Query 014689
Match_columns 420
No_of_seqs 276 out of 1908
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3732 Staufen and related do 99.9 1.1E-24 2.4E-29 216.7 19.5 152 72-227 38-213 (339)
2 cd00048 DSRM Double-stranded R 99.6 8.1E-15 1.8E-19 111.4 9.3 66 158-223 1-68 (68)
3 PHA02701 ORF020 dsRNA-binding 99.6 7.5E-15 1.6E-19 136.7 8.9 72 70-143 106-178 (183)
4 PHA02701 ORF020 dsRNA-binding 99.6 1.4E-14 3.1E-19 134.8 10.1 73 155-228 106-180 (183)
5 smart00358 DSRM Double-strande 99.6 2.2E-14 4.7E-19 109.5 8.9 64 159-223 1-66 (67)
6 cd00048 DSRM Double-stranded R 99.5 2.3E-14 5E-19 108.9 8.5 67 73-140 1-68 (68)
7 PF00035 dsrm: Double-stranded 99.5 4.7E-14 1E-18 108.2 8.8 65 159-223 1-67 (67)
8 smart00358 DSRM Double-strande 99.5 4.5E-14 9.7E-19 107.7 8.3 65 74-140 1-66 (67)
9 PHA03103 double-strand RNA-bin 99.5 5.3E-14 1.2E-18 131.3 9.0 72 69-142 106-177 (183)
10 PHA03103 double-strand RNA-bin 99.5 1.1E-13 2.3E-18 129.3 10.0 74 153-227 105-179 (183)
11 PF00035 dsrm: Double-stranded 99.5 1.3E-13 2.8E-18 105.8 7.7 66 74-140 1-67 (67)
12 PRK12371 ribonuclease III; Rev 99.5 1.6E-13 3.4E-18 132.4 9.4 72 71-143 160-232 (235)
13 KOG3732 Staufen and related do 99.5 4E-14 8.7E-19 141.7 4.9 158 68-228 138-337 (339)
14 PRK12371 ribonuclease III; Rev 99.4 5.1E-13 1.1E-17 128.9 10.1 71 155-225 159-231 (235)
15 COG0571 Rnc dsRNA-specific rib 99.4 8.4E-13 1.8E-17 127.8 9.1 75 68-143 157-232 (235)
16 PRK14718 ribonuclease III; Pro 99.4 8E-13 1.7E-17 137.2 7.9 73 71-144 150-224 (467)
17 COG0571 Rnc dsRNA-specific rib 99.3 3.7E-12 8.1E-17 123.3 9.6 71 157-227 161-233 (235)
18 PRK14718 ribonuclease III; Pro 99.3 4.2E-12 9.1E-17 131.9 9.6 71 156-226 150-223 (467)
19 PRK12372 ribonuclease III; Rev 99.3 4E-12 8.7E-17 131.0 8.9 73 71-144 150-224 (413)
20 PRK12372 ribonuclease III; Rev 99.3 1E-11 2.2E-16 128.0 10.0 72 156-227 150-224 (413)
21 PRK00102 rnc ribonuclease III; 99.2 1.8E-11 3.8E-16 115.8 8.8 73 69-142 155-228 (229)
22 PRK00102 rnc ribonuclease III; 99.2 2.8E-11 6.1E-16 114.5 10.1 71 155-225 156-228 (229)
23 PF14709 DND1_DSRM: double str 99.2 2.8E-11 6.1E-16 99.1 7.7 70 72-141 1-80 (80)
24 TIGR02191 RNaseIII ribonucleas 99.2 3.7E-11 8E-16 112.7 8.1 70 70-140 150-220 (220)
25 TIGR02191 RNaseIII ribonucleas 99.2 6.4E-11 1.4E-15 111.1 9.2 69 155-223 150-220 (220)
26 PF14709 DND1_DSRM: double str 99.1 1.3E-10 2.8E-15 95.2 7.1 67 158-224 2-80 (80)
27 KOG2777 tRNA-specific adenosin 99.1 5.8E-10 1.3E-14 118.3 11.1 125 90-227 10-156 (542)
28 KOG4334 Uncharacterized conser 99.0 1.8E-09 4E-14 112.6 9.5 185 45-234 335-568 (650)
29 KOG1817 Ribonuclease [RNA proc 98.1 8.5E-06 1.8E-10 84.9 8.6 72 70-142 425-503 (533)
30 KOG1817 Ribonuclease [RNA proc 98.0 1.9E-05 4.1E-10 82.4 9.3 75 152-226 422-504 (533)
31 KOG4334 Uncharacterized conser 98.0 3.6E-06 7.8E-11 88.6 3.9 74 153-226 371-444 (650)
32 KOG2777 tRNA-specific adenosin 97.9 3E-05 6.6E-10 83.0 9.1 69 71-146 89-158 (542)
33 KOG0921 Dosage compensation co 97.7 5.7E-05 1.2E-09 84.6 6.4 151 73-225 2-240 (1282)
34 KOG3769 Ribonuclease III domai 97.2 0.00049 1.1E-08 69.2 4.9 71 158-228 233-306 (333)
35 KOG3769 Ribonuclease III domai 96.9 0.0011 2.4E-08 66.7 5.1 78 66-144 226-305 (333)
36 KOG3792 Transcription factor N 96.9 0.00086 1.9E-08 73.6 4.6 131 91-226 387-572 (816)
37 PF03368 Dicer_dimer: Dicer di 96.7 0.0069 1.5E-07 50.6 7.4 66 160-228 2-76 (90)
38 PF03368 Dicer_dimer: Dicer di 95.2 0.046 1E-06 45.7 5.8 68 75-146 2-77 (90)
39 PF14954 LIX1: Limb expression 95.0 0.12 2.6E-06 50.4 8.6 81 156-238 20-111 (252)
40 KOG2334 tRNA-dihydrouridine sy 92.2 0.068 1.5E-06 56.4 1.6 83 59-144 361-444 (477)
41 KOG0921 Dosage compensation co 90.6 0.34 7.3E-06 55.6 4.9 67 158-225 2-70 (1282)
42 PF14954 LIX1: Limb expression 90.0 0.81 1.8E-05 44.8 6.4 67 70-139 19-94 (252)
43 KOG2334 tRNA-dihydrouridine sy 86.6 0.33 7.2E-06 51.5 1.5 68 157-226 375-443 (477)
44 KOG3792 Transcription factor N 76.2 2.8 6E-05 47.2 3.9 65 70-141 504-570 (816)
45 cd04518 TBP_archaea archaeal T 55.0 1.9E+02 0.0041 27.3 11.7 116 102-224 45-172 (174)
46 cd04516 TBP_eukaryotes eukaryo 53.6 1.6E+02 0.0035 27.7 10.4 109 101-214 44-163 (174)
47 cd04517 TLF TBP-like factors ( 52.3 1.9E+02 0.0042 27.1 10.7 130 78-215 20-165 (174)
48 cd00652 TBP_TLF TATA box bindi 41.6 3E+02 0.0065 25.7 10.7 116 102-223 45-172 (174)
49 PF02169 LPP20: LPP20 lipoprot 40.0 40 0.00087 27.1 3.7 29 198-226 13-41 (92)
50 PLN00062 TATA-box-binding prot 35.4 3.9E+02 0.0085 25.3 10.1 108 102-214 45-163 (179)
51 PRK00394 transcription factor; 33.4 4.2E+02 0.0091 25.0 11.2 118 102-224 44-173 (179)
52 PF14657 Integrase_AP2: AP2-li 30.3 1.5E+02 0.0032 21.5 5.0 19 122-141 24-42 (46)
53 KOG0701 dsRNA-specific nucleas 28.8 62 0.0013 40.1 4.2 70 158-227 1515-1600(1606)
54 KOG2422 Uncharacterized conser 23.5 38 0.00082 37.9 1.1 31 370-400 73-106 (665)
55 COG1944 Uncharacterized conser 20.5 3.1E+02 0.0067 29.4 7.1 67 159-227 19-88 (398)
No 1
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.93 E-value=1.1e-24 Score=216.70 Aligned_cols=152 Identities=26% Similarity=0.239 Sum_probs=131.8
Q ss_pred CChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCCCC-
Q 014689 72 LMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGC- 149 (420)
Q Consensus 72 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E~l- 149 (420)
+.+++.|||||.+.+.. |.|++.+ +||.|++.|+++|.|+... +.| .|+|||.|||.||..+|..|....+....
T Consensus 38 KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg~~~-a~G-eG~sKK~AKh~AA~~~L~~lk~l~~l~~v~ 114 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVGEIT-ATG-EGKSKKLAKHRAAEALLKELKKLPPLANVR 114 (339)
T ss_pred CChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEeeeE-Eec-CCCchhHHHHHHHHHHHHHHhcCCCccccc
Confidence 89999999999999984 6999999 8999999999999999654 455 59999999999999999999987754210
Q ss_pred -----------CC--C-------CCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecC
Q 014689 150 -----------PL--I-------NQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRS 207 (420)
Q Consensus 150 -----------p~--~-------~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~S 207 (420)
+. . .....|++++||||||+++|..|.|+++.+ .+|.+.|++.|.|++. ...|.|.|
T Consensus 115 k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~s 193 (339)
T KOG3732|consen 115 KDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPS 193 (339)
T ss_pred cCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecce-eeecCCch
Confidence 00 0 123569999999999999999999999988 6999999999999984 56799999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 014689 208 KKEAEQLAARAVIRTLLVTS 227 (420)
Q Consensus 208 KK~AKq~AA~~AL~~L~~~s 227 (420)
||.||++||.+||+.|.-..
T Consensus 194 KKiAKRnAAeamLe~l~~~~ 213 (339)
T KOG3732|consen 194 KKIAKRNAAEAMLESLGFVK 213 (339)
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 99999999999999998544
No 2
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.59 E-value=8.1e-15 Score=111.44 Aligned_cols=66 Identities=36% Similarity=0.412 Sum_probs=60.7
Q ss_pred ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689 158 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223 (420)
Q Consensus 158 n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L 223 (420)
|||+.|+||||++++..|.|++... ++|.+.|+|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6899999999999998899999654 67889999999999988889999999999999999999875
No 3
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.56 E-value=7.5e-15 Score=136.66 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=66.1
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689 70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 143 (420)
Q Consensus 70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~ 143 (420)
...|||+.||||||+++..+ .|.++. +||+|.+.|+++|.|+|..++.| .|+|||+|||+||+.||+.|...
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA-SGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999888 898877 79999999999999999999987 59999999999999999998653
No 4
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.56 E-value=1.4e-14 Score=134.80 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=67.3
Q ss_pred CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689 155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG 228 (420)
Q Consensus 155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~ 228 (420)
...|||+.||||||+++..+ .|.++.+ ++|.+.|+++|.|+|..++.|.|+|||+|||+||+.||..|..++.
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~~ 180 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINNCG 180 (183)
T ss_pred CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Confidence 35699999999999999988 8988765 7999999999999999999999999999999999999999987764
No 5
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.55 E-value=2.2e-14 Score=109.48 Aligned_cols=64 Identities=38% Similarity=0.443 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689 159 CKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223 (420)
Q Consensus 159 ~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L 223 (420)
||+.|+||||++++ .|.|++... ++|.+.|+|+|.|+|+.++.|.|.|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 58999999999999 689999863 68899999999999988899999999999999999999887
No 6
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.54 E-value=2.3e-14 Score=108.92 Aligned_cols=67 Identities=40% Similarity=0.523 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689 73 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI 140 (420)
Q Consensus 73 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L 140 (420)
|||+.|+||||++++..|.|++.. .|+.|.+.|+|.|.|+|..++.| .|+|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEG-EGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHhC
Confidence 789999999999988899999966 89999999999999999777776 59999999999999999865
No 7
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.52 E-value=4.7e-14 Score=108.22 Aligned_cols=65 Identities=34% Similarity=0.492 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHcCCCCCcEEEeec-CCCC-CeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689 159 CKSILNEFAVKMNLELPAYSTRQS-EALL-PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223 (420)
Q Consensus 159 ~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~-~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L 223 (420)
||+.|+|||+++++.++.|..... ++|. +.|.|+|.|+|..++.|.|+|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 689999999999988754444444 4554 7999999999999999999999999999999999987
No 8
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.52 E-value=4.5e-14 Score=107.73 Aligned_cols=65 Identities=38% Similarity=0.497 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689 74 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI 140 (420)
Q Consensus 74 pKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L 140 (420)
||+.|+||||++++ .|.|++.. .|+.|.+.|+|.|.|+|..++.| .|.|||+||++||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEG-EGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHhc
Confidence 68999999999999 78999987 79999999999999999888876 59999999999999999876
No 9
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.50 E-value=5.3e-14 Score=131.32 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=63.6
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689 69 PEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142 (420)
Q Consensus 69 ~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~ 142 (420)
...+|||+.||||||+++... .|.+...||+|.++|++.|.|+|..|++| .|+|||+|||+||+.||..|..
T Consensus 106 ~K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 106 WKDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPA-IGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred cccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence 356789999999999998875 55544489999999999999999999987 5999999999999999999865
No 10
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.49 E-value=1.1e-13 Score=129.33 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=64.1
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689 153 NQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 227 (420)
Q Consensus 153 ~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s 227 (420)
+-...|||+.||||||+++... .|.+... ++|.+.|+++|.|+|+.+++|.|+|||+|||+||+.||..|....
T Consensus 105 d~K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~ 179 (183)
T PHA03103 105 SWKDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNYV 179 (183)
T ss_pred ccccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhcc
Confidence 3345689999999999999885 4443333 799999999999999999999999999999999999999997765
No 11
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.47 E-value=1.3e-13 Score=105.78 Aligned_cols=66 Identities=38% Similarity=0.544 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCCCCeEEEeccCCCCC-CeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689 74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI 140 (420)
Q Consensus 74 pKS~LQE~cQK~g~~lP~Yev~~eGP~H~-p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L 140 (420)
||+.|+|||+++++.++.|.+...|+.|. +.|.|+|+|+|..++.| .|+|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEG-EGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEe-ccCCHHHHHHHHHHHHHHhC
Confidence 68999999999998877666666665555 89999999999999877 59999999999999999986
No 12
>PRK12371 ribonuclease III; Reviewed
Probab=99.46 E-value=1.6e-13 Score=132.45 Aligned_cols=72 Identities=31% Similarity=0.300 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689 71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 143 (420)
Q Consensus 71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~ 143 (420)
..|||+.||||||+++...|.|.++. +||+|.+.|+|+|+++|..+++| .|+|||+||++||+.||+.|...
T Consensus 160 ~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g-~G~sKK~Ae~~AA~~al~~~~~~ 232 (235)
T PRK12371 160 RRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETG-EGRSKRAAEQVAAEKMLEREGVW 232 (235)
T ss_pred cCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHhhhh
Confidence 46999999999999988899999887 79999999999999999999887 59999999999999999998653
No 13
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.46 E-value=4e-14 Score=141.72 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=120.4
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD 146 (420)
Q Consensus 68 l~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~ 146 (420)
++...||+++||||||+++|.+|.|+++. .|..|.+.|++.|.+++..- .| .|.|||.||++||.+||..|....+.
T Consensus 138 ~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~-~G-kG~sKKiAKRnAAeamLe~l~~~~~~ 215 (339)
T KOG3732|consen 138 YGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTE-EG-KGPSKKIAKRNAAEAMLESLGFVKPN 215 (339)
T ss_pred cccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceee-ec-CCchHHHHHHHHHHHHHHHhccCCCC
Confidence 34578999999999999999999999999 79999999999999998653 44 69999999999999999999854421
Q ss_pred -----------C-------CCCC---------------------CCCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCC
Q 014689 147 -----------E-------GCPL---------------------INQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLP 187 (420)
Q Consensus 147 -----------E-------~lp~---------------------~~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~ 187 (420)
+ ++.. ......+|...|++......+.. .|.+.....-..
T Consensus 216 ~~p~~~~~~~~~p~~~~~~~~~~~s~~~s~~eel~~~k~~~~~~~~~~~~~~~~~~~~~~~e~~f~~-~y~d~~~~t~sg 294 (339)
T KOG3732|consen 216 KTPENLKVSLLKPASGRALGCSDKSLDNSEGEELSRLKACLKVIFNSAGLAYIKLLSEIAPENQFTV-TYPDIEELTLSG 294 (339)
T ss_pred cCcccccccccccccCcCCccCccccccchhhhhhhhhhhhhhccccccccccccccccccccchhe-ecchhHHhhhhh
Confidence 0 0100 01112356667777666666665 666555434556
Q ss_pred eEEEEEEECCEEee--eeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689 188 VFVSSLVFNGVTYT--GEPGRSKKEAEQLAARAVIRTLLVTSG 228 (420)
Q Consensus 188 ~F~~~V~I~Gk~~~--~G~G~SKK~AKq~AA~~AL~~L~~~s~ 228 (420)
.|.|.|..++...+ .|.+.+-+.|...||+.+|++|..+.+
T Consensus 295 ~~~~~~e~s~~~~~~~~~s~~t~~~s~~~aa~~~L~yL~~~~~ 337 (339)
T KOG3732|consen 295 QNQCLVELSTSPATVCHGSSITPPSAQSEAAHNALEYLKIMAG 337 (339)
T ss_pred HHHHHHHhcCCCceeeeccCCCCCcccchhHHHHHHHHHHHhc
Confidence 77888877764443 378899999999999999999987653
No 14
>PRK12371 ribonuclease III; Reviewed
Probab=99.43 E-value=5.1e-13 Score=128.93 Aligned_cols=71 Identities=27% Similarity=0.254 Sum_probs=65.5
Q ss_pred CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689 155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 225 (420)
Q Consensus 155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~ 225 (420)
...|||+.||||||+++...|.|.++.. ++|.+.|+|+|.|+|..+++|.|+|||+||+.||+.||+.|..
T Consensus 159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 3469999999999999998899998765 7899999999999999999999999999999999999999864
No 15
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.39 E-value=8.4e-13 Score=127.77 Aligned_cols=75 Identities=33% Similarity=0.374 Sum_probs=69.4
Q ss_pred CCCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689 68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 143 (420)
Q Consensus 68 l~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~ 143 (420)
....+|||+.||||||+++..+|.|.++. +|++|++.|++.|.++|..++.| .|+|||+|||.||+.||..|...
T Consensus 157 ~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G-~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 157 GDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTG-KGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEe-cccCHHHHHHHHHHHHHHHhccc
Confidence 34458999999999999999999999999 79999999999999999999988 59999999999999999998754
No 16
>PRK14718 ribonuclease III; Provisional
Probab=99.37 E-value=8e-13 Score=137.16 Aligned_cols=73 Identities=32% Similarity=0.327 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEE-eecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689 71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVT-YTSPNTFSHRKAAEQDVAKIALECISKKI 144 (420)
Q Consensus 71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~-~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~ 144 (420)
.+|||+.||||||++++.+|+|.++. +||+|++.|++.|+|+|.. ++.| .|+|||+|||+||+.||+.|....
T Consensus 150 ~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G-~G~SKKeAEQ~AAk~AL~kL~~~~ 224 (467)
T PRK14718 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSG-SGASRRAAEQAAAKKALDEVTAVA 224 (467)
T ss_pred ccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEE-EcCCHHHHHHHHHHHHHHHhcccc
Confidence 57999999999999999999999987 8999999999999999954 4666 599999999999999999998543
No 17
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.34 E-value=3.7e-12 Score=123.32 Aligned_cols=71 Identities=32% Similarity=0.319 Sum_probs=67.1
Q ss_pred CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689 157 VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 227 (420)
Q Consensus 157 ~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s 227 (420)
.|||+.||||||+++..+|.|.++.. ++|++.|++.|.++|..+++|.|+|||+|||.||+.||..|....
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~~ 233 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVKE 233 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcccc
Confidence 68999999999999999999999887 789999999999999999999999999999999999999997543
No 18
>PRK14718 ribonuclease III; Provisional
Probab=99.32 E-value=4.2e-12 Score=131.85 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=64.7
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEE-eeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689 156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVT-YTGEPGRSKKEAEQLAARAVIRTLLVT 226 (420)
Q Consensus 156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~-~~~G~G~SKK~AKq~AA~~AL~~L~~~ 226 (420)
..|||+.||||||++++..|.|.++.+ ++|++.|++.|.|+|.. ++.|.|.|||+|||.||+.||+.|...
T Consensus 150 ~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~ 223 (467)
T PRK14718 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAV 223 (467)
T ss_pred ccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 459999999999999999999999865 79999999999999954 478999999999999999999999743
No 19
>PRK12372 ribonuclease III; Reviewed
Probab=99.32 E-value=4e-12 Score=130.97 Aligned_cols=73 Identities=32% Similarity=0.320 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCE-EeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689 71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGV-TYTSPNTFSHRKAAEQDVAKIALECISKKI 144 (420)
Q Consensus 71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~-~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~ 144 (420)
.+|||+.||||||++++.+|+|.++. .|++|++.|++.|+|+|. .++.| .|.|||+|||+||+.||+.|....
T Consensus 150 ~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G-~G~SKKeAEQ~AAr~AL~kL~~~~ 224 (413)
T PRK12372 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSG-SGASRRAAEQAAAKKALDEVMAAA 224 (413)
T ss_pred cCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEE-EeCCHHHHHHHHHHHHHHHHhccc
Confidence 57999999999999999999999887 899999999999999985 44666 599999999999999999998543
No 20
>PRK12372 ribonuclease III; Reviewed
Probab=99.29 E-value=1e-11 Score=127.97 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=65.1
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCE-EeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689 156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLLVTS 227 (420)
Q Consensus 156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk-~~~~G~G~SKK~AKq~AA~~AL~~L~~~s 227 (420)
..|||+.||||||++++..|.|.++.+ ++|++.|+|.|.|+|. .++.|.|.|||+|||.||+.||+.|....
T Consensus 150 ~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~~~ 224 (413)
T PRK12372 150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAAA 224 (413)
T ss_pred cCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhccc
Confidence 458999999999999999999998865 7999999999999985 45789999999999999999999998544
No 21
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.25 E-value=1.8e-11 Score=115.83 Aligned_cols=73 Identities=38% Similarity=0.439 Sum_probs=67.1
Q ss_pred CCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689 69 PEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142 (420)
Q Consensus 69 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~ 142 (420)
....|||+.|+||||++++..|.|.++. +|+.|.+.|+|+|+++|..++.| .|.|||+||++||+.||+.|..
T Consensus 155 ~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 155 DLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEG-TGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred cccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhh
Confidence 3467999999999999999999999877 79999999999999999999987 5999999999999999999864
No 22
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.25 E-value=2.8e-11 Score=114.45 Aligned_cols=71 Identities=31% Similarity=0.307 Sum_probs=65.3
Q ss_pred CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689 155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 225 (420)
Q Consensus 155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~ 225 (420)
...|||+.|+||||++++..|.|.++.. +.|.+.|+|+|.++|..+++|.|.|||+||+.||+.||+.|+.
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 3468999999999999999999998765 5788999999999999999999999999999999999999864
No 23
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.23 E-value=2.8e-11 Score=99.14 Aligned_cols=70 Identities=26% Similarity=0.348 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEee---------cCCccccchHHHHHHHHHHHHHHH
Q 014689 72 LMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYT---------SPNTFSHRKAAEQDVAKIALECIS 141 (420)
Q Consensus 72 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~---------~Gg~GsSKKeAEq~AAk~AL~~L~ 141 (420)
+++++.|+|+|++++|+.|.|++.. .||+|.+.|++.|.|.+..+. .+..-.+||+|+..||+.+|..|+
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999987 799999999999999987662 112357999999999999999873
No 24
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.20 E-value=3.7e-11 Score=112.69 Aligned_cols=70 Identities=41% Similarity=0.498 Sum_probs=64.7
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689 70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI 140 (420)
Q Consensus 70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L 140 (420)
...|||+.|+||||++++..|.|++.. .|+.|.+.|.|.|+++|..++.|. |.|||+||++||+.||+.|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~-g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGK-GKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHhC
Confidence 568999999999999998889999987 699999999999999999999874 9999999999999999865
No 25
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.19 E-value=6.4e-11 Score=111.06 Aligned_cols=69 Identities=33% Similarity=0.374 Sum_probs=63.2
Q ss_pred CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689 155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223 (420)
Q Consensus 155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L 223 (420)
...|||+.|+||||++++..|.|+++.. +.|.+.|.|.|.++|+.+++|.|.|||+||+.||+.||+.|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 4569999999999999998899998755 57889999999999999999999999999999999999865
No 26
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.13 E-value=1.3e-10 Score=95.22 Aligned_cols=67 Identities=28% Similarity=0.408 Sum_probs=58.3
Q ss_pred ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEee---------e-eeecCHHHHHHHHHHHHHHHHH
Q 014689 158 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYT---------G-EPGRSKKEAEQLAARAVIRTLL 224 (420)
Q Consensus 158 n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~---------~-G~G~SKK~AKq~AA~~AL~~L~ 224 (420)
+.++.|+|+|++++|..|.|++..+ |+|...|.+.|.|.+..+. . --..+||+||..||+.+|..|+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999864 7999999999999986552 1 2358999999999999999874
No 27
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.07 E-value=5.8e-10 Score=118.33 Aligned_cols=125 Identities=33% Similarity=0.385 Sum_probs=102.6
Q ss_pred CeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC-------CC----CC-------
Q 014689 90 PVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD-------EG----CP------- 150 (420)
Q Consensus 90 P~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~-------E~----lp------- 150 (420)
+.|.... .||.|.+.|.+.|.|+|..+- ||.|+..||+.+++.+...... ++ +.
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF 82 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence 5677666 799999999999999997642 9999999999999998876533 11 10
Q ss_pred -CCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689 151 -LINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 227 (420)
Q Consensus 151 -~~~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s 227 (420)
.......|+++.|+||++ -+.|++... +.|.+.|.|.|.|||+.|..| |.|||+||+.||..||+.|....
T Consensus 83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 011225699999999998 347888766 789999999999999999888 99999999999999999997643
No 28
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.97 E-value=1.8e-09 Score=112.64 Aligned_cols=185 Identities=22% Similarity=0.202 Sum_probs=128.2
Q ss_pred cCCCCCccccccccccccc-------CCC------CCCCCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEE
Q 014689 45 VQAPATASASKSVTAPVVL-------TPN------RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV 111 (420)
Q Consensus 45 ~~~pa~~~ask~~t~p~il-------~~~------~l~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V 111 (420)
..+|..+..++.++.++.. ++. -.+.++..++.|+||+|+....+|.|++.. ...+...|...|.+
T Consensus 335 ~~rP~lp~~~kli~~~Vq~~a~e~~~~p~~~ke~~~npngks~vCiLhEy~q~~lk~~pvyef~e-~~n~stpysa~v~~ 413 (650)
T KOG4334|consen 335 LLRPMLPTTVKLINEFVQRLAKEIEDTPNIHKEYKANPNGKSKVCILHEYAQQCLKSLPVYEFAE-NDNNSTPYSAGVLP 413 (650)
T ss_pred hhCCCCcchhHHHHHHHHHhhcccccCCCccCceeeCCCCceeeehHHHHHHHHhhhcceeehhh-ccCCCCcccccccc
Confidence 3456666666666666652 121 123467889999999999998999998765 23456789999999
Q ss_pred CCEEeecCCccccchHHHHHHHHHHHHHHHhccc-------C---C-------CCCCCC----CC-----------CCCh
Q 014689 112 DGVTYTSPNTFSHRKAAEQDVAKIALECISKKIK-------D---E-------GCPLIN----QD-----------TVFC 159 (420)
Q Consensus 112 ~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~-------~---E-------~lp~~~----e~-----------~~n~ 159 (420)
|+..||+| .|.|||.|+..||+.+|+.|.-.-. + + .+.+.+ ++ -.++
T Consensus 414 d~~~yGsG-~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psP 492 (650)
T KOG4334|consen 414 DLFPYGSG-VGASKKTAKLVAARDTLEILIPDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSP 492 (650)
T ss_pred cccccccc-cccchHHHHHHHHHHHHHHhcchhhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCH
Confidence 99999998 5999999999999999999864321 1 0 010000 00 1256
Q ss_pred hHHHHHHHHHcC-CC-C-CcEEEeecCCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh-cCchHHHH
Q 014689 160 KSILNEFAVKMN-LE-L-PAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT-SGSATILS 234 (420)
Q Consensus 160 Ks~LqE~cQk~~-~~-l-P~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~-s~~~~~l~ 234 (420)
-.+|.+..+++. |. + -.++++........|++.| |+....|.+++|+++||.|.++.|+.|... ..||.+|.
T Consensus 493 y~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~---Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLr 568 (650)
T KOG4334|consen 493 YNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMIL---GKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLR 568 (650)
T ss_pred HHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeee---ccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHH
Confidence 678888777653 42 1 1233333334445688877 777778999999999999999999999754 35665544
No 29
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.12 E-value=8.5e-06 Score=84.89 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHcCC------CCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689 70 EHLMHKNRLQEHAQRSGI------PLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 142 (420)
Q Consensus 70 ~~~npKS~LQE~cQK~g~------~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~ 142 (420)
.-.|+|+.||.||..... .+|.|.+.. .||.+++.|.+.|+++|..+++| .|++.|+|+..||+.||+.+..
T Consensus 425 ~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~-~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 425 DWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATG-VGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred hccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeec-cCchHhHHHHHHHHHHHHHHHh
Confidence 347899999999998654 367888877 89999999999999999999998 5999999999999999999885
No 30
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.04 E-value=1.9e-05 Score=82.40 Aligned_cols=75 Identities=24% Similarity=0.240 Sum_probs=65.6
Q ss_pred CCCCCCChhHHHHHHHHHcCCC------CCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689 152 INQDTVFCKSILNEFAVKMNLE------LPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223 (420)
Q Consensus 152 ~~e~~~n~Ks~LqE~cQk~~~~------lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L 223 (420)
.+++..++++.||.+|-..... +|-|.+... +.+++.|.+.|.++|+.+++|.|+|.|.|+..||..||+.+
T Consensus 422 ~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~ 501 (533)
T KOG1817|consen 422 RNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENL 501 (533)
T ss_pred HhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHH
Confidence 3567789999999999887653 577777654 68899999999999999999999999999999999999999
Q ss_pred Hhh
Q 014689 224 LVT 226 (420)
Q Consensus 224 ~~~ 226 (420)
...
T Consensus 502 ~~d 504 (533)
T KOG1817|consen 502 KMD 504 (533)
T ss_pred Hhh
Confidence 873
No 31
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.03 E-value=3.6e-06 Score=88.55 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=65.2
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689 153 NQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 226 (420)
Q Consensus 153 ~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 226 (420)
+....+.+..|+||+|+-...+|+|++.......-.|...|.+++..|++|.|.|||.||..|||.+|+.|..+
T Consensus 371 npngks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd 444 (650)
T KOG4334|consen 371 NPNGKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPD 444 (650)
T ss_pred CCCCceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcch
Confidence 34456788999999999999999998877655667799999999999999999999999999999999999653
No 32
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.94 E-value=3e-05 Score=83.03 Aligned_cols=69 Identities=33% Similarity=0.310 Sum_probs=61.1
Q ss_pred CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689 71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD 146 (420)
Q Consensus 71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~ 146 (420)
++||++.|+|+.+ -+.|.+.. .|+.|.+.|.|.|.|||..|. |+ |+|||+|++.||..||+.|....-.
T Consensus 89 ~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~-~~-~~sKk~ak~~aa~~al~~l~~~~~~ 158 (542)
T KOG2777|consen 89 GKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFE-GG-GRSKKEAKQEAAMAALQVLFKIDEN 158 (542)
T ss_pred cCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEcc-CC-CcchHHHHHHHHHHHHHHHHhccCC
Confidence 7899999999998 34788877 899999999999999999885 44 9999999999999999999876533
No 33
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.69 E-value=5.7e-05 Score=84.59 Aligned_cols=151 Identities=23% Similarity=0.256 Sum_probs=118.6
Q ss_pred ChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC------
Q 014689 73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD------ 146 (420)
Q Consensus 73 npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~------ 146 (420)
|.|..|..||-++.+. |.|++..+|+....+|.|.|.+.+..+..-+....||.|+.+||+...+.|...++-
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p 80 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIP 80 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCc
Confidence 6789999999999987 899999999999999999999999877654456789999999999999988754310
Q ss_pred ----------------C-------------------CCC-----C------------C----------C---------CC
Q 014689 147 ----------------E-------------------GCP-----L------------I----------N---------QD 155 (420)
Q Consensus 147 ----------------E-------------------~lp-----~------------~----------~---------e~ 155 (420)
+ ++| . + . +.
T Consensus 81 ~~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~i 160 (1282)
T KOG0921|consen 81 TLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEI 160 (1282)
T ss_pred ccccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCccc
Confidence 0 000 0 0 0 00
Q ss_pred -----CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEEC-----CEEeeeeeecCHHHHHHHHHHHHHHHHH
Q 014689 156 -----TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFN-----GVTYTGEPGRSKKEAEQLAARAVIRTLL 224 (420)
Q Consensus 156 -----~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~-----Gk~~~~G~G~SKK~AKq~AA~~AL~~L~ 224 (420)
..|-|..|++|-|+..+.. .|+.... ++|.+.|+.+..+- -.....+.|++||.|....|+..+..|-
T Consensus 161 hg~wt~eN~K~~ln~~~q~~~~~~-~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~ 239 (1282)
T KOG0921|consen 161 HGNWTMENAKKALNEYLQKMRIQD-NYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLF 239 (1282)
T ss_pred cCCCCcchhHHHHhHHHhhhhhcc-ccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHH
Confidence 1267999999999999977 8988776 79999999887652 2333568899999999999998887775
Q ss_pred h
Q 014689 225 V 225 (420)
Q Consensus 225 ~ 225 (420)
.
T Consensus 240 h 240 (1282)
T KOG0921|consen 240 H 240 (1282)
T ss_pred H
Confidence 4
No 34
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.00049 Score=69.21 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHcCCCCCcEEEeec-C--CCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689 158 FCKSILNEFAVKMNLELPAYSTRQS-E--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG 228 (420)
Q Consensus 158 n~Ks~LqE~cQk~~~~lP~Y~~~~~-p--~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~ 228 (420)
++...|-++|+++++..|.|.++.+ + .-.+.|.+-+.-|.+.++.|.|.|-|.|++.||+.||..|-.-.+
T Consensus 233 ~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp 306 (333)
T KOG3769|consen 233 WPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTP 306 (333)
T ss_pred chHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCCh
Confidence 6899999999999999999999887 3 567789999999999999999999999999999999999977653
No 35
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0011 Score=66.72 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=68.8
Q ss_pred CCCCCCCChHHHHHHHHHHcCCCCCeEEEec-cC-CCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689 66 NRVPEHLMHKNRLQEHAQRSGIPLPVYQSHN-EG-FQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 143 (420)
Q Consensus 66 ~~l~~~~npKS~LQE~cQK~g~~lP~Yev~~-eG-P~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~ 143 (420)
..|....+|...|-++|+++|+.-|+|.++. +| -.-.|.|.+.++-|.+.+|.| .|.|-+.|++.||++||..+-..
T Consensus 226 ~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG-~Gesl~~A~e~AA~dAL~k~y~~ 304 (333)
T KOG3769|consen 226 REMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQG-QGESLKLAEEQAARDALIKLYDH 304 (333)
T ss_pred HhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccC-cchHHHHHHHHHHHHHHHHHHcC
Confidence 3456778999999999999999999999988 44 456799999999999999988 59999999999999999988764
Q ss_pred c
Q 014689 144 I 144 (420)
Q Consensus 144 ~ 144 (420)
.
T Consensus 305 t 305 (333)
T KOG3769|consen 305 T 305 (333)
T ss_pred C
Confidence 4
No 36
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=96.93 E-value=0.00086 Score=73.61 Aligned_cols=131 Identities=18% Similarity=0.110 Sum_probs=90.6
Q ss_pred eEE------Eec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc----------cCC---CC-
Q 014689 91 VYQ------SHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI----------KDE---GC- 149 (420)
Q Consensus 91 ~Ye------v~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~----------~~E---~l- 149 (420)
.|. ++. .||.|.++|++++.+||..+.. .|.+||.|+-.||++-|+.+.-.. .++ ..
T Consensus 387 QYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~ 464 (816)
T KOG3792|consen 387 QYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEP 464 (816)
T ss_pred eeccccCCCceeccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCC
Confidence 677 555 8999999999999999988753 489999999999999998773110 000 00
Q ss_pred ----C-CC--------------------------CCCCCChhHHHHHHHHHcCCCCCcEEEeec---CCCCCeEEEEEEE
Q 014689 150 ----P-LI--------------------------NQDTVFCKSILNEFAVKMNLELPAYSTRQS---EALLPVFVSSLVF 195 (420)
Q Consensus 150 ----p-~~--------------------------~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~---p~H~~~F~~~V~I 195 (420)
+ .. +..+..-|....|+..++. .. .|+...+ .+|.++|...|.+
T Consensus 465 ~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek~r-g~-k~El~set~~gs~~~R~v~gV~r 542 (816)
T KOG3792|consen 465 KGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEKRR-GD-KYELPSETGTGSHDKRFVKGVMR 542 (816)
T ss_pred CCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhhcc-cc-ceecccccCCCCCCceeeeeeee
Confidence 0 00 0001112222334444433 33 7888765 6899999999999
Q ss_pred CCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689 196 NGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 226 (420)
Q Consensus 196 ~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 226 (420)
.|+.+ .|.|.++|-|+..|+.-+++.+...
T Consensus 543 vG~~a-kG~~~~gd~a~~~a~Lca~~pt~~l 572 (816)
T KOG3792|consen 543 VGILA-KGLLLNGDRAVELALLCAEKPTSGL 572 (816)
T ss_pred eehhh-ccccccchHHHHHHHHhccCccccc
Confidence 99765 5999999999998887777665443
No 37
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.70 E-value=0.0069 Score=50.62 Aligned_cols=66 Identities=23% Similarity=0.302 Sum_probs=44.1
Q ss_pred hHHHHHHHHHcCC-----CCCcEEEeecCCCCCeEEEEEEECC----EEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689 160 KSILNEFAVKMNL-----ELPAYSTRQSEALLPVFVSSLVFNG----VTYTGEPGRSKKEAEQLAARAVIRTLLVTSG 228 (420)
Q Consensus 160 Ks~LqE~cQk~~~-----~lP~Y~~~~~p~H~~~F~~~V~I~G----k~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~ 228 (420)
++.|+.||++.-- ..|.|.+....+ .|.|+|.+-. +.+.+....||+.||+.||-+|...|.....
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~---~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ 76 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS---GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGE 76 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC---cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 6789999988532 347888877632 8999999853 2233345799999999999999999987653
No 38
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=95.23 E-value=0.046 Score=45.65 Aligned_cols=68 Identities=13% Similarity=0.013 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcC-----CCCCeEEEeccCCCCCCeEEEEEEECCE---EeecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689 75 KNRLQEHAQRSG-----IPLPVYQSHNEGFQHAPKFRASVSVDGV---TYTSPNTFSHRKAAEQDVAKIALECISKKIKD 146 (420)
Q Consensus 75 KS~LQE~cQK~g-----~~lP~Yev~~eGP~H~p~FtvtV~V~G~---~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~ 146 (420)
++.|+.||++.. ...|.|.+...+. .|.|+|.+=.. .-..|..-.||+.||+.||..|...|.+.+-.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~l 77 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGEL 77 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 578999999842 2348899887543 79999998531 11223346899999999999999999987643
No 39
>PF14954 LIX1: Limb expression 1
Probab=95.03 E-value=0.12 Score=50.41 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=57.6
Q ss_pred CCChhHHHHHHHHHc---CCCC-----CcEEEeecCCCCCeEEEEEEECC-EEeee-eeecCHHHHHHHHHHHHHH-HHH
Q 014689 156 TVFCKSILNEFAVKM---NLEL-----PAYSTRQSEALLPVFVSSLVFNG-VTYTG-EPGRSKKEAEQLAARAVIR-TLL 224 (420)
Q Consensus 156 ~~n~Ks~LqE~cQk~---~~~l-----P~Y~~~~~p~H~~~F~~~V~I~G-k~~~~-G~G~SKK~AKq~AA~~AL~-~L~ 224 (420)
..|-+..||||=|.+ +..+ ..|+.+ |+..+.|.|-|++-| -.|+. -.+.||-+|+++||+.||. .+.
T Consensus 20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~--ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvf 97 (252)
T PF14954_consen 20 DVNVVEALQEFWQMKQSRGADLKSEALVVYESV--PSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVF 97 (252)
T ss_pred cchHHHHHHHHHHHHHhccccCCCCCeeeeecc--CCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHH
Confidence 458899999987643 2222 334433 566788999999965 44544 4689999999999999985 566
Q ss_pred hhcCchHHHHHHHH
Q 014689 225 VTSGSATILSEIIK 238 (420)
Q Consensus 225 ~~s~~~~~l~d~i~ 238 (420)
++.++..+..|+|.
T Consensus 98 NEhPsRrIt~eFi~ 111 (252)
T PF14954_consen 98 NEHPSRRITDEFIE 111 (252)
T ss_pred hcCCcccccHHHHH
Confidence 77776656566665
No 40
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=92.17 E-value=0.068 Score=56.42 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=68.0
Q ss_pred cccccCCCCCCCC-CChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHH
Q 014689 59 APVVLTPNRVPEH-LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIAL 137 (420)
Q Consensus 59 ~p~il~~~~l~~~-~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL 137 (420)
-.++++....+.. .++|..|.+||-+.+..-|.|++... .+..|...+.++|..|..+.+-.++|.|+|.||..+|
T Consensus 361 ~r~~f~r~~~pa~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l 437 (477)
T KOG2334|consen 361 GRKIFDRPTDPAKWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVAL 437 (477)
T ss_pred hcccccccCCCcCCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHH
Confidence 3444454444444 68999999999999999999999874 4578999999999999888778999999999999999
Q ss_pred HHHHhcc
Q 014689 138 ECISKKI 144 (420)
Q Consensus 138 ~~L~~~~ 144 (420)
.......
T Consensus 438 ~~s~l~e 444 (477)
T KOG2334|consen 438 RKSNLWE 444 (477)
T ss_pred HhcCcch
Confidence 8776543
No 41
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=90.56 E-value=0.34 Score=55.63 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEee-eeeecCHHHHHHHHHHHHHHHHHh
Q 014689 158 FCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYT-GEPGRSKKEAEQLAARAVIRTLLV 225 (420)
Q Consensus 158 n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~-~G~G~SKK~AKq~AA~~AL~~L~~ 225 (420)
|-|..|-.||.++.+. |+|++..+ +...-.|.|.|.+.+..+. .|...+||.|+.+||+.-.+.|-.
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr 70 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVR 70 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhh
Confidence 5688999999999998 89999888 5556679999999886664 366788999999999999998853
No 42
>PF14954 LIX1: Limb expression 1
Probab=90.00 E-value=0.81 Score=44.79 Aligned_cols=67 Identities=27% Similarity=0.298 Sum_probs=48.3
Q ss_pred CCCChHHHHHHHHHH---cCCCC-----CeEEEeccCCCCCCeEEEEEEEC-CEEeecCCccccchHHHHHHHHHHHHH
Q 014689 70 EHLMHKNRLQEHAQR---SGIPL-----PVYQSHNEGFQHAPKFRASVSVD-GVTYTSPNTFSHRKAAEQDVAKIALEC 139 (420)
Q Consensus 70 ~~~npKS~LQE~cQK---~g~~l-----P~Yev~~eGP~H~p~FtvtV~V~-G~~~~~Gg~GsSKKeAEq~AAk~AL~~ 139 (420)
...|-+..|||+=|. .|..+ ..|+. .|...+.|.|-|++- |--||.-..-.||-+|+++||+.||-.
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs---~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYES---VPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeec---cCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 457999999995544 23333 34554 566678899999994 555655445689999999999999854
No 43
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=86.61 E-value=0.33 Score=51.47 Aligned_cols=68 Identities=29% Similarity=0.236 Sum_probs=59.3
Q ss_pred CChhHHHHHHHHHcCCCCCcEEEeecCCCCCeEEEEEEECCEEeeeeee-cCHHHHHHHHHHHHHHHHHhh
Q 014689 157 VFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLVT 226 (420)
Q Consensus 157 ~n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G-~SKK~AKq~AA~~AL~~L~~~ 226 (420)
..++..|..||.+....-|.|++++. -++.|...+++.|+.|..+.+ +|||.|+|.||..+|......
T Consensus 375 ~~~k~~l~~~~~~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~ 443 (477)
T KOG2334|consen 375 DTPKMVLADLCVKTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW 443 (477)
T ss_pred CCHHHHHHHhhhhhcCCCcchhhhhh--hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence 46899999999999999999999884 357899999999999988765 999999999999999876544
No 44
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=76.19 E-value=2.8 Score=47.16 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=50.5
Q ss_pred CCCChHHHHHHHHHHcCCCCCeEEEec-cC-CCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHH
Q 014689 70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EG-FQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS 141 (420)
Q Consensus 70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eG-P~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~ 141 (420)
..+++...|+|- ..| . .|++.. .| -.|+++|...|.+.|+.+- | .+.+++.|+..|+..+++.+.
T Consensus 504 alK~vsd~L~Ek--~rg--~-k~El~set~~gs~~~R~v~gV~rvG~~ak-G-~~~~gd~a~~~a~Lca~~pt~ 570 (816)
T KOG3792|consen 504 ALKLVSDELAEK--RRG--D-KYELPSETGTGSHDKRFVKGVMRVGILAK-G-LLLNGDRAVELALLCAEKPTS 570 (816)
T ss_pred hhcchhHHHhhh--ccc--c-ceecccccCCCCCCceeeeeeeeeehhhc-c-ccccchHHHHHHHHhccCccc
Confidence 456777777775 233 2 688877 44 7899999999999999874 4 589999999999998886554
No 45
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=55.04 E-value=1.9e+02 Score=27.25 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=69.8
Q ss_pred CCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCC----CCCCCCC---CCCChhHHHHHHHHHcCCCC
Q 014689 102 APKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE----GCPLINQ---DTVFCKSILNEFAVKMNLEL 174 (420)
Q Consensus 102 ~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E----~lp~~~e---~~~n~Ks~LqE~cQk~~~~l 174 (420)
+|.=++.++-.|+.+.+| ++|..+|+. |++..++.|...+-.. .+...+- -...+.=-|..++.... ..
T Consensus 45 ~Pk~t~lIF~SGKiv~tG--aks~~~a~~-a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L~~la~~~~-~~ 120 (174)
T cd04518 45 DPKIAALIFRSGKMVCTG--AKSVEDLHR-AVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNLDAIAIGLP-NA 120 (174)
T ss_pred CCcEEEEEECCCeEEEEc--cCCHHHHHH-HHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCHHHHHhhCC-CC
Confidence 456677888899988876 588888887 5677888887765321 1111000 00122334777776654 33
Q ss_pred CcEEEeecC-----CCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHH
Q 014689 175 PAYSTRQSE-----ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 224 (420)
Q Consensus 175 P~Y~~~~~p-----~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~ 224 (420)
.|+-.+-| -..+.-++.+.-.|+.+-+| ++|..++++.. +..+..|+
T Consensus 121 -~YePe~fpglvyR~~~pk~~~lIF~SGKvvitG-aks~~~~~~a~-~~i~~~l~ 172 (174)
T cd04518 121 -EYEPEQFPGLVYRLDEPKVVLLLFSSGKMVITG-AKSEEDAKRAV-EKLLSRLK 172 (174)
T ss_pred -ccCcccCceEEEEecCCcEEEEEeCCCEEEEEe-cCCHHHHHHHH-HHHHHHHh
Confidence 56544332 23456677777789887777 68888877654 44555554
No 46
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=53.60 E-value=1.6e+02 Score=27.71 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=63.8
Q ss_pred CCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCCCCCCC---C---CCCCChhHHHHHHHHHcCCCC
Q 014689 101 HAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLI---N---QDTVFCKSILNEFAVKMNLEL 174 (420)
Q Consensus 101 H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E~lp~~---~---e~~~n~Ks~LqE~cQk~~~~l 174 (420)
++|.-++.++-.|+.+.+| ++|..+|+. |++..++.|.+.+-....+-. + .-+..+.=.|.+++..+.-..
T Consensus 44 ~~Pk~t~lIF~SGKiviTG--aks~e~a~~-a~~~i~~~L~~~g~~~~~~~~~v~Nivat~~l~~~i~L~~la~~~~~~~ 120 (174)
T cd04516 44 REPKTTALIFSSGKMVCTG--AKSEDDSKL-AARKYARIIQKLGFPAKFTDFKIQNIVGSCDVKFPIRLEGLAHAHKQFS 120 (174)
T ss_pred CCCcEEEEEECCCeEEEEe--cCCHHHHHH-HHHHHHHHHHHcCCCCCCCceEEEEEEEEEECCCcccHHHHHHhChhcc
Confidence 3567788889999988776 588888877 556677777765532211100 0 001134445888876443223
Q ss_pred CcEEEeecCC-----CCCeEEEEEEECCEEeeeeeecCHHHHHHH
Q 014689 175 PAYSTRQSEA-----LLPVFVSSLVFNGVTYTGEPGRSKKEAEQL 214 (420)
Q Consensus 175 P~Y~~~~~p~-----H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~ 214 (420)
.|+-..-|+ ..+.-++.+...|+.+-+| ++|..++++.
T Consensus 121 -~YePE~fPgliyr~~~pk~~~liF~sGkvvitG-aks~~~~~~a 163 (174)
T cd04516 121 -SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTG-AKSREEIYQA 163 (174)
T ss_pred -EeCCccCceEEEEecCCcEEEEEeCCCEEEEEe-cCCHHHHHHH
Confidence 565444321 2345566777788877666 5666666543
No 47
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=52.35 E-value=1.9e+02 Score=27.09 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=73.1
Q ss_pred HHHHHHHcCCCCCeEEEec-cC---CCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCC-CCC--
Q 014689 78 LQEHAQRSGIPLPVYQSHN-EG---FQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE-GCP-- 150 (420)
Q Consensus 78 LQE~cQK~g~~lP~Yev~~-eG---P~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E-~lp-- 150 (420)
|.+++.... --+|+- . .| --++|.=++.++-+|+...+| ++|..+|+.. ++..++.|...+-.. ..+
T Consensus 20 L~~la~~l~--n~eYeP-~fpgli~R~~~Pk~t~lIF~sGKiviTG--aks~~~~~~a-~~~~~~~l~~~g~~~~~~~~f 93 (174)
T cd04517 20 LRKLALAGR--NVEYNP-RYPKVTMRLREPRATASVWSSGKITITG--ATSEEEAKQA-ARRAARLLQKLGFKVVRFSNF 93 (174)
T ss_pred HHHHHhhCC--CCEEeC-CCCEEEEEecCCcEEEEEECCCeEEEEc--cCCHHHHHHH-HHHHHHHHHHcCCCcccCCce
Confidence 666665432 235664 2 11 112355667777789888776 5888888874 666777776654221 111
Q ss_pred -CCC---CCCCChhHHHHHHHHHcCCCCCcEEEeecC-----CCCCeEEEEEEECCEEeeeeeecCHHHHHHHH
Q 014689 151 -LIN---QDTVFCKSILNEFAVKMNLELPAYSTRQSE-----ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLA 215 (420)
Q Consensus 151 -~~~---e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~p-----~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~A 215 (420)
..+ .-...+.=.|.+++..+.... .|+=..-| -..+.-++.+...|+.+-+| +++..++++..
T Consensus 94 ~v~nIvat~~~~~~i~L~~la~~~~~~~-~YePE~fPgliyr~~~p~~t~lIF~sGkivitG-aks~~~~~~a~ 165 (174)
T cd04517 94 RVVNVLATCSMPFPIRLDELAAKNRSSA-SYEPELHPGVVYRITGPRATLSIFSTGSVTVTG-ARSMEDVREAV 165 (174)
T ss_pred EEEEEEEEEeCCCcccHHHHHHhchhhc-EeCCccCCEEEEEECCCcEEEEEeCCCEEEEEe-cCCHHHHHHHH
Confidence 000 001233444888887553333 55533322 12356667777788777666 67778877654
No 48
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=41.64 E-value=3e+02 Score=25.74 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=68.2
Q ss_pred CCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCC-CCCCC---C---CCCCChhHHHHHHHHHcCCCC
Q 014689 102 APKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE-GCPLI---N---QDTVFCKSILNEFAVKMNLEL 174 (420)
Q Consensus 102 ~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E-~lp~~---~---e~~~n~Ks~LqE~cQk~~~~l 174 (420)
+|.=++.++-.|+.+.+| ++|..+|+. |++..++.|...+-.. ..+.. + .-...+.=-|..++...+-..
T Consensus 45 ~P~~t~lIf~sGKivitG--aks~~~~~~-a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~L~~la~~~~~~~ 121 (174)
T cd00652 45 EPKTTALIFSSGKMVITG--AKSEEDAKL-AARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLEELALKHPENA 121 (174)
T ss_pred CCcEEEEEECCCEEEEEe--cCCHHHHHH-HHHHHHHHHHHcCCCccccCceEEEEEEEEEECCCcccHHHHHhhhhccc
Confidence 356677888899988775 588888887 5677777777655322 11100 0 001234445777777665333
Q ss_pred CcEEEeecC-----CCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689 175 PAYSTRQSE-----ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223 (420)
Q Consensus 175 P~Y~~~~~p-----~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L 223 (420)
.|+-.+-| -..+.-++.+.-.|+.+-+| ++|..++++.. +..+..|
T Consensus 122 -~YePe~fpgli~r~~~pk~t~lIF~sGkvvitG-aks~~~~~~a~-~~i~~~L 172 (174)
T cd00652 122 -SYEPELFPGLIYRMDEPKVVLLIFVSGKIVITG-AKSREDIYEAV-EKIYPIL 172 (174)
T ss_pred -EECCccCceEEEEecCCcEEEEEEcCCEEEEEe-cCCHHHHHHHH-HHHHHHH
Confidence 55544322 12355667777788877666 67777777654 4444433
No 49
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=39.98 E-value=40 Score=27.11 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=24.0
Q ss_pred EEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689 198 VTYTGEPGRSKKEAEQLAARAVIRTLLVT 226 (420)
Q Consensus 198 k~~~~G~G~SKK~AKq~AA~~AL~~L~~~ 226 (420)
..++.|.|.+.+.|+++|-..+...|...
T Consensus 13 ~l~a~G~~~~~~~A~~~A~~~la~~i~~~ 41 (92)
T PF02169_consen 13 YLYAVGSGSSREQAKQDALANLAEQISVV 41 (92)
T ss_pred EEEEEEcccChHHHHHHHHHHHHHheeEE
Confidence 45677999999999999999988877543
No 50
>PLN00062 TATA-box-binding protein; Provisional
Probab=35.39 E-value=3.9e+02 Score=25.28 Aligned_cols=108 Identities=15% Similarity=0.050 Sum_probs=60.5
Q ss_pred CCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCCCCC---CCC---CCCCChhHHHHHHHHHcCCCCC
Q 014689 102 APKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCP---LIN---QDTVFCKSILNEFAVKMNLELP 175 (420)
Q Consensus 102 ~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E~lp---~~~---e~~~n~Ks~LqE~cQk~~~~lP 175 (420)
+|.=++.++-.|+.+.+| ++|..+|+. |++..++.|...+-.-..+ ..+ .-+..+.=.|..++..+.-..
T Consensus 45 ~Pk~t~lIF~SGKiviTG--aks~e~a~~-a~~~~~~~L~~lg~~~~~~~f~v~NIvas~~l~~~i~L~~la~~~~~~~- 120 (179)
T PLN00062 45 EPKTTALIFASGKMVCTG--AKSEHDSKL-AARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYAHGAFS- 120 (179)
T ss_pred CCcEEEEEECCCeEEEEe--cCCHHHHHH-HHHHHHHHHHHcCCCcCCCccEEEEEEEEEECCCcccHHHHHHhchhhc-
Confidence 455677888899888775 478877776 5666777777655321111 000 001123344777776433223
Q ss_pred cEEEeecC-----CCCCeEEEEEEECCEEeeeeeecCHHHHHHH
Q 014689 176 AYSTRQSE-----ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQL 214 (420)
Q Consensus 176 ~Y~~~~~p-----~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~ 214 (420)
.|+-..-| -..+.-++.+...|+.+-+| +++..+++..
T Consensus 121 ~YePE~fPgliyr~~~pk~~~liF~sGkvvitG-aks~~~~~~a 163 (179)
T PLN00062 121 SYEPELFPGLIYRMKQPKIVLLIFVSGKIVITG-AKVREEIYTA 163 (179)
T ss_pred ccCcccCceEEEEeCCCcEEEEEeCCCEEEEEe-cCCHHHHHHH
Confidence 45543322 12355666777788877666 5666665543
No 51
>PRK00394 transcription factor; Reviewed
Probab=33.45 E-value=4.2e+02 Score=25.01 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=70.1
Q ss_pred CCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCCC-CC---CCCC---CCCChhHHHHHHHHHcCCCC
Q 014689 102 APKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEG-CP---LINQ---DTVFCKSILNEFAVKMNLEL 174 (420)
Q Consensus 102 ~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E~-lp---~~~e---~~~n~Ks~LqE~cQk~~~~l 174 (420)
+|.=++.|+-.|+.+.+| ++|..+|+. |++..++.|...+-... .+ ..+- -...+.=-|.+++...+..-
T Consensus 44 ~Pk~t~lIf~sGKiv~tG--a~S~~~a~~-a~~~~~~~l~~~g~~~~~~~~~~i~NiVas~~l~~~i~L~~la~~~~~~~ 120 (179)
T PRK00394 44 DPKIAALIFRSGKVVCTG--AKSVEDLHE-AVKIIIKKLKELGIKVIDEPEIKVQNIVASADLGVELNLNAIAIGLGLEN 120 (179)
T ss_pred CCceEEEEEcCCcEEEEc--cCCHHHHHH-HHHHHHHHHHHcCCCccCCCceEEEEEEEEEEcCCeEcHHHHHHhcCcCC
Confidence 456777888899888776 588888887 56778888876553211 11 1000 00122234777776653211
Q ss_pred CcEEEeecC-----CCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHH
Q 014689 175 PAYSTRQSE-----ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 224 (420)
Q Consensus 175 P~Y~~~~~p-----~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~ 224 (420)
=.|+-.+-| -..+.-++.+...|+.+-+| ++|..+++... +..+..|.
T Consensus 121 ~~YePe~fPglvyR~~~pk~~~lIF~SGKvvitG-aks~~~~~~a~-~~i~~~l~ 173 (179)
T PRK00394 121 IEYEPEQFPGLVYRLDDPKVVVLLFGSGKLVITG-AKSEEDAEKAV-EKILEKLE 173 (179)
T ss_pred cEECcccCceEEEEecCCcEEEEEEcCCEEEEEe-cCCHHHHHHHH-HHHHHHHH
Confidence 255544322 23456677777789887777 67887777654 45555554
No 52
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=30.30 E-value=1.5e+02 Score=21.52 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=13.7
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 014689 122 FSHRKAAEQDVAKIALECIS 141 (420)
Q Consensus 122 GsSKKeAEq~AAk~AL~~L~ 141 (420)
+.+|++|+..+++ ++..+.
T Consensus 24 F~TkkeA~~~~~~-~~~~~~ 42 (46)
T PF14657_consen 24 FKTKKEAEKALAK-IEAELE 42 (46)
T ss_pred CCcHHHHHHHHHH-HHHHHH
Confidence 7999999997766 444443
No 53
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=28.84 E-value=62 Score=40.15 Aligned_cols=70 Identities=17% Similarity=0.076 Sum_probs=52.6
Q ss_pred ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeE--------------EEEEEECCEEeeeeeecCHHHHHHHHHHHHHH
Q 014689 158 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVF--------------VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIR 221 (420)
Q Consensus 158 n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F--------------~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~ 221 (420)
..++.+.+.|-...|.+|.+..+++ +.|..+| ..+|.+.+.....|.|.+...||..|++.|+.
T Consensus 1515 ~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s~~k~A~~ 1594 (1606)
T KOG0701|consen 1515 LDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKASAAKAALK 1594 (1606)
T ss_pred cCcccccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhhHHHHHHH
Confidence 3566899999999999999999876 3443332 33444445445568899999999999999999
Q ss_pred HHHhhc
Q 014689 222 TLLVTS 227 (420)
Q Consensus 222 ~L~~~s 227 (420)
.|....
T Consensus 1595 ll~~~~ 1600 (1606)
T KOG0701|consen 1595 LLKKLG 1600 (1606)
T ss_pred HHHHhh
Confidence 887653
No 54
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.46 E-value=38 Score=37.87 Aligned_cols=31 Identities=39% Similarity=0.565 Sum_probs=15.0
Q ss_pred CCCCCccccc---cchhhhhhhhhhhhccccccc
Q 014689 370 PVLGQHSEGG---SSSTNKRRKNKRKANKKLRTD 400 (420)
Q Consensus 370 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 400 (420)
|+-+|+...- ..+.+|.+|+|||.|||-.++
T Consensus 73 ~~~~~es~~~~~~~~sk~k~KKK~krkkKk~~~~ 106 (665)
T KOG2422|consen 73 PSVGQESRITLASKSSKNKKKKKKKRKKKKSTAE 106 (665)
T ss_pred cccCCcccccccchhhccccchhhhhccccccCc
Confidence 4455665532 333444445555555554443
No 55
>COG1944 Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=3.1e+02 Score=29.37 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEEC--CEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689 159 CKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFN--GVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 227 (420)
Q Consensus 159 ~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~--Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s 227 (420)
-...+|.++.+.|+.- ..++... --.-+.| +.++.. +..+..|.|.||+.|+-.|..++++.+..+.
T Consensus 19 t~~~~q~~l~~~gitr-I~~~t~Ld~~gIPv~-~a~rp~~~~~~~~~GKGat~~~A~vSAimE~~Er~sAe~ 88 (398)
T COG1944 19 TLAAFQPLLAALGITR-IEDITWLDRLGIPVV-WAVRPRALGLSVSQGKGATKAAARVSALMEALERLSAEY 88 (398)
T ss_pred HHHHHHHHHHhcCcee-eeeeeccccCCCceE-EEeeeccccceeecCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 5678888888888763 2333322 1122333 333332 4566779999999999999999999987665
Done!