BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014689
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 10/86 (11%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ +P PVY+ EG H F+++V +DGV Y S F +RKAAEQ
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 133 AKIAL----------ECISKKIKDEG 148
A++AL +C+S+ + + G
Sbjct: 78 AEVALRELAKSSELSQCVSQPVHETG 103
>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ +P PVY+ EG H F+++V +DGV Y S F +RKAAEQ
Sbjct: 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 133 AKIALECISK 142
A++AL ++K
Sbjct: 64 AEVALRELAK 73
>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV--FVSSLVFNGVTYTGEPGRSKKEA 211
+T CK++L E+A KMN +P Y ++ E L V F ++ G+ YTG R+KK+A
Sbjct: 4 HETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDA 63
Query: 212 EQLAARAVI 220
E A R +
Sbjct: 64 EISAGRTAL 72
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
KN LQE+AQ+ +P+YQ E +F +V + G+ YT T + +K AE
Sbjct: 10 KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT-KKDAEISAG 68
Query: 134 KIALECI 140
+ AL I
Sbjct: 69 RTALLAI 75
>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 158 FCKSILNEFAVKMNLELPAYSTRQSEALLPV--FVSSLVFNGVTYTGEPGRSKKEAEQLA 215
CK++L E+A KMN +P Y ++ E L V F ++ G+ YTG R+KK+AE A
Sbjct: 5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 64
Query: 216 ARAVI 220
R +
Sbjct: 65 GRTAL 69
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
H + KN LQE+AQ+ +P+YQ E +F +V + G+ YT T + +K AE
Sbjct: 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT-KKDAE 61
Query: 130 QDVAKIALECI 140
+ AL I
Sbjct: 62 ISAGRTALLAI 72
>pdb|1X47|A Chain A, Solution Structure Of Dsrm Domain In Dgcr8 Protein
Length = 98
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 53 ASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD 112
S + V+ PN E + L E+ QR PVY E + F ASV++D
Sbjct: 1 GSSGSSGEFVINPNGKSEVCI----LHEYMQRVLKVRPVYNFF-ECENPSEPFGASVTID 55
Query: 113 GVTYTSPNTFSHRKAAEQDVAKIALECI 140
GVTY S T S +K A+ A+ LE +
Sbjct: 56 GVTYGS-GTASSKKLAKNKAARATLEIL 82
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 162 ILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIR 221
IL+E+ ++ P Y+ + E F +S+ +GVTY SKK A+ AARA +
Sbjct: 21 ILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLE 80
Query: 222 TLL 224
L+
Sbjct: 81 ILI 83
>pdb|2YT4|A Chain A, Crystal Structure Of Human Dgcr8 Core
Length = 232
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 61 VVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPN 120
V+ PN E + L E+ QR PVY + E + F ASV++DGVTY S
Sbjct: 15 FVINPNGKSEVCI----LHEYMQRVLKVRPVY-NFFECENPSEPFGASVTIDGVTYGS-G 68
Query: 121 TFSHRKAAEQDVAKIALECI 140
T S +K A+ A+ LE +
Sbjct: 69 TASSKKLAKNKAARATLEIL 88
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 162 ILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIR 221
IL+E+ ++ P Y+ + E F +S+ +GVTY SKK A+ AARA +
Sbjct: 27 ILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLE 86
Query: 222 TLL 224
L+
Sbjct: 87 ILI 89
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 261 ATSYVPTTAIPKSSSG-IHPI-PTTPEA--SVGMHSIPTIPEATAGIHPTPAITE 311
+T +P AI G IHP+ P PE HS P+ T G+HP ITE
Sbjct: 316 STDQLPGGAIINGDWGKIHPVDPRDPEQVQEFVTHSWYKYPDETKGLHPWDGITE 370
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 188 VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 224
+FV + NG T GR+KKEAE+ AAR LL
Sbjct: 212 IFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLL 248
>pdb|2NZ2|A Chain A, Crystal Structure Of Human Argininosuccinate Synthase In
Complex With Aspartate And Citrulline
Length = 413
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 62 VLTPNRVPE---HLMHKNRLQEHAQRSGIPLPV 91
V+ P R+PE +N L E+A++ GIP+PV
Sbjct: 142 VIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPV 174
>pdb|1X48|A Chain A, Solution Structure Of The Second Dsrm Domain In
Interferon- Induced, Double-Stranded Rna-Activated
Protein Kinase
Length = 88
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 161 SILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
++N FA K L + + L F+ Y G +K+EA+QLAA+
Sbjct: 10 GLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAY 69
Query: 221 RTLL 224
+ LL
Sbjct: 70 QKLL 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.125 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,888,161
Number of Sequences: 62578
Number of extensions: 353644
Number of successful extensions: 788
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 21
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)