BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014689
(420 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 126/202 (62%), Gaps = 16/202 (7%)
Query: 71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR--KAA 128
H +K++LQE+ Q++ LP+Y + +G H KF+++V VDG ++S TF HR K A
Sbjct: 36 HCNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS--TFCHRRVKDA 93
Query: 129 EQDVAKIALECISKKIKDEG-----CPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE 183
EQD AK+A + + ++ + E LI+QD VF KSIL+E+ K + P YS ++E
Sbjct: 94 EQDAAKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTE 153
Query: 184 ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKL 243
+ +VSS+ F G TYTG R+KK+AEQ AARA +++LL T + T +++I++SK KL
Sbjct: 154 GSVTPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLAT--NYTSMAKIVRSKEKL 211
Query: 244 YAAL-----NKVKESNYSTQKI 260
A+ NK +SN + +K+
Sbjct: 212 IRAISPSGYNKGIDSNPTNKKL 233
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RK
Sbjct: 27 RVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86
Query: 127 AAEQDVAKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 185
AAEQ A++AL I K I + P + Q+T CK++L E+A KMN +P+Y +S +
Sbjct: 87 AAEQSAAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASG 145
Query: 186 LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
L F+ ++ G+ Y G R+KK+AE AAR + + S GSA ++ I GK
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Query: 67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
RV + K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RK
Sbjct: 27 RVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86
Query: 127 AAEQDVAKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 185
AAEQ A++AL I K I + P + Q+T CK++L E+A KMN +P+Y +S +
Sbjct: 87 AAEQSAAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASG 145
Query: 186 LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
L F+ ++ G+ Y G R+KK+AE AAR + + S GSA ++ I GK
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 12/210 (5%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQS 94
AP P P + +PA A+ + RV + K+RLQE+AQ++G+ P Y +
Sbjct: 6 APTPLPPETANTSPAPIGATAGI---------RVENCYVFKSRLQEYAQKAGLQTPEYHT 56
Query: 95 HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI-KDEGCPLIN 153
EG H P F+++V ++ +Y S FS+RKAAEQ A++AL I K I + P +
Sbjct: 57 SKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAV- 115
Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
Q+T CK++L E+A KMN +P+Y + + L F+ ++ G+ Y G R+KK+AE
Sbjct: 116 QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEI 175
Query: 214 LAARAVIRTLLVTS-GSATILSEIIKSKGK 242
AAR + + S GSA ++ I GK
Sbjct: 176 KAARTALLAIQGQSEGSANGATKYIVVPGK 205
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+ K+RLQE+AQ+ +P PVY+ EG H F+++V +DGV Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 133 AKIALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV- 188
A++AL ++K + C ++Q +T CK++L E+A KMN +P Y ++ E L V
Sbjct: 75 AEVALRELAKSSELSQC--VSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVT 132
Query: 189 -FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
F ++ G+ YTG R+KK+AE A R +
Sbjct: 133 QFTCTVEIGGIKYTGAATRTKKDAEISAGRTAL 165
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +SK+ + +T K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG PG++KK+A++ AA A L
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
A++AL +S + I +T K++L E A ++ LP Y+T R PVF
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG+P ++KK+AE+ AA A +L
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 133 AKIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
A+++L +S ++ K ++++ ++ K++L E A + L+LP Y S R P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIY-KNLLQETAHRAGLDLPMYTSVRSGSCHFPGF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TGE ++KK+AE+ AA A +L
Sbjct: 120 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 54 SKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG 113
SKS+TA ++ E ++KN LQE A R+G+ LP+Y S G H P F +V + G
Sbjct: 74 SKSLTAKIL------DETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAG 127
Query: 114 VTYTSPNTFSHRKAAEQDVAKIALECISK 142
+T+T + +K AE++ A A + K
Sbjct: 128 MTFTGESA-KTKKQAEKNAAIAAWSSLKK 155
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
A++AL +S K K ++++ ++ K++L E A + L+LP Y S R +P F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIY-KNLLQETAHRAGLDLPVYTSVRSGPGHIPTF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+++ GE ++KK+AE+ AA A +L
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL 153
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 25 CPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQR 84
C T QA+ A A + A ++ SKS+TA V+ E ++KN LQE A R
Sbjct: 50 CSTLRQAEHSAAEVA-----LSALSSKGPSKSLTARVL------DETGIYKNLLQETAHR 98
Query: 85 SGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142
+G+ LPVY S G H P F +V + G+++ + +K AE++ A A + K
Sbjct: 99 AGLDLPVYTSVRSGPGHIPTFSCTVELAGMSFNGESA-KTKKQAEKNAAIAAWFSLRK 155
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ P+ + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 133 AKIALECISKKIKDEGCP--LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
A++AL +S + ++++ V+ K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHSPVF 119
Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
S++ G+++ G+P ++KK AE+ AA A +L
Sbjct: 120 SSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 25 CPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQR 84
C T QA+ A A + ++ P S S+TA V+ E ++KN LQE A R
Sbjct: 50 CTTLRQAEHAAAEVALARLSLRGP-----SSSLTARVL------DETGVYKNLLQETAHR 98
Query: 85 SGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK-K 143
+G+ LPVY + G H+P F ++V + G+++ + +K AE++ A A + +
Sbjct: 99 AGLKLPVYTTVRSGPGHSPVFSSTVELAGMSFAG-DPAKTKKHAEKNAAMAAWSSLKQSN 157
Query: 144 IKDEGCPLI 152
I+ PL+
Sbjct: 158 IRTTVSPLV 166
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 160 KSILNEFAVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTG-EPGRSKKEAEQLAAR 217
K+ L E A + LP+Y TR+ P F +++ FNG T+ G + ++AE AA
Sbjct: 3 KNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAE 62
Query: 218 AVIRTLLVTSGSATILSEIIKSKG 241
+ L + S+++ + ++ G
Sbjct: 63 VALARLSLRGPSSSLTARVLDETG 86
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
+K++LQ +AQ+ G LP YQ+ EG HA +F++ V+VDG + SP F K AE A
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 134 KIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL-LPVFVS 191
K+AL + ++ E P+ + K++L E A K LP YST ++ +P+F S
Sbjct: 147 KLALMSLPQEASSSEQVPV---QPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIR 221
++VF ++ GEP +KK+AE AAR +
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQ 233
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR-KAAEQD 131
M+K+RLQE Q+ P Y G HAP F A+VSV+GV + +P + K A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
AK A + +S P + + KS L +A K LP+Y T R+ F
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSY-KSQLQIYAQKKGKLLPSYQTIREGPGHASRFK 119
Query: 191 SSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL 223
S + +G + E + KEAE AA+ + +L
Sbjct: 120 SVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 72 LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV-DGVTYTSP-NTFSHRKAAE 129
L +KN LQE AQ+ G LPVY + ++G P F+++V DG P NT +K AE
Sbjct: 168 LSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANT---KKQAE 224
Query: 130 QDVAKIALECISKKIKD 146
+ A++A + + K+
Sbjct: 225 MNAARVAFQHFEDRRKN 241
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH-RKAAEQD 131
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP F+ R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFV 190
+ I +T K++L E A ++ LP+Y+T +S LPVF
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ G+T+TG+P ++KK+AE+ AA A +L
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSL 153
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
++K +LQ +A + + LPVY + EG HAP+FR +V+ G T+ S F K+AE
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVS 191
AKIA+ ++ + EG V K++L E A K + LP Y+T S + P F S
Sbjct: 64 AKIAVASLTPQ-SPEGI------DVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 116
Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
++ F G ++GE ++KK AE AA+ ++
Sbjct: 117 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148
>sp|Q49537|VLPE_MYCHR Variant surface antigen E OS=Mycoplasma hyorhinis GN=vlpE PE=4 SV=1
Length = 243
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 41/93 (44%)
Query: 251 KESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAIT 310
KESN S + + P +S G H P+ P S G HS P+ P + G H P+
Sbjct: 148 KESNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNP 207
Query: 311 EASTGMHPTSAAIEVSTGMHSTAADSETSTGMN 343
S G H + S G HS ++ TS G N
Sbjct: 208 TTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQN 240
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 266 PTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEV 325
PTT+ PK S+ P+ P S G HS P+ P + G H P+ S G H +
Sbjct: 142 PTTSDPKESN-----PSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTT 196
Query: 326 STGMHSTAADSETSTGM 342
S G HS ++ TS G
Sbjct: 197 SDGQHSNPSNPTTSDGQ 213
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%)
Query: 251 KESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAIT 310
KESN S + + P +S G H P+ P S S P+ P + G H P+
Sbjct: 109 KESNPSNPTTSDPKESNPSNPTTSDGQHSNPSNPTTSDPKESNPSNPTTSDGQHSNPSNP 168
Query: 311 EASTGMHPTSAAIEVSTGMHSTAADSETSTGM 342
S G H + S G HS ++ TS G
Sbjct: 169 TTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQ 200
>sp|B8CQJ5|RNC_SHEPW Ribonuclease 3 OS=Shewanella piezotolerans (strain WP3 / JCM 13877)
GN=rnc PE=3 SV=1
Length = 225
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQEH Q+ PLP+Y+ H EG H F V+ + S R+ AEQ A
Sbjct: 157 KTLLQEHLQKFRKPLPIYKVVHTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAA 216
Query: 134 KIALECISK 142
LE I K
Sbjct: 217 AQVLELIKK 225
>sp|Q2SL32|RNC_HAHCH Ribonuclease 3 OS=Hahella chejuensis (strain KCTC 2396) GN=rnc PE=3
SV=1
Length = 226
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE+ Q + LP Y+ + +G HA F +DG++ + T S R+ AEQ A
Sbjct: 156 KTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAA 215
Query: 134 KIAL 137
K AL
Sbjct: 216 KQAL 219
>sp|A5ID21|RNC_LEGPC Ribonuclease 3 OS=Legionella pneumophila (strain Corby) GN=rnc PE=3
SV=1
Length = 224
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPE-HLMH-----KNRLQEHAQRSGIP 88
A A + A + +A+K + ++L +R+ + L H K +LQE Q S
Sbjct: 112 ADALEAILAAIYLDGGMTAAKQII--LMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFA 169
Query: 89 LPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
LP Y + EG +HA F + +++GV+ + T +R+ AEQ AK LE
Sbjct: 170 LPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLE 220
>sp|Q5X446|RNC_LEGPA Ribonuclease 3 OS=Legionella pneumophila (strain Paris) GN=rnc PE=3
SV=1
Length = 224
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPE-HLMH-----KNRLQEHAQRSGIP 88
A A + A + +A+K + ++L +R+ + L H K +LQE Q S
Sbjct: 112 ADALEAILAAIYLDGGMTAAKQII--LMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFA 169
Query: 89 LPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
LP Y + EG +HA F + +++GV+ + T +R+ AEQ AK LE
Sbjct: 170 LPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLE 220
>sp|Q5WVI4|RNC_LEGPL Ribonuclease 3 OS=Legionella pneumophila (strain Lens) GN=rnc PE=3
SV=1
Length = 224
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPE-HLMH-----KNRLQEHAQRSGIP 88
A A + A + +A+K + ++L +R+ + L H K +LQE Q S
Sbjct: 112 ADALEAILAAIYLDGGMTAAKQII--LMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFA 169
Query: 89 LPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
LP Y + EG +HA F + +++GV+ + T +R+ AEQ AK LE
Sbjct: 170 LPEYVLTKVEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLE 220
>sp|B0TIV7|RNC_SHEHH Ribonuclease 3 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rnc
PE=3 SV=1
Length = 225
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQEH Q+ PLPVY+ H EG H F V+ ++ S R+ AEQ A
Sbjct: 157 KTLLQEHLQKFRKPLPVYKVVHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 134 KIALECISK 142
LE + K
Sbjct: 217 AQVLELMKK 225
>sp|A1SSM8|RNC_PSYIN Ribonuclease 3 OS=Psychromonas ingrahamii (strain 37) GN=rnc PE=3
SV=1
Length = 228
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQEH Q PLP+Y+ +G H +F S S+DG+ S RK AEQ A
Sbjct: 159 KTRLQEHLQSRKQPLPIYEVLEIKGEAHNQRFTMSCSIDGLKSVQGQGTSRRK-AEQIAA 217
Query: 134 KIALECIS 141
L+ +S
Sbjct: 218 NKMLDSLS 225
>sp|A8H1C7|RNC_SHEPA Ribonuclease 3 OS=Shewanella pealeana (strain ATCC 700345 /
ANG-SQ1) GN=rnc PE=3 SV=1
Length = 225
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE+ Q+ PLPVY+ +H EG H F V+ ++ S R+ AEQ A
Sbjct: 157 KTLLQEYLQKYRKPLPVYRVAHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 134 KIALECISK 142
LE I K
Sbjct: 217 AQVLELIKK 225
>sp|Q5ZUD5|RNC_LEGPH Ribonuclease 3 OS=Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rnc PE=3 SV=1
Length = 224
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 35 APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPE-HLMH-----KNRLQEHAQRSGIP 88
A A + A + A+K + ++L +R+ + L H K +LQE Q S
Sbjct: 112 ADALEAILAAIYLDGGMIAAKQII--LMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFA 169
Query: 89 LPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE 138
LP Y + EG +HA F + +++GV+ + T +R+ AEQ AK LE
Sbjct: 170 LPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLE 220
>sp|B3CMS0|RNC_WOLPP Ribonuclease 3 OS=Wolbachia pipientis subsp. Culex pipiens (strain
wPip) GN=rnc PE=3 SV=1
Length = 230
Score = 39.3 bits (90), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASV---SVDGVTYTSPNTFSHRKAAEQ 130
K LQE QR+ +PLP Y+ + G H P+F SV S D V+ +P+ +K AEQ
Sbjct: 161 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCIESYDKVSACAPS----KKIAEQ 216
Query: 131 DVAKIALECISK 142
A++ LE I K
Sbjct: 217 KAAELILEKIKK 228
>sp|Q7VRR0|RNC_BLOFL Ribonuclease 3 OS=Blochmannia floridanus GN=rnc PE=3 SV=1
Length = 232
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE+ Q +PLP+Y + +G H F + V + Y+ S R+ AEQD A
Sbjct: 160 KTRLQEYLQHHHLPLPIYCINQVQGQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAA 219
Query: 134 KIALE 138
+ AL+
Sbjct: 220 ENALK 224
>sp|Q2GIW0|RNC_ANAPZ Ribonuclease 3 OS=Anaplasma phagocytophilum (strain HZ) GN=rnc PE=3
SV=1
Length = 236
Score = 38.5 bits (88), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ +P Y+ N+ G +HAP F V+V+G + T +K AE A
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHA--TGCKKKYAEIAAA 223
Query: 134 KIALECISKK 143
K+ LE ++K+
Sbjct: 224 KLMLEKVTKQ 233
>sp|C0R4Q8|RNC_WOLWR Ribonuclease 3 OS=Wolbachia sp. subsp. Drosophila simulans (strain
wRi) GN=rnc PE=3 SV=1
Length = 232
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE Q++ +PLP Y+ + G H P+F SV ++ S S +K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSA-CASSKKIAEQKAA 219
Query: 134 KIALECISK 142
++ LE I K
Sbjct: 220 ELMLEKIGK 228
>sp|Q73FT3|RNC_WOLPM Ribonuclease 3 OS=Wolbachia pipientis wMel GN=rnc PE=3 SV=1
Length = 232
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE Q++ +PLP Y+ + G H P+F SV ++ S S +K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSA-CASSKKIAEQKAA 219
Query: 134 KIALECISK 142
++ LE I K
Sbjct: 220 ELMLEKIGK 228
>sp|B8F3C7|RNC_HAEPS Ribonuclease 3 OS=Haemophilus parasuis serovar 5 (strain SH0165)
GN=rnc PE=3 SV=1
Length = 223
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE+ Q +PLP Y+ + +G H F+ S V+ V + R+ AEQD A
Sbjct: 154 KTRLQEYLQGRKLPLPTYEVIDIKGEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAA 213
>sp|Q6AFJ4|RNC_LEIXX Ribonuclease 3 OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=rnc
PE=3 SV=1
Length = 237
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 57 VTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTY 116
+ P++ P+R + K LQE A G PVY N G H+ F A+V V G+
Sbjct: 145 LIGPLLADPDRFGAAMDPKTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVT 204
Query: 117 TSPNTFSHRKA 127
S S ++A
Sbjct: 205 ASGEGTSKKQA 215
>sp|Q9PB98|RNC_XYLFA Ribonuclease 3 OS=Xylella fastidiosa (strain 9a5c) GN=rnc PE=3 SV=2
Length = 227
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE Q LPVY+ E G H FR S ++ + + S R+ AEQD A
Sbjct: 157 KTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAA 216
Query: 134 KIALE 138
A++
Sbjct: 217 SHAID 221
>sp|P51837|RNC_COXBU Ribonuclease 3 OS=Coxiella burnetii (strain RSA 493 / Nine Mile
phase I) GN=rnc PE=3 SV=2
Length = 233
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 135 IALECIS 141
LE +
Sbjct: 215 RFLELLD 221
>sp|A9N942|RNC_COXBR Ribonuclease 3 OS=Coxiella burnetii (strain RSA 331 / Henzerling
II) GN=rnc PE=3 SV=1
Length = 233
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 135 IALECIS 141
LE +
Sbjct: 215 RFLELLD 221
>sp|Q87C06|RNC_XYLFT Ribonuclease 3 OS=Xylella fastidiosa (strain Temecula1 / ATCC
700964) GN=rnc PE=3 SV=1
Length = 227
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE Q LPVY+ E G H FR S ++ + + S R+ AEQD A
Sbjct: 157 KTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAA 216
Query: 134 KIALE 138
A++
Sbjct: 217 SHAID 221
>sp|B2I604|RNC_XYLF2 Ribonuclease 3 OS=Xylella fastidiosa (strain M23) GN=rnc PE=3 SV=1
Length = 227
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE Q LPVY+ E G H FR S ++ + + S R+ AEQD A
Sbjct: 157 KTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAA 216
Query: 134 KIALE 138
A++
Sbjct: 217 SHAID 221
>sp|A9KFA0|RNC_COXBN Ribonuclease 3 OS=Coxiella burnetii (strain Dugway 5J108-111)
GN=rnc PE=3 SV=1
Length = 233
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 135 IALECIS 141
LE +
Sbjct: 215 RFLELLD 221
>sp|B6IYZ9|RNC_COXB2 Ribonuclease 3 OS=Coxiella burnetii (strain CbuG_Q212) GN=rnc PE=3
SV=1
Length = 233
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 135 IALECIS 141
LE +
Sbjct: 215 RFLELLD 221
>sp|B6J4J9|RNC_COXB1 Ribonuclease 3 OS=Coxiella burnetii (strain CbuK_Q154) GN=rnc PE=3
SV=1
Length = 233
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 135 IALECIS 141
LE +
Sbjct: 215 RFLELLD 221
>sp|Q5GTI3|RNC_WOLTR Ribonuclease 3 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS)
GN=rnc PE=3 SV=1
Length = 243
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVD--GVTYTSPNTFSHRKAAEQD 131
K LQE Q++ +PLP Y+ + G H+P+F S+ ++ G + S +K AEQ
Sbjct: 171 KTSLQEWTQKNKLPLPEYELMKQTGPAHSPEFTISICIENYGKVFACA---SSKKVAEQK 227
Query: 132 VAKIALECIS 141
A++ LE I+
Sbjct: 228 AAELMLEKIN 237
>sp|A9L5N6|RNC_SHEB9 Ribonuclease 3 OS=Shewanella baltica (strain OS195) GN=rnc PE=3
SV=1
Length = 226
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQEH Q PLP YQ N EG H F ++ ++ + S R+ AEQ A
Sbjct: 158 KTLLQEHLQGFKKPLPDYQVINIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAA 217
Query: 134 KIALECISK 142
LE + K
Sbjct: 218 AQVLELLKK 226
>sp|A3D1V6|RNC_SHEB5 Ribonuclease 3 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
GN=rnc PE=3 SV=1
Length = 226
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQEH Q PLP YQ N EG H F ++ ++ + S R+ AEQ A
Sbjct: 158 KTLLQEHLQGFKKPLPDYQVINIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAA 217
Query: 134 KIALECISK 142
LE + K
Sbjct: 218 AQVLELLKK 226
>sp|B8EBQ2|RNC_SHEB2 Ribonuclease 3 OS=Shewanella baltica (strain OS223) GN=rnc PE=3
SV=1
Length = 226
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQEH Q PLP YQ N EG H F ++ ++ + S R+ AEQ A
Sbjct: 158 KTLLQEHLQGFKKPLPDYQVINIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAA 217
Query: 134 KIALECISK 142
LE + K
Sbjct: 218 AQVLELLKK 226
>sp|O69161|RNC_BRAJA Ribonuclease 3 OS=Bradyrhizobium japonicum (strain USDA 110) GN=rnc
PE=3 SV=2
Length = 250
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 73 MHKNR---------LQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTF 122
MHK R LQE AQ G+P PVY+ G H P+FR +V + G+ +
Sbjct: 166 MHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLA-PAEGIG 224
Query: 123 SHRKAAEQDVAKIALE 138
++AAE+ A + +E
Sbjct: 225 GSKRAAEKVAASVMIE 240
>sp|A6WKQ7|RNC_SHEB8 Ribonuclease 3 OS=Shewanella baltica (strain OS185) GN=rnc PE=3
SV=1
Length = 226
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQEH Q PLP YQ N EG H F ++ ++ + S R+ AEQ A
Sbjct: 158 KTLLQEHLQGFKKPLPDYQVINIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAA 217
Query: 134 KIALECISK 142
LE + K
Sbjct: 218 AQVLELLKK 226
>sp|Q3SRB3|RNC_NITWN Ribonuclease 3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC
25391) GN=rnc PE=3 SV=1
Length = 266
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGV 114
K LQE AQ G+P PVY+ G H P+FR +V + G+
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPRFRVAVELPGL 238
>sp|A8I3B5|RNC_AZOC5 Ribonuclease 3 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=rnc PE=3 SV=1
Length = 235
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGV 114
K LQE AQ G+P PVY+ G HAP+FR +V + G+
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFRVAVDLPGL 202
>sp|B7VK79|RNC_VIBSL Ribonuclease 3 OS=Vibrio splendidus (strain LGP32) GN=rnc PE=3 SV=1
Length = 225
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 75 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K RLQE Q PLPVY N +G H +F V GV + R+ AEQ A
Sbjct: 156 KTRLQEFLQGRRNPLPVYTVTNIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAA 215
Query: 134 KIALECIS 141
+ ALE +S
Sbjct: 216 ETALEQLS 223
>sp|B4RCU4|RNC_PHEZH Ribonuclease 3 OS=Phenylobacterium zucineum (strain HLK1) GN=rnc
PE=3 SV=1
Length = 238
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 75 KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K +LQE Q G+PLP Y+ EG HAP F V V G S R+AAE+ A
Sbjct: 163 KTQLQEWVQGMGLPLPTYEIVSQEGPPHAPSFTVEVQVAGFGAERGEGRS-RQAAEKAAA 221
Query: 134 KIAL 137
+ L
Sbjct: 222 QCML 225
>sp|Q52698|RNC_RHOCA Ribonuclease 3 OS=Rhodobacter capsulatus GN=rnc PE=1 SV=1
Length = 228
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 75 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
K LQE AQ G+P P Y++ +G HAP+FR +V + S R AEQ A
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVLASGETEEAQAGSKRN-AEQAAA 217
Query: 134 KIALECISK 142
K LE + +
Sbjct: 218 KALLERLER 226
>sp|A8AWC2|RNC_STRGC Ribonuclease 3 OS=Streptococcus gordonii (strain Challis / ATCC
35105 / CH1 / DL1 / V288) GN=rnc PE=3 SV=1
Length = 232
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 74 HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
+K +LQE Q +G +YQ +E G HA F SVSVDG S +K AEQ+
Sbjct: 161 YKTKLQELLQSNGDVEILYQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRS-KKLAEQEA 219
Query: 133 AKIALE 138
AK A E
Sbjct: 220 AKNAFE 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,731,925
Number of Sequences: 539616
Number of extensions: 6264623
Number of successful extensions: 28182
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 417
Number of HSP's that attempted gapping in prelim test: 25823
Number of HSP's gapped (non-prelim): 2080
length of query: 420
length of database: 191,569,459
effective HSP length: 120
effective length of query: 300
effective length of database: 126,815,539
effective search space: 38044661700
effective search space used: 38044661700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)