420)
+...|.|+++......+=.+.-+++.|++..++.
T Consensus 281 A~~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~~~ 314 (318)
T PF05145_consen 281 ALALGADVAFVAAHQVVRLLFVLLLAPFIARWLR 314 (318)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988888889998887764
No 38
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=94.24 E-value=1.2 Score=42.98 Aligned_cols=89 Identities=12% Similarity=0.213 Sum_probs=69.0
Q ss_pred hHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHH---HHHHHcCCChHHHHHHHH
Q 014688 159 FEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTT 235 (420)
Q Consensus 159 ~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~---v~t~lagGn~~Lav~~t~ 235 (420)
.++.+...+|++.+..+...--++--..++.++++++++++....+ .|=....+ -.++..|||.++++..++
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl-----~pkSvTtpiAm~vs~~iGG~~sLta~~vv 151 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASL-----LPKSVTTPIAMHVSEMIGGIPAVTAVFVI 151 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHh-----hhHHhhHHHHHHHHHHhCChHHHHHHHHH
Confidence 3455555566677777776666666678889999999998876643 44444444 469999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014688 236 CSTIGAIVMTPLLTKLL 252 (420)
Q Consensus 236 istlla~~~~Pl~l~ll 252 (420)
++-+++..+-|.+++++
T Consensus 152 itGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 152 LTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999886
No 39
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=93.94 E-value=2.1 Score=41.37 Aligned_cols=87 Identities=9% Similarity=0.145 Sum_probs=69.4
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHH---HHHHHcCCChHHHHHHHHHH
Q 014688 161 DFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTCS 237 (420)
Q Consensus 161 ~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~---v~t~lagGn~~Lav~~t~is 237 (420)
+++...++++.+..++.+--++--+.++.++++++++++....+ .|=....+ -.++..||+.++++..+.++
T Consensus 85 q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl-----~pKSVTtPIAm~is~~iGG~psLtA~~Viit 159 (232)
T PRK04288 85 KRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM-----LPQAATTAIALPVSAGIGGIKEITSFAVIFN 159 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH-----hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 34444456677888887777777788999999999999765554 45444444 46999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 014688 238 TIGAIVMTPLLTKLL 252 (420)
Q Consensus 238 tlla~~~~Pl~l~ll 252 (420)
-+.+.++-|.+++++
T Consensus 160 Gi~Gai~g~~llk~~ 174 (232)
T PRK04288 160 AVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999886
No 40
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.90 E-value=12 Score=37.92 Aligned_cols=131 Identities=21% Similarity=0.368 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhccchhh--hhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHH-HHHHHHHHHHHHHHHHHHHH
Q 014688 116 FPVWVILGTIIGIYKPSAVT--WLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTV-GIGFLAQYLIKPMLGFVIAM 192 (420)
Q Consensus 116 ~~l~ii~gv~lgl~~P~~~~--~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l-~~~l~~~~vl~Plla~~l~~ 192 (420)
+--.+++|++.|-+-|++.+ .+.+.+.-..+.++||++|+..+.+|+..+- .+ .-+-+.|..+.-++++++.+
T Consensus 33 LVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk----~iAipgAl~qia~at~lg~gL~~ 108 (408)
T COG4651 33 LVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVK----AIAIPGALAQIALATLLGMGLSS 108 (408)
T ss_pred hHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHH----HHhcchHHHHHHHHHHHHhHHHH
Confidence 34467789999988887642 2333466788999999999999999997532 22 23556788888889999998
Q ss_pred HhCCchhhhhhhhhcccCchhhHHHHH-HHHcCCCh-------HHH-HHHHHHHHHHHHHHHHHHHHHh
Q 014688 193 TLKLSAPLATGLILVSCCPGGQASNVA-TYISKGNV-------ALS-VLMTTCSTIGAIVMTPLLTKLL 252 (420)
Q Consensus 193 ~~~l~~~la~GliLla~~P~~~~s~v~-t~lagGn~-------~La-v~~t~istlla~~~~Pl~l~ll 252 (420)
..+++- -.|++.=-|...++.+... +.+-++-. +.. ..+.=+..++..+..|.+-..+
T Consensus 109 ~lgws~--~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~ 175 (408)
T COG4651 109 LLGWSF--GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVL 175 (408)
T ss_pred HcCCCc--ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhh
Confidence 887543 2333333344444444433 44444322 211 1223344556666777765554
No 41
>PRK10711 hypothetical protein; Provisional
Probab=92.68 E-value=1.2 Score=42.95 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=69.9
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHH---HHHHHcCCChHHHHHHHHH
Q 014688 160 EDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTC 236 (420)
Q Consensus 160 ~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~---v~t~lagGn~~Lav~~t~i 236 (420)
++.+...++++.+..+...--++--..++.+++++++++++...+. |=....+ -.++..||+.++++..+++
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~-----pkSVTtPIAm~is~~iGG~~sLta~~Vii 153 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASIL-----PKSVTTPIAMAVGGSIGGIPAISAVCVIF 153 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh-----hhhhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3344444566778888777777777889999999999998766553 4444444 4699999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 014688 237 STIGAIVMTPLLTKLL 252 (420)
Q Consensus 237 stlla~~~~Pl~l~ll 252 (420)
+-+.+.+.-|.+++++
T Consensus 154 tGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 154 VGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999999886
No 42
>COG0679 Predicted permeases [General function prediction only]
Probab=92.53 E-value=4.5 Score=40.57 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CCCccCcceehhhhhhchH-HHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 014688 328 IFPVALLHAAAFALGYWLSKI--SFGESTSRTISIECGMQSS-ALGFLLAQKHFTNPLVAVPSAVSVVCMA 395 (420)
Q Consensus 328 ll~~~ll~~~~f~lG~ll~r~--~l~~~~~~tlsi~~G~rNs-~Lal~lA~~~F~~pl~avP~~v~~~~q~ 395 (420)
+...+......++++++++|+ +.+.+++.......+..|+ -++.+++...|++.-.+..+++....+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~ 137 (311)
T COG0679 67 IVASLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLF 137 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 334444555566667777776 2222233345566777888 5779999999976666666655444443
No 43
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=92.05 E-value=7.7 Score=37.40 Aligned_cols=88 Identities=23% Similarity=0.219 Sum_probs=71.0
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHH---HHHHHcCCChHHHHHHHHH
Q 014688 160 EDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTC 236 (420)
Q Consensus 160 ~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~---v~t~lagGn~~Lav~~t~i 236 (420)
++++...|+|+.+..+.+.--++-=..+++++++++++++.... ..|=....+ -.++..||-.++++..+.+
T Consensus 81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~S-----l~PkSvTTpiAm~vs~~iGGip~ltav~Vi~ 155 (230)
T COG1346 81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILS-----LLPKSVTTPIAMEVSESIGGIPALTAVFVIL 155 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-----hcccccccHHHHHHHHhcCCchHHHHHHHHH
Confidence 55555667788888887776666667889999999999976544 456555555 4599999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 014688 237 STIGAIVMTPLLTKLL 252 (420)
Q Consensus 237 stlla~~~~Pl~l~ll 252 (420)
+-+++-++-|.+++.+
T Consensus 156 tGi~Gavlg~~llk~~ 171 (230)
T COG1346 156 TGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999887
No 44
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=91.40 E-value=24 Score=38.15 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHh--ccchhhhhhH-hHHHHHHHHHHHHhccCCChHHHHHHhcC
Q 014688 116 FPVWVILGTIIGIY--KPSAVTWLET-DLFTIGLGFLMLSMGLTLTFEDFRRCLRN 168 (420)
Q Consensus 116 ~~l~ii~gv~lgl~--~P~~~~~l~~-~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~ 168 (420)
....+++|+++|.. .|.. .+++ ......+..++|..|++++.+++++..+.
T Consensus 25 ~v~lil~Gi~lg~~~~~~~~--~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~ 78 (525)
T TIGR00831 25 PIALILAGLLLGLAGLLPEV--PLDREIVLFLFLPPLLFEAAMNTDLRELRENFRP 78 (525)
T ss_pred HHHHHHHHHHHHhccccCCC--CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34455678888853 2211 0111 24457888999999999999999876653
No 45
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=91.12 E-value=20 Score=37.25 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhccchhh---h---hhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHH-HHHHHHH
Q 014688 115 LFPVWVILGTIIGIYKPSAVT---W---LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY-LIKPMLG 187 (420)
Q Consensus 115 ~~~l~ii~gv~lgl~~P~~~~---~---l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~-vl~Plla 187 (420)
..|--++.|.+.++..|-... | ++..+.++.+..-+-.+|++-+++.+++.-|.- .+.+....-+ ++-=.++
T Consensus 35 ~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~fmliFFttiglsa~~~~lkkgGk~l-~if~~~a~~l~~~Qn~ig 113 (404)
T COG0786 35 CIPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDVFMLIFFATIGLSASFKLLKKGGKKL-AIFLATAAGLAVLQNFIG 113 (404)
T ss_pred cCCcchHHHHHHHHHHHHHHhcceEEEeCCcccccHHHHHHHHHhccccchhHHHhcChhH-HHHHHHHHHHHHHHHHHH
Confidence 466677788877777765432 1 222344555555556899999999998766532 1222111111 1112346
Q ss_pred HHHHHHhCCchhhhh--hhh-hcccC-chhhHHHHHHHHcCCChH--HHHHHHHHHHHHHHH-HHHHHHHHh
Q 014688 188 FVIAMTLKLSAPLAT--GLI-LVSCC-PGGQASNVATYISKGNVA--LSVLMTTCSTIGAIV-MTPLLTKLL 252 (420)
Q Consensus 188 ~~l~~~~~l~~~la~--Gli-Lla~~-P~~~~s~v~t~lagGn~~--Lav~~t~istlla~~-~~Pl~l~ll 252 (420)
..+++++++||.+.. |=+ +.+-= -++.+++.+.++ |-+-+ ++.+..+...+.+.+ =.|+.-++.
T Consensus 114 i~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~-G~~~A~~va~A~ATfGlv~GgliGgpva~~li 184 (404)
T COG0786 114 IGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDL-GAEGATEVAMASATFGLVAGGLIGGPVARWLI 184 (404)
T ss_pred HHHHHHcCccHHHHHHhcceeecCCCchHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhHhcCcHHHHHHH
Confidence 677888888886422 111 11111 122444555555 44433 444444444444443 356655554
No 46
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=89.68 E-value=26 Score=35.80 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=67.6
Q ss_pred HHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCCh
Q 014688 148 FLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNV 227 (420)
Q Consensus 148 l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~ 227 (420)
++++++|.-.|+. -.+.|||..+++...|+.+ +.++..+..++.++..+..+-+.+.+=|.++-.+-++++ -|.
T Consensus 74 LIF~GIGAmtDFg---pllanP~~~llGaaAQ~Gi--f~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA-p~L 147 (360)
T PF03977_consen 74 LIFMGIGAMTDFG---PLLANPKTLLLGAAAQFGI--FATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLA-PHL 147 (360)
T ss_pred HHHHHHhHHHhhH---HHHhCHHHHHHHHHHHHhH--HHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-HHH
Confidence 3445777765554 4568999999999999887 456777777888888888888888876665555555554 233
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 014688 228 ALSVLMTTCS-TIGAIVMTPLLTKLLAG 254 (420)
Q Consensus 228 ~Lav~~t~is-tlla~~~~Pl~l~ll~G 254 (420)
--.++..+-| .-+.++.-|.+++++..
T Consensus 148 lgpIaVaAYsYMaLvPiiqPpimklLtt 175 (360)
T PF03977_consen 148 LGPIAVAAYSYMALVPIIQPPIMKLLTT 175 (360)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence 3333333333 33456677888888763
No 47
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=89.64 E-value=14 Score=37.97 Aligned_cols=109 Identities=13% Similarity=0.184 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHH-
Q 014688 141 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVA- 219 (420)
Q Consensus 141 ~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~- 219 (420)
...+.-.++....|.+++...+++..|.-.......+..+++.=..++++.+..+.|.. ...++.+|||......
T Consensus 238 l~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma~~ 313 (352)
T COG3180 238 LLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMAAI 313 (352)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHHHH
Confidence 34455566777899999999998776654455555555666666677888887776654 3467899999888865
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014688 220 TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (420)
Q Consensus 220 t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~ 253 (420)
+...+-|.++-+++.++=.+.-.+..|.+.+.+.
T Consensus 314 A~~l~ad~a~V~a~q~lRll~il~i~p~l~r~l~ 347 (352)
T COG3180 314 AAALGADPAFVMALQVLRLLFILLLGPALARFLS 347 (352)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666669999999999988888888888877653
No 48
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=89.26 E-value=29 Score=35.78 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=24.7
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014688 257 VPVDAAGLAISTFQVVLVPTVVGVLANEFFPK 288 (420)
Q Consensus 257 v~id~~~l~~~ll~~VllPlllG~llr~~~p~ 288 (420)
..+|...++.+++-++++-++++..++.+..+
T Consensus 162 ~g~~~~~il~NL~Piii~~illa~GL~~~p~~ 193 (372)
T PRK15086 162 AGFDFALILRNLIPVIIFAILLALGLKFIPEK 193 (372)
T ss_pred HhCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888888888888888765433
No 49
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=87.56 E-value=25 Score=32.98 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHH--HHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 118 VWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFED--FRRCL-RNPWTVGIGFLAQYLIKPMLGFVIAMTL 194 (420)
Q Consensus 118 l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~--l~~~l-~~p~~l~~~l~~~~vl~Plla~~l~~~~ 194 (420)
.++++|+++|++......+. ....++.+.+++|.+|+++..++ +++.. .++|.+...+. ..+-.=+.+++...++
T Consensus 3 ~~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~-tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 3 IALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLA-TILGSLLGGLLASLLL 80 (191)
T ss_pred eeHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 35789999999987664433 36889999999999999997663 33333 23444443322 1112222344445555
Q ss_pred CCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHH---HHHHHHHHHHHHHHHH
Q 014688 195 KLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTT---CSTIGAIVMTPLLTKL 251 (420)
Q Consensus 195 ~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~---istlla~~~~Pl~l~l 251 (420)
+.+ ...++.+-+..-==+.|.++-... ++.++....-. .==+++++.+|++.+.
T Consensus 81 ~~~--~~~~lav~sG~GwYSlsg~~i~~~-~~~~~G~iafl~n~~RE~~a~~~~P~~~r~ 137 (191)
T PF03956_consen 81 GLS--LKESLAVASGFGWYSLSGVLITQL-YGPELGTIAFLSNLFREILAIILIPLLARY 137 (191)
T ss_pred cCC--HHHHHHHHccCcHHHhHHHHHHhh-hCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443 333333333332224444442222 33344333222 2235788899998883
No 50
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=85.88 E-value=5 Score=40.36 Aligned_cols=98 Identities=14% Similarity=0.258 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhh-------hHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 014688 271 VVLVPTVVGVLANEFFPKFTSKIISVT-------PLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGY 343 (420)
Q Consensus 271 ~VllPlllG~llr~~~p~~~~ri~~~~-------~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ 343 (420)
..++.+++|++++.++.+..++.++-. -.++++++- . .-+-..+.+.++..++..++.....+.++|
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG----~--~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~ 101 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLG----F--RLSFSDILALGWKGLLIIIIVVILTFLLTY 101 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHC----c--cccHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 356677899999973222222222211 122333321 1 011223445666666667777778889999
Q ss_pred HHh-hc-CCCccCcceehhhhhhchHHHHHHHH
Q 014688 344 WLS-KI-SFGESTSRTISIECGMQSSALGFLLA 374 (420)
Q Consensus 344 ll~-r~-~l~~~~~~tlsi~~G~rNs~Lal~lA 374 (420)
+++ |+ |++++.+.-++-.++..-.+-...++
T Consensus 102 ~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a 134 (305)
T PF03601_consen 102 WLGRRLFGLDRKLAILIAAGTSICGASAIAATA 134 (305)
T ss_pred HHHHHHhCCCHHHHHHHHhhcccchHHHHHHHc
Confidence 999 66 77665544444444444343333333
No 51
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=85.07 E-value=5.6 Score=40.08 Aligned_cols=70 Identities=14% Similarity=0.287 Sum_probs=46.4
Q ss_pred HHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL 194 (420)
Q Consensus 121 i~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~ 194 (420)
++|+++|-+-|+....+. +..+..+.++-|..|.+++++++.+.-- ..+++++... ++.-...+..-+.+
T Consensus 179 iiG~iLGNLD~~~r~fl~-~~~~~lIPF~~f~lGa~inl~~i~~aGl--~GIlLgv~~~-~vtg~~~~~~dr~i 248 (314)
T PF03812_consen 179 IIGMILGNLDPDFRKFLA-PGVPILIPFFGFALGAGINLSNIIKAGL--SGILLGVIVV-VVTGIPLYLADRLI 248 (314)
T ss_pred HHHHHHhcCCHHHHHHHh-cCCCeeeehhhhhhcCCCCHHHHHHhCc--chHHHHHHHH-HHHhHHHHHHHHHH
Confidence 478888888888877665 6677788888899999999999876432 2344554332 23333344444443
No 52
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=84.97 E-value=3 Score=42.40 Aligned_cols=130 Identities=13% Similarity=0.152 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 014688 118 VWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLS 197 (420)
Q Consensus 118 l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~ 197 (420)
+.+++|..+|-+.+..-+... .-.++.+-+..+..|.++++.++.+.- +..+.++. .+.++.+.+.+.+.++++.+
T Consensus 178 lplliG~~lgnl~~~l~~~~~-~Gi~~lLp~~~~~lG~~l~lq~i~~~G--~~GilL~~-~~~~~t~~~~~~~~Rl~~~~ 253 (326)
T PRK05274 178 LPLLVGFILGNLDPELRQFLG-KAVPVLIPFFAFALGNGIDLGTIITAG--LSGILLGV-AVVAVTGIPLYLADRLIGGG 253 (326)
T ss_pred HHHHHHHHHHhHHHhhHHHhc-CCcEEEHHHHHHHHhcceeHhHHHhcC--Ccchhhhh-hHhhccchhhHhHhheeecC
Confidence 455677777776665444433 333446677777889999988876542 23344433 34556677778888888655
Q ss_pred hh---hhhhhhhcccCchhhHH-HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 198 AP---LATGLILVSCCPGGQAS-NVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLL 252 (420)
Q Consensus 198 ~~---la~GliLla~~P~~~~s-~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll 252 (420)
+. .+.+.- .+.+=|+++. ....-..++..+-++..+....+++.++.|++..++
T Consensus 254 ~g~~g~a~~tt-aG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~ 311 (326)
T PRK05274 254 NGVAGAAAGST-AGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWW 311 (326)
T ss_pred CCcchHHHHHH-HHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 221111 1111111111 112222234555555555555555666666665554
No 53
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=84.96 E-value=0.087 Score=53.59 Aligned_cols=162 Identities=23% Similarity=0.391 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhccch----hhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHH--HHH
Q 014688 116 FPVWVILGTIIGIYKPSA----VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPML--GFV 189 (420)
Q Consensus 116 ~~l~ii~gv~lgl~~P~~----~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Pll--a~~ 189 (420)
....+++|+++|...-.. ..+.+ .+....+.++||..|+++|.+++++..++.-. .++ ..+ +.|.. ++.
T Consensus 23 ~i~~i~~Gi~lg~~~~~~~~~~~~~~~-~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~--~~~-~~~-~~~~~~~~~~ 97 (380)
T PF00999_consen 23 IIGYILVGIVLGPSGLGLLEPDNPSFE-LLAEIGLAFLLFEAGLELDIKELRRNWRRALA--LGL-VGF-LLPFILVGFL 97 (380)
T ss_dssp -------------------------S--SSHHHHS--SSHHHHTTGGGG-------------------------------
T ss_pred HHHHHHheeehhhhhhhhccchhhHHH-HHHHHHHHHHHHHHHHhhcccccccccccccc--ccc-cee-eehhhHHHHH
Confidence 445666788777764331 12333 57789999999999999999999887765322 221 122 22332 333
Q ss_pred HHH---HhC--CchhhhhhhhhcccCchhhHHHHH-HHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccChH
Q 014688 190 IAM---TLK--LSAPLATGLILVSCCPGGQASNVA-TYISKGNV-ALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAA 262 (420)
Q Consensus 190 l~~---~~~--l~~~la~GliLla~~P~~~~s~v~-t~lagGn~-~Lav~~t~istlla~~~~Pl~l~ll~G~~v~id~~ 262 (420)
+.. ..+ .......|.++....|+......- ....+++. .+......++.+.+.+...+..... ++....+..
T Consensus 98 ~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~ 176 (380)
T PF00999_consen 98 LSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLG 176 (380)
T ss_dssp ----------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-----------------
T ss_pred HHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-ccccccccc
Confidence 332 233 333456666666666665555442 22223333 3455667778888888877777665 333334443
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014688 263 GLAISTFQVVLVPTVVGVLAN 283 (420)
Q Consensus 263 ~l~~~ll~~VllPlllG~llr 283 (420)
.........+..=.+.|...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~ 197 (380)
T PF00999_consen 177 QLLLSFLWIILIGIVIGLLFG 197 (380)
T ss_dssp ---------------------
T ss_pred chhcchhhhhhhheeeecccc
Confidence 333333333333333344333
No 54
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=84.86 E-value=52 Score=34.09 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=63.6
Q ss_pred HHHHHhccCCChHHHHHHhcCchHHHH-HHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCC
Q 014688 148 FLMLSMGLTLTFEDFRRCLRNPWTVGI-GFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGN 226 (420)
Q Consensus 148 l~mf~~Gl~l~~~~l~~~l~~p~~l~~-~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn 226 (420)
++++++|.-.|+.- .+.|||..++ +...|+.+ +.++..+..+|.+..-+..+-+.+.+=|.++-.+-+.++. |
T Consensus 110 LIFlGIGAMtDFgp---llanP~~~ll~gaaAQ~Gi--F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLAp-~ 183 (399)
T TIGR03136 110 ILFFGIGAMSDISF---ILARPWASITVALFAEMGT--FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLILAK-D 183 (399)
T ss_pred HHHHhccHHhcchH---HHhChHHHHHHHHHHHhhH--HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHhhhh-H
Confidence 34457777665554 4689999888 78889876 3455666677888887888878887766555555455442 2
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 014688 227 VALSVLMTTCS-TIGAIVMTPLLTKLLAG 254 (420)
Q Consensus 227 ~~Lav~~t~is-tlla~~~~Pl~l~ll~G 254 (420)
.--+++..+-| .-+.++.-|-+++++..
T Consensus 184 Llg~IaVAAYsYMaLVPiiqPpimklLtt 212 (399)
T TIGR03136 184 LFVPISIIAYLYLSLTYAGYPYLIKLLVP 212 (399)
T ss_pred hHHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 22222222222 23445667777887763
No 55
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=82.45 E-value=8.6 Score=38.65 Aligned_cols=44 Identities=14% Similarity=0.322 Sum_probs=36.3
Q ss_pred HHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHH
Q 014688 121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRC 165 (420)
Q Consensus 121 i~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~ 165 (420)
++|.++|-+-|+..+.+. +..+..+.++-|..|.+++++++.+.
T Consensus 179 liG~ilGNLD~~~r~fl~-~~~~~lIpFf~FaLGaginl~~i~~a 222 (314)
T TIGR00793 179 LVGFALGNLDPELRDFFS-KAVQTLIPFFAFALGNTIDLGVIIQT 222 (314)
T ss_pred HHHHHHhcCCHHHHHHhc-cCCCeeeehhhhhhcCCCCHHHHHHh
Confidence 478889998888877765 67778888999999999999998654
No 56
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.33 E-value=43 Score=37.02 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchh--hhhhhhhcccCchhhHHHHHH
Q 014688 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASNVAT 220 (420)
Q Consensus 143 ~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~--la~GliLla~~P~~~~s~v~t 220 (420)
...+.+.+..+|+++++..+.+ +|..+....+.-++..++..++.++.++.+.. ...|+. .++.|-.+.+..
T Consensus 271 ~lll~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~---L~~~Gef~~vl~ 344 (621)
T PRK03562 271 GLLLGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVL---LGQGGEFAFVVF 344 (621)
T ss_pred HHHHHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHH---HhccccHHHHHH
Confidence 3556666678899999977753 44444444445677888889999999987654 555653 345566665543
Q ss_pred HHcC--C--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014688 221 YISK--G--NVALSVLMTTCSTIGAIVMTPLLTKL 251 (420)
Q Consensus 221 ~lag--G--n~~Lav~~t~istlla~~~~Pl~l~l 251 (420)
.++. | |.+....++ ...+++.+++|++..+
T Consensus 345 ~~a~~~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~ 378 (621)
T PRK03562 345 GAAQMANVLEPEWAKLLT-LAVALSMAATPLLLVL 378 (621)
T ss_pred HHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 3322 2 333333333 3567777888877654
No 57
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=80.83 E-value=44 Score=30.70 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=41.6
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCccCcceehhhhhhchHHHHHHHHHHh
Q 014688 318 AVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKH 377 (420)
Q Consensus 318 ~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~~l~~~~~~tlsi~~G~rNs~Lal~lA~~~ 377 (420)
+.+...++......++.......++++++|.-++.+...+....+|.+.+.-++.-|...
T Consensus 77 ~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 77 SSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccccCcHHHHHHHHh
Confidence 445566778888888888899999999998313333446666778877776555555544
No 58
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=80.77 E-value=29 Score=37.94 Aligned_cols=88 Identities=11% Similarity=0.166 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 014688 119 WVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFVIAMTLKLS 197 (420)
Q Consensus 119 ~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~-p~~l~~~l~~~~vl~Plla~~l~~~~~l~ 197 (420)
.+++|+++|.+-++. .+...+..+.+-+|++|++.-+.=|+...|+ .+....+++. .+..=++++++.++++++
T Consensus 41 vLfvgl~~G~~g~~i----~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~-~~~~~~~~~~~~~~~g~~ 115 (562)
T TIGR03802 41 SLIVAVLIGQLGIQI----DPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF-AVSGLITVYALAKIFGLD 115 (562)
T ss_pred HHHHHHHHHhcCCCC----ChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHhCCC
Confidence 445666666664432 2234567788888899999988777654444 3444444332 334446678888999999
Q ss_pred hhhhhhhhhcccCc
Q 014688 198 APLATGLILVSCCP 211 (420)
Q Consensus 198 ~~la~GliLla~~P 211 (420)
+..+.|++-=+..-
T Consensus 116 ~~~~~Gl~aGalT~ 129 (562)
T TIGR03802 116 KGTAAGLAAGGLTQ 129 (562)
T ss_pred HHHHHHHHhchhhc
Confidence 99999988555443
No 59
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=79.61 E-value=41 Score=36.04 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=23.4
Q ss_pred HHHHHH-HHHHHHHHhCCchhhhhhhhhcccCch
Q 014688 180 YLIKPM-LGFVIAMTLKLSAPLATGLILVSCCPG 212 (420)
Q Consensus 180 ~vl~Pl-la~~l~~~~~l~~~la~GliLla~~P~ 212 (420)
|-.+|+ ++|-.++-|+.+|.++..+-..-+.|.
T Consensus 158 FyFLPi~v~~saak~f~~np~lg~~ig~~L~~P~ 191 (472)
T PRK09796 158 FFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPS 191 (472)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHCcc
Confidence 445676 578888888888887666666666664
No 60
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.53 E-value=60 Score=35.68 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchh--hhhhhhhcccCchhhHHHHH
Q 014688 142 FTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASNVA 219 (420)
Q Consensus 142 ~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~--la~GliLla~~P~~~~s~v~ 219 (420)
-...+.+.+..+|+++++..+.. +|..+....+.-++..++..++.++.++.+.. +..|+. ..|.|-.+.+.
T Consensus 267 ~~lll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~---L~~~Gef~~vl 340 (601)
T PRK03659 267 KGLLLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV---LSQGGEFAFVL 340 (601)
T ss_pred HHHHHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HhccccHHHHH
Confidence 34566677778899999987754 44444444455677888889998988887654 445544 46667666655
Q ss_pred HHHc--CCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 014688 220 TYIS--KGNV-ALSVLMTTCSTIGAIVMTPLLTKL 251 (420)
Q Consensus 220 t~la--gGn~-~Lav~~t~istlla~~~~Pl~l~l 251 (420)
...+ .|-. +-.....+...+++.+++|++..+
T Consensus 341 ~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~ 375 (601)
T PRK03659 341 FSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL 375 (601)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 2211 111122245556666777877654
No 61
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=78.62 E-value=54 Score=30.11 Aligned_cols=88 Identities=22% Similarity=0.348 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhc-------cchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCc--hHHHHHHHHHHHHHHHHHH
Q 014688 118 VWVILGTIIGIYK-------PSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNP--WTVGIGFLAQYLIKPMLGF 188 (420)
Q Consensus 118 l~ii~gv~lgl~~-------P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p--~~l~~~l~~~~vl~Plla~ 188 (420)
-.++.|+++|.+. |....+ .+-...+.+-+++.|++--.+=+ +.+|+. +....+.+. .++-.++++
T Consensus 28 G~L~vgL~~G~~~~~~~~~~~~~~~~---~l~~~GL~lFl~~VGl~aG~~F~-~~l~~~G~~~~~~~~~i-~~~~~~~~~ 102 (169)
T PF06826_consen 28 GVLFVGLILGALGRTGPIFLPISAPS---FLRQLGLALFLAAVGLSAGPGFF-SSLKRGGLKLLLLGVII-TLVPLLIAL 102 (169)
T ss_pred HHHHHHHHHHHhhhccCCCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH-HHHHHHHHH
Confidence 4567888888884 443322 34567777778888888776544 444443 344445433 334455677
Q ss_pred HHHH-HhCCchhhhhhhhhcccC
Q 014688 189 VIAM-TLKLSAPLATGLILVSCC 210 (420)
Q Consensus 189 ~l~~-~~~l~~~la~GliLla~~ 210 (420)
.+++ ++++|+....|.+-=+..
T Consensus 103 ~~~~~~~~l~~~~~~G~~aGa~T 125 (169)
T PF06826_consen 103 VIGRYLFKLNPGIAAGILAGALT 125 (169)
T ss_pred HHHHHHcCCCHHHHHHHHHcccc
Confidence 8887 899999998887654433
No 62
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=77.40 E-value=13 Score=32.74 Aligned_cols=89 Identities=25% Similarity=0.261 Sum_probs=51.8
Q ss_pred CcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcC-----chHHHHHH
Q 014688 102 MSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN-----PWTVGIGF 176 (420)
Q Consensus 102 ~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~-----p~~l~~~l 176 (420)
|+.++.+++|+.+.=-+=++.|+++|-.+-.....+..+.+.+.+. +..-| .+++++.-.+.. .+......
T Consensus 1 m~mlkeFkeF~~RGNVvDLAVgVIIGaAFg~IV~SlV~diImPlIg--~~~gg--~dfs~l~~~l~~~~~~i~yG~Fi~~ 76 (130)
T COG1970 1 MSMLKEFKEFALRGNVVDLAVGVIIGAAFGKIVTSLVNDIIMPLIG--LLVGG--LDFSNLFITLGIPAVVIAYGAFIQA 76 (130)
T ss_pred CcHHHHHHHHHHccChhhHHHHHHhHHHHHHHHHHHHHHHHHhhhh--hhcCC--cChhhheeecCCCceeeeHhHHHHH
Confidence 5678899999854333333344444444433333222256666666 22233 777777655542 23445666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 014688 177 LAQYLIKPMLGFVIAMTL 194 (420)
Q Consensus 177 ~~~~vl~Plla~~l~~~~ 194 (420)
++||++.-...|.+.+..
T Consensus 77 vinFlIiAf~iFl~Vk~i 94 (130)
T COG1970 77 VINFLIIAFAIFLVVKAI 94 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789998888777777654
No 63
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=76.14 E-value=92 Score=33.71 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCch--hhhhhhhhcccCchhhHHHHHH
Q 014688 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSA--PLATGLILVSCCPGGQASNVAT 220 (420)
Q Consensus 143 ~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~--~la~GliLla~~P~~~~s~v~t 220 (420)
...+.+.+...|+++++..+.+ ++..+...++..++...+..++.++.++.+. .+..|+.+ ++.|..+.+..
T Consensus 279 ~~f~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l---~~~Gef~lii~ 352 (558)
T PRK10669 279 DAFAVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASL---AQIGEFAFILA 352 (558)
T ss_pred HHHHHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH---hcccchHHHHH
Confidence 3455566668899999887754 3333333444456666777777777776543 35555554 34444444432
Q ss_pred HH--cCCChH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014688 221 YI--SKGNVA-LSVLMTTCSTIGAIVMTPLLTKL 251 (420)
Q Consensus 221 ~l--agGn~~-Lav~~t~istlla~~~~Pl~l~l 251 (420)
.+ ..|-.. -......+.++++.+++|++...
T Consensus 353 ~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 353 GLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222221 12223445556666667766543
No 64
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=75.12 E-value=67 Score=35.14 Aligned_cols=102 Identities=18% Similarity=0.293 Sum_probs=52.7
Q ss_pred HHHHHHHHHhccCCChHHHHHHhcC--chHHHHHHHHHHHHHH-HHHHHHH-HHhCCchhhhhhhhhcccCchhhHHHHH
Q 014688 144 IGLGFLMLSMGLTLTFEDFRRCLRN--PWTVGIGFLAQYLIKP-MLGFVIA-MTLKLSAPLATGLILVSCCPGGQASNVA 219 (420)
Q Consensus 144 ~~L~l~mf~~Gl~l~~~~l~~~l~~--p~~l~~~l~~~~vl~P-lla~~l~-~~~~l~~~la~GliLla~~P~~~~s~v~ 219 (420)
..+.+-+++.|++--.+=+. .+++ .+....+.++ .+.| ++++.++ +++++++....|.+ .++.-.++.-...
T Consensus 452 ~GL~lFla~vG~~aG~~f~~-~l~~~G~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~~-aG~~t~t~~l~~a 527 (562)
T TIGR03802 452 LGLALFIAVVGLSAGPQAVT-AIKEMGLTLFLLGIVV--TILPLIITMLIGKYVLKYDPALLLGAL-AGARTATPALGAV 527 (562)
T ss_pred HhHHHHHHHHHHhhhHHHHH-HHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHh-hccCCCcHHHHHH
Confidence 44444455666665554444 4444 2233344433 3445 5677777 68999999998884 3333333332333
Q ss_pred HHHcCCC-hHHHHHHH-HHHHHHHHHHHHHHH
Q 014688 220 TYISKGN-VALSVLMT-TCSTIGAIVMTPLLT 249 (420)
Q Consensus 220 t~lagGn-~~Lav~~t-~istlla~~~~Pl~l 249 (420)
....+-| .+.+-+.+ .+++++-++..|+++
T Consensus 528 ~~~~~~~~~~~gYa~~Yp~~~i~~il~~~~iv 559 (562)
T TIGR03802 528 LERAGSSVPALGYTITYALGNVLLTLLGPLIV 559 (562)
T ss_pred HHhcCCCCcccchHhHHHHHHHHHHHHHHHHH
Confidence 4444433 22222222 455555555556544
No 65
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=75.07 E-value=1e+02 Score=31.50 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=58.4
Q ss_pred HHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCC------chhhhhhhhhcccCchhhHHHHHHH
Q 014688 148 FLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKL------SAPLATGLILVSCCPGGQASNVATY 221 (420)
Q Consensus 148 l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l------~~~la~GliLla~~P~~~~s~v~t~ 221 (420)
+++++.|.-.|+. -.+.|||..+++...|+-++ .++..+..++. +..-+..+-+.+.+=|.++-.+-+.
T Consensus 68 LIFlGIGAmtDFg---pllanP~~~llGaaAQ~GiF--~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~~ 142 (354)
T TIGR01109 68 LIFMGIGALTDFG---PLLANPRTLLLGAAAQFGIF--ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSGK 142 (354)
T ss_pred HHHHhccHHhhhH---HHHhChHHHHHHHHHHhhHH--HHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhHhh
Confidence 3445777765555 45689999999999998774 45555666666 4455666666676655444444344
Q ss_pred HcCCChHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 014688 222 ISKGNVALSVLMTTCS-TIGAIVMTPLLTKLLA 253 (420)
Q Consensus 222 lagGn~~Lav~~t~is-tlla~~~~Pl~l~ll~ 253 (420)
++ -|.--+++..+-| .-+.++.-|.+++++.
T Consensus 143 la-p~Llg~IaVAAYsYMaLvPiiqPpimklLt 174 (354)
T TIGR01109 143 LA-PELLAAIAVAAYSYMALVPIIQPPIMKALT 174 (354)
T ss_pred hh-hHHHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence 33 2222222222222 2344566677777775
No 66
>PRK04972 putative transporter; Provisional
Probab=74.43 E-value=85 Score=34.32 Aligned_cols=88 Identities=13% Similarity=0.210 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 014688 120 VILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFVIAMTLKLSA 198 (420)
Q Consensus 120 ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~-p~~l~~~l~~~~vl~Plla~~l~~~~~l~~ 198 (420)
+++|+++|.+-+.. .+......+.+-++++|++--..=+....++ .+....+.+ -.++.-++++.+.+++++++
T Consensus 44 L~vgl~~g~~~~~~----~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 118 (558)
T PRK04972 44 LVVSLLLGQQHFSI----NTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALV-MVGSALVIALGLGKLFGWDI 118 (558)
T ss_pred HHHHHHHHhCCCCC----ChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCH
Confidence 34555555554432 1234456777777788888776665544443 233444433 22333456777888999999
Q ss_pred hhhhhhhhcccCch
Q 014688 199 PLATGLILVSCCPG 212 (420)
Q Consensus 199 ~la~GliLla~~P~ 212 (420)
..+.|++-=+..-+
T Consensus 119 ~~~~G~~aGa~T~t 132 (558)
T PRK04972 119 GLTAGMLAGSMTST 132 (558)
T ss_pred HHHHHHhhccccCc
Confidence 99999875444433
No 67
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=72.23 E-value=1e+02 Score=33.08 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=26.3
Q ss_pred hhhhhchHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014688 360 IECGMQSSALGFLLAQK-HFTNPLVAVPSAVSVVCMALGGSALAVFWRNQP 409 (420)
Q Consensus 360 i~~G~rNs~Lal~lA~~-~F~~pl~avP~~v~~~~q~l~gs~la~~wr~~~ 409 (420)
..+|+.+.-..+.+... .+ +.....|.. ....+.-.|+.++.+.|.|+
T Consensus 313 V~~G~H~~~~pi~~~~ia~~-G~~~l~p~~-~~~~~aq~Ga~lav~lk~K~ 361 (476)
T PRK09586 313 VVFGVHQGFIPVYFALMDSQ-GFNSLFPIL-AMAGAGQVGAALALYWRAQK 361 (476)
T ss_pred hHhccchhhhHHHHHHHHhc-CCChHHHHH-HHHHHHHHHHHHHHHHHHcc
Confidence 45788777544443321 23 233444543 23334457888888877664
No 68
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=72.06 E-value=1.3e+02 Score=31.35 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=57.6
Q ss_pred HHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHh------CCchhhhhhhhhcccCchhhHHHHHHHH
Q 014688 149 LMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL------KLSAPLATGLILVSCCPGGQASNVATYI 222 (420)
Q Consensus 149 ~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~------~l~~~la~GliLla~~P~~~~s~v~t~l 222 (420)
+++++|.-.|+.- .+.|||.++++...|+.++-- +..+..+ +.+..-+..+-+.+.+=|.++-.+-+.+
T Consensus 140 IF~GIGAMtDFgp---LlanP~~~llGaAAQ~GIF~t--~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL 214 (433)
T PRK15477 140 IFMGVGAMTDFGP---LLANPRTLLLGAAAQFGIFAT--VLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL 214 (433)
T ss_pred HHHhccHHhcchH---HhhCHHHHHHHHHHHhhHHHH--HHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence 3457777665554 468999999999999877543 3333333 5566666666677776555444444444
Q ss_pred cCCChHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 014688 223 SKGNVALSVLMTTCS-TIGAIVMTPLLTKLLA 253 (420)
Q Consensus 223 agGn~~Lav~~t~is-tlla~~~~Pl~l~ll~ 253 (420)
+ -|.--+++...-| .-+-++.-|.+++++.
T Consensus 215 A-P~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15477 215 A-PELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred h-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 4 2222222222222 2344566677777775
No 69
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=71.83 E-value=1.3e+02 Score=31.31 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=57.6
Q ss_pred HHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHh------CCchhhhhhhhhcccCchhhHHHHHHHH
Q 014688 149 LMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL------KLSAPLATGLILVSCCPGGQASNVATYI 222 (420)
Q Consensus 149 ~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~------~l~~~la~GliLla~~P~~~~s~v~t~l 222 (420)
+++++|.-.|+.- .+.|||.++++...|+.++-- +..+..+ +.+..-+..+-+.+.+=|.++-.+-+.+
T Consensus 140 IF~GIGAMtDFgp---LlanP~~~llGaAAQ~GIF~t--~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL 214 (433)
T PRK15476 140 IFMGVGAMTDFGP---LLANPRTLLLGAAAQFGIFAT--VLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL 214 (433)
T ss_pred HHHhccHHhcchH---HhhCHHHHHHHHHHHhhHHHH--HHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence 3457777665554 568999999999999877543 3333333 5566666666677776555444444444
Q ss_pred cCCChHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 014688 223 SKGNVALSVLMTTCS-TIGAIVMTPLLTKLLA 253 (420)
Q Consensus 223 agGn~~Lav~~t~is-tlla~~~~Pl~l~ll~ 253 (420)
+ -|.--+++...-| .-+-++.-|.+++++.
T Consensus 215 A-P~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15476 215 A-PELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred h-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 4 2222222222222 2344566677777775
No 70
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=71.31 E-value=1.4e+02 Score=31.23 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=57.7
Q ss_pred HHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHh------CCchhhhhhhhhcccCchhhHHHHHHHH
Q 014688 149 LMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL------KLSAPLATGLILVSCCPGGQASNVATYI 222 (420)
Q Consensus 149 ~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~------~l~~~la~GliLla~~P~~~~s~v~t~l 222 (420)
+++++|.-.|+.- .+.|||.++++...|+.++-- +..+..+ +.+..-+..+-+.+.+=|.++-.+-+.+
T Consensus 140 IF~GIGAMtDFgp---LlanP~~~llGaAAQ~GIF~t--~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL 214 (433)
T PRK15475 140 IFMGVGAMTDFGP---LLANPRTLLLGAAAQFGIFAT--VLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL 214 (433)
T ss_pred HHHhccHHhcchH---HhhCHHHHHHHHHHHhhHHHH--HHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence 3457776655554 568999999999999877543 3333333 5566666666677776555544444444
Q ss_pred cCCChHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 014688 223 SKGNVALSVLMTTCS-TIGAIVMTPLLTKLLA 253 (420)
Q Consensus 223 agGn~~Lav~~t~is-tlla~~~~Pl~l~ll~ 253 (420)
+ -|.--+++...-| .-+.++.-|.+++++.
T Consensus 215 A-P~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15475 215 A-PELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred h-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 4 2222222222222 2344566777788775
No 71
>PRK03818 putative transporter; Validated
Probab=70.91 E-value=1.1e+02 Score=33.51 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhccchhhhhhH----hHHHHHHHHHHHHhccCCChHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHH
Q 014688 117 PVWVILGTIIGIYKPSAVTWLET----DLFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFVIA 191 (420)
Q Consensus 117 ~l~ii~gv~lgl~~P~~~~~l~~----~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~-p~~l~~~l~~~~vl~Plla~~l~ 191 (420)
.-.+++|+++|.+.+..+....+ .+-...+.+-++++|++--..=+....++ .+....+.+. .++--++++++.
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~-~~~~~~~~~~~~ 112 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLI-VILGGLVTAILH 112 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45667888888865433211111 13456777777888888877666544333 2334444333 233345577778
Q ss_pred HHhCCchhhhhhhhhcccC
Q 014688 192 MTLKLSAPLATGLILVSCC 210 (420)
Q Consensus 192 ~~~~l~~~la~GliLla~~ 210 (420)
+++++++..+.|++-=+.+
T Consensus 113 ~~~~~~~~~~~G~~aGa~T 131 (552)
T PRK03818 113 KLFGIPLPVMLGIFSGAVT 131 (552)
T ss_pred HHhCCCHHHHHHHhhcccc
Confidence 8899999988887754443
No 72
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=70.31 E-value=40 Score=34.34 Aligned_cols=130 Identities=25% Similarity=0.296 Sum_probs=78.9
Q ss_pred CCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchh-hhhh---HhHHHHHHHHHHHHhccCCChHHHHHHhc-CchHHHH
Q 014688 100 GGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAV-TWLE---TDLFTIGLGFLMLSMGLTLTFEDFRRCLR-NPWTVGI 174 (420)
Q Consensus 100 ~~~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~-~~l~---~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~-~p~~l~~ 174 (420)
++.++.+-+.|-+.+.-.+.++-|.++|+...+.+ ..++ .+...-.+.+-++-||+.- -+++++..+ .++.+.+
T Consensus 163 ~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~F 241 (327)
T PF05982_consen 163 EGISWGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFKGVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAF 241 (327)
T ss_pred ccccHHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHHHHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHH
Confidence 45667777888888888888899999999976543 2222 2456667777777777743 233333222 1333344
Q ss_pred HHHHHHHHHHHH----HHHHHHHhCCchhhhhhhhhcccCchhhHHHHH--HHHcCCChHHHHHHHH
Q 014688 175 GFLAQYLIKPML----GFVIAMTLKLSAPLATGLILVSCCPGGQASNVA--TYISKGNVALSVLMTT 235 (420)
Q Consensus 175 ~l~~~~vl~Pll----a~~l~~~~~l~~~la~GliLla~~P~~~~s~v~--t~lagGn~~Lav~~t~ 235 (420)
+ +++|++ +++++++.+++..-++-+..++++-+=.+.+.. ..+=+.|..+.+.+..
T Consensus 242 g-----i~~Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SL 303 (327)
T PF05982_consen 242 G-----ILMPLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASL 303 (327)
T ss_pred H-----HHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHH
Confidence 4 467774 555667777777655555555555544455533 4455777777665543
No 73
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=68.09 E-value=1.5e+02 Score=30.55 Aligned_cols=182 Identities=16% Similarity=0.207 Sum_probs=90.2
Q ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHhccchh--hh----hhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHH
Q 014688 105 YEQIIEILT-TLFPVWVILGTIIGIYKPSAV--TW----LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFL 177 (420)
Q Consensus 105 ~~r~~~~l~-~~~~l~ii~gv~lgl~~P~~~--~~----l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~ 177 (420)
+++-.+++. ...|--++.|.+.++..+-.. .+ ++..+....+...+-++|++-+.+.+++..++-........
T Consensus 22 Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~ 101 (368)
T PF03616_consen 22 LRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAI 101 (368)
T ss_pred HHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHH
Confidence 333334553 346777777766444432111 11 22234455555556688999999888776543211111111
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhh--hhhhcccCchhhHHH--HHHHHcC--CChHHHHHHHHHHHHHH-HHHHHHHHH
Q 014688 178 AQYLIKPMLGFVIAMTLKLSAPLAT--GLILVSCCPGGQASN--VATYISK--GNVALSVLMTTCSTIGA-IVMTPLLTK 250 (420)
Q Consensus 178 ~~~vl~Plla~~l~~~~~l~~~la~--GliLla~~P~~~~s~--v~t~lag--Gn~~Lav~~t~istlla-~~~~Pl~l~ 250 (420)
....+-=+++..++.+++++|.+.. |-+=+.-=+|+..+. .+..+.| +-.+++++..++..+.+ ++=.|+.-+
T Consensus 102 ~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~ 181 (368)
T PF03616_consen 102 ILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANW 181 (368)
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233456777888888876422 211222224433333 3443323 33345555556666654 445777555
Q ss_pred Hhc-CC--------c---------------cccChHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014688 251 LLA-GQ--------L---------------VPVDAAGLAISTFQVVLVPTVVGVLANEFFP 287 (420)
Q Consensus 251 ll~-G~--------~---------------v~id~~~l~~~ll~~VllPlllG~llr~~~p 287 (420)
+.- ++ . -+++...+...+. .+.+.+.+|..++.+..
T Consensus 182 lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l~-~i~i~~~~G~~i~~~l~ 241 (368)
T PF03616_consen 182 LIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHLA-LILIAIGLGYIISALLK 241 (368)
T ss_pred HHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 432 10 0 0122334444443 57777888888887653
No 74
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=67.87 E-value=70 Score=29.97 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHH---hhhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 014688 274 VPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVL---KTQGAQLIFPVALLHAAAFALGYWLSKISF 350 (420)
Q Consensus 274 lPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~~a~~~~~l---~~~~~~ill~~~ll~~~~f~lG~ll~r~~l 350 (420)
..+++|.++-++.....+...+ .....+.+++.++....+.+.+.+ ++.+++.+...+.-.+.....|+..++. +
T Consensus 3 ~~li~Gi~lG~~~~~~~~~~~~-~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l-l 80 (191)
T PF03956_consen 3 IALILGILLGYFLRPPFSLIDK-ISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL-L 80 (191)
T ss_pred eeHHHHHHHHHHhccccccccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 3456677666654422111111 222333444444455556554433 3455666655555555566666666766 3
Q ss_pred CccCcceehhhhhhchHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhc
Q 014688 351 GESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRN 407 (420)
Q Consensus 351 ~~~~~~tlsi~~G~rNs~Lal~lA~~~F~~pl~avP~~v~~~~q~l~gs~la~~wr~ 407 (420)
+.+-+.++++..|+-=-++.-++-+... +|....-..+..+..=+..-+...+..|
T Consensus 81 ~~~~~~~lav~sG~GwYSlsg~~i~~~~-~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 81 GLSLKESLAVASGFGWYSLSGVLITQLY-GPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred cCCHHHHHHHHccCcHHHhHHHHHHhhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666677766666655555444 5655444444444444444444444444
No 75
>PRK04972 putative transporter; Provisional
Probab=66.74 E-value=57 Score=35.61 Aligned_cols=87 Identities=14% Similarity=0.288 Sum_probs=48.6
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc--CCCccCcceehhhhhhchHHHHHHHHHHhcCC--cch--HHHHHHH
Q 014688 317 SAVLKTQGAQLIFPVALLHAAAFALGYWLSKI--SFGESTSRTISIECGMQSSALGFLLAQKHFTN--PLV--AVPSAVS 390 (420)
Q Consensus 317 ~~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~--~l~~~~~~tlsi~~G~rNs~Lal~lA~~~F~~--pl~--avP~~v~ 390 (420)
.+.+.+.++.+++..++...+...++++++|. |++.. +.+...+|.+.+.-++.-+...-++ |.+ +..-.+.
T Consensus 465 ~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~~~~~~~gYa~~yp~~ 542 (558)
T PRK04972 465 NNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDTARSNIPALGYAGTYAIA 542 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhhcCCCCcccccHhHHHHH
Confidence 34455567777766666666666677777765 55544 5666677777665444444433333 322 3333344
Q ss_pred HHHHHHHHHHHHHHH
Q 014688 391 VVCMALGGSALAVFW 405 (420)
Q Consensus 391 ~~~q~l~gs~la~~w 405 (420)
.+...+.+-++..+|
T Consensus 543 ~il~~l~~~~iv~~~ 557 (558)
T PRK04972 543 NVLLTLAGTLIVIVW 557 (558)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555556666655443
No 76
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=66.61 E-value=92 Score=28.16 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhccc---hhh---hhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCc--hHHHHHHHHHHHHHHHHHH-
Q 014688 118 VWVILGTIIGIYKPS---AVT---WLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNP--WTVGIGFLAQYLIKPMLGF- 188 (420)
Q Consensus 118 l~ii~gv~lgl~~P~---~~~---~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p--~~l~~~l~~~~vl~Plla~- 188 (420)
-.++.|+++|.+-+. ... -....+-...+.+-++.+|++--.+=+....++. .....+.+... +..++.+
T Consensus 26 G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~-~~~~~~~~ 104 (154)
T TIGR01625 26 GVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITV-VPTLLVAV 104 (154)
T ss_pred HHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHH-HHHHHHHH
Confidence 355678888887641 000 0111244566777777888877666554433433 22222322222 2223333
Q ss_pred HHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcC
Q 014688 189 VIAMTLKLSAPLATGLILVSCCPGGQASNVATYISK 224 (420)
Q Consensus 189 ~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lag 224 (420)
...+++++++....|.+ .++.-.++.-....+..+
T Consensus 105 ~~~~~~~~~~~~~~G~~-aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 105 ALIKLLRINYALTAGML-AGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHhCCCHHHHHHHH-hccccChHHHHHHHHHhc
Confidence 44478899999888884 444433333334444444
No 77
>PRK03818 putative transporter; Validated
Probab=66.56 E-value=1.4e+02 Score=32.59 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhccCCChHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHH-HHhCCchhhhhhhhhcccCchhhHHHHH
Q 014688 143 TIGLGFLMLSMGLTLTFEDFRRCLRN--PWTVGIGFLAQYLIKPMLGFVIA-MTLKLSAPLATGLILVSCCPGGQASNVA 219 (420)
Q Consensus 143 ~~~L~l~mf~~Gl~l~~~~l~~~l~~--p~~l~~~l~~~~vl~Plla~~l~-~~~~l~~~la~GliLla~~P~~~~s~v~ 219 (420)
...+.+-+.+.|++--..=+....+. .+....+.+.. ++..++++.++ +++++++....|.+ .++.-.++.-+..
T Consensus 436 ~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~G~~-aG~~t~tp~l~~a 513 (552)
T PRK03818 436 ELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLIT-AVPLLIVGILARMLAKMNYLTLCGML-AGSMTDPPALAFA 513 (552)
T ss_pred HHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHH-hccCCCcHHHHHH
Confidence 34455555566666555444433343 22333444333 23334566664 77899999888873 4443333333333
Q ss_pred HHH-cCCC-hHHHHHHH-HHHHHHHHHHHHHHHH
Q 014688 220 TYI-SKGN-VALSVLMT-TCSTIGAIVMTPLLTK 250 (420)
Q Consensus 220 t~l-agGn-~~Lav~~t-~istlla~~~~Pl~l~ 250 (420)
+.. .+.| .+.+-+.+ .+++++-++..++++.
T Consensus 514 ~~~~~~~~~~~~gYa~~Yp~~~~~~i~~~~~~~~ 547 (552)
T PRK03818 514 NNLHPTSGAAALSYATVYPLVMFLRIITPQLLAV 547 (552)
T ss_pred hcccCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 443 5555 33333333 4455555555555444
No 78
>COG2855 Predicted membrane protein [Function unknown]
Probab=66.03 E-value=30 Score=35.26 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=26.9
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc-CCCccC
Q 014688 318 AVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGEST 354 (420)
Q Consensus 318 ~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~-~l~~~~ 354 (420)
+.+.+.+...+..........+.++|+++|. |+|++.
T Consensus 86 ~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~ 123 (334)
T COG2855 86 SDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKL 123 (334)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3445567677776777777889999999998 666543
No 79
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=64.06 E-value=2.3e+02 Score=31.07 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhc---cchh-hhhhHh-HHHHHHHHHHHHhccCCChHHHHHHhcCchHH-HHHHHHHHHHHHHHHHHH
Q 014688 117 PVWVILGTIIGIYK---PSAV-TWLETD-LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTV-GIGFLAQYLIKPMLGFVI 190 (420)
Q Consensus 117 ~l~ii~gv~lgl~~---P~~~-~~l~~~-~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l-~~~l~~~~vl~Plla~~l 190 (420)
.+.+++|+++|... +... ..+++. .....+..++|-.|.+++.+++++.++.--.+ ..+.+++.+++-...+.+
T Consensus 39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~ 118 (559)
T TIGR00840 39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI 118 (559)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666888888652 2110 112322 45578889999999999999999887652221 224455555555555554
Q ss_pred HH
Q 014688 191 AM 192 (420)
Q Consensus 191 ~~ 192 (420)
..
T Consensus 119 ~~ 120 (559)
T TIGR00840 119 CL 120 (559)
T ss_pred Hh
Confidence 43
No 80
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=63.33 E-value=10 Score=39.11 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=95.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchh------hhhh---H---hHHHHHHHHHHHHhccCCChHHHHHHhcCchHHH
Q 014688 106 EQIIEILTTLFPVWVILGTIIGIYKPSAV------TWLE---T---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVG 173 (420)
Q Consensus 106 ~r~~~~l~~~~~l~ii~gv~lgl~~P~~~------~~l~---~---~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~ 173 (420)
++++++ -..-++..+++.++|..-|--. +.++ . .+-...+-.++...|-++-..- ++.-.+.|.+.
T Consensus 240 ~~L~~i-~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~-~ss~~~~~~ii 317 (408)
T KOG2722|consen 240 VILKEI-FAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGL-RSSALKTSVII 317 (408)
T ss_pred hhHHHh-cCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCc-hhcccCceEEE
Confidence 344433 3455677777788887655221 1111 1 1334566677778887775433 34444456555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------C-CchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Q 014688 174 IGFLAQYLIKPMLGFVIAMTL------K-LSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTP 246 (420)
Q Consensus 174 ~~l~~~~vl~Plla~~l~~~~------~-l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~P 246 (420)
-..+..++++|+.+.++.... . .||-+...+++..++|++.....+|++-|--..-+......+-..+.+.+-
T Consensus 318 giii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~lt 397 (408)
T KOG2722|consen 318 GIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLT 397 (408)
T ss_pred EEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHH
Confidence 566679999999998886553 1 355688899999999999999999999988877777777777776666555
Q ss_pred HHHHH
Q 014688 247 LLTKL 251 (420)
Q Consensus 247 l~l~l 251 (420)
+|..+
T Consensus 398 vw~~~ 402 (408)
T KOG2722|consen 398 VWSVF 402 (408)
T ss_pred HHHHH
Confidence 54433
No 81
>COG3329 Predicted permease [General function prediction only]
Probab=63.13 E-value=35 Score=34.48 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=53.9
Q ss_pred CcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhh----hhHhHHHHHHHHHHHHhccCCChHHHHHHhcC-chHHHHHH
Q 014688 102 MSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTW----LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGF 176 (420)
Q Consensus 102 ~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~----l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~-p~~l~~~l 176 (420)
.+.||-++|-+-+.-.+.++.|.++|++.-+.+.. +..++..-.+.+.|+-||++-. +++++..+. -+.+.+++
T Consensus 205 v~~~ell~Esflnpal~lllggl~iGlitGe~g~~vl~~F~~~lFqGvL~lflL~MGm~A~-rrl~elrk~g~~~v~fgl 283 (372)
T COG3329 205 VKIWELLQESFLNPALVLLLGGLAIGLITGEQGESVLKPFFDPLFQGVLCLFLLDMGMTAG-RRLKELRKVGQGLVLFGL 283 (372)
T ss_pred hhhHHHHHHHHcCchHHHHHHHHHHhheeccCchhhhhhhhHHHHHHHHHHHHHHHhHHHH-HHHHHHHhcCcceehHHH
Confidence 67788888888888889999999999997443321 1124555667777788888643 333333332 23344443
Q ss_pred HHHHHHHHHH----HHHHHHHhCC
Q 014688 177 LAQYLIKPML----GFVIAMTLKL 196 (420)
Q Consensus 177 ~~~~vl~Pll----a~~l~~~~~l 196 (420)
+.|.+ ++++++..+.
T Consensus 284 -----laPil~g~ig~~lg~~a~y 302 (372)
T COG3329 284 -----LAPILHGFIGLLLGMIAGY 302 (372)
T ss_pred -----HHHHHHHHHHHHHHHHhcc
Confidence 44554 4444444443
No 82
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=61.92 E-value=1.9e+02 Score=29.52 Aligned_cols=230 Identities=18% Similarity=0.227 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccC----CChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH-
Q 014688 119 WVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLT----LTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMT- 193 (420)
Q Consensus 119 ~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~----l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~- 193 (420)
+.++|++.++...+.- +.+......-..+|+.+|++ +.-..+.... .....++... +++|+++|.+.+-
T Consensus 5 FF~LG~~A~~~kSdL~--iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~---~~~~~~~~lg-~liPl~~~~iLr~~ 78 (327)
T PF05982_consen 5 FFILGIIAALLKSDLE--IPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALL---LPLLAAVLLG-ILIPLIAFPILRRL 78 (327)
T ss_pred HHHHHHHHHHHcCCCc--CChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 4457777777754432 11123334444556666664 3333333322 1233344333 4779999988765
Q ss_pred hCCchhhhhhh-hhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHH---HHHHHHHHHHHhcCCc-------------
Q 014688 194 LKLSAPLATGL-ILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG---AIVMTPLLTKLLAGQL------------- 256 (420)
Q Consensus 194 ~~l~~~la~Gl-iLla~~P~~~~s~v~t~lagGn~~Lav~~t~istll---a~~~~Pl~l~ll~G~~------------- 256 (420)
.++|..-+.++ .-.++....+.....+.+..-+.++---|+..-.+. ++++-=++..+..++.
T Consensus 79 ~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~~~~~~ 158 (327)
T PF05982_consen 79 GKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASSTRVGA 158 (327)
T ss_pred cCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCcccccc
Confidence 56776544444 356667777777777777777776666555443322 1111111122222111
Q ss_pred ----cccChHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHhhhhh-HH-HHHHHHHH-HHHHHhhhhhHHhhhh
Q 014688 257 ----VPVDAAGLAISTF-----QVVLVPTVVGVLANEFFPKFTSKIISVTP-LI-GVILTTLL-CASPIGQVSAVLKTQG 324 (420)
Q Consensus 257 ----v~id~~~l~~~ll-----~~VllPlllG~llr~~~p~~~~ri~~~~~-~i-s~l~lill-~~~~~a~~~~~l~~~~ 324 (420)
-+.+..++....+ ..++--+++|++.+. +-.+.+++... .+ +++.+.++ +....++.-..++..+
T Consensus 159 ~~~~~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~---~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g 235 (327)
T PF05982_consen 159 GSGHEGISWGELLHESLTNKSVVLLLGGLIIGFLAGP---EGVESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRKVG 235 (327)
T ss_pred ccccccccHHHHHHHHHcCchHHHHHHHHHHhheeCc---cchhhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHhhh
Confidence 1244555554332 234444455554432 22344445322 22 44433333 3334445555677788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-CCCccCcce
Q 014688 325 AQLIFPVALLHAAAFALGYWLSKI-SFGESTSRT 357 (420)
Q Consensus 325 ~~ill~~~ll~~~~f~lG~ll~r~-~l~~~~~~t 357 (420)
+..+...++++.++-.+|..+++. +++..+..-
T Consensus 236 ~~li~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~l 269 (327)
T PF05982_consen 236 WFLIAFGILMPLINALIGIGLGWLLGLSPGGAVL 269 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHH
Confidence 888888899999988999999887 777665433
No 83
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=59.23 E-value=62 Score=33.07 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=30.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHh-hc-CCCccCcceehhhhhhchHHHHHH
Q 014688 320 LKTQGAQLIFPVALLHAAAFALGYWLS-KI-SFGESTSRTISIECGMQSSALGFL 372 (420)
Q Consensus 320 l~~~~~~ill~~~ll~~~~f~lG~ll~-r~-~l~~~~~~tlsi~~G~rNs~Lal~ 372 (420)
+.+.++..+...+......+.++|+++ |+ |++++.+.-++-.++..-.+-.++
T Consensus 84 i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A 138 (335)
T TIGR00698 84 IADVGPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAA 138 (335)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHH
Confidence 345566666666666667788889998 45 666555444444444443333333
No 84
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=56.61 E-value=3.2e+02 Score=30.44 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhh------hhHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 014688 272 VLVPTVVGVLANEFFPKFTSKIISV------TPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWL 345 (420)
Q Consensus 272 VllPlllG~llr~~~p~~~~ri~~~------~~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll 345 (420)
-++|.++..++-.+.+|+.+|+.|- .|.+.++....+.+..++.....+- .+. ......++...+...|.++
T Consensus 218 sViPiil~v~~~s~iEk~l~K~iP~~l~~i~~P~ltlli~~pl~l~viGPig~~i~-~~l-~~~i~~l~~~~~~i~g~i~ 295 (627)
T PRK09824 218 SVIPIIFSAWLCSILERRLNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLS-ELL-AAGYQWLYQAVPAFAGAVM 295 (627)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHH-HHHHHHHHhhchHHHHHHH
Confidence 3567777777777777776666542 2333333333333333332222111 110 0111122233334444444
Q ss_pred hhcCCCccCcceehhhhhhchHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014688 346 SKISFGESTSRTISIECGMQSSALGFLLAQ-KHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQ 408 (420)
Q Consensus 346 ~r~~l~~~~~~tlsi~~G~rNs~Lal~lA~-~~F~~pl~avP~~v~~~~q~l~gs~la~~wr~~ 408 (420)
+.. ......+|+...-..+.+.. +.++ .....|... .....-.|+.++.+++.|
T Consensus 296 g~~-------~~~lV~~G~H~~l~pi~~~~ia~~G-~~~l~p~~~-~a~~aq~Ga~lav~lktK 350 (627)
T PRK09824 296 GAF-------WQVFVIFGLHWGLVPLMINNLTVLG-HDTMLPLLM-PAVMAQVGAALGVFLCTR 350 (627)
T ss_pred HHH-------HHHHHHhccchhhHHHHHHHHHHhC-cchHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 433 12335688887765544432 2232 333445433 333445678888777755
No 85
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=54.55 E-value=2.7e+02 Score=28.92 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHh--c--cchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchH-HHHHHHHHHHHHHHHHHHHHH
Q 014688 118 VWVILGTIIGIY--K--PSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWT-VGIGFLAQYLIKPMLGFVIAM 192 (420)
Q Consensus 118 l~ii~gv~lgl~--~--P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~-l~~~l~~~~vl~Plla~~l~~ 192 (420)
++.+.+.+++-+ + |.... +......+.+-++++.+-++.|.+++.+.-++.-. ...+.+...+..++ ++.+..
T Consensus 30 l~~~~~~~lsnlgli~~p~~s~-~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~v-a~~l~~ 107 (378)
T PF05684_consen 30 LCYLLGMLLSNLGLIDSPASSP-VYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVV-AFLLFG 107 (378)
T ss_pred HHHHHHHHHHHCCCcCCCCcch-HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 344455555544 4 54432 22244555666666666678888887765432211 11232233333333 333332
Q ss_pred HhCCchhhhhhhhhcccCchh-hHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014688 193 TLKLSAPLATGLILVSCCPGG-QASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKL 251 (420)
Q Consensus 193 ~~~l~~~la~GliLla~~P~~-~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~l 251 (420)
....++.....-.+.+.-=|| ..-..+.+..+-+.++-..+.+..++..-+.+.+++.+
T Consensus 108 ~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 108 GFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred hcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221233344444444443333 33335678888888888888999999998887777654
No 86
>COG2431 Predicted membrane protein [Function unknown]
Probab=54.41 E-value=2.4e+02 Score=28.28 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCC--hHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 014688 116 FPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLT--FEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI 190 (420)
Q Consensus 116 ~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~--~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l 190 (420)
+...+++|.++|+..-+...+.. ....+.+.++.|..|.++. -...++..-|+|.+...+. +++--+++-.+
T Consensus 109 ~~~~vl~g~~~G~l~~~~~~~~~-~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i--~ilssliGG~i 182 (297)
T COG2431 109 LLGVVLLGLALGLLTGSFLNFPE-NASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFI--TLLSSLIGGLI 182 (297)
T ss_pred HHHHHHHHHHHHHHhcccccCch-hHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHH--HHHHHHHHHHH
Confidence 56777888888888766655533 5778889999999999988 3334455555665555432 23344444443
No 87
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=52.77 E-value=2.2e+02 Score=32.82 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=57.7
Q ss_pred HHHHHHhccch--hhh----hhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHH---HHHHHHHHHHHHHHHHHHHHH
Q 014688 123 GTIIGIYKPSA--VTW----LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTV---GIGFLAQYLIKPMLGFVIAMT 193 (420)
Q Consensus 123 gv~lgl~~P~~--~~~----l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l---~~~l~~~~vl~Plla~~l~~~ 193 (420)
+.++|+..|+. ... ++.....+.+.+-+..+|+++++..+. ++..+ ....+.-++..-+.+++.++.
T Consensus 299 AFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~----~~~~~~~~~~liv~a~~gK~~g~~l~a~~ 374 (832)
T PLN03159 299 AFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ----GPATWGLLVLVIIMASAGKIMGTIIIAFF 374 (832)
T ss_pred HHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc----CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667752 122 221123455666667889999987663 22211 111122333444456666667
Q ss_pred hCCchh--hhhhhhhcccCchhhHHHHH--HHHcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 194 LKLSAP--LATGLILVSCCPGGQASNVA--TYISKGNV--ALSVLMTTCSTIGAIVMTPLLTKLL 252 (420)
Q Consensus 194 ~~l~~~--la~GliLla~~P~~~~s~v~--t~lagGn~--~Lav~~t~istlla~~~~Pl~l~ll 252 (420)
++.+.. +++|+++. += |....+. .....|-. +.-..++....+.+.++.|++..++
T Consensus 375 ~g~~~~eal~lG~lm~--~k-G~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 375 YTMPFREGITLGFLMN--TK-GLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred hCCCHHHHHHHHHHHh--cc-cHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 776554 44454442 22 2333222 12222222 2222233334455666777766544
No 88
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=51.78 E-value=2e+02 Score=26.54 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccChHHHHHHHH--HHHHHHHHHHHHHHHHhHHHH
Q 014688 226 NVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTF--QVVLVPTVVGVLANEFFPKFT 290 (420)
Q Consensus 226 n~~Lav~~t~istlla~~~~Pl~l~ll~G~~v~id~~~l~~~ll--~~VllPlllG~llr~~~p~~~ 290 (420)
|.........++.+++.++.|++...+..++ .-...+..++. ...+.-+.++..+.|..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~--~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~ 68 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYLGPEE--YGIYSLALSIVSLLSILADLGLSQAIVRFIAEYK 68 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 4455667778888999999999998774221 11222233222 223334455555555555433
No 89
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=47.94 E-value=3.8e+02 Score=28.75 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHH-HHHHHHHHhCCchhhhhhhhhcccCch
Q 014688 180 YLIKPM-LGFVIAMTLKLSAPLATGLILVSCCPG 212 (420)
Q Consensus 180 ~vl~Pl-la~~l~~~~~l~~~la~GliLla~~P~ 212 (420)
|-.+|+ ++|-.++-|+-+|.++..+-..-+.|.
T Consensus 168 FyFLPi~va~sAaK~f~~np~lg~~ig~~L~~P~ 201 (473)
T PRK11007 168 FFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQ 201 (473)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcc
Confidence 445676 578888888888877665555555664
No 90
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=47.54 E-value=2.8e+02 Score=27.13 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhHHH
Q 014688 276 TVVGVLANEFFPKFTSKIISVTPLIG 301 (420)
Q Consensus 276 lllG~llr~~~p~~~~ri~~~~~~is 301 (420)
.++-+++|++.|+..+.+....+++.
T Consensus 105 q~vem~L~a~~p~Ly~aLGifLPLIt 130 (244)
T PRK01061 105 QILELLLEKVSRNLYLSLGIFLPLIA 130 (244)
T ss_pred HHHHHHHHHHhHHHHHHHhcchhHHH
Confidence 35667888888988888877777663
No 91
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=45.97 E-value=1.4e+02 Score=29.52 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=20.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 014688 380 NPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDD 414 (420)
Q Consensus 380 ~pl~avP~~v~~~~q~l~gs~la~~wr~~~~~~~~ 414 (420)
-|....|.++....-.+..++++ ++||++.+.++
T Consensus 82 ~~i~~~~i~~~l~~~t~~~~~~a-~~rr~~~~~~~ 115 (287)
T PF07760_consen 82 WGIRLIPILISLSIFTLVLSIIA-YIRRRRLPEEE 115 (287)
T ss_pred CCcchhHHHHHHHHHHHHHHHHH-HHhcccCCccc
Confidence 46777787776665656666665 55555544443
No 92
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=45.78 E-value=2.7e+02 Score=26.40 Aligned_cols=25 Identities=16% Similarity=0.514 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhHH
Q 014688 276 TVVGVLANEFFPKFTSKIISVTPLI 300 (420)
Q Consensus 276 lllG~llr~~~p~~~~ri~~~~~~i 300 (420)
.++-+++|++.|+..+.+....+++
T Consensus 93 ~~ve~~l~a~~p~Ly~~LGiflpLI 117 (199)
T PRK12456 93 QILEMVLERFLPSLHHTLGAFLPLL 117 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 3566778888888888887777766
No 93
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=45.71 E-value=1.8e+02 Score=29.47 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=58.4
Q ss_pred HHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChH
Q 014688 149 LMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA 228 (420)
Q Consensus 149 ~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~ 228 (420)
++++.|.-.|+.- .+.|||.++++-..|+.++ .++..+..++.++..+..+-+.+.+=+.++-++-+.++. |.-
T Consensus 90 IFmGvGAmTDFgp---llanPktllLGaAAQ~GIF--~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~LAP-~Ll 163 (375)
T COG1883 90 IFMGVGAMTDFGP---LLANPKTLLLGAAAQFGIF--ATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKLAP-ELL 163 (375)
T ss_pred HHhccchhcccch---hhcCcHHHHhhhHHHhchH--HHHHHHHHhCCCHhhhhheeeeccCCCCceEEeccccCH-HHH
Confidence 3446666555554 4689999999999998774 455566667777777777777777655544444333322 221
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhc
Q 014688 229 LSVLMTTCS-TIGAIVMTPLLTKLLA 253 (420)
Q Consensus 229 Lav~~t~is-tlla~~~~Pl~l~ll~ 253 (420)
-++....-| ..+-++.=|..++.+.
T Consensus 164 ~~iAvAAYSYMALVPiIQPpimkaLT 189 (375)
T COG1883 164 GAIAVAAYSYMALVPIIQPPIMKALT 189 (375)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHhc
Confidence 122222222 2344556677777775
No 94
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=45.07 E-value=2.8e+02 Score=26.36 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 014688 229 LSVLMTTCSTIGAIVMTPLLTKLLAG--------QLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLI 300 (420)
Q Consensus 229 Lav~~t~istlla~~~~Pl~l~ll~G--------~~v~id~~~l~~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~i 300 (420)
..++.+.+.++.+.+.-++.-.++.. ...++++..+..-+..+=.+=..+-+++|++.|+..+.+....|++
T Consensus 41 mGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI 120 (202)
T PRK02830 41 LGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLPLI 120 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 44455555555555555554444321 1123333333222222222223567788999999888888877776
Q ss_pred H
Q 014688 301 G 301 (420)
Q Consensus 301 s 301 (420)
.
T Consensus 121 ~ 121 (202)
T PRK02830 121 T 121 (202)
T ss_pred H
Confidence 3
No 95
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=44.89 E-value=2.3e+02 Score=27.51 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc-CCCccCcceehhhhhhchHHHHHHHHHHhcCCcc-hHHHHHH
Q 014688 312 PIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQSSALGFLLAQKHFTNPL-VAVPSAV 389 (420)
Q Consensus 312 ~~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~-~l~~~~~~tlsi~~G~rNs~Lal~lA~~~F~~pl-~avP~~v 389 (420)
...++.+.++.....++..+++=...+...+++++|. +++++-.+++ .-=.-.++.|+-++...-+.|. .++-+++
T Consensus 78 PLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl--~PkSvTTpiAm~vs~~iGGip~ltav~Vi~ 155 (230)
T COG1346 78 PLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSL--LPKSVTTPIAMEVSESIGGIPALTAVFVIL 155 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh--cccccccHHHHHHHHhcCCchHHHHHHHHH
Confidence 3445566666555556666666667788889999998 5555433322 2222223677777766544443 4555555
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014688 390 SVVCMALGGSALAVFWR 406 (420)
Q Consensus 390 ~~~~q~l~gs~la~~wr 406 (420)
-.+.-++.|..+-.+.|
T Consensus 156 tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 156 TGILGAVLGPLLLKLLR 172 (230)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56655666665544443
No 96
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=44.82 E-value=1.5e+02 Score=26.64 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=51.1
Q ss_pred CcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcC-------------
Q 014688 102 MSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN------------- 168 (420)
Q Consensus 102 ~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~------------- 168 (420)
|+.++.+++|+.+.=-+=++.|+++|-.+-.....+....+.+.+..+. -+.+++++.-.++.
T Consensus 1 m~mlkeFK~Fi~rGNViDLAVgVIIG~AF~~IV~SlV~diImPlIg~l~----g~~~~~~~~~~l~~~~~~~~~~~~~~~ 76 (142)
T PRK13952 1 MSMLKEFKEFALKGNVMDLAVGVIIGGAFGKIVDSLVNDLIMPIIGLIT----GGLDFSNYFIQLGGAPAGNPTTLAAAK 76 (142)
T ss_pred CcHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCccchhheeeeccCcccchhhHHHHh
Confidence 4578899999865555555666666666655544443356667776553 12243432111110
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 169 -------PWTVGIGFLAQYLIKPMLGFVIAMTL 194 (420)
Q Consensus 169 -------p~~l~~~l~~~~vl~Plla~~l~~~~ 194 (420)
....++.-+++|+++-+..|.+.+..
T Consensus 77 ~a~~~~i~yG~fl~avInFlIiA~vvf~ivk~~ 109 (142)
T PRK13952 77 KAGVAVFAYGNFITVLINFLILAFIIFLMVKAI 109 (142)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344555678888888877776554
No 97
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=43.89 E-value=2.2e+02 Score=32.75 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=52.8
Q ss_pred HHHHHHHHHhccCCChHHHHH--H-hcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHH
Q 014688 144 IGLGFLMLSMGLTLTFEDFRR--C-LRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVAT 220 (420)
Q Consensus 144 ~~L~l~mf~~Gl~l~~~~l~~--~-l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t 220 (420)
.+-.++++..|+.+...++.. . ...|+.+++++++.|+.-|..++++..+.+......--+++--.-|=|..|..+.
T Consensus 299 LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl 378 (810)
T TIGR00844 299 LLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAA 378 (810)
T ss_pred HHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHH
Confidence 445566677888888877642 1 1235677788888888898888876554443334555666666677777777665
Q ss_pred HHcC
Q 014688 221 YISK 224 (420)
Q Consensus 221 ~lag 224 (420)
.++.
T Consensus 379 ~~A~ 382 (810)
T TIGR00844 379 ILSK 382 (810)
T ss_pred HHHH
Confidence 5553
No 98
>PRK10711 hypothetical protein; Provisional
Probab=42.44 E-value=3.3e+02 Score=26.43 Aligned_cols=86 Identities=14% Similarity=0.023 Sum_probs=50.5
Q ss_pred HHhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc-CCCccCcceehhhhhhchH--HHHHHHHHHhcCCc-chHHHH
Q 014688 312 PIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQSS--ALGFLLAQKHFTNP-LVAVPS 387 (420)
Q Consensus 312 ~~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~-~l~~~~~~tlsi~~G~rNs--~Lal~lA~~~F~~p-l~avP~ 387 (420)
...++.+.++.....++...++=..++...+++++|. +++++ ...+ ..-|.. ++|+.++...-+.| +.++-+
T Consensus 76 PLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~~~S--l~pkSVTtPIAm~is~~iGG~~sLta~~V 151 (231)
T PRK10711 76 PLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE--IAAS--ILPKSVTTPIAMAVGGSIGGIPAISAVCV 151 (231)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHHH--HhhhhhhHHHHHHHHHHhCCcHHHHHHHH
Confidence 3455666666666666666666667788888888888 55544 3332 334444 67777776654443 344445
Q ss_pred HHHHHHHHHHHHHH
Q 014688 388 AVSVVCMALGGSAL 401 (420)
Q Consensus 388 ~v~~~~q~l~gs~l 401 (420)
++..+.-.+.|..+
T Consensus 152 iitGi~Ga~~g~~l 165 (231)
T PRK10711 152 IFVGILGAVFGHTL 165 (231)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555544554444
No 99
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=39.90 E-value=1.7e+02 Score=29.71 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHH
Q 014688 175 GFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVL 232 (420)
Q Consensus 175 ~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~ 232 (420)
..++.+++.-.++|.+++.++++.+....+.+....=-...+..++...=+|.++++.
T Consensus 251 ~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~ 308 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAAL 308 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHH
Confidence 3445666778889999999999888888877777765554444443333333344333
No 100
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.34 E-value=4.3e+02 Score=26.61 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhCCchh-hhhhhhhcccCchhhHHHHH-----------HHHcCCC---hHHHHHHHHHHHHHHHHH
Q 014688 180 YLIKPMLGFVIAMTLKLSAP-LATGLILVSCCPGGQASNVA-----------TYISKGN---VALSVLMTTCSTIGAIVM 244 (420)
Q Consensus 180 ~vl~Plla~~l~~~~~l~~~-la~GliLla~~P~~~~s~v~-----------t~lagGn---~~Lav~~t~istlla~~~ 244 (420)
++++=+.+|+..++|.-... +-+|.++-..+ +.|+| ..+..|+ .+.+-..-.-|.-=..++
T Consensus 157 ~v~~~~~a~~~~q~FSgRaa~i~vGa~lgTiM----~~NV~fvI~P~Qkkvv~~~~ag~~~dp~~g~~aklrS~hN~ylT 232 (300)
T PF06181_consen 157 FVLLVVAAWGLTQVFSGRAAFIHVGAWLGTIM----AANVFFVIWPNQKKVVAAVKAGEEPDPAAGKRAKLRSRHNNYLT 232 (300)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH----HHhHheeecCCcHHHHhhhhcCCCCCchhHHHHHHHhhhcceeH
Confidence 45666788999988754332 33333332221 22222 2333343 444444444455555688
Q ss_pred HHHHHHHhcCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014688 245 TPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKF 289 (420)
Q Consensus 245 ~Pl~l~ll~G~~v~id~~~l~~~ll~~VllPlllG~llr~~~p~~ 289 (420)
+|+++.+..+. -+.-+..-.--+ ++.+=++.|..+|+++-..
T Consensus 233 lPvLf~MiSnH-yp~~y~~~~nWl--il~li~~~g~~IRhfFn~r 274 (300)
T PF06181_consen 233 LPVLFLMISNH-YPMTYGHPYNWL--ILALIMLAGALIRHFFNLR 274 (300)
T ss_pred HHHHHHHHhcc-CccccccchhHH--HHHHHHHHHHHHHHHHHHh
Confidence 99988876542 222111110011 2233347899999998643
No 101
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=37.64 E-value=4.9e+02 Score=27.02 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhccchhhhhh--HhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 117 PVWVILGTIIGIYKPSAVTWLE--TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL 194 (420)
Q Consensus 117 ~l~ii~gv~lgl~~P~~~~~l~--~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~ 194 (420)
++.++..+.+...+|.....++ +.+-...+-+.+-.+|.+.+.+++.+ .|..+.+++ +...+-=++.+++++++
T Consensus 242 ~il~~tt~~l~~~~~~~~~~l~g~~~lg~~lly~ffa~IGa~a~i~~l~~---ap~~~l~~~-i~l~iH~~l~l~~~kl~ 317 (378)
T PF05684_consen 242 LILTVTTLGLATSFPPFRKLLRGASELGTFLLYLFFAVIGASADISELLD---APSLFLFGF-IILAIHLLLMLILGKLF 317 (378)
T ss_pred HHHHHHHHHHHHhccchhhcCCchHHHHHHHHHHHHHHHccccCHHHHHH---hHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3334445556666777665532 23555666666668999998888765 566555543 34555666778889999
Q ss_pred CCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 014688 195 KLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAI 242 (420)
Q Consensus 195 ~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~ 242 (420)
+.|-+. ..+--.++.-|.+..++++. ++| .++..-.+.+.++.-.
T Consensus 318 k~~l~~-~~vAS~AnIGGpaTA~a~A~-a~~-~~Lv~pgvL~gvlGya 362 (378)
T PF05684_consen 318 KIDLFE-LLVASNANIGGPATAPAVAA-AKG-PSLVPPGVLMGVLGYA 362 (378)
T ss_pred CCCHHH-HHHHhhcccCCcchHHHHHH-hcC-CccHHHHHHHHHHHHH
Confidence 876532 22333444434444445544 444 5555555544444433
No 102
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=36.73 E-value=4e+02 Score=25.76 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=45.5
Q ss_pred HhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc-CCCccCcceehhhhhhchH--HHHHHHHHHhcCCc-chHHHHH
Q 014688 313 IGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQSS--ALGFLLAQKHFTNP-LVAVPSA 388 (420)
Q Consensus 313 ~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~-~l~~~~~~tlsi~~G~rNs--~Lal~lA~~~F~~p-l~avP~~ 388 (420)
..++.+.++.....++....+=..++...++++++. +++++ ... +..-|+. ++|+.++...-++| +.++-++
T Consensus 76 LY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vv 151 (226)
T TIGR00659 76 LYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE--IIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVI 151 (226)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHH
Confidence 344555555544445544444445666777788877 55433 333 3444555 67777777665444 3344445
Q ss_pred HHHHHHHHHHHHH
Q 014688 389 VSVVCMALGGSAL 401 (420)
Q Consensus 389 v~~~~q~l~gs~l 401 (420)
+..+.-.+.|..+
T Consensus 152 itGi~Ga~~g~~l 164 (226)
T TIGR00659 152 LTGLLGTVFGPMV 164 (226)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444444444
No 103
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=36.52 E-value=5e+02 Score=26.79 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhc-CCCccCcc---eehhhhhhchH-HHHHHHHHH-hcCC-cchHHHHH-HHHHHHHHHHHHHHHH
Q 014688 333 LLHAAAFALGYWLSKI-SFGESTSR---TISIECGMQSS-ALGFLLAQK-HFTN-PLVAVPSA-VSVVCMALGGSALAVF 404 (420)
Q Consensus 333 ll~~~~f~lG~ll~r~-~l~~~~~~---tlsi~~G~rNs-~Lal~lA~~-~F~~-pl~avP~~-v~~~~q~l~gs~la~~ 404 (420)
.+......+|..+++. +.++.-.. +++++-|--.. +.|-.+... -+++ ..+++..+ +..+.-.++|..++.+
T Consensus 102 ~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~ 181 (368)
T PF03616_consen 102 ILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANW 181 (368)
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677666665 44433211 23444443333 333333333 2222 23344444 3444456778888877
Q ss_pred HhcCCC
Q 014688 405 WRNQPI 410 (420)
Q Consensus 405 wr~~~~ 410 (420)
.-||..
T Consensus 182 lirk~~ 187 (368)
T PF03616_consen 182 LIRKGK 187 (368)
T ss_pred HHHcCC
Confidence 655554
No 104
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=35.99 E-value=1.3e+02 Score=23.24 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 014688 262 AGLAISTFQVVLVPTVVGVLANEFFPKFTSKIIS 295 (420)
Q Consensus 262 ~~l~~~ll~~VllPlllG~llr~~~p~~~~ri~~ 295 (420)
.++..-+.+..++=+-+|+++++++|++-+.+..
T Consensus 4 ~DiiQii~l~AlI~~pLGyl~~~~~~r~~~~lr~ 37 (62)
T PF11120_consen 4 SDIIQIIILCALIFFPLGYLARRWLPRIRRTLRR 37 (62)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 3444444445555567899999999987665544
No 105
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=34.39 E-value=5.8e+02 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHhccchhhhhh
Q 014688 112 LTTLFPVWVILGTIIGIYKPSAVTWLE 138 (420)
Q Consensus 112 l~~~~~l~ii~gv~lgl~~P~~~~~l~ 138 (420)
+.......+++|+++|+++|+...|++
T Consensus 9 l~~~iligl~lGi~~G~~~~~~~~~l~ 35 (428)
T PRK01663 9 LYFQVLVAIIIGILLGHFYPELGAQMK 35 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577888899999999987665543
No 106
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.54 E-value=1.2e+02 Score=32.52 Aligned_cols=129 Identities=19% Similarity=0.304 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hCCchhhhhhhhhccc---CchhhHHHHHHHHcCCChHHHHHHHHHHHHH
Q 014688 171 TVGIGFLAQYLIKPMLGFVIAMT-------LKLSAPLATGLILVSC---CPGGQASNVATYISKGNVALSVLMTTCSTIG 240 (420)
Q Consensus 171 ~l~~~l~~~~vl~Plla~~l~~~-------~~l~~~la~GliLla~---~P~~~~s~v~t~lagGn~~Lav~~t~istll 240 (420)
.....++...+..-...|+..|+ ++.++++ .|+-++++ .|=-..|.+.++.-=||++.+-+ +-|++.
T Consensus 424 fF~vTFigSIlWIA~fSYLMVWwa~~iGeT~gIp~eI-MGLTiLAAGTSIPDlitSvIVARKGlGDMAVSsS--iGSNiF 500 (588)
T KOG1307|consen 424 FFPVTFIGSILWIAAFSYLMVWWANIIGETLGIPDEI-MGLTILAAGTSIPDLITSVIVARKGLGDMAVSSS--IGSNIF 500 (588)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHcccccCCCHHH-hhhhhhhcCCchHHhhHhhhhcccccccceeecc--cccchh
Confidence 33444444445555666666555 3455544 45555444 46667888889999999876543 334444
Q ss_pred HHH---HHHHHHHHhcCCc---cccChHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHH
Q 014688 241 AIV---MTPLLTKLLAGQL---VPVDAAGLA--ISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLL 308 (420)
Q Consensus 241 a~~---~~Pl~l~ll~G~~---v~id~~~l~--~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill 308 (420)
-+. =+|-+++.+.+.. ++++--+++ .-+++..++=++.|..+++| |..|.+.....+++.++
T Consensus 501 DI~VGLplPWLL~~lI~~~~~~i~vsS~GL~csi~lLf~ml~v~v~~ia~~rW------rMnK~lG~~m~llY~~F 570 (588)
T KOG1307|consen 501 DILVGLPLPWLLYTLIYGFKSKISVSSNGLVCSIGLLFAMLIVLVLGIALSRW------RMNKILGFLMILLYFVF 570 (588)
T ss_pred heeecCCcHHHHHHHHhhcCCceeecCCceehHHHHHHHHHHHHHHHHHHHhh------hcccchhHHHHHHHHHH
Confidence 333 3677777665432 455543333 23445566667888888887 34444444444444433
No 107
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=33.05 E-value=4.4e+02 Score=25.19 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=46.1
Q ss_pred HhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc-CCCccCcceehhhhhhchH--HHHHHHHHHhcCCcc-hHHHHH
Q 014688 313 IGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQSS--ALGFLLAQKHFTNPL-VAVPSA 388 (420)
Q Consensus 313 ~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~-~l~~~~~~tlsi~~G~rNs--~Lal~lA~~~F~~pl-~avP~~ 388 (420)
..++.+.++.....++.....=..++...++++++. +.+++ ... ...-|+. ++|+.++...-++|. .++-++
T Consensus 66 LY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~--Sl~pkSVTtpiAi~is~~iGG~~sLta~~Vv 141 (215)
T PF04172_consen 66 LYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IIL--SLAPKSVTTPIAIEISEQIGGIPSLTAVFVV 141 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HHHHHHhhHHHHHHHHHHhCChHHHHHHHHH
Confidence 344555555554445555555555666777777877 55544 333 3444555 667777766655443 344444
Q ss_pred HHHHHHHHHHHHH
Q 014688 389 VSVVCMALGGSAL 401 (420)
Q Consensus 389 v~~~~q~l~gs~l 401 (420)
+..+.-.+.|..+
T Consensus 142 itGi~Ga~~g~~l 154 (215)
T PF04172_consen 142 ITGILGAVLGPPL 154 (215)
T ss_pred HHhhHHHHhHHHH
Confidence 4555444555444
No 108
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=31.87 E-value=4.5e+02 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhHHH
Q 014688 277 VVGVLANEFFPKFTSKIISVTPLIG 301 (420)
Q Consensus 277 llG~llr~~~p~~~~ri~~~~~~is 301 (420)
.+-+++|++.|+..+.+....+++.
T Consensus 96 ~vem~l~a~~p~ly~~LGiflpLI~ 120 (200)
T TIGR01940 96 ILEMVLERFSPSLYNALGIFLPLIT 120 (200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 4667888888988888877777663
No 109
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=31.06 E-value=5e+02 Score=25.20 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=48.8
Q ss_pred HHhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc-CCCccCcceehhhhhhchH--HHHHHHHHHhcCCc-chHHHH
Q 014688 312 PIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQSS--ALGFLLAQKHFTNP-LVAVPS 387 (420)
Q Consensus 312 ~~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll~r~-~l~~~~~~tlsi~~G~rNs--~Lal~lA~~~F~~p-l~avP~ 387 (420)
...++.+.++.....++...++=..++...+++++|. +.+++ .. .+..-|+. ++|+.++...-+.| +.++-+
T Consensus 81 PLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~~--~Sl~pKSVTtPIAm~is~~iGG~psLtA~~V 156 (232)
T PRK04288 81 PLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--VM--ASMLPQAATTAIALPVSAGIGGIKEITSFAV 156 (232)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhHhhhHHHHHHHHHHhCCcHHHHHHHH
Confidence 3445556666555556666555566677778888887 55543 22 33444554 67777776665444 344445
Q ss_pred HHHHHHHHHHHHHH
Q 014688 388 AVSVVCMALGGSAL 401 (420)
Q Consensus 388 ~v~~~~q~l~gs~l 401 (420)
++..+.-.+.|..+
T Consensus 157 iitGi~Gai~g~~l 170 (232)
T PRK04288 157 IFNAVIIYALGAKF 170 (232)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444444
No 110
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=30.18 E-value=6.4e+02 Score=26.15 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHc
Q 014688 144 IGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYIS 223 (420)
Q Consensus 144 ~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~la 223 (420)
..+.+-+...|+++|.+.+.+.. .........-.+..=+..|..++.++.+...+.+.-... .+.+..+.+.....
T Consensus 277 ~fiplFFi~vG~~~dl~~l~~~~---~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~-~~~ge~~~v~~~~~ 352 (397)
T COG0475 277 LFIPLFFISVGMSLDLGVLLENL---LLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLL-RQGGEFAFVLAGIA 352 (397)
T ss_pred HHHHHHHHHhhHHcCHHHHhccH---HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhh-hhhhHHHHHHHHhc
Confidence 56666677899999998886543 222222222233333456666777775544444333332 33444555555555
Q ss_pred CC
Q 014688 224 KG 225 (420)
Q Consensus 224 gG 225 (420)
.|
T Consensus 353 ~~ 354 (397)
T COG0475 353 LG 354 (397)
T ss_pred cc
Confidence 55
No 111
>PRK05326 potassium/proton antiporter; Reviewed
Probab=29.16 E-value=5.6e+02 Score=27.77 Aligned_cols=106 Identities=11% Similarity=0.118 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHH
Q 014688 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYI 222 (420)
Q Consensus 143 ~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~l 222 (420)
.....++++..|+.+++.++.+.. +..+...++..++.-|+..+.....++.+.. -.+.+--+.|=|..+.+++..
T Consensus 277 ~l~~~~~Fv~lGl~~~~~~l~~~~--~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~--e~~~i~~~g~RG~v~i~lA~~ 352 (562)
T PRK05326 277 WLAQIGMFLVLGLLVTPSRLLDIA--LPALLLALFLILVARPLAVFLSLLPFRFNLR--EKLFISWVGLRGAVPIVLATF 352 (562)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccCCCCHh--hhheeeeecchhHHHHHHHHH
Confidence 344455666788888888775432 1223333334455556666665555543322 112211122333333333221
Q ss_pred ---cC---CCh--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014688 223 ---SK---GNV--ALSVLMTTCSTIGAIVMTPLLTKLL 252 (420)
Q Consensus 223 ---ag---Gn~--~Lav~~t~istlla~~~~Pl~l~ll 252 (420)
++ ++. ..+..++.+|+++...++|.+...+
T Consensus 353 ~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l 390 (562)
T PRK05326 353 PMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKL 390 (562)
T ss_pred HHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHc
Confidence 11 111 1223345566666666666655554
No 112
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=28.83 E-value=1.4e+02 Score=34.85 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHH-------hCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHH
Q 014688 167 RNPWTVGIGFLAQYLIKPMLGFVIAMT-------LKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTI 239 (420)
Q Consensus 167 ~~p~~l~~~l~~~~vl~Plla~~l~~~-------~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istl 239 (420)
+..|...++++...+..-+++|++.++ +++++....-.++....--.....-+..-.+|....++....-|++
T Consensus 929 ~~~k~y~ltFi~SIiwIsi~SyilV~~at~IG~vlGIse~VmGlTfLA~GTSIPDlisSvivArkG~gdMAVan~iGSNI 1008 (1096)
T TIGR00927 929 EARKFFVITFLGSIMWIAMFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNI 1008 (1096)
T ss_pred cccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhhhhhhhhhhcccHHHHHHHHHHHccCCcceeeeccccch
Q ss_pred HHHHH---HHHHHHHhc--CCccccChHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 014688 240 GAIVM---TPLLTKLLA--GQLVPVDAAGLAI--STFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASP 312 (420)
Q Consensus 240 la~~~---~Pl~l~ll~--G~~v~id~~~l~~--~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~ 312 (420)
.-+.+ +|.++..+. ...+.++-..++. .+++.+++=++.++.+++| ++.+....+.++++++++...
T Consensus 1009 FnIllgLGlPWlI~~li~g~~pV~V~S~GL~~sI~LLF~~LlflissI~l~kw------rL~R~lGivlLvlYvvFLV~a 1082 (1096)
T TIGR00927 1009 FDITVGLPVPWLLFSLINGLQPVPVSSNGLFCAIVLLFLMLLFVISSIASCKW------RMNKILGFTMFLLYFVFLIIS 1082 (1096)
T ss_pred heeeeeccHHHHHHHHhccCcceeecCccHHHHHHHHHHHHHHHHHHHHhcce------EEechHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhHH
Q 014688 313 IGQVSAVL 320 (420)
Q Consensus 313 ~a~~~~~l 320 (420)
+-...+.+
T Consensus 1083 iLiE~~ii 1090 (1096)
T TIGR00927 1083 VMLEDRII 1090 (1096)
T ss_pred HHHhcceE
No 113
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=27.98 E-value=5.8e+02 Score=27.01 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 014688 267 STFQVVLVPTVVGVLANEFFPKFTSKIISV 296 (420)
Q Consensus 267 ~ll~~VllPlllG~llr~~~p~~~~ri~~~ 296 (420)
+...++.+|.+.|-++|-.+.-..+|..+.
T Consensus 50 q~~ll~aiPil~GallRl~~g~l~drfGgR 79 (417)
T COG2223 50 QKGLLVAIPILVGALLRLPYGFLTDRFGGR 79 (417)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhcccCch
Confidence 455679999999999999887777887654
No 114
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=27.50 E-value=1.5e+02 Score=30.80 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhc-CCCccCcceehhhhhhchH---HHHHHHHHHh
Q 014688 331 VALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQSS---ALGFLLAQKH 377 (420)
Q Consensus 331 ~~ll~~~~f~lG~ll~r~-~l~~~~~~tlsi~~G~rNs---~Lal~lA~~~ 377 (420)
+.+-..++..+||++.+. |.+++.+.=+...|+.+|+ .++++-|..+
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~ 132 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCD 132 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhc
Confidence 345567789999999998 7666655444445666766 5666655543
No 115
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=27.42 E-value=1.8e+02 Score=25.83 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=48.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhc----------CchHHHH
Q 014688 105 YEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLR----------NPWTVGI 174 (420)
Q Consensus 105 ~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~----------~p~~l~~ 174 (420)
++.+++|+.+.=-+=++.|+++|-.+-.....+....+.+.+..++ | +.+++++.-.++ -.....+
T Consensus 2 l~~FK~Fi~rGNVidLAVaVIIG~AF~~iV~slV~diimPlI~~~~---g-~~~~~~~~~~~~~~~~~~~~~~i~yG~fl 77 (134)
T PRK00567 2 LKEFKEFAMRGNVVDLAVGVIIGAAFGKIVSSLVDDIIMPPIGLLI---G-GVDFSNLAIVLGEAQGDAPAVVINYGVFI 77 (134)
T ss_pred cHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---C-CccccceEEEeccccccccceeeeHHHHH
Confidence 4667788755444555566666666555444443356666666552 1 223333211111 1124455
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 014688 175 GFLAQYLIKPMLGFVIAMTL 194 (420)
Q Consensus 175 ~l~~~~vl~Plla~~l~~~~ 194 (420)
.-++||+++-+..|.+.+..
T Consensus 78 ~avI~FlIia~vvF~ivk~~ 97 (134)
T PRK00567 78 NAVIDFLIIAFAIFLLVKLI 97 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66789999888888877654
No 116
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=26.87 E-value=4.7e+02 Score=23.55 Aligned_cols=35 Identities=11% Similarity=-0.051 Sum_probs=18.8
Q ss_pred HHHHHHhhc--CCCccCcceehhhhhhchHHHHHHHHHH
Q 014688 340 ALGYWLSKI--SFGESTSRTISIECGMQSSALGFLLAQK 376 (420)
Q Consensus 340 ~lG~ll~r~--~l~~~~~~tlsi~~G~rNs~Lal~lA~~ 376 (420)
.+.++++++ |++. ..+....+|.+.+.-++.-+..
T Consensus 100 ~~~~~~~~~~~~~~~--~~~~G~~aGa~T~tpaL~aa~~ 136 (154)
T TIGR01625 100 LLVAVALIKLLRINY--ALTAGMLAGATTNTPALDAAND 136 (154)
T ss_pred HHHHHHHHHHhCCCH--HHHHHHHhccccChHHHHHHHH
Confidence 344444443 4443 4566667777776555555443
No 117
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=26.62 E-value=8.3e+02 Score=26.28 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhCCchhhh
Q 014688 182 IKPMLGFVIAMTLKLSAPLA 201 (420)
Q Consensus 182 l~Plla~~l~~~~~l~~~la 201 (420)
+.|+++...++-++..|.++
T Consensus 187 m~Pil~ayiA~si~~~p~la 206 (482)
T PRK11404 187 MIPIMGAYIASSIADKPAFA 206 (482)
T ss_pred HHHHHHHHHHHHHcCCcccc
Confidence 34998888888787777663
No 118
>TIGR00851 mtlA PTS system, mannitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities.The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIC domain of the mannitol PTS transporters.
Probab=26.58 E-value=7e+02 Score=25.43 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhh
Q 014688 272 VLVPTVVGVLANEFFPKFTSKIIS 295 (420)
Q Consensus 272 VllPlllG~llr~~~p~~~~ri~~ 295 (420)
-++|.++...+-.+.+|+.+|+.|
T Consensus 93 sViP~il~v~~~s~iEk~l~K~iP 116 (338)
T TIGR00851 93 AMIMGPLGGWLIKKTDEFVQGKVK 116 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCc
Confidence 567778888777777777776654
No 119
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=26.42 E-value=2.5e+02 Score=24.44 Aligned_cols=86 Identities=9% Similarity=0.089 Sum_probs=46.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHH
Q 014688 105 YEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKP 184 (420)
Q Consensus 105 ~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~P 184 (420)
++.+++|+.+.=-+-++.|+++|-.+-.....+....+.+.+...+ -| .++++......-.....+.-++||+++-
T Consensus 2 lkeFk~Fi~rGNVidLAVaVvIG~AF~~iV~slV~diimPlI~~~~--g~--~~~~~~~~~~~i~yG~fl~avinFlIiA 77 (119)
T PRK13954 2 LKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLVENIIMPLIGKIF--GS--VDFAKEWSFWGIKYGLFIQSVIDFIIIA 77 (119)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccc--CC--cccccchhhhhccHHHHHHHHHHHHHHH
Confidence 4567777755444555566666666544444333355566665442 12 2222211111112345556678899888
Q ss_pred HHHHHHHHHh
Q 014688 185 MLGFVIAMTL 194 (420)
Q Consensus 185 lla~~l~~~~ 194 (420)
+..|.+.+..
T Consensus 78 ~vvF~~vk~~ 87 (119)
T PRK13954 78 FALFIFVKIA 87 (119)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 120
>COG2985 Predicted permease [General function prediction only]
Probab=26.06 E-value=7.5e+02 Score=26.91 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccCCChHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHH---
Q 014688 144 IGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVA--- 219 (420)
Q Consensus 144 ~~L~l~mf~~Gl~l~~~~l~~~l~~-p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~--- 219 (420)
..+.+-.+.+|++--++=+....+. +|...++++. .+..-+++|.+.+++++|..+.+|+.-=+..-+..+...-
T Consensus 63 lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~~~L 141 (544)
T COG2985 63 LGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQDIL 141 (544)
T ss_pred hhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHHHHH
Confidence 4444445567777766655544444 3455555544 5555667888889999999999998855554443333322
Q ss_pred HHHcCC-----C----hHHHHHHHHHHHHHHHHHHHHHHH
Q 014688 220 TYISKG-----N----VALSVLMTTCSTIGAIVMTPLLTK 250 (420)
Q Consensus 220 t~lagG-----n----~~Lav~~t~istlla~~~~Pl~l~ 250 (420)
.....- + .+++--.-.++.++..-..|...+
T Consensus 142 ~~lg~~~~~~~~~~~gYamaYp~Gil~ii~~~~l~~~l~k 181 (544)
T COG2985 142 RELGAPSQALDQMGMGYALAYPIGILGIILGAWLLPKLFK 181 (544)
T ss_pred HhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 211111 1 122223335566666666676654
No 121
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=24.12 E-value=6.5e+02 Score=27.15 Aligned_cols=111 Identities=16% Similarity=0.055 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchh----hh---hhhhhcccCchhhHHHHHHHHcCC-ChHHHHHHHHHHH--HHHH
Q 014688 173 GIGFLAQYLIKPMLGFVIAMTLKLSAP----LA---TGLILVSCCPGGQASNVATYISKG-NVALSVLMTTCST--IGAI 242 (420)
Q Consensus 173 ~~~l~~~~vl~Plla~~l~~~~~l~~~----la---~GliLla~~P~~~~s~v~t~lagG-n~~Lav~~t~ist--lla~ 242 (420)
+.|..+|++++=++..+++.+-...+. +. +.+..++...+|=.|..+-...|| +......++...- ++-.
T Consensus 267 lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~ 346 (521)
T PF02990_consen 267 LVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFS 346 (521)
T ss_pred HhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHH
Confidence 446668988887766666554333332 33 333344445566566656556666 3333333222211 1111
Q ss_pred HHHHHHHH-HhcCCccccChHHHHH--HHHHHHHHHHH-HHHHHH
Q 014688 243 VMTPLLTK-LLAGQLVPVDAAGLAI--STFQVVLVPTV-VGVLAN 283 (420)
Q Consensus 243 ~~~Pl~l~-ll~G~~v~id~~~l~~--~ll~~VllPll-lG~llr 283 (420)
+...+.+. +..|..-.+++..++. .+...+-+|+. +|-.+-
T Consensus 347 ~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g 391 (521)
T PF02990_consen 347 IFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFG 391 (521)
T ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhh
Confidence 11122111 2235555667765544 34446667876 555554
No 122
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=23.89 E-value=3.9e+02 Score=23.44 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=47.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcC---chHHHHHHHHHHH
Q 014688 105 YEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN---PWTVGIGFLAQYL 181 (420)
Q Consensus 105 ~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~---p~~l~~~l~~~~v 181 (420)
++.+++|+.+.=-+=++.|+++|-.+-.....+....+.+.+..++ - +.+++++.-.... .....+.-++||+
T Consensus 2 ~~eFk~Fi~rGNVidLAVavIiG~AF~~iV~slV~dii~PlI~~~~--g--~~~~~~~~~~~~~~~i~yG~fl~avinFl 77 (125)
T PRK13953 2 LVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVNNIIMPLVGVLL--G--GLDFSDLSWKVGKSVIQYGAFIQSIVDFL 77 (125)
T ss_pred hHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--C--CccccchhhcccccceeHHHHHHHHHHHH
Confidence 5667788865444555566666666555444333356666665443 1 2233333221211 1244556677898
Q ss_pred HHHHHHHHHHHHh
Q 014688 182 IKPMLGFVIAMTL 194 (420)
Q Consensus 182 l~Plla~~l~~~~ 194 (420)
+.-+..|.+.+..
T Consensus 78 Iia~vvF~~vk~~ 90 (125)
T PRK13953 78 IIAFAIFIFVKVL 90 (125)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776554
No 123
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=23.78 E-value=1.3e+02 Score=18.25 Aligned_cols=15 Identities=40% Similarity=0.780 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 014688 271 VVLVPTVVGVLANEF 285 (420)
Q Consensus 271 ~VllPlllG~llr~~ 285 (420)
.++.|+++|..++-+
T Consensus 3 ~iIaPi~VGvvl~l~ 17 (21)
T PF13955_consen 3 TIIAPIVVGVVLTLF 17 (21)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHH
Confidence 578899999988753
No 124
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=23.25 E-value=9e+02 Score=25.54 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHhccchh--hhhh
Q 014688 112 LTTLFPVWVILGTIIGIYKPSAV--TWLE 138 (420)
Q Consensus 112 l~~~~~l~ii~gv~lgl~~P~~~--~~l~ 138 (420)
+.....+.+++|+++|+++|+.. .+++
T Consensus 8 l~~qv~iglilGi~~Gl~~~~~~~~~~l~ 36 (415)
T COG1301 8 LYLQVLIGLILGILVGLFLPELGAAIYLK 36 (415)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhh
Confidence 34556788999999999999876 5544
No 125
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.05 E-value=85 Score=24.78 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 014688 330 PVALLHAAAFALGYWLSKI 348 (420)
Q Consensus 330 ~~~ll~~~~f~lG~ll~r~ 348 (420)
..++-.++|++.||+++|+
T Consensus 9 ~ivl~ll~G~~~G~fiark 27 (71)
T COG3763 9 LIVLALLAGLIGGFFIARK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344456788899999997
No 126
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=22.33 E-value=6.9e+02 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=19.4
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhHHH
Q 014688 277 VVGVLANEFFPKFTSKIISVTPLIG 301 (420)
Q Consensus 277 llG~llr~~~p~~~~ri~~~~~~is 301 (420)
.+-+++|++.|+..+.+..+.+++.
T Consensus 85 ~ve~~l~a~~p~Ly~~LGiflpLIv 109 (209)
T PRK09292 85 VVDQVLKAYAYDISKQLSVFVGLII 109 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 5677889999998888877777653
No 127
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=21.46 E-value=3.8e+02 Score=23.72 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcC---chHHHHHHHHHHH
Q 014688 105 YEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN---PWTVGIGFLAQYL 181 (420)
Q Consensus 105 ~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~---p~~l~~~l~~~~v 181 (420)
++.+++|+.+.=-+=++.|+++|-.+-.....+....+.+.+..++ - ..+++++.-.... .....+.-+++|+
T Consensus 2 l~eFK~Fi~rGNVidLAVgVVIG~AF~~iV~slV~dii~PlI~~~~--g--~~~~~~~~~~~~~~~i~yG~fl~avInFl 77 (130)
T PRK13955 2 WNEFKKFAFKGNVIDLAVGVVIGAAFGKIVSSLVKDIITPLLGMVL--G--GVDFTDLKFTFGKSSIMYGNFIQTIFDFL 77 (130)
T ss_pred hHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--C--CCCcccceeecccceeeHHHHHHHHHHHH
Confidence 4667778755444455556666666555444333356666665542 1 2233333211111 1244556667888
Q ss_pred HHHHHHHHHHHHh
Q 014688 182 IKPMLGFVIAMTL 194 (420)
Q Consensus 182 l~Plla~~l~~~~ 194 (420)
++-+..|.+.+..
T Consensus 78 IiA~vvF~ivk~~ 90 (130)
T PRK13955 78 IIAASIFMFVKVF 90 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776554
No 128
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=21.36 E-value=9.6e+02 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=21.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhhhh
Q 014688 107 QIIEILTTLFPVWVILGTIIGIYKPSAVTWL 137 (420)
Q Consensus 107 r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l 137 (420)
|+...+.......+++|+++|.++|+...|+
T Consensus 3 ~~~~~l~~~i~igl~lGi~~G~~~~~~~~~l 33 (421)
T PRK13027 3 KFLRSLFGQVVIALVLGVALGAFFPHFAESL 33 (421)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445567778889999999888765443
No 129
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=21.10 E-value=8.7e+02 Score=26.99 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=16.9
Q ss_pred HHHHHH-HHHHHHHHhCCchhhhhhhhh
Q 014688 180 YLIKPM-LGFVIAMTLKLSAPLATGLIL 206 (420)
Q Consensus 180 ~vl~Pl-la~~l~~~~~l~~~la~GliL 206 (420)
|-.+|+ ++|-.++-|+.+|..++|.++
T Consensus 58 fyfLPi~ia~saak~f~~n~~~~i~~~l 85 (639)
T PRK15083 58 TYLLPLLIGYTGGKLVGGERGGVVGAIT 85 (639)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445676 477788888877744444433
No 130
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=20.43 E-value=8e+02 Score=23.88 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=14.1
Q ss_pred CChHHHHHHhcCchHHHHH
Q 014688 157 LTFEDFRRCLRNPWTVGIG 175 (420)
Q Consensus 157 l~~~~l~~~l~~p~~l~~~ 175 (420)
++++|-++.+|+.|...++
T Consensus 191 ~~~~~~r~~l~~~r~~~~g 209 (251)
T PRK04949 191 VSFKDMRAALRQKRGTSLQ 209 (251)
T ss_pred CCHHHHHHHHHHhhhHHHH
Confidence 8888988888877655443
No 131
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=20.24 E-value=2.8e+02 Score=24.76 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCcc
Q 014688 327 LIFPVALLHAAAFALGYWLSKI-SFGES 353 (420)
Q Consensus 327 ill~~~ll~~~~f~lG~ll~r~-~l~~~ 353 (420)
.+...+.....++..+|++.|. +.|..
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ 106 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPL 106 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444556667788889999988 55544
No 132
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=20.15 E-value=1.1e+03 Score=25.19 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=25.1
Q ss_pred hhhhhchHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014688 360 IECGMQSSALGFLLAQK-HFTNPLVAVPSAVSVVCMALGGSALAVFWRNQ 408 (420)
Q Consensus 360 i~~G~rNs~Lal~lA~~-~F~~pl~avP~~v~~~~q~l~gs~la~~wr~~ 408 (420)
.-+|+.+.-..+.+... .++ .....|... .-.....|+.++.+.|.|
T Consensus 317 V~~GlH~~l~~i~~~~~a~~G-~~~~~~~~~-~~~~aq~ga~lav~lk~k 364 (462)
T TIGR01992 317 VITGLHHMFLAVDLQLIGSLG-GTFLWPMIA-LSNIAQGSAALGIIFMSR 364 (462)
T ss_pred HHhccchhhHHHHHHHHHHhC-cchHHHHHH-HHHHHHHHHHHHHHHHHC
Confidence 45788877655544432 332 334445432 223335677777766655
Done!