BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014689
(420 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
vinifera]
gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 201/359 (55%), Positives = 238/359 (66%), Gaps = 46/359 (12%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
R+PEHLMHKNRLQE+ QRS IPLP+YQ+ NEGFQHAPKFR++V VDG TYTSPNTFSHRK
Sbjct: 16 RLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRK 75
Query: 127 AAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALL 186
AAEQDVA++ALE ISKKIKDEGCPLI +DTVFCKSILNEFAVKMNLE P Y+T Q E LL
Sbjct: 76 AAEQDVARLALEFISKKIKDEGCPLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLL 135
Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 246
PVFVSSLVFNGVTYTG+ GR+KKEAEQLAAR VI ++L SGS T+LSEIIKSK KLYAA
Sbjct: 136 PVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSILGNSGSGTLLSEIIKSKVKLYAA 195
Query: 247 LNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPT 306
L++VK+ +Y +GI PI G+ T+GI P
Sbjct: 196 LHRVKDPSY-----------------IHTGILPI--------GL---------TSGIPPC 221
Query: 307 PA----ITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVV 362
+ + + PT+ ++ +S + P H +KPK SE +
Sbjct: 222 KGKEVEVAPGTDQLLPTAVSVPLSGQLVHVPVTHP-------PVHELEKPKPNVSSEVIA 274
Query: 363 LPIPFVPPVLGQ-HSEGGSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQVPPCSVAQ 420
PI FVP V Q ++ + RKNK+KANKKLRTDAQ V+ PL Q PCSVAQ
Sbjct: 275 PPISFVPSVFEQPLVVSPTTGRKRNRKNKKKANKKLRTDAQLPVAVLPLNQASPCSVAQ 333
>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 138/246 (56%), Positives = 179/246 (72%), Gaps = 8/246 (3%)
Query: 23 DPCPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVV--------LTPNRVPEHLMH 74
+P P+ A P PAP +P+ A+++ ++T+ V L +P++LM+
Sbjct: 81 EPTPSPAPVPDPTPNPAPAPDSTLSPSPAASTTTLTSRVSENISFSKKLVKKGLPDNLMY 140
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
KNRLQE+ Q+S + LPVYQ+ NEG H P+FR++V VDG Y S TF HRKAAEQDVA
Sbjct: 141 KNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDVAN 200
Query: 135 IALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLV 194
+ALE I K++KDEGCPL+ DTVFCKSILNEFAVK+N E P Y+T QS LLPVF+S+LV
Sbjct: 201 LALESILKRVKDEGCPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLV 260
Query: 195 FNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESN 254
F+GV+YTG+ GR+KKEAEQLAARAVI +L+ SGS+ IL EIIKSK KLYAAL++VK+ +
Sbjct: 261 FDGVSYTGDAGRNKKEAEQLAARAVILSLIGNSGSSKILYEIIKSKSKLYAALDRVKDPS 320
Query: 255 YSTQKI 260
+S I
Sbjct: 321 HSQPNI 326
>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 289
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 156/336 (46%), Positives = 194/336 (57%), Gaps = 57/336 (16%)
Query: 69 PEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAA 128
PEHLM+KNRLQE+ QR + LP+YQ+ NEG+ H PKFR++V VDG YTS NTFSHRK A
Sbjct: 9 PEHLMYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEA 68
Query: 129 EQDVAKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALL 186
EQDVAK+AL I++KIKDE ++DTV CKSILNE+AVKM LE+P Y+T + L
Sbjct: 69 EQDVAKLALTSITEKIKDEIKDEKFTHEDTVACKSILNEYAVKMQLEMPTYNTVKQGGLF 128
Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 246
P+FVSS VFNGVTY G+ GR+KKEAEQLAARA + +LL S I+S+ KSK KLY
Sbjct: 129 PIFVSSSVFNGVTYNGDIGRTKKEAEQLAARAAVLSLLRNVESGEIISKFFKSKRKLYVG 188
Query: 247 LNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPT 306
+K +Q S +P I T EA + + +P IPEA + +HP
Sbjct: 189 FHKS-----DSQDAQNSNMPVVG--------KDIKT--EALMVSNVVP-IPEAASALHP- 231
Query: 307 PAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIP 366
P H F K K E E + LPI
Sbjct: 232 --------------------------------------PHHEFTKTKPEKICEGIDLPIA 253
Query: 367 FVPPVLGQHSEGGSSSTNKRRKNKRKANKKLRTDAQ 402
FV PV GQ + S KRRKNK+K NKKLR+++Q
Sbjct: 254 FVHPVSGQSVDVALESGKKRRKNKKKPNKKLRSESQ 289
>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
Length = 434
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/177 (54%), Positives = 132/177 (74%), Gaps = 2/177 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KNRLQE +SGI PVYQ+ NEG H+PKFR++V V + YTS +TFSH+KAAE +
Sbjct: 1 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVFV 190
A++ALE I K+ +DEG L+NQ + F KSI+NE+A K+++E P Y+T Q + +LP+F+
Sbjct: 61 ARLALESILKRTRDEGLSLVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPIFI 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAAL 247
+SLVFNG +YTG+P R+KKEAEQ AA+A I +++ S S T+L EIIKSK Y A+
Sbjct: 121 TSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDSSSGTVLVEIIKSKSIFYDAI 177
>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
Length = 385
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 129/188 (68%), Gaps = 3/188 (1%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
++KN L E+ Q++ I +PVYQ+ +EG PK+R++V VD V Y SPNTF +R+AAEQD
Sbjct: 76 FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 191
A++A E ISKK KD+ L+ +D + CKSIL+E+ KM LE P Y+T+ ++ + F S
Sbjct: 136 AARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQS 195
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL---LVTSGSATILSEIIKSKGKLYAALN 248
+LVF+GV YT + GR+KKEAEQLAARA I +L S L +II SK + +A L
Sbjct: 196 TLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQ 255
Query: 249 KVKESNYS 256
KVK+SN+S
Sbjct: 256 KVKDSNFS 263
>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]
Length = 385
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 129/188 (68%), Gaps = 3/188 (1%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
++KN L E+ Q++ I +PVYQ+ +EG PK+R++V VD V Y SPNTF +R+AAEQD
Sbjct: 76 FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 191
A++A E ISKK KD+ L+ +D + CKSIL+E+ KM LE P Y+T+ ++ + F S
Sbjct: 136 AARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQS 195
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL---LVTSGSATILSEIIKSKGKLYAALN 248
+LVF+GV YT + GR+KKEAEQLAARA I +L S L +II SK + +A L
Sbjct: 196 TLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQ 255
Query: 249 KVKESNYS 256
KVK+SN+S
Sbjct: 256 KVKDSNFS 263
>gi|357492171|ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
Length = 357
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 121/172 (70%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN L + A +S + P + S NEG AP +R+SV VDG+ +TS TF HRKAAEQ+V
Sbjct: 27 MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSS 192
A+ ALE ++KK+KDE ++++ FCK++LNE+A K++++LP Y + + + ++P FV +
Sbjct: 87 ARFALEYLTKKVKDEAYSIMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYKEVIPYFVCT 146
Query: 193 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLY 244
L NG +YTG+ R KK+A +LAARA I ++L S S +L++IIK+K KL+
Sbjct: 147 LDLNGTSYTGDAARRKKDAVELAARAAILSILGNSNSGVLLAQIIKTKAKLF 198
>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
Length = 298
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 115/181 (63%), Gaps = 5/181 (2%)
Query: 70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
+ MHKNRLQ A+R+ PVY+ +EG H PKFR +V V G ++S +F +K AE
Sbjct: 44 DKYMHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAE 103
Query: 130 QDVAKIALECISKKIKD---EGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALL 186
QD A+IA E +S +D E LI+QD VFCKSILNEFAVK P+YS E L
Sbjct: 104 QDAARIAYEILSAVGEDDIKEAFGLIDQDAVFCKSILNEFAVKTKTTWPSYSLVYIEKPL 163
Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 246
+F + +VF+G +YTGE R+KK+AEQ AARAVI+++L T + I++SK +L A
Sbjct: 164 TLFAAIVVFDGNSYTGESARNKKDAEQNAARAVIKSILAKHN--TCMVGIVRSKKQLITA 221
Query: 247 L 247
+
Sbjct: 222 V 222
>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium
distachyon]
Length = 281
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 114/182 (62%), Gaps = 10/182 (5%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
+KNRLQE AQR+ LPVY + +G H P+FR++V V G ++S T K AEQD A
Sbjct: 30 YKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQDAA 89
Query: 134 KIALECISKKIKDEGCP------LINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLP 187
++A E + KI D LI+QD +FCKSILNEFAVK P YS + + + P
Sbjct: 90 RVAYEILVAKIMDADADVTDILGLIDQDVLFCKSILNEFAVKTKATQPKYSVDRPQGVSP 149
Query: 188 V--FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYA 245
+ FVSS+VF+G TYTGE SKK+AEQ AARA ++++L T T + +IIKSK L
Sbjct: 150 ISLFVSSVVFDGKTYTGEAAVSKKDAEQKAARAAVKSILATKN--TCMMQIIKSKENLIT 207
Query: 246 AL 247
A+
Sbjct: 208 AI 209
>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays]
gi|194688536|gb|ACF78352.1| unknown [Zea mays]
gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 323
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 7/188 (3%)
Query: 65 PNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH 124
P+ +P+ MHKNRLQ A+R+ P+Y+ +EG H PKF +V V ++S +FS
Sbjct: 50 PSAIPDKYMHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSR 109
Query: 125 RKAAEQDVAKIALEC---ISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQ 181
+K AEQD A++A E +S+ E LI+QD VFCKSIL EFAVK LP+YS
Sbjct: 110 KKEAEQDAARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVC 169
Query: 182 S--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKS 239
+ L +F + +VF+G Y GE +KK+AEQ AAR VI+++L T + I++S
Sbjct: 170 VCLKKPLTLFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSILAKHD--TCMVRIVRS 227
Query: 240 KGKLYAAL 247
K +L A+
Sbjct: 228 KKQLITAV 235
>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|75225116|sp|Q6YW64.1|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4
gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|387538563|gb|AFJ79550.1| double stranded RNA binding protein 1-4 [Oryza sativa Indica Group]
Length = 312
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 126/202 (62%), Gaps = 16/202 (7%)
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR--KAA 128
H +K++LQE+ Q++ LP+Y + +G H KF+++V VDG ++S TF HR K A
Sbjct: 36 HCNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS--TFCHRRVKDA 93
Query: 129 EQDVAKIALECISKKIKDEG-----CPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE 183
EQD AK+A + + ++ + E LI+QD VF KSIL+E+ K + P YS ++E
Sbjct: 94 EQDAAKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTE 153
Query: 184 ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKL 243
+ +VSS+ F G TYTG R+KK+AEQ AARA +++LL T + T +++I++SK KL
Sbjct: 154 GSVTPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLAT--NYTSMAKIVRSKEKL 211
Query: 244 YAAL-----NKVKESNYSTQKI 260
A+ NK +SN + +K+
Sbjct: 212 IRAISPSGYNKGIDSNPTNKKL 233
>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
Length = 310
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 126/202 (62%), Gaps = 16/202 (7%)
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR--KAA 128
H +K++LQE+ Q++ LP+Y + +G H KF+++V VDG ++S TF HR K A
Sbjct: 34 HCNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS--TFCHRRVKDA 91
Query: 129 EQDVAKIALECISKKIKDEG-----CPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE 183
EQD AK+A + + ++ + E LI+QD VF KSIL+E+ K + P YS ++E
Sbjct: 92 EQDAAKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTE 151
Query: 184 ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKL 243
+ +VSS+ F G TYTG R+KK+AEQ AARA +++LL T + T +++I++SK KL
Sbjct: 152 GSVTPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLAT--NYTSMAKIVRSKEKL 209
Query: 244 YAAL-----NKVKESNYSTQKI 260
A+ NK +SN + +K+
Sbjct: 210 IRAISPSGYNKGIDSNPTNKKL 231
>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
gi|414870583|tpg|DAA49140.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
gi|414870584|tpg|DAA49141.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 266
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 109/180 (60%), Gaps = 7/180 (3%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
MHKNRLQ A+R+ P+Y+ +EG H PKF +V V ++S +FS +K AEQD
Sbjct: 1 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60
Query: 133 AKIALEC---ISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLP 187
A++A E +S+ E LI+QD VFCKSIL EFAVK LP+YS + L
Sbjct: 61 ARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 120
Query: 188 VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAAL 247
+F + +VF+G Y GE +KK+AEQ AAR VI+++L + T + I++SK +L A+
Sbjct: 121 LFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSIL--AKHDTCMVRIVRSKKQLITAV 178
>gi|357155520|ref|XP_003577147.1| PREDICTED: double-stranded RNA-binding protein 8-like [Brachypodium
distachyon]
Length = 447
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 7/175 (4%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ++G+P P YQ+ EG H P F+++V VDGV+Y S F RKAAEQ
Sbjct: 13 VFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFSRKAAEQSA 72
Query: 133 AKIALECISKKIK---DEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPV 188
A++AL I+K + P + Q+T CK++L E+A KMN +P+Y S RQ+ + P
Sbjct: 73 AEVALMEIAKSLALPTSATIPAV-QETGLCKNLLQEYAQKMNYAIPSYISHRQASGVAP- 130
Query: 189 FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
F+S++ G+ Y G R+KKEAE AAR + + S GSA S+ I GK
Sbjct: 131 FISTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQGQSDGSANGASKYIVVPGK 185
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 54 SKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG 113
+KS+ P T V E + KN LQE+AQ+ +P Y SH + AP F ++V + G
Sbjct: 81 AKSLALPTSATIPAVQETGLCKNLLQEYAQKMNYAIPSYISHRQASGVAP-FISTVEIGG 139
Query: 114 VTYTSPNTFSHRKAAEQDVAKIALECI 140
+ Y + +K AE A+ AL I
Sbjct: 140 IQYIGAAART-KKEAEIKAARTALLAI 165
>gi|414870580|tpg|DAA49137.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 334
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 81 HAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALEC- 139
A+R+ P+Y+ +EG H PKF +V V ++S +FS +K AEQD A++A E
Sbjct: 77 FAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 136
Query: 140 --ISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVF 195
+S+ E LI+QD VFCKSIL EFAVK LP+YS + L +F + +VF
Sbjct: 137 TTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVVF 196
Query: 196 NGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAAL 247
+G Y GE +KK+AEQ AAR VI+++L T + I++SK +L A+
Sbjct: 197 DGNAYHGESAPNKKDAEQNAARVVIKSILAKHD--TCMVRIVRSKKQLITAV 246
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RK
Sbjct: 27 RVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86
Query: 127 AAEQDVAKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 185
AAEQ A++AL I K I + P + Q+T CK++L E+A KMN +P+Y +S +
Sbjct: 87 AAEQSAAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASG 145
Query: 186 LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
L F+ ++ G+ Y G R+KK+AE AAR + + S GSA ++ I GK
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 14/211 (6%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQS 94
AP P P + +PA A+ + RV + K+RLQE+AQ++G+ P Y +
Sbjct: 6 APTPLPPETANTSPAPIGATAGI---------RVENCYVFKSRLQEYAQKAGLQTPEYHT 56
Query: 95 HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI-KDEGCPLIN 153
EG H P F+++V ++ +Y S FS+RKAAEQ A++AL I K I + P +
Sbjct: 57 SKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAV- 115
Query: 154 QDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAE 212
Q+T CK++L E+A KMN +P+Y T+ + L P F+ ++ G+ Y G R+KK+AE
Sbjct: 116 QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FICTVEIGGIQYIGAAARTKKDAE 174
Query: 213 QLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
AAR + + S GSA ++ I GK
Sbjct: 175 IKAARTALLAIQGQSEGSANGATKYIVVPGK 205
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RK
Sbjct: 27 RVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86
Query: 127 AAEQDVAKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 185
AAEQ A++AL I K I + P + Q+T CK++L E+A KMN +P+Y +S +
Sbjct: 87 AAEQSAAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASG 145
Query: 186 LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
L F+ ++ G+ Y G R+KK+AE AAR + + S GSA ++ I GK
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RK
Sbjct: 27 RVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86
Query: 127 AAEQDVAKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 185
AAEQ A++AL I K I + P + Q+T CK++L E+A KMN +P+Y +S +
Sbjct: 87 AAEQSAAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASG 145
Query: 186 LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
L F+ ++ G+ Y G R+KK+AE AAR + + S GSA ++ I GK
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 12/210 (5%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQS 94
AP P P + +PA A+ + RV + K+RLQE+AQ++G+ P Y +
Sbjct: 6 APTPLPPETANTSPAPIGATAGI---------RVENCYVFKSRLQEYAQKAGLQTPEYHT 56
Query: 95 HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI-KDEGCPLIN 153
EG H P F+++V ++ +Y S FS+RKAAEQ A++AL I K I + P +
Sbjct: 57 SKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAV- 115
Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
Q+T CK++L E+A KMN +P+Y + + L F+ ++ G+ Y G R+KK+AE
Sbjct: 116 QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEI 175
Query: 214 LAARAVIRTLLVTS-GSATILSEIIKSKGK 242
AAR + + S GSA ++ I GK
Sbjct: 176 KAARTALLAIQGQSEGSANGATKYIVVPGK 205
>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
Length = 278
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 7/165 (4%)
Query: 63 LTPNRVPEHL----MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTS 118
+T N VP + + K+RLQE+AQ+ +P P+Y++ EG H F+++V VDGV Y S
Sbjct: 1 MTANDVPSGVSNCYVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDS 60
Query: 119 PNTFSHRKAAEQDVAKIALECISKKIKDEGC-PLINQDTVFCKSILNEFAVKMNLELPAY 177
F +RKAAEQ A++AL+ +SK + C L + CK++L E+A KMN +P Y
Sbjct: 61 LPGFFNRKAAEQSAAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLY 120
Query: 178 STRQSEAL--LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++SE L P F ++ G+ YTG ++K+EAE A R +
Sbjct: 121 QCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGRTAL 165
>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
Length = 277
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 65 PNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH 124
P+ V + K+RLQE+AQ+ +P P+Y++ EG H F+++V VDGV Y S F +
Sbjct: 7 PSGVSNCYVFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFN 66
Query: 125 RKAAEQDVAKIALECISKKIKDEGC-PLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE 183
RKAAEQ A++AL+ +SK + C L + CK++L E+A KMN +P Y ++SE
Sbjct: 67 RKAAEQSAAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSE 126
Query: 184 AL--LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
L P F ++ G+ YTG ++K+EAE A R +
Sbjct: 127 TLGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGRTAL 165
>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
Length = 394
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 59 APVVLTP---NRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVT 115
P+V P RV + K+RLQE+AQ++G+P P Y + EG H P F+++V V+ T
Sbjct: 20 GPIVAVPPAGIRVENCYVFKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTT 79
Query: 116 YTSPNTFSHRKAAEQDVAKIALECISKK---IKDEGCPLINQDTVFCKSILNEFAVKMNL 172
Y S F RKAAEQ A++AL I+ + P + Q+T CK++L E+A KMN
Sbjct: 80 YESLPGFFSRKAAEQSAAEVALMEIAMSAPVAETRSIPAV-QETGLCKNLLQEYAQKMNY 138
Query: 173 ELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
+P+Y T+Q+ + P F+ ++ G+ Y G R+KKEAE AAR +
Sbjct: 139 AIPSYICTKQASGVAP-FICTVEIGGIQYIGAAARTKKEAEIKAARTAL 186
>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
Length = 283
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 3/151 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ +P P+Y++ EG H F+++V VDGV Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIKDEGC-PLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL--LPVF 189
A++AL+ +SK + C L + CK++L E+A KMN +P Y ++SE L P F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ G+ YTG ++KKEAE A R +
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTAL 165
>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
Length = 434
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 10/160 (6%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQR GIP P Y + EG H P F+++V V+ Y S F RK
Sbjct: 31 RVENCYVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRK 90
Query: 127 AAEQDVAKIALECIS-----KKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STR 180
AAEQ A++AL I+ +I++ P + Q+T CK++L E+A KMN +P+Y T+
Sbjct: 91 AAEQSAAEVALMEIAMSAPVTEIRN--MPAV-QETGLCKNLLQEYAQKMNYAIPSYICTK 147
Query: 181 QSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
Q+ + P FV S+ G+ Y G R+KKEAE AAR +
Sbjct: 148 QASGVAP-FVCSVEIGGILYIGAAARTKKEAEIKAARTAL 186
>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ++G+P PVY++ EG H P FR++V V+ V Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIAL-ECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVF 189
A++AL E I + ++ +T CK++L E+A KMN +P Y ++ E VF
Sbjct: 75 AEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ G+ Y G ++KKEAE AAR +
Sbjct: 135 SCTVDIGGILYIGGAAKTKKEAEIKAARTAL 165
>gi|414588756|tpg|DAA39327.1| TPA: bcpLH protein [Zea mays]
Length = 1158
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQR GIP P Y + EG H P F+++V V+ Y S F RK
Sbjct: 755 RVENCYVFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRK 814
Query: 127 AAEQDVAKIALECISKK---IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQS 182
AAEQ A++AL I+ + P + Q+T CK++L E+A KMN +P+Y T+Q+
Sbjct: 815 AAEQSAAEVALMEIAMSAPVTEIRNMPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKQA 873
Query: 183 EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
+ P FV S+ G+ Y G R+KKEAE AAR +
Sbjct: 874 SGVAP-FVCSVEIGGILYIGAAARTKKEAEIKAARTAL 910
>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
Length = 359
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ++G+P PVY++ EG H P FR++V V+ V Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIAL-ECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVF 189
A++AL E I + ++ +T CK++L E+A KMN +P Y ++ E VF
Sbjct: 75 AEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ G+ Y G ++KKEAE AAR +
Sbjct: 135 SCTVDIGGILYIGGAAKTKKEAEIKAARTAL 165
>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
Length = 283
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 23/189 (12%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQR +P P+Y++ EG H P F+++V V+ V Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIKDEGC-PLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL--LPVF 189
A++AL+ ++K C L + CK++L E+A KMN +P Y ++SE L P F
Sbjct: 75 AEVALQGLAKSSDLTQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNK 249
++ G+ YTG ++KKEAE ++SG +++ I+S+ K+ A
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAE------------ISSGRTALIA--IQSESKIDLA--- 177
Query: 250 VKESNYSTQ 258
+NYSTQ
Sbjct: 178 ---NNYSTQ 183
>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 95/167 (56%), Gaps = 6/167 (3%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
+ K+RLQE+AQ++G+P PVY++ EG H P FR++V V+ V Y S F +RKAAEQ
Sbjct: 14 YVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQS 73
Query: 132 VAKIAL-ECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPV 188
A++AL E + ++ +T CK++L E+A KMN +P Y ++ E V
Sbjct: 74 AAEVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 189 FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSE 235
F ++ G+ Y G ++KKEAE AAR LL SA+ SE
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTA---LLAIQSSASHASE 177
>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 425
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 4/179 (2%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RK
Sbjct: 27 RVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86
Query: 127 AAEQDVAKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEA 184
AAEQ A++AL I K I + P + Q+T CK++L E+A KMN +P+Y T+ +
Sbjct: 87 AAEQSAAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASG 145
Query: 185 LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
L P + ++ Y G R+KK+AE AAR + + S GSA ++ I GK
Sbjct: 146 LAPFICTVEIWWEYKYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 204
>gi|225435325|ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 413
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SPN + + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +S + I +T K++L E A ++ LP Y+T R LPVF
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TGEP ++KK+AE+ AA A +L
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSL 153
>gi|18391056|ref|NP_563850.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
gi|75218980|sp|O04492.1|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=Protein HYPONASTIC LEAVES 1; AltName:
Full=dsRNA-binding protein 1; Short=AtDRB1
gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
Length = 419
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ +P PVY+ EG H F+++V +DGV Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV- 188
A++AL ++K + C ++Q +T CK++L E+A KMN +P Y ++ E L V
Sbjct: 75 AEVALRELAKSSELSQC--VSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVT 132
Query: 189 -FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
F ++ G+ YTG R+KK+AE A R +
Sbjct: 133 QFTCTVEIGGIKYTGAATRTKKDAEISAGRTAL 165
>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
Length = 283
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 106/189 (56%), Gaps = 23/189 (12%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQR +P P+Y++ EG H P F+++V V+ V Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIKDEGC-PLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL--LPVF 189
A++AL+ ++K C L + CK++L E+ KMN +P Y ++SE L P F
Sbjct: 75 AEVALQELAKSSDLTQCVSLPVHEMGLCKNLLQEYTQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNK 249
++ G+ YTG ++KKEAE +++G +++ I+S+ K+ A
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAE------------ISAGRTALIA--IQSESKIDLA--- 177
Query: 250 VKESNYSTQ 258
+NYSTQ
Sbjct: 178 ---NNYSTQ 183
>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
Length = 274
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 23/189 (12%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQR +P P+Y++ EG H P F+++V V+ V Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL--LPVF 189
A++AL+ ++K + L + CK++L E+A KMN +P Y ++SE L P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNK 249
++ G+ YTG ++KKEAE +++G +++ I+S+ K+ A
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAE------------ISAGRTALIA--IQSESKMDLA--- 177
Query: 250 VKESNYSTQ 258
+NYSTQ
Sbjct: 178 ---NNYSTQ 183
>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
Length = 275
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 23/194 (11%)
Query: 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
V + K+RLQE+AQR +P P+Y++ EG H P F+++V V+ V Y S F +RKA
Sbjct: 10 VSNCYVFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKA 69
Query: 128 AEQDVAKIALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL- 185
AEQ A++AL+ ++K + L + CK++L E+A KMN +P Y ++SE L
Sbjct: 70 AEQSAAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLG 129
Query: 186 -LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLY 244
P F ++ G+ YTG ++KKEAE +++G +++ I+S+ K+
Sbjct: 130 RAPQFTCTVEIGGIKYTGAATKTKKEAE------------ISAGRTALIA--IQSESKMA 175
Query: 245 AALNKVKESNYSTQ 258
A +NYSTQ
Sbjct: 176 LA------NNYSTQ 183
>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
Length = 283
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQR +P P+Y++ EG H P F+++V V+ V Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL--LPVF 189
A++AL+ ++K + L + CK++L E+A KMN +P Y ++SE L P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ G+ YTG ++KKEAE A R +
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTAL 165
>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
Length = 283
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQR +P P+Y++ EG H P F+++V V+ V Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL--LPVF 189
A++AL+ ++K + L + CK++L E+A KMN +P Y ++SE L P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ G+ YTG ++KKEAE A R +
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTAL 165
>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
Length = 283
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQR +P P+Y++ EG H P F+++V V+ V Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL--LPVF 189
A++AL+ ++K + L + CK++L E+A KMN +P Y ++SE L P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ G+ YTG ++KKEAE A R +
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAEISAGRTAL 165
>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
Length = 400
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 21/165 (12%)
Query: 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
V + K+RLQE+AQ+ G+P P+Y + EG H P F+++V V+ V Y S FS+RKA
Sbjct: 10 VSNCYVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKA 69
Query: 128 AEQDVAKIAL----------ECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY 177
AEQ A++AL ECIS+ + + G CK++L E+A KMN +P Y
Sbjct: 70 AEQSAAEVALVELAKSGNMKECISQPVHETG---------LCKNLLQEYAQKMNYAIPMY 120
Query: 178 STRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ E F ++ G+ Y G R+KKEAE AAR +
Sbjct: 121 VCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTAL 165
>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 21/160 (13%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ G+P P+Y + EG H P F+++V V+ V Y S FS+RKAAEQ
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 133 AKIAL----------ECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS 182
A++AL ECIS+ + + G CK++L E+A KMN +P Y ++
Sbjct: 75 AEVALVELAKSGNMKECISQPVHETG---------LCKNLLQEYAQKMNYAIPMYVCQKD 125
Query: 183 E--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
E F ++ G+ Y G R+KKEAE AAR +
Sbjct: 126 ESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTAL 165
>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SPN + + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEGCP--LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A ++ LP Y+T R LPVF
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTFRSGLGHLPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TGEP ++KK+AE+ AA A +L
Sbjct: 120 TGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSL 153
>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
Length = 403
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SPN + + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +S + I +T K++L E A ++ LP Y+T R LPVF
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TGEP ++KK+AE+ AA A +L
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSL 153
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
V + K+RLQE+AQ++G+P PVY++ EG H P FR++V V V Y S F +RKA
Sbjct: 10 VSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDSLPGFFNRKA 69
Query: 128 AEQDVAKIALECISK--KIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-- 183
AEQ A++AL ++K +I + +N+ T CK++L E+A KMN +P Y ++ E
Sbjct: 70 AEQSAAEVALVELAKAGEINESTSQPVNE-TGLCKNLLQEYAQKMNYAIPLYECQKDETP 128
Query: 184 ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
VF ++ G+ Y G ++KKEAE AAR +
Sbjct: 129 GRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTAL 165
>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 577
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS I LP Y EG HAP+F+A+VS +G + SPN + + AE
Sbjct: 19 MYKNQLQELAQRSCINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEHAA 78
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYS-TRQSEALLPVFV 190
A++AL +S++ + I +T CK++L E A + + LP YS TR LPVF
Sbjct: 79 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYSTTRSGPGHLPVFT 138
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ +T++GE ++KK+AE+ AA A L
Sbjct: 139 CTVELAKMTFSGEAAKTKKQAEKNAAMAAWSAL 171
>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
Length = 361
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
V + K+RLQE+AQ+ G+P PVY++ EG H P FR++V V+ + Y S F +RKA
Sbjct: 11 VSNCYVFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNRKA 70
Query: 128 AEQDVAKIALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSE- 183
AEQ A++AL ++K DE I+Q +T CK++L E+A KMN +P Y +++E
Sbjct: 71 AEQSAAEVALMELAK--CDEVNDSISQPVHETGLCKNLLQEYAQKMNYAIPLYLCQKNES 128
Query: 184 -ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 227
+F ++ G+ Y G ++KKEAE AAR + + +++
Sbjct: 129 PGRGTLFKCTVEIGGIHYIGASAKTKKEAEIKAARTALLAIQLSA 173
>gi|449446736|ref|XP_004141127.1| PREDICTED: uncharacterized protein LOC101222879 [Cucumis sativus]
Length = 446
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 28/242 (11%)
Query: 7 TDIEAVLSSLPQPQLSDPCPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPN 66
T+++ ++S P+P++ ++ ++ +P+ + + TA + P + N
Sbjct: 127 TNLDNKVTSPPRPEVKHEVSYKSSELKESSKDSPIMSNMDVKFTAQS----VEPRIQNTN 182
Query: 67 RVP---------------EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV 111
+ P +HL +KN+LQ +Q+ G+ LP+Y +G HA +FR V +
Sbjct: 183 KSPVVEDFDKECLKLTGMQHL-YKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEI 241
Query: 112 DGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMN 171
DG TY S K AE VAK+AL + + E + D+ K++L E A K
Sbjct: 242 DGKTYESLEFHGTLKDAENAVAKVALMSLCQDGAQE-----DSDSGLYKNLLQEMAQKGG 296
Query: 172 LELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSA 230
L LPAYST QS E +PVFVS++ + G+P R+KK+AE AA+ T + GS
Sbjct: 297 LGLPAYSTSQSGEVHVPVFVSTVKVGEENFEGKPSRTKKQAEMSAAKVAYFT--IKEGSQ 354
Query: 231 TI 232
+I
Sbjct: 355 SI 356
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M K +LQE R LP Y +G H P+F A+V+VDG + SP K A+ D
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 133 AKIALECIS 141
AK+A + S
Sbjct: 61 AKLAFDFFS 69
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 7/158 (4%)
Query: 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
V + K+RLQE+AQ+ G+P PVY++ EG H P F ++V V+ V Y S FS+RKA
Sbjct: 10 VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKA 69
Query: 128 AEQDVAKIALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSE- 183
AEQ A++AL +SK + P ++Q +T CK++L E+A KMN +P Y ++ +
Sbjct: 70 AEQSAAEVALMELSK--SSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDG 127
Query: 184 -ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
+F ++ G+ Y G ++KKEAE AAR +
Sbjct: 128 PGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTAL 165
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 7/158 (4%)
Query: 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
V + K+RLQE+AQ+ G+P PVY++ EG H P F ++V V+ V Y S FS+RKA
Sbjct: 3 VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKA 62
Query: 128 AEQDVAKIALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSE- 183
AEQ A++AL +SK + P ++Q +T CK++L E+A KMN +P Y ++ +
Sbjct: 63 AEQSAAEVALMELSK--SSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDG 120
Query: 184 -ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
+F ++ G+ Y G ++KKEAE AAR +
Sbjct: 121 PGRGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTAL 158
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 3/156 (1%)
Query: 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
V + K+RLQE+AQ++G+P PVY++ EG H P FR++V V V Y S F +RKA
Sbjct: 3 VSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNRKA 62
Query: 128 AEQDVAKIALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--A 184
AEQ A++AL ++K + +E +T CK++L E+A KMN +P Y ++ E
Sbjct: 63 AEQSAAEVALVELAKAGQINESTSQPVHETGLCKNLLQEYAQKMNYAIPLYECQKDETPG 122
Query: 185 LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
VF ++ G+ Y G ++KKEAE AAR +
Sbjct: 123 RGLVFKCTVEIGGIRYIGASAKTKKEAEIKAARTAL 158
>gi|449527097|ref|XP_004170549.1| PREDICTED: double-stranded RNA-binding protein 4-like [Cucumis
sativus]
Length = 247
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 9/164 (5%)
Query: 70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
+HL +KN+LQ +Q+ G+ LP+Y +G HA +FR V +DG TY S K AE
Sbjct: 2 QHL-YKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAE 60
Query: 130 QDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPV 188
VAK+AL + + E + D+ K++L E A K L LPAYST QS E +PV
Sbjct: 61 NAVAKVALMSLCQDGAQE-----DSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPV 115
Query: 189 FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATI 232
FVS++ + G+P R+KK+AE AA+ T + GS +I
Sbjct: 116 FVSTVKVGEENFEGKPSRTKKQAEMSAAKVAYFT--IKEGSQSI 157
>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
Length = 274
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 106/189 (56%), Gaps = 23/189 (12%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQR +P P+Y++ EG H P +++V V+ V Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL--LPVF 189
A++AL+ ++K + L + CK++L E+A KMN +P Y ++SE L P F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNK 249
++ G+ YTG ++KKEAE +++G +++ I+S+ K+ A
Sbjct: 135 TCTVEIGGIKYTGAATKTKKEAE------------ISAGRTALIA--IQSESKMDLA--- 177
Query: 250 VKESNYSTQ 258
+NYSTQ
Sbjct: 178 ---NNYSTQ 183
>gi|357453939|ref|XP_003597250.1| Ribonuclease [Medicago truncatula]
gi|355486298|gb|AES67501.1| Ribonuclease [Medicago truncatula]
Length = 408
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A ++ LP Y+T R LPVF
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVY-KNLLQEIAQRVGAPLPQYTTYRSGLGHLPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
+ G+T+TGEP ++KK+AE+ AA A +L
Sbjct: 120 TGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSL 153
>gi|387538565|gb|AFJ79551.1| double stranded RNA binding protein 3 [Oryza sativa Indica Group]
Length = 593
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +SK+ + +T K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG PG++KK+A++ AA A L
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153
>gi|356543448|ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A ++ LP Y+T R LPVF
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVY-KNLLQEIAQRVGAPLPHYTTYRSGLGHLPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
+ G+T+TGEP ++KK+AE+ AA A L
Sbjct: 120 TGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
Length = 606
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP S + AE
Sbjct: 14 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 73
Query: 133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +SK+ + +T K++L E A + L+LP Y+T R PVF
Sbjct: 74 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 133
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG PG++KK+A++ AA A L
Sbjct: 134 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 166
>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
gi|122169532|sp|Q0DKP4.1|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; AltName:
Full=dsRNA-binding protein 3; Short=OsDRB3
gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
Length = 593
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +SK+ + +T K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG PG++KK+A++ AA A L
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153
>gi|359806420|ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
gi|255644888|gb|ACU22944.1| unknown [Glycine max]
Length = 401
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +S + I +T K++L E A ++ LP Y T R LPVF
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+ +TGEP ++KK+AE+ AA A +L
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSL 153
>gi|226507212|ref|NP_001141877.1| hypothetical protein [Zea mays]
gi|194706274|gb|ACF87221.1| unknown [Zea mays]
gi|414589932|tpg|DAA40503.1| TPA: hypothetical protein ZEAMMB73_809711 [Zea mays]
Length = 392
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 4/161 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+FRA+V+ +G T+ P+ + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LPAY+T R PVF
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVY-KNLLQETAHRAGLKLPAYTTVRSGPGHSPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSA 230
S++ G+++ G+P R+KK+AE+ AA A +L ++ SA
Sbjct: 120 SSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQSTSSA 160
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 160 KSILNEFAVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAAR 217
K+ L E A + LP+Y TR+ P F +++ FNG T+ G G + ++AE AA
Sbjct: 3 KNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAAAE 62
Query: 218 AVIRTLLVTSGSATILSEIIKSKG 241
+ L + S T+ + ++ G
Sbjct: 63 VALARLSLRGPSTTLAARVLDETG 86
>gi|414589931|tpg|DAA40502.1| TPA: double-stranded RNA binding motif family protein [Zea mays]
Length = 354
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+FRA+V+ +G T+ P+ + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LPAY+T R PVF
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVY-KNLLQETAHRAGLKLPAYTTVRSGPGHSPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
S++ G+++ G+P R+KK+AE+ AA A +L
Sbjct: 120 SSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSL 153
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 160 KSILNEFAVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAAR 217
K+ L E A + LP+Y TR+ P F +++ FNG T+ G G + ++AE AA
Sbjct: 3 KNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAAAE 62
Query: 218 AVIRTLLVTSGSATILSEIIKSKG 241
+ L + S T+ + ++ G
Sbjct: 63 VALARLSLRGPSTTLAARVLDETG 86
>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
Length = 352
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+FRA+V+ +G T+ P+ + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LPAY+T R PVF
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVY-KNLLQETAHRAGLKLPAYTTVRSGPGHSPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
S++ G+++ G+P R+KK+AE+ AA A +L
Sbjct: 120 SSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSL 153
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 160 KSILNEFAVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAAR 217
K+ L E A + LP+Y TR+ P F +++ FNG T+ G G + ++AE AA
Sbjct: 3 KNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAAAE 62
Query: 218 AVIRTLLVTSGSATILSEIIKSKG 241
+ L + S T+ + ++ G
Sbjct: 63 VALARLSLRGPSTTLAARVLDETG 86
>gi|356539370|ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +S + I +T K++L E A ++ LP Y T R LPVF
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+ +TGEP ++KK+AE+ AA A +L
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSL 153
>gi|449443363|ref|XP_004139447.1| PREDICTED: double-stranded RNA-binding protein 2-like [Cucumis
sativus]
Length = 414
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + P S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEGCP------LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEAL 185
A++AL +S + G P ++++ V+ K++L E A ++ LP Y+T R
Sbjct: 61 AEVALNALS----NRGPPHSLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 186 LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
LPVF + G+T+TGEP ++KK+AE+ AA A L
Sbjct: 116 LPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++KN LQE AQR G PLP Y + G H P F V + G+T+T ++K AE++
Sbjct: 87 VYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTG-EPAKNKKQAEKNA 145
Query: 133 AKIALECISKKIK 145
A A + + K
Sbjct: 146 AMAAWSALKQLAK 158
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y S EG HAP+F+A+V+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +SK+ + ++++ ++ K++L E A + L+LP Y+T R P+F
Sbjct: 61 AEVALNTLSKRGPSRSLAAKVLDETGIY-KNLLQETAHRAGLKLPVYTTVRSGPGHTPIF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+++TG+P ++KK+A++ AA A L
Sbjct: 120 TCTVELAGMSFTGDPAKTKKQAQKNAAMAAWSAL 153
>gi|449523610|ref|XP_004168816.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
2-like [Cucumis sativus]
Length = 414
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + P S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEGCP------LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEAL 185
A++AL +S + G P ++++ V+ K++L E A ++ LP Y+T R
Sbjct: 61 AEVALNALS----NRGPPHSLAARILDETGVY-KNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 186 LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
LPVF + G+T+TGEP ++KK+AE+ AA A L
Sbjct: 116 LPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++KN LQE AQR G PLP Y + G H P F V + G+T+T ++K AE++
Sbjct: 87 VYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTG-EPAKNKKQAEKNA 145
Query: 133 AKIALECISKKIK 145
A A + + K
Sbjct: 146 AMAAWSALKQLAK 158
>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 464
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 149/315 (47%), Gaps = 39/315 (12%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + P+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +S + I +T K++L E A ++ LP Y+T R PVF
Sbjct: 61 AEVALTSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHQPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL------VTSGSATILSEIIKSKGKLY 244
++ G+T+TGEP ++KK+AE+ AA A +L +S S S+ ++
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEDASSSSEPENSDELEQITIAR 180
Query: 245 AALN-KVKESNYSTQKIATSYVPTTAIP--KSSSGIHPIPTTPEASVGMHSIPTIPEATA 301
A LN ++KE K+A + P + IP K P PT+P+ +P T+
Sbjct: 181 ALLNYRLKE------KMAIANSPNSPIPFSKKFPMQGPRPTSPQP---------VPATTS 225
Query: 302 GIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLE------ 355
I P +T PTS I + + A S TS +P P + P L+
Sbjct: 226 KI--LPLFCPKTTRNRPTSTTI-TDRSVPTRTATSTTSCDRTVP--PRQSPTLDFGSSSS 280
Query: 356 --PPSEPVVLPIPFV 368
P +E ++ P P +
Sbjct: 281 EIPAAEQLLCPYPTI 295
>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
Length = 436
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +S + I +T K++L E A ++ LP Y+T R PVF
Sbjct: 61 AEVALNALSNRGPSHSLASRILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG+P ++KK+AE+ AA A +L
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153
>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
Length = 568
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 96/161 (59%), Gaps = 6/161 (3%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL ++ + + ++++ V+ K++L E A + L+LP Y+T R +PVF
Sbjct: 61 AEVALNTLASRGPSRALAARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHVPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL--LVTSG 228
++ G+++TGEP R+KK+A++ AA A L LV G
Sbjct: 120 SCTVELAGMSFTGEPARTKKQAQKNAAMAAWSALKRLVQHG 160
>gi|356547178|ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 393
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + +P+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A+ AL +S + ++++ V+ K++L E A ++ LP Y+T R LPVF
Sbjct: 61 AEAALNSLSHRGPSHSLAAKILDETGVY-KNLLQEIAQRVGAPLPHYTTYRSGLGHLPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
+ G+T+TGEP ++KK+AE+ AA A L
Sbjct: 120 TGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
>gi|18401724|ref|NP_565672.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
gi|75266001|sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; Short=AtDRB2
gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
Length = 434
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +S + I +T K++L E A ++ LP Y+T R PVF
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG+P ++KK+AE+ AA A +L
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153
>gi|356571155|ref|XP_003553745.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 538
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KNRLQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP S + AE
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 133 AKIALECISKKIKDEGCP--LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL I+K+ ++++ V+ K++L E A + L LP Y+T R P F
Sbjct: 61 AEVALNTIAKRGPSGALAARVLDETGVY-KNLLQETAHRAGLNLPVYTTIRSGPGHGPNF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
S+ G+ +TG+P R+KK+A++ AA A L
Sbjct: 120 SCSVEIAGMHFTGDPSRTKKQAQKNAAMAAWSAL 153
>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
Length = 573
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +SK+ ++++ ++ K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIY-KNLLQETAHRAGLKLPIYTTIRSGPGHTPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G T+TG PG++KK+A++ AA A L
Sbjct: 120 TCTVELAGKTFTGNPGKTKKQAQKNAAMAAWSDL 153
>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN+LQE AQRS LP Y EG HAP+F+A+V+ +G ++ SP +S + AE
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAA 60
Query: 133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +SK+ + +T K++L E A + L+LP Y+T R P F
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPMYTTIRSGPGHTPTFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL----LVTSGSA 230
++ G +TG PG++KK+A++ AA A L LV G A
Sbjct: 121 CTVELAGRIFTGSPGKTKKQAQKNAAMAAWSELKQLPLVGEGEA 164
>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula]
gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]
Length = 780
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 16/167 (9%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K++LQE+AQ++G+ PVY++ EG H P FR++V ++ V Y S F +RKAAEQ A+
Sbjct: 18 KSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSAAE 77
Query: 135 IALECISKKIKDEGCPLINQ-------DTVFCKSILNEFAVKMNLELPAYSTRQSE---A 184
+AL ++K + +NQ +T CK++L E+A KMN +P Y +++ +
Sbjct: 78 VALMELAKTGE------VNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQSKKDDTPPG 131
Query: 185 LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSAT 231
P++ ++ G+ Y G ++K+EAE AAR + + + A+
Sbjct: 132 RAPLYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAIQTNASQAS 178
>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 683
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SPN + + AE
Sbjct: 65 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 124
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFV 190
A++AL +S++ + I +T CK++L E A + + LP Y +TR LPVF
Sbjct: 125 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVFT 184
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARA 218
++ ++++GE ++KK+AE+ AA A
Sbjct: 185 CTVEVANMSFSGEAAKTKKQAEKNAAMA 212
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ + PVY++ EG H F+++V ++GV Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSEAL--LP 187
A++AL+ ++K + C ++Q +T CK++L E+A KMN +P Y ++ E L
Sbjct: 75 AEVALQELAKSSELSQC--VSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQRIETLGRAT 132
Query: 188 VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
F ++ G+ YTG R+KK+AE A R +
Sbjct: 133 QFTCTVEIGGIKYTGAATRTKKDAEISAGRTAL 165
>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
Length = 346
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 11/156 (7%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M K RLQE+ Q++ PLPVY + NEG H P+F+ +V+V+G Y SP F+H+K A+
Sbjct: 1 MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAA 60
Query: 133 AKIALECISKKIKDEGCPLINQDTVFC----KSILNEFAVKMNLELPAYS-TRQSEALLP 187
A+ A+ KK+ ++G L+ + V K++L + A+K N+ P+Y +++ EA P
Sbjct: 61 AEAAV----KKLVNQG--LLPIEEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCP 114
Query: 188 VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
F + + NG Y G+P SKK+A AA IR +
Sbjct: 115 TFTAIVEINGAFYAGDPANSKKDATNKAACKAIRAI 150
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KNRLQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP S + AE
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL ++K+ + ++++ V+ K++L E A + L LP Y+T R P F
Sbjct: 61 AEVALNTLAKRGPSRALAARVLDETGVY-KNLLQETAHRAGLNLPVYTTIRSGPGHGPNF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+ +TG+P R+KK+A++ AA A L
Sbjct: 120 SCTVEIAGMHFTGDPSRTKKQAQKNAAMAAWSAL 153
>gi|225432380|ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 563
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP + + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +SK K ++++ V+ K++L E A + L+LP Y+T R +PVF
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHIPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ +++TGEP ++KK+A++ AA A L
Sbjct: 120 FCTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSAL 153
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 86/158 (54%), Gaps = 18/158 (11%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K++LQE AQ+SG +P Y S +G H P+F+ASV V+GV Y S + F + KAAE
Sbjct: 1 MYKSQLQEFAQKSGWTVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60
Query: 133 AKIALECISKKIKDEGCPLINQD------TVFCKSILNEFAVKMNLELPAYSTRQSEALL 186
AK AL+ ++ G + D T CK++L E+A + LP Y Q E
Sbjct: 61 AKKALDSLTG-----GANGASTDASGSSMTGLCKNVLQEYAQRNGFSLPIY---QIEITG 112
Query: 187 P----VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
P VF +++ GV Y G +SKKEAE AAR I
Sbjct: 113 PSHNSVFAATVEIGGVLYKGGTAKSKKEAEVKAARTAI 150
>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
Length = 403
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 17/150 (11%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ +P PVY+ EG H F+++V +DGV Y S F +RKAAE
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAELS- 73
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV--FV 190
+C+S+ + + G CK++L E+A KMN +P Y ++ E L V F
Sbjct: 74 -----QCVSQPVHETG---------LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFT 119
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ G+ YTG R+KK+AE A R +
Sbjct: 120 CTVEIGGIKYTGAATRTKKDAEISAGRTAL 149
>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP + + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +SK K ++++ V+ K++L E A + L+LP Y+T R +PVF
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHIPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ +++TGEP ++KK+A++ AA A L
Sbjct: 120 FCTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSAL 153
>gi|357134637|ref|XP_003568923.1| PREDICTED: double-stranded RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 559
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G ++ SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFESPTFCSTLRQAEHAA 60
Query: 133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +SK+ + +T K++L E A + L+LP Y+T R P+F
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPEYTTIRSGPGHTPMFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G +TG PG++KK+A++ AA A L
Sbjct: 121 CTVELAGRIFTGNPGKTKKQAQKNAAMAAWSEL 153
>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+++V+ +G T+ SP +S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL ++ + K ++++ V+ K++L E A + L+LP Y+T R +PVF
Sbjct: 61 AEVALNTLASRGPSKALIAGVLDETGVY-KNLLQETAHRAGLKLPVYTTIRSGPGHVPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+++TGE R+KK+A++ AA A L
Sbjct: 120 SCNVELAGMSFTGESARTKKQAQKNAAMAAWSAL 153
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 133 AKIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
A+++L +S ++ K ++++ ++ K++L E A + L+LP Y S R P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIY-KNLLQETAHRAGLDLPMYTSVRSGSCHFPGF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TGE ++KK+AE+ AA A +L
Sbjct: 120 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 54 SKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG 113
SKS+TA ++ E ++KN LQE A R+G+ LP+Y S G H P F +V + G
Sbjct: 74 SKSLTAKIL------DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAG 127
Query: 114 VTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEG 148
+T+T + +K AE++ A A + KK + E
Sbjct: 128 MTFTGESA-KTKKQAEKNAAIAAWSSLKKKKEQEA 161
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 7/157 (4%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KNRLQE AQRS LP Y EG HAP+F+ +V+ +G T+ SP S + AE
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL ++ + + ++++ V+ K++L E A + L LP Y T R +P F
Sbjct: 61 AEVALNTLATRGPSRTLAARVLDETGVY-KNLLQETAHRAGLNLPVYRTIRAGPGHVPNF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQ---LAARAVIRTL 223
++ G+ +TG+P R+KK+A++ +AA + +R L
Sbjct: 120 YCTVEIAGMHFTGDPARTKKQAQKNAAIAAWSALRKL 156
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
gi|75244423|sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 5; Short=AtDRB5
gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 133 AKIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
A+++L +S ++ K ++++ ++ K++L E A + L+LP Y S R P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIY-KNLLQETAHRAGLDLPMYTSVRSGSCHFPGF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TGE ++KK+AE+ AA A +L
Sbjct: 120 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54 SKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG 113
SKS+TA ++ E ++KN LQE A R+G+ LP+Y S G H P F +V + G
Sbjct: 74 SKSLTAKIL------DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAG 127
Query: 114 VTYTSPNTFSHRKAAEQDVAKIALECISK 142
+T+T + +K AE++ A A + K
Sbjct: 128 MTFTGESA-KTKKQAEKNAAIAAWSSLKK 155
>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP+ + + AE
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + + ++++ ++ K++L E A + L LP Y+T R +PVF
Sbjct: 61 AEVALNVLSLRGPARSLTARVLDETGIY-KNLLQETAHRAGLNLPVYTTVRSGPGHVPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+ +TGEP ++KK+AE+ AA A L
Sbjct: 120 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 25 CPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQR 84
C T QA+ A A ++ PA +S+TA V+ E ++KN LQE A R
Sbjct: 50 CTTLRQAEHAAAEVALNVLSLRGPA-----RSLTARVL------DETGIYKNLLQETAHR 98
Query: 85 SGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
+G+ LPVY + G H P F +V + G+ +T + +K AE++ A A + +
Sbjct: 99 AGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGEPAKT-KKQAEKNAAIAAWSALKR 155
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
Length = 394
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 133 AKIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
A+++L +S ++ K ++++ ++ K++L E A + L+LP Y S R P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIY-KNLLQETAHRAGLDLPMYTSVRSGSCHFPGF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+++TGE ++KK+AE+ AA A +L
Sbjct: 120 SCTVELAGMSFTGESAKTKKQAEKNAAIAAWSSL 153
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54 SKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG 113
SKS+TA ++ E ++KN LQE A R+G+ LP+Y S G H P F +V + G
Sbjct: 74 SKSLTAKIL------DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAG 127
Query: 114 VTYTSPNTFSHRKAAEQDVAKIALECISK 142
+++T + +K AE++ A A + +
Sbjct: 128 MSFTGESA-KTKKQAEKNAAIAAWSSLKR 155
>gi|226498844|ref|NP_001146621.1| uncharacterized protein LOC100280218 [Zea mays]
gi|219888055|gb|ACL54402.1| unknown [Zea mays]
gi|224029829|gb|ACN33990.1| unknown [Zea mays]
gi|413917729|gb|AFW57661.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
gi|413917730|gb|AFW57662.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 289
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +SK+ ++++ ++ K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIY-KNLLQETAHRAGLKLPIYTTIRSGPGHTPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G +TG PG++KK+A++ AA A L
Sbjct: 120 ACTVELAGKAFTGNPGKTKKQAQKNAAMAAWSEL 153
>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 357
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ P+ + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDEGCP--LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHSPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
S++ G+++ G+P ++KK AE+ AA A +L
Sbjct: 120 SSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 42 QARVQAPATASASKSVTAPVV-LTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQ 100
QA A A A S+ P LT + E ++KN LQE A R+G+ LPVY + G
Sbjct: 55 QAEHAAAEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPG 114
Query: 101 HAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
H+P F ++V + G+++ + +K AE++ A A + +
Sbjct: 115 HSPVFSSTVELAGMSFAG-DPAKTKKHAEKNAAMAAWSSLKQ 155
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL ++ + K ++++ V+ K++L E A + L LP Y+T R +PVF
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVY-KNLLQETAHRAGLNLPVYTTIRSGPGHVPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+++TGE ++KK+A++ AA L
Sbjct: 120 SCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSAL 153
>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
Length = 357
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ P+ + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDEG--CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALARLSLRGPSSSFTARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHSPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
S++ G+++ G+P ++KK AE+ AA A +L
Sbjct: 120 SSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 15/192 (7%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SPN S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVFESPNYCSTLRQAEHAA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
A++AL +S++ + ++++ VF K++L E A + N+ LP Y +TR LPVF
Sbjct: 61 AELALNVLSRRGPSQSLAARILDETGVF-KNLLQETAQRANVPLPTYTTTRSGPGHLPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL-----------LVTSGSATILSEIIK 238
+ G+ +TG+ G++KK+AE+ AA A TL L S T E I
Sbjct: 120 TCVVEVAGMNFTGDAGKTKKQAEKNAAMAAWATLKQFAKKLAPPSLFYSDEMTEDQEQIS 179
Query: 239 SKGKLYAALNKV 250
LY A KV
Sbjct: 180 IARVLYLAYEKV 191
>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 477
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP+ + + AE
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + + ++++ ++ K++L E A + L LP Y+T R +P F
Sbjct: 64 AEVALNVLSSRGPSRSLTARVLDETGIY-KNLLQETAHRAGLNLPVYTTIRSGPGHVPTF 122
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+ +TGEP ++KK+AE+ AA A L
Sbjct: 123 TCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 156
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 54 SKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG 113
S+S+TA V+ E ++KN LQE A R+G+ LPVY + G H P F +V + G
Sbjct: 77 SRSLTARVL------DETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFTCTVELAG 130
Query: 114 VTYTSPNTFSHRKAAEQDVAKIALECISK 142
+ +T + +K AE++ A A + +
Sbjct: 131 MNFTGEPAKT-KKQAEKNAAIAAWSALKR 158
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL ++ + K ++++ V+ K++L E A + L LP Y+T R +PVF
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVY-KNLLQETAHRAGLNLPVYTTIRSGPGHVPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+++TGE ++KK+A++ AA L
Sbjct: 120 SCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSAL 153
>gi|359488565|ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP+ + + AE
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + + ++++ V+ K++L E A + L LP Y+T R +PVF
Sbjct: 64 AEVALNVLSTRGPSRSLTARVLDETGVY-KNLLQETAHRAGLNLPVYTTVRSGPGHVPVF 122
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL--LVTSGSATILSEIIKSK 240
++ G+ +TGE ++KK+AE+ AA A L + GS + LS+ +S+
Sbjct: 123 TCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESR 175
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 49 ATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRAS 108
+T S+S+TA V+ E ++KN LQE A R+G+ LPVY + G H P F +
Sbjct: 72 STRGPSRSLTARVL------DETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCT 125
Query: 109 VSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
V + G+ +T + + +K AE++ A A + +
Sbjct: 126 VELAGMNFTGESAKT-KKQAEKNAAIAAWSALKR 158
>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP+ + + AE
Sbjct: 72 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 131
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + + ++++ V+ K++L E A + L LP Y+T R +PVF
Sbjct: 132 AEVALNVLSTRGPSRSLTARVLDETGVY-KNLLQETAHRAGLNLPVYTTVRSGPGHVPVF 190
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL--LVTSGSATILSEIIKSK 240
++ G+ +TGE ++KK+AE+ AA A L + GS + LS+ +S+
Sbjct: 191 TCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESR 243
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 49 ATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRAS 108
+T S+S+TA V+ E ++KN LQE A R+G+ LPVY + G H P F +
Sbjct: 140 STRGPSRSLTARVL------DETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCT 193
Query: 109 VSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
V + G+ +T + + +K AE++ A A + +
Sbjct: 194 VELAGMNFTGESAKT-KKQAEKNAAIAAWSALKR 226
>gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP+ + + AE
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + + ++++ V+ K++L E A + L LP Y+T R +PVF
Sbjct: 61 AEVALNVLSTRGPSRSLTARVLDETGVY-KNLLQETAHRAGLNLPVYTTVRSGPGHVPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL--LVTSGSATILSEIIKSK 240
++ G+ +TGE ++KK+AE+ AA A L + GS + LS+ +S+
Sbjct: 120 TCTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVPNLGSLSHLSKEAESR 172
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 49 ATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRAS 108
+T S+S+TA V+ E ++KN LQE A R+G+ LPVY + G H P F +
Sbjct: 69 STRGPSRSLTARVL------DETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFTCT 122
Query: 109 VSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
V + G+ +T + + +K AE++ A A + +
Sbjct: 123 VELAGMNFTGESAKT-KKQAEKNAAIAAWSALKR 155
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|145322916|ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|75273549|sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3; Short=AtDRB3
gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
A++AL +S K K ++++ ++ K++L E A + L+LP Y S R +P F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIY-KNLLQETAHRAGLDLPVYTSVRSGPGHIPTF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+++ GE ++KK+AE+ AA A +L
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL 153
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 25 CPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQR 84
C T QA+ A A + A ++ SKS+TA V+ E ++KN LQE A R
Sbjct: 50 CSTLRQAEHSAAEVA-----LSALSSKGPSKSLTARVL------DETGIYKNLLQETAHR 98
Query: 85 SGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
+G+ LPVY S G H P F +V + G+++ + +K AE++ A A + K
Sbjct: 99 AGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESA-KTKKQAEKNAAIAAWFSLRK 155
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 356
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
A++AL +S K K ++++ ++ K++L E A + L+LP Y S R +P F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIY-KNLLQETAHRAGLDLPVYTSVRSGPGHIPTF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+++ GE ++KK+AE+ AA A +L
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL 153
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 25 CPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQR 84
C T QA+ A A + A ++ SKS+TA V+ E ++KN LQE A R
Sbjct: 50 CSTLRQAEHSAAEVA-----LSALSSKGPSKSLTARVL------DETGIYKNLLQETAHR 98
Query: 85 SGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
+G+ LPVY S G H P F +V + G+++ + +K AE++ A A + K
Sbjct: 99 AGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESA-KTKKQAEKNAAIAAWFSLRK 155
>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
Length = 325
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ P+ + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDEGCP--LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHSPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
S++ G+++ G+P ++KK AE+ AA A +L
Sbjct: 120 SSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 42 QARVQAPATASASKSVTAPVV-LTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQ 100
QA A A A S+ P LT + E ++KN LQE A R+G+ LPVY + G
Sbjct: 55 QAEHAAAEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPG 114
Query: 101 HAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
H+P F ++V + G+++ + +K AE++ A A + +
Sbjct: 115 HSPVFSSTVELAGMSFAG-DPAKTKKHAEKNAAMAAWSSLKQ 155
>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 364
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ P + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LPAY+T R PVF
Sbjct: 61 AEVALARLSTRGPSTYLTARVLDETGVY-KNLLQETAHRAGLKLPAYTTVRSGPGHSPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
SS+ G+++ G+ R+KK+AE+ AA L
Sbjct: 120 ASSVELAGLSFAGDAARTKKQAEKNAAMTAWSAL 153
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 42 QARVQAPATASASKSVTAP-VVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQ 100
QA A A A S P LT + E ++KN LQE A R+G+ LP Y + G
Sbjct: 55 QAEHAAAEVALARLSTRGPSTYLTARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPG 114
Query: 101 HAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI-----SKKIKDEGCPLINQD 155
H+P F +SV + G+++ + +K AE++ A A + ++K GC Q+
Sbjct: 115 HSPVFASSVELAGLSFAG-DAARTKKQAEKNAAMTAWSALKQMPEARKEPGNGCGGEEQE 173
Query: 156 TVFCKSIL 163
V +L
Sbjct: 174 HVVVARVL 181
>gi|322518582|sp|B7E321.1|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
Full=dsRNA-binding protein 5
gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 404
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ P+ + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDEGCP--LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHSPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
S++ G+++ G+P ++KK AE+ AA A +L
Sbjct: 120 SSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 25 CPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQR 84
C T QA+ A A + ++ P S S+TA V+ E ++KN LQE A R
Sbjct: 50 CTTLRQAEHAAAEVALARLSLRGP-----SSSLTARVL------DETGVYKNLLQETAHR 98
Query: 85 SGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK-K 143
+G+ LPVY + G H+P F ++V + G+++ + +K AE++ A A + +
Sbjct: 99 AGLKLPVYTTVRSGPGHSPVFSSTVELAGMSFAG-DPAKTKKHAEKNAAMAAWSSLKQSN 157
Query: 144 IKDEGCPLI 152
I+ PL+
Sbjct: 158 IRTTVSPLV 166
>gi|388495920|gb|AFK36026.1| unknown [Lotus japonicus]
Length = 170
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 4/167 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KNRLQE AQRS LP Y EG HAP+F+A+V+ +G + SP S + AE
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +++ + ++++ V+ K++L E A + L LP Y+T R +P +
Sbjct: 61 AEVALNTFAERGPSRALAARVLDETGVY-KNLLQETAHRAGLNLPVYTTIRSGPGHVPNY 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEI 236
++ G+ +TG+P R+KK+A++ AA A L A +++
Sbjct: 120 SCTVEIAGMHFTGDPARTKKQAQKNAAMAAWSALRKCEHFAAVIASF 166
>gi|356514617|ref|XP_003526002.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 265
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y S EG HAP+F+A++ +G + +P+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++ L +S + ++++ V+ K+++ E A ++ LP Y T R LP+F
Sbjct: 61 AEVPLNSLSHRGPSHSLATKILDETGVY-KNLVQEIAQRVGAPLPHYITYRSGLGHLPIF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
+ + G+T+TGEP ++KK+AE+ AA A L
Sbjct: 120 IRIVELTGITFTGEPAKNKKQAEKNAAMAAWSAL 153
>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
Length = 388
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 86/159 (54%), Gaps = 14/159 (8%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQR+ LP+Y +G HAP+FRA+V+ +G + SPN S + AE
Sbjct: 1 MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVA 60
Query: 133 AKIALECISKK-------IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEA 184
A++A+ +SK+ KD DT K++L E A + L LP Y +TR A
Sbjct: 61 AEVAVNTLSKRGPSGSLVAKDL------DDTGVYKNLLQEIAHRAGLSLPVYTTTRSGPA 114
Query: 185 LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
LPVF + G + G+P +KK+AEQ A A L
Sbjct: 115 HLPVFKCIVDVFGTRFNGKPAATKKQAEQNTAMAAWSAL 153
>gi|75251129|sp|Q5N8Z0.1|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=dsRNA-binding protein 1
gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 441
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
+K++LQ +AQ+ G LP YQ+ EG HA +F++ V+VDG + SP F K AE A
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 134 KIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL-LPVFVS 191
K+AL + ++ E P+ + K++L E A K LP YST ++ +P+F S
Sbjct: 147 KLALMSLPQEASSSEQVPV---QPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIR 221
++VF ++ GEP +KK+AE AAR +
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQ 233
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR-KAAEQD 131
M+K+RLQE Q+ P Y G HAP F A+VSV+GV + +P + K A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
AK A + +S P + + KS L +A K LP+Y T R+ F
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSY-KSQLQIYAQKKGKLLPSYQTIREGPGHASRFK 119
Query: 191 SSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL 223
S + +G + E + KEAE AA+ + +L
Sbjct: 120 SVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV-DGVTYTSP-NTFSHRKAAE 129
L +KN LQE AQ+ G LPVY + ++G P F+++V DG P NT +K AE
Sbjct: 168 LSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANT---KKQAE 224
Query: 130 QDVAKIALECISKKIKD 146
+ A++A + + K+
Sbjct: 225 MNAARVAFQHFEDRRKN 241
>gi|413917728|gb|AFW57660.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 170
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 87/161 (54%), Gaps = 18/161 (11%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 133 AKIALECISK---------KIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQS 182
A++AL +SK K+ DE T K++L E A + L+LP Y+T R
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDE--------TGIYKNLLQETAHRAGLKLPIYTTIRSG 112
Query: 183 EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
PVF ++ G +TG PG++KK+A++ AA A L
Sbjct: 113 PGHTPVFACTVELAGKAFTGNPGKTKKQAQKNAAMAAWSEL 153
>gi|255587179|ref|XP_002534167.1| conserved hypothetical protein [Ricinus communis]
gi|223525754|gb|EEF28216.1| conserved hypothetical protein [Ricinus communis]
Length = 89
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Query: 170 MNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGS 229
MNL P Y+T Q E L PVF+SSL+F+G TYTGE SKKEAEQLAA AVI+TLL
Sbjct: 1 MNLRTPKYTTIQKEELRPVFISSLLFDGKTYTGEVCASKKEAEQLAAMAVIKTLL--GSD 58
Query: 230 ATILSEIIKSKGKLYAALNKVKESNY 255
+L +II SK K+Y A +K + S++
Sbjct: 59 LVVLRQIINSKNKVYNARHKFRNSSF 84
>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|75261835|sp|Q9AV50.1|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
Full=dsRNA-binding protein 6
gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH-RKAAEQD 131
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP F+ R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFV 190
+ I +T K++L E A ++ LP+Y+T +S LPVF
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG+P ++KK+AE+ AA A +L
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSL 153
>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 1053
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 31/181 (17%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SPN + + AE
Sbjct: 230 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 289
Query: 133 AKIALECISKK-----------------------------IKDEGCPLINQDTVFCKSIL 163
A++AL +S++ +++G + ++ V CK++L
Sbjct: 290 AEVALNTLSRRGPSQSLAARILVSGAVIGAGCGGMNGGMGWEEQGMRVWDETGV-CKNLL 348
Query: 164 NEFAVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRT 222
E A + + LP Y +TR LPVF ++ +T++GE ++KK+AE+ AA A
Sbjct: 349 QETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAMAAWSA 408
Query: 223 L 223
L
Sbjct: 409 L 409
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH-RKAAEQD 131
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP F+ R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFV 190
+ I +T K++L E A ++ LP Y+T +S LPVF
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG+P ++KK+AE+ AA A L
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSAL 153
>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
Length = 351
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
+K++LQ +AQ+ G LP YQ+ EG HA +F++ V+VDG + SP F K AE A
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 134 KIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL-LPVFVS 191
K+AL + ++ E P+ + K++L E A K LP YST ++ +P+F S
Sbjct: 147 KLALMSLPQEASSSEQVPV---QPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++VF ++ GEP +KK+AE AAR +
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHF 235
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR-KAAEQD 131
M+K+RLQE Q+ P Y G HAP F A+VSV+GV + +P + K A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
AK AL+ +S P + + KS L +A K LP+Y T R+ F
Sbjct: 61 AAKAALDHLSSLPLPPPPPPSENQSSY-KSQLQIYAQKKGKLLPSYQTIREGPGHASRFK 119
Query: 191 SSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL 223
S + +G + E + KEAE AA+ + +L
Sbjct: 120 SVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 104/182 (57%), Gaps = 9/182 (4%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP FS + AE
Sbjct: 4 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 63
Query: 133 AKIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S++ + ++++ V+ K++L E A + + LP Y+T R LPVF
Sbjct: 64 AEVALNTLSRRGPPQSLAARILDETGVY-KNLLQETAQRAGVPLPIYTTVRSGPGHLPVF 122
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL--LVTSG--SATIL-SEIIKSKGKLY 244
++ G+ +TGE ++KK+AE+ AA +L G SAT+L SE+ + + + +
Sbjct: 123 TCTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQYAKQGGTSATLLESEVTEEQEQNF 182
Query: 245 AA 246
A
Sbjct: 183 VA 184
>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
Length = 1030
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
+K++LQ +AQ+ G LP YQ+ EG HA +F++ V+VDG + SP F K AE A
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 134 KIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL-LPVFVS 191
K+AL + ++ E P+ + K++L E A K LP YST ++ +P+F S
Sbjct: 147 KLALMSLPQEASSSEQVPV---QPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIR 221
++VF ++ GEP +KK+AE AAR +
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQ 233
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR-KAAEQD 131
M+K+RLQE Q+ P Y G HAP F A+VSV+GV + +P + K A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
AK A + +S P + + KS L +A K LP+Y T R+ F
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSY-KSQLQIYAQKKGKLLPSYQTIREGPGHASRFK 119
Query: 191 SSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL 223
S + +G + E + KEAE AA+ + +L
Sbjct: 120 SVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV-DGVTYTSP-NTFSHRKAAE 129
L +KN LQE AQ+ G LPVY + ++G P F+++V DG P NT +K AE
Sbjct: 168 LSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANT---KKQAE 224
Query: 130 QDVAKIALECISKKIKD 146
+ A++A + + K+
Sbjct: 225 MNAARVAFQHFEDRRKN 241
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 9/160 (5%)
Query: 67 RVPEHLMH--KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH 124
+ PE + H K +LQ +AQ+ +PLP+Y + G H +F++ V+++ TY SP+ F
Sbjct: 150 QTPEGMQHLYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPT 209
Query: 125 RKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE- 183
K AE AK+AL +S D K++L E A K +LP YST +S
Sbjct: 210 LKDAEHAAAKLALMSLSP------AGFQEDDYGVYKNLLQEMARKEGYQLPVYSTEKSGV 263
Query: 184 ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
+ +P F+S++ G T+ G+ ++KK AE AA+A L
Sbjct: 264 SHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHL 303
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K RLQE R P Y + +G H P F A+VSV G+++++ + K A+ +
Sbjct: 1 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 60
Query: 133 AKIALECIS 141
A +A++ ++
Sbjct: 61 AGLAIQYLT 69
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH-RKAAEQD 131
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP F+ R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFV 190
+ I +T K++L E A ++ LP Y+T +S LPVF
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+ G+P ++KK+AE+ AA A L
Sbjct: 121 CTVELAGITFAGDPAKNKKQAEKNAASAAWSAL 153
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH-RKAAEQD 131
M+KN+LQE AQRS LP Y EG HAP+F+A+V +G + SP F+ R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVIFNGEQFESPGFFTTLRQAEHAA 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFV 190
+ I +T K++L E A ++ LP+Y+T +S LPVF
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG+ ++KK+AE+ AA A +L
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSSL 153
>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
Length = 448
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQ 130
L +KN+LQE+AQ+ G LP Y+ + G AP F++ V++DG T+ SP K AE
Sbjct: 91 QLRYKNQLQEYAQKRGKLLPSYRPIHGGSLRAPLFKSEVTIDGQTFESPEYCRTMKEAET 150
Query: 131 DVAKIALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPV 188
AK+AL + ++ + PL +V K++L EF K LP Y +T
Sbjct: 151 AAAKVALMFLPQEAGPTQQLPL---PSVSYKNLLQEFVQKEGFPLPTYDTTLDVSNYSAA 207
Query: 189 FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIR 221
F+S++ G T+ GEPG +KK+AE AA+ +
Sbjct: 208 FISTVEIQGATFRGEPGNTKKQAEMNAAKIAFQ 240
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 21/211 (9%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR-KAAEQD 131
M+K+RLQE Q+ PVY+ EG H P FRA+V V+G +++SP+ K A
Sbjct: 1 MYKSRLQELCQKRRWAPPVYEPTREGPAHTPLFRATVVVNGESFSSPDEGERSVKEACNL 60
Query: 132 VAKIALECIS------KKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 185
A A E +S P + + K+ L E+A K LP+Y +L
Sbjct: 61 AAMAAFENLSALPAEAPAPAPAPAPPPPETQLRYKNQLQEYAQKRGKLLPSYRPIHGGSL 120
Query: 186 -LPVFVSSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL-----------LVTSGSATI 232
P+F S + +G T+ E R+ KEAE AA+ + L L + +
Sbjct: 121 RAPLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVALMFLPQEAGPTQQLPLPSVSYKNL 180
Query: 233 LSEIIKSKGK-LYAALNKVKESNYSTQKIAT 262
L E ++ +G L + SNYS I+T
Sbjct: 181 LQEFVQKEGFPLPTYDTTLDVSNYSAAFIST 211
>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
Length = 190
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP FS + AE
Sbjct: 1 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 60
Query: 133 AKIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S++ + ++++ V+ K++L E A + + LP Y+T R LPVF
Sbjct: 61 AEVALNTLSRRGPPQSLAARILDETGVY-KNLLQETAQRAGVPLPIYTTVRSGPGHLPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+ +TGE ++KK+AE+ AA +L
Sbjct: 120 TCTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSL 153
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 60 PVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSP 119
P L + E ++KN LQE AQR+G+PLP+Y + G H P F +V V G+ +T
Sbjct: 74 PQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFTCTVGVGGMIFTGE 133
Query: 120 NTFSHRKAAEQDVAKIAL 137
+K AE++ A A
Sbjct: 134 AA-KTKKQAEKNAAMTAW 150
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH-RKAAEQD 131
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP FS R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFSTLRQAEHAA 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFV 190
+ I +T K++L E A ++ LP Y+T +S LPVF
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGVGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG+ ++KK+AE+ AA A L
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSAL 153
>gi|357462007|ref|XP_003601285.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
gi|355490333|gb|AES71536.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
Length = 343
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 67/111 (60%)
Query: 42 QARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQH 101
Q ++Q S+ + + L + + ++K++LQ+ QR G +P YQS NEG QH
Sbjct: 12 QYKLQIILNYSSKAHILVYIPLITSFLFVTKVYKSKLQDFVQRCGYVVPAYQSINEGMQH 71
Query: 102 APKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLI 152
A KFR++V++ G+T T++ RK AEQ++AKIALE ++KIK + +
Sbjct: 72 ASKFRSNVTMGGITINGQGTYARRKDAEQEIAKIALEYFTEKIKGDVWSFV 122
>gi|357146672|ref|XP_003574072.1| PREDICTED: double-stranded RNA-binding protein 6-like [Brachypodium
distachyon]
Length = 502
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH-RKAAEQD 131
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP F+ R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKASVTFNGELFESPGFFTTLRQAEHAA 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
+ I +T K++L E A ++ LP+Y+T R LPVF
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+ +TG+ ++KK+AE+ AA A +L
Sbjct: 121 CTVELAGIIFTGDHAKNKKQAEKNAASAAWASL 153
>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 397
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP EG HAP+F+A+V+ +G T+ P+ + + AE
Sbjct: 24 MYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 83
Query: 133 AKIALECISKKIKDEG--CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LP Y+T R PVF
Sbjct: 84 AEVALARLSLRGPSSSLTARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHSPVF 142
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQ 213
S++ G+++ G+P ++KK AE+
Sbjct: 143 SSTVELAGMSFAGDPAKTKKHAEK 166
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 25 CPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQR 84
C T QA+ A A + ++ P S S+TA V+ E ++KN LQE A R
Sbjct: 73 CTTLRQAEHAAAEVALARLSLRGP-----SSSLTARVL------DETGVYKNLLQETAHR 121
Query: 85 SGIPLPVYQSHNEGFQHAPKFRASVSVDGVTY 116
+G+ LPVY + G H+P F ++V + G+++
Sbjct: 122 AGLKLPVYTTVRSGPGHSPVFSSTVELAGMSF 153
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 4/149 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K++LQE+AQ+ G+ P Y+ EG H P+F+++V V+G Y S + ++AE
Sbjct: 1 MYKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGYESAPGYPTLRSAEHAA 60
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFVS 191
AK AL+ + +K + + P+ ++ CK++L EFA K LP Y S RQ E VF S
Sbjct: 61 AKAALDFL-QKTQFKVVPV--HESGLCKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFSS 117
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ GV+Y+G +SKKEAE AAR +
Sbjct: 118 TVEIAGVSYSGGCAKSKKEAEIKAARTAL 146
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
V E + KN LQE AQ+ G PLP Y+S +G +H+ F ++V + GV+Y+ S +K
Sbjct: 78 VHESGLCKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFSSTVEIAGVSYSGGCAKS-KKE 136
Query: 128 AEQDVAKIALECI 140
AE A+ AL I
Sbjct: 137 AEIKAARTALLAI 149
>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
Length = 505
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
MHKN+LQ+ A R G LP Y S +G H P F+A V+ T+ SP+ + + AE
Sbjct: 266 MHKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETFESPDFYGTLRQAEHAA 325
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFVS 191
A +AL+ ++K EG + ++ K+ L EFA K + P Y T R + +P+F S
Sbjct: 326 AAVALKSLTK----EGFSI--DESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFKS 379
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++ F G T+ G+ SKK+AE+ AA A
Sbjct: 380 TVKFAGTTFAGKEANSKKQAEKNAAMAAW 408
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KNRLQE AQ+ + LP Y+S EG HAP+F+A+V+ +G + SP K A+
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60
Query: 133 AKIALECI 140
A+ ALE +
Sbjct: 61 AEFALEVL 68
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
+ E M+KN LQE AQ+ GIP P Y + G H P F+++V G T+ S +K
Sbjct: 340 IDESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFKSTVKFAGTTFAGKEANS-KKQ 398
Query: 128 AEQDVAKIALECI 140
AE++ A A +
Sbjct: 399 AEKNAAMAAWSAV 411
>gi|414880296|tpg|DAA57427.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 459
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
L +K++LQ +AQ+ G LP Y+ + G HAP F++ V++DG T+ SP K AE
Sbjct: 93 LPYKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETV 152
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEA-LLPVFV 190
AK+AL + ++ L+ +V K++L E K LP Y+T + FV
Sbjct: 153 AAKVALMSLPQEANPTQQLLL--PSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFV 210
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIR 221
S++ +GVT+ G+PG +KK+AE AA++
Sbjct: 211 STVEIHGVTFHGKPGNTKKQAEMNAAKSAFE 241
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K+RLQE Q+ P+Y+ EG HAP FRA+V V+G FS R E+ +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNG------ERFSSRDEGEKSL 54
Query: 133 AK----IALECISKKIKDEGCPLI----------NQDTVFCKSILNEFAVKMNLELPAYS 178
+ A+ I L ++ + KS L +A K LP+Y
Sbjct: 55 KEAYNLAAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYR 114
Query: 179 TRQSEAL-LPVFVSSLVFNGVTYTG-EPGRSKKEAEQLAARAVI-----------RTLLV 225
+L P+F S + +G T+ E + KEAE +AA+ + + LL
Sbjct: 115 PIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANPTQQLLLP 174
Query: 226 TSGSATILSEIIKSKGKLYAALNKVKE-SNYSTQKIAT 262
+ +L E+++ +G N + SNYS ++T
Sbjct: 175 SVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVST 212
>gi|293336145|ref|NP_001169453.1| uncharacterized protein LOC100383324 [Zea mays]
gi|224029475|gb|ACN33813.1| unknown [Zea mays]
Length = 459
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQ 130
L +K++LQ +AQ+ G LP Y+ + G HAP F++ V++DG T+ SP K AE
Sbjct: 92 QLPYKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAET 151
Query: 131 DVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEA-LLPVF 189
AK+AL + ++ L+ +V K++L E K LP Y+T + F
Sbjct: 152 VAAKVALMSLPQEANPTQQLLL--PSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAF 209
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
VS++ GVT+ G+PG +KK+AE AA++
Sbjct: 210 VSTVEIRGVTFHGKPGNTKKQAEMNAAKSAF 240
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K+RLQE Q+ P+Y+ EG HAP FRA+V V+G FS R E+ +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNG------ERFSSRDEGEKSL 54
Query: 133 AK----IALECISKKIKDEGCPLI----------NQDTVFCKSILNEFAVKMNLELPAYS 178
+ A+ I L ++ + KS L +A K LP+Y
Sbjct: 55 KEAYNLAAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYR 114
Query: 179 TRQSEAL-LPVFVSSLVFNGVTYTG-EPGRSKKEAEQLAARAVI-----------RTLLV 225
+L P+F S + +G T+ E + KEAE +AA+ + + LL
Sbjct: 115 PIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANPTQQLLLP 174
Query: 226 TSGSATILSEIIKSKGKLYAALNKVKE-SNYSTQKIAT 262
+ +L E+++ +G N + SNYS ++T
Sbjct: 175 SVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVST 212
>gi|414880297|tpg|DAA57428.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 472
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
L +K++LQ +AQ+ G LP Y+ + G HAP F++ V++DG T+ SP K AE
Sbjct: 93 LPYKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETV 152
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEA-LLPVFV 190
AK+AL + ++ L+ +V K++L E K LP Y+T + FV
Sbjct: 153 AAKVALMSLPQEANPTQQLLL--PSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFV 210
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
S++ +GVT+ G+PG +KK+AE AA++
Sbjct: 211 STVEIHGVTFHGKPGNTKKQAEMNAAKSAF 240
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 26/214 (12%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K+RLQE Q+ P+Y+ EG HAP FRA+V V+G ++S + K+ ++
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRD--EGEKSLKEAY 58
Query: 133 AKIALECISKKIKDEGCPLI----------NQDTVFCKSILNEFAVKMNLELPAYSTRQS 182
A+ I L ++ + KS L +A K LP+Y
Sbjct: 59 NLAAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHG 118
Query: 183 EAL-LPVFVSSLVFNGVTYTG-EPGRSKKEAEQLAARAVI-----------RTLLVTSGS 229
+L P+F S + +G T+ E + KEAE +AA+ + + LL +
Sbjct: 119 GSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEANPTQQLLLPSVNY 178
Query: 230 ATILSEIIKSKGKLYAALNKVKE-SNYSTQKIAT 262
+L E+++ +G N + SNYS ++T
Sbjct: 179 KNLLQELVQKEGFPLPIYNTASDVSNYSAAFVST 212
>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP+ + + AE
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDEGCP---LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPV 188
A++AL +S + L+ +T K++L E A + L LPAY+T R +PV
Sbjct: 61 AEVALNVLSSRGPARSLTARVLMKDETGIYKNLLQETAHRAGLNLPAYTTVRSGPGHVPV 120
Query: 189 FVSSLVFNGVTYT 201
F ++ G+ +T
Sbjct: 121 FTCTVELAGMNFT 133
>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
Length = 355
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++K +LQ +A + + LPVY + EG HAP+FR +V+ G T+ S F K+AE
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVS 191
AKIA+ ++ + EG V K++L E A K + LP Y+T S + P F S
Sbjct: 64 AKIAVASLTPQ-SPEGI------DVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 116
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ F G ++GE ++KK AE AA+ ++
Sbjct: 117 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148
>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4; Short=AtDRB4
gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 355
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++K +LQ +A + + LPVY + EG HAP+FR +V+ G T+ S F K+AE
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVS 191
AKIA+ ++ + EG V K++L E A K + LP Y+T S + P F S
Sbjct: 64 AKIAVASLTPQ-SPEGI------DVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 116
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ F G ++GE ++KK AE AA+ ++
Sbjct: 117 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148
>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 329
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++K +LQ +A + + LPVY + EG HAP+FR +V+ G T+ S F K+AE
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVS 191
AKIA+ ++ + EG V K++L E A K + LP Y+T S + P F S
Sbjct: 64 AKIAVASLTPQ-SPEGI------DVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 116
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ F G ++GE ++KK AE AA+ ++
Sbjct: 117 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148
>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAA 128
+HL KN+LQ +AQ+ LPVY G HA +F+ V+V+G TY S F + KA
Sbjct: 2 QHLF-KNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQEYFPTLNKAE 60
Query: 129 EQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLP 187
+ +S ++++G KS+L E A + LP Y T +S EA +P
Sbjct: 61 LAAAKAALMSLLSNGVEEDGFGY--------KSLLQELAQREGCGLPTYWTDKSGEAHVP 112
Query: 188 VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
FVS + G +TG+ ++KK+AE AA+ L
Sbjct: 113 TFVSKVEIEGEIFTGQGAKTKKQAEMSAAKIAYTAL 148
>gi|224135513|ref|XP_002322092.1| predicted protein [Populus trichocarpa]
gi|222869088|gb|EEF06219.1| predicted protein [Populus trichocarpa]
Length = 134
Score = 75.5 bits (184), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/57 (64%), Positives = 41/57 (71%)
Query: 91 VYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE 147
VY + NEGF HA KFR+ V V G TY S TFSHRK AEQDV K ALECI +K+K E
Sbjct: 4 VYHTTNEGFHHATKFRSIVLVYGTTYASRLTFSHRKEAEQDVEKFALECIKEKLKVE 60
>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
Length = 345
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 18/152 (11%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++K +LQ +A + + LPVY + EG HAP+FR +V+ G T+ S F K+AE
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVS 191
AKIA D + K++L E A K + LP Y+T S + P F S
Sbjct: 64 AKIA----------------GIDVAY-KNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 106
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ F G ++GE ++KK AE AA+ ++
Sbjct: 107 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 138
>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 20/182 (10%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++K +LQ +A + + LPVY + EG HAP+FR V+ G T+ S F K+AE
Sbjct: 4 VYKGQLQAYALKHNLELPVYANEREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHAA 63
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVS 191
AKIAL ++ + + + A K N LP Y+T S + P F+S
Sbjct: 64 AKIALASLTPQSPEA-----------------KIAQKENSMLPVYATATSGPSHSPTFIS 106
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVK 251
++ F G +TG+ ++KK AE AA+ I + + +G++ S S + AA + VK
Sbjct: 107 TVEFAGKVFTGDEAKTKKLAEMSAAK--IAFMSIKNGNSNQTSSPSLSCERQEAASSNVK 164
Query: 252 ES 253
S
Sbjct: 165 SS 166
>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
+ K RLQE+AQ+ G+P P+Y++ EG H P FR++V V+ + Y S F +RKAAEQ
Sbjct: 14 YVFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQS 73
Query: 132 VAKIAL----------ECISKKIKDEGC 149
++AL +CIS+ + + GC
Sbjct: 74 AVEVALMELAKCDEVNDCISQPVAEAGC 101
>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K++LQ +AQ+ LPVY G H+ +F+ V+V+G T+ S FS AE
Sbjct: 87 LFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFKCKVTVNGQTFESLEYFSTLNKAEHAA 146
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVS 191
AK AL + +E L ++ + K++L E A + LP YST +S EA +P F+S
Sbjct: 147 AKAALMSLLPNGVEEVSFLFMDESGY-KNLLQELAQREGCGLPTYSTNKSGEAHVPTFIS 205
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G +TG+ ++KK+AE AA+ L
Sbjct: 206 TVEIEGEIFTGQGAKTKKQAEMSAAKTAYTAL 237
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K++LQE Q+ LP Y+S +G H P+F A+V+V+ +++ SP+ + K A+ D
Sbjct: 1 MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60
Query: 133 AKIALECISKKIKDEGCPLINQDT-VFCKSILNEFAVKMNLELPAYS 178
AK+A E S D KS L +A K N LP YS
Sbjct: 61 AKLAYEHFSISRPSPSPSPPVSDMQRLFKSQLQTYAQKRNFALPVYS 107
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
+KN LQE AQR G LP Y ++ G H P F ++V ++G +T +K AE A
Sbjct: 172 YKNLLQELAQREGCGLPTYSTNKSGEAHVPTFISTVEIEGEIFTGQGA-KTKKQAEMSAA 230
Query: 134 KIALECISKK 143
K A + ++
Sbjct: 231 KTAYTALKQR 240
>gi|50252900|dbj|BAD29130.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50252945|dbj|BAD29198.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125605264|gb|EAZ44300.1| hypothetical protein OsJ_28921 [Oryza sativa Japonica Group]
Length = 363
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 123 SHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS 182
SH + AEQ+ + E E LI+Q+ C +LN+F+++ N+ P+Y T +
Sbjct: 24 SHHREAEQNDSFTRREYTCADFI-EALRLIDQEAFKCSIVLNDFSMRANITEPSYRTVKL 82
Query: 183 EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKS 239
+ + FVSS++ G TYTGE + +A++ AAR I+++LV + T + +++S
Sbjct: 83 DGICSTFVSSVLAGGYTYTGEVATTDGDAKENAARVAIKSILVDIIAVTRSNHMLES 139
>gi|125563274|gb|EAZ08654.1| hypothetical protein OsI_30925 [Oryza sativa Indica Group]
Length = 363
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 123 SHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS 182
SH + AEQ+ + E E LI+Q+ C +LN+F+++ N+ P+Y T +
Sbjct: 24 SHHREAEQNDSFTRREYTCADFI-EALRLIDQEAFKCSIVLNDFSMRANITEPSYRTVKL 82
Query: 183 EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKS 239
+ + FVSS++ G TYTGE + +A++ AAR I+++LV + T + +++S
Sbjct: 83 DGICSTFVSSVLAGGYTYTGEVATTDGDAKENAARVAIKSILVDIIAVTRSNHMLES 139
>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQ 130
HL KN+LQ +AQ+ PVY G HA +F+ V+V+G TY S F AE
Sbjct: 134 HLF-KNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTYESREYFPTLSKAEN 192
Query: 131 DVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVF 189
AK AL + + +D K++L + A + LP Y T +S EA P F
Sbjct: 193 AAAKAALMSLLPNG-------VEEDESGYKNLLQDMAQREGCGLPTYFTEKSGEAHAPTF 245
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
+S++ +GV +TG+ R+KK+AE AA+
Sbjct: 246 ISTVEIDGVNFTGKEARNKKQAEMSAAK 273
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K++LQ+ +Q+ G +P Y+ EG +H+P F A+V+VD +++P S K A+
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 133 AKIALECIS 141
AK+A S
Sbjct: 61 AKLAHNYFS 69
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQS 94
AP P P + +PA A+ + RV + K+RLQE+AQ++G+ P Y +
Sbjct: 6 APTPLPPETANTSPAPIGATAGI---------RVENCYVFKSRLQEYAQKAGLQTPEYHT 56
Query: 95 HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI 144
EG H P F+++V ++ +Y S FS+RKAAEQ A++AL I K I
Sbjct: 57 SKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSI 106
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
Q+T CK++L E+A KMN +P+Y + + L F+ ++ G+ Y G R+KK+AE
Sbjct: 466 QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEI 525
Query: 214 LAARAVIRTLLVTS-GSATILSEIIKSKGK 242
AAR + + S GSA ++ I GK
Sbjct: 526 KAARTALLAIQGQSEGSANGATKYIVVPGK 555
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 157 VFCKSILNEFAVKMNLELPAYST-RQSEALLPVFVSSLVFNGVTYTGEPGRS-KKEAEQL 214
VF KS L E+A K L+ P Y T ++ + PVF S++V N +Y PG S +K AEQ
Sbjct: 35 VF-KSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS 93
Query: 215 AARAVIRTLL 224
AA + ++
Sbjct: 94 AAEVALMEIV 103
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQS 94
AP P P + +PA A+ + RV + K+RLQE+AQ++G+ P Y +
Sbjct: 6 APTPLPPETANTSPAPIGATAGI---------RVENCYVFKSRLQEYAQKAGLQTPEYHT 56
Query: 95 HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI 144
EG H P F+++V ++ +Y S FS+RKAAEQ A++AL I K I
Sbjct: 57 SKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSI 106
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
Q+T CK++L E+A KMN +P+Y + + L F+ ++ G+ Y G R+KK+AE
Sbjct: 466 QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFICTVEIGGIQYIGAAARTKKDAEI 525
Query: 214 LAARAVIRTLLVTS-GSATILSEIIKSKGK 242
AAR + + S GSA ++ I GK
Sbjct: 526 KAARTALLAIQGQSEGSANGATKYIVVPGK 555
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 157 VFCKSILNEFAVKMNLELPAYST-RQSEALLPVFVSSLVFNGVTYTGEPGRS-KKEAEQL 214
VF KS L E+A K L+ P Y T ++ + PVF S++V N +Y PG S +K AEQ
Sbjct: 35 VF-KSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS 93
Query: 215 AARAVIRTLL 224
AA + ++
Sbjct: 94 AAEVALMEIV 103
>gi|357462125|ref|XP_003601344.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490392|gb|AES71595.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 372
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 13/146 (8%)
Query: 79 QEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
Q A+++ + PV+ EG H +++A V +DG ++ SP +F+ K AEQ AK
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF--- 169
Query: 139 CISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQ-SEALLPVFVSSLVFNG 197
+ KDE CP KS+L E + + P Y T Q +P F S++ G
Sbjct: 170 -VGMFQKDEPCP--------SKSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEG 220
Query: 198 VTYTGEPGRSKKEAEQLAARAVIRTL 223
+ + G+ +SK +AE+ AA+ TL
Sbjct: 221 IGFHGKASKSKNKAEEDAAKIAYITL 246
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
MHK++LQE R LP Y + H +G H P F+ SV V+G+T+TS +TF+ A+
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 132 VAKIAL 137
A A
Sbjct: 61 AAMKAF 66
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K+ LQE ++R G P Y++ G H P F ++V V+G+ + + S K AE+D AK
Sbjct: 182 KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGIGFHGKASKSKNK-AEEDAAK 240
Query: 135 IAL----ECISKKIKD 146
IA EC S D
Sbjct: 241 IAYITLKECGSHTYAD 256
>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 41/151 (27%)
Query: 70 EHLMH--KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
E ++H KN+LQ +AQ+ LPVY G HA +F+ +++G TY S F
Sbjct: 171 EGMLHLFKNQLQTYAQKRNFSLPVYSCERMGPPHAIRFKCKFTINGQTYESREYFP---- 226
Query: 128 AEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALL 186
+SK K EGC P Y T +S EA
Sbjct: 227 -----------TLSKAEKREGCG-----------------------FPTYCTEKSGEAHA 252
Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
P F+S++ +GV++TG+ R+KK+AE AA+
Sbjct: 253 PTFISTVEIDGVSFTGKEARTKKQAEMSAAK 283
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K+ LQ + G LP YQ +G H+P F A+V+V+ +++SP+ S K A+ D
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 133 AKIALECIS 141
AK+A + S
Sbjct: 61 AKLAYDHFS 69
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RK
Sbjct: 27 RVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86
Query: 127 AAEQDVAKIALECISKKI 144
AAEQ A++AL I K I
Sbjct: 87 AAEQSAAEVALMEIVKSI 104
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
Q+T CK++L E+A KMN +P+Y +S + L F+ ++ G+ Y G R+KK+AE
Sbjct: 471 QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEI 530
Query: 214 LAARAVIRTLLVTS-GSATILSEIIKSKGK 242
AAR + + S GSA ++ I GK
Sbjct: 531 KAARTALLAIQGQSEGSANGATKYIVVPGK 560
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 157 VFCKSILNEFAVKMNLELPAYST-RQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQL 214
VF KS L E+A K L+ P Y T ++ + PVF S++V N +Y PG ++K AEQ
Sbjct: 33 VF-KSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 215 AARAVIRTLL 224
AA + ++
Sbjct: 92 AAEVALMEIV 101
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RK
Sbjct: 27 RVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86
Query: 127 AAEQDVAKIALECISKKI 144
AAEQ A++AL I K I
Sbjct: 87 AAEQSAAEVALMEIVKSI 104
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 150 PLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKK 209
P Q+T CK++L E+A KMN +P+Y +S + L F+ ++ G+ Y G R+KK
Sbjct: 467 PATVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKK 526
Query: 210 EAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
+AE AAR + + S GSA ++ I GK
Sbjct: 527 DAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 560
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 157 VFCKSILNEFAVKMNLELPAYST-RQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQL 214
VF KS L E+A K L+ P Y T ++ + PVF S++V N +Y PG ++K AEQ
Sbjct: 33 VF-KSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91
Query: 215 AARAVIRTLL 224
AA + ++
Sbjct: 92 AAEVALMEIV 101
>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
Length = 474
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RK
Sbjct: 27 RVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86
Query: 127 AAEQDVAKIALECISKKI 144
AAEQ A++AL I K I
Sbjct: 87 AAEQSAAEVALMEIVKSI 104
>gi|357443947|ref|XP_003592251.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462133|ref|XP_003601348.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481299|gb|AES62502.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490396|gb|AES71599.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 443
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 35/214 (16%)
Query: 65 PNRVPEHLMHKNRL-----QEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSP 119
P++ P+ L +RL Q +A ++ + PV+ EG ++ A+V VDG ++ SP
Sbjct: 132 PSQFPDILSDTDRLNKLQHQNYASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSP 191
Query: 120 NTFSHRKAAEQDVAKI-----ALECISKK----IKDEGCPLINQ----DTVFCKSILNEF 166
+F RK AEQ +I A ++ K + L N+ +T KS+L E
Sbjct: 192 TSFDTRKEAEQAALQIVDMFQARSALAFKPCQTFEKPRSALNNRHMTNETCASKSLLQEL 251
Query: 167 AVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL-- 223
+ +P Y STR +P F S++ GV + G+ SKKEAE AA+ + L
Sbjct: 252 TQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKIAYKALKD 311
Query: 224 ----LVTSGSATIL----------SEIIKSKGKL 243
+ + S++I S+I++SK KL
Sbjct: 312 GGLHMYAAFSSSIKKNQAEQSTDESDIVRSKQKL 345
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 45/206 (21%)
Query: 56 SVTAPVVLTPNRVPEHL----------MHKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPK 104
S T ++L N + H+ M+K+RLQE R LP Y S + +G H P
Sbjct: 6 SFTWFLILHNNLIYVHVITIVVGVKVKMYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPS 65
Query: 105 FRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS----------------KKI---K 145
F+ SV V+G+T+TS + F K A A AL S +K+ K
Sbjct: 66 FKGSVFVNGLTFTSSDIFHSSKEAHNQAAMKALLNFSYPSSSSSMPTNEYGSKEKVGAAK 125
Query: 146 DEGCPLINQ--DTVFCKSILNE-----FAVKMNLELPAYSTRQSEALLP----VFVSSLV 194
+ CP+ +Q D + LN+ +A K NL+ P ++ EA P + +++V
Sbjct: 126 PQKCPVPSQFPDILSDTDRLNKLQHQNYASKNNLDSPVFTI---EAEGPPRDIRYNATVV 182
Query: 195 FNGVTYTG-EPGRSKKEAEQLAARAV 219
+G ++ ++KEAEQ A + V
Sbjct: 183 VDGKSFKSPTSFDTRKEAEQAALQIV 208
>gi|357443935|ref|XP_003592245.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462121|ref|XP_003601342.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481293|gb|AES62496.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490390|gb|AES71593.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 424
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 21/164 (12%)
Query: 59 APVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTS 118
+PV+ R + + K LQ +A+++ + PV+ E ++A+V +D ++ S
Sbjct: 112 SPVI----RTDTNRLSKKHLQNYARKNNLDPPVFTIKTERLH----YKATVVIDEKSFES 163
Query: 119 PNTFSHRKAAEQDVAKIALECISKKI----KDEGCPLINQDTVFCKSILNEFAVKMNLEL 174
P F+ K AEQ AKIAL + + KDE CP KS+L E +
Sbjct: 164 PTFFNSIKEAEQAAAKIALRELPISVDLFQKDESCP--------SKSLLLELTQREGYSK 215
Query: 175 PAYSTRQSEAL-LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
P Y+T +S +L + + S++ G+ + G+ RSKK+A+ AA+
Sbjct: 216 PTYTTIESGSLHMRTYFSTVEVEGLKFHGKASRSKKQADIDAAK 259
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 77/189 (40%), Gaps = 42/189 (22%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M K +LQ+ + LP Y + N+G QH P F ASV V+GVT+ S + F+ K A+
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 133 AKIAL--------ECISKKIKDEGC---------------------------PLINQDT- 156
A A E + I+ +G P+I DT
Sbjct: 61 AMKAFRNFTSPLSEFAIRLIRRDGFSIPTDEYGSKEKVEATKPQESPLPAQSPVIRTDTN 120
Query: 157 VFCKSILNEFAVKMNLELPAYS--TRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQL 214
K L +A K NL+ P ++ T + V + F T+ S KEAEQ
Sbjct: 121 RLSKKHLQNYARKNNLDPPVFTIKTERLHYKATVVIDEKSFESPTFFN----SIKEAEQA 176
Query: 215 AARAVIRTL 223
AA+ +R L
Sbjct: 177 AAKIALREL 185
>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 10/162 (6%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
L +K++LQ +AQ+ LP Y + G HAP FR++V++DG T+ SP + K AE
Sbjct: 112 LPYKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFA 171
Query: 132 VAKIALECISKK--------IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQS 182
A++AL +S++ + C + + K L +A K +LP Y T++
Sbjct: 172 AARVALMSLSQEANPSEQMLVGSASCISLPGIQINHKLQLQIYAQKRGKQLPKYRRTQEG 231
Query: 183 EALLPVFVSSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL 223
+ P+F S++ +G T+ + ++ KE+E AA + +L
Sbjct: 232 PSHAPLFKSTVTIDGQTFESPQYCQTIKESENAAANLALMSL 273
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR---KAAE 129
M K +L + Q+ P P Y +EG H +FRA+V+V+G Y SP+ K A
Sbjct: 27 MFKAQLNQLCQQRRWPAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTAKEAH 86
Query: 130 QDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPV 188
AK A E +S ++ + KS L +A K + +LP+Y T R P+
Sbjct: 87 NLAAKAAFERLSALPPPPPPQ--SETQLPYKSQLQVYAQKRHKDLPSYDTIRNGPPHAPL 144
Query: 189 FVSSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL 223
F S++ +G T+ + + KEAE AAR + +L
Sbjct: 145 FRSTVTIDGRTFESPQDYHTTKEAEFAAARVALMSL 180
>gi|357492169|ref|XP_003616373.1| hypothetical protein MTR_5g079480 [Medicago truncatula]
gi|355517708|gb|AES99331.1| hypothetical protein MTR_5g079480 [Medicago truncatula]
Length = 297
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 84 RSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 143
RS + P + S N G AP +R++V VDG+ + S TF H+K +Q+VA+IALE ++KK
Sbjct: 133 RSNMKHPKFLSCNLGSIQAPSYRSTVMVDGLIFISQLTFFHQKVVDQEVARIALEYLTKK 192
Query: 144 IKDEG 148
I DE
Sbjct: 193 INDEA 197
>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 10/86 (11%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ +P PVY+ EG H F+++V +DGV Y S F +RKAAEQ
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 133 AKIAL----------ECISKKIKDEG 148
A++AL +C+S+ + + G
Sbjct: 78 AEVALRELAKSSELSQCVSQPVHETG 103
>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ +P PVY+ EG H F+++V +DGV Y S F +RKAAEQ
Sbjct: 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 133 AKIALECISK 142
A++AL ++K
Sbjct: 64 AEVALRELAK 73
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RKAAEQ
Sbjct: 1268 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 1327
Query: 133 AKIALECISKKI 144
A++AL I K I
Sbjct: 1328 AEVALMEIVKSI 1339
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
Q+T CK++L E+A KMN +P+Y +S + L F+ ++ G+ Y G R+KK+AE
Sbjct: 1700 QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEI 1759
Query: 214 LAARAVIRTLLVTS-GSATILSEIIKSKGK 242
AAR + + S GSA ++ I GK
Sbjct: 1760 KAARTALLAIQGQSEGSANGATKYIVVPGK 1789
>gi|297726835|ref|NP_001175781.1| Os09g0331900 [Oryza sativa Japonica Group]
gi|255678794|dbj|BAH94509.1| Os09g0331900 [Oryza sativa Japonica Group]
Length = 133
Score = 60.1 bits (144), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 123 SHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS 182
SH + AEQ+ + E E LI+Q+ C +LN+F+++ N+ P+Y T +
Sbjct: 31 SHHREAEQNDSFTRREYTCADFI-EALRLIDQEAFKCSIVLNDFSMRANITEPSYRTVKL 89
Query: 183 EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 224
+ + FVSS++ G TYTGE + +A++ AAR I+++L
Sbjct: 90 DGICSTFVSSVLAGGYTYTGEVATTDGDAKENAARVAIKSIL 131
>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 46/154 (29%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
L +K+ LQ +A+ LP Y + EG HAP F+A+
Sbjct: 159 LKYKSHLQNYARWKNCDLPTYYNTREGPSHAPCFKAT----------------------- 195
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL-LPVFV 190
D+ F K+ L E A + +L +P Y +S AL +P F
Sbjct: 196 ----------------------DDSGFYKNALQELAQREDLSMPVYKIIKSGALHMPTFF 233
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 224
S + G + G+ G+SKKEAE +ARA L+
Sbjct: 234 SYVEIEGEKFYGKAGKSKKEAELKSARAAYTVLM 267
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M K +LQE + LP Y + +G H P F+ASV V+G+++ S + K A D
Sbjct: 1 MDKTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDA 60
Query: 133 AKIAL 137
AK+A
Sbjct: 61 AKMAF 65
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+KN LQE AQR + +PVY+ G H P F + V ++G + S +K AE
Sbjct: 200 FYKNALQELAQREDLSMPVYKIIKSGALHMPTFFSYVEIEGEKFYGKAGKS-KKEAELKS 258
Query: 133 AKIALECISKK 143
A+ A + ++
Sbjct: 259 ARAAYTVLMER 269
>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
Length = 125
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 69 PEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR--K 126
P H +K++LQE+ Q++ LP+Y + +G H KF+++V VDG ++S TF HR K
Sbjct: 34 PPHCNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS--TFCHRRVK 91
Query: 127 AAEQDVAKIALECISKKIKDE 147
AEQD AK+A + + ++ + E
Sbjct: 92 DAEQDAAKVAYDTLLERKETE 112
>gi|357443939|ref|XP_003592247.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
gi|355481295|gb|AES62498.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
Length = 257
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 25/145 (17%)
Query: 79 QEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
Q A+++ + PV+ EG H +++A V +DG ++ SP +F+ K AEQ AK
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF--- 169
Query: 139 CISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGV 198
+ KDE CP KS+L E + + P Y T Q E G+
Sbjct: 170 -VGMFQKDEPCP--------SKSLLQELSEREGFSKPTYKTTQIE-------------GI 207
Query: 199 TYTGEPGRSKKEAEQLAARAVIRTL 223
+ G+ +SK +AE+ AA+ TL
Sbjct: 208 GFHGKASKSKNKAEEDAAKIAYITL 232
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
MHK++LQE R LP Y + H +G H P F+ SV V+G+T+TS +TF+ A+
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 132 VAKIAL 137
A A
Sbjct: 61 AAMKAF 66
>gi|356577458|ref|XP_003556842.1| PREDICTED: probable sugar phosphate/phosphate translocator
At5g05820-like [Glycine max]
Length = 293
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y S EG HAP+F+A V+ +G + +P+ S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 133 AKIALECISKK 143
A++ L ++ +
Sbjct: 61 AEVTLNSLTHR 71
>gi|414888358|tpg|DAA64372.1| TPA: hypothetical protein ZEAMMB73_304518 [Zea mays]
Length = 246
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 26/159 (16%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
+K++LQ +AQ+ G LP Y+ G AP F++ V++DG T+ SP K AE A
Sbjct: 93 YKSQLQIYAQKRGKLLPSYRLIRVGSLGAPLFKSEVTIDGQTFESPEYCHTIKEAETVAA 152
Query: 134 KIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSL 193
K+AL + + E P + +L + L++ YS FVS++
Sbjct: 153 KVALMSLPQ----EANP--------TQQLL------VGLDVSNYSAG--------FVSTV 186
Query: 194 VFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATI 232
GVT+ G+ G +KK+AE AA++ L +G ++
Sbjct: 187 EIQGVTFHGKRGNTKKQAEMNAAKSAFEHLKTDAGLVSL 225
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K+RLQE Q+ +Y+ EG HAP F A+V V+G ++S + K+ ++
Sbjct: 1 MYKSRLQELCQKRRWASSLYEPTREGPAHAPLFHATVIVNGERFSSRD--EGEKSLKEAY 58
Query: 133 AKIALECISKKI--------KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEA 184
A+ I P ++ + KS L +A K LP+Y + +
Sbjct: 59 NLTAMAAFDNLIPLPAVALAPAAPAPPPSETQLPYKSQLQIYAQKRGKLLPSYRLIRVGS 118
Query: 185 L-LPVFVSSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL 223
L P+F S + +G T+ E + KEAE +AA+ + +L
Sbjct: 119 LGAPLFKSEVTIDGQTFESPEYCHTIKEAETVAAKVALMSL 159
>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
Length = 118
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ+ GI Y + EG H P F+++V V+ Y S F RK
Sbjct: 26 RVENCYVFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRK 85
Query: 127 AAEQDVAKIAL 137
AAEQ A++AL
Sbjct: 86 AAEQSAAEVAL 96
>gi|291225693|ref|XP_002732833.1| PREDICTED: sortilin-related receptor containing LDLR class A repeats
preproprotein-like [Saccoglossus kowalevskii]
Length = 2820
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 255 YSTQKI---ATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITE 311
Y+T I AT T+ IP +++G+H P ++G+H+ IP G+H T I
Sbjct: 2217 YATSGIPATATGVHATSGIPATATGVHATSGIPATAIGVHATSAIPATEIGVHATSGIPA 2276
Query: 312 ASTGMHPTSAAIEVSTGMHSTAADSETSTGMN 343
+TG+H TSA +TG+H+T+ T+TG++
Sbjct: 2277 TATGVHATSAIPATATGVHATSGIPTTATGIH 2308
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 261 ATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTS 320
AT T+ IP ++ G+H P +G+H+ IP G+H T AI +TG+H TS
Sbjct: 2239 ATGVHATSGIPATAIGVHATSAIPATEIGVHATSGIPATATGVHATSAIPATATGVHATS 2298
Query: 321 AAIEVSTGMHSTAADSETSTGMN 343
+TG+H+T T+ G++
Sbjct: 2299 GIPTTATGIHATGRIPATAMGIH 2321
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 261 ATSYVPTTA--------IPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEA 312
ATS +P TA IP +++GIH P + G+++ IP G+H T I
Sbjct: 2179 ATSGIPATATGVHVTGGIPATATGIHATNGVPATATGVYATSGIPATATGVHATSGIPAT 2238
Query: 313 STGMHPTSAAIEVSTGMHSTAADSETSTGMN 343
+TG+H TS + G+H+T+A T G++
Sbjct: 2239 ATGVHATSGIPATAIGVHATSAIPATEIGVH 2269
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 261 ATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTS 320
AT T +P +++G++ P + G+H+ IP G+H T I + G+H TS
Sbjct: 2200 ATGIHATNGVPATATGVYATSGIPATATGVHATSGIPATATGVHATSGIPATAIGVHATS 2259
Query: 321 AAIEVSTGMHSTAADSETSTGMN 343
A G+H+T+ T+TG++
Sbjct: 2260 AIPATEIGVHATSGIPATATGVH 2282
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 267 TTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVS 326
T+AIP + G+H P + G+H+ IP G+H T I +TG+H T +
Sbjct: 2258 TSAIPATEIGVHATSGIPATATGVHATSAIPATATGVHATSGIPTTATGIHATGRIPATA 2317
Query: 327 TGMHSTAA 334
G+H+T+
Sbjct: 2318 MGIHATSG 2325
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 272 KSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHS 331
K++SGI P + G+H IP GIH T + +TG++ TS +TG+H+
Sbjct: 2178 KATSGI------PATATGVHVTGGIPATATGIHATNGVPATATGVYATSGIPATATGVHA 2231
Query: 332 TAADSETSTGMN 343
T+ T+TG++
Sbjct: 2232 TSGIPATATGVH 2243
Score = 37.7 bits (86), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 261 ATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTS 320
A S +PTTA + +G H P G H+I +P A ++ T I G+H TS
Sbjct: 2348 ANSGIPTTATGEPETGAHSTSGIPVTETGAHTITGVPAAGTRVYATNRIIATEIGVHATS 2407
Query: 321 AAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIPFVP 369
G H+T+ T+T +P K P+ E P P VL + +P
Sbjct: 2408 GIPVTEVGEHATSRVPTTATA-GVP--ETKFPETEKPL-PTVLSVTQLP 2452
>gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis]
gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis]
Length = 949
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 79/184 (42%), Gaps = 46/184 (25%)
Query: 74 HKNRLQEHAQRSGIPLPVY--QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
+KN LQE AQ S LP Y + N GF A V+ +GV Y S S +KAAEQ+
Sbjct: 141 YKNILQEFAQGSAKLLPSYTVDTTNSGF------IAEVNFEGVRYKSKIAHSTKKAAEQN 194
Query: 132 VAKIALE------------CISKKIKD-----------EGC---------PLINQDTVFC 159
A+ AL+ +S+K + GC P IN +
Sbjct: 195 AAESALQALGLVRDSPSETVVSEKFESVLKNTPAKNDFTGCSKDQLYLSSPAIN---ISY 251
Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
KS L E V+ P+Y T + V F G + TG+P +KK +EQLAAR
Sbjct: 252 KSYLQEHVVQRGWRGPSYMTTYHQGGAQTVVQ---FCGKSLTGKPASTKKLSEQLAAREA 308
Query: 220 IRTL 223
+ L
Sbjct: 309 LVNL 312
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 160 KSILNEFAVKMNLELPAYSTRQSE----ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLA 215
KS+L E+ KM ++ P+Y T Q + L FVS+++ G +TG +K AEQ A
Sbjct: 21 KSLLQEYCQKMKIDYPSYRTSQCDDGTSKYLGHFVSNVLAVGQNFTGGYCSKRKAAEQDA 80
Query: 216 ARAVIRTLLVTSGSAT 231
A+ ++ + T S+T
Sbjct: 81 AKQALKNIQQTLISST 96
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 153 NQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEA 211
Q+T CK++L E+A KMN +P+Y T+Q+ P F+ S+ G+ Y G R+KK A
Sbjct: 87 GQETGLCKNLLQEYAQKMNYAIPSYICTKQASG--P-FICSVEIGGILYIGAAARTKKGA 143
Query: 212 EQLAARAVIRTLLVTSGSATILSEIIKS 239
E AAR LL G + I++ +K+
Sbjct: 144 EIKAART---ALLAIQGQSEIVANGVKN 168
>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
Length = 506
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++KN LQE AQR G PLP Y + G H P F +V + G+T+T + ++K AE++
Sbjct: 79 VYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKNA 137
Query: 133 AKIALECISKKIKDEG 148
A A + + ++ E
Sbjct: 138 ASAAWSSLRQLVRQEA 153
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 151 LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFVSSLVFNGVTYTGEPGRSKK 209
L+++ V+ K++L E A ++ LP+Y+T R LPVF ++ G+T+TG+P ++KK
Sbjct: 73 LLDETGVY-KNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKK 131
Query: 210 EAEQLAARAVIRTL 223
+AE+ AA A +L
Sbjct: 132 QAEKNAASAAWSSL 145
>gi|357501287|ref|XP_003620932.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
gi|355495947|gb|AES77150.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
Length = 75
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+ N+LQE Q++ PLP YQ+ +EG H P F ++V+V +++TSP S KA+++ V
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 133 AKIAL 137
A +A
Sbjct: 61 AMVAF 65
>gi|156401537|ref|XP_001639347.1| predicted protein [Nematostella vectensis]
gi|156226475|gb|EDO47284.1| predicted protein [Nematostella vectensis]
Length = 880
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 43/241 (17%)
Query: 11 AVLSSLPQPQLSDPCPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPE 70
+ + S QP+ T+A Q + AP++ ++ +++ P+ N
Sbjct: 525 SFVQSNSQPKPKPAWLTQAPTQQTSGLVAPIKPKLINQPITKGCENIKVPIPGDDN---- 580
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQ 130
+ KN LQE AQ+ GIP+P Y S + ++V + + S +K +EQ
Sbjct: 581 FISFKNSLQEFAQKKGIPVPRYFSK----KAQIGMMSTVVISDHKFHSTGLHKDKKQSEQ 636
Query: 131 DVAKIAL---------------------------ECISKKIKDEGCPLINQDTVFCKSIL 163
+ A AL E ++KK+K E P KS L
Sbjct: 637 NAAWFALKKLGIIPVETIFTPLRVAAKRPASTLPETVAKKLKGEDLP----KAPSYKSQL 692
Query: 164 NEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRT 222
NEF K +L +P Y T Q EA +V ++++N Y + P ++KK AEQ A+ V+ T
Sbjct: 693 NEFCQKFHLAIPQYRT-QREAR--GYVCTMLYNKKVYHSTVPLKNKKAAEQNVAQYVLST 749
Query: 223 L 223
+
Sbjct: 750 V 750
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
+ +KN+LQE+ ++ P+Y S Q KF + VDG T+ + +K +EQ
Sbjct: 808 ISYKNQLQEYCDKNKKGAPIYDSKKVELQVDGKFVCDLLVDGFTFRAKGC-QTKKGSEQS 866
Query: 132 VAKIALE 138
A+IAL+
Sbjct: 867 AARIALQ 873
>gi|449489595|ref|XP_004158359.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus]
Length = 307
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M K +LQE R LP Y +G H P+F A+V+VDG + SP K A+ D
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 133 AKIALECIS 141
AK+A + S
Sbjct: 61 AKLAFDFFS 69
>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
Length = 198
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 10/153 (6%)
Query: 75 KNRLQEHAQR-SGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K +L +AQ+ S +P P+Y+ EG HAP+F A V++DG T+ P ++ + A
Sbjct: 37 KTQLSVYAQKLSKVP-PLYKHIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 95
Query: 134 KIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTR-QSEALLPVFV 190
+ I ++ P ++ K+ + E A K + LP Y+T ++ +
Sbjct: 96 AEVALDLLPPIPPQEYTIPSLSY-----KNFIQEIAQKEGISLPVYNTVPTNKENSTAYK 150
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
SS+ G + GEPG SKK+AE AA+ L
Sbjct: 151 SSVQIKGEIFEGEPGTSKKQAEMNAAKIAYHHL 183
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTS-PNTFSHRKAAEQ 130
L +KN +QE AQ+ GI LPVY + +++ +++SV + G + P T +K AE
Sbjct: 116 LSYKNFIQEIAQKEGISLPVYNTVPTNKENSTAYKSSVQIKGEIFEGEPGT--SKKQAEM 173
Query: 131 DVAKIAL 137
+ AKIA
Sbjct: 174 NAAKIAY 180
>gi|357131055|ref|XP_003567159.1| PREDICTED: double-stranded RNA-binding protein 1-like [Brachypodium
distachyon]
Length = 608
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH---RKAAE 129
M K+RL E + P Y EG H PKFRA+V V+G + SP + K A+
Sbjct: 1 MFKSRLNELCHQQRWAPPAYTHQLEGPAHTPKFRATVVVNGSEFHSPEEEAWPTTAKEAQ 60
Query: 130 QDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPV 188
AK A E +S + P V KS L +A K ++P Y S R +
Sbjct: 61 SLAAKAAFEHLS-SLPPPPPPPQPGTQVDYKSQLQIYAQKRRKDIPFYHSIRSGPPHATL 119
Query: 189 FVSSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL 223
F +++ +G T+ + + KEAE AAR + +L
Sbjct: 120 FKTTVTIDGQTFESPQEYHTIKEAEFAAARVALMSL 155
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
+K++LQ +AQ+ +P Y S G HA F+ +V++DG T+ SP + K AE A
Sbjct: 89 YKSQLQIYAQKRRKDIPFYHSIRSGPPHATLFKTTVTIDGQTFESPQEYHTIKEAEFAAA 148
Query: 134 KIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYS-TRQSEALLPVFVSS 192
++AL + ++ L+ T+ + A K L Y+ T +
Sbjct: 149 RVALMSLPQEANPPQQLLVQ--TISHNRARQDLAEKEGSPLDVYNATLDDSNHFSISKEK 206
Query: 193 LVFNGVTYTGEPGRSKKEAEQLAARAVIR 221
+ G ++ PG +KK++E +A +
Sbjct: 207 VETQGRSFQAGPGHTKKQSEMIATELAFQ 235
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 46/152 (30%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++K +LQ +AQ+ +PLP+Y + G H +F++
Sbjct: 182 LYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKS------------------------- 216
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVS 191
KD D K++L E A K +LP YST +S + +P F+S
Sbjct: 217 ------------KD--------DYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLS 256
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G T+ G+ ++KK AE AA+A L
Sbjct: 257 TVEIEGETFVGQKAKTKKLAEMNAAKAAYTHL 288
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
++ ++KN LQE A++ G LPVY + G H P F ++V ++G T+ + +K AE
Sbjct: 219 DYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKT-KKLAE 277
Query: 130 QDVAKIALECISKK 143
+ AK A + ++
Sbjct: 278 MNAAKAAYTHLKER 291
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
E M+K RLQE R P Y + +G H P F A+VSV G+++++ + K A+
Sbjct: 7 EREMNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQ 66
Query: 130 QDVAKIALECIS 141
+ A +A++ ++
Sbjct: 67 SNAAGLAIQYLT 78
>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
Length = 162
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 65 PNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF 122
P V +HL +KN LQ +AQ+ G+PLP+Y +G HA F+ V++DG +Y + F
Sbjct: 74 PPDVQQHL-YKNLLQSYAQKRGLPLPMYSCERQGPPHASLFKCKVTIDGKSYECLDFF 130
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K +LQE + LP Y + G H P F A+V V+G +++S + K A+ +
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFVS 191
AK+A + S P Q ++ K++L +A K L LP YS RQ +F
Sbjct: 61 AKLAFDHFSSV----SLPPDVQQHLY-KNLLQSYAQKRGLPLPMYSCERQGPPHASLFKC 115
Query: 192 SLVFNGVTY 200
+ +G +Y
Sbjct: 116 KVTIDGKSY 124
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV--FVSSLVFNGVTYTGEPGRSKKEA 211
+T CK++L E+A KMN +P Y ++ E L V F ++ G+ YTG R+KK+A
Sbjct: 4 HETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDA 63
Query: 212 EQLAARAVI 220
E A R +
Sbjct: 64 EISAGRTAL 72
>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
Length = 243
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K +L +AQ+ G P+Y+ EG HAP+F A V++DG T+ P ++ + A
Sbjct: 82 KTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAAA 141
Query: 135 IALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTR-QSEALLPVFVS 191
+ I ++ P ++ K+ + E A K + LP Y+T ++ + S
Sbjct: 142 EVALDLLPPIPPQESTIPSLSY-----KNFIQEIAQKEGILLPVYNTVPTNKEYSTAYKS 196
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
S+ + GEP SKK+AE AA+ L
Sbjct: 197 SVQIKCEIFEGEPRTSKKQAEMNAAKIAYHHL 228
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 61 VVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPN 120
VV ++ ++KN LQE A++ G LPVY + G H P F ++V ++G T+
Sbjct: 226 VVKAWGGFDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQK 285
Query: 121 TFSHRKAAEQDVAKIA 136
+ +K AE + AK A
Sbjct: 286 AKT-KKLAEMNAAKAA 300
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 155 DTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
D K++L E A K +LP YST +S + +P F+S++ G T+ G+ ++KK AE
Sbjct: 235 DYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEM 294
Query: 214 LAARA 218
AA+A
Sbjct: 295 NAAKA 299
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
E M+K RLQE R P Y + +G H P F A+VSV G+++++ + K A+
Sbjct: 7 EREMNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQ 66
Query: 130 QDVAKIALECIS 141
+ A +A++ ++
Sbjct: 67 SNAAGLAIQYLT 78
>gi|357501283|ref|XP_003620930.1| DsRNA-binding protein [Medicago truncatula]
gi|355495945|gb|AES77148.1| DsRNA-binding protein [Medicago truncatula]
Length = 105
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K +LQE Q++ PLP YQ+ +EG H P F ++V+V +++TSP S KA+++ A
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 135 IAL 137
+A
Sbjct: 93 VAF 95
>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 280
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
+ +KN LQE AQ+ G LP Y + G H P F ++V V G +T T + +K AE
Sbjct: 3 DEFAYKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQTRT-KKQAE 61
Query: 130 QDVAKIALECISKK 143
+ AK+A + + ++
Sbjct: 62 FNAAKVAYKALKQR 75
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 155 DTVFCKSILNEFAVKMNLELPAYSTRQ-SEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
D K++L E A K LP+YST E+ P F S++ G +TG+ R+KK+AE
Sbjct: 3 DEFAYKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQTRTKKQAEF 62
Query: 214 LAARAVIRTL 223
AA+ + L
Sbjct: 63 NAAKVAYKAL 72
>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 47.8 bits (112), Expect = 0.010, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 158 FCKSILNEFAVKMNLELPAYSTRQSEALLPV--FVSSLVFNGVTYTGEPGRSKKEAEQLA 215
CK++L E+A KMN +P Y ++ E L V F ++ G+ YTG R+KK+AE A
Sbjct: 5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 64
Query: 216 ARAVI 220
R +
Sbjct: 65 GRTAL 69
Score = 38.1 bits (87), Expect = 7.6, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
H + KN LQE+AQ+ +P+YQ E +F +V + G+ YT T + +K AE
Sbjct: 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT-KKDAE 61
Query: 130 QDVAKIALECI 140
+ AL I
Sbjct: 62 ISAGRTALLAI 72
>gi|351724731|ref|NP_001235276.1| uncharacterized protein LOC100306453 [Glycine max]
gi|255628583|gb|ACU14636.1| unknown [Glycine max]
Length = 162
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG 113
++KN+LQ + Q++ + LPVY S EG HA +F+ V+VDG
Sbjct: 119 LYKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVDG 159
>gi|224143640|ref|XP_002336063.1| predicted protein [Populus trichocarpa]
gi|222869864|gb|EEF06995.1| predicted protein [Populus trichocarpa]
Length = 155
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K++LQ Q+ G LP YQ +G H P F A+V+V+ +++SP+ S K A+ D
Sbjct: 1 MYKSKLQAVCQQRGWELPTYQVTKQGKDHNPLFSATVTVNATSFSSPSPSSSSKTAQSDA 60
Query: 133 AKIAL 137
AK+A
Sbjct: 61 AKLAF 65
>gi|423262923|ref|YP_007012948.1| lipoprotein VlpE [Mycoplasma hyorhinis SK76]
gi|422035460|gb|AFX74302.1| lipoprotein VlpE [Mycoplasma hyorhinis SK76]
Length = 243
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 41/93 (44%)
Query: 251 KESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAIT 310
KESN S + + P +S G H P+ P S G HS P+ P + G H P+
Sbjct: 148 KESNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNP 207
Query: 311 EASTGMHPTSAAIEVSTGMHSTAADSETSTGMN 343
S G H + S G HS ++ TS G N
Sbjct: 208 TTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQN 240
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 266 PTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEV 325
PTT+ PK S+ P+ P S G HS P+ P + G H P+ S G H +
Sbjct: 142 PTTSDPKESN-----PSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTT 196
Query: 326 STGMHSTAADSETSTGM 342
S G HS ++ TS G
Sbjct: 197 SDGQHSNPSNPTTSDGQ 213
>gi|378835720|ref|YP_005204996.1| lipoprotein VlpE [Mycoplasma hyorhinis GDL-1]
gi|2497729|sp|Q49537.1|VLPE_MYCHR RecName: Full=Variant surface antigen E; AltName: Full=VlpE
prolipoprotein; Flags: Precursor
gi|1039437|gb|AAC45471.1| VlpE prolipoprotein [Mycoplasma hyorhinis]
gi|367460505|gb|AEX14028.1| lipoprotein VlpE [Mycoplasma hyorhinis GDL-1]
gi|1583723|prf||2121355B Vlp surface protein
Length = 243
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 41/93 (44%)
Query: 251 KESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAIT 310
KESN S + + P +S G H P+ P S G HS P+ P + G H P+
Sbjct: 148 KESNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNP 207
Query: 311 EASTGMHPTSAAIEVSTGMHSTAADSETSTGMN 343
S G H + S G HS ++ TS G N
Sbjct: 208 TTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQN 240
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 266 PTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEV 325
PTT+ PK S+ P+ P S G HS P+ P + G H P+ S G H +
Sbjct: 142 PTTSDPKESN-----PSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTT 196
Query: 326 STGMHSTAADSETSTGM 342
S G HS ++ TS G
Sbjct: 197 SDGQHSNPSNPTTSDGQ 213
>gi|352085714|ref|ZP_08953305.1| ribonuclease III [Rhodanobacter sp. 2APBS1]
gi|351681655|gb|EHA64779.1| ribonuclease III [Rhodanobacter sp. 2APBS1]
Length = 219
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 75 KNRLQEHAQRSGIPLPVYQ---SHNEGFQHAPKFRASVSVDG-VTYTSPNTFSHRKAAEQ 130
K RLQE Q G+PLP Y+ SH E HA F S S+ + +T+ R+AAEQ
Sbjct: 145 KTRLQEWLQAKGLPLPHYELVASHGE--DHAKTFEVSCSIGEPIAFTAEAHGGSRRAAEQ 202
Query: 131 DVAKIALECISKKIKD 146
D A+ L + ++ +D
Sbjct: 203 DAAEAVLNQLLEQQRD 218
>gi|449672502|ref|XP_002169974.2| PREDICTED: uncharacterized protein LOC100206939 [Hydra
magnipapillata]
Length = 437
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 37/189 (19%)
Query: 60 PVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSP 119
PV+ P + +KN LQE+ Q+S +P P Y+ G + + VT+ +
Sbjct: 131 PVIYLPG-TNKFCSYKNSLQEYCQKSRLPTPSYKVVLSG--------PGMYIGNVTFNNT 181
Query: 120 ---NTFSHR--KAAEQDVAKIALECIS--------------KKIKDEGCPLINQ--DTVF 158
T ++R K AE + A AL+ + K+ D P ++
Sbjct: 182 LVHGTVAYRIIKEAENNAAFEALKQLGYLHENSIYIPIAGVKRSNDTQDPWYSKKPKPAL 241
Query: 159 C---KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTG-EPGRSKKEAEQL 214
C KS LNE A K +L P Y T S ++S++VFNG + G P KK+AEQ
Sbjct: 242 CSSFKSKLNELAQKRHLGTPTYQTIYSAG---GYLSTVVFNGREFKGMSPCMKKKDAEQN 298
Query: 215 AARAVIRTL 223
AA L
Sbjct: 299 AAFVAYNVL 307
>gi|295111283|emb|CBL28033.1| ribonuclease III, bacterial [Synergistetes bacterium SGP1]
Length = 251
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K+RLQ Q IPLP Y+ + G HAP FR + V+GV +T+ S RK AE D A
Sbjct: 180 KSRLQTWLQARRIPLPTYELVSVTGPSHAPSFRVRLRVNGVEHTACG--STRKGAESDAA 237
Query: 134 KIALE 138
+ LE
Sbjct: 238 ERVLE 242
>gi|358348579|ref|XP_003638322.1| Ribonuclease, partial [Medicago truncatula]
gi|355504257|gb|AES85460.1| Ribonuclease, partial [Medicago truncatula]
Length = 160
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K+ LQE QR +P Y+S G H P F ++V V+GV + + S +K AE D AK
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKAS-SSKKEAEYDAAK 64
Query: 135 IALECISKKIKDEGCPL 151
IA K +KD G +
Sbjct: 65 IAY----KALKDGGLHM 77
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 155 DTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
+T KS+L E + +P Y STR +P F S++ GV + G+ SKKEAE
Sbjct: 1 ETCASKSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEY 60
Query: 214 LAARAVIRTL------LVTSGSATIL----------SEIIKSKGKL 243
AA+ + L + + S++I S+I++SK KL
Sbjct: 61 DAAKIAYKALKDGGLHMYAAFSSSIKKNQAEQSTDESDIVRSKQKL 106
>gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa]
gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa]
Length = 196
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K+ LQ Q+ G LP YQ +G H+P F A+V+V+ +++SP+ S K A+ +
Sbjct: 1 MYKSNLQAVCQQRGWELPTYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60
Query: 133 AKIALECIS 141
AK+A + S
Sbjct: 61 AKLAYDHFS 69
>gi|313679612|ref|YP_004057351.1| double-stranded RNA binding domain-containing protein
[Oceanithermus profundus DSM 14977]
gi|313152327|gb|ADR36178.1| double-stranded RNA binding domain protein [Oceanithermus profundus
DSM 14977]
Length = 165
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 160 KSILNEFAVKMNLELPAYSTRQSEALL-PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARA 218
KS LN + NL LP + TR + P+F+S + NG GRSK+EAE++AA
Sbjct: 5 KSALNAYCQSKNLPLPKFETRGTGTEDDPLFISDVSLNGELLATGQGRSKREAEKVAAEL 64
Query: 219 VIRTLLVTSG 228
+ L T G
Sbjct: 65 ALELLRRTHG 74
>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
Length = 83
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+K++LQ+ +Q+ G +P + EG +H+P F A+V+VD +++P S K A+
Sbjct: 1 MYKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60
Query: 133 AKIA 136
AK A
Sbjct: 61 AKQA 64
>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
Length = 1665
Score = 43.9 bits (102), Expect = 0.17, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 141 SKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTY 200
S ++KD+G P DT K IL + +P Y TR S + F+S +V G +
Sbjct: 937 SAELKDKGTP----DT---KGILQTLVQRAGFAVPTYQTRSSGSQ---FISCVVVRGKKF 986
Query: 201 TGEPGRSKKEAEQ 213
GEP SKK+AE+
Sbjct: 987 IGEPAESKKQAEK 999
>gi|389774795|ref|ZP_10192914.1| ribonuclease III [Rhodanobacter spathiphylli B39]
gi|388438394|gb|EIL95149.1| ribonuclease III [Rhodanobacter spathiphylli B39]
Length = 219
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 16/72 (22%)
Query: 75 KNRLQEHAQRSGIPLPVYQ---SHNEGFQHAPKFRASVSVDGVTYTSPNTF------SHR 125
K RLQE Q G+PLP Y+ SH E HA F S ++ T P F +R
Sbjct: 145 KTRLQEWLQAKGLPLPQYELLASHGE--DHAKTFDVSCAI-----TEPMAFVAEAHGGNR 197
Query: 126 KAAEQDVAKIAL 137
+AAEQD A++ L
Sbjct: 198 RAAEQDAAELVL 209
>gi|406945190|gb|EKD76766.1| hypothetical protein ACD_42C00622G0001, partial [uncultured
bacterium]
Length = 130
Score = 43.5 bits (101), Expect = 0.19, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K LQE Q +PLP+Y+ G H +F + V+G+ + + + R+ AEQ AK
Sbjct: 63 KTTLQEWMQARQMPLPLYECTVTGDAHEQEFTVTCRVEGLAFETIGVSTSRRKAEQIAAK 122
Query: 135 IALECISK 142
+ L I+K
Sbjct: 123 LFLAKINK 130
>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
Length = 287
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 159 CKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
K+ L E + L +P Y + L F + +V G Y G GRSKKEAEQ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGAGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAE 227
Query: 218 AVIRTL 223
+ RTL
Sbjct: 228 SAWRTL 233
>gi|260817370|ref|XP_002603560.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
gi|229288879|gb|EEN59571.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
Length = 1211
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGV-TYTSPNTFSHRKAAEQDV 132
+K LQ+H Q+ + LP + +N+ F ++V + + + +K +EQ+
Sbjct: 1062 YKAILQQHVQKQRLQLPPPK-YNDSITEEKTFLSTVRFETAGAFLTTEVAPSKKDSEQNA 1120
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMN-LELPAYSTRQSEALLPVFVS 191
AK ++ + + +E K +L ++A+K++ ++P Y T SE VS
Sbjct: 1121 AKSVIDLLEHRSDNERN---------YKGVLQQYAIKLDSADVPKYQTYSSEGGFKTVVS 1171
Query: 192 SLVFN---GVTYTGEPGRSKKEAEQLAARAVIRTLLV 225
T E SKKEA+Q AAR + L +
Sbjct: 1172 CRAITKTASFEVTSEACNSKKEAQQRAARRAVELLDI 1208
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 152 INQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFN--GVTYTGEPGRSKK 209
I +D K++L K L P Y T Q E VF S++ F G T EP + KK
Sbjct: 554 IPEDNTDYKTVLKGHVKKQKLPAPFYKT-QPEG--DVFKSTVTFQTRGAYQTTEPAKGKK 610
Query: 210 EAEQLAARAVIRTLLVT 226
EAEQ AA+ V+R L ++
Sbjct: 611 EAEQNAAKEVVRMLGIS 627
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 152 INQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFN--GVTYTGEPGRSKK 209
+++D+V K IL + L P Y + E +S++ F G T EP +SKK
Sbjct: 803 VSKDSVPYKDILQKHVQDQKLPSPRYKDVKGEENT---LSTVSFKTRGAYQTKEPAKSKK 859
Query: 210 EAEQLAARAVIRTLLVTSGSA 230
EAEQ AA+AV+ L V + A
Sbjct: 860 EAEQNAAKAVLEMLKVKARDA 880
>gi|441432182|ref|YP_007354224.1| DSRM[cd00048], Double-stranded RNA binding motif-containing protein
[Acanthamoeba polyphaga moumouvirus]
gi|440383262|gb|AGC01788.1| DSRM[cd00048], Double-stranded RNA binding motif-containing protein
[Acanthamoeba polyphaga moumouvirus]
Length = 228
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV---------DGVTYTSPNTFSHR 125
KN+LQE+ Q++ +PLP+Y S + G H K+ ++++V G Y + T S
Sbjct: 4 KNKLQEYFQKNKLPLPIYSSTSIGAAHEKKWTSNITVIINNKEYTLIGDKYYNSKTESQL 63
Query: 126 KAAEQDVAKIALECISKKIKD 146
K AEQ + I + S KI++
Sbjct: 64 KVAEQMLDHINNQNKSNKIEN 84
>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|401679475|ref|ZP_10811402.1| ribonuclease III [Veillonella sp. ACP1]
gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|400219409|gb|EJO50277.1| ribonuclease III [Veillonella sp. ACP1]
Length = 247
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE QR G VY +E G HA F VS+DG+TY T +K AEQ
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITY-EAGTGKSKKIAEQHA 235
Query: 133 AKIALE 138
A++ LE
Sbjct: 236 AQLTLE 241
>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 247
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE QR G VY +E G HA F VS+DG+TY T +K AEQ
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITY-EAGTGKSKKIAEQHA 235
Query: 133 AKIALE 138
A++ LE
Sbjct: 236 AQLTLE 241
>gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa]
gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa]
Length = 61
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 82 AQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIAL 137
AQR G LP Y + G HAP F ++V +DGV +T + +K AE AK A
Sbjct: 2 AQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVIFTGKEART-KKQAEMSAAKTAY 56
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 174 LPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
LP Y T +S EA P F+S++ +GV +TG+ R+KK+AE AA+
Sbjct: 9 LPTYFTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAK 53
>gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospora sp. L5]
gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
Length = 267
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 159 CKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
K+ L E + L +P Y + L F + +V G Y G GRSKKEAEQ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 218 AVIRTL 223
+ RTL
Sbjct: 228 SAWRTL 233
>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
Length = 267
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 159 CKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
K+ L E + L +P Y + L F + +V G Y G GRSKKEAEQ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 218 AVIRTL 223
+ RTL
Sbjct: 228 SAWRTL 233
>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 760
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
KN LQE+ Q++ + LP Y HA KF V V G Y S ++K AE+ A
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSL-WMDNKKDAEKHAAT 66
Query: 135 IALECISK 142
+AL +SK
Sbjct: 67 VALVELSK 74
>gi|429759937|ref|ZP_19292431.1| ribonuclease III [Veillonella atypica KON]
gi|429178809|gb|EKY20075.1| ribonuclease III [Veillonella atypica KON]
Length = 247
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE QR G VY +E G HA F VS+DG+TY T +K AEQ
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITY-EAGTGKSKKIAEQHA 235
Query: 133 AKIALE 138
A++ LE
Sbjct: 236 AQLTLE 241
>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
Length = 245
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE+ QR G VY+ +E G HA F V ++GVTY + + S +K AEQ
Sbjct: 176 YKTLLQEYVQRDGDKHTVYRLLSESGPDHAKTFHMVVEINGVTYEAGSGKS-KKIAEQHA 234
Query: 133 AKIALECISKK 143
A++ LE + K
Sbjct: 235 AQLTLEKLMAK 245
>gi|451927628|gb|AGF85506.1| double-stranded RNA binding motif-containing protein [Moumouvirus
goulette]
Length = 254
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASV---------SVDGVTYTSPNTFSHR 125
KN+LQE+ QR+ +PLP+Y S + G H K+ +++ ++ G Y + T S
Sbjct: 4 KNKLQEYFQRNKLPLPIYSSTSIGADHEKKWTSNIYAVIDDKEFTLIGDKYYNSKTESQL 63
Query: 126 KAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNE 165
K AEQ + I + S + + NQD F K+ E
Sbjct: 64 KVAEQMLDHINDQNKSLQNNQDKSLQNNQDKSFQKNNFGE 103
>gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
Length = 233
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE+ Q +PLPVY+ E G +HA F ++S + + T S RK AEQ A
Sbjct: 160 KTRLQEYLQSRDLPLPVYELVEEKGPEHAKIF--TISAKSERFCTTATASSRKKAEQAAA 217
Query: 134 KIALECISKK 143
++ C K
Sbjct: 218 ELLFSCYHGK 227
>gi|238478799|ref|NP_001154411.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|332194213|gb|AEE32334.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
Length = 1206
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 141 SKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTY 200
+KK+KD G L N K+ L + P Y TRQ + F S + FNG+ +
Sbjct: 1083 AKKLKDVGAQLQNSGGENNKNQLQTLLARAGHGSPVYKTRQLKN--NQFRSMVTFNGLDF 1140
Query: 201 TGEPGRSKKEAEQLAARAVIRTLLVTSGSA----TILSEIIKSKGKLYAALNKVKESNYS 256
G+P SKK AE+ AA + L S S+ +S ++K K L+K K
Sbjct: 1141 MGKPCGSKKNAEKDAAHEALLWLQGESKSSLNDLNHMSMLLKKNKKRVGRLHKKKSREVL 1200
Query: 257 TQKIAT 262
T +I +
Sbjct: 1201 TDEILS 1206
>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
Length = 246
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE+ QR G VY +E G HA F V ++GVTY + + S +K AEQ
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHAKTFHMEVEINGVTYEAGSGKS-KKIAEQHA 234
Query: 133 AKIALE 138
A++ LE
Sbjct: 235 AQLTLE 240
>gi|283457655|ref|YP_003362239.1| acyl-coenzyme A synthetase [Rothia mucilaginosa DY-18]
gi|283133654|dbj|BAI64419.1| acyl-coenzyme A synthetase [Rothia mucilaginosa DY-18]
Length = 565
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 16/72 (22%)
Query: 266 PTTA-IPKSSSGIHPI--PTT---PEASVGMH-----SIPTIPEATAGIHPT-----PAI 309
PT A +P+++ G++P PT PEA+VG++ ++P +PEAT G++PT PA+
Sbjct: 391 PTVAPLPEATVGVNPTDAPTVAPLPEATVGVNPTDAPTVPALPEATVGVNPTDAPTVPAL 450
Query: 310 TEASTGMHPTSA 321
EA+ G++PT A
Sbjct: 451 PEATIGVNPTDA 462
>gi|385678566|ref|ZP_10052494.1| ribonuclease III [Amycolatopsis sp. ATCC 39116]
Length = 230
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
L K LQE +G+ +P Y+ + G H +F A+V V G + + N + +K AEQ
Sbjct: 153 LDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGNGTT-KKEAEQK 211
Query: 132 VAKIALECISKKIKDEGC 149
A+ A +S+++K EG
Sbjct: 212 AAETAWRALSEELKPEGS 229
>gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340783042|ref|YP_004749649.1| ribonuclease III [Acidithiobacillus caldus SM-1]
gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340557193|gb|AEK58947.1| Ribonuclease III [Acidithiobacillus caldus SM-1]
Length = 232
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE Q G PLP Y E G H +F A SV GV T S RK AEQ A
Sbjct: 155 KTRLQEFLQGQGKPLPSYSLVEEKGQAHERRFVARCSVQGVPATDAEAGSRRK-AEQQAA 213
Query: 134 KIALECISK 142
+ LE + K
Sbjct: 214 QQMLEQLQK 222
>gi|307610570|emb|CBX00158.1| hypothetical protein LPW_19031 [Legionella pneumophila 130b]
Length = 206
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPE-HLMH-----KNRLQEHAQRSGIP 88
A A + A + +A+K + ++L +R+ + L H K +LQE Q S
Sbjct: 94 ADALEAILAAIYLDGGMTAAKQII--LMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFA 151
Query: 89 LPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
LP Y + EG +HA F + +++GV+ + T +R+ AEQ AK LE
Sbjct: 152 LPEYVLTKVEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLE 202
>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 238
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 57 VTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTY 116
+ AP++ P R + K LQE A R G+P PVY + G H+ +F A V+V
Sbjct: 150 LIAPLLEDPARFGAAMDPKTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVGDAVR 209
Query: 117 TSPNTFSHRKA 127
T+ S ++A
Sbjct: 210 TTGEGSSKKQA 220
>gi|389806679|ref|ZP_10203726.1| ribonuclease III [Rhodanobacter thiooxydans LCS2]
gi|388445331|gb|EIM01411.1| ribonuclease III [Rhodanobacter thiooxydans LCS2]
Length = 219
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 75 KNRLQEHAQRSGIPLPVYQ---SHNEGFQHAPKFRASVSVDG-VTYTSPNTFSHRKAAEQ 130
K RLQE Q G+PLP Y+ SH E HA F S + + + + R+AAEQ
Sbjct: 145 KTRLQEWLQAKGLPLPQYELVASHGE--DHAKTFDVSCRIGEPLAFIAEAHGGSRRAAEQ 202
Query: 131 DVAKIALECISKKIKD 146
D A+ L + ++ +D
Sbjct: 203 DAAETVLNRLLEQQRD 218
>gi|226735379|sp|B8CQJ5.1|RNC_SHEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212558007|gb|ACJ30461.1| Ribonuclease III [Shewanella piezotolerans WP3]
Length = 225
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQEH Q+ PLP+Y+ H EG H F V+ + S R+ AEQ A
Sbjct: 157 KTLLQEHLQKFRKPLPIYKVVHTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAA 216
Query: 134 KIALECISK 142
LE I K
Sbjct: 217 AQVLELIKK 225
>gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396]
gi|123534042|sp|Q2SL32.1|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396]
Length = 226
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE+ Q + LP Y+ + +G HA F +DG++ + T S R+ AEQ A
Sbjct: 156 KTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAA 215
Query: 134 KIAL 137
K AL
Sbjct: 216 KQAL 219
>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
Length = 246
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE+ QR G VY+ +E G HA F V ++GVTY + + S +K AEQ
Sbjct: 176 YKTLLQEYVQRDGDKHIVYRLLSESGPDHAKTFHIVVEINGVTYEAGSGKS-KKIAEQHA 234
Query: 133 AKIALE 138
A++ LE
Sbjct: 235 AQLTLE 240
>gi|407716337|ref|YP_006837617.1| ribonuclease 3 [Cycloclasticus sp. P1]
gi|407256673|gb|AFT67114.1| Ribonuclease 3 [Cycloclasticus sp. P1]
Length = 225
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K +LQE+ Q GI +P Y G H +F+ VDGV T S RK AEQ A
Sbjct: 157 KTQLQEYLQARGIAVPRYSVISTTGLDHNQQFKVECQVDGVEEVVCATASSRKKAEQKAA 216
Query: 134 KIALECI 140
LE +
Sbjct: 217 SKILEGL 223
>gi|54297783|ref|YP_124152.1| ribonuclease III [Legionella pneumophila str. Paris]
gi|148359410|ref|YP_001250617.1| ribonuclease III [Legionella pneumophila str. Corby]
gi|296107456|ref|YP_003619157.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
gi|397667593|ref|YP_006509130.1| RNase III [Legionella pneumophila subsp. pneumophila]
gi|81370372|sp|Q5X446.1|RNC_LEGPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043325|sp|A5ID21.1|RNC_LEGPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|53751568|emb|CAH12986.1| hypothetical protein lpp1834 [Legionella pneumophila str. Paris]
gi|148281183|gb|ABQ55271.1| ribonuclease III [Legionella pneumophila str. Corby]
gi|295649358|gb|ADG25205.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
gi|395131004|emb|CCD09253.1| RNase III [Legionella pneumophila subsp. pneumophila]
Length = 224
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPE-HLMH-----KNRLQEHAQRSGIP 88
A A + A + +A+K + ++L +R+ + L H K +LQE Q S
Sbjct: 112 ADALEAILAAIYLDGGMTAAKQII--LMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFA 169
Query: 89 LPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
LP Y + EG +HA F + +++GV+ + T +R+ AEQ AK LE
Sbjct: 170 LPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLE 220
>gi|54294754|ref|YP_127169.1| ribonuclease III [Legionella pneumophila str. Lens]
gi|397664331|ref|YP_006505869.1| RNase III [Legionella pneumophila subsp. pneumophila]
gi|81368418|sp|Q5WVI4.1|RNC_LEGPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|53754586|emb|CAH16070.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens]
gi|395127742|emb|CCD05941.1| RNase III [Legionella pneumophila subsp. pneumophila]
Length = 224
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPE-HLMH-----KNRLQEHAQRSGIP 88
A A + A + +A+K + ++L +R+ + L H K +LQE Q S
Sbjct: 112 ADALEAILAAIYLDGGMTAAKQII--LMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFA 169
Query: 89 LPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
LP Y + EG +HA F + +++GV+ + T +R+ AEQ AK LE
Sbjct: 170 LPEYVLTKVEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLE 220
>gi|167623017|ref|YP_001673311.1| ribonuclease III [Shewanella halifaxensis HAW-EB4]
gi|189043349|sp|B0TIV7.1|RNC_SHEHH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|167353039|gb|ABZ75652.1| Ribonuclease III [Shewanella halifaxensis HAW-EB4]
Length = 225
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQEH Q+ PLPVY+ H EG H F V+ ++ S R+ AEQ A
Sbjct: 157 KTLLQEHLQKFRKPLPVYKVVHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 134 KIALECISK 142
LE + K
Sbjct: 217 AQVLELMKK 225
>gi|21226646|ref|NP_632568.1| exoribonuclease II [Methanosarcina mazei Go1]
gi|20904927|gb|AAM30240.1| Exoribonuclease II [Methanosarcina mazei Go1]
Length = 605
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 150 PLIN--QDTVFCKSILNEFAVKMNLELPAYSTRQSEAL-LPVFVSSLVFNGVTYTGEPGR 206
P IN +D +F L E+ L LPAYS A P+F + F T TG+ G+
Sbjct: 529 PTINTSKDPIFA---LQEYCQAKKLPLPAYSFEMEGATNRPIFTCTCTFGSSTSTGQAGK 585
Query: 207 SKKEAEQLAARAVIRTLLVTS 227
K+ A++LAARA+I TL+ S
Sbjct: 586 -KQRAKRLAARAMIYTLVTGS 605
>gi|90416440|ref|ZP_01224371.1| ribonuclease III [gamma proteobacterium HTCC2207]
gi|90331639|gb|EAS46867.1| ribonuclease III [gamma proteobacterium HTCC2207]
Length = 225
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE Q G PLP Y+ EG H+ F S +D V T+ T S R+ AEQ VA
Sbjct: 156 KTALQEWLQARGKPLPEYRVVKTEGEDHSRLFTMSCKIDAVDETAEATASSRRKAEQLVA 215
Query: 134 KIALECISKKIKD 146
E + KK+++
Sbjct: 216 ----EKLVKKLEN 224
>gi|119944412|ref|YP_942092.1| ribonuclease III [Psychromonas ingrahamii 37]
gi|189043334|sp|A1SSM8.1|RNC_PSYIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|119863016|gb|ABM02493.1| RNAse III [Psychromonas ingrahamii 37]
Length = 228
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQEH Q PLP+Y+ +G H +F S S+DG+ S RK AEQ A
Sbjct: 159 KTRLQEHLQSRKQPLPIYEVLEIKGEAHNQRFTMSCSIDGLKSVQGQGTSRRK-AEQIAA 217
Query: 134 KIALECIS 141
L+ +S
Sbjct: 218 NKMLDSLS 225
>gi|452209144|ref|YP_007489258.1| Exoribonuclease II [Methanosarcina mazei Tuc01]
gi|452099046|gb|AGF95986.1| Exoribonuclease II [Methanosarcina mazei Tuc01]
Length = 599
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 150 PLIN--QDTVFCKSILNEFAVKMNLELPAYSTRQSEAL-LPVFVSSLVFNGVTYTGEPGR 206
P IN +D +F L E+ L LPAYS A P+F + F T TG+ G+
Sbjct: 523 PTINTSKDPIFA---LQEYCQAKKLPLPAYSFEMEGATNRPIFTCTCTFGSSTSTGQAGK 579
Query: 207 SKKEAEQLAARAVIRTLLVTS 227
K+ A++LAARA+I TL+ S
Sbjct: 580 -KQRAKRLAARAMIYTLVTGS 599
>gi|89094542|ref|ZP_01167480.1| ribonuclease III [Neptuniibacter caesariensis]
gi|89081141|gb|EAR60375.1| ribonuclease III [Oceanospirillum sp. MED92]
Length = 226
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE Q + LP Y+ N EG HA F V G+ + T S R+ AEQ+ A
Sbjct: 156 KTRLQEFLQSRRLALPEYELTNVEGEAHAQTFYIDCRVSGLNNPAKGTGSSRRQAEQEAA 215
Query: 134 KIAL 137
K AL
Sbjct: 216 KNAL 219
>gi|157960865|ref|YP_001500899.1| ribonuclease III [Shewanella pealeana ATCC 700345]
gi|189043351|sp|A8H1C7.1|RNC_SHEPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157845865|gb|ABV86364.1| Ribonuclease III [Shewanella pealeana ATCC 700345]
Length = 225
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE+ Q+ PLPVY+ +H EG H F V+ ++ S R+ AEQ A
Sbjct: 157 KTLLQEYLQKYRKPLPVYRVAHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 134 KIALECISK 142
LE I K
Sbjct: 217 AQVLELIKK 225
>gi|94469430|gb|ABF20205.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271805|gb|ABF69302.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271811|gb|ABF69306.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271844|gb|ABF69328.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 41.2 bits (95), Expect = 1.0, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G P P Y N+ G H P F V +D T T ++K AEQ A
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDS-HETLHATGHNKKLAEQKAA 125
Query: 134 KIALECISKKIK 145
+ LE I+ KIK
Sbjct: 126 SLMLEKINYKIK 137
>gi|415996211|ref|ZP_11560416.1| ribonuclease III, partial [Acidithiobacillus sp. GGI-221]
gi|339835666|gb|EGQ63317.1| ribonuclease III [Acidithiobacillus sp. GGI-221]
Length = 177
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 52 SASKSVTAPVV---LTPNRVPEHLMH-KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFR 106
A++ + A +V +T + E L K RLQE Q G P+PVY + E G H +F
Sbjct: 79 GAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEFLQGQGRPVPVYTTVAEKGQAHERRFV 138
Query: 107 ASVSVDGVTYTSPNTFSHRKAAEQDVA 133
A SV G T S RKA +Q A
Sbjct: 139 ARCSVPGAEATEAEDGSRRKAEQQAAA 165
>gi|347964635|ref|XP_316826.4| AGAP000856-PA [Anopheles gambiae str. PEST]
gi|333469437|gb|EAA12065.4| AGAP000856-PA [Anopheles gambiae str. PEST]
Length = 506
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 63 LTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF 122
+ N + ++ + K++L HA R+G+P Y+ Q FRA++ DG YTS
Sbjct: 380 IRSNFIDDNSLPKSKLYLHAVRNGLPRAQYEVQ----QKDKLFRATIRFDGQRYTSSFWE 435
Query: 123 SHRKAAEQDVAKIALECISKK 143
+++ AEQ AL C+ K+
Sbjct: 436 KNKRYAEQ---AAALVCLLKR 453
>gi|440684120|ref|YP_007158915.1| RNAse III [Anabaena cylindrica PCC 7122]
gi|428681239|gb|AFZ60005.1| RNAse III [Anabaena cylindrica PCC 7122]
Length = 228
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 56 SVTAPVVLTPNRVPEHLMHKNRLQEHAQRS-GIPLPVYQSHNEGF-QHAPKFRASVSVDG 113
SV+ +V++ + V KNR QE QR G P Y + G HAP+F A V VDG
Sbjct: 140 SVSEKIVVSRSNVD----SKNRFQEWVQREIGANPPKYMTEQIGGPSHAPEFVAKVLVDG 195
Query: 114 VTYTSPNTFSHRKAAEQDVAKIALECISKK 143
Y ++K AE+D A+ AL + K+
Sbjct: 196 KEYGIGKG-RNKKEAEKDAAEDALAKLKKR 224
>gi|100271817|gb|ABF69310.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 40.8 bits (94), Expect = 1.4, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G P P Y N+ G H P F V +D T T ++K AEQ A
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDS-HETLHATGHNKKPAEQKAA 125
Query: 134 KIALECISKKIK 145
+ LE I+ KIK
Sbjct: 126 SLMLEKINYKIK 137
>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
Length = 233
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 63 LTPNRVPEHLMH----KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDG 113
LTP VPE H K+RLQE Q+ PVY+ +E G HAP+F ++V VDG
Sbjct: 146 LTPYMVPELAKHPISPKSRLQEVCQKRFHIAPVYELEDETGPAHAPQFTSAVFVDG 201
>gi|422324415|ref|ZP_16405452.1| hypothetical protein HMPREF0737_00562 [Rothia mucilaginosa M508]
gi|353344471|gb|EHB88783.1| hypothetical protein HMPREF0737_00562 [Rothia mucilaginosa M508]
Length = 597
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 36/163 (22%)
Query: 240 KGKLYAALNKVKESNYSTQKIATSYVPTTA-----IPKSSSGIHPI--PTT---PEASVG 289
+G Y + + K Q+ S VPT A +P+++ G++P PT PEA++G
Sbjct: 261 QGAEYGSFDAQKPLELFAQEPVVSAVPTYAPTVAPLPEATIGVNPTDAPTVAPLPEATIG 320
Query: 290 MH-----SIPTIPEATAGIHPTPAIT-----EASTGMHPTSAAI-----EVSTGMHSTAA 334
++ ++ +PEAT G++PT A T EA+ G++PT A E + G++ T A
Sbjct: 321 VNPTDAPTVAPLPEATVGVNPTDAPTVAPLPEATIGVNPTDAPTVAPLPEATVGVNPTDA 380
Query: 335 DS-----ETSTGMNLPCHPFKKP------KLEPPSEPVVLPIP 366
+ E + G+N P P + P P V P+P
Sbjct: 381 PTVAPLPEATVGVNPTDAPTVAPLPEATVGVNPTDAPTVAPLP 423
>gi|389795666|ref|ZP_10198780.1| ribonuclease III [Rhodanobacter fulvus Jip2]
gi|388430318|gb|EIL87492.1| ribonuclease III [Rhodanobacter fulvus Jip2]
Length = 219
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 75 KNRLQEHAQRSGIPLPVYQ---SHNEGFQHAPKF--RASVSVDGVTYTSPNTFSHRKAAE 129
K RLQE Q G PLP Y+ SH E HA F R SVS + + + T R+ AE
Sbjct: 145 KTRLQEWLQAGGWPLPHYELVASHGE--DHAKTFDIRCSVS-EPMVLVAETTGPSRRGAE 201
Query: 130 QDVAKIAL 137
QD A+I L
Sbjct: 202 QDAAEIVL 209
>gi|30694379|ref|NP_175298.2| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|332194212|gb|AEE32333.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
Length = 1197
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 141 SKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTY 200
+KK+KD G L N K+ L + P Y TRQ + F S + FNG+ +
Sbjct: 1083 AKKLKDVGAQLQNSGGENNKNQLQTLLARAGHGSPVYKTRQLKN--NQFRSMVTFNGLDF 1140
Query: 201 TGEPGRSKKEAEQLAARAVIRTL 223
G+P SKK AE+ AA + L
Sbjct: 1141 MGKPCGSKKNAEKDAAHEALLWL 1163
>gi|371945204|gb|AEX63024.1| hypothetical protein mv_R822 [Moumouvirus Monve]
Length = 100
Score = 40.4 bits (93), Expect = 1.7, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV---------DGVTYTSPNTFSHR 125
KN+LQE+ Q++ +PLP+Y S + G H K+ ++++V G Y + T S
Sbjct: 4 KNKLQEYFQKNKLPLPIYSSTSIGAAHEKKWTSNITVIINNKEYTLIGDKYYNSKTESQL 63
Query: 126 KAAEQDVAKIALECISKKIKD 146
K AEQ + I + S KI++
Sbjct: 64 KVAEQMLDHINNQNKSNKIEN 84
>gi|12597813|gb|AAG60124.1|AC073555_8 hypothetical protein [Arabidopsis thaliana]
Length = 1167
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 141 SKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTY 200
+KK+KD G L N K+ L + P Y TRQ + F S + FNG+ +
Sbjct: 1053 AKKLKDVGAQLQNSGGENNKNQLQTLLARAGHGSPVYKTRQLKN--NQFRSMVTFNGLDF 1110
Query: 201 TGEPGRSKKEAEQLAARAVIRTL 223
G+P SKK AE+ AA + L
Sbjct: 1111 MGKPCGSKKNAEKDAAHEALLWL 1133
>gi|52842090|ref|YP_095889.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777725|ref|YP_005186163.1| ribonuclease III [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|81377263|sp|Q5ZUD5.1|RNC_LEGPH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52629201|gb|AAU27942.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364508540|gb|AEW52064.1| ribonuclease III [Legionella pneumophila subsp. pneumophila ATCC
43290]
Length = 224
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPE-HLMH-----KNRLQEHAQRSGIP 88
A A + A + A+K + ++L +R+ + L H K +LQE Q S
Sbjct: 112 ADALEAILAAIYLDGGMIAAKQII--LMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFA 169
Query: 89 LPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
LP Y + EG +HA F + +++GV+ + T +R+ AEQ AK LE
Sbjct: 170 LPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLE 220
>gi|372489094|ref|YP_005028659.1| ribonuclease III [Dechlorosoma suillum PS]
gi|359355647|gb|AEV26818.1| ribonuclease III [Dechlorosoma suillum PS]
Length = 230
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE+ Q PLPVY + +G H +FR V + S R+AAEQ+ A
Sbjct: 162 KTRLQEYLQARRQPLPVYTLAATDGQAHLQQFRVLCEVASAALQTEGQGSSRRAAEQEAA 221
Query: 134 KIALE 138
ALE
Sbjct: 222 SRALE 226
>gi|333995527|ref|YP_004528140.1| ribonuclease III [Treponema azotonutricium ZAS-9]
gi|333737229|gb|AEF83178.1| ribonuclease III [Treponema azotonutricium ZAS-9]
Length = 228
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 40 PVQARVQAPATASASKSVTAPVV----LTPNRVPE---HLMHKNRLQEHAQRSGIPLPVY 92
++A + A S K+ A VV +RV E H +K+ LQE QR PVY
Sbjct: 115 ALEAIIGAIYLDSGYKAAFAFVVSFMEAEISRVLEKRHHQDYKSLLQELCQRLYHNYPVY 174
Query: 93 QS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
+ G HA F V V + Y P T ++K AEQ+ AK+A E + K
Sbjct: 175 RLLKRSGPDHARLFWMEVIVSDIAY-GPGTGRNKKTAEQEAAKMAYEALEK 224
>gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 223
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE+ Q + LP Y + EG HA F + +D + + + S+R+AAEQ A
Sbjct: 154 KTRLQEYLQGRRLALPQYALTGAEGEAHAQHFTVTCVIDALRIRTEGSGSNRRAAEQIAA 213
Query: 134 KIALECIS 141
+ AL+ +
Sbjct: 214 ERALDTLG 221
>gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
Length = 1385
Score = 40.0 bits (92), Expect = 2.0, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQ 130
HL K +L E Q+ +PL +Y + +G +H F++ V V+G S + +K +E+
Sbjct: 6 HLSEKVQLNEWLQKRKLPLSIYHTEYKGSEHNKDFKSIVIVNGKEIES-DWKKTKKESEK 64
Query: 131 DVAKIALECISK 142
D AK LE + K
Sbjct: 65 DCAKRILEFLVK 76
>gi|416999129|ref|ZP_11939798.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333977282|gb|EGL78141.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 246
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE+ QR G VY +E G H F V ++GVTY + + S +K AEQ
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHDKTFHMEVEINGVTYEAGSGKS-KKIAEQHA 234
Query: 133 AKIALE 138
A++ LE
Sbjct: 235 AQLTLE 240
>gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
Length = 1142
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 141 SKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTY 200
S +++D+G P DT K IL + +P Y TR S + F+S +V G +
Sbjct: 1054 SAELQDKGTP----DT---KGILQTLVQRAGFAVPTYQTRSSGS---QFISCVVVRGKKF 1103
Query: 201 TGEPGRSKKEAEQ 213
GEP SKK+AE+
Sbjct: 1104 IGEPAESKKQAEK 1116
>gi|359491476|ref|XP_002277625.2| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis
vinifera]
Length = 1178
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 175 PAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSAT 231
P Y TRQ + +F S+++FNG+ + G+P SKK AE+ AA + L+ S+T
Sbjct: 1103 PVYKTRQLKN--NMFRSTVIFNGLQFAGQPCSSKKLAEKDAAAKALEWLMGERQSST 1157
>gi|326680329|ref|XP_694444.5| PREDICTED: hypothetical protein LOC566084 [Danio rerio]
Length = 937
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
+KN L E + PV+ Q A +R V+V+G ++T F+ +K A Q+VA
Sbjct: 328 YKNHLFEFCRAKKWLEPVFTET----QEAQGYRGKVTVNGQSFTGIRVFNDKKGAHQEVA 383
Query: 134 KIALE 138
IALE
Sbjct: 384 CIALE 388
>gi|297734269|emb|CBI15516.3| unnamed protein product [Vitis vinifera]
Length = 1057
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 175 PAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSAT 231
P Y TRQ + +F S+++FNG+ + G+P SKK AE+ AA + L+ S+T
Sbjct: 982 PVYKTRQLKN--NMFRSTVIFNGLQFAGQPCSSKKLAEKDAAAKALEWLMGERQSST 1036
>gi|347758995|ref|YP_004866557.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591513|gb|AEP10555.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 232
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 52 SASKSVTAPVV---LTPNRVPEHLMHKNRLQEHAQRSGIPLPVY-QSHNEGFQHAPKFRA 107
SA +S+ ++ LTP R P K LQE AQ G PLP Y G HAP F
Sbjct: 140 SAIQSLWGDLLQADLTPPRDP-----KTALQEWAQGQGHPLPRYTMIERSGPDHAPIFTV 194
Query: 108 SVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 143
SV V+G + S R+AAE+ A L I K
Sbjct: 195 SVFVEGFDEVAEQGTS-RRAAEKAAATRLLNIIEKD 229
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE+ QR LPVYQ ++ G H +F +V + G Y + S +K AEQ
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRS-KKEAEQKA 223
Query: 133 AKIALECISKKIKD 146
AK AL +++ +D
Sbjct: 224 AKDALSRLARTSRD 237
>gi|257464706|ref|ZP_05629077.1| ribonuclease III [Actinobacillus minor 202]
gi|257450366|gb|EEV24409.1| ribonuclease III [Actinobacillus minor 202]
Length = 223
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE Q +PLP Y+ + +G H F+ + V G+ + R+ AEQ+VA
Sbjct: 154 KTRLQEFLQGRKLPLPEYEVIDIKGEAHNQTFKVTCKVQGIDEIFTGQGTSRRKAEQNVA 213
Query: 134 KIALECISKK 143
+ L I KK
Sbjct: 214 EKVLTQIMKK 223
>gi|270156955|ref|ZP_06185612.1| ribonuclease III [Legionella longbeachae D-4968]
gi|289164621|ref|YP_003454759.1| ribonuclease III [Legionella longbeachae NSW150]
gi|269988980|gb|EEZ95234.1| ribonuclease III [Legionella longbeachae D-4968]
gi|288857794|emb|CBJ11638.1| putative ribonuclease III [Legionella longbeachae NSW150]
Length = 227
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 75 KNRLQEHAQRSGIPLPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K +LQE+ Q IPLP Y + EG +H F + SV+G+ + S+R+ AEQ A
Sbjct: 156 KTQLQEYLQAEKIPLPEYILTKIEGDEHNQIFYITCSVNGMKQQTFGQGSNRRKAEQLAA 215
Query: 134 KIALE 138
K LE
Sbjct: 216 KAMLE 220
>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
Length = 232
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 57 VTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTY 116
V PV+ + L K LQE A G+ +P Y G HA F A V + G
Sbjct: 139 VFDPVMADAASLGAALDWKTSLQEMAAHHGLGVPRYHLEGTGPDHARSFTAEVHL-GERV 197
Query: 117 TSPNTFSHRKAAEQDVAKIALECISKKIKD 146
+ +K AEQ+VA+IA ++ +++D
Sbjct: 198 FAGGAGRSKKEAEQEVAEIAWRTLADELED 227
>gi|242056673|ref|XP_002457482.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor]
gi|241929457|gb|EES02602.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor]
Length = 1390
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
K+ L F + P Y T+Q ++ L F S++ FNG+ + G+P +KK AE+ AA
Sbjct: 1291 KNQLQTFLTRAGHSNPTYKTKQIKSYL--FRSTVEFNGMQFVGQPCANKKLAEKDAASEA 1348
Query: 220 IRTLLVTSGSATI 232
+ L G ATI
Sbjct: 1349 L-NWLTGDGGATI 1360
>gi|240949696|ref|ZP_04754031.1| ribonuclease III [Actinobacillus minor NM305]
gi|240295954|gb|EER46630.1| ribonuclease III [Actinobacillus minor NM305]
Length = 223
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE Q +PLP Y+ + +G H F+ + V G+ + R+ AEQ+VA
Sbjct: 154 KTRLQEFLQGRKLPLPEYEVIDIKGEAHNQTFKVTCKVQGIEEIFTGQGTSRRKAEQNVA 213
Query: 134 KIALECISKK 143
+ L I KK
Sbjct: 214 EKVLTQIMKK 223
>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
Length = 238
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 57 VTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTY 116
+ AP++ P R + K LQE A R G+P P Y + G H+ +F A V+V
Sbjct: 150 LIAPLLEDPARFGAAMDPKTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVGDAVR 209
Query: 117 TSPNTFSHRKA 127
T+ S ++A
Sbjct: 210 TTGEGSSKKQA 220
>gi|37929016|gb|AAP70345.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929023|gb|AAP70347.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929030|gb|AAP70349.1| ribonuclease III [Ehrlichia ruminantium]
gi|41814830|gb|AAS10486.1| ribonuclease III [Ehrlichia ruminantium]
Length = 171
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G P P Y N+ G H P F V +D T T ++K AEQ A
Sbjct: 101 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHE-TLHATGHNKKLAEQKAA 159
Query: 134 KIALECISKKIK 145
+ LE I+ KIK
Sbjct: 160 SLMLEKINYKIK 171
>gi|83311357|ref|YP_421621.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
gi|82946198|dbj|BAE51062.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
Length = 228
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G PLP YQ EG H P F VSV+GV ++ + ++ AEQ A
Sbjct: 161 KTGLQEWAQGRGKPLPHYQVLGQEGPPHEPIFLIEVSVEGVG-SAVGRGASKRVAEQAAA 219
Query: 134 KIALECI 140
+ LE +
Sbjct: 220 GLLLEQV 226
>gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1]
gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1]
Length = 368
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 73 MHKNR---------LQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTF 122
MHK R LQE AQ G+P PVY+ G H P+FR +V + G+ ++
Sbjct: 283 MHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLE-SAEGVG 341
Query: 123 SHRKAAEQDVAKIALE 138
++AAE+ A + +E
Sbjct: 342 GSKRAAEKVAASVMIE 357
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE+ QR LPVYQ ++ G H +F +V + G Y + S +K AEQ
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKS-KKEAEQKA 223
Query: 133 AKIALECISKKIKD 146
AK AL +++ +D
Sbjct: 224 AKDALSRLARTSRD 237
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K LQE+ QR LPVYQ ++ G H +F +V + G Y + S +K AEQ
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKS-KKEAEQKA 223
Query: 133 AKIALECISKKIKD 146
AK AL +++ +D
Sbjct: 224 AKDALSRLARTSRD 237
>gi|355572774|ref|ZP_09043840.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
gi|354824318|gb|EHF08571.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
Length = 240
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K RLQEH Q++ +PVY+ EG HAP F VSV GV + + + A Q+
Sbjct: 170 YKKRLQEHIQKTSRQIPVYERIAKEGPDHAPVFTYRVSVSGVILGTGRGIT-KTQATQEA 228
Query: 133 AKIAL 137
A+ AL
Sbjct: 229 ARNAL 233
>gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 226
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 52 SASKSVTAPVV---LTPNRVPEHLMH-KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFR 106
A++ + A +V +T + E L K RLQE Q G P+PVY + E G H +F
Sbjct: 128 GAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEFLQGQGRPVPVYTTVAEKGQAHERRFV 187
Query: 107 ASVSVDGVTYTSPNTFSHRKAAEQDVA 133
A SV G T S RKA +Q A
Sbjct: 188 ARCSVPGAEATEAEDGSRRKAEQQAAA 214
>gi|94469424|gb|ABF20201.1| ribonuclease III [Ehrlichia ruminantium]
Length = 145
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G P P Y N+ G H P F V +D T T ++K AEQ A
Sbjct: 75 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHE-TLHATGHNKKLAEQKAA 133
Query: 134 KIALECISKKIK 145
+ LE I+ KIK
Sbjct: 134 SLMLEKINYKIK 145
>gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799]
gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799]
Length = 224
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQEH Q PLP Y+ + EG H +F SV + S R+ AEQD A
Sbjct: 157 KTRLQEHLQARKQPLPEYEVVSVEGDAHNQRFTVRCSVSALAEPMIGNGSSRRKAEQDAA 216
Query: 134 KIALECIS 141
LE +S
Sbjct: 217 SRVLEQLS 224
>gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 233
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASV---SVDGVTYTSPNTFSHRKAAEQ 130
K LQE QR+ +PLP Y+ + G H P+F SV S D V+ +P+ +K AEQ
Sbjct: 164 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCIESYDKVSACAPS----KKIAEQ 219
Query: 131 DVAKIALECISK 142
A++ LE I K
Sbjct: 220 KAAELILEKIKK 231
>gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3]
gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3]
Length = 236
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGV 114
K+ LQE AQ G PLP Y+ + G HAP F VSV+GV
Sbjct: 168 KSALQEWAQAKGRPLPTYRVADRTGSDHAPTFTIEVSVEGV 208
>gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605]
gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605]
Length = 241
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 56 SVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAP--KFRASVSVDG 113
S T VL P K LQE +Q G+ LP Y + QH +FR VS+ G
Sbjct: 149 SATTQAVLA---TPHQFGGKTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRCQVSIQG 205
Query: 114 VTYTSPNTFSHRKAAEQDVAKIALECI 140
S RK AEQ+ A AL+ +
Sbjct: 206 RNLAEAKGRS-RKEAEQNAATAALQAL 231
>gi|373451001|ref|ZP_09542940.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
gi|371931808|emb|CCE77958.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
Length = 233
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASV---SVDGVTYTSPNTFSHRKAAEQ 130
K LQE QR+ +PLP Y+ + G H P+F SV S D V+ +P+ +K AEQ
Sbjct: 164 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCIESYDKVSACAPS----KKIAEQ 219
Query: 131 DVAKIALECISK 142
A++ LE I K
Sbjct: 220 KAAELILEKIKK 231
>gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|238056573|sp|B3CMS0.1|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
Length = 230
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASV---SVDGVTYTSPNTFSHRKAAEQ 130
K LQE QR+ +PLP Y+ + G H P+F SV S D V+ +P+ +K AEQ
Sbjct: 161 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCIESYDKVSACAPS----KKIAEQ 216
Query: 131 DVAKIALECISK 142
A++ LE I K
Sbjct: 217 KAAELILEKIKK 228
>gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999]
Length = 241
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSP--NTFSHRKAAEQD 131
K RLQE+ Q GI LPVY+ + +G H F +VS + VT + P + RK AEQ
Sbjct: 172 KTRLQEYLQSRGIELPVYEVVDIKGKDHNQTF--TVSCNTVTLSDPIQAQGASRKRAEQI 229
Query: 132 VAKIALECISKKIKDE 147
A++ LE K++D+
Sbjct: 230 AAQLTLE----KLQDD 241
>gi|384085608|ref|ZP_09996783.1| ribonuclease 3 [Acidithiobacillus thiooxidans ATCC 19377]
Length = 226
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQ 130
K RLQE Q G PLP+Y E G H +F A SV G+ T S RKA +Q
Sbjct: 155 KTRLQEFLQGRGRPLPIYTLIEEKGQAHERRFVARCSVPGIEPTEAEDGSRRKAEQQ 211
>gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus]
gi|81666891|sp|Q7VRR0.1|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus]
Length = 232
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE+ Q +PLP+Y + +G H F + V + Y+ S R+ AEQD A
Sbjct: 160 KTRLQEYLQHHHLPLPIYCINQVQGQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAA 219
Query: 134 KIALE 138
+ AL+
Sbjct: 220 ENALK 224
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 71 HLM-HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAA 128
H+M +K++LQE QR GI L Y+ E G H+ +F + VS++G T +K A
Sbjct: 168 HVMDYKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNG-EELGTGTGKSKKEA 226
Query: 129 EQDVAKIALECISKK 143
EQ A+IAL+ + K
Sbjct: 227 EQHAAEIALKNLKNK 241
>gi|226940389|ref|YP_002795463.1| ribonuclease III [Laribacter hongkongensis HLHK9]
gi|226715316|gb|ACO74454.1| Rnc [Laribacter hongkongensis HLHK9]
Length = 238
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE Q +PLP Y+ N+ G H +F + + + + S R+AAEQ A
Sbjct: 158 KTRLQEMLQARRLPLPAYRILNQSGDAHLSQFEVACDIPQLGLATCGEGSSRRAAEQLAA 217
Query: 134 KIALECISKKIKDEGCP 150
+ A+E I + G P
Sbjct: 218 ERAIEAIEAQDAKTGKP 234
>gi|6010435|gb|AAF01135.1| erythrocyte membrane protein 3 [Plasmodium falciparum]
Length = 1680
Score = 38.9 bits (89), Expect = 4.8, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 248 NKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTP 307
NK +S + ++ T T + + ++G+ P + + G+ + P+ + G+ TP
Sbjct: 1329 NKDLKSIGNMEQQNTGLKNTPSKGQQNTGLKNTPNERQQNTGLKNTPSEGQQNTGLKNTP 1388
Query: 308 AITEASTGMHPTSAAIEVSTGMHSTAADSETSTGM-NLPCHPFKKPKLE-PPSEPVVLPI 365
+ + +TG+ T + +TG+ +T ++ + +TG+ N P + L+ PSE
Sbjct: 1389 SEGQQNTGLKNTPNERQQNTGLKNTPSEGQQNTGLKNTPIEGQQNTGLKNTPSE------ 1442
Query: 366 PFVPPVLGQHSEGGSSSTNKRRKN---KRKANK 395
GQ + G ++ NK ++N K ANK
Sbjct: 1443 -------GQQNTGLKNAANKGQQNTGLKNAANK 1468
>gi|332846792|ref|XP_001174024.2| PREDICTED: uncharacterized protein C17orf97 homolog [Pan
troglodytes]
Length = 326
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 271 PKSSSGIHPIP-------TTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAI 323
P++ G HP P T PEA G H T PEA G HP P EA G HP A+
Sbjct: 212 PEALKGFHPDPKALKGFHTDPEALKGFH---TDPEALKGFHPDP---EALKGFHPDPEAL 265
Query: 324 EVSTGMH 330
+ G H
Sbjct: 266 K---GFH 269
>gi|333892335|ref|YP_004466210.1| ribonuclease III [Alteromonas sp. SN2]
gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2]
Length = 229
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 63 LTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNT 121
L PN P+ K RLQE+ Q +PLP Y+ + G HA F S +V + +
Sbjct: 148 LNPNAHPKD--SKTRLQEYLQGRKLPLPSYEVISISGKDHAQVFEVSCTVTTLDKPVSAS 205
Query: 122 FSHRKAAEQDVAKIALECISKKIK 145
+ R+ AEQ+ A++ LE + K
Sbjct: 206 GNSRRKAEQEAARLTLETLDDTAK 229
>gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
Length = 211
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
HK+ LQE Q G+ +P Y+ N+ G HAP+F + VD + + RK AEQ+
Sbjct: 143 HKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEILLKVDDHSVKARG--KSRKLAEQEA 200
Query: 133 AKIALEC 139
AK L+
Sbjct: 201 AKQMLQI 207
>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
Length = 234
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 58 TAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTY 116
A ++ NR+ + K+ LQE Q +G P+YQ+ E G H F +VS++G
Sbjct: 148 NAQGIIALNRLKDP---KSLLQEKVQSAGQSSPIYQTIGESGLDHNKTFEVAVSIEGKQL 204
Query: 117 TSPNTFSHRKAAEQDVAKIALECI 140
S T +++ AEQ A+ AL+ +
Sbjct: 205 AS-GTGKNKQEAEQKAAQKALDAL 227
>gi|344923148|ref|ZP_08776609.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
Length = 212
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
HK+ LQE Q G+ +P Y+ N+ G HAP+F + VD + + RK AEQ+
Sbjct: 143 HKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEILLKVDDHSVKARG--KSRKLAEQEA 200
Query: 133 AKIALEC 139
AK L+
Sbjct: 201 AKQMLQI 207
>gi|294084100|ref|YP_003550858.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663673|gb|ADE38774.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
Length = 230
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K+RLQE + G+ LP Y+ ++ G HAP+ VSV+G + S+RK AEQ A
Sbjct: 154 KSRLQELVMKQGLALPHYRLISKSGPDHAPEMIYEVSVEGYDSIVASA-SNRKLAEQQAA 212
Query: 134 KIALECISKK 143
+ + I+KK
Sbjct: 213 ALMVAQITKK 222
>gi|58700160|ref|ZP_00374668.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
gi|58533321|gb|EAL57812.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
Length = 183
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE Q++ +PLP Y+ + G H P+F SV ++ S S +K AEQ A
Sbjct: 112 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSA-CASSKKIAEQKAA 170
Query: 134 KIALECISK 142
++ LE I K
Sbjct: 171 ELMLEKIGK 179
>gi|384261139|ref|YP_005416325.1| RNAse III [Rhodospirillum photometricum DSM 122]
gi|378402239|emb|CCG07355.1| RNAse III [Rhodospirillum photometricum DSM 122]
Length = 252
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 75 KNRLQEHAQRSGIPLPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G+PLP Y + EG H P F VSV G + + S R AEQ A
Sbjct: 182 KTALQEWAQGRGLPLPAYDEESREGPAHKPVFTVRVSVQGHGAEAASGPSKR-IAEQAAA 240
Query: 134 KIALECISKKI 144
+ LE ++ +
Sbjct: 241 RCLLERLTLDV 251
>gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13]
gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13]
Length = 228
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE Q + LP Y+ + +G HA +F ++ ++ T+ + S R+AAEQ+ A
Sbjct: 157 KTSLQELLQSKKLMLPKYEVADIKGEAHAQEFIVKCNIAQLSITTEASGSSRRAAEQEAA 216
Query: 134 KIALECISKKI 144
IAL + +KI
Sbjct: 217 SIALPLVKEKI 227
>gi|9889|emb|CAA47935.1| emp3 [Plasmodium falciparum]
Length = 455
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 38/69 (55%)
Query: 274 SSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTA 333
++G+ P + + G+ + P+ + G+ TP+ + +TG+ T + +TG+ +T
Sbjct: 55 NTGLKNTPNERQQNTGLKNTPSEGQQNTGLKNTPSEGQQNTGLKNTPNERQQNTGLKNTP 114
Query: 334 ADSETSTGM 342
++ + +TG+
Sbjct: 115 SEGQQNTGL 123
>gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ]
gi|123494405|sp|Q2GIW0.1|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ]
Length = 236
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ +P Y+ N+ G +HAP F V+V+G + T +K AE A
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHA--TGCKKKYAEIAAA 223
Query: 134 KIALECISKK 143
K+ LE ++K+
Sbjct: 224 KLMLEKVTKQ 233
>gi|319760660|ref|YP_004124598.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
gi|318039374|gb|ADV33924.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
Length = 231
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE+ QR G PLP+Y + +G H+ F + +T S S + AEQ A
Sbjct: 157 KTRLQEYLQRHGCPLPIYYVNRIQGKAHSQMFTIFCQISQLTDPSIGYGSSIQKAEQSAA 216
Query: 134 KIALECISKKIKDEGCP 150
+ AL+ + I++E C
Sbjct: 217 ENALKIL---IQNEDCE 230
>gi|357515751|ref|XP_003628164.1| DsRNA-binding protein [Medicago truncatula]
gi|355522186|gb|AET02640.1| DsRNA-binding protein [Medicago truncatula]
Length = 96
Score = 38.5 bits (88), Expect = 6.7, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 175 PAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
P YST +S EA P+F S + G +TG+ +SKK AE AA+ + L
Sbjct: 41 PVYSTNKSGEAHKPIFSSQVEIKGEIFTGQEAKSKKHAEMSAAKVAYKFL 90
>gi|456354830|dbj|BAM89275.1| ribonuclease III [Agromonas oligotrophica S58]
Length = 358
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G+P PVY+ G H P+FR +V + G+ + ++AAE+ A
Sbjct: 284 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLE-PAEGVGGSKRAAEKVAA 342
Query: 134 KIALE 138
+ +E
Sbjct: 343 SVMIE 347
>gi|408791618|ref|ZP_11203228.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463028|gb|EKJ86753.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 242
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 160 KSILNEFAVKMNLELPAYSTRQSEA---LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAA 216
K+IL EF K +LP YS + E VS ++ TGE G++K+ AEQ+AA
Sbjct: 174 KTILQEFCQKKWKKLPEYSVMKEEGPDHDKEFLVSVVLEKNFQATGE-GKNKRRAEQMAA 232
Query: 217 RAVIRTL 223
+A +R L
Sbjct: 233 KAALRFL 239
>gi|328720070|ref|XP_003246941.1| PREDICTED: hypothetical protein LOC100572663 [Acyrthosiphon pisum]
Length = 474
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 161 SILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGE-PGRSKKEAEQLAARAV 219
+ILNE+A + +L +P YS + L + N + E G SKKEA+QLAA +
Sbjct: 23 TILNEYAAQNHLVVPHYSLIHDGSSLSIVSFKYSVNLDKFVAEGKGSSKKEAKQLAASNL 82
Query: 220 IRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSS--SGI 277
++ ++ + +L+ K + + + N +K + + T+K T V + S S
Sbjct: 83 LKKII--NDKPQLLNSDFK-ECAISSYGNNIKLNTFFTKKNKTIKVDQQDMSAYSILSNK 139
Query: 278 HPIPTTPEASVGMHSIP 294
HP+ E + H +P
Sbjct: 140 HPVAIVNEYATKNHFVP 156
>gi|146341377|ref|YP_001206425.1| ribonuclease III [Bradyrhizobium sp. ORS 278]
gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 278]
Length = 357
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G+P PVY+ G H P+FR +V + G+ + ++AAE+ A
Sbjct: 283 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLE-PAEGVGGSKRAAEKVAA 341
Query: 134 KIALE 138
+ +E
Sbjct: 342 SVMIE 346
>gi|393766231|ref|ZP_10354787.1| ribonuclease III [Methylobacterium sp. GXF4]
gi|392728012|gb|EIZ85321.1| ribonuclease III [Methylobacterium sp. GXF4]
Length = 259
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K+ LQE A +P+PVY G HAP+FR +V V+G+ S R AEQ+ A
Sbjct: 180 KSALQEWAMGRSLPIPVYAVVERTGPDHAPRFRIAVQVEGLEPGHGEGTSKR-VAEQEAA 238
Query: 134 KIALE 138
+ +E
Sbjct: 239 RALME 243
>gi|357521527|ref|XP_003631052.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
gi|355525074|gb|AET05528.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
Length = 1214
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
K+ L F + +LP Y T++ F S+++FNG+ + G+P SKK AE+ AA
Sbjct: 1117 KNQLQTFLSRAGHQLPTYKTQELRN--NQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEA 1174
Query: 220 IRTL 223
I L
Sbjct: 1175 ILWL 1178
>gi|456357539|dbj|BAM91984.1| putative calcium binding hemolysin protein [Agromonas oligotrophica
S58]
Length = 2810
Score = 38.1 bits (87), Expect = 7.6, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 104/237 (43%), Gaps = 30/237 (12%)
Query: 132 VAKIALECISKKIKDEGCPL----INQDTVFCKSIL----NEFAVKMNLELPAYSTRQSE 183
+AK+A + ++ + D G PL + D F ++ A+ ++ ST S
Sbjct: 2076 IAKVAGQTVT--LTDNGVPLGTATVQADGSFAATVTLPNQGSNAIVASVTDSFGSTGSSA 2133
Query: 184 ALLPVFVS---SLVFNGVTYTGEPGRSKKEAEQL----AARAVIRTLLVTSGSATILSEI 236
+++ S ++ GV++ G G ++ A + AA V R++ +T T+ +
Sbjct: 2134 SVVDFLYSLAPTVAITGVSHNGY-GATQTIAGTVVSGGAATVVGRSVTLTDNGVTVGTAT 2192
Query: 237 IKSKGKLYAALNKVKES-NYSTQKIATSY--VPTT-AIPKSSSGIHPI--------PTTP 284
+++ G A++ + S N +A SY V T+ AI S +G+ P TT
Sbjct: 2193 VQANGTFSASVALQRLSGNAIVATVADSYGNVGTSPAIVDSYAGVLPKITGTITGQMTTS 2252
Query: 285 EASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTG 341
EASV S TI + G T IT + G + + S G+++ + + T TG
Sbjct: 2253 EASVHPFSTVTIEDLNVGATDTLTITLSGAGGILSGTGLSGSNGVYTLSGSASTITG 2309
>gi|427428070|ref|ZP_18918112.1| Ribonuclease III [Caenispirillum salinarum AK4]
gi|425882771|gb|EKV31450.1| Ribonuclease III [Caenispirillum salinarum AK4]
Length = 229
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G PLP Y++ G H P+F +V+V G+ + S RK AEQ A
Sbjct: 161 KTALQEWAQGQGKPLPAYETVETTGPAHDPRFVVAVTVQGIAPATGTGTSKRK-AEQMAA 219
Query: 134 KIALECISKK 143
+ L ++ +
Sbjct: 220 ETLLANVTGQ 229
>gi|86749730|ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2]
gi|86572758|gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2]
Length = 271
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G+P PVY+ G H P+FR +VS+ G+ + ++AAE+ A
Sbjct: 197 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVSLPGLD-PAEGVGGSKRAAEKVAA 255
Query: 134 KIAL 137
+ L
Sbjct: 256 SVML 259
>gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
Length = 270
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 22/120 (18%)
Query: 49 ATASASKSVTAPVVLT------PNRVPEHLM--------------HKNRLQEHAQRSGIP 88
A A A +S+T + L N + +H++ +K+RL E+ Q +P
Sbjct: 149 ALADAFESLTGAIYLDKGILAAENFIRKHVLEHENFRMIVEAEHNYKSRLIEYTQSRHLP 208
Query: 89 LPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE 147
+PVY E G +H +F VS + T +K AEQ AK AL I K+E
Sbjct: 209 MPVYSVLEECGAEHEKQFTVGVSCSD-RHLGSGTARRKKDAEQLAAKEALSIIDAAEKEE 267
>gi|336314846|ref|ZP_08569761.1| ribonuclease III [Rheinheimera sp. A13L]
gi|335880905|gb|EGM78789.1| ribonuclease III [Rheinheimera sp. A13L]
Length = 224
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K +LQE+ Q +PLP+Y+ + +G H F +V G + + S RK AEQD A
Sbjct: 155 KTQLQEYLQGRRLPLPLYEVIDTQGDDHDQIFTVRCTVQGRAPVTASGNSRRK-AEQDSA 213
Query: 134 KIALECISKKI 144
+I LE + +
Sbjct: 214 RILLEQVKNDL 224
>gi|367475465|ref|ZP_09474924.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 285]
gi|365272181|emb|CCD87392.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 285]
Length = 367
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 73 MHKNR---------LQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTF 122
MHK R LQE AQ G+P PVY+ G H P+FR +V + G+ +
Sbjct: 282 MHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLE-PAEGVG 340
Query: 123 SHRKAAEQDVAKIALE 138
++AAE+ A + +E
Sbjct: 341 GSKRAAEKVAASVMIE 356
>gi|99035124|ref|ZP_01314908.1| hypothetical protein Wendoof_01000254 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 234
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE Q++ +PLP Y+ + G H P+F SV ++ S S +K AEQ A
Sbjct: 163 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSA-CASSKKIAEQKAA 221
Query: 134 KIALECISK 142
++ LE I K
Sbjct: 222 ELMLEKIGK 230
>gi|42521037|ref|NP_966952.1| ribonuclease III [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225630900|ref|YP_002727691.1| ribonuclease III, putative [Wolbachia sp. wRi]
gi|225677311|ref|ZP_03788288.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|81652137|sp|Q73FT3.1|RNC_WOLPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807910|sp|C0R4Q8.1|RNC_WOLWR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|42410778|gb|AAS14886.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225590638|gb|EEH11888.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225592881|gb|ACN95900.1| ribonuclease III, putative [Wolbachia sp. wRi]
Length = 232
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE Q++ +PLP Y+ + G H P+F SV ++ S S +K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSA-CASSKKIAEQKAA 219
Query: 134 KIALECISK 142
++ LE I K
Sbjct: 220 ELMLEKIGK 228
>gi|58698421|ref|ZP_00373332.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
gi|58535076|gb|EAL59164.1| ribonuclease III, partial [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 232
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE Q++ +PLP Y+ + G H P+F SV ++ S S +K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSA-CASSKKIAEQKAA 219
Query: 134 KIALECISK 142
++ LE I K
Sbjct: 220 ELMLEKIEK 228
>gi|38229197|ref|NP_938290.1| 34L [Yaba monkey tumor virus]
gi|38000468|gb|AAR07391.1| 34L [Yaba monkey tumor virus]
Length = 184
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 161 SILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
+++NE+ + + T E+ P+F +S++ +G+ + E G +KKEA+ A++ +
Sbjct: 114 TVINEYCQLTSRDWSIEVTTAGESHCPIFTASVIISGIKFKPEIGNTKKEAKHKASKITM 173
Query: 221 RTLLVTS 227
+L +S
Sbjct: 174 EEILKSS 180
>gi|365898360|ref|ZP_09436321.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3843]
gi|365420885|emb|CCE08863.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3843]
Length = 284
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G+P PVY+ G H P+FR +V + G+ ++ ++AAE+ A
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLE-SAEGVGGSKRAAEKVAA 268
Query: 134 K--IALECISKKIKD 146
IA E +S D
Sbjct: 269 SVMIAREGVSGGSND 283
>gi|397491888|ref|XP_003816870.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein C17orf97
homolog [Pan paniscus]
Length = 383
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 271 PKSSSGIHPIP-------TTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAI 323
P + G HP P T PEA G H T PEA G HP P EA G HP A+
Sbjct: 269 PXALKGFHPDPKALKGFHTDPEALKGFH---TDPEALKGFHPDP---EAPKGFHPDPEAL 322
Query: 324 EVSTGMH 330
+ G H
Sbjct: 323 K---GFH 326
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.125 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,259,656,551
Number of Sequences: 23463169
Number of extensions: 266575146
Number of successful extensions: 1322441
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 1433
Number of HSP's that attempted gapping in prelim test: 1305216
Number of HSP's gapped (non-prelim): 14161
length of query: 420
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 275
effective length of database: 8,957,035,862
effective search space: 2463184862050
effective search space used: 2463184862050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 78 (34.7 bits)