Query 014688
Match_columns 420
No_of_seqs 218 out of 1637
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 3.5E-53 1.2E-57 424.1 32.7 314 100-414 4-319 (332)
2 2oar_A Large-conductance mecha 48.2 27 0.00092 31.1 5.5 89 100-193 20-116 (174)
3 3zux_A Transporter, ASBTNM; tr 44.8 1.9E+02 0.0064 27.8 11.7 29 175-203 233-261 (332)
4 2ks1_B Epidermal growth factor 36.2 56 0.0019 22.4 4.4 29 383-411 13-41 (44)
5 2l2t_A Receptor tyrosine-prote 35.5 63 0.0022 22.2 4.6 22 391-412 20-41 (44)
6 2kv5_A FST, putative uncharact 23.5 60 0.002 20.9 2.6 18 268-285 4-21 (33)
7 2jwa_A Receptor tyrosine-prote 14.2 2E+02 0.0067 19.7 3.6 22 390-411 20-41 (44)
8 1zcd_A Na(+)/H(+) antiporter 1 13.1 7.4E+02 0.025 24.4 9.2 50 140-189 62-113 (388)
9 3hzq_A Large-conductance mecha 11.4 38 0.0013 28.0 -0.8 89 101-194 18-107 (114)
10 3gia_A Uncharacterized protein 8.2 7.3E+02 0.025 23.6 7.2 6 298-303 320-325 (444)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=3.5e-53 Score=424.09 Aligned_cols=314 Identities=33% Similarity=0.596 Sum_probs=290.2
Q ss_pred CCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHH
Q 014688 100 GGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQ 179 (420)
Q Consensus 100 ~~~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~ 179 (420)
++|+.++|+.+|+.+++++|+++++++|.++|+.+.+++ ..+++.++++||.+|++++.+|+++.++|||.+..++++|
T Consensus 4 ~~m~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~-~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~ 82 (332)
T 3zux_A 4 ASMNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG-PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQ 82 (332)
T ss_dssp ---CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGG-GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHH
Confidence 468999999999999999999999999999999999987 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 014688 180 YLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPV 259 (420)
Q Consensus 180 ~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G~~v~i 259 (420)
++++|+++|+++++++++++++.|+++++||||+.+|++||+++|||+++++.++.+||+++++++|+++.++.|+.+++
T Consensus 83 ~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v 162 (332)
T 3zux_A 83 FAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEI 162 (332)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHHHHH
Q 014688 260 DAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAF 339 (420)
Q Consensus 260 d~~~l~~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~~~f 339 (420)
|+.+++.+++.++++|+++|+++|+++|++.+|+++..+.++...+++++...++.+.+.+.+.+..++..+++++.++|
T Consensus 163 ~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 242 (332)
T 3zux_A 163 QAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGY 242 (332)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888877776666666677777777777788888889999999
Q ss_pred HHHHHHhhc-CCCccCcceehhhhhhchHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 014688 340 ALGYWLSKI-SFGESTSRTISIECGMQSSALGFLLAQKHFT-NPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDD 414 (420)
Q Consensus 340 ~lG~ll~r~-~l~~~~~~tlsi~~G~rNs~Lal~lA~~~F~-~pl~avP~~v~~~~q~l~gs~la~~wr~~~~~~~~ 414 (420)
.+||+++|+ |+++++++|+++|+|+||+++|+++|..+|+ +|.+++|.++|+++|++.|++++.+|+|++.+.++
T Consensus 243 ~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~~~~~ 319 (332)
T 3zux_A 243 LLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKK 319 (332)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCccccCC
Confidence 999999999 9999999999999999999999999999996 68999999999999999999999999998755443
No 2
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=48.16 E-value=27 Score=31.06 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=50.9
Q ss_pred CCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhc---C----chHH
Q 014688 100 GGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLR---N----PWTV 172 (420)
Q Consensus 100 ~~~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~---~----p~~l 172 (420)
..+++++.+++|+.+.=-+=+++|+++|-.+-.....+...++.+.+. + + | +.+++++.-.++ . ....
T Consensus 20 ~~~~mlkeFKeFi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIg-l-~--G-g~dfs~l~~~l~~~~~~~~i~yG~ 94 (174)
T 2oar_A 20 DDKHMLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLIN-R-I--G-VNAQSDVGILRIGIGGGQTIDLNV 94 (174)
T ss_dssp ----CHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-H--C-CCCEEECCCCTTTCCSCEEECHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-h-h--C-CCCcccceEEEecCCCceeeeHHH
Confidence 347899999999965555555666666666655544444467777777 2 2 2 345555432221 0 2345
Q ss_pred HHHHHHHHHHHHHHH-HHHHHH
Q 014688 173 GIGFLAQYLIKPMLG-FVIAMT 193 (420)
Q Consensus 173 ~~~l~~~~vl~Plla-~~l~~~ 193 (420)
++.-++||+++-+.. |++.+.
T Consensus 95 Fi~avInFlIIA~vIYFliVk~ 116 (174)
T 2oar_A 95 LLSAAINFFLIAFAVYFLVVLP 116 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 566678898888777 444443
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=44.81 E-value=1.9e+02 Score=27.82 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhhhh
Q 014688 175 GFLAQYLIKPMLGFVIAMTLKLSAPLATG 203 (420)
Q Consensus 175 ~l~~~~vl~Plla~~l~~~~~l~~~la~G 203 (420)
..+..+.+.-.++|.+++.++.+.+....
T Consensus 233 ~~~l~~~~~~~lg~~~~r~~~~~~~~~~t 261 (332)
T 3zux_A 233 VVVLHNGIGYLLGFFAAKWTGLPYDAQKA 261 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhHhhh
Confidence 33344445556666677776666554433
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.24 E-value=56 Score=22.39 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 014688 383 VAVPSAVSVVCMALGGSALAVFWRNQPIP 411 (420)
Q Consensus 383 ~avP~~v~~~~q~l~gs~la~~wr~~~~~ 411 (420)
.+.-++...+.-.++......+||||+++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 33333333444444455556678888654
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.53 E-value=63 Score=22.16 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC
Q 014688 391 VVCMALGGSALAVFWRNQPIPV 412 (420)
Q Consensus 391 ~~~q~l~gs~la~~wr~~~~~~ 412 (420)
.+...++......+||||+++.
T Consensus 20 v~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHHhhhhhhhh
Confidence 3333344455556788876543
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=23.53 E-value=60 Score=20.91 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014688 268 TFQVVLVPTVVGVLANEF 285 (420)
Q Consensus 268 ll~~VllPlllG~llr~~ 285 (420)
++..++.|+++|++++-+
T Consensus 4 i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455789999999998853
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=14.16 E-value=2e+02 Score=19.69 Aligned_cols=22 Identities=5% Similarity=0.247 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 014688 390 SVVCMALGGSALAVFWRNQPIP 411 (420)
Q Consensus 390 ~~~~q~l~gs~la~~wr~~~~~ 411 (420)
..+.-.+.+..+..|+|||+++
T Consensus 20 Gvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhheehhhhh
Confidence 3334445556666677777654
No 8
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=13.08 E-value=7.4e+02 Score=24.39 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhccCCChHHHHHHhcCchH--HHHHHHHHHHHHHHHHHH
Q 014688 140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWT--VGIGFLAQYLIKPMLGFV 189 (420)
Q Consensus 140 ~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~--l~~~l~~~~vl~Plla~~ 189 (420)
+.-...+.+.||..|++++.+.+...++++|. .-.....-=++.|.+.|.
T Consensus 62 windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~ 113 (388)
T 1zcd_A 62 WINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL 113 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG
T ss_pred HHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999998877444444432 222222234577887763
No 9
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=11.42 E-value=38 Score=28.05 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChH-HHHHHhcCchHHHHHHHHH
Q 014688 101 GMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFE-DFRRCLRNPWTVGIGFLAQ 179 (420)
Q Consensus 101 ~~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~-~l~~~l~~p~~l~~~l~~~ 179 (420)
.+++++.+++|+.+.=-+=++.|+++|-.+-.....+..+.+.+.+..+. -| .+++ ++.-. .-.....+.-++|
T Consensus 18 ~~~mlkeFK~Fi~rGNViDLAVgVIIG~AF~~IV~SlV~dIImPlIg~l~--gg--~df~~~l~~~-~i~yG~Fi~avIn 92 (114)
T 3hzq_A 18 GSHMLKEFKEFALKGNVLDLAIAVVMGAAFNKIICSLVENIIMPLIGKIF--GS--VDFAKEWSFW-GIKYGLFIQSVID 92 (114)
T ss_dssp ---CCSSSSCCSSCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SC--SCCCTTCCCS-SCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CC--CCcccCeeee-eeeHHHHHHHHHH
Confidence 45566667777743323333444555554444433333356666665432 12 2333 22111 1123456666789
Q ss_pred HHHHHHHHHHHHHHh
Q 014688 180 YLIKPMLGFVIAMTL 194 (420)
Q Consensus 180 ~vl~Plla~~l~~~~ 194 (420)
|++.-+..|.+.+..
T Consensus 93 FlIiA~viF~~vk~~ 107 (114)
T 3hzq_A 93 FIIIAFALFIFVKIA 107 (114)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888776643
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=8.18 E-value=7.3e+02 Score=23.60 Aligned_cols=6 Identities=17% Similarity=0.229 Sum_probs=2.4
Q ss_pred hHHHHH
Q 014688 298 PLIGVI 303 (420)
Q Consensus 298 ~~is~l 303 (420)
|..+.+
T Consensus 320 P~~a~~ 325 (444)
T 3gia_A 320 STEGLY 325 (444)
T ss_dssp CTHHHH
T ss_pred CcHHHH
Confidence 334433
Done!