Query 014688
Match_columns 420
No_of_seqs 218 out of 1637
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 16:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014688.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014688hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90b_ f.21.1.2 (B:) Cytochro 14.1 3.2E+02 0.023 22.5 11.1 98 102-199 27-140 (212)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 9.7 80 0.0058 23.4 2.7 26 113-138 4-29 (158)
3 d1kqfb2 f.23.22.1 (B:246-290) 5.8 3.4E+02 0.025 16.9 4.1 14 404-417 31-44 (45)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 5.6 3.3E+02 0.024 19.2 4.5 14 398-411 45-58 (100)
5 d1ppjc2 f.21.1.2 (C:15-260) Mi 5.5 4.9E+02 0.036 21.6 6.3 80 99-178 10-105 (246)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.5 4.5E+02 0.033 18.7 4.6 15 397-411 50-64 (107)
7 d2e74d2 f.23.12.1 (D:12-45) IS 2.7 4.2E+02 0.031 15.2 2.1 20 114-133 9-28 (34)
8 d1mpza_ g.20.1.1 (A:) Obtustat 2.3 3.7E+02 0.027 16.4 1.6 19 11-30 8-26 (41)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 2.1 3.1E+02 0.022 19.2 1.1 17 397-413 33-49 (91)
10 d2iuba2 f.17.3.1 (A:286-349) M 1.9 9.1E+02 0.066 15.0 3.5 13 237-249 9-21 (64)
No 1
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.10 E-value=3.2e+02 Score=22.52 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=54.5
Q ss_pred CcHHHHHHHHhhhHHHHHHHHHHHHHHhc-cchhh---------------hhhHhHHHHHHHHHHHHhccCCChHHHHHH
Q 014688 102 MSQYEQIIEILTTLFPVWVILGTIIGIYK-PSAVT---------------WLETDLFTIGLGFLMLSMGLTLTFEDFRRC 165 (420)
Q Consensus 102 ~~~~~r~~~~l~~~~~l~ii~gv~lgl~~-P~~~~---------------~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~ 165 (420)
.+++=.+...+...+.+-++.|+.++.++ |+... |+-...-...--++++.+.+.+-..-+...
T Consensus 27 ~~~~~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~gs 106 (212)
T d1q90b_ 27 VNIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGG 106 (212)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHcCc
Confidence 34433455555666777777898888875 44321 111123334444555555565555555666
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 014688 166 LRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP 199 (420)
Q Consensus 166 l~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~ 199 (420)
.|+||...+.......++-...-..+..++.++.
T Consensus 107 yk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~ 140 (212)
T d1q90b_ 107 FKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQV 140 (212)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHH
T ss_pred ccCcccceehHhHHHHHHHHHHHHhhhhcchhhH
Confidence 7888866554444444444444455666766653
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.70 E-value=80 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHhccchhhhhh
Q 014688 113 TTLFPVWVILGTIIGIYKPSAVTWLE 138 (420)
Q Consensus 113 ~~~~~l~ii~gv~lgl~~P~~~~~l~ 138 (420)
...+.+..++|++.++.+|....+.+
T Consensus 4 IELlVViaIIgILaaia~P~~~~~~~ 29 (158)
T d2pila_ 4 IELMIVIAIVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999877655
No 3
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.84 E-value=3.4e+02 Score=16.93 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=7.5
Q ss_pred HHhcCCCCCCCCCc
Q 014688 404 FWRNQPIPVDDKDD 417 (420)
Q Consensus 404 ~wr~~~~~~~~~~~ 417 (420)
|-+-.+++.+|+||
T Consensus 31 Yv~vGPn~v~ee~e 44 (45)
T d1kqfb2 31 YIGIGPNKEVDDDE 44 (45)
T ss_dssp HHHHCCBCSCSSTT
T ss_pred hheeCCCccccccC
Confidence 44555556665543
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.62 E-value=3.3e+02 Score=19.23 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=6.5
Q ss_pred HHHHHHHHhcCCCC
Q 014688 398 GSALAVFWRNQPIP 411 (420)
Q Consensus 398 gs~la~~wr~~~~~ 411 (420)
+......||+|+++
T Consensus 45 ~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 45 LLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHBTTT
T ss_pred HHHHHHhhhhhccC
Confidence 44444445555433
No 5
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.52 E-value=4.9e+02 Score=21.63 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCCCcHHHHHHHHhhhHHHHHHHHHHHHHHhc-cchhh---------------hhhHhHHHHHHHHHHHHhccCCChHHH
Q 014688 99 PGGMSQYEQIIEILTTLFPVWVILGTIIGIYK-PSAVT---------------WLETDLFTIGLGFLMLSMGLTLTFEDF 162 (420)
Q Consensus 99 ~~~~~~~~r~~~~l~~~~~l~ii~gv~lgl~~-P~~~~---------------~l~~~~~~~~L~l~mf~~Gl~l~~~~l 162 (420)
|+.++++=.++..+.-.+.+-++.|+.++.++ |+... |+-...-...--++++.+.+.+-..-+
T Consensus 10 p~nl~~~w~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~ 89 (246)
T d1ppjc2 10 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 89 (246)
T ss_dssp ETTCCGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHH
Confidence 34455554456555666777788999999885 54321 211123334455555566666666666
Q ss_pred HHHhcCchHHHHHHHH
Q 014688 163 RRCLRNPWTVGIGFLA 178 (420)
Q Consensus 163 ~~~l~~p~~l~~~l~~ 178 (420)
....|+||....|.++
T Consensus 90 ~~sy~~~~~w~~G~~l 105 (246)
T d1ppjc2 90 YGSYTFLETWNIGVIL 105 (246)
T ss_dssp HTGGGSHHHHHHHHHH
T ss_pred hcCccchHHHHHHHHH
Confidence 6677888876666543
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.51 E-value=4.5e+02 Score=18.74 Aligned_cols=15 Identities=13% Similarity=-0.192 Sum_probs=7.2
Q ss_pred HHHHHHHHHhcCCCC
Q 014688 397 GGSALAVFWRNQPIP 411 (420)
Q Consensus 397 ~gs~la~~wr~~~~~ 411 (420)
.+......||.|+.+
T Consensus 50 ~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 50 CLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHSBTTT
T ss_pred HHHHHHHhhhhhccC
Confidence 344444456655443
No 7
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.68 E-value=4.2e+02 Score=15.19 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHhccch
Q 014688 114 TLFPVWVILGTIIGIYKPSA 133 (420)
Q Consensus 114 ~~~~l~ii~gv~lgl~~P~~ 133 (420)
+.+.+--+.|+++|-++|-.
T Consensus 9 nlltfgt~tg~alg~lypvv 28 (34)
T d2e74d2 9 NLLAFGTVTGVALGALYPLV 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhhhhhHH
Confidence 45566677889999888754
No 8
>d1mpza_ g.20.1.1 (A:) Obtustatin {Blunt-nosed viper (Vipera lebetina obtusa) [TaxId: 209528]}
Probab=2.31 E-value=3.7e+02 Score=16.36 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=14.1
Q ss_pred cccccccccccccccCCCCc
Q 014688 11 KNCTNLHASEASFRPTGSSI 30 (420)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (420)
++|+ +++...+.||+.++|
T Consensus 8 ~~Ck-f~~~G~~CR~~cDl~ 26 (41)
T d1mpza_ 8 RQCK-LKPAGTTCWKTSLTS 26 (41)
T ss_dssp TTTB-CSSSCCTTCCCSSSC
T ss_pred CCCe-EcCCCCeeCcccCCC
Confidence 4677 778888888876665
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.09 E-value=3.1e+02 Score=19.15 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcCCCCCC
Q 014688 397 GGSALAVFWRNQPIPVD 413 (420)
Q Consensus 397 ~gs~la~~wr~~~~~~~ 413 (420)
.+.++...||.|+.+.+
T Consensus 33 ~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 33 ILMAVGFAWKYRASNKD 49 (91)
T ss_dssp HHHHHTTTTTTTTSTTT
T ss_pred HHHHHhhheeeeccCCc
Confidence 34444455766654433
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=1.89 E-value=9.1e+02 Score=15.03 Aligned_cols=13 Identities=38% Similarity=0.358 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 014688 237 STIGAIVMTPLLT 249 (420)
Q Consensus 237 stlla~~~~Pl~l 249 (420)
-|+++.+.+|+.+
T Consensus 9 lT~it~iflP~t~ 21 (64)
T d2iuba2 9 LTIIATIFMPLTF 21 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3556666677644
Done!