Query 014691
Match_columns 420
No_of_seqs 273 out of 1724
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02520 bifunctional 3-dehydr 100.0 4E-101 8E-106 809.8 44.4 411 9-420 8-418 (529)
2 PRK09310 aroDE bifunctional 3- 100.0 9.6E-90 2.1E-94 715.5 41.5 368 25-419 1-370 (477)
3 PRK02412 aroD 3-dehydroquinate 100.0 4.4E-55 9.5E-60 420.9 26.0 235 12-248 4-250 (253)
4 COG0710 AroD 3-dehydroquinate 100.0 6.7E-53 1.4E-57 394.8 24.7 222 23-247 1-228 (231)
5 TIGR01093 aroD 3-dehydroquinat 100.0 5.2E-53 1.1E-57 401.1 23.5 217 25-244 1-228 (228)
6 PF01487 DHquinase_I: Type I 3 100.0 8.9E-53 1.9E-57 398.5 20.3 217 27-245 1-224 (224)
7 cd00502 DHQase_I Type I 3-dehy 100.0 8.3E-51 1.8E-55 385.3 24.6 215 25-245 1-224 (225)
8 PRK13575 3-dehydroquinate dehy 100.0 9.9E-51 2.2E-55 386.2 24.7 220 23-246 3-237 (238)
9 PRK13576 3-dehydroquinate dehy 100.0 1.7E-49 3.6E-54 371.3 22.2 204 22-247 1-206 (216)
10 PRK01261 aroD 3-dehydroquinate 100.0 1.4E-46 3E-51 354.9 24.0 215 9-247 4-226 (229)
11 COG0169 AroE Shikimate 5-dehyd 100.0 2.1E-47 4.5E-52 370.4 18.1 162 249-420 2-166 (283)
12 PRK14027 quinate/shikimate deh 100.0 9E-47 1.9E-51 368.3 17.4 157 252-420 3-167 (283)
13 PRK12749 quinate/shikimate deh 100.0 4.9E-46 1.1E-50 364.2 17.9 159 249-420 3-167 (288)
14 PRK12549 shikimate 5-dehydroge 100.0 1.6E-45 3.4E-50 360.3 18.0 158 250-420 2-167 (284)
15 TIGR01809 Shik-DH-AROM shikima 100.0 6.8E-45 1.5E-49 355.7 17.5 157 253-420 5-165 (282)
16 PRK12548 shikimate 5-dehydroge 100.0 1.6E-44 3.4E-49 354.4 18.2 158 249-419 5-168 (289)
17 PRK00258 aroE shikimate 5-dehy 100.0 4.1E-44 8.8E-49 349.8 17.9 159 250-420 2-163 (278)
18 PRK12550 shikimate 5-dehydroge 100.0 5E-44 1.1E-48 347.0 18.2 157 248-420 4-162 (272)
19 TIGR00507 aroE shikimate 5-deh 100.0 2.4E-42 5.3E-47 335.9 17.4 153 254-419 1-155 (270)
20 KOG0692 Pentafunctional AROM p 100.0 3.7E-32 7.9E-37 271.2 -4.7 390 18-417 89-491 (595)
21 PF08501 Shikimate_dh_N: Shiki 99.9 2.4E-28 5.2E-33 196.0 6.8 81 258-338 1-83 (83)
22 PRK14192 bifunctional 5,10-met 99.8 3.6E-19 7.7E-24 173.8 10.6 142 256-414 38-193 (283)
23 PF01488 Shikimate_DH: Shikima 98.8 4.9E-09 1.1E-13 91.7 5.3 44 377-420 8-52 (135)
24 PRK08291 ectoine utilization p 98.6 3.6E-08 7.7E-13 98.9 5.1 76 330-420 96-173 (330)
25 TIGR02992 ectoine_eutC ectoine 98.5 1.2E-07 2.6E-12 94.9 5.3 76 330-420 93-170 (326)
26 cd01065 NAD_bind_Shikimate_DH 98.4 7.8E-07 1.7E-11 78.7 6.9 57 352-419 1-58 (155)
27 PRK00045 hemA glutamyl-tRNA re 98.2 4.7E-07 1E-11 93.9 0.6 98 314-419 113-221 (423)
28 PRK13940 glutamyl-tRNA reducta 98.1 1.5E-06 3.3E-11 89.6 3.7 95 315-420 113-221 (414)
29 COG0373 HemA Glutamyl-tRNA red 98.0 1.3E-05 2.8E-10 82.1 7.9 145 254-420 54-218 (414)
30 cd05311 NAD_bind_2_malic_enz N 97.9 2E-05 4.2E-10 75.0 6.3 53 354-417 9-68 (226)
31 cd01078 NAD_bind_H4MPT_DH NADP 97.5 0.00017 3.7E-09 66.5 6.0 64 349-419 3-67 (194)
32 TIGR02853 spore_dpaA dipicolin 97.4 0.0012 2.6E-08 65.1 10.1 41 377-417 147-187 (287)
33 PRK00676 hemA glutamyl-tRNA re 97.3 0.00024 5.3E-09 71.2 4.0 91 315-416 107-210 (338)
34 cd05191 NAD_bind_amino_acid_DH 97.2 0.0012 2.7E-08 52.8 6.9 53 353-412 2-55 (86)
35 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0012 2.7E-08 59.9 7.0 40 377-416 40-80 (168)
36 PLN00203 glutamyl-tRNA reducta 97.1 0.00059 1.3E-08 72.5 5.1 97 315-420 196-306 (519)
37 cd01075 NAD_bind_Leu_Phe_Val_D 97.1 0.0013 2.8E-08 61.3 6.8 61 354-419 6-66 (200)
38 PRK14175 bifunctional 5,10-met 97.0 0.004 8.6E-08 61.2 9.8 125 273-413 54-191 (286)
39 PRK14194 bifunctional 5,10-met 96.8 0.0078 1.7E-07 59.5 9.8 121 273-414 55-193 (301)
40 cd05213 NAD_bind_Glutamyl_tRNA 96.8 0.0016 3.5E-08 64.8 5.0 97 314-419 109-217 (311)
41 TIGR01035 hemA glutamyl-tRNA r 96.7 0.0021 4.6E-08 66.6 5.1 42 378-419 177-219 (417)
42 PRK08306 dipicolinate synthase 96.6 0.0032 6.9E-08 62.4 5.9 40 377-416 148-187 (296)
43 PRK09140 2-dehydro-3-deoxy-6-p 96.4 0.069 1.5E-06 50.1 12.9 120 25-172 11-130 (206)
44 PRK06141 ornithine cyclodeamin 96.3 0.0048 1E-07 61.6 4.9 41 380-420 124-166 (314)
45 PF00670 AdoHcyase_NAD: S-aden 96.3 0.015 3.2E-07 52.4 7.4 42 377-418 19-60 (162)
46 PF13241 NAD_binding_7: Putati 96.2 0.0053 1.1E-07 50.9 4.0 38 377-414 3-40 (103)
47 PRK14188 bifunctional 5,10-met 96.2 0.028 6.2E-07 55.6 9.7 117 273-414 54-193 (296)
48 TIGR00518 alaDH alanine dehydr 96.2 0.0066 1.4E-07 62.0 5.3 41 379-419 165-205 (370)
49 TIGR01108 oadA oxaloacetate de 96.1 0.8 1.7E-05 49.6 21.0 210 34-246 19-246 (582)
50 PRK08328 hypothetical protein; 96.1 0.0061 1.3E-07 58.1 4.4 37 378-414 24-61 (231)
51 PRK07340 ornithine cyclodeamin 96.1 0.012 2.7E-07 58.4 6.5 41 379-419 123-165 (304)
52 cd00958 DhnA Class I fructose- 96.0 0.11 2.4E-06 49.3 12.6 154 35-199 20-185 (235)
53 cd04726 KGPDC_HPS 3-Keto-L-gul 95.9 0.2 4.3E-06 46.2 13.5 130 24-172 1-132 (202)
54 PRK05476 S-adenosyl-L-homocyst 95.9 0.017 3.8E-07 59.9 6.9 42 377-418 208-249 (425)
55 cd07937 DRE_TIM_PC_TC_5S Pyruv 95.9 1.6 3.5E-05 42.6 20.3 212 34-246 19-246 (275)
56 PF03807 F420_oxidored: NADP o 95.8 0.013 2.8E-07 47.3 4.5 37 383-419 1-41 (96)
57 TIGR02354 thiF_fam2 thiamine b 95.8 0.011 2.5E-07 55.1 4.6 37 377-413 17-54 (200)
58 TIGR02356 adenyl_thiF thiazole 95.7 0.013 2.8E-07 54.7 4.6 36 378-413 18-54 (202)
59 cd00452 KDPG_aldolase KDPG and 95.7 0.21 4.5E-06 46.0 12.6 119 25-172 5-123 (190)
60 cd00401 AdoHcyase S-adenosyl-L 95.7 0.023 5E-07 58.8 6.8 42 377-418 198-239 (413)
61 PRK08618 ornithine cyclodeamin 95.7 0.012 2.7E-07 58.9 4.7 40 380-419 126-167 (325)
62 PRK08762 molybdopterin biosynt 95.6 0.011 2.4E-07 60.5 4.1 35 379-413 133-168 (376)
63 TIGR02355 moeB molybdopterin s 95.6 0.015 3.3E-07 55.7 4.7 36 379-414 22-58 (240)
64 PRK05866 short chain dehydroge 95.5 0.021 4.4E-07 56.1 5.4 43 377-419 36-79 (293)
65 PRK14189 bifunctional 5,10-met 95.5 0.053 1.2E-06 53.3 8.2 121 273-412 54-190 (285)
66 PRK08644 thiamine biosynthesis 95.5 0.018 3.8E-07 54.3 4.7 36 378-413 25-61 (212)
67 PF02826 2-Hacid_dh_C: D-isome 95.5 0.03 6.5E-07 51.1 6.0 42 376-417 31-72 (178)
68 cd00958 DhnA Class I fructose- 95.4 0.62 1.3E-05 44.2 15.1 138 27-170 65-211 (235)
69 cd04740 DHOD_1B_like Dihydroor 95.4 0.5 1.1E-05 46.5 14.8 84 25-117 91-185 (296)
70 PRK14176 bifunctional 5,10-met 95.4 0.077 1.7E-06 52.2 8.8 124 273-412 60-196 (287)
71 PRK12475 thiamine/molybdopteri 95.4 0.02 4.3E-07 57.8 4.8 37 378-414 21-58 (338)
72 PRK12331 oxaloacetate decarbox 95.4 3.5 7.6E-05 43.3 21.5 211 34-246 24-251 (448)
73 PRK14982 acyl-ACP reductase; P 95.4 0.022 4.8E-07 57.4 5.1 43 377-419 151-196 (340)
74 TIGR03128 RuMP_HxlA 3-hexulose 95.4 0.4 8.6E-06 44.4 13.2 131 25-173 1-133 (206)
75 PRK10792 bifunctional 5,10-met 95.3 0.083 1.8E-06 51.9 8.8 120 273-413 55-192 (285)
76 PRK05690 molybdopterin biosynt 95.3 0.024 5.3E-07 54.5 5.0 36 378-413 29-65 (245)
77 PRK12330 oxaloacetate decarbox 95.3 2.9 6.4E-05 44.4 20.7 211 34-246 25-254 (499)
78 PRK07455 keto-hydroxyglutarate 95.3 0.16 3.4E-06 46.9 10.1 119 25-172 13-131 (187)
79 cd00945 Aldolase_Class_I Class 95.2 2.2 4.7E-05 38.5 17.6 152 34-200 11-179 (201)
80 PRK06196 oxidoreductase; Provi 95.2 0.028 6.2E-07 55.6 5.3 42 377-418 22-64 (315)
81 cd00757 ThiF_MoeB_HesA_family 95.2 0.026 5.7E-07 53.5 4.7 36 378-413 18-54 (228)
82 PLN02780 ketoreductase/ oxidor 95.1 0.026 5.7E-07 56.3 4.8 40 380-419 52-92 (320)
83 PRK07688 thiamine/molybdopteri 95.1 0.028 6E-07 56.8 4.9 37 378-414 21-58 (339)
84 TIGR00936 ahcY adenosylhomocys 95.1 0.052 1.1E-06 56.0 6.8 41 377-417 191-231 (406)
85 PRK15116 sulfur acceptor prote 95.0 0.03 6.5E-07 54.6 4.8 36 378-413 27-63 (268)
86 PRK14180 bifunctional 5,10-met 95.0 0.14 3.1E-06 50.2 9.3 119 273-412 53-190 (282)
87 PRK14191 bifunctional 5,10-met 94.9 0.24 5.2E-06 48.7 10.7 119 273-412 53-189 (285)
88 PRK00043 thiE thiamine-phospha 94.9 1 2.2E-05 41.7 14.6 108 36-173 21-131 (212)
89 PRK05597 molybdopterin biosynt 94.9 0.036 7.7E-07 56.3 5.0 37 378-414 25-62 (355)
90 PRK14041 oxaloacetate decarbox 94.9 4.5 9.7E-05 42.7 20.6 210 34-246 23-250 (467)
91 cd00959 DeoC 2-deoxyribose-5-p 94.8 2 4.2E-05 40.0 16.1 145 32-190 13-172 (203)
92 PRK11572 copper homeostasis pr 94.8 1.9 4E-05 41.6 16.0 146 32-189 8-164 (248)
93 PLN02494 adenosylhomocysteinas 94.7 0.062 1.4E-06 56.3 6.4 41 377-417 250-290 (477)
94 PRK08223 hypothetical protein; 94.7 0.039 8.4E-07 54.3 4.4 36 378-413 24-60 (287)
95 PRK05600 thiamine biosynthesis 94.6 0.042 9.1E-07 56.2 4.8 35 379-413 39-74 (370)
96 cd04722 TIM_phosphate_binding 94.6 1.9 4E-05 38.5 15.2 131 30-176 6-146 (200)
97 PRK09282 pyruvate carboxylase 94.6 4.9 0.00011 43.7 20.7 211 34-246 24-251 (592)
98 PRK14177 bifunctional 5,10-met 94.6 0.11 2.5E-06 50.9 7.4 121 273-414 55-194 (284)
99 PRK14172 bifunctional 5,10-met 94.6 0.28 6E-06 48.1 10.0 119 273-412 54-190 (278)
100 PF00070 Pyr_redox: Pyridine n 94.5 0.074 1.6E-06 41.6 5.0 33 383-415 1-33 (80)
101 TIGR02320 PEP_mutase phosphoen 94.5 1.7 3.8E-05 42.8 15.6 122 69-197 70-215 (285)
102 PRK14169 bifunctional 5,10-met 94.4 0.15 3.3E-06 50.0 8.0 126 273-414 52-191 (282)
103 PF13738 Pyr_redox_3: Pyridine 94.4 0.06 1.3E-06 49.2 5.0 40 377-416 163-202 (203)
104 KOG1208 Dehydrogenases with di 94.4 0.056 1.2E-06 54.0 5.0 43 377-419 31-74 (314)
105 PRK14183 bifunctional 5,10-met 94.4 0.29 6.3E-06 48.0 9.8 124 273-412 53-189 (281)
106 PRK14179 bifunctional 5,10-met 94.4 0.21 4.5E-06 49.2 8.8 117 273-411 54-189 (284)
107 PTZ00075 Adenosylhomocysteinas 94.3 0.073 1.6E-06 55.8 5.7 41 377-417 250-290 (476)
108 PRK06153 hypothetical protein; 94.3 0.044 9.5E-07 55.9 4.0 35 379-413 174-209 (393)
109 cd01492 Aos1_SUMO Ubiquitin ac 94.3 0.056 1.2E-06 50.3 4.4 36 378-413 18-54 (197)
110 PRK09424 pntA NAD(P) transhydr 94.2 0.073 1.6E-06 56.5 5.7 39 380-418 164-202 (509)
111 PF13450 NAD_binding_8: NAD(P) 94.1 0.081 1.8E-06 40.4 4.3 29 386-414 1-29 (68)
112 cd03174 DRE_TIM_metallolyase D 94.1 5.8 0.00012 37.9 19.3 200 34-247 17-245 (265)
113 PF01262 AlaDh_PNT_C: Alanine 94.0 0.076 1.7E-06 47.9 4.7 41 378-418 17-57 (168)
114 PLN03209 translocon at the inn 94.0 0.072 1.6E-06 57.2 5.1 40 379-418 78-118 (576)
115 COG0190 FolD 5,10-methylene-te 94.0 0.75 1.6E-05 45.0 11.6 137 257-412 36-188 (283)
116 PRK14182 bifunctional 5,10-met 94.0 0.27 5.9E-06 48.3 8.7 119 273-412 52-189 (282)
117 PRK14178 bifunctional 5,10-met 94.0 0.92 2E-05 44.5 12.3 122 273-415 48-187 (279)
118 PRK14171 bifunctional 5,10-met 94.0 0.41 8.8E-06 47.2 9.8 123 273-414 54-194 (288)
119 PRK01130 N-acetylmannosamine-6 93.9 3.2 6.9E-05 38.9 15.7 118 34-172 21-145 (221)
120 PRK14187 bifunctional 5,10-met 93.9 0.43 9.4E-06 47.1 10.0 119 273-412 54-192 (294)
121 PRK12779 putative bifunctional 93.9 0.067 1.5E-06 61.1 4.9 36 379-414 304-339 (944)
122 PRK14173 bifunctional 5,10-met 93.9 0.33 7E-06 47.9 9.1 119 273-412 51-187 (287)
123 cd02940 DHPD_FMN Dihydropyrimi 93.9 2.3 5E-05 42.0 15.3 85 23-117 100-199 (299)
124 cd05211 NAD_bind_Glu_Leu_Phe_V 93.8 0.18 3.9E-06 47.7 6.9 54 354-414 3-57 (217)
125 PRK14181 bifunctional 5,10-met 93.7 0.59 1.3E-05 46.1 10.5 119 273-412 48-189 (287)
126 PRK12769 putative oxidoreducta 93.7 0.083 1.8E-06 58.0 5.1 36 379-414 325-360 (654)
127 PRK06567 putative bifunctional 93.7 0.093 2E-06 59.5 5.5 35 379-413 381-415 (1028)
128 PRK07878 molybdopterin biosynt 93.7 0.072 1.6E-06 54.9 4.3 35 379-413 40-75 (392)
129 PRK14170 bifunctional 5,10-met 93.7 0.37 8.1E-06 47.4 9.0 119 273-412 53-189 (284)
130 cd04729 NanE N-acetylmannosami 93.7 2.7 5.9E-05 39.4 14.7 119 34-172 25-149 (219)
131 PRK14040 oxaloacetate decarbox 93.6 8 0.00017 42.1 19.8 209 33-245 24-251 (593)
132 cd02810 DHOD_DHPD_FMN Dihydroo 93.6 0.97 2.1E-05 44.2 11.9 90 22-119 98-197 (289)
133 PRK13243 glyoxylate reductase; 93.5 0.11 2.5E-06 52.2 5.4 40 377-416 146-185 (333)
134 PLN02928 oxidoreductase family 93.5 0.11 2.4E-06 52.6 5.3 37 378-414 156-192 (347)
135 PRK14190 bifunctional 5,10-met 93.5 0.41 8.9E-06 47.1 9.0 119 273-412 54-190 (284)
136 PRK14166 bifunctional 5,10-met 93.5 0.26 5.7E-06 48.4 7.7 134 257-412 36-189 (282)
137 TIGR01381 E1_like_apg7 E1-like 93.4 0.089 1.9E-06 56.9 4.6 36 378-413 335-371 (664)
138 cd08205 RuBisCO_IV_RLP Ribulos 93.4 8.1 0.00018 39.5 18.6 196 68-286 120-345 (367)
139 PRK12480 D-lactate dehydrogena 93.3 0.15 3.1E-06 51.4 5.7 40 377-416 142-181 (330)
140 PRK07411 hypothetical protein; 93.3 0.093 2E-06 54.0 4.4 35 379-413 36-71 (390)
141 PRK07028 bifunctional hexulose 93.3 2 4.3E-05 44.7 14.3 134 23-173 3-138 (430)
142 PRK07424 bifunctional sterol d 93.2 0.15 3.2E-06 52.8 5.6 40 378-417 175-215 (406)
143 TIGR00693 thiE thiamine-phosph 93.1 2.3 4.9E-05 39.0 13.0 106 36-172 13-122 (196)
144 PRK14193 bifunctional 5,10-met 93.1 0.75 1.6E-05 45.3 10.1 119 273-412 54-192 (284)
145 cd00429 RPE Ribulose-5-phospha 93.1 2.9 6.4E-05 38.4 13.8 109 26-145 2-114 (211)
146 PRK14167 bifunctional 5,10-met 93.0 0.5 1.1E-05 46.8 8.8 124 273-412 53-193 (297)
147 PRK14184 bifunctional 5,10-met 93.0 0.56 1.2E-05 46.2 9.1 119 273-413 53-194 (286)
148 TIGR03315 Se_ygfK putative sel 93.0 0.12 2.5E-06 59.3 4.9 35 380-414 536-570 (1012)
149 TIGR03217 4OH_2_O_val_ald 4-hy 93.0 8.3 0.00018 38.9 17.8 198 36-245 24-241 (333)
150 PF03932 CutC: CutC family; I 93.0 1.7 3.6E-05 40.7 11.8 125 32-168 7-142 (201)
151 COG1179 Dinucleotide-utilizing 92.9 0.11 2.5E-06 49.5 4.0 35 379-413 28-63 (263)
152 PRK12771 putative glutamate sy 92.9 0.13 2.9E-06 55.3 5.1 35 379-413 135-169 (564)
153 PRK12581 oxaloacetate decarbox 92.8 15 0.00032 38.9 19.9 208 35-246 34-260 (468)
154 cd07948 DRE_TIM_HCS Saccharomy 92.8 6.3 0.00014 38.3 16.1 194 35-246 21-238 (262)
155 PRK14186 bifunctional 5,10-met 92.7 0.53 1.2E-05 46.6 8.5 124 273-412 54-190 (297)
156 PRK09853 putative selenate red 92.7 0.13 2.9E-06 58.6 4.9 36 379-414 537-572 (1019)
157 PRK06484 short chain dehydroge 92.7 0.16 3.5E-06 53.7 5.2 42 378-419 266-308 (520)
158 PRK12831 putative oxidoreducta 92.6 0.16 3.5E-06 53.4 5.1 36 379-414 138-173 (464)
159 PRK12809 putative oxidoreducta 92.6 0.15 3.3E-06 55.8 5.1 35 380-414 309-343 (639)
160 PRK14031 glutamate dehydrogena 92.6 0.32 6.9E-06 50.8 7.1 50 354-410 208-257 (444)
161 PRK11613 folP dihydropteroate 92.5 3 6.5E-05 41.1 13.4 144 34-196 36-214 (282)
162 COG1064 AdhP Zn-dependent alco 92.5 0.22 4.9E-06 50.1 5.7 39 380-418 166-204 (339)
163 PLN02616 tetrahydrofolate dehy 92.5 0.9 2E-05 46.1 9.9 119 273-412 125-263 (364)
164 PLN02516 methylenetetrahydrofo 92.5 0.62 1.4E-05 46.1 8.6 119 273-412 61-199 (299)
165 cd00945 Aldolase_Class_I Class 92.4 5.3 0.00011 36.0 14.4 91 25-120 50-151 (201)
166 PRK12810 gltD glutamate syntha 92.4 0.18 3.9E-06 53.1 5.1 36 379-414 141-176 (471)
167 PRK06701 short chain dehydroge 92.4 0.22 4.9E-06 48.7 5.5 38 377-414 42-80 (290)
168 cd01076 NAD_bind_1_Glu_DH NAD( 92.4 0.37 8E-06 45.9 6.7 52 354-412 11-63 (227)
169 PLN02852 ferredoxin-NADP+ redu 92.4 0.17 3.8E-06 53.6 4.9 36 379-414 24-61 (491)
170 TIGR02632 RhaD_aldol-ADH rhamn 92.3 0.21 4.5E-06 55.2 5.6 42 377-418 410-452 (676)
171 PRK07201 short chain dehydroge 92.3 0.19 4.2E-06 54.7 5.3 42 377-418 367-409 (657)
172 PRK08324 short chain dehydroge 92.3 0.19 4.1E-06 55.5 5.3 42 377-418 418-460 (681)
173 PRK14185 bifunctional 5,10-met 92.2 1.1 2.4E-05 44.3 9.9 118 273-411 53-192 (293)
174 PF01791 DeoC: DeoC/LacD famil 92.2 1.8 3.9E-05 41.2 11.3 144 37-195 20-191 (236)
175 PRK13813 orotidine 5'-phosphat 92.2 6.2 0.00013 36.8 14.7 136 22-171 2-144 (215)
176 TIGR01949 AroFGH_arch predicte 92.1 1.6 3.4E-05 42.3 10.9 153 33-199 33-198 (258)
177 PRK00257 erythronate-4-phospha 92.1 0.27 5.9E-06 50.4 5.9 38 377-414 112-149 (381)
178 cd05313 NAD_bind_2_Glu_DH NAD( 92.1 0.45 9.7E-06 46.1 7.0 51 354-411 18-69 (254)
179 TIGR02090 LEU1_arch isopropylm 92.1 15 0.00033 37.4 19.5 193 35-245 21-237 (363)
180 PF01791 DeoC: DeoC/LacD famil 92.0 1.4 3E-05 42.0 10.3 142 24-170 55-225 (236)
181 PRK07259 dihydroorotate dehydr 92.0 0.92 2E-05 44.8 9.4 83 26-117 94-188 (301)
182 PRK07985 oxidoreductase; Provi 92.0 0.23 5E-06 48.7 5.1 36 378-413 46-82 (294)
183 TIGR00561 pntA NAD(P) transhyd 92.0 0.27 5.9E-06 52.2 5.8 39 380-418 163-201 (511)
184 TIGR01316 gltA glutamate synth 91.9 0.23 4.9E-06 52.0 5.2 37 378-414 130-166 (449)
185 PRK14174 bifunctional 5,10-met 91.9 0.55 1.2E-05 46.5 7.5 121 273-414 53-197 (295)
186 PRK05718 keto-hydroxyglutarate 91.9 2.8 6.1E-05 39.5 12.0 119 25-172 16-134 (212)
187 PRK05855 short chain dehydroge 91.9 0.23 5E-06 52.7 5.3 41 378-418 312-353 (582)
188 PRK06128 oxidoreductase; Provi 91.8 0.27 5.9E-06 48.2 5.4 37 378-414 52-89 (300)
189 cd00564 TMP_TenI Thiamine mono 91.8 4.1 8.9E-05 36.7 12.8 107 36-172 12-121 (196)
190 PRK11749 dihydropyrimidine deh 91.8 0.21 4.5E-06 52.3 4.8 36 379-414 138-173 (457)
191 PLN02897 tetrahydrofolate dehy 91.8 1.1 2.5E-05 45.1 9.6 119 273-412 108-246 (345)
192 PRK12814 putative NADPH-depend 91.8 0.22 4.7E-06 54.8 5.0 36 379-414 191-226 (652)
193 PRK06552 keto-hydroxyglutarate 91.7 4.5 9.9E-05 38.1 13.2 120 25-172 14-135 (213)
194 KOG1014 17 beta-hydroxysteroid 91.7 0.23 4.9E-06 49.1 4.5 39 381-419 49-88 (312)
195 PRK15469 ghrA bifunctional gly 91.7 0.29 6.3E-06 48.9 5.4 40 377-416 132-171 (312)
196 cd06556 ICL_KPHMT Members of t 91.7 5.8 0.00013 38.1 14.1 120 69-203 64-201 (240)
197 PRK05562 precorrin-2 dehydroge 91.7 0.3 6.4E-06 46.4 5.1 38 377-414 21-58 (223)
198 TIGR00292 thiazole biosynthesi 91.7 0.22 4.8E-06 48.1 4.4 34 382-415 22-55 (254)
199 PLN02602 lactate dehydrogenase 91.6 0.28 6E-06 49.8 5.2 37 382-418 38-76 (350)
200 PRK12778 putative bifunctional 91.6 0.25 5.4E-06 55.2 5.3 35 379-413 429-463 (752)
201 cd02801 DUS_like_FMN Dihydrour 91.6 1.3 2.7E-05 41.7 9.4 92 19-117 51-157 (231)
202 PRK05581 ribulose-phosphate 3- 91.5 3.4 7.4E-05 38.4 12.3 111 23-144 3-117 (220)
203 TIGR01318 gltD_gamma_fam gluta 91.5 0.27 5.8E-06 51.8 5.2 36 379-414 139-174 (467)
204 PRK09880 L-idonate 5-dehydroge 91.5 0.33 7.1E-06 48.5 5.6 39 380-418 169-208 (343)
205 COG2072 TrkA Predicted flavopr 91.5 0.23 5E-06 52.0 4.7 39 377-415 171-209 (443)
206 TIGR01949 AroFGH_arch predicte 91.5 4.2 9.1E-05 39.2 13.1 138 24-168 71-222 (258)
207 PRK15438 erythronate-4-phospha 91.4 0.4 8.7E-06 49.1 6.2 37 377-413 112-148 (378)
208 PRK04176 ribulose-1,5-biphosph 91.4 0.41 9E-06 46.3 6.0 33 382-414 26-58 (257)
209 cd04740 DHOD_1B_like Dihydroor 91.3 3.5 7.6E-05 40.5 12.6 85 76-173 88-186 (296)
210 TIGR01163 rpe ribulose-phospha 91.2 3.9 8.4E-05 37.7 12.2 79 28-117 3-85 (210)
211 PRK07226 fructose-bisphosphate 91.2 3 6.5E-05 40.5 11.9 153 33-200 36-203 (267)
212 TIGR00126 deoC deoxyribose-pho 91.2 9.8 0.00021 35.8 14.8 145 32-190 14-173 (211)
213 PF00682 HMGL-like: HMGL-like 91.2 14 0.00029 34.9 16.9 200 34-245 12-234 (237)
214 PRK14851 hypothetical protein; 91.1 0.25 5.4E-06 54.4 4.6 35 379-413 41-76 (679)
215 PRK10415 tRNA-dihydrouridine s 91.1 8.1 0.00018 38.7 15.0 150 26-208 67-232 (321)
216 PTZ00245 ubiquitin activating 91.1 0.27 5.9E-06 47.5 4.2 36 378-413 23-59 (287)
217 PRK06046 alanine dehydrogenase 91.1 0.28 6E-06 49.2 4.6 39 381-419 129-169 (326)
218 PRK07232 bifunctional malic en 91.0 0.88 1.9E-05 50.6 8.7 100 291-413 112-220 (752)
219 TIGR00736 nifR3_rel_arch TIM-b 91.0 10 0.00023 36.2 15.0 89 25-121 69-171 (231)
220 PRK00366 ispG 4-hydroxy-3-meth 91.0 4.4 9.6E-05 40.9 12.8 300 14-363 17-351 (360)
221 COG1635 THI4 Ribulose 1,5-bisp 90.9 0.28 6E-06 46.5 4.0 33 382-414 31-63 (262)
222 PRK07574 formate dehydrogenase 90.9 0.35 7.5E-06 49.7 5.1 38 377-414 188-225 (385)
223 PRK06436 glycerate dehydrogena 90.9 0.38 8.2E-06 47.9 5.2 38 377-414 118-155 (303)
224 PLN02686 cinnamoyl-CoA reducta 90.9 0.39 8.4E-06 48.8 5.5 41 377-417 49-90 (367)
225 cd07944 DRE_TIM_HOA_like 4-hyd 90.8 3.4 7.4E-05 40.2 11.7 103 83-194 5-123 (266)
226 PRK04148 hypothetical protein; 90.8 0.39 8.4E-06 42.0 4.6 38 380-418 16-53 (134)
227 cd08230 glucose_DH Glucose deh 90.7 0.42 9.2E-06 47.9 5.6 33 380-412 172-204 (355)
228 PRK08195 4-hyroxy-2-oxovalerat 90.7 19 0.00042 36.3 17.4 199 35-245 24-242 (337)
229 PLN02477 glutamate dehydrogena 90.7 0.65 1.4E-05 48.1 6.9 53 354-413 186-239 (410)
230 PRK08605 D-lactate dehydrogena 90.6 0.38 8.1E-06 48.4 5.0 40 377-416 142-182 (332)
231 PLN00093 geranylgeranyl diphos 90.6 0.31 6.8E-06 51.1 4.6 34 382-415 40-73 (450)
232 PRK12775 putative trifunctiona 90.5 0.32 7E-06 56.1 5.0 35 380-414 429-463 (1006)
233 PRK07226 fructose-bisphosphate 90.5 5.4 0.00012 38.8 12.9 126 36-168 93-226 (267)
234 PTZ00079 NADP-specific glutama 90.4 0.73 1.6E-05 48.2 7.0 54 353-413 216-270 (454)
235 PLN03139 formate dehydrogenase 90.4 0.42 9.1E-06 49.1 5.2 38 377-414 195-232 (386)
236 PRK14042 pyruvate carboxylase 90.4 31 0.00067 37.7 21.1 209 36-246 26-251 (596)
237 TIGR03366 HpnZ_proposed putati 90.4 0.49 1.1E-05 45.9 5.5 39 380-418 120-159 (280)
238 PRK13984 putative oxidoreducta 90.4 0.38 8.2E-06 52.3 5.1 36 379-414 281-316 (604)
239 cd07944 DRE_TIM_HOA_like 4-hyd 90.3 18 0.0004 35.1 16.6 200 34-245 18-236 (266)
240 PRK12862 malic enzyme; Reviewe 90.3 1.3 2.8E-05 49.6 9.2 98 292-412 121-227 (763)
241 TIGR01202 bchC 2-desacetyl-2-h 90.3 0.44 9.5E-06 47.0 5.2 39 380-418 144-183 (308)
242 PRK01747 mnmC bifunctional tRN 90.2 0.35 7.5E-06 53.2 4.7 33 382-414 261-293 (662)
243 PRK09496 trkA potassium transp 90.1 0.66 1.4E-05 48.2 6.5 40 379-418 229-268 (453)
244 TIGR00737 nifR3_yhdG putative 90.1 2.7 5.8E-05 41.9 10.6 91 22-118 62-167 (319)
245 PRK05579 bifunctional phosphop 90.1 0.78 1.7E-05 47.4 6.9 55 351-414 167-238 (399)
246 CHL00200 trpA tryptophan synth 90.0 13 0.00029 36.1 15.1 36 28-63 21-56 (263)
247 cd08237 ribitol-5-phosphate_DH 89.9 0.53 1.1E-05 47.1 5.5 39 380-418 163-203 (341)
248 cd05212 NAD_bind_m-THF_DH_Cycl 89.8 1 2.2E-05 39.6 6.5 36 377-412 24-60 (140)
249 PF02882 THF_DHG_CYH_C: Tetrah 89.8 0.88 1.9E-05 41.0 6.2 48 355-413 21-69 (160)
250 TIGR01317 GOGAT_sm_gam glutama 89.8 0.46 1E-05 50.3 5.1 35 380-414 142-176 (485)
251 PRK14168 bifunctional 5,10-met 89.7 1.4 3.1E-05 43.6 8.1 124 273-412 55-197 (297)
252 PLN02256 arogenate dehydrogena 89.6 0.77 1.7E-05 45.7 6.2 37 379-415 34-70 (304)
253 PRK06487 glycerate dehydrogena 89.5 0.54 1.2E-05 47.0 5.1 37 377-413 144-180 (317)
254 PRK13111 trpA tryptophan synth 89.5 22 0.00047 34.6 16.2 34 28-61 18-51 (258)
255 PRK08410 2-hydroxyacid dehydro 89.4 0.57 1.2E-05 46.7 5.2 38 377-414 141-178 (311)
256 cd00331 IGPS Indole-3-glycerol 89.3 11 0.00025 35.0 13.7 111 38-170 33-145 (217)
257 COG1063 Tdh Threonine dehydrog 89.3 0.62 1.3E-05 47.1 5.4 38 381-418 169-207 (350)
258 PF10727 Rossmann-like: Rossma 89.3 0.14 3.1E-06 44.2 0.7 38 382-419 11-49 (127)
259 KOG1201 Hydroxysteroid 17-beta 89.2 0.55 1.2E-05 46.2 4.7 41 377-417 34-75 (300)
260 cd04735 OYE_like_4_FMN Old yel 89.2 2.3 5E-05 43.1 9.5 87 30-119 134-256 (353)
261 PLN02463 lycopene beta cyclase 89.2 0.46 1E-05 49.8 4.5 33 382-414 29-61 (447)
262 PRK11730 fadB multifunctional 89.1 0.51 1.1E-05 52.5 5.0 37 382-418 314-350 (715)
263 PRK06199 ornithine cyclodeamin 89.1 0.47 1E-05 48.7 4.4 39 381-419 155-196 (379)
264 PRK14852 hypothetical protein; 89.1 0.42 9.2E-06 54.2 4.4 107 137-245 84-207 (989)
265 cd02810 DHOD_DHPD_FMN Dihydroo 89.0 8.6 0.00019 37.5 13.2 88 76-174 97-197 (289)
266 TIGR03201 dearomat_had 6-hydro 89.0 0.57 1.2E-05 46.9 4.9 39 380-418 166-204 (349)
267 TIGR01327 PGDH D-3-phosphoglyc 89.0 0.66 1.4E-05 49.7 5.6 37 377-413 134-170 (525)
268 TIGR00612 ispG_gcpE 1-hydroxy- 89.0 1.7 3.6E-05 43.6 7.9 62 135-198 16-77 (346)
269 PF00289 CPSase_L_chain: Carba 89.0 0.52 1.1E-05 39.7 3.9 35 382-416 3-37 (110)
270 COG0821 gcpE 1-hydroxy-2-methy 89.0 1.8 3.9E-05 43.3 8.0 144 136-292 19-178 (361)
271 PLN02927 antheraxanthin epoxid 89.0 0.49 1.1E-05 52.0 4.7 35 380-414 80-114 (668)
272 PRK13523 NADPH dehydrogenase N 88.9 3.2 6.9E-05 41.9 10.2 88 30-120 132-249 (337)
273 PLN02657 3,8-divinyl protochlo 88.9 0.69 1.5E-05 47.5 5.5 39 378-416 57-96 (390)
274 PLN02985 squalene monooxygenas 88.9 0.52 1.1E-05 50.3 4.7 34 381-414 43-76 (514)
275 PRK00366 ispG 4-hydroxy-3-meth 88.9 1.7 3.7E-05 43.8 7.9 62 135-198 24-85 (360)
276 PRK06823 ornithine cyclodeamin 88.8 0.54 1.2E-05 47.0 4.6 39 381-419 128-168 (315)
277 PRK07259 dihydroorotate dehydr 88.8 5 0.00011 39.5 11.4 38 76-121 90-128 (301)
278 PTZ00188 adrenodoxin reductase 88.8 0.63 1.4E-05 49.3 5.1 35 380-414 38-73 (506)
279 PLN02572 UDP-sulfoquinovose sy 88.8 0.72 1.6E-05 48.2 5.6 36 377-412 43-79 (442)
280 cd08239 THR_DH_like L-threonin 88.7 0.69 1.5E-05 45.8 5.3 39 380-418 163-202 (339)
281 TIGR00736 nifR3_rel_arch TIM-b 88.7 13 0.00029 35.5 13.7 111 76-198 66-196 (231)
282 PRK08132 FAD-dependent oxidore 88.7 0.48 1E-05 50.8 4.3 35 381-415 23-57 (547)
283 PRK06932 glycerate dehydrogena 88.6 0.66 1.4E-05 46.3 5.0 38 377-414 143-180 (314)
284 PRK13307 bifunctional formalde 88.6 6.6 0.00014 40.5 12.3 133 22-173 171-306 (391)
285 PRK08261 fabG 3-ketoacyl-(acyl 88.6 0.66 1.4E-05 48.3 5.2 36 378-413 207-243 (450)
286 COG0493 GltD NADPH-dependent g 88.5 0.65 1.4E-05 48.9 5.1 38 377-414 119-156 (457)
287 TIGR02437 FadB fatty oxidation 88.5 0.6 1.3E-05 51.9 5.1 38 381-418 313-350 (714)
288 PRK14030 glutamate dehydrogena 88.4 1.2 2.7E-05 46.5 7.0 50 353-409 207-256 (445)
289 TIGR00190 thiC thiamine biosyn 88.4 2.9 6.3E-05 42.8 9.3 227 28-283 69-321 (423)
290 PRK06407 ornithine cyclodeamin 88.4 0.62 1.3E-05 46.3 4.6 39 381-419 117-157 (301)
291 TIGR01182 eda Entner-Doudoroff 88.3 7.2 0.00016 36.6 11.4 117 26-174 10-129 (204)
292 PLN02740 Alcohol dehydrogenase 88.2 0.78 1.7E-05 46.7 5.3 39 380-418 198-237 (381)
293 COG0476 ThiF Dinucleotide-util 88.1 0.57 1.2E-05 45.1 4.1 35 380-414 29-64 (254)
294 PRK13581 D-3-phosphoglycerate 88.1 0.8 1.7E-05 49.1 5.5 37 377-413 136-172 (526)
295 cd05188 MDR Medium chain reduc 88.0 0.78 1.7E-05 43.1 4.9 39 380-418 134-172 (271)
296 cd05312 NAD_bind_1_malic_enz N 88.0 1 2.2E-05 44.2 5.7 48 355-413 10-68 (279)
297 TIGR02822 adh_fam_2 zinc-bindi 87.9 0.95 2.1E-05 45.1 5.7 39 380-418 165-203 (329)
298 cd06557 KPHMT-like Ketopantoat 87.9 7.5 0.00016 37.7 11.6 147 46-204 29-204 (254)
299 KOG0024 Sorbitol dehydrogenase 87.9 0.9 2E-05 45.3 5.3 38 380-417 169-207 (354)
300 PRK13352 thiamine biosynthesis 87.9 3.1 6.7E-05 42.8 9.2 229 26-283 67-324 (431)
301 PRK12999 pyruvate carboxylase; 87.9 44 0.00095 39.5 19.8 209 36-245 555-787 (1146)
302 cd07941 DRE_TIM_LeuA3 Desulfob 87.9 28 0.0006 33.9 16.8 204 34-246 18-249 (273)
303 PRK07589 ornithine cyclodeamin 87.8 0.7 1.5E-05 46.8 4.6 39 381-419 129-169 (346)
304 PRK06481 fumarate reductase fl 87.7 0.65 1.4E-05 49.4 4.5 33 382-414 62-94 (506)
305 cd04739 DHOD_like Dihydroorota 87.6 5.1 0.00011 40.2 10.7 88 23-120 100-197 (325)
306 cd03316 MR_like Mandelate race 87.6 20 0.00043 36.1 15.0 176 20-215 124-311 (357)
307 PF02423 OCD_Mu_crystall: Orni 87.5 0.67 1.4E-05 46.2 4.3 40 381-420 128-169 (313)
308 KOG2018 Predicted dinucleotide 87.5 0.7 1.5E-05 45.8 4.2 36 378-413 71-107 (430)
309 PRK11790 D-3-phosphoglycerate 87.5 0.9 2E-05 47.1 5.3 38 377-414 147-184 (409)
310 TIGR00742 yjbN tRNA dihydrouri 87.5 23 0.0005 35.4 15.2 93 26-121 57-164 (318)
311 PRK11858 aksA trans-homoaconit 87.4 37 0.0008 34.8 19.7 193 35-245 25-241 (378)
312 cd08210 RLP_RrRLP Ribulose bis 87.4 12 0.00027 38.2 13.4 121 68-199 116-249 (364)
313 PF04551 GcpE: GcpE protein; 87.4 2.2 4.8E-05 43.0 7.8 62 135-198 13-79 (359)
314 PF00208 ELFV_dehydrog: Glutam 87.4 1.7 3.7E-05 41.8 6.8 52 354-411 11-63 (244)
315 TIGR01496 DHPS dihydropteroate 87.4 24 0.00051 34.2 14.8 139 33-190 20-190 (257)
316 TIGR02818 adh_III_F_hyde S-(hy 87.3 1 2.2E-05 45.6 5.5 39 380-418 185-224 (368)
317 cd08245 CAD Cinnamyl alcohol d 87.3 0.93 2E-05 44.5 5.1 39 380-418 162-200 (330)
318 TIGR02371 ala_DH_arch alanine 87.2 0.78 1.7E-05 46.0 4.6 39 381-419 128-168 (325)
319 cd03319 L-Ala-DL-Glu_epimerase 87.2 33 0.00071 33.9 18.8 173 26-218 126-303 (316)
320 PRK09414 glutamate dehydrogena 87.2 1.5 3.3E-05 45.8 6.8 51 354-411 212-263 (445)
321 TIGR01496 DHPS dihydropteroate 87.1 2.5 5.4E-05 41.0 7.8 108 82-202 8-127 (257)
322 cd02911 arch_FMN Archeal FMN-b 87.0 27 0.00058 33.3 14.7 87 25-120 74-174 (233)
323 PLN02819 lysine-ketoglutarate 86.7 0.7 1.5E-05 53.1 4.3 40 380-419 568-621 (1042)
324 cd04731 HisF The cyclase subun 86.7 28 0.0006 33.0 14.8 191 32-245 26-241 (243)
325 COG1052 LdhA Lactate dehydroge 86.7 1 2.2E-05 45.3 5.0 38 377-414 142-179 (324)
326 cd08281 liver_ADH_like1 Zinc-d 86.7 1.1 2.4E-05 45.3 5.4 39 380-418 191-230 (371)
327 TIGR02441 fa_ox_alpha_mit fatt 86.7 0.83 1.8E-05 51.0 4.8 38 381-418 335-372 (737)
328 cd08295 double_bond_reductase_ 86.6 1 2.3E-05 44.6 5.1 39 380-418 151-190 (338)
329 PLN02712 arogenate dehydrogena 86.5 1.2 2.6E-05 49.1 5.8 39 377-415 365-403 (667)
330 PF00809 Pterin_bind: Pterin b 86.4 0.55 1.2E-05 44.0 2.8 111 80-202 2-125 (210)
331 TIGR03451 mycoS_dep_FDH mycoth 86.4 1.2 2.6E-05 44.7 5.5 39 380-418 176-215 (358)
332 PTZ00367 squalene epoxidase; P 86.3 0.92 2E-05 49.1 4.8 34 381-414 33-66 (567)
333 PRK09284 thiamine biosynthesis 86.3 3.4 7.4E-05 43.9 8.6 228 26-283 222-474 (607)
334 KOG1298 Squalene monooxygenase 86.3 0.74 1.6E-05 47.0 3.7 34 383-416 47-80 (509)
335 cd08300 alcohol_DH_class_III c 86.3 1.3 2.8E-05 44.7 5.7 39 380-418 186-225 (368)
336 PLN02444 HMP-P synthase 86.2 3.8 8.2E-05 43.6 8.9 134 26-166 227-374 (642)
337 PRK15409 bifunctional glyoxyla 86.2 1.2 2.5E-05 44.8 5.1 38 377-414 141-179 (323)
338 PLN02306 hydroxypyruvate reduc 86.1 1.1 2.5E-05 46.0 5.1 38 377-414 161-199 (386)
339 cd00739 DHPS DHPS subgroup of 86.1 22 0.00047 34.5 13.8 144 33-196 21-201 (257)
340 PRK06015 keto-hydroxyglutarate 86.1 14 0.0003 34.6 11.9 120 26-174 6-125 (201)
341 COG0269 SgbH 3-hexulose-6-phos 86.1 7.3 0.00016 36.7 9.9 201 22-272 2-204 (217)
342 TIGR03329 Phn_aa_oxid putative 86.0 0.92 2E-05 47.5 4.5 32 382-413 25-58 (460)
343 PRK00507 deoxyribose-phosphate 86.0 32 0.00069 32.6 14.8 143 32-188 18-175 (221)
344 PLN02334 ribulose-phosphate 3- 85.9 32 0.00068 32.5 15.7 112 22-144 6-123 (229)
345 PRK08195 4-hyroxy-2-oxovalerat 85.7 13 0.00028 37.5 12.5 149 82-246 9-181 (337)
346 KOG0685 Flavin-containing amin 85.7 1.1 2.3E-05 46.9 4.6 32 380-411 20-52 (498)
347 COG1148 HdrA Heterodisulfide r 85.6 1 2.3E-05 47.2 4.5 35 381-415 124-158 (622)
348 PLN03154 putative allyl alcoho 85.6 1.2 2.6E-05 44.8 4.9 39 380-418 158-197 (348)
349 cd07940 DRE_TIM_IPMS 2-isoprop 85.5 35 0.00076 33.0 15.0 197 34-246 18-243 (268)
350 PRK11154 fadJ multifunctional 85.5 1.1 2.4E-05 49.8 5.0 37 381-417 309-346 (708)
351 PRK10309 galactitol-1-phosphat 85.5 1.4 3.1E-05 43.8 5.5 39 380-418 160-199 (347)
352 KOG0069 Glyoxylate/hydroxypyru 85.4 1.1 2.4E-05 45.1 4.4 40 377-416 158-197 (336)
353 PRK08294 phenol 2-monooxygenas 85.4 0.81 1.8E-05 50.1 3.9 34 382-415 33-67 (634)
354 cd08301 alcohol_DH_plants Plan 85.4 1.4 3.1E-05 44.3 5.5 39 380-418 187-226 (369)
355 TIGR02440 FadJ fatty oxidation 85.4 1.2 2.5E-05 49.5 5.2 36 382-417 305-341 (699)
356 cd08293 PTGR2 Prostaglandin re 85.3 1.3 2.7E-05 44.0 4.9 38 381-418 155-194 (345)
357 TIGR00612 ispG_gcpE 1-hydroxy- 85.3 20 0.00043 36.1 13.0 148 32-195 30-194 (346)
358 COG0111 SerA Phosphoglycerate 85.2 1.4 3E-05 44.3 5.1 118 294-413 37-174 (324)
359 cd01079 NAD_bind_m-THF_DH NAD 85.2 1.6 3.5E-05 40.5 5.2 35 377-411 58-93 (197)
360 PRK02227 hypothetical protein; 85.1 8 0.00017 37.1 9.9 98 106-205 15-126 (238)
361 PRK13977 myosin-cross-reactive 85.1 1.5 3.2E-05 47.3 5.6 38 377-414 18-59 (576)
362 cd03174 DRE_TIM_metallolyase D 85.1 13 0.00028 35.4 11.8 85 83-177 4-98 (265)
363 COG0281 SfcA Malic enzyme [Ene 85.1 1.9 4.1E-05 44.5 6.0 127 259-413 98-234 (432)
364 PRK00311 panB 3-methyl-2-oxobu 85.0 13 0.00028 36.3 11.5 124 69-204 67-207 (264)
365 cd00377 ICL_PEPM Members of th 85.0 28 0.00062 33.3 13.9 123 68-201 60-204 (243)
366 cd08231 MDR_TM0436_like Hypoth 84.9 1.3 2.9E-05 44.3 4.9 39 380-418 177-216 (361)
367 KOG0409 Predicted dehydrogenas 84.7 1.8 4E-05 42.7 5.5 40 381-420 35-74 (327)
368 TIGR02825 B4_12hDH leukotriene 84.6 1.5 3.2E-05 43.2 5.0 39 380-418 138-177 (325)
369 cd07943 DRE_TIM_HOA 4-hydroxy- 84.6 15 0.00033 35.4 12.0 103 82-194 6-126 (263)
370 PTZ00139 Succinate dehydrogena 84.5 1.1 2.4E-05 48.9 4.4 31 383-413 31-61 (617)
371 PF00743 FMO-like: Flavin-bind 84.5 1.2 2.7E-05 47.7 4.6 38 377-414 179-216 (531)
372 cd02809 alpha_hydroxyacid_oxid 84.4 37 0.00081 33.5 14.9 79 28-119 120-201 (299)
373 PRK10669 putative cation:proto 84.4 1.1 2.5E-05 48.2 4.4 38 382-419 418-455 (558)
374 PF01081 Aldolase: KDPG and KH 84.4 11 0.00023 35.1 10.3 121 25-174 9-129 (196)
375 PRK10415 tRNA-dihydrouridine s 84.4 31 0.00068 34.5 14.4 94 19-124 6-103 (321)
376 TIGR01037 pyrD_sub1_fam dihydr 84.4 29 0.00063 34.1 14.1 92 19-122 8-129 (300)
377 PLN02586 probable cinnamyl alc 84.4 1.5 3.3E-05 44.2 5.1 36 380-415 183-218 (360)
378 TIGR03217 4OH_2_O_val_ald 4-hy 84.4 16 0.00036 36.7 12.4 148 82-246 8-180 (333)
379 PLN02342 ornithine carbamoyltr 84.2 49 0.0011 33.6 15.7 187 198-412 13-226 (348)
380 PLN02827 Alcohol dehydrogenase 84.1 1.7 3.8E-05 44.1 5.4 39 380-418 193-232 (378)
381 PRK13585 1-(5-phosphoribosyl)- 84.1 38 0.00083 31.9 14.5 150 32-199 31-199 (241)
382 PF03949 Malic_M: Malic enzyme 84.1 2 4.4E-05 41.6 5.4 48 355-413 10-68 (255)
383 cd04730 NPD_like 2-Nitropropan 84.0 20 0.00044 33.6 12.3 127 23-174 3-130 (236)
384 cd00762 NAD_bind_malic_enz NAD 84.0 1.7 3.6E-05 42.1 4.9 37 377-413 21-68 (254)
385 TIGR01037 pyrD_sub1_fam dihydr 84.0 8.2 0.00018 38.0 10.0 84 26-118 93-189 (300)
386 cd08299 alcohol_DH_class_I_II_ 83.8 1.6 3.4E-05 44.3 4.9 39 380-418 190-229 (373)
387 cd02933 OYE_like_FMN Old yello 83.8 12 0.00025 37.9 11.1 88 30-119 142-262 (338)
388 TIGR01373 soxB sarcosine oxida 83.8 1.4 3.1E-05 45.0 4.6 33 381-413 30-64 (407)
389 TIGR01316 gltA glutamate synth 83.7 1.6 3.5E-05 45.6 5.1 35 379-413 270-304 (449)
390 PRK12831 putative oxidoreducta 83.7 1.5 3.3E-05 46.1 4.9 35 379-413 279-313 (464)
391 PRK11815 tRNA-dihydrouridine s 83.7 10 0.00023 38.1 10.7 91 25-118 66-171 (333)
392 COG0821 gcpE 1-hydroxy-2-methy 83.6 29 0.00063 34.9 13.3 242 34-322 34-300 (361)
393 PRK09754 phenylpropionate diox 83.6 1.7 3.6E-05 44.5 5.1 34 380-413 143-176 (396)
394 COG1086 Predicted nucleoside-d 83.6 1.7 3.6E-05 46.5 5.0 40 378-417 247-288 (588)
395 cd02801 DUS_like_FMN Dihydrour 83.6 37 0.0008 31.6 13.9 83 26-121 3-90 (231)
396 cd08242 MDR_like Medium chain 83.5 1.7 3.7E-05 42.5 4.9 39 380-418 155-193 (319)
397 COG0036 Rpe Pentose-5-phosphat 83.5 41 0.00089 31.9 14.6 85 22-119 2-92 (220)
398 cd08277 liver_alcohol_DH_like 83.5 2 4.4E-05 43.2 5.6 39 380-418 184-223 (365)
399 cd04741 DHOD_1A_like Dihydroor 83.4 42 0.00091 33.1 14.7 83 26-116 94-191 (294)
400 PLN02697 lycopene epsilon cycl 83.3 1.3 2.9E-05 47.4 4.3 32 382-413 109-140 (529)
401 COG1830 FbaB DhnA-type fructos 83.3 41 0.00088 32.8 13.9 140 38-182 99-249 (265)
402 PRK10550 tRNA-dihydrouridine s 83.2 11 0.00025 37.5 10.7 148 26-207 65-231 (312)
403 PRK00278 trpC indole-3-glycero 83.2 41 0.0009 32.5 14.3 110 38-171 72-185 (260)
404 cd08296 CAD_like Cinnamyl alco 83.2 1.9 4E-05 42.7 5.1 38 380-417 163-200 (333)
405 PLN00128 Succinate dehydrogena 83.2 1.4 3E-05 48.4 4.5 31 383-413 52-82 (635)
406 PRK05286 dihydroorotate dehydr 83.1 37 0.00079 34.3 14.4 96 76-176 136-248 (344)
407 cd08234 threonine_DH_like L-th 83.1 1.7 3.7E-05 42.7 4.7 39 380-418 159-198 (334)
408 PRK15317 alkyl hydroperoxide r 83.0 1.5 3.2E-05 46.7 4.6 32 381-412 211-242 (517)
409 cd08289 MDR_yhfp_like Yhfp put 82.9 1.9 4.1E-05 42.1 5.0 38 381-418 147-185 (326)
410 TIGR03326 rubisco_III ribulose 82.9 64 0.0014 33.6 16.7 202 68-287 134-364 (412)
411 PLN02661 Putative thiazole syn 82.9 1.6 3.4E-05 44.4 4.4 34 381-414 92-126 (357)
412 cd08207 RLP_NonPhot Ribulose b 82.9 57 0.0012 33.9 15.8 201 68-287 133-361 (406)
413 PLN02172 flavin-containing mon 82.8 1.5 3.4E-05 46.1 4.5 38 377-414 200-237 (461)
414 PRK04165 acetyl-CoA decarbonyl 82.7 28 0.00061 36.6 13.6 158 22-201 90-269 (450)
415 PRK11199 tyrA bifunctional cho 82.7 1.7 3.7E-05 44.4 4.7 34 381-414 98-132 (374)
416 cd08259 Zn_ADH5 Alcohol dehydr 82.6 2 4.4E-05 41.8 5.1 39 380-418 162-201 (332)
417 cd08294 leukotriene_B4_DH_like 82.5 2.1 4.5E-05 41.9 5.1 39 380-418 143-182 (329)
418 cd08233 butanediol_DH_like (2R 82.5 2.3 4.9E-05 42.4 5.5 39 380-418 172-211 (351)
419 COG0334 GdhA Glutamate dehydro 82.5 2.5 5.5E-05 43.5 5.7 53 354-413 187-239 (411)
420 KOG2015 NEDD8-activating compl 82.4 1.2 2.6E-05 44.3 3.2 33 380-412 39-72 (422)
421 PF01964 ThiC: ThiC family; I 82.4 2.1 4.6E-05 43.8 5.1 228 26-283 66-320 (420)
422 cd08260 Zn_ADH6 Alcohol dehydr 82.3 2.1 4.5E-05 42.4 5.1 39 380-418 165-203 (345)
423 PTZ00058 glutathione reductase 82.3 1.7 3.6E-05 47.0 4.6 31 383-413 50-80 (561)
424 cd02803 OYE_like_FMN_family Ol 82.2 10 0.00022 37.6 10.0 87 30-119 131-249 (327)
425 PRK07573 sdhA succinate dehydr 82.1 1.6 3.5E-05 47.9 4.5 31 382-412 36-66 (640)
426 TIGR00521 coaBC_dfp phosphopan 82.1 3.7 8E-05 42.3 6.9 56 351-414 163-235 (390)
427 PRK13748 putative mercuric red 82.0 1.8 3.8E-05 46.5 4.7 32 382-413 99-130 (561)
428 cd05284 arabinose_DH_like D-ar 82.0 2 4.4E-05 42.3 4.8 39 380-418 167-206 (340)
429 PLN02695 GDP-D-mannose-3',5'-e 82.0 2.1 4.5E-05 43.5 5.0 38 377-414 17-55 (370)
430 TIGR01408 Ube1 ubiquitin-activ 82.0 1.6 3.4E-05 50.4 4.4 35 379-413 22-57 (1008)
431 PLN02514 cinnamyl-alcohol dehy 81.8 2.2 4.8E-05 42.9 5.1 37 380-416 180-216 (357)
432 PLN02487 zeta-carotene desatur 81.8 2 4.2E-05 46.6 4.9 34 381-414 75-108 (569)
433 PLN02712 arogenate dehydrogena 81.7 2.9 6.4E-05 46.1 6.3 36 380-415 51-86 (667)
434 PRK12858 tagatose 1,6-diphosph 81.7 52 0.0011 33.3 14.8 168 29-203 42-251 (340)
435 PRK04208 rbcL ribulose bisopho 81.6 73 0.0016 33.7 16.2 201 68-286 150-394 (468)
436 KOG0399 Glutamate synthase [Am 81.6 2.1 4.5E-05 49.2 5.0 37 378-414 1782-1818(2142)
437 TIGR03140 AhpF alkyl hydropero 81.5 1.8 4E-05 46.1 4.6 32 380-411 211-242 (515)
438 TIGR01372 soxA sarcosine oxida 81.5 1.7 3.6E-05 50.2 4.5 34 381-414 163-196 (985)
439 PLN02464 glycerol-3-phosphate 81.4 1.9 4E-05 47.3 4.6 32 382-413 72-103 (627)
440 COG2423 Predicted ornithine cy 81.4 2 4.3E-05 43.3 4.5 39 381-419 130-170 (330)
441 PRK11320 prpB 2-methylisocitra 81.3 60 0.0013 32.2 15.9 119 69-197 70-206 (292)
442 TIGR00343 pyridoxal 5'-phospha 81.1 16 0.00035 35.9 10.4 89 66-179 56-147 (287)
443 cd07938 DRE_TIM_HMGL 3-hydroxy 81.0 57 0.0012 31.8 17.5 141 104-245 79-252 (274)
444 cd08253 zeta_crystallin Zeta-c 80.8 2.6 5.6E-05 40.5 5.1 39 380-418 144-183 (325)
445 PRK08227 autoinducer 2 aldolas 80.8 22 0.00047 34.7 11.3 121 36-168 94-221 (264)
446 PLN00112 malate dehydrogenase 80.8 2.2 4.7E-05 44.7 4.7 37 382-418 101-147 (444)
447 cd08255 2-desacetyl-2-hydroxye 80.7 2.9 6.2E-05 39.9 5.3 38 380-417 97-135 (277)
448 KOG2017 Molybdopterin synthase 80.5 1.2 2.5E-05 44.8 2.4 36 378-413 63-99 (427)
449 PRK00856 pyrB aspartate carbam 80.4 65 0.0014 32.1 15.0 134 255-412 48-190 (305)
450 TIGR02317 prpB methylisocitrat 80.4 63 0.0014 31.9 15.7 118 69-196 65-200 (285)
451 cd08261 Zn_ADH7 Alcohol dehydr 80.4 2.5 5.5E-05 41.7 4.9 39 380-418 159-197 (337)
452 PRK07565 dihydroorotate dehydr 80.4 18 0.00039 36.3 11.1 84 26-118 104-197 (334)
453 PRK07251 pyridine nucleotide-d 80.3 2.6 5.5E-05 43.8 5.1 34 381-414 157-190 (438)
454 cd07939 DRE_TIM_NifV Streptomy 80.1 58 0.0013 31.3 15.8 195 34-246 18-236 (259)
455 cd00423 Pterin_binding Pterin 79.9 14 0.0003 35.7 9.6 112 82-206 9-133 (258)
456 cd02931 ER_like_FMN Enoate red 79.8 14 0.00029 38.0 10.1 25 96-120 250-274 (382)
457 cd05276 p53_inducible_oxidored 79.7 2.9 6.3E-05 40.1 4.9 38 380-417 139-177 (323)
458 cd08269 Zn_ADH9 Alcohol dehydr 79.7 3.2 7E-05 40.1 5.3 38 380-417 129-167 (312)
459 PLN02702 L-idonate 5-dehydroge 79.6 3.3 7.1E-05 41.6 5.5 38 380-417 181-219 (364)
460 PRK02102 ornithine carbamoyltr 79.4 25 0.00055 35.4 11.6 132 255-412 49-188 (331)
461 PLN02507 glutathione reductase 79.3 2.4 5.2E-05 45.1 4.5 30 383-412 27-56 (499)
462 PRK12770 putative glutamate sy 79.3 2.9 6.2E-05 42.1 4.9 35 379-413 170-205 (352)
463 PLN02328 lysine-specific histo 79.2 2.4 5.1E-05 47.7 4.6 34 380-413 237-270 (808)
464 COG0499 SAM1 S-adenosylhomocys 79.1 3.1 6.8E-05 42.1 4.9 42 377-418 205-246 (420)
465 PLN02858 fructose-bisphosphate 79.1 2.3 5E-05 50.7 4.7 39 381-419 324-362 (1378)
466 TIGR01292 TRX_reduct thioredox 79.1 3.2 6.8E-05 40.0 5.0 36 379-414 139-174 (300)
467 PF02629 CoA_binding: CoA bind 78.9 2.6 5.5E-05 34.2 3.6 37 381-417 3-41 (96)
468 PRK04965 NADH:flavorubredoxin 78.9 3.1 6.8E-05 42.1 5.1 35 380-414 140-174 (377)
469 PRK08255 salicylyl-CoA 5-hydro 78.9 9.3 0.0002 42.9 9.2 87 30-119 541-659 (765)
470 cd05279 Zn_ADH1 Liver alcohol 78.7 3.2 6.9E-05 41.8 5.0 39 380-418 183-222 (365)
471 PRK05976 dihydrolipoamide dehy 78.7 3 6.4E-05 43.8 5.0 34 381-414 180-213 (472)
472 PRK03562 glutathione-regulated 78.7 2.4 5.2E-05 46.4 4.4 39 381-419 400-438 (621)
473 PLN02178 cinnamyl-alcohol dehy 78.7 3.7 7.9E-05 41.8 5.5 35 380-414 178-212 (375)
474 PRK07565 dihydroorotate dehydr 78.7 22 0.00049 35.6 11.1 40 74-121 98-137 (334)
475 PLN00016 RNA-binding protein; 78.6 2.6 5.6E-05 42.8 4.3 37 380-416 51-92 (378)
476 cd02932 OYE_YqiM_FMN Old yello 78.4 21 0.00046 35.7 10.9 76 40-118 158-261 (336)
477 cd08266 Zn_ADH_like1 Alcohol d 78.4 3.5 7.5E-05 40.1 5.1 39 380-418 166-205 (342)
478 PF05853 DUF849: Prokaryotic p 78.4 70 0.0015 31.2 14.2 132 32-191 22-161 (272)
479 PLN02612 phytoene desaturase 78.4 3 6.5E-05 45.1 5.0 36 378-413 90-125 (567)
480 cd08213 RuBisCO_large_III Ribu 78.3 91 0.002 32.5 16.3 201 68-287 121-364 (412)
481 PRK00779 ornithine carbamoyltr 78.3 70 0.0015 31.8 14.3 132 255-412 46-184 (304)
482 cd08268 MDR2 Medium chain dehy 78.2 3.4 7.3E-05 39.8 4.9 39 380-418 144-183 (328)
483 cd05286 QOR2 Quinone oxidoredu 77.9 3.5 7.6E-05 39.4 4.9 39 380-418 136-175 (320)
484 cd08285 NADP_ADH NADP(H)-depen 77.8 4.3 9.2E-05 40.4 5.6 38 380-417 166-204 (351)
485 COG1062 AdhC Zn-dependent alco 77.8 4.2 9.1E-05 41.0 5.3 39 380-418 185-224 (366)
486 TIGR03385 CoA_CoA_reduc CoA-di 77.8 3.5 7.5E-05 42.6 5.1 35 380-414 136-170 (427)
487 KOG1203 Predicted dehydrogenas 77.7 3.7 8.1E-05 42.5 5.1 42 379-420 77-119 (411)
488 TIGR01408 Ube1 ubiquitin-activ 77.7 2.3 5E-05 49.1 4.0 36 378-413 416-457 (1008)
489 KOG0023 Alcohol dehydrogenase, 77.7 2.8 6.1E-05 41.9 4.0 37 380-416 181-217 (360)
490 cd05285 sorbitol_DH Sorbitol d 77.6 3.3 7.2E-05 41.0 4.7 39 380-418 162-201 (343)
491 PRK03659 glutathione-regulated 77.5 2.7 5.9E-05 45.8 4.4 38 382-419 401-438 (601)
492 cd05280 MDR_yhdh_yhfp Yhdh and 77.3 3.9 8.4E-05 39.8 5.1 38 381-418 147-185 (325)
493 PRK06370 mercuric reductase; V 77.3 3.5 7.7E-05 43.1 5.1 34 381-414 171-204 (463)
494 PLN02852 ferredoxin-NADP+ redu 77.3 3.6 7.9E-05 43.7 5.1 34 380-413 165-219 (491)
495 TIGR03693 ocin_ThiF_like putat 77.2 2.8 6.1E-05 45.4 4.2 31 380-410 128-159 (637)
496 PF10566 Glyco_hydro_97: Glyco 77.2 8.8 0.00019 37.6 7.4 94 94-187 28-140 (273)
497 PRK00694 4-hydroxy-3-methylbut 77.2 8.9 0.00019 41.2 7.8 61 136-198 28-93 (606)
498 TIGR00284 dihydropteroate synt 77.2 90 0.0019 33.4 15.4 142 11-176 142-287 (499)
499 TIGR01350 lipoamide_DH dihydro 77.2 3.4 7.4E-05 43.0 4.9 34 381-414 170-203 (461)
500 PF13434 K_oxygenase: L-lysine 77.1 2.8 6E-05 42.4 4.0 37 379-415 188-226 (341)
No 1
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=100.00 E-value=3.6e-101 Score=809.76 Aligned_cols=411 Identities=82% Similarity=1.248 Sum_probs=374.7
Q ss_pred cccccccccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCC
Q 014691 9 ASGSKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIW 88 (420)
Q Consensus 9 ~~~~~~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~ 88 (420)
||.---|||+|++++|+|||||++++.+|++.+++++...++|+||||+|+|.+..+.+++..+++..++|+|||+|+++
T Consensus 8 ~~~~~~~~~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~ 87 (529)
T PLN02520 8 ASDDLQGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKW 87 (529)
T ss_pred hhhhhhcccccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHH
Confidence 45555689999999999999999999999999999887789999999999998766556677777777899999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691 89 EGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD 168 (420)
Q Consensus 89 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD 168 (420)
|||.|++++++|+++|+.+++.++||||||+...++..+.+...+..+++||+|||||++||+.+|+.+++++|.++|||
T Consensus 88 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaD 167 (529)
T PLN02520 88 EGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGAD 167 (529)
T ss_pred HCCCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999888766666556668999999999999999999999999999999999
Q ss_pred EEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccc
Q 014691 169 IVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ 248 (420)
Q Consensus 169 ivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~ 248 (420)
|+|||+||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++.+.++||||+++++++++|++.+
T Consensus 168 i~Kia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~ 247 (529)
T PLN02520 168 IVKIATTALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQ 247 (529)
T ss_pred EEEEecCCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhc
Confidence 99999999999999999998877789999999999999999999999999999999865579999999999999999999
Q ss_pred cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHH
Q 014691 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV 328 (420)
Q Consensus 249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~ 328 (420)
++++|++|||+|+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||+++++++|++|+.
T Consensus 248 ~~~~t~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~ 327 (529)
T PLN02520 248 IGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPI 327 (529)
T ss_pred ccCCceEEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE
Q 014691 329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV 408 (420)
Q Consensus 329 A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~ 408 (420)
|+.+||||||++++++|+|+||||||.||+.+|++.+...+. .+..+.++++|+++|+|+||+|||++++|++.|++|+
T Consensus 328 A~~iGAVNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~-~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~ 406 (529)
T PLN02520 328 AKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGS-SPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV 406 (529)
T ss_pred HHHhCCceEEEEeCCCCEEEEEcccHHHHHHHHHhhhccccc-ccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE
Confidence 999999999998622799999999999999999864311000 0001245788999999999999999999999999999
Q ss_pred EEeCChhhhhcC
Q 014691 409 IANRTYENLQRL 420 (420)
Q Consensus 409 v~nR~~~ka~~L 420 (420)
++||+.+++++|
T Consensus 407 i~nR~~e~a~~l 418 (529)
T PLN02520 407 IANRTYERAKEL 418 (529)
T ss_pred EEcCCHHHHHHH
Confidence 999999988753
No 2
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=100.00 E-value=9.6e-90 Score=715.49 Aligned_cols=368 Identities=29% Similarity=0.447 Sum_probs=335.4
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
||||||++++.+|++++++.+. .++|+||||+|+|.+..+. .++.+++..+.|++ |+|+++ ++++++|+++|
T Consensus 1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~-~~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l 72 (477)
T PRK09310 1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDL-ELKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM 72 (477)
T ss_pred CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHH-HHHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence 6999999999999999999876 6799999999999876544 37777664466766 999987 45889999999
Q ss_pred HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHH
Q 014691 105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVAR 184 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ 184 (420)
+.++++++||||||++.+++.++++... ++++|||+|||||+. +++.+++++|.++||||+|||+||++.+|+++
T Consensus 73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~~----~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~ 147 (477)
T PRK09310 73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSEH----EDIIQLYNEMLASAADYYKIAVSSSSSTDLLN 147 (477)
T ss_pred HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCCc----chHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence 9999999999999999988888777544 459999999999942 68999999999999999999999999999999
Q ss_pred HHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccccCCCceEEeeeccCcc
Q 014691 185 VFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVG 264 (420)
Q Consensus 185 ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~~~~~~v~G~pv~ 264 (420)
+++++...+.|+|+|+||+.|++||+++++|||++||+++..++++||||++++++. .|++.+++++|++|||+|+||+
T Consensus 148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~ 226 (477)
T PRK09310 148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD 226 (477)
T ss_pred HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence 999988888899999999999999999999999999999876545799999999998 5788899888999999999999
Q ss_pred ccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEec
Q 014691 265 HSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQ 342 (420)
Q Consensus 265 hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~ 342 (420)
||+||.|||++|+++|+|+.|.+++++ ++.++++.++.++|.|+|||||||++|++|+|++|+.|+.+||||||+++
T Consensus 227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~- 305 (477)
T PRK09310 227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR- 305 (477)
T ss_pred cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence 999999999999999999999999884 79999999999999999999999999999999999999999999999987
Q ss_pred cCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 343 SDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 343 ~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
+|+|+||||||.||+.+|++.. .++++++++|+|+||+|++++++|.+.|++|+++||+.+++++
T Consensus 306 -~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~ 370 (477)
T PRK09310 306 -NGKIEGYNTDGEGLFSLLKQKN-----------IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEA 370 (477)
T ss_pred -CCEEEEEecCHHHHHHHHHhcC-----------CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 8999999999999999997531 4567899999999999999999999999999999999988764
No 3
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=4.4e-55 Score=420.93 Aligned_cols=235 Identities=29% Similarity=0.472 Sum_probs=210.4
Q ss_pred ccccccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhH----HHHHHhhC-CCcEEEEecc
Q 014691 12 SKLVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN----IKTLIKES-PVPTLFTYRP 86 (420)
Q Consensus 12 ~~~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~----l~~l~~~~-~~PiI~T~R~ 86 (420)
+|+.+-.++.+.|+|||||.+++.+|++++++++...++|+||||+|+|.+.++.+. +..+++.. ++|+|||+|+
T Consensus 4 ~~~~~~~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~ 83 (253)
T PRK02412 4 VTVKNLVIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRT 83 (253)
T ss_pred eEEeceEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 356778888999999999999999999999998888899999999999987543222 33344433 6899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 014691 87 IWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA 164 (420)
Q Consensus 87 ~~eGG~~~~~~~~~~~ll~~~~~~~-~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~ 164 (420)
++|||.++.++++|+++|+.+++.+ |||||||+..+.+.++++.. .++++++||+|||||++||+.+++.+++++|++
T Consensus 84 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~ 163 (253)
T PRK02412 84 AKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMES 163 (253)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999988887777763 356899999999999999999999999999999
Q ss_pred cCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHh
Q 014691 165 SGADIVKFATTALDITDVARVFQITVH-----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD 239 (420)
Q Consensus 165 ~gaDivKia~~~~s~~D~~~ll~~~~~-----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~ 239 (420)
+||||+|+|+||++.+|++++++++.+ .+.|+|+|+||+.|++||+++++|||++||++++++ +||||+++++
T Consensus 164 ~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~--sAPGQ~~~~e 241 (253)
T PRK02412 164 LGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKA--SAPGQISVED 241 (253)
T ss_pred hCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCC--CCCCCCCHHH
Confidence 999999999999999999999998643 468999999999999999999999999999999975 9999999999
Q ss_pred HHHHHhccc
Q 014691 240 LLDLYNFRQ 248 (420)
Q Consensus 240 l~~~~~~~~ 248 (420)
|+++|+..+
T Consensus 242 l~~i~~~l~ 250 (253)
T PRK02412 242 LRRILEILH 250 (253)
T ss_pred HHHHHHHhc
Confidence 999998643
No 4
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-53 Score=394.81 Aligned_cols=222 Identities=32% Similarity=0.536 Sum_probs=198.0
Q ss_pred CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC-CchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHH
Q 014691 23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF-NPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENER 100 (420)
Q Consensus 23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~ 100 (420)
.|+||+|+.+.+.+++.++++..+..++|++|||+|+|... +..+....+++. ...|+|||+|+.+|||.|++++++|
T Consensus 1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~ 80 (231)
T COG0710 1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY 80 (231)
T ss_pred CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence 48999999999999999999999999999999999999921 112334445543 3669999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691 101 VDVLRLAMELG-ADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI 179 (420)
Q Consensus 101 ~~ll~~~~~~~-~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~ 179 (420)
+++++.+++.+ ++|||||+..+++.++++...+ +..++|+|||||++||+++++.+++.+|.+.||||+|+|+||++.
T Consensus 81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~-~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~ 159 (231)
T COG0710 81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKFA-KKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK 159 (231)
T ss_pred HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhcc-ccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence 99999999986 9999999999987777776432 233399999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc---CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc
Q 014691 180 TDVARVFQITVH---SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR 247 (420)
Q Consensus 180 ~D~~~ll~~~~~---~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~ 247 (420)
+|++++++++.. .+.|+|+||||..|++||+++++|||++||++++++ +||||++++++++++...
T Consensus 160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~--sAPGQi~v~~l~~~~~~l 228 (231)
T COG0710 160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKP--SAPGQISVDELRKILTLL 228 (231)
T ss_pred HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCC--CCCCCCCHHHHHHHHHHh
Confidence 999999999775 689999999999999999999999999999999985 999999999999998754
No 5
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=100.00 E-value=5.2e-53 Score=401.08 Aligned_cols=217 Identities=38% Similarity=0.613 Sum_probs=192.1
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh-----hCCCcEEEEeccCCCCCCCCCCHHH
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK-----ESPVPTLFTYRPIWEGGQYDGDENE 99 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~-----~~~~PiI~T~R~~~eGG~~~~~~~~ 99 (420)
+||||+++++.+++..+++++ ..++|+||||+|+|.+..+.+.+..+.+ ..++|+|||+|+++|||.++.++++
T Consensus 1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~ 79 (228)
T TIGR01093 1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE 79 (228)
T ss_pred CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence 589999999999999999987 7899999999999976543322222221 1478999999999999999999999
Q ss_pred HHHHHHHH-HHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 014691 100 RVDVLRLA-MELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL 177 (420)
Q Consensus 100 ~~~ll~~~-~~~~~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~ 177 (420)
|+++|+.+ .+.++||||||+..+++..+++.. .+++++|||+|||||++||+++++.+++++|.++||||+|+|+||+
T Consensus 80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~ 159 (228)
T TIGR01093 80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN 159 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence 99999998 567799999999998888777763 4578999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHH
Q 014691 178 DITDVARVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244 (420)
Q Consensus 178 s~~D~~~ll~~~~~~----~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~ 244 (420)
+.+|++++++++.+. ++|+|+|+||+.|++||+++++|||++||++++++ +||||+++++|+++|
T Consensus 160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~--sApGQ~~~~~l~~~~ 228 (228)
T TIGR01093 160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKA--SAPGQISVDDLRELL 228 (228)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCC--CCCCCcCHHHHHhhC
Confidence 999999999987543 57999999999999999999999999999999764 999999999999874
No 6
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=100.00 E-value=8.9e-53 Score=398.47 Aligned_cols=217 Identities=39% Similarity=0.645 Sum_probs=183.8
Q ss_pred EEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691 27 CVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV 103 (420)
Q Consensus 27 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l 103 (420)
||||+++|.+|++++++++...++|+||||+|+|.+.+. .+.+..+++..++|+|||+|+++|||.+..++++|+++
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l 80 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL 80 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence 999999999999999999877699999999999995322 34677777777999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHH
Q 014691 104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVA 183 (420)
Q Consensus 104 l~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~ 183 (420)
|+.+++.|+||||||++..++........+.++++||+|||||++||+++++.+++++|.++||||+|+|+++++.+|++
T Consensus 81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~ 160 (224)
T PF01487_consen 81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL 160 (224)
T ss_dssp HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence 99999999999999999555443333333568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 184 RVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 184 ~ll~~~~~~----~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
++++++.+. +.|+|+|+||+.|++||+++++|||++||++.+++ +||||+++++|+++|+
T Consensus 161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~--sApGQl~~~~l~~~~~ 224 (224)
T PF01487_consen 161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEA--SAPGQLTLEELREILH 224 (224)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS---SSTT-EBHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCC--CCCCCCcHHHHHHHhC
Confidence 999987654 58999999999999999999999999999977654 9999999999999985
No 7
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=100.00 E-value=8.3e-51 Score=385.30 Aligned_cols=215 Identities=37% Similarity=0.605 Sum_probs=191.2
Q ss_pred EEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCCC---chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 014691 25 LICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFN---PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER 100 (420)
Q Consensus 25 ~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~ 100 (420)
+|||||.++ +.+|...+++... ++|+||||+|+|.+.. ..++++.+++..+.|+|||+|+++|||.+..++++|
T Consensus 1 ~i~~~i~~~~~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~ 78 (225)
T cd00502 1 KICVPLTGPDLLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY 78 (225)
T ss_pred CEEEEecCCCCHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence 589999999 9999988776543 8999999999998642 234566676666799999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691 101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI 179 (420)
Q Consensus 101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~ 179 (420)
+++++.++++++||||||+.. + ..+++. ..+++++|||+|||+|++||+.+++.+.+++|.++||||+|+|+||++.
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~-~-~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~ 156 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS-A-LLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSI 156 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc-h-HHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 999999999999999999987 3 333343 3356899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC----CCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 180 TDVARVFQITVHS----QVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 180 ~D~~~ll~~~~~~----~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
+|++++++++... +.|+|+|+||+.|++||++++.|||++||++++++ +||||+++++++++|+
T Consensus 157 ~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~--sApGQ~~~~~l~~~~~ 224 (225)
T cd00502 157 EDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEP--SAPGQLSVEELKQALS 224 (225)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCC--CCCCCcCHHHHHHHHh
Confidence 9999999987654 46999999999999999999999999999999874 9999999999999885
No 8
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=9.9e-51 Score=386.23 Aligned_cols=220 Identities=24% Similarity=0.405 Sum_probs=184.2
Q ss_pred CcEEEEeecCCC-HHHH-HHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHH----h-hCCCcEEEEeccCCCCCCCCC
Q 014691 23 PTLICVPIMGES-VDKM-VVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI----K-ESPVPTLFTYRPIWEGGQYDG 95 (420)
Q Consensus 23 ~~~icv~l~~~~-~~e~-~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~----~-~~~~PiI~T~R~~~eGG~~~~ 95 (420)
.+.|++++.... +++. .++++.. ..+||+||||+|+|.+.+. +++..++ + ..+.|+|||+|+++|||.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~-~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~ 80 (238)
T PRK13575 3 HVEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTV-DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQF 80 (238)
T ss_pred ceeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCH-HHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCC
Confidence 456777777664 5665 4444443 5679999999999987443 2344333 2 246899999999999999999
Q ss_pred CHHHHHHHHHHHHHhC-CcEEEEEccc--ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEE
Q 014691 96 DENERVDVLRLAMELG-ADYIDVELQV--AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVK 171 (420)
Q Consensus 96 ~~~~~~~ll~~~~~~~-~d~iDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivK 171 (420)
++++|+++++.++..+ +||||||+.. +.+..+++. ..+..+++||+|||||++||+.+++.+++++|.++||||+|
T Consensus 81 ~~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~K 160 (238)
T PRK13575 81 TNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVK 160 (238)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 9999999998888776 8999999986 334444544 34567899999999999999999999999999999999999
Q ss_pred EEeecCCHHHHHHHHHHhcc----CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 172 FATTALDITDVARVFQITVH----SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 172 ia~~~~s~~D~~~ll~~~~~----~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
||+||++.+|+++|++++.+ .+.|+|+|+||+.|++||+++++|||++||++++++ +||||+++++|++++++
T Consensus 161 iAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~--sAPGQi~v~~l~~i~~~ 237 (238)
T PRK13575 161 LAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEP--QAPGQIHVTDLKAQVTL 237 (238)
T ss_pred EEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCC--CCCCCCCHHHHHHHHHh
Confidence 99999999999999998654 367999999999999999999999999999999875 99999999999999864
No 9
>PRK13576 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=1.7e-49 Score=371.33 Aligned_cols=204 Identities=23% Similarity=0.296 Sum_probs=174.4
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV 101 (420)
Q Consensus 22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 101 (420)
+.|+||+||++++.++++++++. .++|+||||+|+|.+.... +..+++....|+|||+|+++|||.+++++++|+
T Consensus 1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~ 75 (216)
T PRK13576 1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI 75 (216)
T ss_pred CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence 46899999999999999998654 5899999999999865433 333444456799999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH-H
Q 014691 102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI-T 180 (420)
Q Consensus 102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~-~ 180 (420)
++|+.+++.+. ++|||+....+.. ..+.++|+|||||++||+.++|.+++++|.+ ||||+|||+||++. .
T Consensus 76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~ 146 (216)
T PRK13576 76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK 146 (216)
T ss_pred HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence 99999999975 7799997543321 1246799999999999999999999999987 99999999999985 7
Q ss_pred HHH-HHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc
Q 014691 181 DVA-RVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR 247 (420)
Q Consensus 181 D~~-~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~ 247 (420)
|++ ++++ .. .+|+|+||+.| +||+++++|||++||++++++ |||||+++++|+++|++.
T Consensus 147 d~l~~Ll~---~~--~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~--sAPGQi~v~~l~~i~~~l 206 (216)
T PRK13576 147 EVLLPLLE---YE--NVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEP--TAQGQLHYKKVKQILNYL 206 (216)
T ss_pred hHHHHHhc---cc--CccEEEcCCcc-HHHHHHHHhCCeeEEEecCCC--CCCCCccHHHHHHHHHHH
Confidence 765 5554 22 45889999999 999999999999999999975 999999999999999864
No 10
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=1.4e-46 Score=354.92 Aligned_cols=215 Identities=20% Similarity=0.289 Sum_probs=180.5
Q ss_pred cccccc--cccCCCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCch--hHHHHHHhhCCCcEEEEe
Q 014691 9 ASGSKL--VSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPR--ENIKTLIKESPVPTLFTY 84 (420)
Q Consensus 9 ~~~~~~--~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~--~~l~~l~~~~~~PiI~T~ 84 (420)
-||-|+ .+-.++..+|+|||||++++.+|++.+++.+...+||+||||+|+|.+.+.. ..+...++..++|+|||+
T Consensus 4 ~~~~~~~v~~~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~~~p~I~T~ 83 (229)
T PRK01261 4 YSGDKISIGKFVIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYIFTY 83 (229)
T ss_pred ccCCeEEEeCeEeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhcCCCEEEEE
Confidence 356554 6888999999999999999999999999988778999999999999874432 222233344589999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHH
Q 014691 85 RPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQA 164 (420)
Q Consensus 85 R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~ 164 (420)
|+. ++ .++++.+++.++||||||+....++ ..+..++++|+||| ||+.+++.+++++|.+
T Consensus 84 R~~--------~~---~~~l~~a~~~~~d~vDIEl~~~~~~-----~~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~ 143 (229)
T PRK01261 84 RGV--------DA---RKYYETAIDKMPPAVDLDINLIGKL-----EFRPRNTMLMVSYH----TNNSDNMPAILDIMNE 143 (229)
T ss_pred cCC--------CH---HHHHHHHHhhCCCEEEEEcccchhh-----hhhcCCCeEEEEeC----CCCHHHHHHHHHHHHH
Confidence 942 22 4788888887799999999873332 12457999999999 7888999999999999
Q ss_pred cCCCEEEEEeecCCHHHHHHHHHH----hccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhH
Q 014691 165 SGADIVKFATTALDITDVARVFQI----TVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240 (420)
Q Consensus 165 ~gaDivKia~~~~s~~D~~~ll~~----~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l 240 (420)
+||||+|+|+||++.+|+++++.. ....+.|+|+|+||+ ++||+++++|||++||++++++ |||||+++++|
T Consensus 144 ~gaDI~KiAvmp~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~--sAPGQi~v~~l 219 (229)
T PRK01261 144 KNPDYVKVACNYNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNE--TAPGQPKRDYY 219 (229)
T ss_pred hCCCEEEEEeCCCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCC--CCCCCCCHHHH
Confidence 999999999999999998877643 334578999999999 9999999999999999999975 99999999999
Q ss_pred HHHHhcc
Q 014691 241 LDLYNFR 247 (420)
Q Consensus 241 ~~~~~~~ 247 (420)
+++|+..
T Consensus 220 ~~~~~~~ 226 (229)
T PRK01261 220 ESAFIKY 226 (229)
T ss_pred HHHHHHh
Confidence 9999853
No 11
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-47 Score=370.39 Aligned_cols=162 Identities=40% Similarity=0.668 Sum_probs=150.7
Q ss_pred cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD 326 (420)
Q Consensus 249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~ 326 (420)
++..++.|+|||+||+||+||.|||++|+++|+++.|.+++++ +|+.+++.++.+++.|+|||||||+++++++|++|
T Consensus 2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~ 81 (283)
T COG0169 2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS 81 (283)
T ss_pred CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence 4567899999999999999999999999999999999999995 99999999999999999999999999999999999
Q ss_pred HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691 327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA- 405 (420)
Q Consensus 327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~- 405 (420)
+.|+.+||||||+++. +|+|+||||||.||.++|++... +.+.++++++|+||||||||++++|++.|+
T Consensus 82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~---------~~~~~~~~vlilGAGGAarAv~~aL~~~g~~ 151 (283)
T COG0169 82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL---------PVDVTGKRVLILGAGGAARAVAFALAEAGAK 151 (283)
T ss_pred HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC---------CcccCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 9999999999999982 49999999999999999987421 145578999999999999999999999998
Q ss_pred eEEEEeCChhhhhcC
Q 014691 406 RVVIANRTYENLQRL 420 (420)
Q Consensus 406 ~i~v~nR~~~ka~~L 420 (420)
+|+|+|||.+||++|
T Consensus 152 ~i~V~NRt~~ra~~L 166 (283)
T COG0169 152 RITVVNRTRERAEEL 166 (283)
T ss_pred EEEEEeCCHHHHHHH
Confidence 999999999999875
No 12
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=100.00 E-value=9e-47 Score=368.32 Aligned_cols=157 Identities=29% Similarity=0.435 Sum_probs=145.9
Q ss_pred CceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc-------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhc
Q 014691 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDE 324 (420)
Q Consensus 252 ~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~ 324 (420)
++++|||+|+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++.++|.|+|||||||++|++++|+
T Consensus 3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~ 82 (283)
T PRK14027 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE 82 (283)
T ss_pred CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence 578999999999999999999999999999999999985 4799999999989999999999999999999999
Q ss_pred ccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCC
Q 014691 325 VDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKG 404 (420)
Q Consensus 325 l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g 404 (420)
+|+.|+.+||||||++.. +|+|+||||||.||+++|++.. .+.++|+++|+||||+|||++|+|.++|
T Consensus 83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~~-----------~~~~~k~vlilGaGGaarAi~~aL~~~g 150 (283)
T PRK14027 83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-----------PNAKLDSVVQVGAGGVGNAVAYALVTHG 150 (283)
T ss_pred CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhcC-----------cCcCCCeEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999999852 8999999999999999997532 2456899999999999999999999999
Q ss_pred C-eEEEEeCChhhhhcC
Q 014691 405 A-RVVIANRTYENLQRL 420 (420)
Q Consensus 405 ~-~i~v~nR~~~ka~~L 420 (420)
+ +|+|+|||.+||++|
T Consensus 151 ~~~i~i~nR~~~ka~~L 167 (283)
T PRK14027 151 VQKLQVADLDTSRAQAL 167 (283)
T ss_pred CCEEEEEcCCHHHHHHH
Confidence 9 999999999999864
No 13
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=100.00 E-value=4.9e-46 Score=364.16 Aligned_cols=159 Identities=30% Similarity=0.495 Sum_probs=146.5
Q ss_pred cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD 326 (420)
Q Consensus 249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~ 326 (420)
++..|++|||+|+||+||+||.|||++|+++|+|++|.+++++ +|+++++.++..+|.|+|||||||++|++|+|++|
T Consensus 3 ~~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~ 82 (288)
T PRK12749 3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELT 82 (288)
T ss_pred cCCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCC
Confidence 3456889999999999999999999999999999999999984 79999999988899999999999999999999999
Q ss_pred HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691 327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA- 405 (420)
Q Consensus 327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~- 405 (420)
+.|+.+||||||+++ +|+|+||||||.||+++|++.. .++++|+++||||||+|||++++|..+|+
T Consensus 83 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~~-----------~~~~~k~vlvlGaGGaarAi~~~l~~~g~~ 149 (288)
T PRK12749 83 PAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKESG-----------FDIKGKTMVLLGAGGASTAIGAQGAIEGLK 149 (288)
T ss_pred HHHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhcC-----------CCcCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence 999999999999876 8999999999999999997531 45678999999999999999999999999
Q ss_pred eEEEEeCCh---hhhhcC
Q 014691 406 RVVIANRTY---ENLQRL 420 (420)
Q Consensus 406 ~i~v~nR~~---~ka~~L 420 (420)
+|+|+|||. +||++|
T Consensus 150 ~i~i~nRt~~~~~ka~~l 167 (288)
T PRK12749 150 EIKLFNRRDEFFDKALAF 167 (288)
T ss_pred EEEEEeCCccHHHHHHHH
Confidence 999999994 577653
No 14
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-45 Score=360.34 Aligned_cols=158 Identities=29% Similarity=0.434 Sum_probs=146.7
Q ss_pred CCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc-------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhh
Q 014691 250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCC 322 (420)
Q Consensus 250 ~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~ 322 (420)
+..+++|+|+|+||+||+||.|||++|+++|+|+.|.++++ ++|+++++.++..+|.|+|||||||+++++++
T Consensus 2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~ 81 (284)
T PRK12549 2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL 81 (284)
T ss_pred CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence 34578999999999999999999999999999999999986 37899999998899999999999999999999
Q ss_pred hcccHHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHh
Q 014691 323 DEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA 402 (420)
Q Consensus 323 d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~ 402 (420)
|++|+.|+.+||||||+++ +|+|+||||||.||+++|++.. .++++|+|+|||+||+||+++++|..
T Consensus 82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlIlGaGGaaraia~aL~~ 148 (284)
T PRK12549 82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-----------PDASLERVVQLGAGGAGAAVAHALLT 148 (284)
T ss_pred ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-----------cCccCCEEEEECCcHHHHHHHHHHHH
Confidence 9999999999999999886 8999999999999999997542 24568999999999999999999999
Q ss_pred CCC-eEEEEeCChhhhhcC
Q 014691 403 KGA-RVVIANRTYENLQRL 420 (420)
Q Consensus 403 ~g~-~i~v~nR~~~ka~~L 420 (420)
.|+ +|+|+||+.+|++.|
T Consensus 149 ~G~~~I~I~nR~~~ka~~l 167 (284)
T PRK12549 149 LGVERLTIFDVDPARAAAL 167 (284)
T ss_pred cCCCEEEEECCCHHHHHHH
Confidence 999 999999999998864
No 15
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=100.00 E-value=6.8e-45 Score=355.73 Aligned_cols=157 Identities=34% Similarity=0.500 Sum_probs=142.4
Q ss_pred ceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc---cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHH
Q 014691 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD---DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVA 329 (420)
Q Consensus 253 ~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~---~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A 329 (420)
++.|+|||+||+||+||.|||++|+++|+|+.|.++++. ++.++++.++ .+|.|+|||||||+++++++|++|+.|
T Consensus 5 ~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~A 83 (282)
T TIGR01809 5 PKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDRA 83 (282)
T ss_pred CeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHHH
Confidence 679999999999999999999999999999999999873 6888888774 499999999999999999999999999
Q ss_pred HHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEE
Q 014691 330 KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVV 408 (420)
Q Consensus 330 ~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~ 408 (420)
+.+||||||++.. +|+|+||||||.||+.+|++... ..++++|+++||||||+||+++++|.++|+ +|+
T Consensus 84 ~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~~---------~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~ 153 (282)
T TIGR01809 84 SLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANIGK---------FEPLAGFRGLVIGAGGTSRAAVYALASLGVTDIT 153 (282)
T ss_pred HHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhhCC---------ccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEE
Confidence 9999999999852 89999999999999999976310 014678999999999999999999999999 899
Q ss_pred EEeCChhhhhcC
Q 014691 409 IANRTYENLQRL 420 (420)
Q Consensus 409 v~nR~~~ka~~L 420 (420)
|+|||.+|+++|
T Consensus 154 I~nRt~~ka~~L 165 (282)
T TIGR01809 154 VINRNPDKLSRL 165 (282)
T ss_pred EEeCCHHHHHHH
Confidence 999999999864
No 16
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-44 Score=354.39 Aligned_cols=158 Identities=34% Similarity=0.549 Sum_probs=146.3
Q ss_pred cCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD 326 (420)
Q Consensus 249 ~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~ 326 (420)
++..|++|||||+||+||+||.|||++|+++|+|+.|.+++++ ++.++++.++..+|.|+|||||||++|++++|++|
T Consensus 5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~ 84 (289)
T PRK12548 5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS 84 (289)
T ss_pred cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence 5567889999999999999999999999999999999999984 79999999988899999999999999999999999
Q ss_pred HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691 327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA- 405 (420)
Q Consensus 327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~- 405 (420)
+.|+.+||||||+++ +|+|+||||||.||+.+|++.. ..+++|+++|+||||+|||++++|+..|+
T Consensus 85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~~-----------~~~~~k~vlI~GAGGagrAia~~La~~G~~ 151 (289)
T PRK12548 85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREHG-----------VDVKGKKLTVIGAGGAATAIQVQCALDGAK 151 (289)
T ss_pred HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhcC-----------CCcCCCEEEEECCcHHHHHHHHHHHHCCCC
Confidence 999999999999887 8999999999999999997532 34678999999999999999999999999
Q ss_pred eEEEEeCCh---hhhhc
Q 014691 406 RVVIANRTY---ENLQR 419 (420)
Q Consensus 406 ~i~v~nR~~---~ka~~ 419 (420)
+|+|+||+. +++++
T Consensus 152 ~V~I~~R~~~~~~~a~~ 168 (289)
T PRK12548 152 EITIFNIKDDFYERAEQ 168 (289)
T ss_pred EEEEEeCCchHHHHHHH
Confidence 699999996 66654
No 17
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=4.1e-44 Score=349.79 Aligned_cols=159 Identities=38% Similarity=0.656 Sum_probs=148.0
Q ss_pred CCCceEEeeeccCccccccHHHHHHHHHHcCCCceeecccc--ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccH
Q 014691 250 GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT 327 (420)
Q Consensus 250 ~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~ 327 (420)
+.+|+.|+|+|+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus 2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~ 81 (278)
T PRK00258 2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE 81 (278)
T ss_pred CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence 45689999999999999999999999999999999999999 5899999999888999999999999999999999999
Q ss_pred HHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-e
Q 014691 328 VAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R 406 (420)
Q Consensus 328 ~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~ 406 (420)
.|+.+||||||+++ +|+|+||||||.||+.+|++... .++.+|+++|+|+||+||+++++|...|+ +
T Consensus 82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~~----------~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~ 149 (278)
T PRK00258 82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERLG----------VDLKGKRILILGAGGAARAVILPLLDLGVAE 149 (278)
T ss_pred HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhccC----------CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCE
Confidence 99999999999976 89999999999999999975321 35778999999999999999999999996 9
Q ss_pred EEEEeCChhhhhcC
Q 014691 407 VVIANRTYENLQRL 420 (420)
Q Consensus 407 i~v~nR~~~ka~~L 420 (420)
|+|+||+.+++++|
T Consensus 150 V~v~~R~~~~a~~l 163 (278)
T PRK00258 150 ITIVNRTVERAEEL 163 (278)
T ss_pred EEEEeCCHHHHHHH
Confidence 99999999998753
No 18
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=5e-44 Score=346.99 Aligned_cols=157 Identities=24% Similarity=0.396 Sum_probs=144.3
Q ss_pred ccCCCceE-EeeeccCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhccc
Q 014691 248 QMGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVD 326 (420)
Q Consensus 248 ~~~~~~~~-~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~ 326 (420)
++.++|++ |||+|+| ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++|+|++|
T Consensus 4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~ 81 (272)
T PRK12550 4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD 81 (272)
T ss_pred cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence 45677884 9999999 77889999999999999999999998899999999998999999999999999999999999
Q ss_pred HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-
Q 014691 327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA- 405 (420)
Q Consensus 327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~- 405 (420)
+.|+.+||||||+++ +|+|+||||||.||+++|++.. .. .+++++|+||||+|||++++|.++|+
T Consensus 82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~~-----------~~-~~~~vlilGaGGaarAi~~aL~~~g~~ 147 (272)
T PRK12550 82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASYQ-----------VP-PDLVVALRGSGGMAKAVAAALRDAGFT 147 (272)
T ss_pred HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhcC-----------CC-CCCeEEEECCcHHHHHHHHHHHHCCCC
Confidence 999999999999887 8999999999999999997531 22 35789999999999999999999999
Q ss_pred eEEEEeCChhhhhcC
Q 014691 406 RVVIANRTYENLQRL 420 (420)
Q Consensus 406 ~i~v~nR~~~ka~~L 420 (420)
+|+|+|||.+|+++|
T Consensus 148 ~i~i~nR~~~~a~~l 162 (272)
T PRK12550 148 DGTIVARNEKTGKAL 162 (272)
T ss_pred EEEEEeCCHHHHHHH
Confidence 899999999999864
No 19
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=100.00 E-value=2.4e-42 Score=335.92 Aligned_cols=153 Identities=39% Similarity=0.646 Sum_probs=142.6
Q ss_pred eEEeeeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHH
Q 014691 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS 331 (420)
Q Consensus 254 ~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~ 331 (420)
++|||+|+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++.++|.|+|||||||+++++++|++++.|+.
T Consensus 1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~ 80 (270)
T TIGR00507 1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL 80 (270)
T ss_pred CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence 47999999999999999999999999999999999984 7999999999899999999999999999999999999999
Q ss_pred hcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEe
Q 014691 332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN 411 (420)
Q Consensus 332 iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~n 411 (420)
+||||||+++ +|+|+||||||.||+++|++.. ...++|+++|+|+||+|++++++|.+.|++|+++|
T Consensus 81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~~-----------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~ 147 (270)
T TIGR00507 81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERLI-----------PLRPNQRVLIIGAGGAARAVALPLLKADCNVIIAN 147 (270)
T ss_pred hCCceEEEee--CCEEEEEcCCHHHHHHHHHhcC-----------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Confidence 9999999976 8999999999999999997521 23467899999999999999999999999999999
Q ss_pred CChhhhhc
Q 014691 412 RTYENLQR 419 (420)
Q Consensus 412 R~~~ka~~ 419 (420)
|+.+++++
T Consensus 148 R~~~~~~~ 155 (270)
T TIGR00507 148 RTVSKAEE 155 (270)
T ss_pred CCHHHHHH
Confidence 99988765
No 20
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.96 E-value=3.7e-32 Score=271.20 Aligned_cols=390 Identities=16% Similarity=0.071 Sum_probs=306.8
Q ss_pred CCCCCCcEEEEeecCCCHHHHHHHHH----hhhhcCCCEEEEEecCCCCCC-chhHHHHHHhhCCCcEEEEeccCCCCCC
Q 014691 18 GMRKNPTLICVPIMGESVDKMVVDMG----KANASGADLVEIRLDGLKNFN-PRENIKTLIKESPVPTLFTYRPIWEGGQ 92 (420)
Q Consensus 18 ~~~~~~~~icv~l~~~~~~e~~~~~~----~~~~~~~D~vElRlD~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~ 92 (420)
...++..++| .++..+++..+. ++.+.+++++|.|.|-...++ +.+.....+....+|.|++.|..||+|.
T Consensus 89 taeKas~iV~----~pdir~i~~~i~~pgSKs~snralllaa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we~~~ 164 (595)
T KOG0692|consen 89 TAEKASEIVL----QPDIREISGLIKLPGSKSLSNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEENN 164 (595)
T ss_pred hhhhcchhhc----ChhHHHhhceeeCCCCchhhhhHHHHHHHhccceeccccccccchhhhhhhHHHhccccceecCCC
Confidence 4455555555 444555444222 122344555555555444333 1111222233467899999999999998
Q ss_pred ---CCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCE
Q 014691 93 ---YDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI 169 (420)
Q Consensus 93 ---~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDi 169 (420)
.++...++-..++..++++.+|+|.|++..-++...+-+...+..+||.+.|+.+.+| +-..+..+++.||||
T Consensus 165 ~~vveG~gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rP----i~~LV~~l~q~GadI 240 (595)
T KOG0692|consen 165 RAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERP----IGDLVVGLKQLGADI 240 (595)
T ss_pred EEEEEcCCCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCC----chHHHHHHHhcCCce
Confidence 6777666656677788899999999999877776666555555569999999999999 556678888899999
Q ss_pred EEEEeecCCHHHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHH--hcc
Q 014691 170 VKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY--NFR 247 (420)
Q Consensus 170 vKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~--~~~ 247 (420)
.|++.+...+-|+. ....++..++|+++.-||+.+..+|+++|.++.++||+.++..+-|+|+|.....|.+.| ++.
T Consensus 241 ~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgvn~~ 319 (595)
T KOG0692|consen 241 ECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVE 319 (595)
T ss_pred EEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCcCeE
Confidence 99999999999997 566677778999999999999999999999999999999997778999999999999999 788
Q ss_pred ccCCCceEEeeeccCccccccHHHHHHHHHHcCCCceeeccccccHHHHHHHhcCCCCCEEE-EcccchHHHHhhhhccc
Q 014691 248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS-CTIPHKEAAVKCCDEVD 326 (420)
Q Consensus 248 ~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~~-VT~P~K~~i~~~~d~l~ 326 (420)
...+.++.|++.|.|+.|+.+|.+||.+|.+.-..+.|...-++-.-.++..-...++.||+ |+.|||.++...+++.+
T Consensus 320 ~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svt 399 (595)
T KOG0692|consen 320 HSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVT 399 (595)
T ss_pred ecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHhhhccccceeeeeccccc
Confidence 99999999999999999999999999999999888888876655444455555567899999 99999999999999999
Q ss_pred HHHHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCC--cccccCCCEEEEEccchHHHHHHHHHHhCC
Q 014691 327 TVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGG--VSSALAGKLFVVIGAGGAGKALAYGAKAKG 404 (420)
Q Consensus 327 ~~A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~--~~~~~~~k~vlviGaGGaara~~~aL~~~g 404 (420)
..+.-+||+|++-++.-|+...++|||..|-+.++...+...+++..- .......+...|||.|+..++..+...+.+
T Consensus 400 v~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~s~gdptti~~~as~rvket~r~ia~~~el~klg~~~~E~~ 479 (595)
T KOG0692|consen 400 VTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGS 479 (595)
T ss_pred ccCCCCCcccceehhhhcccccccchhHhHhHHHHhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999987447789999999999999998776543332100 001122345688999999999999998888
Q ss_pred CeEEEEeCChhhh
Q 014691 405 ARVVIANRTYENL 417 (420)
Q Consensus 405 ~~i~v~nR~~~ka 417 (420)
..++|++|+ +|+
T Consensus 480 dg~~v~~~~-~k~ 491 (595)
T KOG0692|consen 480 DGYCVITPP-EKK 491 (595)
T ss_pred ceEEEeCCc-hHh
Confidence 889999999 443
No 21
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=99.95 E-value=2.4e-28 Score=196.04 Aligned_cols=81 Identities=41% Similarity=0.806 Sum_probs=75.1
Q ss_pred eeccCccccccHHHHHHHHHHcCCCceeeccccc--cHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHHhcce
Q 014691 258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAV 335 (420)
Q Consensus 258 v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAv 335 (420)
|+|+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++..+|.|+|||||||+++++++|++|+.|+.+|||
T Consensus 1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv 80 (83)
T PF08501_consen 1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV 80 (83)
T ss_dssp EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence 6999999999999999999999999999999995 99999999998999999999999999999999999999999999
Q ss_pred eEE
Q 014691 336 NCI 338 (420)
Q Consensus 336 NTi 338 (420)
|||
T Consensus 81 Ntv 83 (83)
T PF08501_consen 81 NTV 83 (83)
T ss_dssp SEE
T ss_pred ccC
Confidence 997
No 22
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.79 E-value=3.6e-19 Score=173.82 Aligned_cols=142 Identities=23% Similarity=0.365 Sum_probs=121.4
Q ss_pred EeeeccCccccccHHHHHHHHHHcCCCceeecc--cc--ccHHHHHHHhcCC-CCCEEEEcccchHHHHh--hhhcccHH
Q 014691 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHL--LV--DDIAKFFQTYSSN-DFAGFSCTIPHKEAAVK--CCDEVDTV 328 (420)
Q Consensus 256 ~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~--~~--~~l~~~~~~~~~~-~~~G~~VT~P~K~~i~~--~~d~l~~~ 328 (420)
.-++|+.=+.-.--.+|+.+|+++|++..|.++ ++ +++.++++.++.. ++.|++||+|||+.+.+ ++|++ +.
T Consensus 38 ~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~ 116 (283)
T PRK14192 38 TILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SL 116 (283)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CH
Confidence 345564433333347999999999999999999 55 3788888888655 79999999999999999 99999 88
Q ss_pred HHHhcceeEEEEeccCCe------EEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHH
Q 014691 329 AKSIGAVNCIIRRQSDGK------LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAK 401 (420)
Q Consensus 329 A~~iGAvNTi~~~~~~g~------l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~ 401 (420)
++.++++||+ + +|+ ++|+||| .||++.|+.. +.+++||+|+|+|+|| +||++++.|.
T Consensus 117 aKDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-----------~i~l~Gk~vvViG~gg~vGkpia~~L~ 180 (283)
T PRK14192 117 AKDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-----------NIELAGKHAVVVGRSAILGKPMAMMLL 180 (283)
T ss_pred HHhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-----------CCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence 9999999999 3 466 8999999 9999998764 2578999999999999 9999999999
Q ss_pred hCCCeEEEEeCCh
Q 014691 402 AKGARVVIANRTY 414 (420)
Q Consensus 402 ~~g~~i~v~nR~~ 414 (420)
+.|+.|++++|..
T Consensus 181 ~~gatVtv~~~~t 193 (283)
T PRK14192 181 NANATVTICHSRT 193 (283)
T ss_pred hCCCEEEEEeCCc
Confidence 9999999999843
No 23
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.81 E-value=4.9e-09 Score=91.66 Aligned_cols=44 Identities=48% Similarity=0.639 Sum_probs=41.0
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL 420 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~L 420 (420)
.++++++++||||||+||+++++|...|+ +|+|+|||.+|+++|
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l 52 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEAL 52 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence 36789999999999999999999999999 799999999999864
No 24
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.61 E-value=3.6e-08 Score=98.91 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=63.3
Q ss_pred HHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHh-CCC-eE
Q 014691 330 KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKA-KGA-RV 407 (420)
Q Consensus 330 ~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~-~g~-~i 407 (420)
..+|++||++.. +++|.|+|||+.|++.+.. +. ....++++|||+|++|++.+.++.. .++ +|
T Consensus 96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-----------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V 160 (330)
T PRK08291 96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-----------REDASRAAVIGAGEQARLQLEALTLVRPIREV 160 (330)
T ss_pred CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-----------CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEE
Confidence 467999999765 7899999999999999864 21 1235789999999999999999985 567 89
Q ss_pred EEEeCChhhhhcC
Q 014691 408 VIANRTYENLQRL 420 (420)
Q Consensus 408 ~v~nR~~~ka~~L 420 (420)
+|+||+.++++++
T Consensus 161 ~v~~R~~~~a~~l 173 (330)
T PRK08291 161 RVWARDAAKAEAY 173 (330)
T ss_pred EEEcCCHHHHHHH
Confidence 9999999998753
No 25
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.49 E-value=1.2e-07 Score=94.92 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=63.2
Q ss_pred HHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHH-hCCC-eE
Q 014691 330 KSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAK-AKGA-RV 407 (420)
Q Consensus 330 ~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~-~~g~-~i 407 (420)
...|++|+++.. ++.+.|+|||+.|++.+.. +. ....++++|||+|++|++.+.+|. ..++ +|
T Consensus 93 ~~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-----------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v 157 (326)
T TIGR02992 93 SRTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-----------REDSSVVAIFGAGMQARLQLEALTLVRDIRSA 157 (326)
T ss_pred CCCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-----------CCCCcEEEEECCCHHHHHHHHHHHHhCCccEE
Confidence 356999999765 7889999999999998863 21 113578999999999999999997 4777 89
Q ss_pred EEEeCChhhhhcC
Q 014691 408 VIANRTYENLQRL 420 (420)
Q Consensus 408 ~v~nR~~~ka~~L 420 (420)
+|+||+.+|++++
T Consensus 158 ~V~~R~~~~a~~~ 170 (326)
T TIGR02992 158 RIWARDSAKAEAL 170 (326)
T ss_pred EEECCCHHHHHHH
Confidence 9999999998853
No 26
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.38 E-value=7.8e-07 Score=78.70 Aligned_cols=57 Identities=42% Similarity=0.664 Sum_probs=49.6
Q ss_pred cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhc
Q 014691 352 TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQR 419 (420)
Q Consensus 352 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~ 419 (420)
|||+||.+++++.. .++++++++|+|+|++|++++.+|.+.|. +|++++|+.+++++
T Consensus 1 td~~g~~~a~~~~~-----------~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~ 58 (155)
T cd01065 1 TDGLGFVRALEEAG-----------IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKA 58 (155)
T ss_pred CCHHHHHHHHHhhC-----------CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH
Confidence 89999999998641 34678999999999999999999999975 89999999887754
No 27
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.16 E-value=4.7e-07 Score=93.88 Aligned_cols=98 Identities=28% Similarity=0.338 Sum_probs=74.8
Q ss_pred chHHHHhhhhcccHHHHHhcceeEEEEec-----cCCeEEEEecCHHHHH-----HHHHhhhccCCCCCCCcccccCCCE
Q 014691 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----SDGKLFGYNTDYVGAI-----SAIEDGLRGRLNVSGGVSSALAGKL 383 (420)
Q Consensus 314 ~K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----~~g~l~G~NTD~~G~~-----~~l~~~~~~~~~~~~~~~~~~~~k~ 383 (420)
=+.+|+++++.....|+..|++|+++..- ..++.++++|+..+.- .+++..... ..++.+++
T Consensus 113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~~--------~~~~~~~~ 184 (423)
T PRK00045 113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQI--------FGDLSGKK 184 (423)
T ss_pred CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHHh--------hCCccCCE
Confidence 46789999999999999999999987320 1456778888854431 223222110 02467899
Q ss_pred EEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhc
Q 014691 384 FVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQR 419 (420)
Q Consensus 384 vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~ 419 (420)
++|+|+|++|+.++..|...|+ +|+++||+.++++.
T Consensus 185 vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~ 221 (423)
T PRK00045 185 VLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE 221 (423)
T ss_pred EEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 9999999999999999999998 89999999998764
No 28
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.13 E-value=1.5e-06 Score=89.61 Aligned_cols=95 Identities=22% Similarity=0.268 Sum_probs=67.5
Q ss_pred hHHHHhhhhcccHHHHHhcceeEEEEec-----------cCCeEEEEecCHHHHH--HHHHhhhccCCCCCCCcccccCC
Q 014691 315 KEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGAI--SAIEDGLRGRLNVSGGVSSALAG 381 (420)
Q Consensus 315 K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~~--~~l~~~~~~~~~~~~~~~~~~~~ 381 (420)
..+|+.++.+.-..|+..|+++.++.+- .+.+-+|.+.=..+.+ ...++.+ .++.+
T Consensus 113 E~QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~~~~-----------~~l~~ 181 (414)
T PRK13940 113 EPQILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQL-----------DNISS 181 (414)
T ss_pred cHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHh-----------cCccC
Confidence 4578888888888888888887766430 1122233333333322 2222222 35789
Q ss_pred CEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL 420 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~L 420 (420)
++++|||+||+|++++.+|...|+ +|+|+|||.+||+.|
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~L 221 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKI 221 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 999999999999999999999998 999999999998764
No 29
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.03 E-value=1.3e-05 Score=82.07 Aligned_cols=145 Identities=19% Similarity=0.295 Sum_probs=94.9
Q ss_pred eEEeeeccCccccccHHHHHHHHHHcCCC------ceeeccccccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccH
Q 014691 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFN------GVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDT 327 (420)
Q Consensus 254 ~~~~v~G~pv~hS~SP~ihn~~f~~~gl~------~~y~~~~~~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~ 327 (420)
..|++. |.-+ .+-+-.++..+++ +.|...+-+-++.+++.. .|+..+.+. -.+|+.++...-.
T Consensus 54 EiY~~~-----~~~~-~~~~~l~~~~~~~~~~l~~~~~v~~~~~Av~HLfrVA--sGLDSmVlG---E~QILGQVK~Ay~ 122 (414)
T COG0373 54 EIYAVV-----HTGS-ELIRFLAELHGLSIEDLGKYLYVLRGEEAVRHLFRVA--SGLDSLVLG---ETQILGQVKDAYA 122 (414)
T ss_pred EEEEEe-----cccc-chhHHHHHhcCCChhhhccCeEEEcCHHHHHHHHHHh--ccchhhhcC---cHHHHHHHHHHHH
Confidence 455555 4444 4445555566654 234444434455555443 233433333 3578999999888
Q ss_pred HHHHhcceeEEEEec-----------cCCeEEEEecCHHHHHHH--HHhhhccCCCCCCCcccccCCCEEEEEccchHHH
Q 014691 328 VAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGAISA--IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGK 394 (420)
Q Consensus 328 ~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~~~~--l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaar 394 (420)
.|+.-|.+.+++.+- ++.+-+|.|-=.++.... .++.+ .+++++++||||||.|+.
T Consensus 123 ~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~~~VSi~saAv~lA~~~~-----------~~L~~~~vlvIGAGem~~ 191 (414)
T COG0373 123 KAQENGTLGKVLNRLFQKAISVGKRVRSETGIGKGAVSISSAAVELAKRIF-----------GSLKDKKVLVIGAGEMGE 191 (414)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhhcccCCCCCccchHHHHHHHHHHHh-----------cccccCeEEEEcccHHHH
Confidence 999988888776440 122235555555554332 12222 348899999999999999
Q ss_pred HHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691 395 ALAYGAKAKGA-RVVIANRTYENLQRL 420 (420)
Q Consensus 395 a~~~aL~~~g~-~i~v~nR~~~ka~~L 420 (420)
.++.+|...|+ +|+|+|||.+||++|
T Consensus 192 lva~~L~~~g~~~i~IaNRT~erA~~L 218 (414)
T COG0373 192 LVAKHLAEKGVKKITIANRTLERAEEL 218 (414)
T ss_pred HHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 99999999998 999999999999864
No 30
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.91 E-value=2e-05 Score=75.02 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC---eEEEEeCC----hhhh
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRT----YENL 417 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~---~i~v~nR~----~~ka 417 (420)
..||+.+++.. +.++++++++|+||||+|+++++.|...|+ +|+++||+ .+|+
T Consensus 9 lAG~~~al~~~-----------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 9 LAGLLNALKLV-----------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGRE 68 (226)
T ss_pred HHHHHHHHHHh-----------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccc
Confidence 35788887653 146789999999999999999999999997 59999999 5654
No 31
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.51 E-value=0.00017 Score=66.54 Aligned_cols=64 Identities=36% Similarity=0.453 Sum_probs=49.6
Q ss_pred EEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 349 GYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 349 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
|-||-....+..+++.+... +.++++++++|+|+ |++|++++..|.+.|++|++++|+.+++++
T Consensus 3 G~~~ta~aav~~~~~~l~~~-------~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~ 67 (194)
T cd01078 3 GSNTTAAAAVAAAGKALELM-------GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQK 67 (194)
T ss_pred CcHHHHHHHHHHHHHHHHHh-------CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 44555555566666555321 24678999999996 999999999999999999999999988764
No 32
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.36 E-value=0.0012 Score=65.11 Aligned_cols=41 Identities=32% Similarity=0.481 Sum_probs=38.0
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
..+.|++++|+|+|++|++++..|..+|++|+++||+.++.
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~ 187 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADL 187 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 46789999999999999999999999999999999998764
No 33
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.25 E-value=0.00024 Score=71.18 Aligned_cols=91 Identities=10% Similarity=0.027 Sum_probs=62.2
Q ss_pred hHHHHhhhhcccHHHHHhcceeEEEEec-----------cCCeEEEEecCHHHHHH-HHHhhhccCCCCCCCcccccCCC
Q 014691 315 KEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGAIS-AIEDGLRGRLNVSGGVSSALAGK 382 (420)
Q Consensus 315 K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~~~-~l~~~~~~~~~~~~~~~~~~~~k 382 (420)
-.+|+.++.+.-..|+..|++..++.+- .+.+-+|.+-=..+.+. .+.+.+ .++++|
T Consensus 107 E~QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~~~~vSv~s~av~~~~~~-----------~~l~~k 175 (338)
T PRK00676 107 ETEIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIESVVQQELRRR-----------QKSKKA 175 (338)
T ss_pred cHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHh-----------CCccCC
Confidence 4567888888888888887776554320 12222344433344331 111111 357899
Q ss_pred EEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhh
Q 014691 383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYEN 416 (420)
Q Consensus 383 ~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~k 416 (420)
++||||+|.+|+.++.+|.+.|+ +|+|+|||.++
T Consensus 176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~ 210 (338)
T PRK00676 176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT 210 (338)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 99999999999999999999998 89999999643
No 34
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.20 E-value=0.0012 Score=52.84 Aligned_cols=53 Identities=32% Similarity=0.523 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeC
Q 014691 353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (420)
Q Consensus 353 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR 412 (420)
.+.|.+..|++.... .+.++++++++|+|+|++|+.++..|.+.|. +|+++||
T Consensus 2 t~~~~~~~l~~~~~~-------~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 2 TAAGAVALLKAAGKV-------TNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred hhHHHHHHHHHHHHH-------hCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 356777777765431 1245789999999999999999999999965 9999998
No 35
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.14 E-value=0.0012 Score=59.89 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=35.8
Q ss_pred cccCCCEEEEEccchH-HHHHHHHHHhCCCeEEEEeCChhh
Q 014691 377 SALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 377 ~~~~~k~vlviGaGGa-ara~~~aL~~~g~~i~v~nR~~~k 416 (420)
.+++||+++|+|+|++ |+.++..|...|++|+++||+.+.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~ 80 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN 80 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh
Confidence 4689999999999996 888999999999999999998654
No 36
>PLN00203 glutamyl-tRNA reductase
Probab=97.09 E-value=0.00059 Score=72.47 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=66.0
Q ss_pred hHHHHhhhhcccHHHHHhcceeEEEEec-----------cCCeEEEEecCHHHH--HHHHHhhhccCCCCCCCcccccCC
Q 014691 315 KEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGA--ISAIEDGLRGRLNVSGGVSSALAG 381 (420)
Q Consensus 315 K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~--~~~l~~~~~~~~~~~~~~~~~~~~ 381 (420)
-.+|+.++.+.-..|+..|+++.++.+- .+.+-+|.+-=..+. +...++.++ ..++.+
T Consensus 196 E~QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~---------~~~l~~ 266 (519)
T PLN00203 196 EGQILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLP---------ESSHAS 266 (519)
T ss_pred ChHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcC---------CCCCCC
Confidence 3568888888888888888877665430 111223333332332 221222221 024778
Q ss_pred CEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhcC
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQRL 420 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~L 420 (420)
++++|||+|++|++++..|...|+ +|+|+||+.++++.|
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 999999999999999999999998 899999999998753
No 37
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.08 E-value=0.0013 Score=61.34 Aligned_cols=61 Identities=26% Similarity=0.356 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
++|.+.+++..+.... .+.+++||+++|+|.|.+|+.++..|.+.|++|++++++.++.++
T Consensus 6 g~Gv~~~~~~~~~~~~-----~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~ 66 (200)
T cd01075 6 AYGVFLGMKAAAEHLL-----GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVAR 66 (200)
T ss_pred HHHHHHHHHHHHHHhc-----CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 5677666666543210 125789999999999999999999999999999999999887653
No 38
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.03 E-value=0.004 Score=61.21 Aligned_cols=125 Identities=21% Similarity=0.322 Sum_probs=78.3
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g 345 (420)
....+++|++.....++- +++.+.++.+ .++...|+-|-.|.-..+ ...++.+++ .+.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p-~KDVDGl~~~n----~g 128 (286)
T PRK14175 54 KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINP-EKDVDGFHPIN----IG 128 (286)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCCccc----hH
Confidence 446789999987766654 2566677777 467899999999964322 111222221 11111111110 01
Q ss_pred eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCC
Q 014691 346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~ 413 (420)
+++ |. -.--.|++..|++. +.+++||+++|+|.|+ +|+.++..|...|+.|+++++.
T Consensus 129 ~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 129 KLYIDEQTFVPCTPLGIMEILKHA-----------DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred hHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 221 10 11134555555442 2578999999999999 9999999999999999998874
No 39
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.79 E-value=0.0078 Score=59.50 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=78.9
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
....+++|++.....++- +++.+.++.+ .++...|+-|-+|.-. ++|+. +.+.+++.-.=- |
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~----~i~~~----~i~~~I~p~KDV--DGl~ 124 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPA----HIDEA----RVLQAINPLKDV--DGFH 124 (301)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCCHH----HHHhccCchhcc--CccC
Confidence 447888999987666643 3577777777 5678999999999742 23221 112222222100 1
Q ss_pred ----CeE-EEEe----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 345 ----GKL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 345 ----g~l-~G~N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR~~ 414 (420)
|++ .|.+ .--.|++.-|+.. +.+++||+++|||.| -+|+.++.-|.+.|+.|+++||+.
T Consensus 125 ~~N~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 125 SENVGGLSQGRDVLTPCTPSGCLRLLEDT-----------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred hhhhhHHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 111 1111 1145666666543 267899999999997 599999999999999999998753
No 40
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.78 E-value=0.0016 Score=64.82 Aligned_cols=97 Identities=27% Similarity=0.315 Sum_probs=63.7
Q ss_pred chHHHHhhhhcccHHHHHhcceeEEEEec-----------cCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCC
Q 014691 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQ-----------SDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGK 382 (420)
Q Consensus 314 ~K~~i~~~~d~l~~~A~~iGAvNTi~~~~-----------~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k 382 (420)
-..+|+.++.+.-..|+..|.++.++.+- ++..-++.+.=..+.. +++..... ...+.++
T Consensus 109 GE~qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~~sv~~~-Av~~a~~~--------~~~l~~~ 179 (311)
T cd05213 109 GETQILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSA-AVELAEKI--------FGNLKGK 179 (311)
T ss_pred CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHHHHHH--------hCCccCC
Confidence 35678888888888888888877665430 0111122221122322 22221110 0236789
Q ss_pred EEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhc
Q 014691 383 LFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQR 419 (420)
Q Consensus 383 ~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~ 419 (420)
+++|+|+|.+|+.++..|...|+ +|+++||+.+++++
T Consensus 180 ~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 180 KVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred EEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 99999999999999999998887 89999999988754
No 41
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.68 E-value=0.0021 Score=66.63 Aligned_cols=42 Identities=43% Similarity=0.651 Sum_probs=38.3
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhhc
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQR 419 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~~ 419 (420)
.+.+++++|+|+|.+|+.++..|...|+ +|+++||+.+++++
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 4678999999999999999999999997 99999999988764
No 42
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.64 E-value=0.0032 Score=62.36 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=36.5
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
..+.+++++|||+|++|++++..|..+|++|++++|+.++
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~ 187 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH 187 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 3567899999999999999999999999999999999765
No 43
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.40 E-value=0.069 Score=50.10 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=77.0
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
.+...+...+.+++...++.+.+.|+.++|+|.+.-. ..+.++.+.+..+.++++=.= .. -..+ -+
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---~~~~i~~l~~~~~~~~~iGaG-----TV---~~~~---~~ 76 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPD---PFDSIAALVKALGDRALIGAG-----TV---LSPE---QV 76 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc---HHHHHHHHHHHcCCCcEEeEE-----ec---CCHH---HH
Confidence 3555688999999999999999999999999976432 234677776666545443211 11 1122 33
Q ss_pred HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
+.+++.|++++=. =..+.+..+.. +..+..++.+.| || +| +.++.+.|+|++|+
T Consensus 77 ~~a~~aGA~fivs-p~~~~~v~~~~---~~~~~~~~~G~~----t~--~E----~~~A~~~Gad~vk~ 130 (206)
T PRK09140 77 DRLADAGGRLIVT-PNTDPEVIRRA---VALGMVVMPGVA----TP--TE----AFAALRAGAQALKL 130 (206)
T ss_pred HHHHHcCCCEEEC-CCCCHHHHHHH---HHCCCcEEcccC----CH--HH----HHHHHHcCCCEEEE
Confidence 5677889988733 12233333322 245778888877 43 23 45566789999997
No 44
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.31 E-value=0.0048 Score=61.58 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=35.6
Q ss_pred CCCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhcC
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQRL 420 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~L 420 (420)
..++++|||+|++|++.+.++.. .+. +|+|+||++++++++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~ 166 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL 166 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 46899999999999999988765 566 899999999998753
No 45
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.29 E-value=0.015 Score=52.38 Aligned_cols=42 Identities=38% Similarity=0.455 Sum_probs=33.6
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
..+.||+++|+|=|..||.+|.+|..+|++|+|+.+++-++-
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~al 60 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRAL 60 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHH
Confidence 567899999999999999999999999999999999987763
No 46
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.23 E-value=0.0053 Score=50.95 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=32.8
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+++|+++||+|+|.+|..-+..|.+.|++|+|++.+.
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 46789999999999999999999999999999999984
No 47
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.028 Score=55.55 Aligned_cols=117 Identities=23% Similarity=0.253 Sum_probs=76.4
Q ss_pred HHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeE
Q 014691 273 NEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL 347 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~--~--~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l 347 (420)
....+++|++..-..++ + +++.+.++.+ .++++.|+-|-.|+-. ++|+. +.+.+++--. | .
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~----~~~~~----~i~~~I~p~K----D--V 119 (296)
T PRK14188 54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPK----HLDSE----AVIQAIDPEK----D--V 119 (296)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC----CCCHH----HHHhccCccc----c--c
Confidence 34688999997544443 3 3677777777 4678999999999742 22221 1112222111 1 1
Q ss_pred EEEecC----------------HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEc-cchHHHHHHHHHHhCCCeEEEE
Q 014691 348 FGYNTD----------------YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIG-AGGAGKALAYGAKAKGARVVIA 410 (420)
Q Consensus 348 ~G~NTD----------------~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviG-aGGaara~~~aL~~~g~~i~v~ 410 (420)
-|.+.. -.|++.-|+.. +.+++||+|+||| +|-+|+.++.-|.+.|+.|+++
T Consensus 120 DGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~-----------~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~ 188 (296)
T PRK14188 120 DGLHVVNAGRLATGETALVPCTPLGCMMLLRRV-----------HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIA 188 (296)
T ss_pred ccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEE
Confidence 112111 45555555442 2578999999999 7779999999999999999999
Q ss_pred -eCCh
Q 014691 411 -NRTY 414 (420)
Q Consensus 411 -nR~~ 414 (420)
+||.
T Consensus 189 ~~rT~ 193 (296)
T PRK14188 189 HSRTR 193 (296)
T ss_pred CCCCC
Confidence 4875
No 48
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.19 E-value=0.0066 Score=61.98 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=36.5
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
+.+++++|+|+|++|+.++..|..+|++|++++|+.++++.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~ 205 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQ 205 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 45678999999999999999999999999999999877553
No 49
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=96.14 E-value=0.8 Score=49.62 Aligned_cols=210 Identities=14% Similarity=0.128 Sum_probs=137.7
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (420)
+.++.+.-++...+.|.+.||.- .|. +...++.+.++.+++.. +.++..-+|..+--|..+..++-..+.++
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~ 98 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK 98 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence 44555555555566799999994 552 22334566677776533 57777778877666765556666677888
Q ss_pred HHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEEEEc-ccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CC
Q 014691 106 LAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSS-HNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LD 178 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~~~~--~~~~~l~~~~~~~~kiI~S~-H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s 178 (420)
++.+.|+|.+-|=...++ .....+...+..+..+.++. +.+ +| +.+.+.+..+++.+.|||.+-|+=|. -+
T Consensus 99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~ 176 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT--SPVHTLETYLDLAEELLEMGVDSICIKDMAGILT 176 (582)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence 999999998887654432 22222223344556666542 223 55 66789999999999999999888776 56
Q ss_pred HHHHHHHHHHhcc-CCCCEEE--EecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 179 ITDVARVFQITVH-SQVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 179 ~~D~~~ll~~~~~-~~~p~I~--~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
+.++.++.+.++. .+.|+-. .+.--++..+=+.+-.-|....=+++.. -.-..||++++++...++.
T Consensus 177 P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~G-lG~~tGn~~le~vv~~L~~ 246 (582)
T TIGR01108 177 PKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISS-MSGGTSHPPTETMVAALRG 246 (582)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEecccc-ccccccChhHHHHHHHHHh
Confidence 8899888887654 3556443 4555556666666666666555455543 2346899999888776653
No 50
>PRK08328 hypothetical protein; Provisional
Probab=96.13 E-value=0.0061 Score=58.12 Aligned_cols=37 Identities=30% Similarity=0.536 Sum_probs=33.4
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~ 414 (420)
.+++++|+|+|+||.|..++..|+..|+ ++++++.+.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3567899999999999999999999999 999998764
No 51
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.09 E-value=0.012 Score=58.37 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=36.1
Q ss_pred cCCCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhc
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQR 419 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~ 419 (420)
...++++|||+|+.|++.+.++.. .+. +|+|+||+.+++++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~ 165 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAA 165 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHH
Confidence 346899999999999999999975 677 89999999999875
No 52
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.04 E-value=0.11 Score=49.30 Aligned_cols=154 Identities=17% Similarity=0.105 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcE
Q 014691 35 VDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADY 114 (420)
Q Consensus 35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~ 114 (420)
.++..+-++++.+.|+|++=+..-++.. ..... ..+.|++..++...-=|.-..+.+......+.+++.|++.
T Consensus 20 ~~d~~~~~~~~~~~g~~av~v~~~~~~~------~~~~~-~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~~ 92 (235)
T cd00958 20 LEDPEETVKLAAEGGADAVALTKGIARA------YGREY-AGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADA 92 (235)
T ss_pred ccCHHHHHHHHHhcCCCEEEeChHHHHh------ccccc-CCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCCE
Confidence 3344444455556688888765332221 01111 1245777776632111110223345556688899999999
Q ss_pred EEEEcccccc-------hhHHHhh-cCCCCcEEEEEcccCCC----CCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHH
Q 014691 115 IDVELQVARE-------FNDSIRG-KKPEKCKVIVSSHNYQY----TPSVEDLSNLVARIQASGADIVKFATTALDITDV 182 (420)
Q Consensus 115 iDiEl~~~~~-------~~~~l~~-~~~~~~kiI~S~H~f~~----tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~ 182 (420)
||+.++.... ...++.. .++.+.++|+--|.... .-+.+++....+.+.+.|||++|+-. +. |.
T Consensus 93 v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~-~~---~~ 168 (235)
T cd00958 93 VGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY-TG---DA 168 (235)
T ss_pred EEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC-CC---CH
Confidence 9998865321 2233332 24578899986553110 01234555556677789999999942 22 33
Q ss_pred HHHHHHhccCCCCEEEE
Q 014691 183 ARVFQITVHSQVPIIGL 199 (420)
Q Consensus 183 ~~ll~~~~~~~~p~I~~ 199 (420)
..+-++.+..+.|++++
T Consensus 169 ~~~~~i~~~~~~pvv~~ 185 (235)
T cd00958 169 ESFKEVVEGCPVPVVIA 185 (235)
T ss_pred HHHHHHHhcCCCCEEEe
Confidence 33444444456776554
No 53
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.95 E-value=0.2 Score=46.18 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=79.1
Q ss_pred cEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691 24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVD 102 (420)
Q Consensus 24 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ 102 (420)
+.||+.|-..+.++...-++.+... +|++|+-+.+..... .+.++.+++. .+.|++.+.-.. +.+ . .
T Consensus 1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~-~~~-------~--~ 68 (202)
T cd04726 1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTA-DAG-------A--L 68 (202)
T ss_pred CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEec-ccc-------H--H
Confidence 4689999999999999988876665 999999666543222 2457777665 478888764432 111 1 2
Q ss_pred HHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 103 VLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
.++.+.+.|++++=+-.....+...++. ..++.+.++++..+.. .|| .+.. + +...|+|++++
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~-~t~--~e~~---~-~~~~~~d~v~~ 132 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV-EDP--EKRA---K-LLKLGVDIVIL 132 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC-CCH--HHHH---H-HHHCCCCEEEE
Confidence 3467788899988775443322222222 1234567777654422 122 2332 2 55568888887
No 54
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.94 E-value=0.017 Score=59.86 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=37.9
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
..+.|++|+|+|.|.+|+.++..|..+|++|+++++++.++.
T Consensus 208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~ 249 (425)
T PRK05476 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICAL 249 (425)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhH
Confidence 346899999999999999999999999999999999987753
No 55
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.88 E-value=1.6 Score=42.63 Aligned_cols=212 Identities=14% Similarity=0.074 Sum_probs=127.3
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCC-------CCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGL-------KNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l-------~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (420)
+.++.+.-++...+.|+|.||.=.-.- ...++.+.++.+.+. .+.++..-+|..+.-|..+.+.+-..+.++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 344444445555677999999974320 122344556655543 356787778866555544444455667888
Q ss_pred HHHHhCCcEEEEEccccc-c-hhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCHH
Q 014691 106 LAMELGADYIDVELQVAR-E-FNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTA--LDIT 180 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~~~~-~-~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~~ 180 (420)
.+.+.|+++|-|-....+ + ..+.+...+..+.++...... +....+.+.+.+..+++.+.|+|.+-++=+. -+++
T Consensus 99 ~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~ 178 (275)
T cd07937 99 KAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPY 178 (275)
T ss_pred HHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence 899999999888654432 1 222222334556677665442 2223356789999999999999999998555 4688
Q ss_pred HHHHHHHHhccC-CCCEEEEecC--CcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 181 DVARVFQITVHS-QVPIIGLVMG--ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 181 D~~~ll~~~~~~-~~p~I~~~MG--~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
++.++++.+.+. +.|+-..+=- -++...=+..-..|..+.=+++..- .-..|+.+++++...++.
T Consensus 179 ~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~Gl-G~~aGN~~~E~l~~~L~~ 246 (275)
T cd07937 179 AAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL-SGGTSQPSTESMVAALRG 246 (275)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc-cCCcCChhHHHHHHHHHc
Confidence 998888876542 4555443321 2222333333334544443444431 234899999888766653
No 56
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.84 E-value=0.013 Score=47.35 Aligned_cols=37 Identities=41% Similarity=0.557 Sum_probs=32.8
Q ss_pred EEEEEccchHHHHHHHHHHhCC---CeEEEE-eCChhhhhc
Q 014691 383 LFVVIGAGGAGKALAYGAKAKG---ARVVIA-NRTYENLQR 419 (420)
Q Consensus 383 ~vlviGaGGaara~~~aL~~~g---~~i~v~-nR~~~ka~~ 419 (420)
++.+||+|.+|.+++..|.+.| .+|+++ +|+++++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~ 41 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAE 41 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHH
Confidence 4778999999999999999999 589966 999998865
No 57
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.81 E-value=0.011 Score=55.06 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=34.0
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
..++.++|+|+|+||+|..++..|+..|+ ++++++++
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34667899999999999999999999999 89999998
No 58
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.73 E-value=0.013 Score=54.70 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=33.2
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+++++|+|+|+||.|..++..|+..|+ ++++++++
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567899999999999999999999999 99999987
No 59
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.73 E-value=0.21 Score=46.05 Aligned_cols=119 Identities=23% Similarity=0.291 Sum_probs=69.5
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
.++..+.+.+.+++...++.+.+.|++++|+|...-. ..+.++.+.+..+- +.+. +|.. .+ .++ +
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~---~~~~i~~l~~~~~~-~~iG------ag~v-~~-~~~---~ 69 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG---ALEAIRALRKEFPE-ALIG------AGTV-LT-PEQ---A 69 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHHCCC-CEEE------EEeC-CC-HHH---H
Confidence 3555689999999999999999999999999976322 23345555544431 2222 1221 11 222 3
Q ss_pred HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
+.++..|+++|=.- ....+..+.. +..+.++|.-.. || +| ..++.+.|||++|+
T Consensus 70 ~~a~~~Ga~~i~~p-~~~~~~~~~~---~~~~~~~i~gv~----t~--~e----~~~A~~~Gad~i~~ 123 (190)
T cd00452 70 DAAIAAGAQFIVSP-GLDPEVVKAA---NRAGIPLLPGVA----TP--TE----IMQALELGADIVKL 123 (190)
T ss_pred HHHHHcCCCEEEcC-CCCHHHHHHH---HHcCCcEECCcC----CH--HH----HHHHHHCCCCEEEE
Confidence 45677889988321 1222232222 234566766443 22 33 34445689999998
No 60
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.72 E-value=0.023 Score=58.79 Aligned_cols=42 Identities=33% Similarity=0.444 Sum_probs=37.9
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
..+.|++|+|+|+|..|+.++..+..+|++|+++++++.|++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~ 239 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL 239 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH
Confidence 456899999999999999999999999999999999987754
No 61
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.71 E-value=0.012 Score=58.91 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=34.9
Q ss_pred CCCEEEEEccchHHHHHHHHHH-hCCC-eEEEEeCChhhhhc
Q 014691 380 AGKLFVVIGAGGAGKALAYGAK-AKGA-RVVIANRTYENLQR 419 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~-~~g~-~i~v~nR~~~ka~~ 419 (420)
..++++|||+|+.|++.+.++. ..++ +|+|+||+++++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~ 167 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYA 167 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence 3578999999999999998875 4588 99999999999875
No 62
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.63 E-value=0.011 Score=60.45 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=32.6
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
+++++|+|+|+||.|..++..|+..|+ ++++++++
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356789999999999999999999999 99999997
No 63
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.60 E-value=0.015 Score=55.74 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=33.0
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~ 414 (420)
+++++|+|+|+||.|..++..|+..|+ ++++++.+.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 557899999999999999999999999 999999864
No 64
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.021 Score=56.14 Aligned_cols=43 Identities=35% Similarity=0.448 Sum_probs=37.7
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
..+++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~ 79 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDA 79 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 4567899999996 889999999999999999999999877543
No 65
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.52 E-value=0.053 Score=53.29 Aligned_cols=121 Identities=22% Similarity=0.262 Sum_probs=76.7
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEe----c-
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRR----Q- 342 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~----~- 342 (420)
...++++|++.....++. +++.+.++.+ .+++..|+-|-.|.-.. +|+ . +.+.+++...=- +
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~----i~~---~-~i~~~I~p~KDVDGl~~~ 125 (285)
T PRK14189 54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKH----IDS---H-KVIEAIAPEKDVDGFHVA 125 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCC----CCH---H-HHHhhcCcccCcccCChh
Confidence 447899999987666653 3677777777 46779999999997532 221 1 111222211100 0
Q ss_pred cCCeEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchH-HHHHHHHHHhCCCeEEEEeC
Q 014691 343 SDGKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 343 ~~g~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGa-ara~~~aL~~~g~~i~v~nR 412 (420)
.-|+++ |. -.--.|++.-|+.. +.+++||+|+|+|.|+. |+.++.-|...|+.|+++.+
T Consensus 126 n~g~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs 190 (285)
T PRK14189 126 NAGALMTGQPLFRPCTPYGVMKMLESI-----------GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHS 190 (285)
T ss_pred hhhHhhCCCCCCcCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecC
Confidence 001111 11 11145566655543 26789999999999996 99999999999999988874
No 66
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.51 E-value=0.018 Score=54.27 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=33.5
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.++.++|+|+|+||+|..++..|+..|+ ++++++.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4667899999999999999999999999 89999987
No 67
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.49 E-value=0.03 Score=51.07 Aligned_cols=42 Identities=36% Similarity=0.419 Sum_probs=36.6
Q ss_pred ccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 376 ~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
...+.|+++.|+|.|..|++++..|..+|++|+.++|+....
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChh
Confidence 367889999999999999999999999999999999987643
No 68
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.45 E-value=0.62 Score=44.16 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=85.0
Q ss_pred EEeec--CCCHHHHHHHHHhhhhcCCCEE--EEEecCCCCCCchhHHHHHH---hhCCCcEEEEeccCCCCCCCC--CCH
Q 014691 27 CVPIM--GESVDKMVVDMGKANASGADLV--EIRLDGLKNFNPRENIKTLI---KESPVPTLFTYRPIWEGGQYD--GDE 97 (420)
Q Consensus 27 cv~l~--~~~~~e~~~~~~~~~~~~~D~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~ 97 (420)
|+++. .++.+....+++++...|+|.+ .+|.-.+......+.+..++ +...+|+|+.... +|.... .++
T Consensus 65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--~g~~~~~~~~~ 142 (235)
T cd00958 65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--RGPAVKNEKDP 142 (235)
T ss_pred CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--cCCcccCccCH
Confidence 34444 4677777888888889999988 77765443211122344443 3468999987654 232221 233
Q ss_pred HHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691 98 NERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV 170 (420)
Q Consensus 98 ~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv 170 (420)
++.....+.+.+.|+|||=+....+.+.++++... -...|+++=.. +..+.++..+.++++.+.|++-+
T Consensus 143 ~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 143 DLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence 33333466788899999999654444555666532 34556666321 22356678888899999999855
No 69
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.40 E-value=0.5 Score=46.51 Aligned_cols=84 Identities=26% Similarity=0.408 Sum_probs=58.2
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---------C-CCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCC
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---------L-KNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQY 93 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~---------l-~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~ 93 (420)
.+.+.|.+.+.++...-++.+.+.|+|.||+=+-+ + .+.+. .+.++.+++..++|+.+-++..
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------ 164 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------ 164 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence 36689999999999998888888899999995432 1 11110 1234444444588998887631
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEEE
Q 014691 94 DGDENERVDVLRLAMELGADYIDV 117 (420)
Q Consensus 94 ~~~~~~~~~ll~~~~~~~~d~iDi 117 (420)
.++-.++.+.+.+.|+|+|++
T Consensus 165 ---~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 165 ---VTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred ---chhHHHHHHHHHHcCCCEEEE
Confidence 124556777888899999987
No 70
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.077 Score=52.18 Aligned_cols=124 Identities=22% Similarity=0.325 Sum_probs=77.4
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g 345 (420)
...++++|++.....++. +++...++.+ .++++.|+-|-.|....+ ...++.+++ .+.+-..+.. + -|
T Consensus 60 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~-N---~g 134 (287)
T PRK14176 60 HKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP-AKDADGFHPY-N---MG 134 (287)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc-cccccccChh-h---hh
Confidence 457899999987766653 3677777777 567899999999975322 111111111 0111111100 0 01
Q ss_pred eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
+++ |. -.--.|++..|+.. +.+++||+|+|+|.|. +|+.++.-|...|+.|++++.
T Consensus 135 ~l~~g~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs 196 (287)
T PRK14176 135 KLMIGDEGLVPCTPHGVIRALEEY-----------GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHV 196 (287)
T ss_pred hHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEec
Confidence 111 11 11245566665543 2678999999999999 999999999999999999884
No 71
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.38 E-value=0.02 Score=57.82 Aligned_cols=37 Identities=32% Similarity=0.529 Sum_probs=34.1
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~ 414 (420)
.+++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4667899999999999999999999999 999999974
No 72
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.36 E-value=3.5 Score=43.29 Aligned_cols=211 Identities=14% Similarity=0.123 Sum_probs=134.3
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (420)
+.++.+.-++...+.|.+.||.- .|. |...++.+.++.+++. .+.++..-+|..+--|..+.+++-..+.++
T Consensus 24 ~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~ 103 (448)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQ 103 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHH
Confidence 34444444455556799999994 442 2233456667777654 345665558877666766666777778899
Q ss_pred HHHHhCCcEEEEEcccccc-hhHHHh-hcCCCCcEEE--EEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691 106 LAMELGADYIDVELQVARE-FNDSIR-GKKPEKCKVI--VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDI 179 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~~~~~-~~~~l~-~~~~~~~kiI--~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~ 179 (420)
++++.|+++|-|=...++- .+.... .+++.+..+. +|+-+ ..--+.+.+.+..+++.+.|||.+-|+=|. -++
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P 182 (448)
T PRK12331 104 KSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT-SPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTP 182 (448)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec-CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCH
Confidence 9999999998886554321 122222 2333454443 44432 211155778999999999999999998776 468
Q ss_pred HHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 180 TDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 180 ~D~~~ll~~~~~-~~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
.++.++.+.++. .+.|+-.. +.--+|..+=+..-.-|....=+++..- +...||++.+++...++.
T Consensus 183 ~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~gl-g~gaGN~~tE~lv~~L~~ 251 (448)
T PRK12331 183 YVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPF-AGGTSQPATESMVAALQD 251 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeecccc-CCCcCCHhHHHHHHHHHh
Confidence 899888887654 35665543 3444555555555556665555555532 234789999998877764
No 73
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.36 E-value=0.022 Score=57.37 Aligned_cols=43 Identities=30% Similarity=0.439 Sum_probs=37.3
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHh-CCC-eEEEEeCChhhhhc
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKA-KGA-RVVIANRTYENLQR 419 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~-~g~-~i~v~nR~~~ka~~ 419 (420)
.++++|+|+|+|| |.+|+.++..|.. .|+ +++++||+.++++.
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~ 196 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE 196 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH
Confidence 4688999999999 6799999999975 477 99999999888765
No 74
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.35 E-value=0.4 Score=44.44 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=84.4
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV 103 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l 103 (420)
++||.+-..+.++.+.-++.+ ..+.|+||+-.-++.... .+.++.+++.. +.++++....- +-| .+ .
T Consensus 1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~-------~~--~ 68 (206)
T TIGR03128 1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG-------EY--E 68 (206)
T ss_pred CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch-------HH--H
Confidence 478899999999999988876 778999999544443322 34677777653 55677665532 111 11 3
Q ss_pred HHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691 104 LRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA 173 (420)
Q Consensus 104 l~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia 173 (420)
.+.+.+.|+|+|-+-.......+.++. ..++.+.++++..++.. | ..+....+.+.|+|++|+-
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-t-----~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVK-D-----KVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCC-C-----hHHHHHHHHHcCCCEEEEc
Confidence 566788899999876655432222333 22456889998766431 2 3344555667799999883
No 75
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.35 E-value=0.083 Score=51.93 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=77.9
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG-- 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g-- 345 (420)
...++++|++.....++. +++.+.++.+ .+++..|+-|-.|.... +|+. +.+.+++.-.=- ||
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~----~~~~----~i~~~I~p~KDV--DGl~ 124 (285)
T PRK10792 55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAH----IDNV----KVLERIHPDKDV--DGFH 124 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCHH----HHHhccCccccc--CccC
Confidence 457889999987666643 3677777777 46779999999997532 2221 122222222100 11
Q ss_pred -----eE-EEE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCC
Q 014691 346 -----KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 346 -----~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~ 413 (420)
++ .|. -.--.|++..|+.. +.+++||+++|+|-|. +|+.++.-|...|+.|+++.+.
T Consensus 125 ~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~ 192 (285)
T PRK10792 125 PYNVGRLAQRIPLLRPCTPRGIMTLLERY-----------GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF 192 (285)
T ss_pred hhhHhHHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC
Confidence 11 111 11245566665543 2678999999999999 9999999999999999998864
No 76
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.31 E-value=0.024 Score=54.54 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=32.9
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3567899999999999999999999999 99999875
No 77
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.29 E-value=2.9 Score=44.39 Aligned_cols=211 Identities=16% Similarity=0.092 Sum_probs=135.7
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (420)
+.+|++.-++..-+.|.+.||.= .|- +...+|.+.++.+++.. +.|+-.-+|..+==|..+.+++-....++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 45566665555556799999996 663 22235667787777654 57777778976666666667777778899
Q ss_pred HHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEE--EEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691 106 LAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKV--IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDI 179 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~~~~-~~~~~l~-~~~~~~~ki--I~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~ 179 (420)
.+.+.|+|.+-|=...++ +.++... ..++.+..+ -++|-. ..--+.+.+.+..+++.+.|||.+-|+=|+ -++
T Consensus 105 ~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P 183 (499)
T PRK12330 105 KSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKP 183 (499)
T ss_pred HHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCH
Confidence 999999999888544432 1122211 122223222 334411 101145678999999999999999988776 478
Q ss_pred HHHHHHHHHhccC---CCCEEEEe--cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 180 TDVARVFQITVHS---QVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 180 ~D~~~ll~~~~~~---~~p~I~~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
.++.++.+.++.. +.|+-..+ .--++..+=+.+---|....=+++.. -+-++||++.+++...++.
T Consensus 184 ~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~G-lg~~aGn~atE~vv~~L~~ 254 (499)
T PRK12330 184 QPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISS-MSLGPGHNPTESLVEMLEG 254 (499)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccc-ccccccchhHHHHHHHHHh
Confidence 9999888877543 46766443 33344455555555565554455554 2467899999998877764
No 78
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.28 E-value=0.16 Score=46.94 Aligned_cols=119 Identities=20% Similarity=0.168 Sum_probs=66.9
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
.++..+...+.+++...++.+.+.|+.++|+|...... .+.++.+.+.. |.+ ... +|.. ... ++ +
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~--~~~-~~g----~gtv-l~~-d~---~ 77 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKL--PEC-IIG----TGTI-LTL-ED---L 77 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhC--CCc-EEe----EEEE-EcH-HH---H
Confidence 35556899999999999999999999999999875432 23344333322 321 010 1221 122 33 4
Q ss_pred HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
+.|++.|+++|=+-- ..++..+ .... .+--.++. .| ||+ | +.++.+.|+|++|+
T Consensus 78 ~~A~~~gAdgv~~p~-~~~~~~~-~~~~-~~~~~i~G-~~----t~~--e----~~~A~~~Gadyv~~ 131 (187)
T PRK07455 78 EEAIAAGAQFCFTPH-VDPELIE-AAVA-QDIPIIPG-AL----TPT--E----IVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHcCCCEEECCC-CCHHHHH-HHHH-cCCCEEcC-cC----CHH--H----HHHHHHCCCCEEEE
Confidence 467778999972211 1122222 1111 12234454 55 432 3 44555689999998
No 79
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.24 E-value=2.2 Score=38.52 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=90.2
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh--C-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE--S-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~--~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 110 (420)
+.+.+...++.+.+.|+|.+++-- +.++.+.+. . +.|+++.+-... +. ..-++-.+..+.+.+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~--~~--~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPT--GL--TTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCC--CC--CcHHHHHHHHHHHHHc
Confidence 677777777777888999999875 233333332 2 588887665322 11 2245677888999999
Q ss_pred CCcEEEEEcccc-------c---chhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC---
Q 014691 111 GADYIDVELQVA-------R---EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTAL--- 177 (420)
Q Consensus 111 ~~d~iDiEl~~~-------~---~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~--- 177 (420)
|+|.+.+-.... + +.++.+...-+.+..+++- +.-..+.+.+++.+..+.+...|+|.+|......
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy-~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~ 156 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI-LETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG 156 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE-EECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence 999999864431 1 2333343221134555543 3322233456677776667788999999876422
Q ss_pred -CHHHHHHHHHHhccCCCCEEEEe
Q 014691 178 -DITDVARVFQITVHSQVPIIGLV 200 (420)
Q Consensus 178 -s~~D~~~ll~~~~~~~~p~I~~~ 200 (420)
+.+++..+.+... .+.|++..+
T Consensus 157 ~~~~~~~~i~~~~~-~~~~v~~~g 179 (201)
T cd00945 157 ATVEDVKLMKEAVG-GRVGVKAAG 179 (201)
T ss_pred CCHHHHHHHHHhcc-cCCcEEEEC
Confidence 5555555544432 134555443
No 80
>PRK06196 oxidoreductase; Provisional
Probab=95.23 E-value=0.028 Score=55.55 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=37.3
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.++++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~ 64 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAR 64 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3567899999997 88999999999999999999999987764
No 81
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.16 E-value=0.026 Score=53.55 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=32.4
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+.+++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3557899999999999999999999999 99999765
No 82
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.13 E-value=0.026 Score=56.27 Aligned_cols=40 Identities=30% Similarity=0.526 Sum_probs=36.0
Q ss_pred CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
.|+.++|.|| ||.|++++..|++.|++|.+++|+.++.++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~ 92 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKD 92 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Confidence 5889999996 889999999999999999999999887653
No 83
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.10 E-value=0.028 Score=56.76 Aligned_cols=37 Identities=38% Similarity=0.518 Sum_probs=33.8
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~ 414 (420)
.++.++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3567899999999999999999999999 999999874
No 84
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.08 E-value=0.052 Score=56.05 Aligned_cols=41 Identities=37% Similarity=0.477 Sum_probs=37.3
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
..+.|++|+|+|.|..|+.++..+..+|++|+++++++.++
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA 231 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH
Confidence 34689999999999999999999999999999999988764
No 85
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.04 E-value=0.03 Score=54.62 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=33.1
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+++++|+|+|+||+|..++.+|+..|+ +|+|++.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678899999999999999999999998 99999865
No 86
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.01 E-value=0.14 Score=50.23 Aligned_cols=119 Identities=17% Similarity=0.248 Sum_probs=77.6
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
-..++++|++.....++. +++.+.++.+ .++...|+-|-+|+... +|+. +.+.+++...=- |
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~----i~~~----~i~~~I~p~KDV--DGl~ 122 (282)
T PRK14180 53 EKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAH----INKN----NVIYSIKPEKDV--DGFH 122 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCHH----HHHhhcCccccc--cccC
Confidence 346899999987766554 3577777777 56779999999997532 2211 122222222111 1
Q ss_pred ----CeE-EEEe-----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 345 ----GKL-FGYN-----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 345 ----g~l-~G~N-----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
|++ .|.+ .--.|++.-|+.. +.+++||+++|+|.+. +|+-++.-|.+.|+.|+++.+
T Consensus 123 ~~n~g~l~~g~~~~~~PcTp~aii~lL~~y-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs 190 (282)
T PRK14180 123 PTNVGRLQLRDKKCLESCTPKGIMTMLREY-----------GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR 190 (282)
T ss_pred hhhHHHHhcCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC
Confidence 111 2211 1245556655543 2578999999999877 999999999999999999875
No 87
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.24 Score=48.72 Aligned_cols=119 Identities=22% Similarity=0.298 Sum_probs=76.0
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
....+++|++.....++- +++.+.++.+ .++.+.|+-|-.|... ++|+. +.+.+++.-.=- |
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~----~i~~~----~i~~~I~p~KDV--DGl~ 122 (285)
T PRK14191 53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPR----HIDTK----MVLEAIDPNKDV--DGFH 122 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCHH----HHHhcCCccccc--cccC
Confidence 457889999987666653 3677777777 4678999999999752 22221 111222211100 1
Q ss_pred ----CeE-EEEe----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeC
Q 014691 345 ----GKL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 345 ----g~l-~G~N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR 412 (420)
|++ .|.+ .--.|++.-|+.. +.+++||+|+|||.| -+|+.++.-|.+.|+.|+++..
T Consensus 123 ~~n~g~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs 189 (285)
T PRK14191 123 PLNIGKLCSQLDGFVPATPMGVMRLLKHY-----------HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI 189 (285)
T ss_pred hhhHHHHhcCCCCCCCCcHHHHHHHHHHh-----------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC
Confidence 111 1111 1244555555443 267899999999999 6999999999999999888763
No 88
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.90 E-value=1 Score=41.67 Aligned_cols=108 Identities=26% Similarity=0.320 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHH---HhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691 36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTL---IKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA 112 (420)
Q Consensus 36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l---~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~ 112 (420)
+++..+++.+...|+|+|++|.-.+...+....++.+ ....+.|+++. +.++.+.+.|+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ga 82 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAVGA 82 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHcCC
Confidence 4566677777888999999997544321111122222 23346777753 12456677899
Q ss_pred cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691 113 DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA 173 (420)
Q Consensus 113 d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia 173 (420)
++|=+...... ...+...+..+.++-+|.| | .+|+ .+....|+|++++-
T Consensus 83 d~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~----t--~~e~----~~a~~~gaD~v~~~ 131 (212)
T PRK00043 83 DGVHLGQDDLP--VADARALLGPDAIIGLSTH----T--LEEA----AAALAAGADYVGVG 131 (212)
T ss_pred CEEecCcccCC--HHHHHHHcCCCCEEEEeCC----C--HHHH----HHHhHcCCCEEEEC
Confidence 98777543221 1222222345667888887 2 2233 34446899999873
No 89
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.87 E-value=0.036 Score=56.35 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=33.6
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~ 414 (420)
.+++++|+|+|+||.|..++..|+..|+ +++|++.+.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3567899999999999999999999999 999999863
No 90
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.87 E-value=4.5 Score=42.73 Aligned_cols=210 Identities=15% Similarity=0.118 Sum_probs=130.4
Q ss_pred CHHHHHHHHHhhhhcCCCEEEE----EecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEI----RLDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (420)
+.++.+.-++...+.|.+.||. ..|. |...++.+.++.+++.. +.++-.-+|..+--|.....++-....++
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 4455555555556679999999 3442 12224456677776542 45666556866666654444454556788
Q ss_pred HHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEEEEccc-CCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CC
Q 014691 106 LAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSSHN-YQYTP--SVEDLSNLVARIQASGADIVKFATTA--LD 178 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~-f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s 178 (420)
.+++.|++.|-|=...++ .....+..+++.+..+...... | .| +.+.+.+..+++.+.|||.+-|+=|. -+
T Consensus 103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~ 180 (467)
T PRK14041 103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTV--SPVHTLEYYLEFARELVDMGVDSICIKDMAGLLT 180 (467)
T ss_pred HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcC
Confidence 999999999888655443 1112222233445555544332 3 24 55778999999999999999888766 57
Q ss_pred HHHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 179 ITDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 179 ~~D~~~ll~~~~~-~~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
+.++.++.+.++. .+.|+-.. +.--+|..+=+.+-.-|....=+++..- +...||++.+++...++-
T Consensus 181 P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~-g~gagN~atE~lv~~L~~ 250 (467)
T PRK14041 181 PKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPF-SMGTSQPPFESMYYAFRE 250 (467)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeecccc-CCCCCChhHHHHHHHHHh
Confidence 8899888887654 35665543 4444455555555555655544555431 223579999998877763
No 91
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.79 E-value=2 Score=40.02 Aligned_cols=145 Identities=18% Similarity=0.125 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691 32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG 111 (420)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 111 (420)
..+.+++.+-++++.+.++|.+=+.--++. .....+... ...+-|.-.-..|. .+.+.+..-.+.+++.|
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p~~v~------~~~~~l~~~-~~~v~~~~~fp~g~---~~~~~k~~eve~A~~~G 82 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNPCFVP------LAREALKGS-GVKVCTVIGFPLGA---TTTEVKVAEAREAIADG 82 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcHHHHH------HHHHHcCCC-CcEEEEEEecCCCC---CcHHHHHHHHHHHHHcC
Confidence 347788888888877778888876532211 122222222 23344443333333 23456666688999999
Q ss_pred CcEEEEEcccc-------cchhHHHh---h-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--e--ec
Q 014691 112 ADYIDVELQVA-------REFNDSIR---G-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--T--TA 176 (420)
Q Consensus 112 ~d~iDiEl~~~-------~~~~~~l~---~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia--~--~~ 176 (420)
+|-||+=++.. +...+++. . .+....|+|+-.-.. +.+++....+-+.+.|||++|.- . ..
T Consensus 83 Adevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~~~ 158 (203)
T cd00959 83 ADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGPGG 158 (203)
T ss_pred CCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCC
Confidence 99999966543 11233333 2 222234555443322 35678888888889999999987 3 23
Q ss_pred CCHHHHHHHHHHhc
Q 014691 177 LDITDVARVFQITV 190 (420)
Q Consensus 177 ~s~~D~~~ll~~~~ 190 (420)
.+++|+..+.+...
T Consensus 159 at~~~v~~~~~~~~ 172 (203)
T cd00959 159 ATVEDVKLMKEAVG 172 (203)
T ss_pred CCHHHHHHHHHHhC
Confidence 56788877766654
No 92
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=94.76 E-value=1.9 Score=41.62 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH---HHHHHH
Q 014691 32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER---VDVLRL 106 (420)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~~ 106 (420)
..+++++. .+.+.|||-|||.-++-. .+.|. ..++.+++...+|+.+-+|.. ||-|-.++++. .+-++.
T Consensus 8 v~s~~~a~----~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~gdF~Ys~~E~~~M~~di~~ 81 (248)
T PRK11572 8 CYSMECAL----TAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPR--GGDFCYSDGEFAAMLEDIAT 81 (248)
T ss_pred ECCHHHHH----HHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHHH
Confidence 56666655 445679999999998754 34442 345666666799999999974 45566666443 344566
Q ss_pred HHHhCCcEEEE-----EcccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHH
Q 014691 107 AMELGADYIDV-----ELQVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDIT 180 (420)
Q Consensus 107 ~~~~~~d~iDi-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~ 180 (420)
+.++|+|-|=+ |-..+.+..+.+... .++.++ .||- |+.+++. .+-++.+.++|.|=|==.--+.+..
T Consensus 82 ~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~-a~~~~v--TFHRAfD~~~d~---~~al~~l~~lG~~rILTSGg~~~a~ 155 (248)
T PRK11572 82 VRELGFPGLVTGVLDVDGHVDMPRMRKIMAA-AGPLAV--TFHRAFDMCANP---LNALKQLADLGVARILTSGQQQDAE 155 (248)
T ss_pred HHHcCCCEEEEeeECCCCCcCHHHHHHHHHH-hcCCce--EEechhhccCCH---HHHHHHHHHcCCCEEECCCCCCCHH
Confidence 66788886544 444555666777643 245555 5675 8888854 4567777788865443334445566
Q ss_pred HHHHHHHHh
Q 014691 181 DVARVFQIT 189 (420)
Q Consensus 181 D~~~ll~~~ 189 (420)
|.+..++-+
T Consensus 156 ~g~~~L~~l 164 (248)
T PRK11572 156 QGLSLIMEL 164 (248)
T ss_pred HHHHHHHHH
Confidence 666555543
No 93
>PLN02494 adenosylhomocysteinase
Probab=94.75 E-value=0.062 Score=56.27 Aligned_cols=41 Identities=37% Similarity=0.464 Sum_probs=37.0
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
..+.||+++|+|.|..|+.++..+..+|++|+++++++.++
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~ 290 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICA 290 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 45789999999999999999999999999999999987653
No 94
>PRK08223 hypothetical protein; Validated
Probab=94.66 E-value=0.039 Score=54.29 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=33.1
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3567899999999999999999999999 99999975
No 95
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.64 E-value=0.042 Score=56.15 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=32.6
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
+++++|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 457899999999999999999999999 99999986
No 96
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.60 E-value=1.9 Score=38.48 Aligned_cols=131 Identities=18% Similarity=0.116 Sum_probs=75.9
Q ss_pred ecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--h--hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691 30 IMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP--R--ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (420)
Q Consensus 30 l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~--~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (420)
......+...+.++.+.+.|+|+++++......... . +.+..+.+..+.|+++-......+ +......+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~ 78 (200)
T cd04722 6 LAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA-------AAVDIAAA 78 (200)
T ss_pred cccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch-------hhhhHHHH
Confidence 333333555666666667799999999876543221 1 125555556688988876532211 11111134
Q ss_pred HHHHhCCcEEEEEccc------ccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691 106 LAMELGADYIDVELQV------AREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA 176 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~~------~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~ 176 (420)
.+.+.|+|+|.|-... ..+.++.+...- .+..++...|...... +. .+.+.|+|++.+....
T Consensus 79 ~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~---~~-----~~~~~g~d~i~~~~~~ 146 (200)
T cd04722 79 AARAAGADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA---AA-----AAEEAGVDEVGLGNGG 146 (200)
T ss_pred HHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc---hh-----hHHHcCCCEEEEcCCc
Confidence 6677789999887665 233444554321 3688888887532211 11 1567899999876543
No 97
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.59 E-value=4.9 Score=43.73 Aligned_cols=211 Identities=15% Similarity=0.142 Sum_probs=132.7
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (420)
+.++.+.-++...+.|.+.+|.- .|. |...++.+.++.+++.. +.++-.-+|..+-=|..+.+++-..+.++
T Consensus 24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~ 103 (592)
T PRK09282 24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE 103 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence 44555555555566799999995 553 22235566677766553 57777778866666665666667777899
Q ss_pred HHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691 106 LAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDI 179 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s~ 179 (420)
++.+.|++.+=|=...++ .....+...++.+..+-.... +...| +.+.+.+..+++.+.|||.+=|+=|. -++
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~-~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P 182 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTIS-YTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTP 182 (592)
T ss_pred HHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEE-eccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCH
Confidence 999999998877654432 222222223334545543221 11134 56788999999999999999888776 468
Q ss_pred HHHHHHHHHhccC-CCCEEE--EecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 180 TDVARVFQITVHS-QVPIIG--LVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 180 ~D~~~ll~~~~~~-~~p~I~--~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
.++.++.+.++.. +.|+-. .+..-++..+=+..--.|..+.=+++..- +--.||++++++...++.
T Consensus 183 ~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~-g~~agn~~~e~vv~~L~~ 251 (592)
T PRK09282 183 YAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPL-AFGTSQPPTESMVAALKG 251 (592)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeecccc-CCCcCCHhHHHHHHHHHh
Confidence 8998888876542 455443 35555566666665556655544454431 123478888887766653
No 98
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.58 E-value=0.11 Score=50.93 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=78.2
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
...++++|++.....++- +++.+.++.+ .++++.|+-|-+|+... +|+ -+.+.+++--.=- |
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~----~~i~~~I~p~KDV--DGl~ 124 (284)
T PRK14177 55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQ----IDE----RAAFDRIALEKDV--DGVT 124 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH----HHHHhccCccccc--ccCC
Confidence 457899999987766643 3577777777 46789999999997532 221 1111222222100 1
Q ss_pred ----CeE-EEE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEe-CC
Q 014691 345 ----GKL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIAN-RT 413 (420)
Q Consensus 345 ----g~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~n-R~ 413 (420)
|++ .|. -.--.|++.-|+.. +.+++||+|+|+|.+. +|+-++.-|.+.|+.|++++ ||
T Consensus 125 ~~n~g~l~~g~~~~~PcTp~avi~ll~~y-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T 193 (284)
T PRK14177 125 TLSFGKLSMGVETYLPCTPYGMVLLLKEY-----------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT 193 (284)
T ss_pred hhhHHHHHcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 111 111 11245666655543 2678999999999877 99999999999999999988 44
Q ss_pred h
Q 014691 414 Y 414 (420)
Q Consensus 414 ~ 414 (420)
.
T Consensus 194 ~ 194 (284)
T PRK14177 194 Q 194 (284)
T ss_pred C
Confidence 3
No 99
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.28 Score=48.14 Aligned_cols=119 Identities=23% Similarity=0.255 Sum_probs=76.7
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG-- 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g-- 345 (420)
....+++|++.....++- +++.+.++.+ .+++..|.-|-+|+.. ++|+ -+.+.+++.-.=- ||
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~----~~~~----~~i~~~I~p~KDV--DGl~ 123 (278)
T PRK14172 54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPK----HLDE----KKITNKIDANKDI--DCLT 123 (278)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CCCH----HHHHhccCccccc--CccC
Confidence 457899999988777653 3576777777 4677999999999753 2222 1122222222100 11
Q ss_pred -----eE-EEE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 346 -----KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 346 -----~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
++ .|. -.--.|++.-|+.. +.+++||+|+|+|-+. +|+-++.-|.+.|+.|+++..
T Consensus 124 ~~n~g~l~~g~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs 190 (278)
T PRK14172 124 FISVGKFYKGEKCFLPCTPNSVITLIKSL-----------NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHS 190 (278)
T ss_pred HhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence 11 111 11234555555442 2678999999999877 999999999999999999973
No 100
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.52 E-value=0.074 Score=41.59 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=30.3
Q ss_pred EEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
+++|+|+|-+|--++..|.++|.+|+++.|.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998753
No 101
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.50 E-value=1.7 Score=42.77 Aligned_cols=122 Identities=15% Similarity=0.227 Sum_probs=78.0
Q ss_pred HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc------------------ccchhHHHh
Q 014691 69 IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV------------------AREFNDSIR 130 (420)
Q Consensus 69 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~------------------~~~~~~~l~ 130 (420)
++.+.+...+|+++...+ | ++.....+..+..++.|+.-|-||-.. .++..+.+.
T Consensus 70 ~~~I~~a~~~Pv~~D~d~----G---g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~ 142 (285)
T TIGR02320 70 VEFMFDVTTKPIILDGDT----G---GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIR 142 (285)
T ss_pred HHHHHhhcCCCEEEecCC----C---CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHH
Confidence 444555678999998763 4 356667778888899999999998753 122333343
Q ss_pred h---cCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhcc--CCCCEE
Q 014691 131 G---KKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH--SQVPII 197 (420)
Q Consensus 131 ~---~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~--~~~p~I 197 (420)
. ++.+.--+|...-| +-..-..+|..++.+...+.|||++=+-....+.+++.++.+.+.. ++.|++
T Consensus 143 Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 143 AGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV 215 (285)
T ss_pred HHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence 2 22222123333323 2112247788888888889999998876556888888887776542 245764
No 102
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.44 E-value=0.15 Score=50.02 Aligned_cols=126 Identities=19% Similarity=0.289 Sum_probs=77.9
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHH--hhhhcccHHHHHhcceeEEEEeccCC
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAV--KCCDEVDTVAKSIGAVNCIIRRQSDG 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~--~~~d~l~~~A~~iGAvNTi~~~~~~g 345 (420)
...++++|++.....++- +++...++.+ .++.+.|+-|-.|+...+- ..++.+++ .+.+-..+..- -|
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~N----~g 126 (282)
T PRK14169 52 QRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDP-DKDVDGFSPVS----VG 126 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCc-ccCcccCChhh----hH
Confidence 457899999987766654 2577777777 4678999999999763221 11111111 01111111110 01
Q ss_pred eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEe-CCh
Q 014691 346 KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIAN-RTY 414 (420)
Q Consensus 346 ~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~n-R~~ 414 (420)
+++ |. -.--.|++.-|+.. +.+++||+++|||.+. +|+-++.-|.+.|+.|+++. ||.
T Consensus 127 ~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~ 191 (282)
T PRK14169 127 RLWANEPTVVASTPYGIMALLDAY-----------DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR 191 (282)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC
Confidence 111 10 11244555555443 2678999999999877 99999999999999999985 554
No 103
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.44 E-value=0.06 Score=49.18 Aligned_cols=40 Identities=28% Similarity=0.447 Sum_probs=32.6
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
..+++|+|+|||+|-+|--+++.|.+.|.+|+++-|++.+
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 4578999999999999999999999999999999998753
No 104
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.44 E-value=0.056 Score=54.02 Aligned_cols=43 Identities=37% Similarity=0.448 Sum_probs=39.0
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
.++.++.++|.|+ .|.|++++.+|+..|++|++..|+.+++++
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~ 74 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEE 74 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 4567899999996 999999999999999999999999988775
No 105
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.42 E-value=0.29 Score=48.04 Aligned_cols=124 Identities=20% Similarity=0.299 Sum_probs=75.6
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g 345 (420)
....+++|++..-..++. +++.+.++.+ .+++..|+-|-.|....+ ...++.+++ .+.+-..+.. + -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~-n---~g 127 (281)
T PRK14183 53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDP-KKDVDGFHPY-N---VG 127 (281)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCc-hhcccccChh-h---hh
Confidence 457889999976555432 3577777777 567899999999975221 111111111 1111111111 0 01
Q ss_pred eE-EEEe----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 346 KL-FGYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 346 ~l-~G~N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
++ .|.+ .--.|++.-|++. +.+++||+++|+|.|. +|+-++.-|.+.|+.|+++..
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs 189 (281)
T PRK14183 128 RLVTGLDGFVPCTPLGVMELLEEY-----------EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI 189 (281)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHHc-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 11 1110 1145666655543 2678999999999885 999999999999999988873
No 106
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.21 Score=49.17 Aligned_cols=117 Identities=23% Similarity=0.332 Sum_probs=75.4
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeE
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL 347 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l 347 (420)
....+++|++.....++- +++.+.++.+ .++.+.|+-|-.|.-.. +|+ -+.+.+++.-.=- || +
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~----i~~----~~i~~~I~p~KDV--DG-l 122 (284)
T PRK14179 54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKH----INE----EKILLAIDPKKDV--DG-F 122 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCC----CCH----HHHHhccCccccc--cc-c
Confidence 357899999987776663 3577777777 46789999999997532 221 1111222211100 11 1
Q ss_pred EEEe-------------cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEe
Q 014691 348 FGYN-------------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIAN 411 (420)
Q Consensus 348 ~G~N-------------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~n 411 (420)
+-+| .--.|++.-|+.. +.+++||+++|||. |-+|+.++.-|.+.|+.|+++.
T Consensus 123 ~~~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~ 189 (284)
T PRK14179 123 HPMNTGHLWSGRPVMIPCTPAGIMEMFREY-----------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH 189 (284)
T ss_pred CHhhHHHHhCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence 1111 1134555555442 26789999999998 6699999999999999999984
No 107
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.30 E-value=0.073 Score=55.83 Aligned_cols=41 Identities=37% Similarity=0.421 Sum_probs=37.7
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
..+.||+++|+|.|.+|++++..|..+|++|+++++++.++
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a 290 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICA 290 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhH
Confidence 56899999999999999999999999999999999987665
No 108
>PRK06153 hypothetical protein; Provisional
Probab=94.29 E-value=0.044 Score=55.94 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=32.0
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
+++++|+|+|+||+|..++..|+..|+ +|++++-+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 457899999999999999999999999 99999864
No 109
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.26 E-value=0.056 Score=50.27 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=32.6
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+++++|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3557899999999999999999999999 99999865
No 110
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.22 E-value=0.073 Score=56.53 Aligned_cols=39 Identities=33% Similarity=0.236 Sum_probs=35.9
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+.+|+|+|+|.+|.+++..+..+|++|+++++++++.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle 202 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAE 202 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 478999999999999999999999999999999987765
No 111
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.14 E-value=0.081 Score=40.43 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=26.2
Q ss_pred EEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 386 VIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 386 viGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
|||+|-+|.++++.|.+.|.+|+|+.|+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999864
No 112
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.06 E-value=5.8 Score=37.90 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=122.2
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCC----C-CCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLK----N-FNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLA 107 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~-~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 107 (420)
+.++.++-++.+.+.|+|.||+=.=--. - .++.+.++.+.+.. +.++.+-+|.. .+.++.+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-------------~~~i~~a 83 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR-------------EKGIERA 83 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc-------------hhhHHHH
Confidence 5666777677767789999998532111 0 12233455555443 45665555531 3456677
Q ss_pred HHhCCcEEEEEccccc----------------chhHHHhhcCCCCcEEEEEc-ccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691 108 MELGADYIDVELQVAR----------------EFNDSIRGKKPEKCKVIVSS-HNYQYTPSVEDLSNLVARIQASGADIV 170 (420)
Q Consensus 108 ~~~~~d~iDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~-H~f~~tP~~~el~~~~~~~~~~gaDiv 170 (420)
.+.|++.|-+=+...+ +..+.+...+..+..+.++. ..+.+.-+.+++.+.++++.++|+|.+
T Consensus 84 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i 163 (265)
T cd03174 84 LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEI 163 (265)
T ss_pred HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 8888898888765541 12222223456788888888 445421245789999999999999999
Q ss_pred EEEeec--CCHHHHHHHHHHhccC-C-CCEEEEecC--CcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHH
Q 014691 171 KFATTA--LDITDVARVFQITVHS-Q-VPIIGLVMG--ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244 (420)
Q Consensus 171 Kia~~~--~s~~D~~~ll~~~~~~-~-~p~I~~~MG--~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~ 244 (420)
-++-+. -+++++.++++.+... + .|+-..+=- .+|...=+..-..|..+.=+++.. -.-..|+++.+++...+
T Consensus 164 ~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G-~G~~~Gn~~~e~~~~~l 242 (265)
T cd03174 164 SLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNG-LGERAGNAATEDLVAAL 242 (265)
T ss_pred EechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccc-ccccccCccHHHHHHHH
Confidence 887443 5789999988876543 2 555443322 233333444444555444455543 12468999999988776
Q ss_pred hcc
Q 014691 245 NFR 247 (420)
Q Consensus 245 ~~~ 247 (420)
+..
T Consensus 243 ~~~ 245 (265)
T cd03174 243 EGL 245 (265)
T ss_pred Hhc
Confidence 643
No 113
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.05 E-value=0.076 Score=47.90 Aligned_cols=41 Identities=37% Similarity=0.443 Sum_probs=34.0
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+...+++|+|+|-+|+.|+..+..+|+++++++...++.+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~ 57 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLR 57 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHH
Confidence 34567999999999999999999999999999999877654
No 114
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.01 E-value=0.072 Score=57.21 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=35.8
Q ss_pred cCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 379 ~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+||.++|.|+ |+.|++++..|.+.|++|+++.|+.++++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~ 118 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAE 118 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 35789999997 88999999999999999999999988764
No 115
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.99 E-value=0.75 Score=45.04 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=88.8
Q ss_pred eeeccCccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHH
Q 014691 257 GIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS 331 (420)
Q Consensus 257 ~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~ 331 (420)
-++|+.-+....-.+-.+..+++|+...+..++. +++.+.++.+ .++.+.|.-|..|.=. ++|+- +.
T Consensus 36 ilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~----hld~~----~i 107 (283)
T COG0190 36 ILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPK----HLDEQ----KL 107 (283)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC----CCCHH----HH
Confidence 4556655444444556778999999987776653 3677777777 6788999999999532 23310 11
Q ss_pred hcceeEEEEe----c-cCCeEE-E---E-ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHH
Q 014691 332 IGAVNCIIRR----Q-SDGKLF-G---Y-NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGA 400 (420)
Q Consensus 332 iGAvNTi~~~----~-~~g~l~-G---~-NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL 400 (420)
+.++.--.=- + .-|++. + + -.--.|++.-|++. +.++.||+++|||.+. +||-++.-|
T Consensus 108 l~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~-----------~i~l~Gk~~vVVGrS~iVGkPla~lL 176 (283)
T COG0190 108 LQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEY-----------GIDLRGKNVVVVGRSNIVGKPLALLL 176 (283)
T ss_pred HhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcCcHHHHHHH
Confidence 1111111000 0 013332 2 0 12257888877764 2678999999999988 999999999
Q ss_pred HhCCCeEEEEeC
Q 014691 401 KAKGARVVIANR 412 (420)
Q Consensus 401 ~~~g~~i~v~nR 412 (420)
...++.|++++.
T Consensus 177 ~~~naTVtvcHs 188 (283)
T COG0190 177 LNANATVTVCHS 188 (283)
T ss_pred HhCCCEEEEEcC
Confidence 999999999885
No 116
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.99 E-value=0.27 Score=48.27 Aligned_cols=119 Identities=22% Similarity=0.327 Sum_probs=78.1
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG-- 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g-- 345 (420)
..+.+++|++.....++. +++.+.++.+ .++.+.|+-|-.|... ++|+ -+.+.+++.-.=- ||
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~----~i~~----~~i~~~I~p~KDV--DGl~ 121 (282)
T PRK14182 52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPK----HVDE----RAVLDAISPAKDA--DGFH 121 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccCc--CCCC
Confidence 447899999987766643 3577777777 5678999999999753 2221 1222333322111 11
Q ss_pred -----eEE-EE-----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 346 -----KLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 346 -----~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
+++ |. -.--.|++.-|+.. +.+++||+++|+|-+. +|+-++.-|.+.|+.|+++..
T Consensus 122 ~~n~g~l~~g~~~~~~PcTp~avi~ll~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs 189 (282)
T PRK14182 122 PFNVGALSIGIAGVPRPCTPAGVMRMLDEA-----------RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHS 189 (282)
T ss_pred HhHHHHHhCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 111 11 11245666666543 2678999999999887 999999999999999998874
No 117
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.97 E-value=0.92 Score=44.54 Aligned_cols=122 Identities=23% Similarity=0.305 Sum_probs=78.1
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG-- 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g-- 345 (420)
....+++|++.....++. +++.+.++.+ .+++..|+-|-.|.-. ++|+ -+.+.+++.-.=- ||
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~----~i~~----~~v~~~I~p~KDV--DGl~ 117 (279)
T PRK14178 48 HRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPK----GVDT----ERVIAAILPEKDV--DGFH 117 (279)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CCCH----HHHHhccCcccCc--ccCC
Confidence 446889999987666654 3677777777 5778999999999743 2222 1111222211100 11
Q ss_pred -----eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 346 -----KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 346 -----~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR~~ 414 (420)
+++ |. -.--.|++.-|+.. +.+++||+|+|+|-+ -.||.++.-|...|+.|+++.++.
T Consensus 118 ~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t 186 (279)
T PRK14178 118 PLNLGRLVSGLPGFAPCTPNGIMTLLHEY-----------KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT 186 (279)
T ss_pred hhhHHHHhCCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh
Confidence 111 10 11234555555442 267899999999988 599999999999999999888764
Q ss_pred h
Q 014691 415 E 415 (420)
Q Consensus 415 ~ 415 (420)
.
T Consensus 187 ~ 187 (279)
T PRK14178 187 E 187 (279)
T ss_pred h
Confidence 3
No 118
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.95 E-value=0.41 Score=47.19 Aligned_cols=123 Identities=23% Similarity=0.338 Sum_probs=77.4
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEe----c-
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRR----Q- 342 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~----~- 342 (420)
-..++++|++.....++. +++.+.++.+ .++++.|+-|-+|... ++|+ -+.+.+++.-.=- +
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~----~id~----~~i~~~I~p~KDVDGl~~~ 125 (288)
T PRK14171 54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPS----SIDK----NKILSAVSPSKDIDGFHPL 125 (288)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccccccCCcc
Confidence 457899999987766653 3566667666 4677999999999753 2221 1122222222100 0
Q ss_pred cCCeEE-EE-----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEe-CCh
Q 014691 343 SDGKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIAN-RTY 414 (420)
Q Consensus 343 ~~g~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~n-R~~ 414 (420)
.-|++. |. -.--.|++.-|+.. +.+++||+++|||-+. +||-++.-|.+.|+.|++++ ||.
T Consensus 126 N~g~l~~g~~~~~~PcTp~av~~lL~~y-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~ 194 (288)
T PRK14171 126 NVGYLHSGISQGFIPCTALGCLAVIKKY-----------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTH 194 (288)
T ss_pred chhhhhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 012221 11 01134555555443 2578999999999877 99999999999999999887 553
No 119
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.93 E-value=3.2 Score=38.94 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=69.1
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCC-CCCCCCHHHHHHHHHHHHHhCC
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEG-GQYDGDENERVDVLRLAMELGA 112 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~~~~~~ 112 (420)
+.++..+-++.+...|+-++++. . .+.++.+++..++|+|...|....+ -.+... ..+.++.+.+.|+
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~--~------~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~---~~~~v~~a~~aGa 89 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN--G------VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP---TLKEVDALAAAGA 89 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC--C------HHHHHHHHHhCCCCEEEEEecCCCCCCceECC---CHHHHHHHHHcCC
Confidence 33444544555556788888863 1 3467777766799998776621011 122111 2234677888899
Q ss_pred cEEEEEccc---cc-chhHHHh-hcCC-CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 113 DYIDVELQV---AR-EFNDSIR-GKKP-EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 113 d~iDiEl~~---~~-~~~~~l~-~~~~-~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
|+|=+.+.. +. +...++. ..++ .+..++...| +.+++ .++.+.|+|++.+
T Consensus 90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------t~ee~----~~a~~~G~d~i~~ 145 (221)
T PRK01130 90 DIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------TLEEG----LAAQKLGFDFIGT 145 (221)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------CHHHH----HHHHHcCCCEEEc
Confidence 988877653 10 2222332 2234 6788888766 23343 5677889999876
No 120
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.93 E-value=0.43 Score=47.14 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=76.7
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
....+++|++.....++. +++.+.++.+ .++...|+-|-.|... ++|+. +.+.+++.-.=- |
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~----~i~~~----~i~~~I~p~KDV--DGl~ 123 (294)
T PRK14187 54 QRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPN----HIDKN----LIINTIDPEKDV--DGFH 123 (294)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCHH----HHHhccCcccCc--ccCC
Confidence 457899999987666653 3566667767 5678999999999852 23221 112222222100 1
Q ss_pred ----CeE-EEEe------cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 345 ----GKL-FGYN------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 345 ----g~l-~G~N------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
|++ .|.+ .--.|++.-|+.. +.+++||+++|+|.+. +|+-++.-|.+.|+.|+++..
T Consensus 124 ~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs 192 (294)
T PRK14187 124 NENVGRLFTGQKKNCLIPCTPKGCLYLIKTI-----------TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHS 192 (294)
T ss_pred hhhHHHHhCCCCCCCccCcCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCC
Confidence 121 1211 1245555555543 2678999999999887 999999999999999998875
No 121
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.90 E-value=0.067 Score=61.08 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=33.2
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..||+|+|||+|.||.++|+.|+..|.+|+|+.|..
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 358999999999999999999999999999999864
No 122
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.90 E-value=0.33 Score=47.86 Aligned_cols=119 Identities=22% Similarity=0.330 Sum_probs=76.1
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
....+++|++.....++- +++.+.++.+ .+....|+-|-+|.-. ++|+. +.+.+++.-.=- |
T Consensus 51 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~----~i~~~----~i~~~I~p~KDV--DGl~ 120 (287)
T PRK14173 51 DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPP----HIDFQ----RVLEAIDPLKDV--DGFH 120 (287)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCHH----HHHhccCccccc--cccC
Confidence 346889999987776653 3577777777 4567999999999753 22221 122222222100 1
Q ss_pred ----CeEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 345 ----GKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 345 ----g~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
|+++ |. -.--.|++.-|+.. +.+++||+|+|||.+. +|+-++.-|.+.|+.|+++.+
T Consensus 121 ~~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs 187 (287)
T PRK14173 121 PLNVGRLWMGGEALEPCTPAGVVRLLKHY-----------GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHS 187 (287)
T ss_pred hhhhHHHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCC
Confidence 1111 11 11234555555432 2678999999999877 999999999999999988764
No 123
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.89 E-value=2.3 Score=42.02 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=57.6
Q ss_pred CcEEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCC-----C-----CchhHHH----HHHhhCCCcEEEEeccC
Q 014691 23 PTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKN-----F-----NPRENIK----TLIKESPVPTLFTYRPI 87 (420)
Q Consensus 23 ~~~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~-----~-----~~~~~l~----~l~~~~~~PiI~T~R~~ 87 (420)
.|. .+.+.+. +.++..+-++.+.+.++|+||+=+.+-.. . .+.+.+. .+++..++|+.+-+|..
T Consensus 100 ~p~-i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~ 178 (299)
T cd02940 100 KIL-IASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN 178 (299)
T ss_pred CeE-EEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 454 4678888 99999988887766789999998886432 0 1112333 33344579999998841
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 014691 88 WEGGQYDGDENERVDVLRLAMELGADYIDV 117 (420)
Q Consensus 88 ~eGG~~~~~~~~~~~ll~~~~~~~~d~iDi 117 (420)
.....++.+.+.+.|+|.|-+
T Consensus 179 ---------~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 179 ---------ITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred ---------chhHHHHHHHHHHcCCCEEEE
Confidence 124556777788889998753
No 124
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.80 E-value=0.18 Score=47.65 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~ 414 (420)
++|...+++..+... +.+++|++++|.|-|.+|+.++..|.++|+ .|.|.+.+.
T Consensus 3 g~Gv~~~~~~~~~~~-------~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 3 GYGVVVAMKAAMKHL-------GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred hhHHHHHHHHHHHHc-------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 567777777665421 246889999999999999999999999998 788888765
No 125
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.72 E-value=0.59 Score=46.06 Aligned_cols=119 Identities=22% Similarity=0.270 Sum_probs=77.1
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
...++++|++.....++. +++.+.++.+ .++.+.|+-|-.|.-. ++|+. +.+.+++.-.=- |
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~----~i~~~----~i~~~I~p~KDV--DGl~ 117 (287)
T PRK14181 48 VKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPK----HLDAQ----AILQAISPDKDV--DGLH 117 (287)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CcCHH----HHHhccCcccCc--ccCC
Confidence 457899999987766654 3677777777 5678999999999753 22221 122222222100 1
Q ss_pred ----CeEE-EE-----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhC----CCeEEE
Q 014691 345 ----GKLF-GY-----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVI 409 (420)
Q Consensus 345 ----g~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~----g~~i~v 409 (420)
|+++ |. -.--.|++.-|+.. +.+++||+|+|||-+. +||-++.-|.+. ++.|++
T Consensus 118 p~n~g~l~~g~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtv 186 (287)
T PRK14181 118 PVNMGKLLLGETDGFIPCTPAGIIELLKYY-----------EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTL 186 (287)
T ss_pred hhhHHHHhcCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEE
Confidence 1221 11 01145556655543 2678999999999877 999999999888 679999
Q ss_pred EeC
Q 014691 410 ANR 412 (420)
Q Consensus 410 ~nR 412 (420)
+..
T Consensus 187 chs 189 (287)
T PRK14181 187 LHS 189 (287)
T ss_pred eCC
Confidence 974
No 126
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.72 E-value=0.083 Score=58.00 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=33.1
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+++|+|||+|.+|.++++.|...|.+|+|+.+..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 358999999999999999999999999999999864
No 127
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.72 E-value=0.093 Score=59.53 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=32.7
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..||+|+|||+|.+|-++++.|...|++|+|+++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 46899999999999999999999999999999974
No 128
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.71 E-value=0.072 Score=54.86 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=32.1
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
+++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 456799999999999999999999999 99999975
No 129
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.70 E-value=0.37 Score=47.36 Aligned_cols=119 Identities=25% Similarity=0.364 Sum_probs=76.1
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG-- 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g-- 345 (420)
....+++|++.....++- +++.+.++.+ .++...|+-|-.|.-. ++|+. +.+.+++.-.=- ||
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~----~i~~~----~i~~~I~p~KDV--DGl~ 122 (284)
T PRK14170 53 QKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPE----HISEE----KVIDTISYDKDV--DGFH 122 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CCCHH----HHHhccCcccCc--ccCC
Confidence 446889999987666653 2576777777 5678999999999753 22221 122222222100 11
Q ss_pred -----eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 346 -----KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 346 -----~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
+++ |. -.--.|++.-|+.. +.+++||+|+|+|.+. +||-++.-|.+.|+.|+++..
T Consensus 123 p~N~g~l~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs 189 (284)
T PRK14170 123 PVNVGNLFIGKDSFVPCTPAGIIELIKST-----------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHS 189 (284)
T ss_pred hhhhhHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 111 10 01145666655543 2678999999999888 999999999999999988763
No 130
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.65 E-value=2.7 Score=39.37 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=67.4
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGAD 113 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d 113 (420)
+..++.+-++.+...|+.++|+ +. .+.++.+++...+|++.-+|..-++...-.++ +.+.++.+.+.|++
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~--~~------~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~--~~~~~~~a~~aGad 94 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRA--NG------VEDIRAIRARVDLPIIGLIKRDYPDSEVYITP--TIEEVDALAAAGAD 94 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEc--CC------HHHHHHHHHhCCCCEEEEEecCCCCCCceeCC--CHHHHHHHHHcCCC
Confidence 3444555556667789999885 22 23566666557899987666433322111121 34567888889999
Q ss_pred EEEEEccc---cc-chhHHHh-hcCCC-CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 114 YIDVELQV---AR-EFNDSIR-GKKPE-KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 114 ~iDiEl~~---~~-~~~~~l~-~~~~~-~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
+|=+.... +. +...++. ..++. ...++...| || ++ ..++.+.|+|++++
T Consensus 95 ~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~----t~--~e----a~~a~~~G~d~i~~ 149 (219)
T cd04729 95 IIALDATDRPRPDGETLAELIKRIHEEYNCLLMADIS----TL--EE----ALNAAKLGFDIIGT 149 (219)
T ss_pred EEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECC----CH--HH----HHHHHHcCCCEEEc
Confidence 88775432 11 1222222 11222 467777655 22 33 25566789999875
No 131
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.61 E-value=8 Score=42.12 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHhhhhcCCCEEEE----EecC-C--CCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 33 ESVDKMVVDMGKANASGADLVEI----RLDG-L--KNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 33 ~~~~e~~~~~~~~~~~~~D~vEl----RlD~-l--~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
=+.+|.+.-++...+.|.+.+|. ..|- + ...++.+.++.+++.. +.|+-.-+|..+==|..+..++-..+.+
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v 103 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV 103 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence 34455555555555679999999 3552 2 1225566777776543 5676555674333333344566677789
Q ss_pred HHHHHhCCcEEEEEccccc--chhHHHhhcCCCCcEE--EEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--
Q 014691 105 RLAMELGADYIDVELQVAR--EFNDSIRGKKPEKCKV--IVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA-- 176 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl~~~~--~~~~~l~~~~~~~~ki--I~S~H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~-- 176 (420)
+.+.+.|++++-|-...++ .....+...+..+..+ -++|-. .| +.+.+.+..+++.+.|||.+-|+=|.
T Consensus 104 ~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~---~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~ 180 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT---SPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGL 180 (593)
T ss_pred HHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee---CCccCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 9999999999888644332 1222222233334443 234421 33 35678899999999999999998776
Q ss_pred CCHHHHHHHHHHhcc-CCCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 177 LDITDVARVFQITVH-SQVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 177 ~s~~D~~~ll~~~~~-~~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
-++.++.++.+.++. .+.|+=.. +.--++..+=+.+---|....=+++..- .-..||++++++...++
T Consensus 181 l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~gl-G~~~Gn~~le~vv~~L~ 251 (593)
T PRK14040 181 LKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSM-SMTYGHSATETLVATLE 251 (593)
T ss_pred cCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccc-cccccchhHHHHHHHHH
Confidence 468899888877654 35565433 3333344444444444544433444321 12358888777766655
No 132
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.59 E-value=0.97 Score=44.22 Aligned_cols=90 Identities=21% Similarity=0.248 Sum_probs=64.6
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC-------Cc---hhHHHHHHhhCCCcEEEEeccCCCCC
Q 014691 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF-------NP---RENIKTLIKESPVPTLFTYRPIWEGG 91 (420)
Q Consensus 22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-------~~---~~~l~~l~~~~~~PiI~T~R~~~eGG 91 (420)
+.| +.+.|.+.+.++..+.++.+...|+|+||+=+-+-... ++ .+.++.+++..+.|+++-+|..
T Consensus 98 ~~p-vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---- 172 (289)
T cd02810 98 GQP-LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---- 172 (289)
T ss_pred CCe-EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----
Confidence 344 56789999999999988888888999999987642210 11 1234444445588999888852
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691 92 QYDGDENERVDVLRLAMELGADYIDVEL 119 (420)
Q Consensus 92 ~~~~~~~~~~~ll~~~~~~~~d~iDiEl 119 (420)
.++++..++.+.+.+.|+|+|.+--
T Consensus 173 ---~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 173 ---FDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred ---CCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2455677888888899999999853
No 133
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.54 E-value=0.11 Score=52.18 Aligned_cols=40 Identities=35% Similarity=0.448 Sum_probs=36.1
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
..+.||++.|||.|.+|++++..|..+|++|.+++|+...
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~ 185 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP 185 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 4678999999999999999999999999999999997543
No 134
>PLN02928 oxidoreductase family protein
Probab=93.53 E-value=0.11 Score=52.63 Aligned_cols=37 Identities=27% Similarity=0.517 Sum_probs=34.5
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+.||++.|||.|.+|++++..|..+|++|+.++|+.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~ 192 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSW 192 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC
Confidence 5789999999999999999999999999999999973
No 135
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.53 E-value=0.41 Score=47.11 Aligned_cols=119 Identities=18% Similarity=0.295 Sum_probs=75.6
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG-- 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g-- 345 (420)
....+++|++.....++- +++.+.++.+ .+++..|+-|-+|.... +|+ -+.+.+++--.=- ||
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~----i~~----~~i~~~I~p~KDV--DGl~ 123 (284)
T PRK14190 54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKH----IDE----KAVIERISPEKDV--DGFH 123 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----HHHHhcCCccccc--cccC
Confidence 457899999987766654 2677777777 46789999999997532 221 1111122211100 11
Q ss_pred -----eEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 346 -----KLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 346 -----~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
+++ |. -.--.|++.-|+.. +.+++||+|+|||.+. +||-++.-|.+.|+.|+++..
T Consensus 124 ~~n~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs 190 (284)
T PRK14190 124 PINVGRMMLGQDTFLPCTPHGILELLKEY-----------NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS 190 (284)
T ss_pred HhhHHHHhcCCCCCCCCCHHHHHHHHHHc-----------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC
Confidence 111 10 01134555555442 2678999999999877 999999999999999998864
No 136
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.52 E-value=0.26 Score=48.36 Aligned_cols=134 Identities=19% Similarity=0.310 Sum_probs=81.7
Q ss_pred eeecc-CccccccHHHHHHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHH
Q 014691 257 GIIGK-PVGHSKSPILYNEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330 (420)
Q Consensus 257 ~v~G~-pv~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~ 330 (420)
-++|+ |-+++.--.. ....+++|++.....++. +++.+.++.+ .++...|+-|-+|.... +|+ -+
T Consensus 36 i~vg~d~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~----i~~----~~ 106 (282)
T PRK14166 36 ILVGDNPASQTYVKSK-AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDH----ICK----DL 106 (282)
T ss_pred EEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH----HH
Confidence 34553 3333333333 346788999987666653 3576777777 46789999999997532 221 11
Q ss_pred HhcceeEEEEeccC-------CeE-EEEe-----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHH
Q 014691 331 SIGAVNCIIRRQSD-------GKL-FGYN-----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKAL 396 (420)
Q Consensus 331 ~iGAvNTi~~~~~~-------g~l-~G~N-----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~ 396 (420)
.+.+++.-.=- | |++ .|.+ .--.|++.-|+.. +.+++||+|+|+|-+. +||-+
T Consensus 107 i~~~I~p~KDV--DGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y-----------~i~l~Gk~vvVvGrS~iVGkPl 173 (282)
T PRK14166 107 ILESIISSKDV--DGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAY-----------EIDLEGKDAVIIGASNIVGRPM 173 (282)
T ss_pred HHhccCcccCc--ccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHH
Confidence 12222222100 1 111 1211 1145556555543 2578999999999877 99999
Q ss_pred HHHHHhCCCeEEEEeC
Q 014691 397 AYGAKAKGARVVIANR 412 (420)
Q Consensus 397 ~~aL~~~g~~i~v~nR 412 (420)
+.-|.+.|+.|+++.+
T Consensus 174 a~lL~~~~atVt~chs 189 (282)
T PRK14166 174 ATMLLNAGATVSVCHI 189 (282)
T ss_pred HHHHHHCCCEEEEeCC
Confidence 9999999999998875
No 137
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.44 E-value=0.089 Score=56.95 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=32.9
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+++.+|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 4568899999999999999999999999 99999864
No 138
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=93.42 E-value=8.1 Score=39.51 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=107.2
Q ss_pred HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEE-EEEccccc------chh---HHHhh-c--CC
Q 014691 68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYI-DVELQVAR------EFN---DSIRG-K--KP 134 (420)
Q Consensus 68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~i-DiEl~~~~------~~~---~~l~~-~--~~ 134 (420)
-+++++...+.|++.|.=+. ++|. +.++..+++...+.-|+|.| |.|..-.. +.. ..... . +-
T Consensus 120 g~R~~~gv~~rPli~Ti~kp-~~gl---d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~T 195 (367)
T cd08205 120 GLRRLLGVHDRPLLGTIIKP-SIGL---SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEET 195 (367)
T ss_pred hHHHHhCCCCCCeeeeeeCC-CCCC---CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhh
Confidence 34445455588999996653 3454 77888889999999899998 66653321 111 11111 1 11
Q ss_pred CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecC------------
Q 014691 135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG------------ 202 (420)
Q Consensus 135 ~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG------------ 202 (420)
++.++++..- |-+.+|+.+..+.+++.|||.+=+.....-......+.+ +.+.|+.+.--+
T Consensus 196 G~~~~y~~ni----t~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~---~~~lpi~~H~a~~ga~~~~~~~g~ 268 (367)
T cd08205 196 GRKTLYAPNI----TGDPDELRRRADRAVEAGANALLINPNLVGLDALRALAE---DPDLPIMAHPAFAGALSRSPDYGS 268 (367)
T ss_pred CCcceEEEEc----CCCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHh---cCCCeEEEccCcccccccCCCCcC
Confidence 3444443322 334589999999999999999888888766655544433 235556554333
Q ss_pred ---CcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc--cccCCCceEEeeeccCccccccHHHHHHHHH
Q 014691 203 ---ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF--RQMGPDTKVFGIIGKPVGHSKSPILYNEAFK 277 (420)
Q Consensus 203 ---~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~--~~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~ 277 (420)
.+|++.|+.+ ...+.|.+.... -+ .+.+++.++.+. ..+..-...+-+.+. ...|......++
T Consensus 269 ~~~~~~kl~RlaG---ad~~~~~~~~gk---~~--~~~~~~~~la~~~~~~~~~iK~~~Pv~sg----G~~~~~v~~l~~ 336 (367)
T cd08205 269 HFLLLGKLMRLAG---ADAVIFPGPGGR---FP--FSREECLAIARACRRPLGGIKPALPVPSG----GMHPGRVPELYR 336 (367)
T ss_pred CHHHHHHHHHHcC---CCccccCCCccC---cC--CCHHHHHHHHHHHhCccccCCCceeeccC----CCCHHHHHHHHH
Confidence 3455666654 133333332210 11 344455555442 111111112222221 255666677777
Q ss_pred HcCCCceee
Q 014691 278 SVGFNGVFV 286 (420)
Q Consensus 278 ~~gl~~~y~ 286 (420)
.+|-|..+.
T Consensus 337 ~~G~dv~~~ 345 (367)
T cd08205 337 DYGPDVILL 345 (367)
T ss_pred HhCCcEEEE
Confidence 888554443
No 139
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.32 E-value=0.15 Score=51.40 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=36.2
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
..+.|+++.|||.|.+|++++..|..+|++|+.++|+.+.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~ 181 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNK 181 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence 3578999999999999999999999999999999998654
No 140
>PRK07411 hypothetical protein; Validated
Probab=93.32 E-value=0.093 Score=54.02 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=32.3
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
++..+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456799999999999999999999999 99999875
No 141
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=93.30 E-value=2 Score=44.73 Aligned_cols=134 Identities=17% Similarity=0.168 Sum_probs=79.2
Q ss_pred CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCc-EEEEeccCCCCCCCCCCHHHHH
Q 014691 23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVP-TLFTYRPIWEGGQYDGDENERV 101 (420)
Q Consensus 23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~ 101 (420)
.|++++.+-..++++.++.++.+.+.|+|++|.-..... ....+.++.+.+....+ ++..+|....| ..
T Consensus 3 ~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~-~~~~~~i~~l~~~~~~~~ii~D~kl~d~g-------~~-- 72 (430)
T PRK07028 3 RPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIK-SEGMNAIRTLRKNFPDHTIVADMKTMDTG-------AI-- 72 (430)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhhHHHHHHHHHHCCCCEEEEEeeeccch-------HH--
Confidence 678889999999999999999988899999996321110 01123466665554444 55567754332 12
Q ss_pred HHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691 102 DVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA 173 (420)
Q Consensus 102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia 173 (420)
.++.+.+.|+++|-+-...++....... ..++.+.+++.-.. .+++. .+.++.+.+.|+|++++-
T Consensus 73 -~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~---s~~t~---~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 -EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLI---NVPDP---VKRAVELEELGVDYINVH 138 (430)
T ss_pred -HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEec---CCCCH---HHHHHHHHhcCCCEEEEE
Confidence 4556788899998864322211111121 22234667765211 11111 223566667899999875
No 142
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=93.17 E-value=0.15 Score=52.78 Aligned_cols=40 Identities=35% Similarity=0.520 Sum_probs=35.3
Q ss_pred ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
.+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l 215 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKI 215 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 467899999997 8899999999999999999999987654
No 143
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=93.11 E-value=2.3 Score=38.97 Aligned_cols=106 Identities=27% Similarity=0.386 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCch---hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691 36 DKMVVDMGKANASGADLVEIRLDGLKNFNPR---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA 112 (420)
Q Consensus 36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~ 112 (420)
++....++.+.+.|+++|.+|.=.+.+.+-. ..+..+.+..+.|+++.- + .+.+.+.|+
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~---------------~---~~la~~~g~ 74 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVND---------------R---VDLALALGA 74 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC---------------H---HHHHHHcCC
Confidence 3466777778889999999996433321111 122333344578888852 1 235566788
Q ss_pred cEEEEEcc-cccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 113 DYIDVELQ-VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 113 d~iDiEl~-~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
+-|=+... ...+..+.+ ...+..|-+|.|+. +|+ .++.+.|+|++++
T Consensus 75 ~GvHl~~~~~~~~~~r~~---~~~~~~ig~s~h~~------~e~----~~a~~~g~dyi~~ 122 (196)
T TIGR00693 75 DGVHLGQDDLPASEARAL---LGPDKIIGVSTHNL------EEL----AEAEAEGADYIGF 122 (196)
T ss_pred CEEecCcccCCHHHHHHh---cCCCCEEEEeCCCH------HHH----HHHhHcCCCEEEE
Confidence 76655322 222222222 23456888999953 333 3455689999997
No 144
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.10 E-value=0.75 Score=45.25 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=75.9
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
....+++|++.....++- +++.+.++.+ .++.+.|+-|-+|... ++|+ -+.+.+++.-.=- |
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~----~id~----~~i~~~I~p~KDV--DGl~ 123 (284)
T PRK14193 54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPK----HLDE----NAVLERIDPAKDA--DGLH 123 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhcCCcccCc--cCCC
Confidence 446889999987666553 3566677777 4677999999999752 2221 1122233222100 1
Q ss_pred ----CeEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHh--CCCeEEEEeC
Q 014691 345 ----GKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA--KGARVVIANR 412 (420)
Q Consensus 345 ----g~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~--~g~~i~v~nR 412 (420)
|+++ |. -.--.|++.-|+.. +.+++||+++|||.+. +|+-++.-|.+ .++.|+++..
T Consensus 124 ~~n~g~l~~~~~~~~PcTp~av~~ll~~~-----------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs 192 (284)
T PRK14193 124 PTNLGRLVLNEPAPLPCTPRGIVHLLRRY-----------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHT 192 (284)
T ss_pred hhhhhHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCC
Confidence 1111 11 11245556655543 2678999999999877 99999998887 6889998884
No 145
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.08 E-value=2.9 Score=38.41 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=63.8
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---CCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---LKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV 101 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~---l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 101 (420)
|.++|..-|..++.++++.+.+.|+|++++|.=- .+.... .+.++.+++..+.|+.+.+-.. +.+.
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~--------d~~~-- 71 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVE--------NPER-- 71 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeC--------CHHH--
Confidence 5677888999999999999989999999998521 221111 2345566544445664443321 2222
Q ss_pred HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEccc
Q 014691 102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHN 145 (420)
Q Consensus 102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~ 145 (420)
.++.+.+.|+|+|=|=....+.....+...+..+.+++++.|.
T Consensus 72 -~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~ 114 (211)
T cd00429 72 -YIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNP 114 (211)
T ss_pred -HHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecC
Confidence 3556668889986442222122222222223457788888763
No 146
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.04 E-value=0.5 Score=46.78 Aligned_cols=124 Identities=18% Similarity=0.263 Sum_probs=76.0
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g 345 (420)
...++++|++.....++. +++...++.+ .++...|+-|-+|....+ ...++.+++. +.+-..+..- -|
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 127 (297)
T PRK14167 53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA-KDVDGFHPEN----VG 127 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----hH
Confidence 457899999987766654 2577777777 567899999999975321 1111111110 1111111110 01
Q ss_pred eEE-EEe----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhC----CCeEEEEeC
Q 014691 346 KLF-GYN----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVIANR 412 (420)
Q Consensus 346 ~l~-G~N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~----g~~i~v~nR 412 (420)
+++ |.+ .--.|++.-|+.. +.+++||+|+|||.+. +||-++.-|.+. ++.|+++..
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs 193 (297)
T PRK14167 128 RLVAGDARFKPCTPHGIQKLLAAA-----------GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHS 193 (297)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCC
Confidence 111 111 1245556655543 2578999999999877 999999988877 678888853
No 147
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.03 E-value=0.56 Score=46.19 Aligned_cols=119 Identities=21% Similarity=0.295 Sum_probs=76.8
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeE
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL 347 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l 347 (420)
....+++|++.....++. +++.+.++.+ .++...|+-|-.|+-. ++|+ . +.+.+++.-.=- || +
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~----~id~---~-~i~~~I~p~KDV--DG-l 121 (286)
T PRK14184 53 ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPK----GLDS---Q-RCLELIDPAKDV--DG-F 121 (286)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCC----CCCH---H-HHHhccCcccCc--cc-C
Confidence 346899999987766653 3577777777 4678999999999743 2332 1 122222222100 11 1
Q ss_pred EEEe-------------cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHh----CCCeEEE
Q 014691 348 FGYN-------------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA----KGARVVI 409 (420)
Q Consensus 348 ~G~N-------------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~----~g~~i~v 409 (420)
+-+| .--.|++.-|+.. +.+++||+++|+|.+. +|+-++.-|.+ .++.|++
T Consensus 122 ~~~N~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~ 190 (286)
T PRK14184 122 HPENMGRLALGLPGFRPCTPAGVMTLLERY-----------GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTV 190 (286)
T ss_pred CHhhHHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEE
Confidence 1111 1234566655543 2678999999999877 99999999988 7888888
Q ss_pred EeCC
Q 014691 410 ANRT 413 (420)
Q Consensus 410 ~nR~ 413 (420)
+..+
T Consensus 191 ~hs~ 194 (286)
T PRK14184 191 CHSR 194 (286)
T ss_pred EeCC
Confidence 8654
No 148
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.02 E-value=0.12 Score=59.26 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=32.2
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+++|+|||+|.+|.++|+.|+..|.+|+|+.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 46899999999999999999999999999998753
No 149
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.02 E-value=8.3 Score=38.89 Aligned_cols=198 Identities=14% Similarity=0.134 Sum_probs=110.1
Q ss_pred HHHHHHHHhhhhcCCCEEEE---------EecC-CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 36 DKMVVDMGKANASGADLVEI---------RLDG-LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 36 ~e~~~~~~~~~~~~~D~vEl---------RlD~-l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
++.+.-++...+.|+|.||+ -+++ +....+.+.++.+++.. +..+..-++. |.. . .+-+
T Consensus 24 ~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~p----g~~--~----~~dl 93 (333)
T TIGR03217 24 EQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLP----GIG--T----VHDL 93 (333)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEecc----Ccc--C----HHHH
Confidence 34444444445679999999 3333 33333445566665433 2333322332 211 1 2346
Q ss_pred HHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCHH
Q 014691 105 RLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDIT 180 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~~ 180 (420)
+.+.+.|++.|-|=....+ +...+.. ..+..+..+.++.-+-... +.+++.+..+.+.++|||.+=|+=+. -+++
T Consensus 94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~ 172 (333)
T TIGR03217 94 KAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMT-PPEKLAEQAKLMESYGADCVYIVDSAGAMLPD 172 (333)
T ss_pred HHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHHHHHhcCCCEEEEccCCCCCCHH
Confidence 8888999999887654433 2222222 2344566766554432222 45789999999999999999888555 4689
Q ss_pred HHHHHHHHhccC-C--CCEEEEecCCcc--hhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 181 DVARVFQITVHS-Q--VPIIGLVMGERG--LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 181 D~~~ll~~~~~~-~--~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
|+.++.+.+... + +|+=..+=-.+| ...=+..-.-|....=+++.. -....|+.+++++...++
T Consensus 173 ~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G-~G~~aGN~~~E~lv~~l~ 241 (333)
T TIGR03217 173 DVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRG-LGAGAGNAPLEVFVAVLD 241 (333)
T ss_pred HHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeeccc-ccccccCccHHHHHHHHH
Confidence 999988876543 2 555433322222 222222222343333334332 124688888888765554
No 150
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=93.01 E-value=1.7 Score=40.68 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCC-CCCch-hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH---HHHHHH
Q 014691 32 GESVDKMVVDMGKANASGADLVEIRLDGLK-NFNPR-ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER---VDVLRL 106 (420)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~~ 106 (420)
..+++++. .+.+.|||-|||.-++-. .+.|. ..++.+++..++|+-+-+|.+ ||-|-.++++. .+-++.
T Consensus 7 v~s~~~a~----~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr--~gdF~Ys~~E~~~M~~dI~~ 80 (201)
T PF03932_consen 7 VESLEDAL----AAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPR--GGDFVYSDEEIEIMKEDIRM 80 (201)
T ss_dssp ESSHHHHH----HHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SS--SS-S---HHHHHHHHHHHHH
T ss_pred eCCHHHHH----HHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCC--CCCccCCHHHHHHHHHHHHH
Confidence 45555554 445779999999998643 33442 346666677899999999954 45566666443 344566
Q ss_pred HHHhCCcEEEEEc-----ccccchhHHHhhcCCCCcEEEEEccc-CCCCCCHHHHHHHHHHHHHcCCC
Q 014691 107 AMELGADYIDVEL-----QVAREFNDSIRGKKPEKCKVIVSSHN-YQYTPSVEDLSNLVARIQASGAD 168 (420)
Q Consensus 107 ~~~~~~d~iDiEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tP~~~el~~~~~~~~~~gaD 168 (420)
+.++|+|-+=+=. ..+.+..+.+... .++..+.. |- |+.+++. .+-++++.++|.+
T Consensus 81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~-a~~~~~tF--HRAfD~~~d~---~~al~~L~~lG~~ 142 (201)
T PF03932_consen 81 LRELGADGFVFGALTEDGEIDEEALEELIEA-AGGMPVTF--HRAFDEVPDP---EEALEQLIELGFD 142 (201)
T ss_dssp HHHTT-SEEEE--BETTSSB-HHHHHHHHHH-HTTSEEEE---GGGGGSSTH---HHHHHHHHHHT-S
T ss_pred HHHcCCCeeEEEeECCCCCcCHHHHHHHHHh-cCCCeEEE--eCcHHHhCCH---HHHHHHHHhcCCC
Confidence 6778888765532 3344556666643 24666665 64 9999874 4456667677855
No 151
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=92.93 E-value=0.11 Score=49.53 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=31.5
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
++..+|+|+|.||+|.-++-+|+.-|+ +|++++-+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence 566799999999999999999999999 99998753
No 152
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.91 E-value=0.13 Score=55.30 Aligned_cols=35 Identities=37% Similarity=0.463 Sum_probs=32.2
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..|++|+|||+|.+|.++++.|...|++|+|+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46899999999999999999999999999999864
No 153
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=92.82 E-value=15 Score=38.86 Aligned_cols=208 Identities=15% Similarity=0.140 Sum_probs=125.0
Q ss_pred HHHHHHHHHhhhhcCCCEEEE----EecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 014691 35 VDKMVVDMGKANASGADLVEI----RLDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRL 106 (420)
Q Consensus 35 ~~e~~~~~~~~~~~~~D~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 106 (420)
.++++.-+...-..|.+.+|. ..|- +...+|.+.|+.+++.. +.|+-.=+|..+==|..+-+++-...+++.
T Consensus 34 t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~ 113 (468)
T PRK12581 34 IEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISL 113 (468)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHH
Confidence 344444444444569999999 8882 23336677788777654 456655577332224444455555667899
Q ss_pred HHHhCCcEEEEEcccc--cchhHHHhhcCCCCcE--EEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CC
Q 014691 107 AMELGADYIDVELQVA--REFNDSIRGKKPEKCK--VIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LD 178 (420)
Q Consensus 107 ~~~~~~d~iDiEl~~~--~~~~~~l~~~~~~~~k--iI~S~H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s 178 (420)
+.+.|+|.+=|=-.+. +.....+...++.|.. +-++|- ..| +.+-+.+..+++.+.|||.+=|+=|+ -+
T Consensus 114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt---~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~ 190 (468)
T PRK12581 114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYT---TSPVHTLNYYLSLVKELVEMGADSICIKDMAGILT 190 (468)
T ss_pred HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEE---eCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence 9999988776622222 1111222222233333 344442 245 45668889999999999999888776 46
Q ss_pred HHHHHHHHHHhccC-CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 179 ITDVARVFQITVHS-QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 179 ~~D~~~ll~~~~~~-~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
+.++.++.+.++.. +.|+-.. +.--++..+=+..-.-|....=+++..- +...||++.+++...++-
T Consensus 191 P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~-g~gagN~~tE~lv~~L~~ 260 (468)
T PRK12581 191 PKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPF-SEGTSQPATESMYLALKE 260 (468)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeecccc-CCCcCChhHHHHHHHHHh
Confidence 88998888876543 5665433 4444444444544455554444555431 223579999988877663
No 154
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.80 E-value=6.3 Score=38.31 Aligned_cols=194 Identities=18% Similarity=0.130 Sum_probs=112.1
Q ss_pred HHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHHhhCCCcEEEE-eccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691 35 VDKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLIKESPVPTLFT-YRPIWEGGQYDGDENERVDVLRLAMELG 111 (420)
Q Consensus 35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~T-~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 111 (420)
.++.++-++...+.|+|.||.=- +...+ .+.++.+.+....+-+++ .|.. . +=++.+.+.|
T Consensus 21 ~~~k~~i~~~L~~~Gv~~IEvG~---P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~---------~----~di~~a~~~g 84 (262)
T cd07948 21 TEDKIEIAKALDAFGVDYIELTS---PAASPQSRADCEAIAKLGLKAKILTHIRCH---------M----DDARIAVETG 84 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEC---CCCCHHHHHHHHHHHhCCCCCcEEEEecCC---------H----HHHHHHHHcC
Confidence 34444445555677999999963 32222 223334433222244444 3421 1 1256677889
Q ss_pred CcEEEEEccccc------------chhHHH----hhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 014691 112 ADYIDVELQVAR------------EFNDSI----RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT 175 (420)
Q Consensus 112 ~d~iDiEl~~~~------------~~~~~l----~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~ 175 (420)
++.|.+-+..++ +.++.+ ..++..+.+|-++.-+-..+| .+++.+.++++.+.|+|.+-++=+
T Consensus 85 ~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~Dt 163 (262)
T cd07948 85 VDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVGIADT 163 (262)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEECCc
Confidence 999998654321 222222 223456778888876644555 567999999999999998877754
Q ss_pred c--CCHHHHHHHHHHhccC-CCCEEEEe--cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 176 A--LDITDVARVFQITVHS-QVPIIGLV--MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 176 ~--~s~~D~~~ll~~~~~~-~~p~I~~~--MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
. -+++++.++++.+++. +.|+-..+ .--+|...=+..-..|..+.=+++.. -.-..|..+++++...++.
T Consensus 164 ~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~G-lGeraGn~~~e~~~~~l~~ 238 (262)
T cd07948 164 VGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLG-IGERNGITPLGGLIARMYT 238 (262)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccc-cccccCCccHHHHHHHHHh
Confidence 4 5789998888876543 55654433 22233333333334454333233332 1135899999888877654
No 155
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.74 E-value=0.53 Score=46.59 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=75.9
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g 345 (420)
....+++|++..-..++. +++.+.++.+ .++...|+-|-.|.-..+ ...++.+++. +.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (297)
T PRK14186 54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD-KDADGLHPLN----LG 128 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----HH
Confidence 446889999986555542 3677777777 467799999999974322 1111111110 1111111110 01
Q ss_pred eE-EEE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 346 KL-FGY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 346 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
++ .|. -.--.|++.-|+.. +.+++||+|+|||.+. +|+-++.-|.+.|+.|+++..
T Consensus 129 ~l~~~~~~~~PcTp~aii~lL~~~-----------~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs 190 (297)
T PRK14186 129 RLVKGEPGLRSCTPAGVMRLLRSQ-----------QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHS 190 (297)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence 11 111 11245666665543 2678999999999877 999999999999999988863
No 156
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.72 E-value=0.13 Score=58.64 Aligned_cols=36 Identities=39% Similarity=0.379 Sum_probs=33.0
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+|+|+|||+|.+|.++|+.|+..|.+|+|+.+..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 468999999999999999999999999999998753
No 157
>PRK06484 short chain dehydrogenase; Validated
Probab=92.66 E-value=0.16 Score=53.74 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=36.6
Q ss_pred ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
...||.++|.|+ ||.|++++..|.+.|++|++++|+.++.++
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~ 308 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKK 308 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 347899999996 789999999999999999999999876543
No 158
>PRK12831 putative oxidoreductase; Provisional
Probab=92.64 E-value=0.16 Score=53.37 Aligned_cols=36 Identities=33% Similarity=0.303 Sum_probs=32.8
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
-.+++++|||+|.+|-++++.|..+|.+|+|+.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 468999999999999999999999999999998753
No 159
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.63 E-value=0.15 Score=55.77 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=32.8
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+|+|+|||+|.+|.++++.|...|.+|+|+.|..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 58999999999999999999999999999999875
No 160
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.57 E-value=0.32 Score=50.78 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEE
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA 410 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~ 410 (420)
++|.+.+++..+... +.+++|++|+|.|.|-+|..++..|.+.|++|+.+
T Consensus 208 g~Gv~~~~~~~~~~~-------g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaV 257 (444)
T PRK14031 208 GYGNIYFLMEMLKTK-------GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTM 257 (444)
T ss_pred HHHHHHHHHHHHHhc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 788888887776532 35789999999999999999999999999976653
No 161
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=92.53 E-value=3 Score=41.08 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=84.9
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCC----CCCchhHHHHHH-------hhCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLK----NFNPRENIKTLI-------KESPVPTLFTYRPIWEGGQYDGDENERVD 102 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~-------~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ 102 (420)
+.+++++++.+..+.|||+|.+=--.-. ..++.++++++. +..+.| +.+-| .+.+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~--ISIDT------------~~~~ 101 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW--ISVDT------------SKPE 101 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe--EEEEC------------CCHH
Confidence 6788999999988999999988743321 122233433322 222333 45553 2346
Q ss_pred HHHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCH---------------HHHHHHHHHHHHcC
Q 014691 103 VLRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV---------------EDLSNLVARIQASG 166 (420)
Q Consensus 103 ll~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~---------------~el~~~~~~~~~~g 166 (420)
..+.|++.|+++| ||---..++..+.+. +.+..+|+- |. .++|.. +.+.+.++.+.+.|
T Consensus 102 va~~AL~~GadiINDI~g~~d~~~~~~~a---~~~~~vVlm-h~-~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~G 176 (282)
T PRK11613 102 VIRESAKAGAHIINDIRSLSEPGALEAAA---ETGLPVCLM-HM-QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAG 176 (282)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHHH---HcCCCEEEE-cC-CCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 8889999999998 673322333343332 246677766 43 233321 24556677787888
Q ss_pred CCEEEEEe-----ecCCHHHHHHHHHHhcc---CCCCE
Q 014691 167 ADIVKFAT-----TALDITDVARVFQITVH---SQVPI 196 (420)
Q Consensus 167 aDivKia~-----~~~s~~D~~~ll~~~~~---~~~p~ 196 (420)
.+==+|.. ..++.++++.+++-+.. .+.|+
T Consensus 177 I~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pi 214 (282)
T PRK11613 177 IAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPL 214 (282)
T ss_pred CChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 54235554 34688899888876443 45674
No 162
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.51 E-value=0.22 Score=50.07 Aligned_cols=39 Identities=44% Similarity=0.614 Sum_probs=35.9
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.|++|+|+|+||.|-.++..++.+|++|+.++|+++|.+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e 204 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLE 204 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHH
Confidence 488999999999999999988889999999999999875
No 163
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.47 E-value=0.9 Score=46.06 Aligned_cols=119 Identities=26% Similarity=0.328 Sum_probs=76.0
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
....+++|++..-..++- +++.+.++.+ .++...|+-|-.|... ++|+ -+.+.+++.-.=- |
T Consensus 125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~----~id~----~~i~~aI~P~KDV--DGl~ 194 (364)
T PLN02616 125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPS----HMDE----QNILNAVSIEKDV--DGFH 194 (364)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccCc--ccCC
Confidence 357889999875444432 2677777777 4677999999999853 2222 1122222222110 1
Q ss_pred ----CeEE-EE-e-----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 345 ----GKLF-GY-N-----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 345 ----g~l~-G~-N-----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
|++. |. + .--.|++.-|+.. +.+++||+|+|||-+. +|+-++.-|.+.|+.|+++..
T Consensus 195 p~N~G~L~~g~~~~~f~PCTp~avielL~~y-----------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs 263 (364)
T PLN02616 195 PLNIGRLAMRGREPLFVPCTPKGCIELLHRY-----------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS 263 (364)
T ss_pred hhhhHHHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCC
Confidence 1221 11 1 1145666666543 2678999999999877 999999999999999998874
No 164
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=92.46 E-value=0.62 Score=46.14 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=76.0
Q ss_pred HHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~--~--~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
....+++|++..-..++ + +++.+.++.+ .++++.|+-|-.|.-. ++|+ -+.+.+++.-.=- |
T Consensus 61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~----~id~----~~i~~~I~p~KDV--DGl~ 130 (299)
T PLN02516 61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPK----HINE----EKILNEISLEKDV--DGFH 130 (299)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CcCH----HHHHhccCccccc--CccC
Confidence 34688999997655554 2 3677777777 5678999999999642 2222 1122222222100 1
Q ss_pred ----CeEE-EE------ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 345 ----GKLF-GY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 345 ----g~l~-G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
|++. |. -.--.|++.-|+.. +.+++||+|+|||-+. +||-++.-|.+.|+.|++++.
T Consensus 131 ~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs 199 (299)
T PLN02516 131 PLNIGKLAMKGREPLFLPCTPKGCLELLSRS-----------GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHS 199 (299)
T ss_pred HhhHhhHhcCCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence 2222 11 11134555555442 2678999999999877 999999999999999999874
No 165
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.44 E-value=5.3 Score=35.97 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=61.9
Q ss_pred EEEEeecCCC----HHHHHHHHHhhhhcCCCEEEEEecCCCCCC--c---hhHHHHHHhh--CCCcEEEEeccCCCCCCC
Q 014691 25 LICVPIMGES----VDKMVVDMGKANASGADLVEIRLDGLKNFN--P---RENIKTLIKE--SPVPTLFTYRPIWEGGQY 93 (420)
Q Consensus 25 ~icv~l~~~~----~~e~~~~~~~~~~~~~D~vElRlD~l~~~~--~---~~~l~~l~~~--~~~PiI~T~R~~~eGG~~ 93 (420)
.+.+-+...+ .++..++++.+.+.|+|.+.+-..+....+ . .+.++.+.+. .++|+++..+....
T Consensus 50 ~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~---- 125 (201)
T cd00945 50 PVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL---- 125 (201)
T ss_pred eEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC----
Confidence 3445666777 899999999999999999999877653222 1 2334455555 48999988875432
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691 94 DGDENERVDVLRLAMELGADYIDVELQ 120 (420)
Q Consensus 94 ~~~~~~~~~ll~~~~~~~~d~iDiEl~ 120 (420)
.+.+.-.++.+.+...|+++|..-..
T Consensus 126 -~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 126 -KTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred -CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 34455555555566678999887654
No 166
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=92.40 E-value=0.18 Score=53.11 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=32.8
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+++|+|||+|.+|.++++.|...|.+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 357899999999999999999999999999999864
No 167
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.39 E-value=0.22 Score=48.66 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=33.9
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+++|++||.|+ ||.|++++..|++.|++|++++|+.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4577899999996 7799999999999999999999875
No 168
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.37 E-value=0.37 Score=45.87 Aligned_cols=52 Identities=27% Similarity=0.341 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeC
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANR 412 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR 412 (420)
++|...+++..+... ..++++++++|.|.|.+|+.++..|.+.|++|+ |.+.
T Consensus 11 g~Gv~~~~~~~~~~~-------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 11 GRGVAYATREALKKL-------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred hHHHHHHHHHHHHhc-------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 678877777665421 246789999999999999999999999999765 7776
No 169
>PLN02852 ferredoxin-NADP+ reductase
Probab=92.35 E-value=0.17 Score=53.60 Aligned_cols=36 Identities=33% Similarity=0.258 Sum_probs=32.0
Q ss_pred cCCCEEEEEccchHHHHHHHHHHh--CCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKA--KGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~--~g~~i~v~nR~~ 414 (420)
..+++|+|||+|.+|-.+++.|.+ .|++|+|+.|.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 357899999999999999999986 688999999875
No 170
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=92.26 E-value=0.21 Score=55.16 Aligned_cols=42 Identities=36% Similarity=0.526 Sum_probs=37.1
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
..+++|++||.|+ ||.|++++..|.+.|++|.+++|+.++++
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~ 452 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAE 452 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4578999999996 88999999999999999999999977654
No 171
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.26 E-value=0.19 Score=54.70 Aligned_cols=42 Identities=36% Similarity=0.561 Sum_probs=37.2
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~ 409 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALD 409 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 3577899999996 88999999999999999999999987754
No 172
>PRK08324 short chain dehydrogenase; Validated
Probab=92.25 E-value=0.19 Score=55.47 Aligned_cols=42 Identities=48% Similarity=0.589 Sum_probs=37.0
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
..+.||++||.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~ 460 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAE 460 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHH
Confidence 3467899999995 99999999999999999999999987654
No 173
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.21 E-value=1.1 Score=44.30 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=74.2
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
...++++|++.....++- +++.+.++.+ .++.+.|+-|-.|... ++|+. +.+.+++.-.=- |
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~----~i~~~----~i~~~I~p~KDV--DGl~ 122 (293)
T PRK14185 53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPK----HISEQ----KVIEAIDYRKDV--DGFH 122 (293)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CCCHH----HHHhccCcccCc--CCCC
Confidence 457899999986655543 3566667767 5678999999999753 22211 111222221100 1
Q ss_pred ----CeEE-EE----ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhC----CCeEEEE
Q 014691 345 ----GKLF-GY----NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVIA 410 (420)
Q Consensus 345 ----g~l~-G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~----g~~i~v~ 410 (420)
|+++ |. -.--.|++.-|+.. +.+++||+|+|||.+. +||-++.-|.+. ++.|+++
T Consensus 123 ~~N~g~l~~~~~~~~PcTp~av~~lL~~~-----------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvc 191 (293)
T PRK14185 123 PINVGRMSIGLPCFVSATPNGILELLKRY-----------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVC 191 (293)
T ss_pred HhhHHHHhCCCCCCCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEe
Confidence 1221 11 11245556655543 2678999999999877 999999988887 5789988
Q ss_pred e
Q 014691 411 N 411 (420)
Q Consensus 411 n 411 (420)
.
T Consensus 192 h 192 (293)
T PRK14185 192 H 192 (293)
T ss_pred c
Confidence 5
No 174
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=92.17 E-value=1.8 Score=41.16 Aligned_cols=144 Identities=22% Similarity=0.154 Sum_probs=85.3
Q ss_pred HHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHH-----HHHHHHHHHhC
Q 014691 37 KMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENER-----VDVLRLAMELG 111 (420)
Q Consensus 37 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~-----~~ll~~~~~~~ 111 (420)
++...++++.+.+++.|=+..-++. .....+...+..+-+.++- ..|.. .-+.+ ..-.+.+++.|
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~~------~~~~~~~~~~~~~~~vi~f--p~g~~--~~~~k~~~~~~~~ve~A~~~G 89 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYVK------PAAELLAGSGVKVGLVIGF--PFGTS--TTEPKGYDQIVAEVEEAIRLG 89 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGHH------HHHHHSTTSTSEEEEEEST--TTSSS--THHHHTCEEEHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhCCCEEEECHHHHH------HHHHHhhccccccceEEEe--CCCCC--ccccccccchHHHHHHHHHcC
Confidence 6677777777788888866555432 2333333222233333442 22322 22455 67788999999
Q ss_pred CcEEEEEccc---cc-------chhHHHh-hcCCCCcEEEEEcccCCCCCCHHH---------HHHHHHHHHHcCCCEEE
Q 014691 112 ADYIDVELQV---AR-------EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVED---------LSNLVARIQASGADIVK 171 (420)
Q Consensus 112 ~d~iDiEl~~---~~-------~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~e---------l~~~~~~~~~~gaDivK 171 (420)
+|-||+=++. .. +.+..+. ..++.+.++|+= - -|..++ +....+-+.++|||++|
T Consensus 90 Ad~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~----~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vK 164 (236)
T PF01791_consen 90 ADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-P----YLRGEEVADEKKPDLIARAARIAAELGADFVK 164 (236)
T ss_dssp -SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-E----CECHHHBSSTTHHHHHHHHHHHHHHTT-SEEE
T ss_pred CceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-E----ecCchhhcccccHHHHHHHHHHHHHhCCCEEE
Confidence 9999997765 11 1122222 235678898875 2 222223 55666666789999999
Q ss_pred EEee---cCCHHHHHHHHHHhccCCCC
Q 014691 172 FATT---ALDITDVARVFQITVHSQVP 195 (420)
Q Consensus 172 ia~~---~~s~~D~~~ll~~~~~~~~p 195 (420)
.-+. ..+.+|+..+.+.....+.|
T Consensus 165 t~tg~~~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 165 TSTGKPVGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp EE-SSSSCSHHHHHHHHHHHHHTHSST
T ss_pred ecCCccccccHHHHHHHHHHHHhcCCC
Confidence 9877 44567887777777766777
No 175
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=92.15 E-value=6.2 Score=36.76 Aligned_cols=136 Identities=16% Similarity=0.080 Sum_probs=84.1
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCC-HHHH
Q 014691 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGD-ENER 100 (420)
Q Consensus 22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~-~~~~ 100 (420)
+.+++|+.+-..|.+++++-+++.. ...|+||.=.+++..+.+ +.++.+++.. ++++-+.. .... ...+
T Consensus 2 ~~~~l~~alD~~~~~~~~~~~~~~~-~~~~~vk~g~~l~~~~G~-~~v~~ir~~~--~i~~D~k~------~di~~~~~~ 71 (215)
T PRK13813 2 KDSRIILALDVTDRERALKIAEELD-DYVDAIKVGWPLVLASGL-GIIEELKRYA--PVIADLKV------ADIPNTNRL 71 (215)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHhcc-ccCCEEEEcHHHHHhhCH-HHHHHHHhcC--CEEEEeec------cccHHHHHH
Confidence 5678999999999999999887653 347899999999876554 4566665443 55554442 1111 1222
Q ss_pred HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCC-----HHHHHHHHHHHHHcCCCEEE
Q 014691 101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPS-----VEDLSNLVARIQASGADIVK 171 (420)
Q Consensus 101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~-----~~el~~~~~~~~~~gaDivK 171 (420)
.++.+.+.|+|+|-+=.....+.+..+. ..++.+.++.+..+- . +|. .+++.....-..+.|++..|
T Consensus 72 --~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~-~-~~~~~~~~~~~~~~v~~m~~e~G~~g~~ 144 (215)
T PRK13813 72 --ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEM-S-HPGALEFIQPHADKLAKLAQEAGAFGVV 144 (215)
T ss_pred --HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeC-C-CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 2366778899999987765444333333 234556777654332 1 221 22344444555568888887
No 176
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=92.15 E-value=1.6 Score=42.27 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691 33 ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA 112 (420)
Q Consensus 33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~ 112 (420)
.+.+++.+-++++.+.++|.|=+---++.. .... ...+.++++++-...--|. ...........+.+++.|+
T Consensus 33 ~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~------~~~~-~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~v~~al~~Ga 104 (258)
T TIGR01949 33 KGLVDIRKTVNEVAEGGADAVLLHKGIVRR------GHRG-YGKDVGLIIHLSASTSLSP-DPNDKRIVTTVEDAIRMGA 104 (258)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEeCcchhhh------cccc-cCCCCcEEEEEcCCCCCCC-CCCcceeeeeHHHHHHCCC
Confidence 355666666666667778877554333221 1111 2246777766521111111 1112234456888999999
Q ss_pred cEEEEEcccc----cchhHHH---hh-cCCCCcEEEEEcc-----cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691 113 DYIDVELQVA----REFNDSI---RG-KKPEKCKVIVSSH-----NYQYTPSVEDLSNLVARIQASGADIVKFATTALDI 179 (420)
Q Consensus 113 d~iDiEl~~~----~~~~~~l---~~-~~~~~~kiI~S~H-----~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~ 179 (420)
+.||+..... .+..+.+ .. .++.+..+|+-.+ .-+ .+.+++.+..+.+.+.|||++|.-..
T Consensus 105 ~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~--~~~~~~~~~~~~a~~~GADyikt~~~---- 178 (258)
T TIGR01949 105 DAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD--RDPELVAHAARLGAELGADIVKTPYT---- 178 (258)
T ss_pred CEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc--ccHHHHHHHHHHHHHHCCCEEeccCC----
Confidence 9999987632 1233222 22 2345666766322 222 22344545456777899999997532
Q ss_pred HHHHHHHHHhccCCCCEEEE
Q 014691 180 TDVARVFQITVHSQVPIIGL 199 (420)
Q Consensus 180 ~D~~~ll~~~~~~~~p~I~~ 199 (420)
.+...+-++......|+.++
T Consensus 179 ~~~~~l~~~~~~~~iPVva~ 198 (258)
T TIGR01949 179 GDIDSFRDVVKGCPAPVVVA 198 (258)
T ss_pred CCHHHHHHHHHhCCCcEEEe
Confidence 23333334444456788664
No 177
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.13 E-value=0.27 Score=50.43 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=35.0
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+.||++.|||.|.+|+.++..|..+|++|.++++..
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~ 149 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR 149 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence 57889999999999999999999999999999999754
No 178
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=92.11 E-value=0.45 Score=46.11 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEe
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IAN 411 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~n 411 (420)
++|.+.+++..+... +.+++|++++|.|-|.+|+.++..|.++|++|+ |.+
T Consensus 18 g~Gv~~~~~~~~~~~-------~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDR-------NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 778888877766432 367899999999999999999999999999655 766
No 179
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=92.08 E-value=15 Score=37.35 Aligned_cols=193 Identities=19% Similarity=0.198 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhhhcCCCEEEEEecCCCCCC--chhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691 35 VDKMVVDMGKANASGADLVEIRLDGLKNFN--PRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG 111 (420)
Q Consensus 35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~--~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 111 (420)
.++.++-++...+.|+|.||.= ++... +.+.++.+.+.. +..+..-.|.. .+-++++.+.|
T Consensus 21 ~~~k~~ia~~L~~~Gv~~IEvG---~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~-------------~~di~~a~~~g 84 (363)
T TIGR02090 21 VEQKVEIARKLDELGVDVIEAG---FPIASEGEFEAIKKISQEGLNAEICSLARAL-------------KKDIDKAIDCG 84 (363)
T ss_pred HHHHHHHHHHHHHcCCCEEEEe---CCCCChHHHHHHHHHHhcCCCcEEEEEcccC-------------HHHHHHHHHcC
Confidence 4444444455556799999973 22111 233455554433 33344335521 12266778889
Q ss_pred CcEEEEEcccccc------------hhH----HHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 014691 112 ADYIDVELQVARE------------FND----SIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT 175 (420)
Q Consensus 112 ~d~iDiEl~~~~~------------~~~----~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~ 175 (420)
++.|.+-+..++- .++ .+..++..+.++-++.-+...+ +.+.+.+.++++.+.|+|.+-++=+
T Consensus 85 ~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~-~~~~l~~~~~~~~~~g~~~i~l~DT 163 (363)
T TIGR02090 85 VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRT-DIDFLIKVFKRAEEAGADRINIADT 163 (363)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCC-CHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9999885543211 112 1222345677888887665444 4678999999999999999888865
Q ss_pred c--CCHHHHHHHHHHhcc-CCCCEEEEecCCcch--hhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 176 A--LDITDVARVFQITVH-SQVPIIGLVMGERGL--ISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 176 ~--~s~~D~~~ll~~~~~-~~~p~I~~~MG~~G~--~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
. -+++++.++.+.+.. .+.|+=..+=-..|. ..=+.+-.-|....=+++..- .-..|+.+++++...++
T Consensus 164 ~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~Gl-GeraGN~~lE~vv~~L~ 237 (363)
T TIGR02090 164 VGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGI-GERAGNAALEEVVMALK 237 (363)
T ss_pred CCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecc-ccccccccHHHHHHHHH
Confidence 4 468899888877654 245554333333332 222223233443333344321 24689999988776655
No 180
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=92.05 E-value=1.4 Score=41.99 Aligned_cols=142 Identities=19% Similarity=0.159 Sum_probs=83.5
Q ss_pred cEEEEeecCC----CHHHH-----HHHHHhhhhcCCCEEEEEecC---CCCCCc--hhHHHHHHh---hCCCcEEEEecc
Q 014691 24 TLICVPIMGE----SVDKM-----VVDMGKANASGADLVEIRLDG---LKNFNP--RENIKTLIK---ESPVPTLFTYRP 86 (420)
Q Consensus 24 ~~icv~l~~~----~~~e~-----~~~~~~~~~~~~D~vElRlD~---l~~~~~--~~~l~~l~~---~~~~PiI~T~R~ 86 (420)
+.+|+.+..+ +.+.- ..+++.+++.|||.|.+=+++ ..+... .+.+.++.+ ...+|+|+-.-.
T Consensus 55 ~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l 134 (236)
T PF01791_consen 55 VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL 134 (236)
T ss_dssp SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE
T ss_pred cccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 4677766555 45656 688999999999999999998 332111 123444443 347888766332
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcc-------cccchhHHHhh--cCCCCcEEEEEcccCCCCCCHHHHHH
Q 014691 87 IWEGGQYDGDENERVDVLRLAMELGADYIDVELQ-------VAREFNDSIRG--KKPEKCKVIVSSHNYQYTPSVEDLSN 157 (420)
Q Consensus 87 ~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~-------~~~~~~~~l~~--~~~~~~kiI~S~H~f~~tP~~~el~~ 157 (420)
..+.-.-...++.-....+.+.++|+|+|-.+.. .+.+.+.++.. ..+++++|++| +-++.+++..
T Consensus 135 ~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~s-----GGi~~~~~~~ 209 (236)
T PF01791_consen 135 RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKAS-----GGIDAEDFLR 209 (236)
T ss_dssp CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEE-----SSSSHHHHHH
T ss_pred CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEe-----CCCChHHHHH
Confidence 2111000012233456677888899999999887 33444555543 12367778887 3445666666
Q ss_pred HHHHHH---HcCCCEE
Q 014691 158 LVARIQ---ASGADIV 170 (420)
Q Consensus 158 ~~~~~~---~~gaDiv 170 (420)
.++.+. +.|||..
T Consensus 210 ~l~~a~~~i~aGa~~~ 225 (236)
T PF01791_consen 210 TLEDALEFIEAGADRI 225 (236)
T ss_dssp SHHHHHHHHHTTHSEE
T ss_pred HHHHHHHHHHcCChhH
Confidence 666555 7887763
No 181
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.05 E-value=0.92 Score=44.80 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=57.2
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcC-CCEEEEEecCC--------CCCCc---hhHHHHHHhhCCCcEEEEeccCCCCCCC
Q 014691 26 ICVPIMGESVDKMVVDMGKANASG-ADLVEIRLDGL--------KNFNP---RENIKTLIKESPVPTLFTYRPIWEGGQY 93 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~-~D~vElRlD~l--------~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~ 93 (420)
+.+.|.+.+.++...-++.+.+.| +|.||+=+=+- ...++ .+.++.+++..+.|+.+-++.
T Consensus 94 ~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~------- 166 (301)
T PRK07259 94 IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP------- 166 (301)
T ss_pred EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------
Confidence 567999999999999888888888 99999954110 00111 123444444458899888773
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEEE
Q 014691 94 DGDENERVDVLRLAMELGADYIDV 117 (420)
Q Consensus 94 ~~~~~~~~~ll~~~~~~~~d~iDi 117 (420)
+.++..++.+.+.+.|+|+|++
T Consensus 167 --~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 --NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred --CchhHHHHHHHHHHcCCCEEEE
Confidence 1134566777888889999987
No 182
>PRK07985 oxidoreductase; Provisional
Probab=92.01 E-value=0.23 Score=48.66 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=31.9
Q ss_pred ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~ 413 (420)
.+++|+++|.|+ ||.|++++..|.+.|++|++..|+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence 467899999996 789999999999999998888765
No 183
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.97 E-value=0.27 Score=52.23 Aligned_cols=39 Identities=33% Similarity=0.244 Sum_probs=35.0
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+.+|+|+|+|.+|.+++..+..+|++|++++++.++.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle 201 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE 201 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 357999999999999999999999999999999887654
No 184
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.95 E-value=0.23 Score=52.00 Aligned_cols=37 Identities=32% Similarity=0.288 Sum_probs=33.3
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
+..+++++|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3467899999999999999999999999999999863
No 185
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.93 E-value=0.55 Score=46.48 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=77.0
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccC---
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSD--- 344 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~--- 344 (420)
...++++|++.....++. +++.+.++.+ .++...|+-|-.|... ++|+. +.+.+++.-.=- |
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id~~----~i~~~I~p~KDV--DGl~ 122 (295)
T PRK14174 53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QIDEF----AVTLAIDPAKDV--DGFH 122 (295)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCHH----HHHhcCCccccc--cccC
Confidence 457899999988777664 3677777777 5677999999999752 33321 111222222100 1
Q ss_pred ----CeEE-EE--e----cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHh----CCCeEE
Q 014691 345 ----GKLF-GY--N----TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKA----KGARVV 408 (420)
Q Consensus 345 ----g~l~-G~--N----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~----~g~~i~ 408 (420)
|+++ |+ + .--.|++.-|+.. +.+++||+|+|||.+. +||-++.-|.+ .|+.|+
T Consensus 123 ~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y-----------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt 191 (295)
T PRK14174 123 PENLGRLVMGHLDKCFVSCTPYGILELLGRY-----------NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT 191 (295)
T ss_pred hhhHHHHhcCCCCCCcCCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE
Confidence 1221 21 1 1234555555432 2578999999999887 99999988877 578888
Q ss_pred EEeCCh
Q 014691 409 IANRTY 414 (420)
Q Consensus 409 v~nR~~ 414 (420)
++..+.
T Consensus 192 ~~hs~t 197 (295)
T PRK14174 192 ICHSAT 197 (295)
T ss_pred EEeCCc
Confidence 887654
No 186
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.91 E-value=2.8 Score=39.51 Aligned_cols=119 Identities=21% Similarity=0.210 Sum_probs=73.9
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
.++..+...+.+++..-++.+.+.|.+++|+-+.. .+..+.++.+++..+- +++=.-+ . .++ +-.
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~---~~~~~~I~~l~~~~p~-~~IGAGT-----V--l~~----~~a 80 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRT---PAALEAIRLIAKEVPE-ALIGAGT-----V--LNP----EQL 80 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHHCCC-CEEEEee-----c--cCH----HHH
Confidence 35556889999999999998888899999999542 2223456666655432 2221111 1 122 346
Q ss_pred HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
+.+++.|++|+=. -..+++.++... +.+...|=... ||+ | +.++.++|+|++|+
T Consensus 81 ~~a~~aGA~Fivs-P~~~~~vi~~a~---~~~i~~iPG~~----Tpt--E----i~~a~~~Ga~~vKl 134 (212)
T PRK05718 81 AQAIEAGAQFIVS-PGLTPPLLKAAQ---EGPIPLIPGVS----TPS--E----LMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHcCCCEEEC-CCCCHHHHHHHH---HcCCCEeCCCC----CHH--H----HHHHHHCCCCEEEE
Confidence 6788899999833 444555554432 23444442221 443 2 55677899999999
No 187
>PRK05855 short chain dehydrogenase; Validated
Probab=91.86 E-value=0.23 Score=52.73 Aligned_cols=41 Identities=34% Similarity=0.499 Sum_probs=36.3
Q ss_pred ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
...++++||+|+ ||.|++++..|++.|++|.+++|+.++.+
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~ 353 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAE 353 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 456789999996 88999999999999999999999987654
No 188
>PRK06128 oxidoreductase; Provisional
Probab=91.84 E-value=0.27 Score=48.17 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=31.9
Q ss_pred ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+++|++||.|+ ||.|++++..|.+.|++|.+..|+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~ 89 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPE 89 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence 367899999996 8899999999999999888877653
No 189
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=91.83 E-value=4.1 Score=36.67 Aligned_cols=107 Identities=25% Similarity=0.318 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh---hCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691 36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK---ESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA 112 (420)
Q Consensus 36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~ 112 (420)
.++...++.+...|++.|++|.-..........++.+.+ ..+.++++. .+ ++.+.+.|+
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~---------------~~---~~~a~~~g~ 73 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN---------------DR---VDLALAVGA 73 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe---------------Ch---HHHHHHcCC
Confidence 456666777777899999999754332111122333332 235677642 12 345677899
Q ss_pred cEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 113 DYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 113 d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
+.+-++..... ...+...+..+.++-+|.| |+ ++ ..++...|+|++.+
T Consensus 74 ~~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~----t~--~~----~~~~~~~g~d~i~~ 121 (196)
T cd00564 74 DGVHLGQDDLP--VAEARALLGPDLIIGVSTH----SL--EE----ALRAEELGADYVGF 121 (196)
T ss_pred CEEecCcccCC--HHHHHHHcCCCCEEEeeCC----CH--HH----HHHHhhcCCCEEEE
Confidence 99877753221 1222222334678888877 22 23 34555679999976
No 190
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.83 E-value=0.21 Score=52.28 Aligned_cols=36 Identities=39% Similarity=0.379 Sum_probs=32.7
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
-.+++++|||+|.+|.++++.|...|.+|+|+++..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 457899999999999999999999999999999864
No 191
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=91.79 E-value=1.1 Score=45.10 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=76.5
Q ss_pred HHHHHHcCCCceeecccc----ccHHHHHHHh-cCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEeccCC--
Q 014691 273 NEAFKSVGFNGVFVHLLV----DDIAKFFQTY-SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG-- 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g-- 345 (420)
....+++|++..-..++- +++.+.++.+ .++...|+-|-.|... ++|+ -+.+.+++.-.=- ||
T Consensus 108 ~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~----hid~----~~i~~~I~p~KDV--DGl~ 177 (345)
T PLN02897 108 IKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQ----HLDE----SKILNMVRLEKDV--DGFH 177 (345)
T ss_pred HHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccCc--cCCC
Confidence 346888999887665553 2577777777 5678999999999752 2322 1122222222100 12
Q ss_pred -----eE-EEEe------cCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 346 -----KL-FGYN------TDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 346 -----~l-~G~N------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
++ .|.+ .--.|++.-|++. +.+++||+|+|||-+. +|+-++.-|.+.|+.|+++..
T Consensus 178 p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~-----------~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs 246 (345)
T PLN02897 178 PLNVGNLAMRGREPLFVSCTPKGCVELLIRS-----------GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHA 246 (345)
T ss_pred HHHHHHHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcC
Confidence 22 1111 1145556655543 2678999999999877 999999999999999888874
No 192
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.79 E-value=0.22 Score=54.76 Aligned_cols=36 Identities=39% Similarity=0.462 Sum_probs=32.9
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
-.+|+|+|||+|.+|.++++.|...|.+|+|++++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 357899999999999999999999999999999864
No 193
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.74 E-value=4.5 Score=38.10 Aligned_cols=120 Identities=22% Similarity=0.220 Sum_probs=75.0
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCC-Cc-EEEEeccCCCCCCCCCCHHHHHH
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESP-VP-TLFTYRPIWEGGQYDGDENERVD 102 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~-~P-iI~T~R~~~eGG~~~~~~~~~~~ 102 (420)
.|...|...+.+++..-++.+.+.|..++|+-++. + ...+.++.++++.+ .| +++=.=| . .+. +
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~-~--~a~~~i~~l~~~~~~~p~~~vGaGT-----V--~~~----~ 79 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTN-P--FASEVIKELVELYKDDPEVLIGAGT-----V--LDA----V 79 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC-c--cHHHHHHHHHHHcCCCCCeEEeeee-----C--CCH----H
Confidence 35556889999999999999889999999999983 1 22345666665543 23 4432211 1 122 2
Q ss_pred HHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
-.+.+++.|++|+ |-=...+++.+.. +..+..+|--.| || +|+ .++.+.|+|++|+
T Consensus 80 ~~~~a~~aGA~Fi-vsP~~~~~v~~~~---~~~~i~~iPG~~----T~--~E~----~~A~~~Gad~vkl 135 (213)
T PRK06552 80 TARLAILAGAQFI-VSPSFNRETAKIC---NLYQIPYLPGCM----TV--TEI----VTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHcCCCEE-ECCCCCHHHHHHH---HHcCCCEECCcC----CH--HHH----HHHHHcCCCEEEE
Confidence 4567888899987 3333444444433 345666665544 44 343 3444689999998
No 194
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=91.74 E-value=0.23 Score=49.13 Aligned_cols=39 Identities=44% Similarity=0.572 Sum_probs=34.9
Q ss_pred CCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
|+=++|-|| .|.||+-+..|++.|.+|++++||.+|.+.
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~ 88 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEA 88 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 466888897 679999999999999999999999999764
No 195
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=91.72 E-value=0.29 Score=48.87 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=35.9
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
..+.||++.|+|-|.+|++++.-|..+|++|+.++|+.++
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~ 171 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS 171 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3567899999999999999999999999999999997654
No 196
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.72 E-value=5.8 Score=38.10 Aligned_cols=120 Identities=18% Similarity=0.260 Sum_probs=74.4
Q ss_pred HHHHHhhCC-CcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCC
Q 014691 69 IKTLIKESP-VPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQ 147 (420)
Q Consensus 69 l~~l~~~~~-~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~ 147 (420)
++.+.+..+ .|+++-.-+ |... +.++-.+..++.++.|++.|-||-.. +....+...+..+.-|| -+-+.
T Consensus 64 ~~~I~r~~~~~pviaD~~~----G~g~-~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~Vi-aRtd~- 134 (240)
T cd06556 64 VRAVRRGAPLALIVADLPF----GAYG-APTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVI-AHTGL- 134 (240)
T ss_pred HHHHHhhCCCCCEEEeCCC----CCCc-CHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEE-EEeCC-
Confidence 444555554 699988654 4443 54566677788888999999999863 23333332222345444 33232
Q ss_pred CCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCC
Q 014691 148 YTP-----------------SVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGE 203 (420)
Q Consensus 148 ~tP-----------------~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~ 203 (420)
+| +.+++.+......+.|||.+=+=.. +.++..+ +....++|++++++|.
T Consensus 135 -~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~---i~~~~~~P~~~~gag~ 201 (240)
T cd06556 135 -TPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQ---ITEALAIPLAGIGAGS 201 (240)
T ss_pred -chhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHH---HHHhCCCCEEEEecCc
Confidence 22 2345666666677899999877533 6666644 4444678999998886
No 197
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.67 E-value=0.3 Score=46.42 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=33.1
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+++++|||+|+|.+|..=+..|.+.|++|+|++-+.
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 45678999999999999888888999999999998653
No 198
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=91.66 E-value=0.22 Score=48.13 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=30.9
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
-.|+|||+|.+|.++++.|++.|.+|.|+.|+..
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4699999999999999999999999999998753
No 199
>PLN02602 lactate dehydrogenase
Probab=91.58 E-value=0.28 Score=49.79 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=33.4
Q ss_pred CEEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhhhh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYENLQ 418 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~--~i~v~nR~~~ka~ 418 (420)
+++.|||+|.+|.+++|.|...|. ++.+++++.++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~ 76 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLR 76 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhh
Confidence 699999999999999999998886 8999999887664
No 200
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.56 E-value=0.25 Score=55.16 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=32.6
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..+++|+|||+|.+|.++++.|...|.+|+|+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46889999999999999999999999999999874
No 201
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=91.56 E-value=1.3 Score=41.66 Aligned_cols=92 Identities=17% Similarity=0.347 Sum_probs=60.5
Q ss_pred CCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecC---------CCCC---Cc---hhHHHHHHhhCCCcEEEE
Q 014691 19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDG---------LKNF---NP---RENIKTLIKESPVPTLFT 83 (420)
Q Consensus 19 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~---------l~~~---~~---~~~l~~l~~~~~~PiI~T 83 (420)
-..+.| +.+.|.+.+.+++.+.++.+.+.|+|.||+-+-+ +... ++ .+.++.+++....|+.+-
T Consensus 51 ~~~~~p-~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk 129 (231)
T cd02801 51 NPEERP-LIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVK 129 (231)
T ss_pred CccCCC-EEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 344445 4568999999999999988877899999997654 2110 11 123444444456777777
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 014691 84 YRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117 (420)
Q Consensus 84 ~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDi 117 (420)
+|..+ ... ++-.++.+.+.+.|+++|.|
T Consensus 130 ~r~~~-----~~~-~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 130 IRLGW-----DDE-EETLELAKALEDAGASALTV 157 (231)
T ss_pred Eeecc-----CCc-hHHHHHHHHHHHhCCCEEEE
Confidence 77422 111 35666777777889999877
No 202
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=91.54 E-value=3.4 Score=38.41 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=64.5
Q ss_pred CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEe---cCCCCCC-chhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHH
Q 014691 23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRL---DGLKNFN-PRENIKTLIKESPVPTLFTYRPIWEGGQYDGDEN 98 (420)
Q Consensus 23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl---D~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~ 98 (420)
+..|.++|...|...+.++++.+.+.|+|+|++|+ .+.++.. ..+.++.+++..+.|+-+.+-.. +.+
T Consensus 3 ~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--------d~~ 74 (220)
T PRK05581 3 MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--------NPD 74 (220)
T ss_pred CcEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--------CHH
Confidence 34688999999999999999999999999999986 2222211 13345555543344543333321 333
Q ss_pred HHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcc
Q 014691 99 ERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH 144 (420)
Q Consensus 99 ~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H 144 (420)
.+. +.+.+.|+|+|=+=....+.....+...+..+.+++++.|
T Consensus 75 ~~i---~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (220)
T PRK05581 75 RYV---PDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLN 117 (220)
T ss_pred HHH---HHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEEC
Confidence 444 3445778888544333222222222222345667777764
No 203
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.54 E-value=0.27 Score=51.80 Aligned_cols=36 Identities=42% Similarity=0.437 Sum_probs=32.7
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+++++|||+|.+|.++++.|...|.+|+|+.+..
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 367899999999999999999999999999998764
No 204
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.52 E-value=0.33 Score=48.50 Aligned_cols=39 Identities=31% Similarity=0.403 Sum_probs=34.4
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|++|+|+|+|++|.+++..+..+|+ +|++++|+++|.+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~ 208 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS 208 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 57899999999999999988889999 7999999877654
No 205
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=91.51 E-value=0.23 Score=51.97 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=36.2
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
.+++||+|+|||+|-+|--++-.|.+.|.+|+++-|++.
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 578999999999999999999999999999999999864
No 206
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.50 E-value=4.2 Score=39.25 Aligned_cols=138 Identities=20% Similarity=0.210 Sum_probs=81.3
Q ss_pred cEEEEeecC--CC-----HHHHHHHHHhhhhcCCCEEEEEecCCCCCCchh---HHHHHH---hhCCCcEEEEeccCCCC
Q 014691 24 TLICVPIMG--ES-----VDKMVVDMGKANASGADLVEIRLDGLKNFNPRE---NIKTLI---KESPVPTLFTYRPIWEG 90 (420)
Q Consensus 24 ~~icv~l~~--~~-----~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~---~~~~~PiI~T~R~~~eG 90 (420)
..+|+++.+ +. .+....++++++..|+|.|-+|...... ...+ .++.+. ++.+.|+++-.= ..|
T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~G 147 (258)
T TIGR01949 71 VGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSD-TEWEQIRDLGMIAEICDDWGVPLLAMMY--PRG 147 (258)
T ss_pred CcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEe--ccC
Confidence 346777722 22 1235566788888999999999875432 1112 233333 345788876211 333
Q ss_pred CCCC-CCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691 91 GQYD-GDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD 168 (420)
Q Consensus 91 G~~~-~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD 168 (420)
.... .+.+...+..+.+.+.|+|||=+.+....+.++++... ...+|+++=- -.+.+.++..+.++++.+.||+
T Consensus 148 vh~~~~~~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~--~~iPVva~GG--i~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 148 PHIDDRDPELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred cccccccHHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh--CCCcEEEecC--CCCCCHHHHHHHHHHHHHcCCc
Confidence 3221 23333334457778899999998865444556666532 3456665421 1122467788888888899998
No 207
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.43 E-value=0.4 Score=49.12 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=34.6
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..+.||++-|||.|.+|++++..|..+|++|..+|+.
T Consensus 112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~ 148 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPP 148 (378)
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCc
Confidence 5789999999999999999999999999999999975
No 208
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=91.43 E-value=0.41 Score=46.31 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=30.4
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..|+|||+|.+|.++++.|++.|.+|.|+.|..
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 469999999999999999999999999999864
No 209
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.33 E-value=3.5 Score=40.47 Aligned_cols=85 Identities=25% Similarity=0.310 Sum_probs=52.5
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc------------cchhHHHhh-cCCC-CcEEEE
Q 014691 76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA------------REFNDSIRG-KKPE-KCKVIV 141 (420)
Q Consensus 76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~------------~~~~~~l~~-~~~~-~~kiI~ 141 (420)
.+.|+++.++. . +.+++.+..+.+.+.|+|+|+|-+.++ .+...++.. .++. +..|.+
T Consensus 88 ~~~p~ivsi~g-----~---~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 88 FGTPVIASIAG-----S---TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred CCCcEEEEEec-----C---CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 46899999983 1 457788888888888999999955432 222223321 1111 233332
Q ss_pred EcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691 142 SSHNYQYTPSVEDLSNLVARIQASGADIVKFA 173 (420)
Q Consensus 142 S~H~f~~tP~~~el~~~~~~~~~~gaDivKia 173 (420)
=. +|+.+++.++.+.+.+.|+|.+.+.
T Consensus 160 Kl-----~~~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 160 KL-----TPNVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred Ee-----CCCchhHHHHHHHHHHcCCCEEEEE
Confidence 21 3555567777777777888877654
No 210
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=91.23 E-value=3.9 Score=37.65 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=49.7
Q ss_pred EeecCCCHHHHHHHHHhhhhcCCCEEEEE-ec--CCCCCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691 28 VPIMGESVDKMVVDMGKANASGADLVEIR-LD--GLKNFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDV 103 (420)
Q Consensus 28 v~l~~~~~~e~~~~~~~~~~~~~D~vElR-lD--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l 103 (420)
++|...|.+.+.++++.+...|+|.||+- .| +.+++.. .+.++.+++..+.|+.+.+... +.+. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~--------~~~~---~ 71 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVE--------NPDR---Y 71 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeC--------CHHH---H
Confidence 45777888888899988888899999995 33 2233222 3456666655567764444332 1222 3
Q ss_pred HHHHHHhCCcEEEE
Q 014691 104 LRLAMELGADYIDV 117 (420)
Q Consensus 104 l~~~~~~~~d~iDi 117 (420)
++.+.+.|+|.|=+
T Consensus 72 ~~~~~~~gadgv~v 85 (210)
T TIGR01163 72 IEDFAEAGADIITV 85 (210)
T ss_pred HHHHHHcCCCEEEE
Confidence 55666778777444
No 211
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=91.22 E-value=3 Score=40.53 Aligned_cols=153 Identities=17% Similarity=0.139 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHh--hCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHHH
Q 014691 33 ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK--ESPVPTLFTYRPI-WEGGQYDGDENERVDVLRLAME 109 (420)
Q Consensus 33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~ 109 (420)
.+.+++..-++++.+.++|.|=+---+ +....+ ..+.|+++++=+. .-| .. ...+....-.+.+++
T Consensus 36 ~~~~d~~~~~~~a~~~~~~av~v~~~~---------~~~~~~~~~~~~~l~~~i~~~~~~~-~~-~~~~~~~~~ve~A~~ 104 (267)
T PRK07226 36 DGLVDIRDTVNKVAEGGADAVLMHKGL---------ARHGHRGYGRDVGLIVHLSASTSLS-PD-PNDKVLVGTVEEAIK 104 (267)
T ss_pred cCcCCHHHHHHHHHhcCCCEEEeCHhH---------HhhhccccCCCCcEEEEEcCCCCCC-CC-CCcceeeecHHHHHH
Confidence 355666666666667677776543211 221111 2467777765421 111 10 111345556778999
Q ss_pred hCCcEEEEEccccc----chh---HHHhh-cCCCCcEEEEE-ccc---CCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Q 014691 110 LGADYIDVELQVAR----EFN---DSIRG-KKPEKCKVIVS-SHN---YQYTPSVEDLSNLVARIQASGADIVKFATTAL 177 (420)
Q Consensus 110 ~~~d~iDiEl~~~~----~~~---~~l~~-~~~~~~kiI~S-~H~---f~~tP~~~el~~~~~~~~~~gaDivKia~~~~ 177 (420)
.|++.||+=+.... +.. .++.. .++.+..+|+- +-+ .+..-+.+++.+..+.+.+.|||++|.-...
T Consensus 105 ~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~- 183 (267)
T PRK07226 105 LGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG- 183 (267)
T ss_pred cCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC-
Confidence 99999998655321 222 22222 23456666663 211 1111233455665677778999999997431
Q ss_pred CHHHHHHHHHHhccCCCCEEEEe
Q 014691 178 DITDVARVFQITVHSQVPIIGLV 200 (420)
Q Consensus 178 s~~D~~~ll~~~~~~~~p~I~~~ 200 (420)
|...+-+.....++|+.+.+
T Consensus 184 ---~~~~l~~~~~~~~ipV~a~G 203 (267)
T PRK07226 184 ---DPESFREVVEGCPVPVVIAG 203 (267)
T ss_pred ---CHHHHHHHHHhCCCCEEEEe
Confidence 33333334444467876655
No 212
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=91.22 E-value=9.8 Score=35.84 Aligned_cols=145 Identities=18% Similarity=0.161 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691 32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG 111 (420)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 111 (420)
..|.+++.+-++++.+.+...|=+.--+. +..++.++..++ -+.|+=.-..|.. +-+.+..-.+.+++.|
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v------~~a~~~l~~~~v-~v~tVigFP~G~~---~~~~K~~E~~~Av~~G 83 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV------PLAKELLKGTEV-RICTVVGFPLGAS---TTDVKLYETKEAIKYG 83 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH------HHHHHHcCCCCC-eEEEEeCCCCCCC---cHHHHHHHHHHHHHcC
Confidence 34566777767776666554443311111 122333333343 3445544344432 3356666678899999
Q ss_pred CcEEEEEcccc-------cchhHHH---hh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE--e--ec
Q 014691 112 ADYIDVELQVA-------REFNDSI---RG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFA--T--TA 176 (420)
Q Consensus 112 ~d~iDiEl~~~-------~~~~~~l---~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia--~--~~ 176 (420)
+|-||+=++.. +...+++ .. .+.--.|+|+-... .+.+++....+-+.+.|||++|-- . ..
T Consensus 84 AdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~----L~~~ei~~a~~ia~eaGADfvKTsTGf~~~g 159 (211)
T TIGR00126 84 ADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL----LTDEEIRKACEICIDAGADFVKTSTGFGAGG 159 (211)
T ss_pred CCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence 99999977653 1122233 22 22223577765432 244678888888889999999987 2 34
Q ss_pred CCHHHHHHHHHHhc
Q 014691 177 LDITDVARVFQITV 190 (420)
Q Consensus 177 ~s~~D~~~ll~~~~ 190 (420)
-+.+|+..+.+...
T Consensus 160 at~~dv~~m~~~v~ 173 (211)
T TIGR00126 160 ATVEDVRLMRNTVG 173 (211)
T ss_pred CCHHHHHHHHHHhc
Confidence 57788877777654
No 213
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=91.15 E-value=14 Score=34.91 Aligned_cols=200 Identities=18% Similarity=0.234 Sum_probs=115.2
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGA 112 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~ 112 (420)
+.++.++-++...+.|.|.||+=.-...+ ++.+.++.+.+.. +.++..-+|. ..+.--..++.+...|+
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~g~ 81 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCRA---------NEEDIERAVEAAKEAGI 81 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEES---------CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeeee---------hHHHHHHHHHhhHhccC
Confidence 34455555555566799999998332221 2234566555432 3445445662 22222223566677899
Q ss_pred cEEEEEccccc----------------chhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691 113 DYIDVELQVAR----------------EFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA 176 (420)
Q Consensus 113 d~iDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~ 176 (420)
+.+.+-...++ ...+.+...+..+.++-.+.=+...+ +.+++.+.++++.++|+|++-|+=+.
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~l~Dt~ 160 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRT-DPEELLELAEALAEAGADIIYLADTV 160 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGS-SHHHHHHHHHHHHHHT-SEEEEEETT
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccc-cHHHHHHHHHHHHHcCCeEEEeeCcc
Confidence 99999776654 11111222345677886666544333 46789999999999999999998554
Q ss_pred --CCHHHHHHHHHHhccC--CCCEEEEecCCc--chhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 177 --LDITDVARVFQITVHS--QVPIIGLVMGER--GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 177 --~s~~D~~~ll~~~~~~--~~p~I~~~MG~~--G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
-+|.++..+++.+.+. +.|+-..+=-.. +...=+..-..|..+.=+++..- .-.+|+.+++++...++
T Consensus 161 G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~Gl-G~~~Gn~~le~lv~~L~ 234 (237)
T PF00682_consen 161 GIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGL-GERAGNAPLEELVAALE 234 (237)
T ss_dssp S-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGG-SSTTSB-BHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccC-CCCCCCccHHHHHHHHh
Confidence 4689998888876542 355544332233 33333444444544433344321 24599999998876664
No 214
>PRK14851 hypothetical protein; Provisional
Probab=91.11 E-value=0.25 Score=54.43 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=32.2
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
+++++|+|+|+||.|..++..|+..|+ +++|++-+
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 567899999999999999999999999 99999864
No 215
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=91.08 E-value=8.1 Score=38.68 Aligned_cols=150 Identities=15% Similarity=0.221 Sum_probs=88.8
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC----C------C--Cc---hhHHHHHHhhCCCcEEEEeccCCCC
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK----N------F--NP---RENIKTLIKESPVPTLFTYRPIWEG 90 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~------~--~~---~~~l~~l~~~~~~PiI~T~R~~~eG 90 (420)
+.+-|.+.+.+++.+-++.+...|+|.||+=+-+=. . + ++ .+.++.+++..+.|+.+-+|.
T Consensus 67 ~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~---- 142 (321)
T PRK10415 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT---- 142 (321)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc----
Confidence 457899999999988777766789999999887521 0 0 11 122334444457898888883
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691 91 GQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV 170 (420)
Q Consensus 91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv 170 (420)
| |..+.++..++.+.+.+.|+++|.|.-.... + .+.++++++.+. .+.+. .++.
T Consensus 143 G-~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~-----------~---------~~~G~a~~~~i~-~ik~~----~~iP 196 (321)
T PRK10415 143 G-WAPEHRNCVEIAQLAEDCGIQALTIHGRTRA-----------C---------LFNGEAEYDSIR-AVKQK----VSIP 196 (321)
T ss_pred c-ccCCcchHHHHHHHHHHhCCCEEEEecCccc-----------c---------ccCCCcChHHHH-HHHHh----cCCc
Confidence 3 3333345667888888889999987532100 0 012334443222 22221 1333
Q ss_pred EEE-eecCCHHHHHHHHHHhccCCCCEEEEecCCcchhh
Q 014691 171 KFA-TTALDITDVARVFQITVHSQVPIIGLVMGERGLIS 208 (420)
Q Consensus 171 Kia-~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~S 208 (420)
=++ .-..|.+|..++++. .+...+.++.|-.+.+.
T Consensus 197 VI~nGgI~s~~da~~~l~~---~gadgVmiGR~~l~nP~ 232 (321)
T PRK10415 197 VIANGDITDPLKARAVLDY---TGADALMIGRAAQGRPW 232 (321)
T ss_pred EEEeCCCCCHHHHHHHHhc---cCCCEEEEChHhhcCCh
Confidence 222 222577888766644 45567788877766553
No 216
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=91.08 E-value=0.27 Score=47.51 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=32.5
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+...+|+|+|+||.|..++..|+..|+ +|+|++-+
T Consensus 23 KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD 59 (287)
T PTZ00245 23 QLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEG 59 (287)
T ss_pred HHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCC
Confidence 3566799999999999999999999999 99999865
No 217
>PRK06046 alanine dehydrogenase; Validated
Probab=91.07 E-value=0.28 Score=49.23 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=33.7
Q ss_pred CCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhc
Q 014691 381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~ 419 (420)
-+++.|||+|+.|++.+.++.. .++ +|+|+||+.+++++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~ 169 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEK 169 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHH
Confidence 4689999999999999998874 467 89999999988765
No 218
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=91.04 E-value=0.88 Score=50.61 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=63.4
Q ss_pred ccHHHHHHHhc--CCCCCEEEE---cccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeEEEEecC-HHHHHHHHHhh
Q 014691 291 DDIAKFFQTYS--SNDFAGFSC---TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD-YVGAISAIEDG 364 (420)
Q Consensus 291 ~~l~~~~~~~~--~~~~~G~~V---T~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD-~~G~~~~l~~~ 364 (420)
+|.++|++..+ .+.|.|+|. ..|+=..+ ++++.+ ..|.-++. |. .+|.-.= -.|++++++-.
T Consensus 112 ~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i---~~~~~~------~~~ip~f~--DD-~~GTa~v~lA~l~na~~~~ 179 (752)
T PRK07232 112 EDPDKFIEAVAALEPTFGGINLEDIKAPECFYI---EEKLRE------RMDIPVFH--DD-QHGTAIISAAALLNALELV 179 (752)
T ss_pred CCHHHHHHHHHHhCCCccEEeeeecCCchHHHH---HHHHHH------hcCCCeec--cc-cchHHHHHHHHHHHHHHHh
Confidence 46777777663 578999885 33433333 333222 22333343 32 3443322 34556666532
Q ss_pred hccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC---eEEEEeCC
Q 014691 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANRT 413 (420)
Q Consensus 365 ~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~---~i~v~nR~ 413 (420)
+..++..++++.|||.+|-+++.-|...|+ +|+++++.
T Consensus 180 -----------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 220 (752)
T PRK07232 180 -----------GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSK 220 (752)
T ss_pred -----------CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 246778899999999999999999999998 79999863
No 219
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=91.02 E-value=10 Score=36.16 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=61.4
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC-----------CCchhHHHHHH---hhCCCcEEEEeccCCCC
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN-----------FNPRENIKTLI---KESPVPTLFTYRPIWEG 90 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~-----------~~~~~~l~~l~---~~~~~PiI~T~R~~~eG 90 (420)
.+.+.+.+.|++++..-++.. ..++|.||+=.-+=.. ..+.+.+..+. +..++|+.+-+|...
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~-- 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC-- 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--
Confidence 466899999999999877775 5589999998776210 01112333333 245789999999632
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEEEEccc
Q 014691 91 GQYDGDENERVDVLRLAMELGADYIDVELQV 121 (420)
Q Consensus 91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~ 121 (420)
++....++.+.+.+.|+++|-|+-..
T Consensus 146 -----~~~~~~~~a~~l~~aGad~i~Vd~~~ 171 (231)
T TIGR00736 146 -----IPLDELIDALNLVDDGFDGIHVDAMY 171 (231)
T ss_pred -----CcchHHHHHHHHHHcCCCEEEEeeCC
Confidence 23456678888889999999887433
No 220
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=90.98 E-value=4.4 Score=40.93 Aligned_cols=300 Identities=19% Similarity=0.267 Sum_probs=156.8
Q ss_pred ccccCCCCCCcEEEEeec---CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCC
Q 014691 14 LVSGGMRKNPTLICVPIM---GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEG 90 (420)
Q Consensus 14 ~~~~~~~~~~~~icv~l~---~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG 90 (420)
+|+-.+.-+.|...=+.+ -.|.+..++|+++..+.|||+|=+-+.-.. ..+.+..+.+.+++|++.-+-
T Consensus 17 VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~---~a~al~~I~~~~~iPlvADIH----- 88 (360)
T PRK00366 17 VGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDME---AAAALPEIKKQLPVPLVADIH----- 88 (360)
T ss_pred EcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHH---HHHhHHHHHHcCCCCEEEecC-----
Confidence 333334444444333333 345777888999988999999876655332 345677888888999997653
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc---cchhHHHh-hcCCCCcEE-EEEccc---------CC-CCCC--HH
Q 014691 91 GQYDGDENERVDVLRLAMELGADYIDVELQVA---REFNDSIR-GKKPEKCKV-IVSSHN---------YQ-YTPS--VE 153 (420)
Q Consensus 91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---~~~~~~l~-~~~~~~~ki-I~S~H~---------f~-~tP~--~~ 153 (420)
|+ +++...+++.|+|-|=|-=... ++.++.+. .++..++.| |.-.|= +. .||. .+
T Consensus 89 --Fd------~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamve 160 (360)
T PRK00366 89 --FD------YRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVE 160 (360)
T ss_pred --CC------HHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHH
Confidence 21 2344567777888776542221 22333443 233444444 433321 11 2441 13
Q ss_pred HHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhcc-CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCC
Q 014691 154 DLSNLVARIQASGADIVKFATTALDITDVARVFQITVH-SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAP 232 (420)
Q Consensus 154 el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~-~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAP 232 (420)
...+..+-+.++|-+=+|+-..+.+..+..+..+++.+ .+.|+ .++.-+.|.. .-+.+. ||-
T Consensus 161 SAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~~dyPL-HlGvTEAG~~------------~~G~iK----Sa~ 223 (360)
T PRK00366 161 SALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKRCDYPL-HLGVTEAGMG------------FKGTVK----SAA 223 (360)
T ss_pred HHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhcCCCCc-eecccCCCCC------------CCceeh----hHH
Confidence 34555667778888888999999988888777776654 35553 3333333211 001110 110
Q ss_pred CCCCHHhHHHHHhccccCCCceEEeeeccCccccccHHHHHHHHHHcCCCce---eeccc-c----ccHHHHHHHhcCCC
Q 014691 233 GQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGV---FVHLL-V----DDIAKFFQTYSSND 304 (420)
Q Consensus 233 GQ~~~~~l~~~~~~~~~~~~~~~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~---y~~~~-~----~~l~~~~~~~~~~~ 304 (420)
-+-.++ ..++ ++|-++-+-++|+..-+ .=...++.+||... ....+ | .|+......+. ..
T Consensus 224 ------gig~LL-~~GI-GDTiRVSLt~~P~~EV~---va~~IL~slglr~~g~~IisCPgCgR~~~D~~~la~~ve-e~ 291 (360)
T PRK00366 224 ------GLGALL-QEGI-GDTIRVSLTADPVEEVK---VGQEILQSLGLRSRGPEVISCPTCGRTEFDVIQELAEVE-QR 291 (360)
T ss_pred ------HHHHHH-HhcC-CCeEEEeCCCCCHHHHH---HHHHHHHHcCCccCCCeEEECCCCCCCcccHHHHHHHHH-HH
Confidence 111111 1233 46777777777755432 23456778887532 22221 1 13333333331 12
Q ss_pred CCEEEEcccchHHHHhhh-hccc-HHHHHhcce----eEEEEeccCCeEEEEecCHHHHHHHHHh
Q 014691 305 FAGFSCTIPHKEAAVKCC-DEVD-TVAKSIGAV----NCIIRRQSDGKLFGYNTDYVGAISAIED 363 (420)
Q Consensus 305 ~~G~~VT~P~K~~i~~~~-d~l~-~~A~~iGAv----NTi~~~~~~g~l~G~NTD~~G~~~~l~~ 363 (420)
|.| +.+|+|..|+.+. .--. ..-+.+|-+ .-+++. +|+.+.- ....-++..|.+
T Consensus 292 ~~~--~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~--~Gk~v~k-v~~~~~~~~l~~ 351 (360)
T PRK00366 292 LEH--IKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFV--DGEKIKT-LPEENIVEELEA 351 (360)
T ss_pred hcC--CCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEE--CCEEeee-eChHhHHHHHHH
Confidence 344 3678999998884 3322 222334322 233344 6766553 444444444433
No 221
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=90.92 E-value=0.28 Score=46.48 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=30.3
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..|+|+|||.+|..++|.|++.|.+|.|+.|+.
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 358999999999999999999999999999864
No 222
>PRK07574 formate dehydrogenase; Provisional
Probab=90.89 E-value=0.35 Score=49.74 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=35.2
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+.||++.|||.|.+|++++..|..+|++|+.+||+.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~ 225 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR 225 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 45789999999999999999999999999999999975
No 223
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.86 E-value=0.38 Score=47.85 Aligned_cols=38 Identities=34% Similarity=0.496 Sum_probs=34.5
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+.||++.|||-|.+|++++.-|..+|++|+.+||+.
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~ 155 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY 155 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35789999999999999999998888999999999974
No 224
>PLN02686 cinnamoyl-CoA reductase
Probab=90.85 E-value=0.39 Score=48.80 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=35.1
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
.+.++|++||.|+ |+.|++++..|.+.|++|+++.|+.++.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~ 90 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDK 90 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4567899999997 7899999999999999998888876543
No 225
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=90.79 E-value=3.4 Score=40.22 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=69.7
Q ss_pred EeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEEEcccc-------------cchhHHHhhcCCCCcEEEEEcccC
Q 014691 83 TYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDVELQVA-------------REFNDSIRGKKPEKCKVIVSSHNY 146 (420)
Q Consensus 83 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~-------------~~~~~~l~~~~~~~~kiI~S~H~f 146 (420)
|+| ||++ +..+.+++.++.+..-+.|+++|++=.-.. .+.++.+......++++.+-.+..
T Consensus 5 TLR---DG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 5 TLR---DGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred Ccc---cCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 677 5664 456778999999999999999988853221 344555553322356766544322
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCC
Q 014691 147 QYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV 194 (420)
Q Consensus 147 ~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~ 194 (420)
.. ..+.++.+.+.|.|++++++..++.+.+....+..+....
T Consensus 82 ~~------~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~ 123 (266)
T cd07944 82 ND------DIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGY 123 (266)
T ss_pred CC------CHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCC
Confidence 11 1334666677899999999999888888888777665544
No 226
>PRK04148 hypothetical protein; Provisional
Probab=90.78 E-value=0.39 Score=41.96 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=33.5
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
+++++++||.| .|.+++..|.++|++|+.++.+++..+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~ 53 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVE 53 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 46789999999 888889999999999999999987654
No 227
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.75 E-value=0.42 Score=47.90 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.5
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR 412 (420)
.|++|+|+|+|++|..++..+...|++|++++|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 578999999999999999988899999999998
No 228
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=90.68 E-value=19 Score=36.27 Aligned_cols=199 Identities=15% Similarity=0.167 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhhhcCCCEEEEE---------ec-CCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691 35 VDKMVVDMGKANASGADLVEIR---------LD-GLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDV 103 (420)
Q Consensus 35 ~~e~~~~~~~~~~~~~D~vElR---------lD-~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l 103 (420)
.++.+.-++.+.+.|+|.||+= .+ -+....+.+.++.++... +.++.+-++. |.. . .+-
T Consensus 24 ~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~p----g~~--~----~~d 93 (337)
T PRK08195 24 LEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLP----GIG--T----VDD 93 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEecc----Ccc--c----HHH
Confidence 3444444445556799999992 22 122223345566665433 3344433442 111 1 234
Q ss_pred HHHHHHhCCcEEEEEccccc-chhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691 104 LRLAMELGADYIDVELQVAR-EFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDI 179 (420)
Q Consensus 104 l~~~~~~~~d~iDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~ 179 (420)
++.+.+.|++.|-|-....+ +...+.. ..+..+.++.++.-+. ...+.+++.+..+++.++|||.+-++=+. -++
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 172 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLP 172 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCH
Confidence 67888999999887654433 2222222 2344566776654432 23356889999999999999998887554 468
Q ss_pred HHHHHHHHHhccC---CCCEEEEecCCcc--hhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 180 TDVARVFQITVHS---QVPIIGLVMGERG--LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 180 ~D~~~ll~~~~~~---~~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
+|+.++++.+.+. ++|+-..+=-.+| ...=+..-.-|..+.=+++.. -....|.++++++...++
T Consensus 173 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G-lG~~aGN~~tE~lv~~L~ 242 (337)
T PRK08195 173 EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAG-LGAGAGNTPLEVLVAVLD 242 (337)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChh-hcccccCccHHHHHHHHH
Confidence 9999988876542 4554433222222 222222223344333344432 124678888877665544
No 229
>PLN02477 glutamate dehydrogenase
Probab=90.66 E-value=0.65 Score=48.12 Aligned_cols=53 Identities=30% Similarity=0.397 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeCC
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT 413 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR~ 413 (420)
++|...+++..+.. .+.+++|++++|.|.|.+|+.++..|.+.|++|+ |.+.+
T Consensus 186 g~Gv~~~~~~~~~~-------~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 186 GRGVVFATEALLAE-------HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred hHHHHHHHHHHHHH-------cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 77888877776542 1357899999999999999999999999999766 77765
No 230
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.61 E-value=0.38 Score=48.44 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=34.4
Q ss_pred cccCCCEEEEEccchHHHHHHHHH-HhCCCeEEEEeCChhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGA-KAKGARVVIANRTYEN 416 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL-~~~g~~i~v~nR~~~k 416 (420)
..+.|+++.|||.|.+|++++..| ..+|++|+.++|+..+
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~ 182 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNA 182 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccH
Confidence 467899999999999999999998 5578899999987643
No 231
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=90.58 E-value=0.31 Score=51.09 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=31.0
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
..|+|||+|.+|.+++..|++.|.+|.|+.|...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4699999999999999999999999999998643
No 232
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=90.55 E-value=0.32 Score=56.07 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=32.4
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
++++|+|||+|.+|.++++.|+..|.+|+|+.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 57899999999999999999999999999998753
No 233
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=90.48 E-value=5.4 Score=38.76 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=74.0
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHH---hhCCCcEEEEeccCCCCCCCC--CCHHHHHHHHHHHH
Q 014691 36 DKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLI---KESPVPTLFTYRPIWEGGQYD--GDENERVDVLRLAM 108 (420)
Q Consensus 36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~ 108 (420)
+....++++++..|+|.+-+|+..-..... .+.+.++. +...+|+++-.. .+|.... .+++......+.+.
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~--~~g~~~e~~~~~~~i~~a~~~a~ 170 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMY--PRGPGIKNEYDPEVVAHAARVAA 170 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEe--cCCCccCCCccHHHHHHHHHHHH
Confidence 455666778888999999999876432111 12333343 335789887432 2222211 13445555567888
Q ss_pred HhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCC-CHHHHHHHHHHHHHcCCC
Q 014691 109 ELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP-SVEDLSNLVARIQASGAD 168 (420)
Q Consensus 109 ~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP-~~~el~~~~~~~~~~gaD 168 (420)
+.|+|||-..+.-+.+.++++... ..++|++|= --+. +.++..+.+.+..+.||+
T Consensus 171 e~GAD~vKt~~~~~~~~l~~~~~~--~~ipV~a~G---Gi~~~~~~~~l~~v~~~~~aGA~ 226 (267)
T PRK07226 171 ELGADIVKTNYTGDPESFREVVEG--CPVPVVIAG---GPKTDTDREFLEMVRDAMEAGAA 226 (267)
T ss_pred HHCCCEEeeCCCCCHHHHHHHHHh--CCCCEEEEe---CCCCCCHHHHHHHHHHHHHcCCc
Confidence 999999987754333455555432 234555541 1111 346777777777788887
No 234
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=90.44 E-value=0.73 Score=48.20 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEE-EEeCC
Q 014691 353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV-IANRT 413 (420)
Q Consensus 353 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~-v~nR~ 413 (420)
.++|.+..+++.+... +.+++||+|+|-|.|.+|..++..|.++|++|+ |.+.+
T Consensus 216 TG~Gv~~~~~~~l~~~-------~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKL-------NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred cHHHHHHHHHHHHHHc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4788888887776532 357899999999999999999999999999655 77765
No 235
>PLN03139 formate dehydrogenase; Provisional
Probab=90.42 E-value=0.42 Score=49.15 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=35.2
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+.||++.|||.|.+|++++..|..+|++|..++|+.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~ 232 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK 232 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC
Confidence 46889999999999999999999999999999999874
No 236
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=90.37 E-value=31 Score=37.68 Aligned_cols=209 Identities=16% Similarity=0.158 Sum_probs=127.6
Q ss_pred HHHHHHHHhhhhcCCCEEEEE----ecC---CCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 014691 36 DKMVVDMGKANASGADLVEIR----LDG---LKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLA 107 (420)
Q Consensus 36 ~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 107 (420)
++++.-+...-..|...+|.= +|- +...+|.+.|+.+++.. +.|+-.=+|..+==|..+.+++-....++.+
T Consensus 26 ~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a 105 (596)
T PRK14042 26 EDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLA 105 (596)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHH
Confidence 344444444445688888863 442 12235667787777654 5677666786666666666777777789999
Q ss_pred HHhCCcEEEEE--cccccchhHHHhhcCCCCcEEEEEcccCCCCC--CHHHHHHHHHHHHHcCCCEEEEEeec--CCHHH
Q 014691 108 MELGADYIDVE--LQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP--SVEDLSNLVARIQASGADIVKFATTA--LDITD 181 (420)
Q Consensus 108 ~~~~~d~iDiE--l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP--~~~el~~~~~~~~~~gaDivKia~~~--~s~~D 181 (420)
.+.|.|.+=|= ++..+.....+...++.|..+..+.- |...| +.+.+.+..+++.+.|||.+=|+=|+ -++.+
T Consensus 106 ~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~-yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~ 184 (596)
T PRK14042 106 VNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAIC-YTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTV 184 (596)
T ss_pred HHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEE-ecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHH
Confidence 99998877662 22222222222222334445544411 11233 55778999999999999999888776 47899
Q ss_pred HHHHHHHhccC-CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 182 VARVFQITVHS-QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 182 ~~~ll~~~~~~-~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
+.++.+.++.. +.|+-.. +.--+|..+=+..-.-|....=+++.. -.--+||++.+++...++.
T Consensus 185 v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~g-lGg~tGn~~tE~lv~~L~~ 251 (596)
T PRK14042 185 TVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISS-FSGGASHPPTEALVAALTD 251 (596)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEecccc-ccCCCCcHhHHHHHHHHHh
Confidence 98888876543 5665543 444444455455555565444444443 1245799999888777664
No 237
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.37 E-value=0.49 Score=45.89 Aligned_cols=39 Identities=38% Similarity=0.504 Sum_probs=33.6
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|++|+|+|+|++|.+++..+..+|+ +|++++++.+|.+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~ 159 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRE 159 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 57899999999999999998889999 5888888877643
No 238
>PRK13984 putative oxidoreductase; Provisional
Probab=90.36 E-value=0.38 Score=52.26 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=32.7
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
-++++++|||+|.+|.++++.|.++|.+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~ 316 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS 316 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 357899999999999999999999999999998764
No 239
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=90.34 E-value=18 Score=35.09 Aligned_cols=200 Identities=18% Similarity=0.139 Sum_probs=117.0
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCC--------CCchhHHHHHHhhC--CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLKN--------FNPRENIKTLIKES--PVPTLFTYRPIWEGGQYDGDENERVDV 103 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~--------~~~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~l 103 (420)
+.++.++-++.+.+.|+|.||+=.=.-.+ +.+.+.++.+++.. +.++..-+|... .+ .+.
T Consensus 18 ~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~----~~~ 87 (266)
T cd07944 18 GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN------DD----IDL 87 (266)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC------CC----HHH
Confidence 34444444444556799999986311110 11234566665432 567777777533 11 235
Q ss_pred HHHHHHhCCcEEEEEcccc--cchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CCH
Q 014691 104 LRLAMELGADYIDVELQVA--REFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA--LDI 179 (420)
Q Consensus 104 l~~~~~~~~d~iDiEl~~~--~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~--~s~ 179 (420)
++.+.+.|+++|-+-.... +...+.+...+..+.+|.++.-+...+ +.+.+.+.++++.+.|+|.+-++=+. -++
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P 166 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGY-SDEELLELLELVNEIKPDVFYIVDSFGSMYP 166 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCC-CHHHHHHHHHHHHhCCCCEEEEecCCCCCCH
Confidence 6677788899877764332 222222223345577887776653333 46789999999999999999888554 578
Q ss_pred HHHHHHHHHhccC-C--CCEEEEecCCcchh--hhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 180 TDVARVFQITVHS-Q--VPIIGLVMGERGLI--SRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 180 ~D~~~ll~~~~~~-~--~p~I~~~MG~~G~~--SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
+++.++++.+... + .|+=..+=-..|.. .=+..-..|..+.-+++..- .-..|.++.+++...++
T Consensus 167 ~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~-G~~aGN~~~E~~v~~l~ 236 (266)
T cd07944 167 EDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGM-GRGAGNLPTELLLDYLN 236 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccC-CCCcCcHHHHHHHHHHH
Confidence 9999998876543 3 66654443333322 22222233443333444331 23578999888776654
No 240
>PRK12862 malic enzyme; Reviewed
Probab=90.32 E-value=1.3 Score=49.58 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=61.7
Q ss_pred cHHHHHHHh--cCCCCCEEEE---cccchHHHHhhhhcccHHHHHhcceeEEEEeccCCeEEEEecC-HHHHHHHHHhhh
Q 014691 292 DIAKFFQTY--SSNDFAGFSC---TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD-YVGAISAIEDGL 365 (420)
Q Consensus 292 ~l~~~~~~~--~~~~~~G~~V---T~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~~~~g~l~G~NTD-~~G~~~~l~~~~ 365 (420)
|.++|++.+ ..+.|.|+|. ..|+=..+ ++++.+ ..|.-++. |. .+|.-.= -.|++++++-.
T Consensus 121 d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i---~~~~~~------~~~ip~f~--DD-~~GTa~v~la~l~~a~~~~- 187 (763)
T PRK12862 121 DPDKLVEIVAALEPTFGGINLEDIKAPECFYI---ERELRE------RMKIPVFH--DD-QHGTAIIVAAALLNGLKLV- 187 (763)
T ss_pred CHHHHHHHHHHhCCCcceeeeecccCchHHHH---HHHHHh------cCCCceEe--cC-cccHHHHHHHHHHHHHHHh-
Confidence 445555554 2588999875 34443333 333221 23333343 32 3454322 45566666532
Q ss_pred ccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC---eEEEEeC
Q 014691 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVVIANR 412 (420)
Q Consensus 366 ~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~---~i~v~nR 412 (420)
+.+++..++++.|||.+|-+++.-|...|+ +|++++|
T Consensus 188 ----------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~ 227 (763)
T PRK12862 188 ----------GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDI 227 (763)
T ss_pred ----------CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcC
Confidence 246778899999999999999999999998 6999995
No 241
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.31 E-value=0.44 Score=46.99 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=32.4
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
++++++|+|+|++|..++..++..|+ .|.+++++.+|.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~ 183 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD 183 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence 46789999999999999988888999 5777888776643
No 242
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.15 E-value=0.35 Score=53.18 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=30.8
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..|+|||+|-+|.++||+|++.|.+|+|++|..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 579999999999999999999999999999863
No 243
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.10 E-value=0.66 Score=48.18 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=36.2
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
...++++|+|.|..|+.++..|.+.|.+++++++++++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~ 268 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAE 268 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 4568999999999999999999999999999999988754
No 244
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.10 E-value=2.7 Score=41.94 Aligned_cols=91 Identities=22% Similarity=0.410 Sum_probs=60.7
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCC--------CCC----Cc---hhHHHHHHhhCCCcEEEEecc
Q 014691 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGL--------KNF----NP---RENIKTLIKESPVPTLFTYRP 86 (420)
Q Consensus 22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l--------~~~----~~---~~~l~~l~~~~~~PiI~T~R~ 86 (420)
..| +.+-|.+.+.+++.+-++.+.+.|+|.||+=.-+= ... ++ .+.++.+++..++|+.+-+|.
T Consensus 62 ~~p-~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~ 140 (319)
T TIGR00737 62 ETP-ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI 140 (319)
T ss_pred cce-EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 344 55899999999999999888888999999965531 110 11 122344444567898888884
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 014691 87 IWEGGQYDGDENERVDVLRLAMELGADYIDVE 118 (420)
Q Consensus 87 ~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE 118 (420)
| +..++.+-.++.+.+.+.|+++|.|-
T Consensus 141 ----g-~~~~~~~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 141 ----G-WDDAHINAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred ----c-cCCCcchHHHHHHHHHHhCCCEEEEE
Confidence 2 22122234567777778899999883
No 245
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=90.08 E-value=0.78 Score=47.40 Aligned_cols=55 Identities=29% Similarity=0.367 Sum_probs=42.8
Q ss_pred ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-----------------chHHHHHHHHHHhCCCeEEEEeCC
Q 014691 351 NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-----------------GGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 351 NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-----------------GGaara~~~aL~~~g~~i~v~nR~ 413 (420)
--|..=++..+++.+.. .+++||++||-|+ |++|++++.+|...|++|++++|+
T Consensus 167 ~~~~~~I~~~~~~~~~~---------~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 167 MAEPEEIVAAAERALSP---------KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CCCHHHHHHHHHHHhhh---------cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 45556666666655531 3578999999987 569999999999999999999886
Q ss_pred h
Q 014691 414 Y 414 (420)
Q Consensus 414 ~ 414 (420)
.
T Consensus 238 ~ 238 (399)
T PRK05579 238 V 238 (399)
T ss_pred c
Confidence 4
No 246
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=90.01 E-value=13 Score=36.11 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=29.0
Q ss_pred EeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC
Q 014691 28 VPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF 63 (420)
Q Consensus 28 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~ 63 (420)
++.-.++.+...+-++...+.|+|++|+=+=+=++.
T Consensus 21 i~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~ 56 (263)
T CHL00200 21 ITAGDPDIVITKKALKILDKKGADIIELGIPYSDPL 56 (263)
T ss_pred EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Confidence 457788999999888888889999999987654433
No 247
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.94 E-value=0.53 Score=47.11 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=32.3
Q ss_pred CCCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~ 418 (420)
.|.+|+|+|+|++|..++..++. .|. +|++++++++|.+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~ 203 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD 203 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH
Confidence 47899999999999998877765 565 8999999887754
No 248
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.82 E-value=1 Score=39.61 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=32.5
Q ss_pred cccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeC
Q 014691 377 SALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 377 ~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR 412 (420)
.+++||+++|+|.+. .|+.++.-|.+.|+.++++++
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~ 60 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence 678999999999866 899999999999999999985
No 249
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=89.81 E-value=0.88 Score=40.98 Aligned_cols=48 Identities=35% Similarity=0.420 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEeCC
Q 014691 355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~nR~ 413 (420)
.|++..|+.. +.+++||+++|+|.++ +|+.++.-|.+.|+.|+++...
T Consensus 21 ~aii~lL~~~-----------~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~ 69 (160)
T PF02882_consen 21 LAIIELLEYY-----------GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK 69 (160)
T ss_dssp HHHHHHHHHT-----------T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT
T ss_pred HHHHHHHHhc-----------CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC
Confidence 4666666543 2578999999999887 9999999999999999998764
No 250
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=89.79 E-value=0.46 Score=50.27 Aligned_cols=35 Identities=34% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+++++|||+|.+|.+++..|...|.+|+|+.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 56899999999999999999999999999998753
No 251
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.74 E-value=1.4 Score=43.62 Aligned_cols=124 Identities=19% Similarity=0.324 Sum_probs=74.6
Q ss_pred HHHHHHcCCCceeeccc--c--ccHHHHHHHh-cCCCCCEEEEcccchHHH--HhhhhcccHHHHHhcceeEEEEeccCC
Q 014691 273 NEAFKSVGFNGVFVHLL--V--DDIAKFFQTY-SSNDFAGFSCTIPHKEAA--VKCCDEVDTVAKSIGAVNCIIRRQSDG 345 (420)
Q Consensus 273 n~~f~~~gl~~~y~~~~--~--~~l~~~~~~~-~~~~~~G~~VT~P~K~~i--~~~~d~l~~~A~~iGAvNTi~~~~~~g 345 (420)
....+++|++.....++ + +++.+.++.+ .++.+.|+-|-.|.-..+ -..++.+++ .+.+-..+..- -|
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g 129 (297)
T PRK14168 55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDP-DKDVDGFHPVN----VG 129 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhh----HH
Confidence 45688899997655443 2 3677777777 567899999999964211 011111111 11111111110 01
Q ss_pred eE-EEE------ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhC----CCeEEEEeC
Q 014691 346 KL-FGY------NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAK----GARVVIANR 412 (420)
Q Consensus 346 ~l-~G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~----g~~i~v~nR 412 (420)
++ .|. -.--.|++.-|+.. +.+++||+|+|||.+. +|+-++.-|.+. ++.|+++.+
T Consensus 130 ~l~~~~~~~~~~PcTp~avi~lL~~~-----------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs 197 (297)
T PRK14168 130 RLMIGGDEVKFLPCTPAGIQEMLVRS-----------GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHT 197 (297)
T ss_pred HHhcCCCCCCCcCCCHHHHHHHHHHh-----------CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecC
Confidence 11 111 11145666655543 3678999999999877 999999999887 678998864
No 252
>PLN02256 arogenate dehydrogenase
Probab=89.58 E-value=0.77 Score=45.66 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=33.1
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
-+++++.|||.|.+|.+++.+|.+.|.+|++++|+..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~ 70 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY 70 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH
Confidence 3567999999999999999999999989999999863
No 253
>PRK06487 glycerate dehydrogenase; Provisional
Probab=89.51 E-value=0.54 Score=47.02 Aligned_cols=37 Identities=38% Similarity=0.476 Sum_probs=34.0
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..+.||++.|+|-|..|++++..|.-+|++|..++|.
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~ 180 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP 180 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 3578999999999999999999999999999999986
No 254
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.45 E-value=22 Score=34.57 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=28.5
Q ss_pred EeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC
Q 014691 28 VPIMGESVDKMVVDMGKANASGADLVEIRLDGLK 61 (420)
Q Consensus 28 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~ 61 (420)
++.-.++.+...+-++...+.|+|++|+=+=+=+
T Consensus 18 i~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSD 51 (258)
T PRK13111 18 ITAGDPDLETSLEIIKALVEAGADIIELGIPFSD 51 (258)
T ss_pred EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 4578889999999888888899999999876643
No 255
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=89.42 E-value=0.57 Score=46.70 Aligned_cols=38 Identities=37% Similarity=0.454 Sum_probs=34.6
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+.||++.|||-|..|++++.-+.-+|++|..++|+.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~ 178 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG 178 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence 35789999999999999999999999999999999864
No 256
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=89.34 E-value=11 Score=35.02 Aligned_cols=111 Identities=19% Similarity=0.157 Sum_probs=61.1
Q ss_pred HHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 014691 38 MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV 117 (420)
Q Consensus 38 ~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDi 117 (420)
..+.++.....|+|++=+--|--......+.++.+++..++|+++ + |+ -.+++ .++.+.+.|+|.|=+
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~--~----~~--i~~~~----~v~~~~~~Gad~v~l 100 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLR--K----DF--IIDPY----QIYEARAAGADAVLL 100 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEE--C----Ce--ecCHH----HHHHHHHcCCCEEEE
Confidence 445455556779999933222111112234566676667899995 1 12 12322 466778889998864
Q ss_pred Ecc-cccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691 118 ELQ-VAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV 170 (420)
Q Consensus 118 El~-~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv 170 (420)
-.. ...+..+++. ..+.-+..+++..|+ ++| ++++.+.|+|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~------~~e----~~~~~~~g~~~i 145 (217)
T cd00331 101 IVAALDDEQLKELYELARELGMEVLVEVHD------EEE----LERALALGAKII 145 (217)
T ss_pred eeccCCHHHHHHHHHHHHHcCCeEEEEECC------HHH----HHHHHHcCCCEE
Confidence 322 1112333333 123357777888773 334 455566788887
No 257
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.30 E-value=0.62 Score=47.12 Aligned_cols=38 Identities=39% Similarity=0.492 Sum_probs=33.8
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
+.+|+|+|+|.+|..++..+...|+ +|++++++++|.+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~ 207 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLE 207 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence 3489999999999999888999998 9999999988764
No 258
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.28 E-value=0.14 Score=44.24 Aligned_cols=38 Identities=32% Similarity=0.389 Sum_probs=31.1
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhhhc
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENLQR 419 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka~~ 419 (420)
-++-|||+|-+|.+.+.+|.+.|.+ +-+++|+.+.++.
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~ 49 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAER 49 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccc
Confidence 4899999999999999999999995 5677898866553
No 259
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.22 E-value=0.55 Score=46.24 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=35.4
Q ss_pred cccCCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 377 ~~~~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
-+.+|+.|||=|+| |.||+++..++++|+++.+++.|.+-.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~ 75 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN 75 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccch
Confidence 46789999999975 699999999999999999999886544
No 260
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.20 E-value=2.3 Score=43.13 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=53.8
Q ss_pred ecCCCHHHHHHHH----HhhhhcCCCEEEEEecC------------------CCCC-Cc-----hhHHHHHHhhCC----
Q 014691 30 IMGESVDKMVVDM----GKANASGADLVEIRLDG------------------LKNF-NP-----RENIKTLIKESP---- 77 (420)
Q Consensus 30 l~~~~~~e~~~~~----~~~~~~~~D~vElRlD~------------------l~~~-~~-----~~~l~~l~~~~~---- 77 (420)
++..++++++++. +++.+.|.|.||+-..+ +... ++ .+.++.+++...
T Consensus 134 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~ 213 (353)
T cd04735 134 LTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD 213 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccC
Confidence 4555555554443 34556799999997542 2111 11 123444554444
Q ss_pred CcEEEEeccCC----CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691 78 VPTLFTYRPIW----EGGQYDGDENERVDVLRLAMELGADYIDVEL 119 (420)
Q Consensus 78 ~PiI~T~R~~~----eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl 119 (420)
.++.+-+|-.. +||. +.++..++++.+.+.|+|||+|-.
T Consensus 214 ~~~~v~~R~s~~~~~~~g~---~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 214 KDFILGYRFSPEEPEEPGI---RMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred CCceEEEEECcccccCCCC---CHHHHHHHHHHHHHcCCCEEEecc
Confidence 56778888653 3342 457778888888899999999964
No 261
>PLN02463 lycopene beta cyclase
Probab=89.18 E-value=0.46 Score=49.82 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=30.2
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
-.|+|||+|.+|.++|+.|++.|.+|.|+++.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 369999999999999999999999999998864
No 262
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.14 E-value=0.51 Score=52.46 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=33.9
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
++|.|||||-+|+.+++.++..|++|++++++.+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~ 350 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALD 350 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 6899999999999999999999999999999977643
No 263
>PRK06199 ornithine cyclodeaminase; Validated
Probab=89.12 E-value=0.47 Score=48.72 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=34.1
Q ss_pred CCEEEEEccchHHHHHHHHHHhC--CC-eEEEEeCChhhhhc
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAK--GA-RVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~--g~-~i~v~nR~~~ka~~ 419 (420)
-+++.|||+|.-|+.-+.++... .+ +|+|+||+.+++++
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~ 196 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDS 196 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence 47899999999999999998764 37 99999999999875
No 264
>PRK14852 hypothetical protein; Provisional
Probab=89.11 E-value=0.42 Score=54.24 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=64.4
Q ss_pred cEEEEEcccCCC----CCCHHHH-HHHHHHHHHcC---CCEEEEEeecCCHHHH--HHHHHHh------ccCCCCEEEEe
Q 014691 137 CKVIVSSHNYQY----TPSVEDL-SNLVARIQASG---ADIVKFATTALDITDV--ARVFQIT------VHSQVPIIGLV 200 (420)
Q Consensus 137 ~kiI~S~H~f~~----tP~~~el-~~~~~~~~~~g---aDivKia~~~~s~~D~--~~ll~~~------~~~~~p~I~~~ 200 (420)
..+|.|.|.... .++.+++ ...++...+.| |++-|+|+-+....-. ..++++. ...+-=+|+++
T Consensus 84 ~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~Vn 163 (989)
T PRK14852 84 HDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVN 163 (989)
T ss_pred CcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 456666664322 1233433 44566677777 6777888754332211 2222322 22344577777
Q ss_pred cCCcchhhhhhc-cccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 201 MGERGLISRILC-AKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 201 MG~~G~~SRi~~-~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
==..+-..|+++ ..+|..=+|..++.+ +.--.+++.++++.+.
T Consensus 164 PkH~~FY~r~l~f~~ig~~r~~p~VnaP--Avll~~dl~~~~~~~~ 207 (989)
T PRK14852 164 PKHVKFYTDIFLFKPFGEVRHYDTVDAP--AVALRIDLHEAMDELQ 207 (989)
T ss_pred cchHHHHHHHhCCccccccccCCCCCcc--hhheecCHHHHHHHHH
Confidence 777788999998 778888788888642 4445788888777665
No 265
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=89.03 E-value=8.6 Score=37.49 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=53.0
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-----------chhHHHhh-cCCC-CcEEEEE
Q 014691 76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-----------EFNDSIRG-KKPE-KCKVIVS 142 (420)
Q Consensus 76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~-----------~~~~~l~~-~~~~-~~kiI~S 142 (420)
.+.|+++.++.. +.+++.+..+.+.+.|+|+|+|-+.++. +...++.. .++. +..|++=
T Consensus 97 ~~~pvi~si~g~--------~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK 168 (289)
T cd02810 97 PGQPLIASVGGS--------SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK 168 (289)
T ss_pred CCCeEEEEeccC--------CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE
Confidence 468999999832 5577888888888889999999876542 12222221 1111 2222221
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691 143 SHNYQYTPSVEDLSNLVARIQASGADIVKFAT 174 (420)
Q Consensus 143 ~H~f~~tP~~~el~~~~~~~~~~gaDivKia~ 174 (420)
. ....+.+++.++.+.+.+.|+|.+.+..
T Consensus 169 l---~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 169 L---SPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred e---CCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1 0111345677777777778888777653
No 266
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.02 E-value=0.57 Score=46.87 Aligned_cols=39 Identities=46% Similarity=0.633 Sum_probs=34.0
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.|++|+|+|+|++|.+++..+...|++|+++.++++|.+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~ 204 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLE 204 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 478999999999999999999999999888888877653
No 267
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=89.01 E-value=0.66 Score=49.66 Aligned_cols=37 Identities=38% Similarity=0.451 Sum_probs=34.2
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..+.||++.|+|-|.+|++++..|..+|++|+.++|.
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 170 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY 170 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 4578999999999999999999999999999999984
No 268
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=89.01 E-value=1.7 Score=43.58 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=45.5
Q ss_pred CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEE
Q 014691 135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG 198 (420)
Q Consensus 135 ~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~ 198 (420)
++..|.+-.-....|-+.+...+.+.++.+.|||||++|+. +.++...+-...+..++|+|+
T Consensus 16 G~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~iPlVA 77 (346)
T TIGR00612 16 GDAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTNVPLVA 77 (346)
T ss_pred CCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCCCCEEE
Confidence 34455444333334556677888889999999999999998 777777777777777889886
No 269
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=89.01 E-value=0.52 Score=39.68 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=28.7
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
|++||+|.|..|.-++.++.++|++..+++-++++
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~ 37 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT 37 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc
Confidence 68999999999999999999999966666655544
No 270
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=88.96 E-value=1.8 Score=43.26 Aligned_cols=144 Identities=18% Similarity=0.296 Sum_probs=81.2
Q ss_pred CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEE-EecCCcchhhhhhccc
Q 014691 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG-LVMGERGLISRILCAK 214 (420)
Q Consensus 136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~-~~MG~~G~~SRi~~~~ 214 (420)
+..|.+-.-....|-+.+.-.+.+.++.+.|||||++++. +.++...+-...++.+.|+|+ |=-- -|++-..
T Consensus 19 daPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVaDiHf~-----~rla~~~ 91 (361)
T COG0821 19 DAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVADIHFD-----YRLALEA 91 (361)
T ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEEEeecc-----HHHHHHh
Confidence 4445444444556667777888899999999999999997 777877777777777999986 2111 1222110
Q ss_pred cCCcccccccCCCccCCCCCCCHHh-HHHHHhccccCCCceEEeeeccCcccc--------------ccHHHHHHHHHHc
Q 014691 215 FGGFLTFGTLENGIVSAPGQPTIKD-LLDLYNFRQMGPDTKVFGIIGKPVGHS--------------KSPILYNEAFKSV 279 (420)
Q Consensus 215 ~Gs~ltf~~~~~~~~sAPGQ~~~~~-l~~~~~~~~~~~~~~~~~v~G~pv~hS--------------~SP~ihn~~f~~~ 279 (420)
.-|+ +..- .-.||-+-..+ ..++.+...-...+-++||=.-.+..- -|-.-|-..++++
T Consensus 92 ----~~~g-~~k~-RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l 165 (361)
T COG0821 92 ----AECG-VDKV-RINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEEL 165 (361)
T ss_pred ----hhcC-cceE-EECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 1111 1111 14577776554 444443322222344555433222211 2444566778888
Q ss_pred CCCceeecccccc
Q 014691 280 GFNGVFVHLLVDD 292 (420)
Q Consensus 280 gl~~~y~~~~~~~ 292 (420)
|++-.-..+...+
T Consensus 166 ~f~~i~iS~K~Sd 178 (361)
T COG0821 166 GFDDIKVSVKASD 178 (361)
T ss_pred CCCcEEEEEEcCC
Confidence 8875444443333
No 271
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=88.95 E-value=0.49 Score=51.99 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=32.1
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
+..+|+|+|+|-+|.++|.+|.+.|++++|+.|..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34689999999999999999999999999999975
No 272
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=88.94 E-value=3.2 Score=41.90 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=51.6
Q ss_pred ecCCCHHHHHHH----HHhhhhcCCCEEEEEecC------------------CCCC-Cc-----hhHHHHHHhhCCCcEE
Q 014691 30 IMGESVDKMVVD----MGKANASGADLVEIRLDG------------------LKNF-NP-----RENIKTLIKESPVPTL 81 (420)
Q Consensus 30 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~------------------l~~~-~~-----~~~l~~l~~~~~~PiI 81 (420)
++..++++++++ ++++.+.|.|.||+-.-+ +... ++ .+.++.+++..+.|+.
T Consensus 132 mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~ 211 (337)
T PRK13523 132 MTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLF 211 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 444444444433 334456799999997663 1110 01 1234455555556655
Q ss_pred EEeccC--CCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691 82 FTYRPI--WEGGQYDGDENERVDVLRLAMELGADYIDVELQ 120 (420)
Q Consensus 82 ~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~ 120 (420)
+-++.. .+|| .+.++..++.+.+.+.|+|||+|-..
T Consensus 212 vRis~~d~~~~G---~~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 212 VRISASDYHPGG---LTVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred EEecccccCCCC---CCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 544431 2233 25678888888888889999998654
No 273
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.93 E-value=0.69 Score=47.48 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=34.1
Q ss_pred ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
..++++++|.|+ |..|+.++..|.+.|.+|+++.|+.++
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 346789999997 779999999999999999999998754
No 274
>PLN02985 squalene monooxygenase
Probab=88.91 E-value=0.52 Score=50.34 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=31.3
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
...|+|+|||-+|.+++++|++.|.+|.|+.|..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3479999999999999999999999999999974
No 275
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=88.85 E-value=1.7 Score=43.81 Aligned_cols=62 Identities=24% Similarity=0.391 Sum_probs=45.7
Q ss_pred CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEE
Q 014691 135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIG 198 (420)
Q Consensus 135 ~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~ 198 (420)
++..|.+-.-....|-+.+...+.+.++.+.|||||++|+. +.+|...+-...+..++|+|+
T Consensus 24 g~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~iPlvA 85 (360)
T PRK00366 24 GDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLPVPLVA 85 (360)
T ss_pred CCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCCCCEEE
Confidence 44455444433444556677888889999999999999998 677777777776777888886
No 276
>PRK06823 ornithine cyclodeaminase; Validated
Probab=88.85 E-value=0.54 Score=46.98 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=33.9
Q ss_pred CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~ 419 (420)
-+++.|||+|.-|+.-+.++... .. +|+|+||+.+++++
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~ 168 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEE 168 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH
Confidence 47899999999999999888654 45 89999999999875
No 277
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=88.83 E-value=5 Score=39.55 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEEccc
Q 014691 76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQV 121 (420)
Q Consensus 76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~d~iDiEl~~ 121 (420)
.+.|+++.+. |. +.+++.+..+.+.+.| +|+|+|-+.+
T Consensus 90 ~~~p~i~si~-----g~---~~~~~~~~a~~~~~aG~~D~iElN~~c 128 (301)
T PRK07259 90 FDTPIIANVA-----GS---TEEEYAEVAEKLSKAPNVDAIELNISC 128 (301)
T ss_pred cCCcEEEEec-----cC---CHHHHHHHHHHHhccCCcCEEEEECCC
Confidence 4789999997 22 4678888888888888 9999986644
No 278
>PTZ00188 adrenodoxin reductase; Provisional
Probab=88.81 E-value=0.63 Score=49.32 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=30.3
Q ss_pred CCCEEEEEccchHHHHHHHHHH-hCCCeEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~ 414 (420)
..++|+|||+|.+|-.+|..|. +.|++|+|+.|.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4679999999999999998764 6788999999864
No 279
>PLN02572 UDP-sulfoquinovose synthase
Probab=88.78 E-value=0.72 Score=48.22 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=32.0
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeC
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR 412 (420)
..++++++||.|+ |+.|+.++..|.+.|++|++++|
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 4578899999996 88999999999999999998764
No 280
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.73 E-value=0.69 Score=45.83 Aligned_cols=39 Identities=31% Similarity=0.389 Sum_probs=34.1
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka~ 418 (420)
.|.+++|+|+|++|.+++..+...|++ |++++++.+|.+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~ 202 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLE 202 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 478999999999999999999999995 999998877643
No 281
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.71 E-value=13 Score=35.46 Aligned_cols=111 Identities=18% Similarity=0.077 Sum_probs=60.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccc----------------hhHHHhh-cCCCCcE
Q 014691 76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVARE----------------FNDSIRG-KKPEKCK 138 (420)
Q Consensus 76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~----------------~~~~l~~-~~~~~~k 138 (420)
.+.|+++.+|. .+.+++.++.+...+ ++++|||-..++.. ...++.. .+..+..
T Consensus 66 ~~~~vivnv~~--------~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~P 136 (231)
T TIGR00736 66 SRALVSVNVRF--------VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKP 136 (231)
T ss_pred hcCCEEEEEec--------CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCc
Confidence 46799999994 266788888777655 69999998877542 2222221 1222333
Q ss_pred EEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH--HHHHHHHHHhccC-CCCEEE
Q 014691 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI--TDVARVFQITVHS-QVPIIG 198 (420)
Q Consensus 139 iI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~--~D~~~ll~~~~~~-~~p~I~ 198 (420)
|.+=.-- .. +..+..+..+.+.+.|+|.+-+-.+-... .|...+-++.... ++|+|+
T Consensus 137 VsvKiR~--~~-~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg 196 (231)
T TIGR00736 137 IFVKIRG--NC-IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG 196 (231)
T ss_pred EEEEeCC--CC-CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence 3322110 00 12345566677777888877665433221 2333333333333 366555
No 282
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=88.70 E-value=0.48 Score=50.76 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=31.6
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
...|+|+|||.+|.+++..|.+.|+++.|+.|..+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 35799999999999999999999999999998753
No 283
>PRK06932 glycerate dehydrogenase; Provisional
Probab=88.59 E-value=0.66 Score=46.34 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=34.2
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+.||++.|||-|..||+++.-|..+|++|..++|..
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~ 180 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG 180 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence 35789999999999999999999999999998888864
No 284
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=88.58 E-value=6.6 Score=40.50 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=85.9
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHH
Q 014691 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENER 100 (420)
Q Consensus 22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~ 100 (420)
+.|+++|.|-..|.+++++-++++.....+++|+=.-++..+.. +.++.+++. .+.|+.+.+-... ...+
T Consensus 171 ~~p~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~-~iVk~Lr~~~~~~~I~~DLK~~D--------i~~~ 241 (391)
T PRK13307 171 DPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGL-EVISKIREVRPDAFIVADLKTLD--------TGNL 241 (391)
T ss_pred ccceEEEecCCCCHHHHHHHHHhcccccceEEEECHHHHHHhCH-HHHHHHHHhCCCCeEEEEecccC--------hhhH
Confidence 45899999999999999998877644446788887777765433 356777665 4678988887532 1122
Q ss_pred HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEE-EcccCCCCCCHHHHHHHHHHHHHcCCCEEEEE
Q 014691 101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIV-SSHNYQYTPSVEDLSNLVARIQASGADIVKFA 173 (420)
Q Consensus 101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~-S~H~f~~tP~~~el~~~~~~~~~~gaDivKia 173 (420)
. .+.+.+.|+|++-+=.....+.+.... ..++.+.++++ ..|.. || .+.++.+ ..+.|++-+-
T Consensus 242 v--v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~--tp-----~e~i~~l-~~~vD~Vllh 306 (391)
T PRK13307 242 E--ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVE--DP-----VKLLESL-KVKPDVVELH 306 (391)
T ss_pred H--HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCC--CH-----HHHHHHh-hCCCCEEEEc
Confidence 1 667788899999887655543333333 33456778877 55521 22 2233333 4577887555
No 285
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.55 E-value=0.66 Score=48.28 Aligned_cols=36 Identities=42% Similarity=0.509 Sum_probs=32.3
Q ss_pred ccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCC
Q 014691 378 ALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~ 413 (420)
.+++++++|.|+ ||.|++++..|.+.|++|++++|.
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~ 243 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP 243 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457899999997 899999999999999999988884
No 286
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=88.54 E-value=0.65 Score=48.86 Aligned_cols=38 Identities=37% Similarity=0.422 Sum_probs=33.8
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
....+++|.|||+|+++.++++-|...|..|+|+.|..
T Consensus 119 ~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 119 GSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 35567999999999999999999999999999988753
No 287
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.50 E-value=0.6 Score=51.87 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=34.4
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
-++|.|||||-+|..+++.++..|.+|++++++.+..+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~ 350 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLD 350 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 36899999999999999999999999999999977654
No 288
>PRK14030 glutamate dehydrogenase; Provisional
Probab=88.43 E-value=1.2 Score=46.46 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=41.5
Q ss_pred CHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEE
Q 014691 353 DYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409 (420)
Q Consensus 353 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v 409 (420)
-++|.+.+++..+... +.+++|++|+|-|.|.+|..++..|.+.|++|+.
T Consensus 207 Tg~Gv~~~~~~~~~~~-------g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 207 TGFGALYFVHQMLETK-------GIDIKGKTVAISGFGNVAWGAATKATELGAKVVT 256 (445)
T ss_pred cHHHHHHHHHHHHHHc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 3788888887766431 3578999999999999999999999999997665
No 289
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=88.40 E-value=2.9 Score=42.82 Aligned_cols=227 Identities=16% Similarity=0.206 Sum_probs=127.4
Q ss_pred EeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHH-HHHhhCCCcE----EEEeccCCCCCCCCCCHHHHHH
Q 014691 28 VPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIK-TLIKESPVPT----LFTYRPIWEGGQYDGDENERVD 102 (420)
Q Consensus 28 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~-~l~~~~~~Pi----I~T~R~~~eGG~~~~~~~~~~~ 102 (420)
++-...++++-++.++.+.+.|||.| .|+=..-+ ...++ .+++.+++|+ ||-.=....+.....++++.++
T Consensus 69 tS~~~~d~~~E~~K~~~A~~~GADti---MDLStGgd-l~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~ 144 (423)
T TIGR00190 69 TSADTSDIEEEVEKALIAIKYGADTV---MDLSTGGD-LDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFR 144 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCC-HHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHH
Confidence 34455667777777888888999887 45432212 22233 3445555554 2221111123455678899999
Q ss_pred HHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
.++.-++.|+||+.|--....+.++.+.. .++.-=|+|. |+-++.|=.++...+++-++++.. .+-+
T Consensus 145 ~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~--~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDV-tlSL 221 (423)
T TIGR00190 145 AIEKQAKDGVDFMTIHAGVLLEYVERLKR--SGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDV-TLSL 221 (423)
T ss_pred HHHHHHHhCCCEEEEccchhHHHHHHHHh--CCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCe-eeec
Confidence 99999999999999988777777666643 2333346675 777888867676667776666541 1111
Q ss_pred --EeecCCHH---HHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcc
Q 014691 173 --ATTALDIT---DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFR 247 (420)
Q Consensus 173 --a~~~~s~~---D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~ 247 (420)
...|-... |-..+.++ +..|++-+-.|=.+ - -.+-+ .||.+++.++..-.++.
T Consensus 222 GDglRPG~i~DA~D~aQi~El----------~~lgeL~~rA~e~g----V----QvMVE----GPGHvPl~~I~~nv~lq 279 (423)
T TIGR00190 222 GDGLRPGCIADATDRAQISEL----------ITLGELVERAREAD----V----QCMVE----GPGHVPLDQIEANVRLQ 279 (423)
T ss_pred cCCcCCCccccCCcHHHHHHH----------HHHHHHHHHHHHcC----C----eEEEE----CCCCCcHHHHHHHHHHH
Confidence 12232222 33333332 12233333222221 1 11223 39999999988766643
Q ss_pred ccCCCceEEeeeccCccc------cccHHHHHHHHHHcCCCc
Q 014691 248 QMGPDTKVFGIIGKPVGH------SKSPILYNEAFKSVGFNG 283 (420)
Q Consensus 248 ~~~~~~~~~~v~G~pv~h------S~SP~ihn~~f~~~gl~~ 283 (420)
+-.-+---|||+|-=++- -.+-.|=-+.....|-|.
T Consensus 280 K~lc~~APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAdf 321 (423)
T TIGR00190 280 KELCDEAPFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGADF 321 (423)
T ss_pred HHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCe
Confidence 221122367888843321 134456556666677775
No 290
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=88.37 E-value=0.62 Score=46.27 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=34.0
Q ss_pred CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~ 419 (420)
-+++.|||+|.-|+.-+.++... .. +|.|+||+.+++++
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~ 157 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARA 157 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH
Confidence 47899999999999988888754 56 89999999999875
No 291
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=88.34 E-value=7.2 Score=36.56 Aligned_cols=117 Identities=24% Similarity=0.268 Sum_probs=74.0
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEE---EeccCCCCCCCCCCHHHHHH
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLF---TYRPIWEGGQYDGDENERVD 102 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~---T~R~~~eGG~~~~~~~~~~~ 102 (420)
+...+...+.++...-++.+.+.|..++|+-++. + +..+.++.+++..+- +++ |+. +.+
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t-~--~a~~~i~~l~~~~~~-~~vGAGTVl----------~~~---- 71 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRT-P--VALDAIRLLRKEVPD-ALIGAGTVL----------NPE---- 71 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCC-c--cHHHHHHHHHHHCCC-CEEEEEeCC----------CHH----
Confidence 4456889999999999999889999999999864 1 223446666554431 332 332 222
Q ss_pred HHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691 103 VLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT 174 (420)
Q Consensus 103 ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~ 174 (420)
-.+.+++.|++|+ |-=..+++..+.. ++.+...|--. -||++ +.++.++|+|++|+--
T Consensus 72 ~a~~a~~aGA~Fi-vsP~~~~~v~~~~---~~~~i~~iPG~----~TptE------i~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 72 QLRQAVDAGAQFI-VSPGLTPELAKHA---QDHGIPIIPGV----ATPSE------IMLALELGITALKLFP 129 (204)
T ss_pred HHHHHHHcCCCEE-ECCCCCHHHHHHH---HHcCCcEECCC----CCHHH------HHHHHHCCCCEEEECC
Confidence 3556788899998 4334444444433 23455554322 26643 5566679999999865
No 292
>PLN02740 Alcohol dehydrogenase-like
Probab=88.19 E-value=0.78 Score=46.66 Aligned_cols=39 Identities=33% Similarity=0.581 Sum_probs=34.3
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|++|+|+|+|++|.+++..+..+|+ +|+.++++.+|.+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~ 237 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFE 237 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHH
Confidence 47899999999999999999999999 7998988877654
No 293
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=88.15 E-value=0.57 Score=45.07 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=31.4
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~ 414 (420)
+..+|+|+|+||.|..++..|+..|+ +++|++.+.
T Consensus 29 ~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~ 64 (254)
T COG0476 29 KDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDT 64 (254)
T ss_pred hhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCc
Confidence 34589999999999999999999999 999999763
No 294
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.10 E-value=0.8 Score=49.06 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=34.2
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..+.||++.|+|.|.+|++++..|..+|++|+.++|+
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 172 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPY 172 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 3578999999999999999999999999999999985
No 295
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.00 E-value=0.78 Score=43.07 Aligned_cols=39 Identities=46% Similarity=0.702 Sum_probs=33.6
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+++++|.|+|++|++++..+...|.+|+++.++.++.+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~ 172 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLE 172 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 578999999999999999888889999999998876543
No 296
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=88.00 E-value=1 Score=44.16 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhC----CC-------eEEEEeCC
Q 014691 355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK----GA-------RVVIANRT 413 (420)
Q Consensus 355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~----g~-------~i~v~nR~ 413 (420)
.|++++++-. +.++++.+++++|||.+|-+++.-|... |+ +|+++||.
T Consensus 10 AgllnAlk~~-----------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 10 AGLLAALRIT-----------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred HHHHHHHHHh-----------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 3667776532 2467788999999999999988877665 76 79999975
No 297
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.94 E-value=0.95 Score=45.07 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.|.+++|.|+|+++.+++..+...|++|+.+.++.+|.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~ 203 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARR 203 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 478999999999999988888888998888888877644
No 298
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=87.93 E-value=7.5 Score=37.70 Aligned_cols=147 Identities=19% Similarity=0.206 Sum_probs=79.3
Q ss_pred hhcCCCEEEEEecCCC-------CCCc---h---hHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH-hC
Q 014691 46 NASGADLVEIRLDGLK-------NFNP---R---ENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAME-LG 111 (420)
Q Consensus 46 ~~~~~D~vElRlD~l~-------~~~~---~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~~ 111 (420)
.+.|+|++ +==|.+. +... . ...+.+.+..+.|+|+ .-. +=|.+..+.++-.+--.+.++ .|
T Consensus 29 e~aG~d~i-~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~vi-aD~--~fg~y~~~~~~av~~a~r~~~~aG 104 (254)
T cd06557 29 DEAGVDVI-LVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVV-ADM--PFGSYQTSPEQALRNAARLMKEAG 104 (254)
T ss_pred HHcCCCEE-EECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEE-EeC--CCCcccCCHHHHHHHHHHHHHHhC
Confidence 35689999 4444431 1111 1 2344555667889543 222 203344455555444444444 89
Q ss_pred CcEEEEEccc-ccchhHHHhhcCCCCcEEE------EEcccCC-------CCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Q 014691 112 ADYIDVELQV-AREFNDSIRGKKPEKCKVI------VSSHNYQ-------YTPS-VEDLSNLVARIQASGADIVKFATTA 176 (420)
Q Consensus 112 ~d~iDiEl~~-~~~~~~~l~~~~~~~~kiI------~S~H~f~-------~tP~-~~el~~~~~~~~~~gaDivKia~~~ 176 (420)
++.|-||-.. ..+.++.+. ..++.++ -..+++. .|.. .+++.+..+.+.+.|||.+=+=..+
T Consensus 105 a~aVkiEd~~~~~~~I~al~---~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~ 181 (254)
T cd06557 105 ADAVKLEGGAEVAETIRALV---DAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVP 181 (254)
T ss_pred CeEEEEcCcHHHHHHHHHHH---HcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 9999999862 122333333 2344443 2222221 1221 3556666667778999988776654
Q ss_pred CCHHHHHHHHHHhccCCCCEEEEecCCc
Q 014691 177 LDITDVARVFQITVHSQVPIIGLVMGER 204 (420)
Q Consensus 177 ~s~~D~~~ll~~~~~~~~p~I~~~MG~~ 204 (420)
. +.. -++.+..++|+|.|+-|+.
T Consensus 182 ~--~~~---~~i~~~v~iP~igiGaG~~ 204 (254)
T cd06557 182 A--ELA---KEITEALSIPTIGIGAGPD 204 (254)
T ss_pred H--HHH---HHHHHhCCCCEEEeccCCC
Confidence 2 333 3344445789999988873
No 299
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.92 E-value=0.9 Score=45.30 Aligned_cols=38 Identities=39% Similarity=0.478 Sum_probs=33.9
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENL 417 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka 417 (420)
.|.+|||+|||..|......+.-.|+ +|.+++-.+.|.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl 207 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL 207 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH
Confidence 47899999999999999999999999 999999776654
No 300
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=87.91 E-value=3.1 Score=42.77 Aligned_cols=229 Identities=19% Similarity=0.231 Sum_probs=130.4
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcE----EEE--ecc-CCCCCCCCCCHH
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT----LFT--YRP-IWEGGQYDGDEN 98 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~Pi----I~T--~R~-~~eGG~~~~~~~ 98 (420)
|-++-...++++-++.++.+.+.|||.| .|+=..-+..+.-+.+++.+++|+ ||- .+. .+.|+....+++
T Consensus 67 IGtS~~~~d~~~E~~K~~~A~~~GADti---MDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d 143 (431)
T PRK13352 67 IGTSSDISDIEEELEKAKVAVKYGADTI---MDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTED 143 (431)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHH
Confidence 3345556677788888888889999987 554332222222224455566554 221 222 234566678889
Q ss_pred HHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691 99 ERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASGAD 168 (420)
Q Consensus 99 ~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~gaD 168 (420)
+.++.++.=++.|+||+.|--....+.++.+... ++.-=|+|. |+.++.|=.++...+++-++++..
T Consensus 144 ~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~--~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDV- 220 (431)
T PRK13352 144 DLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKS--GRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDV- 220 (431)
T ss_pred HHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhc--CCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCe-
Confidence 9999999999999999999887777766666421 333336675 778889977677777776666541
Q ss_pred EEEE--EeecCCH---HHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHH
Q 014691 169 IVKF--ATTALDI---TDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL 243 (420)
Q Consensus 169 ivKi--a~~~~s~---~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~ 243 (420)
.+-+ ...|-.. .|-..+.++. ..|++-+-.|=.+ - -.+-+ .||.+++.++..-
T Consensus 221 tlSLGDglRPG~i~Da~D~aQi~El~----------~lgeL~~RA~e~g----V----QvMVE----GPGHvPl~~I~~n 278 (431)
T PRK13352 221 TLSLGDGLRPGCIADATDRAQIQELI----------TLGELVKRAREAG----V----QVMVE----GPGHVPLDQIEAN 278 (431)
T ss_pred eeeccCCcCCCccccCCcHHHHHHHH----------HHHHHHHHHHHcC----C----eEEEE----CCCCCCHHHHHHH
Confidence 1111 1222222 2333333321 1233222222221 1 11223 3999999998876
Q ss_pred Hhcc-ccCCCceEEeeeccCccc------cccHHHHHHHHHHcCCCc
Q 014691 244 YNFR-QMGPDTKVFGIIGKPVGH------SKSPILYNEAFKSVGFNG 283 (420)
Q Consensus 244 ~~~~-~~~~~~~~~~v~G~pv~h------S~SP~ihn~~f~~~gl~~ 283 (420)
.++. ++. +---|||+|-=++- -.+-.|=-+.....|-|.
T Consensus 279 v~l~K~lc-~~APfYvLGPLvTDiApGYDHIt~AIGgAiAa~~GAdf 324 (431)
T PRK13352 279 VKLQKRLC-HGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADF 324 (431)
T ss_pred HHHHHHhh-CCCCceecCccccccCCCchHHHHHHHHHHHHhcCCCe
Confidence 6643 232 22357888843321 134456666666777665
No 301
>PRK12999 pyruvate carboxylase; Reviewed
Probab=87.90 E-value=44 Score=39.46 Aligned_cols=209 Identities=13% Similarity=0.096 Sum_probs=122.5
Q ss_pred HHHHHHHHhhhhc--CCCEEEEEe----c---CCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691 36 DKMVVDMGKANAS--GADLVEIRL----D---GLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (420)
Q Consensus 36 ~e~~~~~~~~~~~--~~D~vElRl----D---~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (420)
++++.-++..... |.+.+|.=- | .+...++.+.++.+++.. +.|+-.-+|..+==|..+.++.-..+.++
T Consensus 555 ~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~ 634 (1146)
T PRK12999 555 KDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVR 634 (1146)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHH
Confidence 3344444444445 899999753 2 122335667787777654 56666667755443443445556666799
Q ss_pred HHHHhCCcEEEEEccccc-chhHHHh-hcCCCC--cEEEEEcc----cCCCCC-CHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691 106 LAMELGADYIDVELQVAR-EFNDSIR-GKKPEK--CKVIVSSH----NYQYTP-SVEDLSNLVARIQASGADIVKFATTA 176 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~~~~-~~~~~l~-~~~~~~--~kiI~S~H----~f~~tP-~~~el~~~~~~~~~~gaDivKia~~~ 176 (420)
.+.+.|+|++-|=...++ +.++... ..+..+ ..+-+||- |-..+. +.+.+.+..+++.+.|||++-|+=|+
T Consensus 635 ~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~ 714 (1146)
T PRK12999 635 EAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMA 714 (1146)
T ss_pred HHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 999999999887443322 1111111 122223 44566665 322322 45678899999999999999998777
Q ss_pred --CCHHHHHHHHHHhccC-CCCEEEE--ecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 177 --LDITDVARVFQITVHS-QVPIIGL--VMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 177 --~s~~D~~~ll~~~~~~-~~p~I~~--~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
-++.++..+.+.++.. +.|+=.. +.--++..+=+.+-.-|....=+++..- .--.||++++++...++
T Consensus 715 G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~gl-g~~tgn~~le~vv~~L~ 787 (1146)
T PRK12999 715 GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASM-SGLTSQPSLNSIVAALE 787 (1146)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhh-cCCcCCHHHHHHHHHHH
Confidence 4688888888876543 5665433 3333344444444445554444444331 23467877777655544
No 302
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=87.89 E-value=28 Score=33.91 Aligned_cols=204 Identities=16% Similarity=0.118 Sum_probs=112.6
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHHhhC--CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLIKES--PVPTLFTYRPIWEGGQYDGDENERVDVLRLAME 109 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 109 (420)
+.++.+.-++...+.|+|.||+ -++...+ .+.++.+.+.. +.+++.-.|....+-. ...+ .-++.+++
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~----~~~~~a~~ 89 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEG---GWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVK-AEED----PNLQALLE 89 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe---cCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCC-ccch----HHHHHHHh
Confidence 3444444455555679999998 2222222 22344443322 4566666676444322 1111 34667788
Q ss_pred hCCcEEEEEccccc------------chh---HHHh-hcCCCCcEEEEEc-ccCCCCC-CHHHHHHHHHHHHHcCCCEEE
Q 014691 110 LGADYIDVELQVAR------------EFN---DSIR-GKKPEKCKVIVSS-HNYQYTP-SVEDLSNLVARIQASGADIVK 171 (420)
Q Consensus 110 ~~~d~iDiEl~~~~------------~~~---~~l~-~~~~~~~kiI~S~-H~f~~tP-~~~el~~~~~~~~~~gaDivK 171 (420)
.|++.|.+-....+ +.+ .++. ..+..+.++.++. |.++.+. +.+.+.+.++++.+.|+|.+-
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~ 169 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLV 169 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 89999888543211 111 1222 2345567776643 3334433 456688999999999999988
Q ss_pred EEeec--CCHHHHHHHHHHhccC--CCCEEEEecCCcc--hhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 172 FATTA--LDITDVARVFQITVHS--QVPIIGLVMGERG--LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 172 ia~~~--~s~~D~~~ll~~~~~~--~~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
++=+. -++.++.++++.+.+. +.|+=..+=-..| ...=+.+-.-|..+.=+++..- .--.|+.+++++...++
T Consensus 170 l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~Gl-GeraGn~~~e~~~~~L~ 248 (273)
T cd07941 170 LCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGY-GERCGNANLCSIIPNLQ 248 (273)
T ss_pred EecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccc-ccccccccHHHHHHHHH
Confidence 88443 5788888888776542 2554433322222 2222333333544333444331 23478999988887775
Q ss_pred c
Q 014691 246 F 246 (420)
Q Consensus 246 ~ 246 (420)
.
T Consensus 249 ~ 249 (273)
T cd07941 249 L 249 (273)
T ss_pred h
Confidence 3
No 303
>PRK07589 ornithine cyclodeaminase; Validated
Probab=87.81 E-value=0.7 Score=46.85 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=33.2
Q ss_pred CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~ 419 (420)
-++++|||+|.-|+.-+.++... .. +|+|+||+.+++++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~ 169 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAK 169 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHH
Confidence 36899999999999988877654 56 99999999999875
No 304
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=87.67 E-value=0.65 Score=49.39 Aligned_cols=33 Identities=39% Similarity=0.511 Sum_probs=30.2
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..|+|||+|++|-++++.+++.|++|.|+.++.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999998864
No 305
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=87.60 E-value=5.1 Score=40.16 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=60.4
Q ss_pred CcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC------Cc----hhHHHHHHhhCCCcEEEEeccCCCCCC
Q 014691 23 PTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF------NP----RENIKTLIKESPVPTLFTYRPIWEGGQ 92 (420)
Q Consensus 23 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~ 92 (420)
.| +.+.|.+.+.++..+-++.+.+.|+|++|+=+-+.... +. .+.++.+++..++|+++-++..
T Consensus 100 ~p-vi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~----- 173 (325)
T cd04739 100 IP-VIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF----- 173 (325)
T ss_pred Ce-EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC-----
Confidence 45 45789999999888777777777999999998764311 11 1234445555689999998731
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691 93 YDGDENERVDVLRLAMELGADYIDVELQ 120 (420)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~d~iDiEl~ 120 (420)
+ + +..++.+.+.+.|+|.|.+--.
T Consensus 174 ~--~--~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 174 F--S--ALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred c--c--CHHHHHHHHHHcCCCeEEEEcC
Confidence 1 1 3455667777889999987544
No 306
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=87.55 E-value=20 Score=36.08 Aligned_cols=176 Identities=15% Similarity=0.195 Sum_probs=101.7
Q ss_pred CCCCcEEEEeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCC----C-CchhHHHHHHhhC--CCcEEEEeccCCCCC
Q 014691 20 RKNPTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKN----F-NPRENIKTLIKES--PVPTLFTYRPIWEGG 91 (420)
Q Consensus 20 ~~~~~~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~-~~~~~l~~l~~~~--~~PiI~T~R~~~eGG 91 (420)
.++.|.-+...... +.+++.++++++.+.|.+.+++.+..-.. . .+.+.++.+++.. +.++.+-. .+|
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDa----N~~ 199 (357)
T cd03316 124 RDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDA----NGR 199 (357)
T ss_pred CCceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEEC----CCC
Confidence 44444433222233 68999999998888999999999864210 0 1234466666544 45555432 222
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEEEcccccch---hHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691 92 QYDGDENERVDVLRLAMELGADYIDVELQVAREF---NDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD 168 (420)
Q Consensus 92 ~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~---~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD 168 (420)
| +.++-+++++..-+.+++|+ |--...+. .+.+.. ..++.|++--+.+ +.+++.+.++ .-.+|
T Consensus 200 -~--~~~~a~~~~~~l~~~~i~~i--EqP~~~~~~~~~~~l~~--~~~ipi~~dE~~~----~~~~~~~~i~---~~~~d 265 (357)
T cd03316 200 -W--DLAEAIRLARALEEYDLFWF--EEPVPPDDLEGLARLRQ--ATSVPIAAGENLY----TRWEFRDLLE---AGAVD 265 (357)
T ss_pred -C--CHHHHHHHHHHhCccCCCeE--cCCCCccCHHHHHHHHH--hCCCCEEeccccc----cHHHHHHHHH---hCCCC
Confidence 4 45566677777666777775 43332222 223332 2456666533221 2234443333 23588
Q ss_pred EEEEEeec-CCHHHHHHHHHHhccCCCCEEEEecCCcchhhhhhcccc
Q 014691 169 IVKFATTA-LDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKF 215 (420)
Q Consensus 169 ivKia~~~-~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~ 215 (420)
++-+-.+- -......++.++....++++..-+|++ | ++...+-.+
T Consensus 266 ~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~-i~~aa~~hl 311 (357)
T cd03316 266 IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-P-IGLAASLHL 311 (357)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-H-HHHHHHHHH
Confidence 88776554 458899999988888899988888865 4 444443333
No 307
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=87.55 E-value=0.67 Score=46.25 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCEEEEEccchHHHHHHHHHHh-CCC-eEEEEeCChhhhhcC
Q 014691 381 GKLFVVIGAGGAGKALAYGAKA-KGA-RVVIANRTYENLQRL 420 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~-~g~-~i~v~nR~~~ka~~L 420 (420)
.+++.|||+|.-|+.-+.++.. .+. +|+|+||++++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~ 169 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAF 169 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHH
Confidence 3689999999999998888765 567 999999999998753
No 308
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=87.51 E-value=0.7 Score=45.75 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=32.0
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+++.-|+|+|+||+|.-++--|..-|| +|.|++-+
T Consensus 71 kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd 107 (430)
T KOG2018|consen 71 KLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFD 107 (430)
T ss_pred HhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence 3567789999999999999999999999 99998754
No 309
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.49 E-value=0.9 Score=47.10 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=35.0
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..+.||++.|||.|..|+.++..+..+|++|..++|+.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~ 184 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED 184 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 45789999999999999999999999999999999864
No 310
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=87.46 E-value=23 Score=35.42 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=64.1
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC------------Cc---hhHHHHHHhhCCCcEEEEeccCCCC
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF------------NP---RENIKTLIKESPVPTLFTYRPIWEG 90 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~~~eG 90 (420)
+.+-|.+.+.+++.+-++.+...|+|.||+=..+=... ++ .+.++.+++..+.|+-+-+|...+-
T Consensus 57 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~ 136 (318)
T TIGR00742 57 VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP 136 (318)
T ss_pred EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 55889999999999888887777999999988763210 11 1223344445678998889964321
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEEEEccc
Q 014691 91 GQYDGDENERVDVLRLAMELGADYIDVELQV 121 (420)
Q Consensus 91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~ 121 (420)
. .+.+...++.+.+.+.|++.|+|--..
T Consensus 137 ~---~~~~~~~~~~~~l~~~G~~~itvHgRt 164 (318)
T TIGR00742 137 L---DSYEFLCDFVEIVSGKGCQNFIVHARK 164 (318)
T ss_pred c---chHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1 122455677888888999999987654
No 311
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=87.42 E-value=37 Score=34.79 Aligned_cols=193 Identities=16% Similarity=0.183 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhhhcCCCEEEEEecCCCCCCch--hHHHHHHhhCCCcEEEE-eccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691 35 VDKMVVDMGKANASGADLVEIRLDGLKNFNPR--ENIKTLIKESPVPTLFT-YRPIWEGGQYDGDENERVDVLRLAMELG 111 (420)
Q Consensus 35 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~--~~l~~l~~~~~~PiI~T-~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 111 (420)
.++.++-++...+.|+|.||.= ++...+. +.++.+.+....+.+.+ .|.. .+-++.+.+.|
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G---~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~a~~~g 88 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAG---FPAVSEDEKEAIKAIAKLGLNASILALNRAV-------------KSDIDASIDCG 88 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEe---CCCcChHHHHHHHHHHhcCCCeEEEEEcccC-------------HHHHHHHHhCC
Confidence 4444554555556799999974 3332322 34555543222233333 4421 12266777889
Q ss_pred CcEEEEEcccccc---------------hhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee
Q 014691 112 ADYIDVELQVARE---------------FNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT 175 (420)
Q Consensus 112 ~d~iDiEl~~~~~---------------~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~ 175 (420)
+++|.+-+..++- ...+.. .++..+..|.++.-+...+ +.+.+.+.++.+.+.|+|.+-++=+
T Consensus 89 ~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~-~~~~l~~~~~~~~~~Ga~~I~l~DT 167 (378)
T PRK11858 89 VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRT-DLDFLIEFAKAAEEAGADRVRFCDT 167 (378)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCC-CHHHHHHHHHHHHhCCCCEEEEecc
Confidence 9999987655431 111122 2345577787776554444 4678999999999999999888854
Q ss_pred c--CCHHHHHHHHHHhcc-CCCCEEEEecCCcchhh--hhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 176 A--LDITDVARVFQITVH-SQVPIIGLVMGERGLIS--RILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 176 ~--~s~~D~~~ll~~~~~-~~~p~I~~~MG~~G~~S--Ri~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
. -++.++.++++.+.. .+.|+-..+=-..|..+ =+..-.-|....=+++..- .-..|..+++++.-.++
T Consensus 168 ~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~Gl-GeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 168 VGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGL-GERAGNAALEEVVMALK 241 (378)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccc-cccccCccHHHHHHHHH
Confidence 4 468888888876543 35666555444444332 2222223433333333321 13478888877665554
No 312
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=87.41 E-value=12 Score=38.15 Aligned_cols=121 Identities=15% Similarity=0.112 Sum_probs=76.0
Q ss_pred HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEE-EEEcccc------cchhHHH----hh-cCCC
Q 014691 68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYI-DVELQVA------REFNDSI----RG-KKPE 135 (420)
Q Consensus 68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~i-DiEl~~~------~~~~~~l----~~-~~~~ 135 (420)
-+++++...+.|++.|+=.+ . |. +.++..++....+.-|+|.| |-|.-.+ ++.++.. .. ....
T Consensus 116 g~R~~lgv~~rPl~~tiiKP-~-GL---~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eT 190 (364)
T cd08210 116 GLRALLGIPERPLLCSALKP-Q-GL---SAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAET 190 (364)
T ss_pred HHHHHhCCCCCceEEEEecc-c-cC---CHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhc
Confidence 34555555689999997655 4 64 77888888888888889999 6665322 1111111 11 1122
Q ss_pred CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCC-CCEEEE
Q 014691 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ-VPIIGL 199 (420)
Q Consensus 136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~-~p~I~~ 199 (420)
+.+++..... |-+.+|+.+..+.+++.|++.+-+........-+..+ ..+.. .|+.+.
T Consensus 191 G~~~~y~~Ni---ta~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l---~~~~~~l~i~aH 249 (364)
T cd08210 191 GGRTLYAPNV---TGPPTQLLERARFAKEAGAGGVLIAPGLTGLDTFREL---AEDFDFLPILAH 249 (364)
T ss_pred CCcceEEEec---CCCHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHH---HhcCCCcEEEEc
Confidence 3344433322 2235699999999999999999999887776643333 23344 566555
No 313
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=87.40 E-value=2.2 Score=43.02 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=38.5
Q ss_pred CCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEE
Q 014691 135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH-----SQVPIIG 198 (420)
Q Consensus 135 ~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~-----~~~p~I~ 198 (420)
++..|.+-.=.-..|-+.+...+.+.++.+.|||||++|+. +.++...+-+..+. .++|++|
T Consensus 13 G~~PI~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRvavp--~~~~a~al~~I~~~l~~~g~~iPlVA 79 (359)
T PF04551_consen 13 GGAPISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRVAVP--DMEAAEALKEIKKRLRALGSPIPLVA 79 (359)
T ss_dssp TTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE---SHHHHHHHHHHHHHHHCTT-SS-EEE
T ss_pred CCCCEEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHHHHhhccCCCCCCeee
Confidence 34444443332344667777888999999999999999998 67777666666555 6889887
No 314
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=87.39 E-value=1.7 Score=41.84 Aligned_cols=52 Identities=29% Similarity=0.321 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeE-EEEe
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARV-VIAN 411 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i-~v~n 411 (420)
++|...+++..+...+ ..+++|++++|-|.|.+|+.++..|.+.|++| .|.+
T Consensus 11 g~GV~~~~~~~~~~~~------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD 63 (244)
T PF00208_consen 11 GYGVAYAIEAALEHLG------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSD 63 (244)
T ss_dssp HHHHHHHHHHHHHHTT------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcC------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 5677777766553211 13588999999999999999999999999854 4433
No 315
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=87.38 E-value=24 Score=34.20 Aligned_cols=139 Identities=22% Similarity=0.274 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHhhhhcCCCEEEEEecCC----CCCCchhH---HHHHH---h-hCCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691 33 ESVDKMVVDMGKANASGADLVEIRLDGL----KNFNPREN---IKTLI---K-ESPVPTLFTYRPIWEGGQYDGDENERV 101 (420)
Q Consensus 33 ~~~~e~~~~~~~~~~~~~D~vElRlD~l----~~~~~~~~---l~~l~---~-~~~~PiI~T~R~~~eGG~~~~~~~~~~ 101 (420)
.+.++++..+++..+.|||+|.+=...- ...++.++ +..++ + ..+.|+ .+-| .+-
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~pl--siDT------------~~~ 85 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPI--SVDT------------YRA 85 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--EEeC------------CCH
Confidence 4678889988888899999999932211 11122222 33222 2 236665 4433 123
Q ss_pred HHHHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCH---------------HHHHHHHHHHHHc
Q 014691 102 DVLRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSV---------------EDLSNLVARIQAS 165 (420)
Q Consensus 102 ~ll~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~---------------~el~~~~~~~~~~ 165 (420)
+.++.|++.|+++| |+.....++..+.+ ++.+..+|+ .|+- +.|.. +.+.+.++++.+.
T Consensus 86 ~vi~~al~~G~~iINsis~~~~~~~~~l~---~~~~~~vV~-m~~~-g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQDPAMLEVA---AEYGVPLVL-MHMR-GTPRTMQENPHYEDVVEEVLRFLEARAEELVAA 160 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCCchhHHHH---HHcCCcEEE-EeCC-CCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence 57788888898876 34333233344332 235778888 4532 34422 2255667778888
Q ss_pred CCCEEEEEeec-----CCHHHHHHHHHHhc
Q 014691 166 GADIVKFATTA-----LDITDVARVFQITV 190 (420)
Q Consensus 166 gaDivKia~~~-----~s~~D~~~ll~~~~ 190 (420)
|-+.-++..=| ++.+++..+++.+.
T Consensus 161 Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~ 190 (257)
T TIGR01496 161 GVAAERIILDPGIGFGKTPEHNLELLKHLE 190 (257)
T ss_pred CCCHHHEEEECCCCcccCHHHHHHHHHHHH
Confidence 87544554433 46777777766544
No 316
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.31 E-value=1 Score=45.60 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=34.1
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|.+++|+|+|++|.+++..+...|+ +|+.++++.+|.+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~ 224 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFE 224 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 47899999999999999998899999 8999988877654
No 317
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=87.27 E-value=0.93 Score=44.53 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=33.7
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+.+++|+|+|++|++++..+...|++|+++.++.++.+
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~ 200 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRE 200 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 467899999999999998888899999999999877643
No 318
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=87.22 E-value=0.78 Score=45.99 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~ 419 (420)
.+++.|||+|..|++-+.++... .. +|+|+||+.++++.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~ 168 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREK 168 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH
Confidence 47899999999999977777543 45 89999999999864
No 319
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=87.21 E-value=33 Score=33.95 Aligned_cols=173 Identities=18% Similarity=0.213 Sum_probs=106.0
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
++..+...+.+++.+++++..+.|.+.+.+.+..-.+ .+.+.++.+++.. +.++.+-.+ +.|+ .++-.+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~~~~-~d~~~v~~lr~~~g~~~l~vD~n-----~~~~--~~~A~~~~ 197 (316)
T cd03319 126 TDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLE-DDIERIRAIREAAPDARLRVDAN-----QGWT--PEEAVELL 197 (316)
T ss_pred eEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCChh-hHHHHHHHHHHhCCCCeEEEeCC-----CCcC--HHHHHHHH
Confidence 4445667889999999998888899999999853211 1234566666544 355555544 2243 45667777
Q ss_pred HHHHHhCCcEEEEEcccccc---hhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec-CCHH
Q 014691 105 RLAMELGADYIDVELQVARE---FNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA-LDIT 180 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl~~~~~---~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~-~s~~ 180 (420)
+...+.+++|+ |--...+ ..+++.. ...+.|+..=..+ +.+++.+. +..-++|++-+=.+- -...
T Consensus 198 ~~l~~~~l~~i--EeP~~~~d~~~~~~L~~--~~~ipIa~~E~~~----~~~~~~~~---~~~~~~d~v~~~~~~~GGi~ 266 (316)
T cd03319 198 RELAELGVELI--EQPVPAGDDDGLAYLRD--KSPLPIMADESCF----SAADAARL---AGGGAYDGINIKLMKTGGLT 266 (316)
T ss_pred HHHHhcCCCEE--ECCCCCCCHHHHHHHHh--cCCCCEEEeCCCC----CHHHHHHH---HhcCCCCEEEEeccccCCHH
Confidence 77778888887 4333222 2334432 3456777653322 22333332 333568877654444 3688
Q ss_pred HHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCc
Q 014691 181 DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGF 218 (420)
Q Consensus 181 D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ 218 (420)
+..++.++....+++++.-+|-+.+ +++..+-.+.+.
T Consensus 267 ~~~~~~~~a~~~gi~~~~~~~~~~~-i~~~a~~hl~a~ 303 (316)
T cd03319 267 EALRIADLARAAGLKVMVGCMVESS-LSIAAAAHLAAA 303 (316)
T ss_pred HHHHHHHHHHHcCCCEEEECchhhH-HHHHHHHHHHhh
Confidence 8889888888889998887776444 555555555444
No 320
>PRK09414 glutamate dehydrogenase; Provisional
Probab=87.17 E-value=1.5 Score=45.84 Aligned_cols=51 Identities=29% Similarity=0.375 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEE-e
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA-N 411 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~-n 411 (420)
+.|.+.+++..+... +.+++|++|+|.|-|.+|+.++..|.+.|++|+.+ +
T Consensus 212 g~Gv~~~~~~~~~~~-------~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKAR-------GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhc-------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 677777777665431 35789999999999999999999999999976544 5
No 321
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=87.08 E-value=2.5 Score=41.02 Aligned_cols=108 Identities=21% Similarity=0.225 Sum_probs=61.8
Q ss_pred EEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEE--Ecccc-------c-c--hhHHHhhcCCCCcEEEEEcccCCCC
Q 014691 82 FTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDV--ELQVA-------R-E--FNDSIRGKKPEKCKVIVSSHNYQYT 149 (420)
Q Consensus 82 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDi--El~~~-------~-~--~~~~l~~~~~~~~kiI~S~H~f~~t 149 (420)
+|=-|-.+||.+. +.++-.+..+..++.|+++||| |...+ + + .+..+...-+..+.+.+|.|.
T Consensus 8 ~tpdSF~dg~~~~-~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT---- 82 (257)
T TIGR01496 8 VTPDSFSDGGRFL-SVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT---- 82 (257)
T ss_pred CCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC----
Confidence 3445668899875 4445555566667889999999 32211 1 1 122222211223356678884
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecC
Q 014691 150 PSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG 202 (420)
Q Consensus 150 P~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG 202 (420)
++.+.+ +.+.+.|+|++==+..-+ .+ +++.+.++.+.|+|.|.+.
T Consensus 83 ~~~~vi----~~al~~G~~iINsis~~~-~~---~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 83 YRAEVA----RAALEAGADIINDVSGGQ-DP---AMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred CCHHHH----HHHHHcCCCEEEECCCCC-Cc---hhHHHHHHcCCcEEEEeCC
Confidence 344344 334445999876554433 23 3455566778899998774
No 322
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=86.99 E-value=27 Score=33.31 Aligned_cols=87 Identities=24% Similarity=0.320 Sum_probs=57.7
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC------C-----CchhHHHHHH---hhCCCcEEEEeccCCCC
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN------F-----NPRENIKTLI---KESPVPTLFTYRPIWEG 90 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~------~-----~~~~~l~~l~---~~~~~PiI~T~R~~~eG 90 (420)
-+.+-|.+.+.+++.+-++.+.. .+|.||+=+-+=.. . .+.+.+..++ ++.++|+.+-+|..
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g--- 149 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAG--- 149 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCC---
Confidence 35678999999999887777644 57999998775211 0 1112233222 23578988888863
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691 91 GQYDGDENERVDVLRLAMELGADYIDVELQ 120 (420)
Q Consensus 91 G~~~~~~~~~~~ll~~~~~~~~d~iDiEl~ 120 (420)
++ ++..++.+.+.+.|+|+|.+.-.
T Consensus 150 --~~---~~~~~la~~l~~aG~d~ihv~~~ 174 (233)
T cd02911 150 --VD---VDDEELARLIEKAGADIIHVDAM 174 (233)
T ss_pred --cC---cCHHHHHHHHHHhCCCEEEECcC
Confidence 22 34566777788899999988643
No 323
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=86.74 E-value=0.7 Score=53.14 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=34.2
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCC-Ce-------------EEEEeCChhhhhc
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKG-AR-------------VVIANRTYENLQR 419 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g-~~-------------i~v~nR~~~ka~~ 419 (420)
+.|+|+|||||.+|+.++..|.+.. ++ |+|++++.++|++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~ 621 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKE 621 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHH
Confidence 4679999999999999999998754 24 9999999988875
No 324
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=86.68 E-value=28 Score=33.00 Aligned_cols=191 Identities=16% Similarity=0.173 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHhhhhcCCC---EEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHH
Q 014691 32 GESVDKMVVDMGKANASGAD---LVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAM 108 (420)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~~D---~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 108 (420)
..++.++...++ ..|+| ++.+-.|........+.++.+.+..++|+++. ||-...++ - +..+
T Consensus 26 ~~d~~~~a~~~~---~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~------GGI~s~~d--~----~~~l 90 (243)
T cd04731 26 AGDPVELAKRYN---EQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVG------GGIRSLED--A----RRLL 90 (243)
T ss_pred CCCHHHHHHHHH---HCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEe------CCCCCHHH--H----HHHH
Confidence 346666665554 55888 44443332221122345666767778999965 56543222 2 2223
Q ss_pred HhCCcEEEEEccc--ccchhHHHhhcCCCCcEEEEEcccC---------------CCCCCHHHHHHHHHHHHHcCCCEEE
Q 014691 109 ELGADYIDVELQV--AREFNDSIRGKKPEKCKVIVSSHNY---------------QYTPSVEDLSNLVARIQASGADIVK 171 (420)
Q Consensus 109 ~~~~d~iDiEl~~--~~~~~~~l~~~~~~~~kiI~S~H~f---------------~~tP~~~el~~~~~~~~~~gaDivK 171 (420)
..|++.|.+=... ..+++.++... -+.-++++|.-.. +.+ ..+..+..+.+.+.|+|.+=
T Consensus 91 ~~G~~~v~ig~~~~~~p~~~~~i~~~-~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~--~~~~~~~~~~l~~~G~d~i~ 167 (243)
T cd04731 91 RAGADKVSINSAAVENPELIREIAKR-FGSQCVVVSIDAKRRGDGGYEVYTHGGRKPT--GLDAVEWAKEVEELGAGEIL 167 (243)
T ss_pred HcCCceEEECchhhhChHHHHHHHHH-cCCCCEEEEEEeeecCCCceEEEEcCCceec--CCCHHHHHHHHHHCCCCEEE
Confidence 3588988875433 34455555432 1223577775311 112 23466777888889999765
Q ss_pred EEeecCC----HHHHHHHHHHhccCCCCEEEEe-cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 172 FATTALD----ITDVARVFQITVHSQVPIIGLV-MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 172 ia~~~~s----~~D~~~ll~~~~~~~~p~I~~~-MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
+-....+ .-+...+.++....+.|+|+.+ +...-.+-+++.. -| ...+.++. +--.|++++.++++.++
T Consensus 168 v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~-~g--~dgv~vg~--al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 168 LTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE-GG--ADAALAAS--IFHFGEYTIAELKEYLA 241 (243)
T ss_pred EeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh-CC--CCEEEEeH--HHHcCCCCHHHHHHHHh
Confidence 5322221 1122222333334578987753 3333455555542 12 12233332 13478899988877654
No 325
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=86.68 E-value=1 Score=45.26 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=35.3
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.++.||++-|||.|..|++++.-++-+|++|..++|..
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~ 179 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSP 179 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCC
Confidence 56889999999999999999999998888999999986
No 326
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.68 E-value=1.1 Score=45.28 Aligned_cols=39 Identities=36% Similarity=0.564 Sum_probs=34.1
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|++|+|.|+|++|.+++..+...|+ +|++++++++|.+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~ 230 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLA 230 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence 47899999999999999998889999 7999998877754
No 327
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.66 E-value=0.83 Score=50.95 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=34.3
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
-++|.|||||-+|..+++.++..|++|++++++.+..+
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~ 372 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLD 372 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHH
Confidence 36899999999999999999999999999999987654
No 328
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.57 E-value=1 Score=44.63 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=33.4
Q ss_pred CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.|++++|.|+ |++|.+++..+..+|++|+.+.++.++.+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~ 190 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVD 190 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4789999997 99999999888899998888888877654
No 329
>PLN02712 arogenate dehydrogenase
Probab=86.50 E-value=1.2 Score=49.15 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=34.8
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
..++++++.|||.|.+|++++.+|...|.+|++++|+..
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~ 403 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY 403 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence 445678999999999999999999999999999999854
No 330
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=86.45 E-value=0.55 Score=44.04 Aligned_cols=111 Identities=23% Similarity=0.253 Sum_probs=63.6
Q ss_pred EEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc---------ccchhHHHh----hcCCCCcEEEEEcccC
Q 014691 80 TLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV---------AREFNDSIR----GKKPEKCKVIVSSHNY 146 (420)
Q Consensus 80 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~---------~~~~~~~l~----~~~~~~~kiI~S~H~f 146 (420)
+.+|-|+...||.+. ++++..+-.+..++.|+++|||=... .++-++++. ..+.....+.+|.=
T Consensus 2 lNvt~dSf~~g~~~~-~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSID-- 78 (210)
T PF00809_consen 2 LNVTPDSFSDGGRKF-SEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSID-- 78 (210)
T ss_dssp EEESCCTTTTTTCHH-HHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred EEecCCCCcccCccc-CHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEE--
Confidence 457888888988754 33334444666678899999995432 122222222 11111235666764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecC
Q 014691 147 QYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG 202 (420)
Q Consensus 147 ~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG 202 (420)
|+..+.+..-+ +.|++++ .-..+.++...++.+.++.+.|+|+|.|.
T Consensus 79 --T~~~~v~~~aL----~~g~~~i---nd~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 79 --TFNPEVAEAAL----KAGADII---NDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --ESSHHHHHHHH----HHTSSEE---EETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred --CCCHHHHHHHH----HcCcceE---EecccccccchhhhhhhcCCCEEEEEecc
Confidence 44444444433 3488764 33333333555677777778899999998
No 331
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.42 E-value=1.2 Score=44.69 Aligned_cols=39 Identities=33% Similarity=0.563 Sum_probs=33.9
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|++++|.|+|+.|.+++..+...|+ +|+.++++.+|.+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~ 215 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLE 215 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 47899999999999999998889999 6999988877654
No 332
>PTZ00367 squalene epoxidase; Provisional
Probab=86.33 E-value=0.92 Score=49.06 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
...|+|+|+|-+|.+++.+|++.|.+|.|+.|+.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3479999999999999999999999999999975
No 333
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=86.32 E-value=3.4 Score=43.87 Aligned_cols=228 Identities=17% Similarity=0.144 Sum_probs=124.5
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcE----EEEeccCCCCCCCCCCHHHHH
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT----LFTYRPIWEGGQYDGDENERV 101 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~Pi----I~T~R~~~eGG~~~~~~~~~~ 101 (420)
|-.+-..+++++-++.+.-+...|||.| .|+=..-+..+.-+.+++.+++|| ||-.=.+..|..-..+++..+
T Consensus 222 IGtS~~~s~ieeEveK~~~A~~~GADtv---MDLSTGgdi~~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~lt~e~~~ 298 (607)
T PRK09284 222 IGNSAVTSSIEEEVEKMVWATRWGADTV---MDLSTGKNIHETREWILRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFR 298 (607)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCEE---EecCCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHH
Confidence 3345566777888888888889999987 565333222222234566677665 222111233444567889999
Q ss_pred HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcCCCEEE
Q 014691 102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASGADIVK 171 (420)
Q Consensus 102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~gaDivK 171 (420)
+.++.-++.||||+.|--....+.+..+. ++..=|+|. |+.++.|-.+...++++-|+++..- +-
T Consensus 299 d~ieeQAeqGVDf~TIHaGv~~~~v~~~~----~R~tgIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~YDVt-lS 373 (607)
T PRK09284 299 DTLIEQAEQGVDYFTIHAGVLLRYVPLTA----KRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAAYDVS-FS 373 (607)
T ss_pred HHHHHHHHhCCCEEEEChhhHHHHHHHHh----CcccCcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHhCee-ee
Confidence 99999999999999997766555554442 222225564 6677888666666666666665410 01
Q ss_pred E--EeecCCHH---HHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 172 F--ATTALDIT---DVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 172 i--a~~~~s~~---D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
+ ...|-+.. |-..+.++. - +|.+++..-.. |- -.+-+ .||.+++.++..-.++
T Consensus 374 LGDGLRPG~iaDA~D~AQ~~EL~----------t---LGELt~rA~e~-gV----QVMIE----GPGHVPl~~I~~N~~l 431 (607)
T PRK09284 374 LGDGLRPGSIADANDEAQFAELE----------T---LGELTKIAWEH-DV----QVMIE----GPGHVPMHLIKENMDK 431 (607)
T ss_pred ccCCcCCCccccCCcHHHHHHHH----------H---HHHHHHHHHHc-CC----eEEEE----CCCCCcHHHHHHHHHH
Confidence 1 12232222 222222221 1 34444443221 11 11223 3999999888776554
Q ss_pred cccCCCceEEeeeccCccc------cccHHHHHHHHHHcCCCc
Q 014691 247 RQMGPDTKVFGIIGKPVGH------SKSPILYNEAFKSVGFNG 283 (420)
Q Consensus 247 ~~~~~~~~~~~v~G~pv~h------S~SP~ihn~~f~~~gl~~ 283 (420)
..-.-+---||++|-=++- -.+..|=-+.....|-+.
T Consensus 432 qk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~ 474 (607)
T PRK09284 432 QLEHCHEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAM 474 (607)
T ss_pred HHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCe
Confidence 2211122357777732221 133345555555566554
No 334
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=86.31 E-value=0.74 Score=46.99 Aligned_cols=34 Identities=38% Similarity=0.623 Sum_probs=31.3
Q ss_pred EEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
.|.|+|||=+|.|.+|+|.+.|-+|.|+.|+...
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E 80 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE 80 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEeccccc
Confidence 4899999999999999999999999999998654
No 335
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=86.31 E-value=1.3 Score=44.69 Aligned_cols=39 Identities=33% Similarity=0.533 Sum_probs=34.4
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|.+|||+|+|++|.+++..+..+|+ +|+.+.++.+|.+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~ 225 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFE 225 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence 47899999999999999999999999 7999998877654
No 336
>PLN02444 HMP-P synthase
Probab=86.24 E-value=3.8 Score=43.65 Aligned_cols=134 Identities=19% Similarity=0.166 Sum_probs=85.0
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcE----EEEeccCCCCCCCCCCHHHHH
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT----LFTYRPIWEGGQYDGDENERV 101 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~Pi----I~T~R~~~eGG~~~~~~~~~~ 101 (420)
|-.+-...++++-++.++.+...|||.| .|+=..-+..+.-+.+++.+++|| ||-.=.+..|..-..+++..+
T Consensus 227 IGtS~~~s~ie~EveK~~~A~~~GADTv---MDLSTGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~ 303 (642)
T PLN02444 227 IGNSAVTSSIEEEVYKLQWATMWGADTV---MDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFR 303 (642)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHH
Confidence 3345566778888888888889999987 565332222222234556666665 222111223444567889999
Q ss_pred HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcC
Q 014691 102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASG 166 (420)
Q Consensus 102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~g 166 (420)
+.++.-++.||||+.|--....+.++.+. ++..=|+|. |+-++.|=.+...++++-++++.
T Consensus 304 d~ieeQaeqGVDfmTIH~Gv~~~~v~~~~----~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~YD 374 (642)
T PLN02444 304 ETLIEQAEQGVDYFTIHAGVLLRYIPLTA----KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYD 374 (642)
T ss_pred HHHHHHHHhCCCEEEEChhhHHHHHHHHh----CcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHHhC
Confidence 99999999999999997766555554442 222335564 66778886666666666666654
No 337
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=86.16 E-value=1.2 Score=44.80 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=33.6
Q ss_pred cccCCCEEEEEccchHHHHHHHHHH-hCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~ 414 (420)
..+.||++.|||-|.+|++++.-|. .+|++|..++|..
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~ 179 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH 179 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 4578999999999999999999887 7899999888863
No 338
>PLN02306 hydroxypyruvate reductase
Probab=86.11 E-value=1.1 Score=46.00 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=33.7
Q ss_pred cccCCCEEEEEccchHHHHHHHHHH-hCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~ 414 (420)
..+.||++.|||.|..|++++.-|. .+|++|..++|+.
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~ 199 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 4578999999999999999999875 7899999999875
No 339
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=86.10 E-value=22 Score=34.47 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHhhhhcCCCEEEE-----EecCCCCCCchhHHHH-------HHhhCCCcEEEEeccCCCCCCCCCCHHHH
Q 014691 33 ESVDKMVVDMGKANASGADLVEI-----RLDGLKNFNPRENIKT-------LIKESPVPTLFTYRPIWEGGQYDGDENER 100 (420)
Q Consensus 33 ~~~~e~~~~~~~~~~~~~D~vEl-----RlD~l~~~~~~~~l~~-------l~~~~~~PiI~T~R~~~eGG~~~~~~~~~ 100 (420)
-+.++++.++.+..+.|||+|.+ |-+.- ..++.+++++ +....+.|+ .+-| .+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~-~i~~~~E~~rl~~~v~~i~~~~~~pl--SIDT------------~~ 85 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGAD-PVSVEEELERVIPVLEALRGELDVLI--SVDT------------FR 85 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC-CCCHHHHHHHHHHHHHHHHhcCCCcE--EEeC------------CC
Confidence 36788899898888999999999 44432 2222233333 222235553 4443 23
Q ss_pred HHHHHHHHHhCCcEEE-EEcccc-cchhHHHhhcCCCCcEEEEEcccCCCCCCH-----------HH----HHHHHHHHH
Q 014691 101 VDVLRLAMELGADYID-VELQVA-REFNDSIRGKKPEKCKVIVSSHNYQYTPSV-----------ED----LSNLVARIQ 163 (420)
Q Consensus 101 ~~ll~~~~~~~~d~iD-iEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~-----------~e----l~~~~~~~~ 163 (420)
.+.+++|++.|+++|- |..... ++..+ +.. +.+..+|+ .|+ .++|.. ++ +.+.++.+.
T Consensus 86 ~~v~e~al~~G~~iINdisg~~~~~~~~~-l~~--~~~~~vV~-m~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 160 (257)
T cd00739 86 AEVARAALEAGADIINDVSGGSDDPAMLE-VAA--EYGAPLVL-MHM-RGTPKTMQENPYYEDVVDEVLSFLEARLEAAE 160 (257)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCChHHHH-HHH--HcCCCEEE-ECC-CCCCcccccCCCcccHHHHHHHHHHHHHHHHH
Confidence 4688899999988763 655433 33333 222 34678888 454 345532 22 456667788
Q ss_pred HcCCCEEEEEe-----ecCCHHHHHHHHHHhc---cCCCCE
Q 014691 164 ASGADIVKFAT-----TALDITDVARVFQITV---HSQVPI 196 (420)
Q Consensus 164 ~~gaDivKia~-----~~~s~~D~~~ll~~~~---~~~~p~ 196 (420)
+.|-+-=||.. ..++.+++..+++.+. +.+.|+
T Consensus 161 ~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi 201 (257)
T cd00739 161 SAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV 201 (257)
T ss_pred HcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE
Confidence 88864223332 4456666666665433 335664
No 340
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.10 E-value=14 Score=34.56 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=73.0
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLR 105 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 105 (420)
+...|...+.++...-++.+.+.|..++|+-++. .+..+.++.++++.+- +++=.=| . .+. +-.+
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~t---p~a~~~I~~l~~~~~~-~~vGAGT-----V--l~~----e~a~ 70 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRT---PAALDAIRAVAAEVEE-AIVGAGT-----I--LNA----KQFE 70 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---ccHHHHHHHHHHHCCC-CEEeeEe-----C--cCH----HHHH
Confidence 3345888999999999999889999999999973 1223456666554432 3322111 1 122 2456
Q ss_pred HHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691 106 LAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT 174 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~ 174 (420)
.+++.|++|+ |-=..++++++... +.+...|=- --||++ +.++.++|+|++|+--
T Consensus 71 ~ai~aGA~Fi-vSP~~~~~vi~~a~---~~~i~~iPG----~~TptE------i~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 71 DAAKAGSRFI-VSPGTTQELLAAAN---DSDVPLLPG----AATPSE------VMALREEGYTVLKFFP 125 (201)
T ss_pred HHHHcCCCEE-ECCCCCHHHHHHHH---HcCCCEeCC----CCCHHH------HHHHHHCCCCEEEECC
Confidence 7788899987 33344555554432 234333322 125542 4556679999999865
No 341
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=86.06 E-value=7.3 Score=36.74 Aligned_cols=201 Identities=16% Similarity=0.115 Sum_probs=115.8
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHH
Q 014691 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENER 100 (420)
Q Consensus 22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~ 100 (420)
..|++=|.|-..|+++++..++++... +|+||.=-=++...- .+.++.+++.. +.+++.-..+-.-|+.
T Consensus 2 ~~p~LQvALD~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG-~~aV~~lr~~~pd~~IvAD~Kt~D~G~~-------- 71 (217)
T COG0269 2 SPPLLQVALDLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEG-MRAVRALRELFPDKIIVADLKTADAGAI-------- 71 (217)
T ss_pred CCcceEeeecccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhh-HHHHHHHHHHCCCCeEEeeeeecchhHH--------
Confidence 356777789999999999999988766 999998655544221 23566666554 6778887777544432
Q ss_pred HHHHHHHHHhCCcEEEEEcccccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691 101 VDVLRLAMELGADYIDVELQVAREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI 179 (420)
Q Consensus 101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~ 179 (420)
..+++++.|+||+-|=--.+..-+.... .+++.+..+.+=.- +.++ ..+..+..+++|+|++=+=.-
T Consensus 72 --e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~---~~~~---~~~~~~~l~~~gvd~~~~H~g---- 139 (217)
T COG0269 72 --EARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLI---GVWD---PEQRAKWLKELGVDQVILHRG---- 139 (217)
T ss_pred --HHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEee---cCCC---HHHHHHHHHHhCCCEEEEEec----
Confidence 3567888999999985544444333333 33445555544322 2222 334444454578776543221
Q ss_pred HHHHHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccccCCCceEEeee
Q 014691 180 TDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGII 259 (420)
Q Consensus 180 ~D~~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~~~~~~v~ 259 (420)
-|... . +. .-+-..+..+-++... |.. -+--|-++.+++..+... . ....++
T Consensus 140 ~D~q~---~----G~---~~~~~~l~~ik~~~~~--g~~----------vAVaGGI~~~~i~~~~~~---~---~~ivIv 191 (217)
T COG0269 140 RDAQA---A----GK---SWGEDDLEKIKKLSDL--GAK----------VAVAGGITPEDIPLFKGI---G---ADIVIV 191 (217)
T ss_pred ccHhh---c----CC---CccHHHHHHHHHhhcc--Cce----------EEEecCCCHHHHHHHhcC---C---CCEEEE
Confidence 11100 0 00 0001112233333321 110 123455888888866543 2 368899
Q ss_pred ccCccccccHHHH
Q 014691 260 GKPVGHSKSPILY 272 (420)
Q Consensus 260 G~pv~hS~SP~ih 272 (420)
|..|.+|..|.=-
T Consensus 192 GraIt~a~dp~~~ 204 (217)
T COG0269 192 GRAITGAKDPAEA 204 (217)
T ss_pred CchhcCCCCHHHH
Confidence 9999999998743
No 342
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=85.98 E-value=0.92 Score=47.49 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=29.2
Q ss_pred CEEEEEccchHHHHHHHHHHhC--CCeEEEEeCC
Q 014691 382 KLFVVIGAGGAGKALAYGAKAK--GARVVIANRT 413 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~--g~~i~v~nR~ 413 (420)
..|+|||+|-+|.+++|.|++. |.+|+|+.+.
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 3699999999999999999998 7899999975
No 343
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=85.96 E-value=32 Score=32.60 Aligned_cols=143 Identities=21% Similarity=0.175 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691 32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG 111 (420)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 111 (420)
..|.+++.+-++++.+.++..|=+.-.+.+ ..+..+..+++. |.|+=.-..|.. .-+.+..-.+.+++.|
T Consensus 18 ~~t~~~i~~~~~~A~~~~~~avcv~p~~v~------~a~~~l~~~~v~-v~tVigFP~G~~---~~~~K~~e~~~Ai~~G 87 (221)
T PRK00507 18 EATEEDIDKLCDEAKEYGFASVCVNPSYVK------LAAELLKGSDVK-VCTVIGFPLGAN---TTAVKAFEAKDAIANG 87 (221)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHHHH------HHHHHhCCCCCe-EEEEecccCCCC---hHHHHHHHHHHHHHcC
Confidence 345777777777777666555544332221 223333333433 444444444432 2356666677888999
Q ss_pred CcEEEEEcccc-------cchhHHHh---hc-CCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEee----c
Q 014691 112 ADYIDVELQVA-------REFNDSIR---GK-KPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT----A 176 (420)
Q Consensus 112 ~d~iDiEl~~~-------~~~~~~l~---~~-~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~----~ 176 (420)
++-||+=++.. +.+.+++. .. +..-.|||+---+. +.+++....+-+.+.|+|++|--+- .
T Consensus 88 A~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L----~~e~i~~a~~~~~~agadfIKTsTG~~~~g 163 (221)
T PRK00507 88 ADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLL----TDEEKVKACEIAKEAGADFVKTSTGFSTGG 163 (221)
T ss_pred CceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCC
Confidence 99999866542 11222232 11 22346777653322 4566777777777888888886543 2
Q ss_pred CCHHHHHHHHHH
Q 014691 177 LDITDVARVFQI 188 (420)
Q Consensus 177 ~s~~D~~~ll~~ 188 (420)
.+.+|+..+.+.
T Consensus 164 at~~~v~~m~~~ 175 (221)
T PRK00507 164 ATVEDVKLMRET 175 (221)
T ss_pred CCHHHHHHHHHH
Confidence 456666555444
No 344
>PLN02334 ribulose-phosphate 3-epimerase
Probab=85.88 E-value=32 Score=32.49 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc----hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCH
Q 014691 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP----RENIKTLIKESPVPTLFTYRPIWEGGQYDGDE 97 (420)
Q Consensus 22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~ 97 (420)
..-.|+.++...+...+.++++++...|+|++=+|+---..... .+.++.+++..+.|+-+++=. .++
T Consensus 6 ~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv--------~~p 77 (229)
T PLN02334 6 NDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMV--------TNP 77 (229)
T ss_pred CCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEecc--------CCH
Confidence 34457777777887888889999888899999998654321111 135666665556665555442 134
Q ss_pred HHHHHHHHHHHHhCCcEE--EEEcccccchhHHHhhcCCCCcEEEEEcc
Q 014691 98 NERVDVLRLAMELGADYI--DVELQVAREFNDSIRGKKPEKCKVIVSSH 144 (420)
Q Consensus 98 ~~~~~ll~~~~~~~~d~i--DiEl~~~~~~~~~l~~~~~~~~kiI~S~H 144 (420)
+.|.+. +.+.|+|+| =+|-...+.....+...+..+.++-+|.|
T Consensus 78 ~d~~~~---~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~ 123 (229)
T PLN02334 78 EDYVPD---FAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLN 123 (229)
T ss_pred HHHHHH---HHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEEC
Confidence 555554 466799999 55510111122222222345778888887
No 345
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=85.74 E-value=13 Score=37.52 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=86.1
Q ss_pred EEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEE---------Ecc--c----ccchhHHHhhcCCCCcEEEEEc
Q 014691 82 FTYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDV---------ELQ--V----AREFNDSIRGKKPEKCKVIVSS 143 (420)
Q Consensus 82 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~d~iDi---------El~--~----~~~~~~~l~~~~~~~~kiI~S~ 143 (420)
.|+| ||++ +..+.++..++.+...+.|+++|.+ ... . +.+.++.+... ..++++.+=.
T Consensus 9 ~TLR---DG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll 84 (337)
T PRK08195 9 VTLR---DGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALL 84 (337)
T ss_pred CCCC---CcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEe
Confidence 3566 6664 4567789999999999999999888 221 1 23444555432 2456664311
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEE-ecCCcchh---hhhhcc--ccCC
Q 014691 144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGL-VMGERGLI---SRILCA--KFGG 217 (420)
Q Consensus 144 H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~-~MG~~G~~---SRi~~~--~~Gs 217 (420)
.|..... +-++.+.+.|.|++++++..+..+......+..+.....+.+. .|...-.. .+++.. -+|.
T Consensus 85 -----~pg~~~~-~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga 158 (337)
T PRK08195 85 -----LPGIGTV-DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGA 158 (337)
T ss_pred -----ccCcccH-HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCC
Confidence 1212122 3467788899999999998887777766777666655544443 33221111 111111 1343
Q ss_pred cccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 218 FLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 218 ~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
... ++.+ .-|.++..++.++++.
T Consensus 159 ~~i--~i~D----T~G~~~P~~v~~~v~~ 181 (337)
T PRK08195 159 QCV--YVVD----SAGALLPEDVRDRVRA 181 (337)
T ss_pred CEE--EeCC----CCCCCCHHHHHHHHHH
Confidence 221 2222 3577777787777764
No 346
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=85.66 E-value=1.1 Score=46.90 Aligned_cols=32 Identities=38% Similarity=0.407 Sum_probs=28.6
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEe
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIAN 411 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~n 411 (420)
.+++++|||||-+|.++|..|.+.|+ ++.|+-
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE 52 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILE 52 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEE
Confidence 45689999999999999999999998 888874
No 347
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=85.62 E-value=1 Score=47.21 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
.+++||||+|-+|-.++..|++.|++++++.+++.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 47899999999999999999999999999987653
No 348
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.60 E-value=1.2 Score=44.80 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=33.1
Q ss_pred CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.|.+++|.|+ |++|.+++..++..|++|+.+.++.+|.+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD 197 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 4789999998 99999999888899998888888776644
No 349
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=85.51 E-value=35 Score=33.00 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=109.6
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG- 111 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~- 111 (420)
+.++.+.-++...+.|+|.||+=.-... ..+.+.++.+.+.. +.++..-+|.. .+-++.+++.+
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~-~~~~~~~~~l~~~~~~~~~~~l~r~~-------------~~~v~~a~~~~~ 83 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAAS-PGDFEAVKRIAREVLNAEICGLARAV-------------KKDIDAAAEALK 83 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHHHHHhCCCCEEEEEccCC-------------HhhHHHHHHhCC
Confidence 4455555555556779999998432211 12234455554422 45555555632 12245566666
Q ss_pred ---CcEEEEEccccc------------chhH----HHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Q 014691 112 ---ADYIDVELQVAR------------EFND----SIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKF 172 (420)
Q Consensus 112 ---~d~iDiEl~~~~------------~~~~----~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKi 172 (420)
++.|.+=...++ +.++ .+...+..+.+|..+.=+...+ +.+.+.+.++++.++|+|.+-+
T Consensus 84 ~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 84 PAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRT-DLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred CCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 888888543311 1111 2222344566666554443332 4678899999999999998887
Q ss_pred Eeec--CCHHHHHHHHHHhccC-C---CCEEEEecCCcch--hhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHH
Q 014691 173 ATTA--LDITDVARVFQITVHS-Q---VPIIGLVMGERGL--ISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLY 244 (420)
Q Consensus 173 a~~~--~s~~D~~~ll~~~~~~-~---~p~I~~~MG~~G~--~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~ 244 (420)
+=+. -+++++..+++.+++. + .|+-..+=-..|. ..=+..-.-|..+.=+++.. -.-+.|.++.+++...+
T Consensus 163 ~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~G-lG~~aGN~~tE~lv~~L 241 (268)
T cd07940 163 PDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTING-IGERAGNAALEEVVMAL 241 (268)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeec-cccccccccHHHHHHHH
Confidence 7554 4689999988876553 2 5554433222332 22222222344333344432 12457889988887666
Q ss_pred hc
Q 014691 245 NF 246 (420)
Q Consensus 245 ~~ 246 (420)
+.
T Consensus 242 ~~ 243 (268)
T cd07940 242 KT 243 (268)
T ss_pred Hh
Confidence 54
No 350
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.50 E-value=1.1 Score=49.76 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=32.8
Q ss_pred CCEEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhhh
Q 014691 381 GKLFVVIGAGGAGKALAYGAK-AKGARVVIANRTYENL 417 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~~ka 417 (420)
-++|.|||||-+|+.+++.++ ..|++|++++++.+..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l 346 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGI 346 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 368999999999999999998 7799999999987643
No 351
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.50 E-value=1.4 Score=43.80 Aligned_cols=39 Identities=36% Similarity=0.399 Sum_probs=33.4
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|++++|+|+|++|.+++..+...|+ .|+++.++.+|.+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~ 199 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLA 199 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence 47899999999999999998999999 5788888877643
No 352
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=85.43 E-value=1.1 Score=45.13 Aligned_cols=40 Identities=33% Similarity=0.399 Sum_probs=35.6
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
..+.||+|.|+|.|..|++++.-|..+|+.|.-.+|+..+
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~ 197 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLP 197 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCc
Confidence 5678999999999999999999999999888888887543
No 353
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=85.42 E-value=0.81 Score=50.14 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.7
Q ss_pred CEEEEEccchHHHHHHHHHHhC-CCeEEEEeCChh
Q 014691 382 KLFVVIGAGGAGKALAYGAKAK-GARVVIANRTYE 415 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~-g~~i~v~nR~~~ 415 (420)
..|+|+|||.+|.+++..|++. |+++.|+.|..+
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4799999999999999999995 999999998754
No 354
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=85.42 E-value=1.4 Score=44.29 Aligned_cols=39 Identities=28% Similarity=0.526 Sum_probs=34.2
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|.+|+|.|+|++|.+++..+...|+ +|+++.|+.++.+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~ 226 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFE 226 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 47899999999999999998889999 8999998877644
No 355
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=85.41 E-value=1.2 Score=49.49 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.1
Q ss_pred CEEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhhh
Q 014691 382 KLFVVIGAGGAGKALAYGAK-AKGARVVIANRTYENL 417 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~-~~g~~i~v~nR~~~ka 417 (420)
++|.|||||-+|+.+++.++ ..|++|++++++++..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l 341 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGI 341 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 68999999999999999888 5899999999997643
No 356
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=85.33 E-value=1.3 Score=43.98 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=32.7
Q ss_pred CCEEEEEcc-chHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 381 GKLFVVIGA-GGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 381 ~k~vlviGa-GGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
|+++||.|+ |++|.+++..+..+|+ +|+.+.++.++.+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~ 194 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQ 194 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 379999997 9999999988888999 8999988877644
No 357
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=85.28 E-value=20 Score=36.13 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 014691 32 GESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG 111 (420)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 111 (420)
-.|.+..++|++++.+.|||+|=+-+.-. +..+.+..+.+.+++|++.-+- |+ +.+-..+++.|
T Consensus 30 T~Dv~atv~QI~~L~~aGceiVRvavp~~---~~A~al~~I~~~~~iPlVADIH-------Fd------~~lAl~a~~~g 93 (346)
T TIGR00612 30 TIDIDSTVAQIRALEEAGCDIVRVTVPDR---ESAAAFEAIKEGTNVPLVADIH-------FD------YRLAALAMAKG 93 (346)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEcCCCH---HHHHhHHHHHhCCCCCEEEeeC-------CC------cHHHHHHHHhc
Confidence 34677888999999999999986655432 2345678888888999997654 21 11222344555
Q ss_pred CcEEEEEccc--ccchhHHHh-hcCCCCcEE-EEEcc---------cCC-CCCC--HHHHHHHHHHHHHcCCCEEEEEee
Q 014691 112 ADYIDVELQV--AREFNDSIR-GKKPEKCKV-IVSSH---------NYQ-YTPS--VEDLSNLVARIQASGADIVKFATT 175 (420)
Q Consensus 112 ~d~iDiEl~~--~~~~~~~l~-~~~~~~~ki-I~S~H---------~f~-~tP~--~~el~~~~~~~~~~gaDivKia~~ 175 (420)
+|-|=|-=.. .++.++.+. .++..++.| |.-.| .+. .||. .+...+.++-+.++|-+=+|+-..
T Consensus 94 ~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K 173 (346)
T TIGR00612 94 VAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK 173 (346)
T ss_pred cCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 6655553211 122233333 223333333 33222 011 2441 133455566677788888888888
Q ss_pred cCCHHHHHHHHHHhcc-CCCC
Q 014691 176 ALDITDVARVFQITVH-SQVP 195 (420)
Q Consensus 176 ~~s~~D~~~ll~~~~~-~~~p 195 (420)
+.+..+..+..+++.+ .+.|
T Consensus 174 sSdv~~~i~ayr~la~~~dyP 194 (346)
T TIGR00612 174 ASDVAETVAAYRLLAERSDYP 194 (346)
T ss_pred cCCHHHHHHHHHHHHhhCCCC
Confidence 8888887777766543 3555
No 358
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=85.21 E-value=1.4 Score=44.26 Aligned_cols=118 Identities=20% Similarity=0.269 Sum_probs=68.5
Q ss_pred HHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHHhcceeEEEEe--ccCCeEE-----EEecC-----HHHHHHHH
Q 014691 294 AKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRR--QSDGKLF-----GYNTD-----YVGAISAI 361 (420)
Q Consensus 294 ~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~iGAvNTi~~~--~~~g~l~-----G~NTD-----~~G~~~~l 361 (420)
++..+.+++.++... ...|...+++..+..|--.++.-.-||.|-.. ...| +. |.|+. ..|.+-++
T Consensus 37 ~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~g-i~V~nap~~na~~vAE~~~~~~L~~ 114 (324)
T COG0111 37 EELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRG-ILVVNAPGGNAISVAELVLALLLAL 114 (324)
T ss_pred HHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcC-CEEEeCCCcchHHHHHHHHHHHHHH
Confidence 344555666666666 55666777777665444333333334433211 0011 22 33444 23343333
Q ss_pred Hhhhcc-----CCCCCCC---cccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 362 EDGLRG-----RLNVSGG---VSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 362 ~~~~~~-----~~~~~~~---~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
.+.+.. +.+.|.. .+..+.||++-|||.|..|+.++.-|..+|++|..+++.
T Consensus 115 ~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~ 174 (324)
T COG0111 115 ARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPY 174 (324)
T ss_pred hcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence 332110 1122322 234678999999999999999999999999999999993
No 359
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=85.19 E-value=1.6 Score=40.53 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=32.0
Q ss_pred cccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEEe
Q 014691 377 SALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIAN 411 (420)
Q Consensus 377 ~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~n 411 (420)
.+++||+|+|||-+. +|+-++.-|.+.|+.|++++
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~ 93 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVD 93 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEe
Confidence 478999999999888 99999999999999999994
No 360
>PRK02227 hypothetical protein; Provisional
Probab=85.15 E-value=8 Score=37.06 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHhCCcEEEEEcc-------cccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec-C
Q 014691 106 LAMELGADYIDVELQ-------VAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA-L 177 (420)
Q Consensus 106 ~~~~~~~d~iDiEl~-------~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~-~ 177 (420)
.+++.|+|+||+--- .+...++++...-.++..|=...=|+...| .++......+...|+|+||+-.+. .
T Consensus 15 ~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p--~~~~~aa~~~a~~GvDyVKvGl~~~~ 92 (238)
T PRK02227 15 EALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKP--GTISLAALGAAATGADYVKVGLYGGK 92 (238)
T ss_pred HHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCc--hHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 356778999999431 234456666643233332322233443333 678888888889999999999885 4
Q ss_pred CHHHHHHHHHH----hcc--CCCCEEEEecCCcc
Q 014691 178 DITDVARVFQI----TVH--SQVPIIGLVMGERG 205 (420)
Q Consensus 178 s~~D~~~ll~~----~~~--~~~p~I~~~MG~~G 205 (420)
+.++....++- .+. .+..+++......+
T Consensus 93 ~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~ 126 (238)
T PRK02227 93 TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAH 126 (238)
T ss_pred cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccc
Confidence 44455554432 222 25677877776655
No 361
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=85.10 E-value=1.5 Score=47.33 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=32.3
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhC----CCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAK----GARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~----g~~i~v~nR~~ 414 (420)
.+.+.++|.|||+|=+|.|+|+.|++. |.+|+|+.+..
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~ 59 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD 59 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC
Confidence 345678999999999999999999986 46999998764
No 362
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=85.07 E-value=13 Score=35.41 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=51.8
Q ss_pred EeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc-------ch---hHHHhhcCCCCcEEEEEcccCCCCCCH
Q 014691 83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR-------EF---NDSIRGKKPEKCKVIVSSHNYQYTPSV 152 (420)
Q Consensus 83 T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~-------~~---~~~l~~~~~~~~kiI~S~H~f~~tP~~ 152 (420)
|+|.-.|--.+..+.++..++++...+.|+++|++=.-... +. ++.+... ..+.++.+ +. +..
T Consensus 4 tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~-~~~~~~~~--l~---~~~- 76 (265)
T cd03174 4 TLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKL-VPNVKLQA--LV---RNR- 76 (265)
T ss_pred CCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhc-cCCcEEEE--Ec---cCc-
Confidence 67743333334557789999999999999999887544322 22 2333221 11345422 11 111
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeecC
Q 014691 153 EDLSNLVARIQASGADIVKFATTAL 177 (420)
Q Consensus 153 ~el~~~~~~~~~~gaDivKia~~~~ 177 (420)
.+.++.+.+.|+|.+.+.....
T Consensus 77 ---~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 77 ---EKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred ---hhhHHHHHhCCcCEEEEEEecC
Confidence 4457777788899999888766
No 363
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=85.06 E-value=1.9 Score=44.45 Aligned_cols=127 Identities=24% Similarity=0.340 Sum_probs=75.2
Q ss_pred eccCccccccHHHHHHHHHHcCCCceeecccc---ccHHHHHHHhcCCCCCEEEEc---ccchHHHHhhhhcccHHHHHh
Q 014691 259 IGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV---DDIAKFFQTYSSNDFAGFSCT---IPHKEAAVKCCDEVDTVAKSI 332 (420)
Q Consensus 259 ~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~~~~~~~~G~~VT---~P~K~~i~~~~d~l~~~A~~i 332 (420)
-|-||+--+. .+|.++ -|+|..=..+++ +++.++++.+ .+.|.|.|+- -|.+..+-..+.+
T Consensus 98 ag~pVmeGKa-~Lfk~f---aGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~-------- 164 (432)
T COG0281 98 AGKPVMEGKA-VLFKAF---AGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRY-------- 164 (432)
T ss_pred cCcchhhhHH-HHHHHh---cCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhh--------
Confidence 3445554444 233321 356644344444 3566677666 6789999863 4555444333332
Q ss_pred cceeEEEEeccCCeEEEEecC-HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCC---eEE
Q 014691 333 GAVNCIIRRQSDGKLFGYNTD-YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA---RVV 408 (420)
Q Consensus 333 GAvNTi~~~~~~g~l~G~NTD-~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~---~i~ 408 (420)
-.|.=++. |. .+|.-.= -.|++++|+-. +..++..++++.|||-+|-+++..|...|+ +|+
T Consensus 165 -~~~IPvFh--DD-qqGTaiv~lA~llnalk~~-----------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~ 229 (432)
T COG0281 165 -RMNIPVFH--DD-QQGTAIVTLAALLNALKLT-----------GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF 229 (432)
T ss_pred -cCCCCccc--cc-ccHHHHHHHHHHHHHHHHh-----------CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE
Confidence 12222332 22 1333222 33445555432 356788899999999999999999999998 699
Q ss_pred EEeCC
Q 014691 409 IANRT 413 (420)
Q Consensus 409 v~nR~ 413 (420)
+++|.
T Consensus 230 ~~D~~ 234 (432)
T COG0281 230 VVDRK 234 (432)
T ss_pred EEecC
Confidence 99974
No 364
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=85.03 E-value=13 Score=36.32 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=66.4
Q ss_pred HHHHHhhCCCc-EEEEeccCCCCCCCCCCHHHHHHHHHHHHH-hCCcEEEEEccc-ccchhHHHhhcCCCCcEEEE----
Q 014691 69 IKTLIKESPVP-TLFTYRPIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQV-AREFNDSIRGKKPEKCKVIV---- 141 (420)
Q Consensus 69 l~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~~~d~iDiEl~~-~~~~~~~l~~~~~~~~kiI~---- 141 (420)
.+.+.+..+.| ++.-. . - |.+..+.++-.+--.+.++ .|++.|-||-.. ..+.++.+. ..++.|+.
T Consensus 67 ~~~V~r~~~~p~vvaD~--p-f-g~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~---~agIpV~gHiGL 139 (264)
T PRK00311 67 TKAVARGAPRALVVADM--P-F-GSYQASPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLV---ERGIPVMGHLGL 139 (264)
T ss_pred HHHHHhcCCCCcEEEeC--C-C-CCccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHH---HCCCCEeeeecc
Confidence 44455556776 44333 1 1 3444455543333333344 799999999752 122333333 34555541
Q ss_pred ---EcccC------CCCCC-HHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCCc
Q 014691 142 ---SSHNY------QYTPS-VEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGER 204 (420)
Q Consensus 142 ---S~H~f------~~tP~-~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~ 204 (420)
|.|.+ ..|.. .+++.+..+.+.+.|||.+=+=..+. +.. .++.+..++|+|.|+-|+.
T Consensus 140 ~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~--~~~---~~i~~~l~iP~igiGaG~~ 207 (264)
T PRK00311 140 TPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVPA--ELA---KEITEALSIPTIGIGAGPD 207 (264)
T ss_pred cceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH--HHH---HHHHHhCCCCEEEeccCCC
Confidence 11111 11221 24566666667789999887655532 333 2334445789999988874
No 365
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=85.02 E-value=28 Score=33.31 Aligned_cols=123 Identities=16% Similarity=0.223 Sum_probs=77.8
Q ss_pred HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc---------------cchhHHHh--
Q 014691 68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA---------------REFNDSIR-- 130 (420)
Q Consensus 68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---------------~~~~~~l~-- 130 (420)
.++.+.+...+|+++-... |. - +.+...+..+..++.|++.|=||-... ++..+.+.
T Consensus 60 ~~~~I~~~~~~Pv~~D~~~----G~-g-~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa 133 (243)
T cd00377 60 AVRRIARAVDLPVIADADT----GY-G-NALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAA 133 (243)
T ss_pred HHHHHHhhccCCEEEEcCC----CC-C-CHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHH
Confidence 3445556678999988775 32 2 445666778888899999999976542 22333343
Q ss_pred -hcCCC--CcEEEEEccc-CCCC-CCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEec
Q 014691 131 -GKKPE--KCKVIVSSHN-YQYT-PSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVM 201 (420)
Q Consensus 131 -~~~~~--~~kiI~S~H~-f~~t-P~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~M 201 (420)
.+..+ ..-|| -.-| +... .+.+|..++.+...+.|||.+=+- .+.+.++..++.+ ..+.|++.+.+
T Consensus 134 ~~a~~~~~~~~Ii-ARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~-~~~~~~~~~~~~~---~~~~Pl~~~~~ 204 (243)
T cd00377 134 RDARDDLPDFVII-ARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE-GLKDPEEIRAFAE---APDVPLNVNMT 204 (243)
T ss_pred HHHHhccCCeEEE-EEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC-CCCCHHHHHHHHh---cCCCCEEEEec
Confidence 22222 34444 4433 3222 467888999999999999998764 4456666655444 45778877643
No 366
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=84.95 E-value=1.3 Score=44.29 Aligned_cols=39 Identities=41% Similarity=0.524 Sum_probs=34.3
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|+++||.|+|++|.+++..+...|+ +|+++.++.++.+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~ 216 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLE 216 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 57899999999999999999999999 9999988876643
No 367
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=84.73 E-value=1.8 Score=42.73 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=36.1
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhcC
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQRL 420 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~L 420 (420)
.+++=-||-|-+|.+.+..|...|++|+|+|||.++.+++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f 74 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF 74 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH
Confidence 4677789999999999999999999999999999988653
No 368
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=84.61 E-value=1.5 Score=43.22 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.|.++||.|+ |++|.+++..+...|++|+.+.++.++.+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~ 177 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVA 177 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4789999995 89999999888889998888888776654
No 369
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=84.58 E-value=15 Score=35.42 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=63.9
Q ss_pred EEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEEEc---------------ccccchhHHHhhcCCCCcEEEEEc
Q 014691 82 FTYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDVEL---------------QVAREFNDSIRGKKPEKCKVIVSS 143 (420)
Q Consensus 82 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~d~iDiEl---------------~~~~~~~~~l~~~~~~~~kiI~S~ 143 (420)
.|+| ||++ +..+.++..++++...+.|+++|++=. ..+.+.++.+... ..++++.+-.
T Consensus 6 ~TlR---DG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~ 81 (263)
T cd07943 6 VTLR---DGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLL 81 (263)
T ss_pred CCCC---cCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEe
Confidence 4667 5554 456778999999999999999988741 0122344445332 2456764322
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCC
Q 014691 144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV 194 (420)
Q Consensus 144 H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~ 194 (420)
+. ..+.. +-++++.+.|.|++.++...++........+..+....
T Consensus 82 ~~--~~~~~----~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~ 126 (263)
T cd07943 82 LP--GIGTV----DDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGM 126 (263)
T ss_pred cC--CccCH----HHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCC
Confidence 21 11122 33677778899999999887776666555555554443
No 370
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=84.51 E-value=1.1 Score=48.90 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=28.4
Q ss_pred EEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
.|||||+|++|.+++..+++.|++|.|+...
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 5999999999999999999999999998764
No 371
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=84.46 E-value=1.2 Score=47.72 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=32.6
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..++||+|||||+|-.|-=++..|.....+|++.-|+.
T Consensus 179 ~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 179 EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 56899999999999999999999988766999888864
No 372
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=84.44 E-value=37 Score=33.45 Aligned_cols=79 Identities=15% Similarity=0.026 Sum_probs=54.3
Q ss_pred EeecCC-CHHHHHHHHHhhhhcCCCEEEEEecCCCCC--CchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 28 VPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNF--NPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 28 v~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~--~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
+-|... +.++..+.++.+...++|.|++-+|..... ...+.++.+++..+.|+++-.. .+. +..
T Consensus 120 ~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v---------~s~----~~a 186 (299)
T cd02809 120 FQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI---------LTP----EDA 186 (299)
T ss_pred EEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec---------CCH----HHH
Confidence 344443 777777777777778999999999986421 1124677777777899988743 122 235
Q ss_pred HHHHHhCCcEEEEEc
Q 014691 105 RLAMELGADYIDVEL 119 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl 119 (420)
+.+.+.|+|+|++.-
T Consensus 187 ~~a~~~G~d~I~v~~ 201 (299)
T cd02809 187 LRAVDAGADGIVVSN 201 (299)
T ss_pred HHHHHCCCCEEEEcC
Confidence 667788999999963
No 373
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.42 E-value=1.1 Score=48.16 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=35.1
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
.+++|+|.|..|+.++..|.+.|.++++++.|++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~ 455 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDE 455 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHH
Confidence 47999999999999999999999999999999998764
No 374
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=84.40 E-value=11 Score=35.15 Aligned_cols=121 Identities=26% Similarity=0.247 Sum_probs=71.5
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVL 104 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 104 (420)
.|...+...+.+++...++.+.+.|..++|+-+.- .+..+.++.++++.+- +++=.=| . .+. +-.
T Consensus 9 ~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t---~~a~~~I~~l~~~~p~-~~vGAGT-----V--~~~----e~a 73 (196)
T PF01081_consen 9 KIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRT---PNALEAIEALRKEFPD-LLVGAGT-----V--LTA----EQA 73 (196)
T ss_dssp SEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTS---TTHHHHHHHHHHHHTT-SEEEEES---------SH----HHH
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCC---ccHHHHHHHHHHHCCC-CeeEEEe-----c--cCH----HHH
Confidence 45667889999999999998889999999999874 1223455555554432 3322111 1 122 245
Q ss_pred HHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691 105 RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT 174 (420)
Q Consensus 105 ~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~ 174 (420)
+.+++.|++|+ +-=..++++.+... +.+..+|=.. -||++ +.++.++|+|++|+--
T Consensus 74 ~~a~~aGA~Fi-vSP~~~~~v~~~~~---~~~i~~iPG~----~TptE------i~~A~~~G~~~vK~FP 129 (196)
T PF01081_consen 74 EAAIAAGAQFI-VSPGFDPEVIEYAR---EYGIPYIPGV----MTPTE------IMQALEAGADIVKLFP 129 (196)
T ss_dssp HHHHHHT-SEE-EESS--HHHHHHHH---HHTSEEEEEE----SSHHH------HHHHHHTT-SEEEETT
T ss_pred HHHHHcCCCEE-ECCCCCHHHHHHHH---HcCCcccCCc----CCHHH------HHHHHHCCCCEEEEec
Confidence 67888899987 43345555554443 2455665443 26653 5566689999999853
No 375
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=84.39 E-value=31 Score=34.46 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=54.7
Q ss_pred CCCCCcEEEEeecCCCHHHHHHHHHhhhhcCCCEE--EEEec-CCCCCCchhHHHHHH-hhCCCcEEEEeccCCCCCCCC
Q 014691 19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLV--EIRLD-GLKNFNPRENIKTLI-KESPVPTLFTYRPIWEGGQYD 94 (420)
Q Consensus 19 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~v--ElRlD-~l~~~~~~~~l~~l~-~~~~~PiI~T~R~~~eGG~~~ 94 (420)
++-+.+.+-.|+.+=|--.+...+. +.|+|+. |.=-+ .+.-... .....+. ...+.|+++.+- |
T Consensus 6 ~~~~~~~~lAPM~g~td~~fR~l~~---~~g~~~~~temvs~~~~~~~~~-~~~~~~~~~~~~~~~~vQl~-----g--- 73 (321)
T PRK10415 6 YQLRNRLIAAPMAGITDRPFRTLCY---EMGAGLTVSEMMSSNPQVWESD-KSRLRMVHIDEPGIRTVQIA-----G--- 73 (321)
T ss_pred ccCCCCEEecCCCCCCcHHHHHHHH---HHCCCEEEEccEEcchhhhcCH-hHHHHhccCccCCCEEEEEe-----C---
Confidence 3445578888999988777776554 4577763 53222 1110011 1111111 123467766664 2
Q ss_pred CCHHHHHHHHHHHHHhCCcEEEEEcccccc
Q 014691 95 GDENERVDVLRLAMELGADYIDVELQVARE 124 (420)
Q Consensus 95 ~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~ 124 (420)
.++++..+..+.+.+.|+|.|||-+.++..
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~ 103 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAK 103 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHH
Confidence 255666676666677889999999988753
No 376
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=84.38 E-value=29 Score=34.08 Aligned_cols=92 Identities=22% Similarity=0.221 Sum_probs=52.0
Q ss_pred CCCCCcEEEEe-ecCCCHHHHHHHHHhhhhcCCCEEEE--------------EecCCC----------CCCchhHHHHHH
Q 014691 19 MRKNPTLICVP-IMGESVDKMVVDMGKANASGADLVEI--------------RLDGLK----------NFNPRENIKTLI 73 (420)
Q Consensus 19 ~~~~~~~icv~-l~~~~~~e~~~~~~~~~~~~~D~vEl--------------RlD~l~----------~~~~~~~l~~l~ 73 (420)
+.=+.|.+..| ..+. -++..+.+. ..|+++++. |+..+. +......++.+.
T Consensus 8 ~~l~npi~~aag~~~~-~~~~~~~~~---~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~ 83 (300)
T TIGR01037 8 IRFKNPLILASGIMGS-GVESLRRID---RSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELK 83 (300)
T ss_pred EECCCCCEeCCcCCCC-CHHHHHHHH---HcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHH
Confidence 44455666555 3343 344444343 458999999 443322 111112233333
Q ss_pred ---hhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh--CCcEEEEEcccc
Q 014691 74 ---KESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL--GADYIDVELQVA 122 (420)
Q Consensus 74 ---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~--~~d~iDiEl~~~ 122 (420)
+..+.|+++.+. |. +.+++.+..+...+. ++|+||+-+.++
T Consensus 84 ~~~~~~~~pl~~qi~-----g~---~~~~~~~~a~~~~~~~~~~d~ielN~~cP 129 (300)
T TIGR01037 84 PVREEFPTPLIASVY-----GS---SVEEFAEVAEKLEKAPPYVDAYELNLSCP 129 (300)
T ss_pred HHhccCCCcEEEEee-----cC---CHHHHHHHHHHHHhccCccCEEEEECCCC
Confidence 223579999986 22 456777777776654 389999987764
No 377
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=84.36 E-value=1.5 Score=44.24 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=30.3
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
.|++|+|.|+|++|.+++..+..+|++++++.++.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~ 218 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN 218 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 478999999999999999999999998777665543
No 378
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=84.35 E-value=16 Score=36.74 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=85.9
Q ss_pred EEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEE---------Eccc------ccchhHHHhhcCCCCcEEEEEc
Q 014691 82 FTYRPIWEGGQ---YDGDENERVDVLRLAMELGADYIDV---------ELQV------AREFNDSIRGKKPEKCKVIVSS 143 (420)
Q Consensus 82 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~d~iDi---------El~~------~~~~~~~l~~~~~~~~kiI~S~ 143 (420)
.|+| +|++ +..+.++..++.+...+.|+++|.+ .++. +.+.++.+... ..++++.+-.
T Consensus 8 ~TLR---DG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~-~~~~~~~~ll 83 (333)
T TIGR03217 8 VTLR---DGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADV-VKRAKVAVLL 83 (333)
T ss_pred CCCC---CCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHh-CCCCEEEEEe
Confidence 4567 5554 4567789999999999999999888 2221 22344444433 2345554222
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEE-ecCCcchhh------hhhccccC
Q 014691 144 HNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGL-VMGERGLIS------RILCAKFG 216 (420)
Q Consensus 144 H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~-~MG~~G~~S------Ri~~~~~G 216 (420)
.|.... .+-++.+.+.|+|++++++..+..+......+..+.....+... .|...-.+. +.+. -+|
T Consensus 84 -----~pg~~~-~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~-~~G 156 (333)
T TIGR03217 84 -----LPGIGT-VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLME-SYG 156 (333)
T ss_pred -----ccCccC-HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHH-hcC
Confidence 121111 23468888899999999998887777766667666665555443 333221111 2222 134
Q ss_pred CcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 217 GFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 217 s~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
.... ++.+ .-|.++..++.++++.
T Consensus 157 a~~i--~i~D----T~G~~~P~~v~~~v~~ 180 (333)
T TIGR03217 157 ADCV--YIVD----SAGAMLPDDVRDRVRA 180 (333)
T ss_pred CCEE--EEcc----CCCCCCHHHHHHHHHH
Confidence 3322 2222 2577777788777664
No 379
>PLN02342 ornithine carbamoyltransferase
Probab=84.21 E-value=49 Score=33.63 Aligned_cols=187 Identities=13% Similarity=0.146 Sum_probs=115.6
Q ss_pred EEecCCcchhhhhhccccCCcccccccCCCccCCC------CCCCHHhHHHHHhc----cc----------cCCCceEEe
Q 014691 198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAP------GQPTIKDLLDLYNF----RQ----------MGPDTKVFG 257 (420)
Q Consensus 198 ~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAP------GQ~~~~~l~~~~~~----~~----------~~~~~~~~~ 257 (420)
+++.....+-+|+.+..+|+.-|..+.+.. ... .|++-+++..+++. .. .......+-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~lsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~~L~gk~va~ 90 (348)
T PLN02342 13 AVSSSSRARRGLVVCAASSSAAAPSPIKGK--SKPKHFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSFQPFKGKSMAM 90 (348)
T ss_pred cccchhHHHHhhhHhhhhcCCCCcccccCC--CCCCCccchhhCCHHHHHHHHHHHHHHHhhhhcCccccccCCCCEEEE
Confidence 455666778889999999987775544432 222 25666777776652 11 011112333
Q ss_pred eeccCccccccHHHHHHHHHHcCCCceeecccc------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHHHHH
Q 014691 258 IIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKS 331 (420)
Q Consensus 258 v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~A~~ 331 (420)
+|=.|= +|+-.=|..+...||-...|..... +++.+..+.+... +.++-+=.|-...+. +.|+.
T Consensus 91 lF~epS--TRTR~SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y-~D~IviR~~~~~~~~-------~la~~ 160 (348)
T PLN02342 91 IFTKPS--MRTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRY-NDIIMARVFAHQDVL-------DLAEY 160 (348)
T ss_pred EecCCC--cchHHHHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEeCCChHHHH-------HHHHh
Confidence 555553 4666678899999999988874332 4688887777544 677777666443322 22222
Q ss_pred hcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccch-HHHHHHHHHHhCCCeEEEE
Q 014691 332 IGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGG-AGKALAYGAKAKGARVVIA 410 (420)
Q Consensus 332 iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGG-aara~~~aL~~~g~~i~v~ 410 (420)
.+ | .|++-. ++ ..+=|-...=+.++.+.. ..++|.+++++|-+. ++++.+.++..+|++|+++
T Consensus 161 ~~-v-PVINA~-~~--~~HPtQaLaDl~Ti~e~~-----------G~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~ 224 (348)
T PLN02342 161 SS-V-PVINGL-TD--YNHPCQIMADALTIIEHI-----------GRLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCA 224 (348)
T ss_pred CC-C-CEEECC-CC--CCChHHHHHHHHHHHHHh-----------CCcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEE
Confidence 11 2 344431 22 235554444455555543 357899999999754 9999999999999998887
Q ss_pred eC
Q 014691 411 NR 412 (420)
Q Consensus 411 nR 412 (420)
.-
T Consensus 225 ~P 226 (348)
T PLN02342 225 CP 226 (348)
T ss_pred CC
Confidence 63
No 380
>PLN02827 Alcohol dehydrogenase-like
Probab=84.15 E-value=1.7 Score=44.15 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=33.0
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|++|+|+|+|+.|.+++..+...|+ .|++++++.+|.+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~ 232 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAE 232 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence 47899999999999999998889999 6888887766643
No 381
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.06 E-value=38 Score=31.93 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC----CchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 014691 32 GESVDKMVVDMGKANASGADLVEIRLDGLKNF----NPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLA 107 (420)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 107 (420)
..++.++.+.+ ...|+|.+-+| |.-... .....++.+.+....|+++. ||-. +. + -.+.+
T Consensus 31 ~~~~~e~a~~~---~~~G~~~l~i~-dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~------GGi~--~~-~---~~~~~ 94 (241)
T PRK13585 31 YGDPVEVAKRW---VDAGAETLHLV-DLDGAFEGERKNAEAIEKIIEAVGVPVQLG------GGIR--SA-E---DAASL 94 (241)
T ss_pred CCCHHHHHHHH---HHcCCCEEEEE-echhhhcCCcccHHHHHHHHHHcCCcEEEc------CCcC--CH-H---HHHHH
Confidence 45676666654 46799999888 543211 22345667767778899873 4432 21 1 22345
Q ss_pred HHhCCcEEEEEccc--ccchhHHHhhcCCCCcEEEEEc--c-------cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691 108 MELGADYIDVELQV--AREFNDSIRGKKPEKCKVIVSS--H-------NYQYTPSVEDLSNLVARIQASGADIVKFATTA 176 (420)
Q Consensus 108 ~~~~~d~iDiEl~~--~~~~~~~l~~~~~~~~kiI~S~--H-------~f~~tP~~~el~~~~~~~~~~gaDivKia~~~ 176 (420)
+..|++.|-+--.. ..+.+.++... -+..+|++|. + .+.... ..+..+..+++.+.|++-+=+.-..
T Consensus 95 ~~~Ga~~v~iGs~~~~~~~~~~~i~~~-~g~~~i~~sid~~~~~v~~~g~~~~~-~~~~~~~~~~~~~~G~~~i~~~~~~ 172 (241)
T PRK13585 95 LDLGVDRVILGTAAVENPEIVRELSEE-FGSERVMVSLDAKDGEVVIKGWTEKT-GYTPVEAAKRFEELGAGSILFTNVD 172 (241)
T ss_pred HHcCCCEEEEChHHhhChHHHHHHHHH-hCCCcEEEEEEeeCCEEEECCCcccC-CCCHHHHHHHHHHcCCCEEEEEeec
Confidence 56799998885433 23344555432 2344566543 2 111111 1145666667778899866443221
Q ss_pred C----CHHHHHHHHHHhccCCCCEEEE
Q 014691 177 L----DITDVARVFQITVHSQVPIIGL 199 (420)
Q Consensus 177 ~----s~~D~~~ll~~~~~~~~p~I~~ 199 (420)
. +..|...+-++....+.|+|+.
T Consensus 173 ~~g~~~g~~~~~i~~i~~~~~iPvia~ 199 (241)
T PRK13585 173 VEGLLEGVNTEPVKELVDSVDIPVIAS 199 (241)
T ss_pred CCCCcCCCCHHHHHHHHHhCCCCEEEe
Confidence 1 1223333344444457887765
No 382
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=84.06 E-value=2 Score=41.61 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhC----CC-------eEEEEeCC
Q 014691 355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK----GA-------RVVIANRT 413 (420)
Q Consensus 355 ~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~----g~-------~i~v~nR~ 413 (420)
.|++++++-. +.++++.+++++|||-+|-+++.-|... |. +|+++||.
T Consensus 10 Agll~Al~~~-----------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 10 AGLLNALRVT-----------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp HHHHHHHHHH-----------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred HHHHHHHHHh-----------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 4667777543 2467888999999999888887776665 86 49999974
No 383
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=84.00 E-value=20 Score=33.58 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=67.1
Q ss_pred CcEEEEeecCCCHHHHHHHHHhhhhcC-CCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHH
Q 014691 23 PTLICVPIMGESVDKMVVDMGKANASG-ADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERV 101 (420)
Q Consensus 23 ~~~icv~l~~~~~~e~~~~~~~~~~~~-~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 101 (420)
.|.+..|+.+-+-.+....+.+ .| ...++-|...... ..+.++.+++..+.|+.+.+.-.. ......
T Consensus 3 ~pi~~a~m~g~~~~~~~~~~~~---~G~ig~i~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~i~~~-------~~~~~~ 70 (236)
T cd04730 3 YPIIQAPMAGVSTPELAAAVSN---AGGLGFIGAGYLTPEA--LRAEIRKIRALTDKPFGVNLLVPS-------SNPDFE 70 (236)
T ss_pred CCEECCCCCCCCCHHHHHHHHh---CCCccccCCCCCCHHH--HHHHHHHHHHhcCCCeEEeEecCC-------CCcCHH
Confidence 4666667776665555554443 33 2554333221100 012233343333457666555211 001233
Q ss_pred HHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691 102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT 174 (420)
Q Consensus 102 ~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~ 174 (420)
+.++.+.+.|+|.|.+-.....++.+.+. +.+.++|.+.|+ . +.++++.+.|+|++.+..
T Consensus 71 ~~~~~~~~~g~d~v~l~~~~~~~~~~~~~---~~~i~~i~~v~~------~----~~~~~~~~~gad~i~~~~ 130 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFGPPAEVVERLK---AAGIKVIPTVTS------V----EEARKAEAAGADALVAQG 130 (236)
T ss_pred HHHHHHHhCCCCEEEEcCCCCHHHHHHHH---HcCCEEEEeCCC------H----HHHHHHHHcCCCEEEEeC
Confidence 56667778899999886554444444443 346788888662 2 223455567999998744
No 384
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=83.99 E-value=1.7 Score=42.11 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=30.2
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCC-----------eEEEEeCC
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGA-----------RVVIANRT 413 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~-----------~i~v~nR~ 413 (420)
.++++.+++++|||.+|-+++.-|.+.++ +|+++||.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence 46778899999999999999988776654 58888864
No 385
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=83.96 E-value=8.2 Score=37.97 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=55.9
Q ss_pred EEEeecCCCHHHHHHHHHhhhhc--CCCEEEEEecCCCC--------CCc---hhHHHHHHhhCCCcEEEEeccCCCCCC
Q 014691 26 ICVPIMGESVDKMVVDMGKANAS--GADLVEIRLDGLKN--------FNP---RENIKTLIKESPVPTLFTYRPIWEGGQ 92 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~--~~D~vElRlD~l~~--------~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~ 92 (420)
+.+.|.+.+.+++..-++.+.+. ++|.||+=+=+=.. .++ .+.++.+++..++|+.+-+|.
T Consensus 93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~------ 166 (300)
T TIGR01037 93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP------ 166 (300)
T ss_pred EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC------
Confidence 66899999999998877776544 39999997654211 011 122344444557888877762
Q ss_pred CCCCHHHHHHHHHHHHHhCCcEEEEE
Q 014691 93 YDGDENERVDVLRLAMELGADYIDVE 118 (420)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~~~d~iDiE 118 (420)
+.++-.++.+.+.+.|+|+|.+-
T Consensus 167 ---~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 167 ---NVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ---ChhhHHHHHHHHHHcCCCEEEEE
Confidence 22344567777778899999874
No 386
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=83.79 E-value=1.6 Score=44.32 Aligned_cols=39 Identities=31% Similarity=0.569 Sum_probs=34.1
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|.+++|+|+|++|.+++..+..+|+ +|+++.++.++.+
T Consensus 190 ~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~ 229 (373)
T cd08299 190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFA 229 (373)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 47799999999999999999999999 8999988876643
No 387
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=83.76 E-value=12 Score=37.88 Aligned_cols=88 Identities=18% Similarity=0.097 Sum_probs=51.2
Q ss_pred ecCCCHHHHHHH----HHhhhhcCCCEEEEEecC--C-----C---CCC-c-------------hhHHHHHHhhCCC-cE
Q 014691 30 IMGESVDKMVVD----MGKANASGADLVEIRLDG--L-----K---NFN-P-------------RENIKTLIKESPV-PT 80 (420)
Q Consensus 30 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~--l-----~---~~~-~-------------~~~l~~l~~~~~~-Pi 80 (420)
++..++++++++ ++++.+.|.|.||+-.-+ | . +.. + .+.++.+++.... |
T Consensus 142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~- 220 (338)
T cd02933 142 LTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR- 220 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc-
Confidence 444445544433 334556799999998765 1 1 110 0 1234444444433 5
Q ss_pred EEEeccCCC----CCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691 81 LFTYRPIWE----GGQYDGDENERVDVLRLAMELGADYIDVEL 119 (420)
Q Consensus 81 I~T~R~~~e----GG~~~~~~~~~~~ll~~~~~~~~d~iDiEl 119 (420)
+++|-..+ |+.+..+.++..++.+.+.+.|+|||+|-.
T Consensus 221 -v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~ 262 (338)
T cd02933 221 -VGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVE 262 (338)
T ss_pred -eEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 45664422 233334667888899998888999999944
No 388
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=83.75 E-value=1.4 Score=45.01 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=29.4
Q ss_pred CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCC
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRT 413 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~ 413 (420)
...|+|||+|-+|.+++|.|++. |. +|+|+.|.
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 44699999999999999999985 86 99999985
No 389
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=83.69 E-value=1.6 Score=45.62 Aligned_cols=35 Identities=40% Similarity=0.390 Sum_probs=32.0
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..||+|+|||+|-+|--++..|..+|++|+++.|.
T Consensus 270 ~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 270 YAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 35899999999999999999999999999999875
No 390
>PRK12831 putative oxidoreductase; Provisional
Probab=83.68 E-value=1.5 Score=46.06 Aligned_cols=35 Identities=34% Similarity=0.376 Sum_probs=31.8
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..+|+|+|||+|-+|--++..|..+|++|+++.|.
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 46899999999999999999999999999999874
No 391
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=83.67 E-value=10 Score=38.09 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=63.0
Q ss_pred EEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCC------------Cc---hhHHHHHHhhCCCcEEEEeccCCC
Q 014691 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNF------------NP---RENIKTLIKESPVPTLFTYRPIWE 89 (420)
Q Consensus 25 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~~~e 89 (420)
-+.+-|.+.+.+++.+-++.+.+.|+|.||+-..+-... ++ .+.++.+++..+.|+-+-+|-..+
T Consensus 66 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~ 145 (333)
T PRK11815 66 PVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGID 145 (333)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeC
Confidence 366899999999999988888788999999987763210 11 122344444457888777775444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 014691 90 GGQYDGDENERVDVLRLAMELGADYIDVE 118 (420)
Q Consensus 90 GG~~~~~~~~~~~ll~~~~~~~~d~iDiE 118 (420)
+. .+.++-.++.+.+.+.|+++|.|-
T Consensus 146 ~~---~t~~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 146 DQ---DSYEFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred CC---cCHHHHHHHHHHHHHhCCCEEEEc
Confidence 32 233456677888888899999875
No 392
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=83.63 E-value=29 Score=34.90 Aligned_cols=242 Identities=19% Similarity=0.229 Sum_probs=123.6
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGAD 113 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d 113 (420)
|.+..+.|++++...|||+|=+-++... ..+.+..+.++.++|++.-+-- + .++...+++.|+|
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~~~e---~A~A~~~Ik~~~~vPLVaDiHf---------~----~rla~~~~~~g~~ 97 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVPDME---AAEALKEIKQRLNVPLVADIHF---------D----YRLALEAAECGVD 97 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCCHH---HHHHHHHHHHhCCCCEEEEeec---------c----HHHHHHhhhcCcc
Confidence 5777888888888899999988877654 2457888888889999966431 1 1233333344444
Q ss_pred EEEEEccc--ccchhHHHh-hcCCCCcEE-EEEccc----------CCCCCCH--HHHHHHHHHHHHcCCCEEEEEeecC
Q 014691 114 YIDVELQV--AREFNDSIR-GKKPEKCKV-IVSSHN----------YQYTPSV--EDLSNLVARIQASGADIVKFATTAL 177 (420)
Q Consensus 114 ~iDiEl~~--~~~~~~~l~-~~~~~~~ki-I~S~H~----------f~~tP~~--~el~~~~~~~~~~gaDivKia~~~~ 177 (420)
-+=|-=.. .++.++.+. .++..++.| |.=.|= ...||.. +......+.+.++|-+=+|+-+.+.
T Consensus 98 k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~S 177 (361)
T COG0821 98 KVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKAS 177 (361)
T ss_pred eEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC
Confidence 43332111 111122222 122223322 221110 0224421 2234445566678888889999999
Q ss_pred CHHHHHHHHHHhcc-CCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccccCCCceEE
Q 014691 178 DITDVARVFQITVH-SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVF 256 (420)
Q Consensus 178 s~~D~~~ll~~~~~-~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~~~~~ 256 (420)
+..+..+..+.+.. .+.|+ .++.-+.|.. +.+.+. |+ --+-.++. .+ -++|-++
T Consensus 178 dv~~~v~aYr~lA~~~dyPL-HLGvTEAG~~------------~~G~Vk----Sa------~alg~LL~-eG-IGDTIRV 232 (361)
T COG0821 178 DVQLMVAAYRLLAKRCDYPL-HLGVTEAGMG------------FKGIVK----SA------AALGALLS-EG-IGDTIRV 232 (361)
T ss_pred CHHHHHHHHHHHHHhcCCCc-ccceecccCc------------ccceeh----HH------HHHHHHHH-hc-CCceEEE
Confidence 99888877776543 35553 2222222210 111111 11 01111121 22 3467777
Q ss_pred eeeccCccccccHHHHHHHHHHcCCCc---eeecccc-----ccHHHHHHHhcCCCCCEEEEcccchHHHHhhh
Q 014691 257 GIIGKPVGHSKSPILYNEAFKSVGFNG---VFVHLLV-----DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCC 322 (420)
Q Consensus 257 ~v~G~pv~hS~SP~ihn~~f~~~gl~~---~y~~~~~-----~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~ 322 (420)
-+-++|+..- ..=...++.+|+.. .|...+. -|+.+.++.+.. +=..+.+|.|..||.++
T Consensus 233 SLt~~P~~EV---~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~---~~~~~~~pl~VAVMGCV 300 (361)
T COG0821 233 SLTADPVEEV---KVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQ---RLEHLKTPLKVAVMGCV 300 (361)
T ss_pred ecCCCchhhh---HHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHH---HhhccCCCceEEEEEeE
Confidence 7777774432 23466788888863 3554442 134333333311 11234567777666543
No 393
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=83.61 E-value=1.7 Score=44.52 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=30.9
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
.+++++|+|+|.+|-.++..|.+.|++|+++.|.
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 3689999999999999999999999999999874
No 394
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=83.61 E-value=1.7 Score=46.51 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=35.6
Q ss_pred ccCCCEEEEEccch-HHHHHHHHHHhCCC-eEEEEeCChhhh
Q 014691 378 ALAGKLFVVIGAGG-AGKALAYGAKAKGA-RVVIANRTYENL 417 (420)
Q Consensus 378 ~~~~k~vlviGaGG-aara~~~aL~~~g~-~i~v~nR~~~ka 417 (420)
-+.||++||-|+|| .|+.++..+.+.+. +|.+++|++-+-
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~ 288 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKL 288 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHH
Confidence 35799999999999 89999999999998 999999997653
No 395
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=83.59 E-value=37 Score=31.61 Aligned_cols=83 Identities=25% Similarity=0.298 Sum_probs=50.1
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEE---EEecCCCCCCchhHHHHHHh--hCCCcEEEEeccCCCCCCCCCCHHHH
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVE---IRLDGLKNFNPRENIKTLIK--ESPVPTLFTYRPIWEGGQYDGDENER 100 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vE---lRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~~eGG~~~~~~~~~ 100 (420)
+..|..+-+---+..-+. ..++|.+- ++.+.+..... ....... ..+.|+++.+.. .+.++.
T Consensus 3 ~~aPm~~~~~~~fR~l~~---~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~qi~g--------~~~~~~ 69 (231)
T cd02801 3 ILAPMVGVTDLPFRLLCR---RYGADLVYTEMISAKALLRGNR--KRLRLLTRNPEERPLIVQLGG--------SDPETL 69 (231)
T ss_pred EeCCCCCCcCHHHHHHHH---HHCCCEEEecCEEEhhhhhcCH--HHHHhhccCccCCCEEEEEcC--------CCHHHH
Confidence 444566655444444333 34688876 66665543221 1222222 347899999872 145677
Q ss_pred HHHHHHHHHhCCcEEEEEccc
Q 014691 101 VDVLRLAMELGADYIDVELQV 121 (420)
Q Consensus 101 ~~ll~~~~~~~~d~iDiEl~~ 121 (420)
.+..+.+.+.|+|.|||-...
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~ 90 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGC 90 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCC
Confidence 777777777899999997655
No 396
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=83.54 E-value=1.7 Score=42.51 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=33.2
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+.+++|.|+|++|.+++..+..+|++|+++.++.++.+
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~ 193 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLA 193 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 467999999999999999999999998888887766543
No 397
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=83.50 E-value=41 Score=31.87 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCcEEEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC-----CCCc-hhHHHHHHhhCCCcEEEEeccCCCCCCCCC
Q 014691 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK-----NFNP-RENIKTLIKESPVPTLFTYRPIWEGGQYDG 95 (420)
Q Consensus 22 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-----~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~ 95 (420)
.+.+|+-+|...|...+.+++++....|+|++= +|-.+ ++.- ...++.+++.++.|+=+++=- .
T Consensus 2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH--~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV--------~ 71 (220)
T COG0036 2 KMMKIAPSILSADFARLGEELKALEAAGADLIH--IDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMV--------E 71 (220)
T ss_pred CCceeeeehhhCCHhHHHHHHHHHHHcCCCEEE--EeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEec--------C
Confidence 456899999999999999999998888999975 45544 2211 246777777667777655431 1
Q ss_pred CHHHHHHHHHHHHHhCCcEEEEEc
Q 014691 96 DENERVDVLRLAMELGADYIDVEL 119 (420)
Q Consensus 96 ~~~~~~~ll~~~~~~~~d~iDiEl 119 (420)
+++.|++ ..++.|++||-+=.
T Consensus 72 ~p~~~i~---~fa~agad~It~H~ 92 (220)
T COG0036 72 NPDRYIE---AFAKAGADIITFHA 92 (220)
T ss_pred CHHHHHH---HHHHhCCCEEEEEe
Confidence 3344444 44555677665533
No 398
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=83.48 E-value=2 Score=43.21 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=33.7
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|.+++|+|+|++|.+++..+..+|+ +|+++.++.+|.+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~ 223 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFE 223 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence 47899999999999999998889999 7999998876643
No 399
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=83.44 E-value=42 Score=33.06 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=53.4
Q ss_pred EEEeecCCCHHHHHHHHHhhhhc---CCCEEEEEecCCC-----CC-CchhHHH----HHHhhCCCcEEEEeccCCCCCC
Q 014691 26 ICVPIMGESVDKMVVDMGKANAS---GADLVEIRLDGLK-----NF-NPRENIK----TLIKESPVPTLFTYRPIWEGGQ 92 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~---~~D~vElRlD~l~-----~~-~~~~~l~----~l~~~~~~PiI~T~R~~~eGG~ 92 (420)
+.++|.+. .++..+.++..... ++|+||+=+=+=. .+ .+.+.+. .+++..++|+++-+|...
T Consensus 94 vivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~---- 168 (294)
T cd04741 94 FFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT---- 168 (294)
T ss_pred EEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----
Confidence 55789998 89988888876554 6999999876422 11 1122333 333445899999998521
Q ss_pred CCCCHHHHHHHHHHHHHh--CCcEEE
Q 014691 93 YDGDENERVDVLRLAMEL--GADYID 116 (420)
Q Consensus 93 ~~~~~~~~~~ll~~~~~~--~~d~iD 116 (420)
+.++..++.+.+.+. |++.|-
T Consensus 169 ---~~~~~~~~a~~l~~~~~G~~gi~ 191 (294)
T cd04741 169 ---DPAQFDTLAEALNAFACPISFIT 191 (294)
T ss_pred ---CHHHHHHHHHHHhccccCCcEEE
Confidence 334455666666666 677665
No 400
>PLN02697 lycopene epsilon cyclase
Probab=83.30 E-value=1.3 Score=47.42 Aligned_cols=32 Identities=38% Similarity=0.387 Sum_probs=29.0
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..|+|||+|.+|.+++++|++.|.+|.++.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 36999999999999999999999999998764
No 401
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=83.26 E-value=41 Score=32.80 Aligned_cols=140 Identities=21% Similarity=0.173 Sum_probs=86.3
Q ss_pred HHHHHHhhhhcCCCEEEEEecCCCCCCchhHHH---HHHh---hCCCcEEE--EeccCCCCCCCCCCHHHHHHHHHHHHH
Q 014691 38 MVVDMGKANASGADLVEIRLDGLKNFNPRENIK---TLIK---ESPVPTLF--TYRPIWEGGQYDGDENERVDVLRLAME 109 (420)
Q Consensus 38 ~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~---~l~~---~~~~PiI~--T~R~~~eGG~~~~~~~~~~~ll~~~~~ 109 (420)
+..+.+++...|+|+|=.-+-.-.+.+ .++++ +++. +..+|++. ..|.+.-.-....+.+.--..-+.+.+
T Consensus 99 ~~~~ve~ai~lgadAV~~~Vy~Gse~e-~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaae 177 (265)
T COG1830 99 LVATVEDAIRLGADAVGATVYVGSETE-REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAE 177 (265)
T ss_pred eeeeHHHHHhCCCcEEEEEEecCCcch-HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHH
Confidence 444556666789999999887666543 33444 3332 35899876 466543211122333322334557888
Q ss_pred hCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC---EEEEEeecCCHHHH
Q 014691 110 LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD---IVKFATTALDITDV 182 (420)
Q Consensus 110 ~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD---ivKia~~~~s~~D~ 182 (420)
+|+|.|-+.+.-+.+-++++... -++.||+|== .++.+.+++.+......+.||- +-+=++...+++-.
T Consensus 178 lGADIiK~~ytg~~e~F~~vv~~--~~vpVviaGG--~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m 249 (265)
T COG1830 178 LGADIIKTKYTGDPESFRRVVAA--CGVPVVIAGG--PKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAM 249 (265)
T ss_pred hcCCeEeecCCCChHHHHHHHHh--CCCCEEEeCC--CCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHH
Confidence 99999999998877777777754 2489999842 3444567788888887776753 33333343444443
No 402
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=83.23 E-value=11 Score=37.51 Aligned_cols=148 Identities=13% Similarity=0.181 Sum_probs=87.5
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCC----------C-CchhH----HHHHHhhC--CCcEEEEeccCC
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKN----------F-NPREN----IKTLIKES--PVPTLFTYRPIW 88 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----------~-~~~~~----l~~l~~~~--~~PiI~T~R~~~ 88 (420)
+.+-|.+.+.+++..-++.+.+.|+|.||+-+-+-.. + ...+. ++.+++.. ++|+-+-+|.
T Consensus 65 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~-- 142 (312)
T PRK10550 65 VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL-- 142 (312)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--
Confidence 5588999999999988888888899999999988421 0 11122 33334444 3777666664
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCC-CHHHHHHHHHHHHHcCC
Q 014691 89 EGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP-SVEDLSNLVARIQASGA 167 (420)
Q Consensus 89 eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP-~~~el~~~~~~~~~~ga 167 (420)
| |. +.++..++.+.+.+.|+++|.|--.. + . -.+++++ +++.+ ..+++. .
T Consensus 143 --g-~~-~~~~~~~~a~~l~~~Gvd~i~Vh~Rt----------------~---~-~~y~g~~~~~~~i-~~ik~~----~ 193 (312)
T PRK10550 143 --G-WD-SGERKFEIADAVQQAGATELVVHGRT----------------K---E-DGYRAEHINWQAI-GEIRQR----L 193 (312)
T ss_pred --C-CC-CchHHHHHHHHHHhcCCCEEEECCCC----------------C---c-cCCCCCcccHHHH-HHHHhh----c
Confidence 2 22 22346788888888999999884221 1 0 0133343 45322 223322 1
Q ss_pred CEEEEEe-ecCCHHHHHHHHHHhccCCCCEEEEecCCcchh
Q 014691 168 DIVKFAT-TALDITDVARVFQITVHSQVPIIGLVMGERGLI 207 (420)
Q Consensus 168 DivKia~-~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~~ 207 (420)
+|.=++. --.|.+|..++++ ......+.++-|-++.+
T Consensus 194 ~iPVi~nGdI~t~~da~~~l~---~~g~DgVmiGRg~l~nP 231 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMA---ITGCDAVMIGRGALNIP 231 (312)
T ss_pred CCcEEEeCCcCCHHHHHHHHh---ccCCCEEEEcHHhHhCc
Confidence 3332332 2257778866654 34556777777765543
No 403
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=83.20 E-value=41 Score=32.54 Aligned_cols=110 Identities=21% Similarity=0.191 Sum_probs=69.6
Q ss_pred HHHHHHhhhhcCCCEEEEEec--CCCCCCchhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEE
Q 014691 38 MVVDMGKANASGADLVEIRLD--GLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYI 115 (420)
Q Consensus 38 ~~~~~~~~~~~~~D~vElRlD--~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~i 115 (420)
...-++.+...||+++=+-.| +|.. ..+.+..+++..++|+|. + + |-.++ + + +..+...|+|+|
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f~g--~~~~l~~v~~~v~iPvl~--k---d---fi~~~--~-q-i~~a~~~GAD~V 137 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFFQG--SLEYLRAARAAVSLPVLR--K---D---FIIDP--Y-Q-IYEARAAGADAI 137 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccCCC--CHHHHHHHHHhcCCCEEe--e---e---ecCCH--H-H-HHHHHHcCCCEE
Confidence 344455666779999955444 3432 245677777778999994 1 1 43333 2 2 556778899999
Q ss_pred EEEccc-ccchhHHHh-hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEE
Q 014691 116 DVELQV-AREFNDSIR-GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVK 171 (420)
Q Consensus 116 DiEl~~-~~~~~~~l~-~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivK 171 (420)
=+.... ..+.++++. ..+.-+..+++-.|+. +|+ +++.+.|+|++=
T Consensus 138 lLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~------~E~----~~A~~~gadiIg 185 (260)
T PRK00278 138 LLIVAALDDEQLKELLDYAHSLGLDVLVEVHDE------EEL----ERALKLGAPLIG 185 (260)
T ss_pred EEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCH------HHH----HHHHHcCCCEEE
Confidence 887765 333444554 2345688889888863 333 446678999754
No 404
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=83.18 E-value=1.9 Score=42.73 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=33.2
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
.+++++|.|+|+.|.+++..+...|++|+++.++.++.
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~ 200 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKA 200 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHH
Confidence 46799999999999999999999999988898887654
No 405
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=83.17 E-value=1.4 Score=48.38 Aligned_cols=31 Identities=35% Similarity=0.468 Sum_probs=28.1
Q ss_pred EEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
-|||||+|++|.+++..+++.|++|.|+...
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 5999999999999999999999999988764
No 406
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=83.12 E-value=37 Score=34.32 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccccc--------------hhHHHhhcCCC---CcE
Q 014691 76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVARE--------------FNDSIRGKKPE---KCK 138 (420)
Q Consensus 76 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~--------------~~~~l~~~~~~---~~k 138 (420)
.++|+|+.+=. ........+.+++.+..+.+-+ ++|++++-+.++.. +++.+...... +..
T Consensus 136 ~~~pvivsI~~-~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~P 213 (344)
T PRK05286 136 RGIPLGINIGK-NKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVP 213 (344)
T ss_pred CCCcEEEEEec-CCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCc
Confidence 47899999832 1112223356788888888755 59999998866421 22222221110 245
Q ss_pred EEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec
Q 014691 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTA 176 (420)
Q Consensus 139 iI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~ 176 (420)
|++-.-. ..+.+++.++.+.+.+.|+|.+-+.-..
T Consensus 214 V~vKlsp---~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 214 LLVKIAP---DLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred eEEEeCC---CCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 5554321 1123467777777777788877766543
No 407
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.11 E-value=1.7 Score=42.71 Aligned_cols=39 Identities=38% Similarity=0.476 Sum_probs=33.2
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka~ 418 (420)
.|.+++|+|+|++|++++..+...|++ |+++.++.++.+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 198 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE 198 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 467999999999999999988999995 899988877653
No 408
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=83.03 E-value=1.5 Score=46.73 Aligned_cols=32 Identities=38% Similarity=0.379 Sum_probs=28.8
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR 412 (420)
...++|||+|.+|.++|..|+..|.++.|+.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 46799999999999999999999998888764
No 409
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=82.94 E-value=1.9 Score=42.10 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=33.1
Q ss_pred CCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 381 ~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
+++++|+|+ |+.|.+++..+...|++|+++.++.++.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~ 185 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAAD 185 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHH
Confidence 579999998 99999999999999999988888877644
No 410
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=82.93 E-value=64 Score=33.61 Aligned_cols=202 Identities=15% Similarity=0.115 Sum_probs=119.7
Q ss_pred HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc-c------cchhH----HHhh-cCCC
Q 014691 68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV-A------REFND----SIRG-KKPE 135 (420)
Q Consensus 68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~-~------~~~~~----~l~~-~~~~ 135 (420)
-+++++...+.|++-|+=.++-| .+.++..++......-|+|+|-=|-.. + ++.++ .+.. .++.
T Consensus 134 G~R~~lgv~~RPL~gtiiKP~~G----lsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eT 209 (412)
T TIGR03326 134 GVREFLGIKDRPLLGTVPKPKVG----LSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAET 209 (412)
T ss_pred hHHHHhCCCCCceEEeecccccc----CChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 34555555689999997665443 367788888888888888987544222 1 11111 1111 1234
Q ss_pred CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCC---------------CEEEEe
Q 014691 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---------------PIIGLV 200 (420)
Q Consensus 136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~---------------p~I~~~ 200 (420)
+.+.+-+.+- |-+.+|+.+..+.+.+.|++.+-+.+..-..+=+..|-+.....+. |--.|+
T Consensus 210 G~~~~ya~Ni---T~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gis 286 (412)
T TIGR03326 210 GERKEYLANI---TAPVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGIS 286 (412)
T ss_pred CCcceEEEEe---cCCHHHHHHHHHHHHHhCCCeEEEEeeccchHHHHHHHHhhccCCeEEEEcCCcccccccCCCCcCc
Confidence 5556655443 4446899999999999999999999998887776665543222223 333455
Q ss_pred cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcccc--CCCceEEeeeccCccccccHHHHHHHHHH
Q 014691 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQM--GPDTKVFGIIGKPVGHSKSPILYNEAFKS 278 (420)
Q Consensus 201 MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~--~~~~~~~~v~G~pv~hS~SP~ihn~~f~~ 278 (420)
|-.+|++.|+++- ..+.|.+.+.+ .-+ .+-++..++.+.... ..-.+.+-+.+. ..+|..-...++.
T Consensus 287 ~~vl~kl~RLaGa---D~~~~~t~~~G--k~~--~~~~~~~~~~~~~~~~~~~~k~~~Pv~sG----G~~~~~vp~~~~~ 355 (412)
T TIGR03326 287 MFALAKLYRLIGV---DQLHTGTAGVG--KLE--GGKEDTKQINDFLRQKWHHIKPVFPVSSG----GLHPGLVPPLIDA 355 (412)
T ss_pred HHHHHHHHHHcCC---CeeeeCCCccC--CCC--CCHHHHHHHHHHHhCcccCCCCceEecCC----CCChhHHHHHHHh
Confidence 5556788888762 34455544111 112 234444545443211 111335555554 3567777788889
Q ss_pred cCCCceeec
Q 014691 279 VGFNGVFVH 287 (420)
Q Consensus 279 ~gl~~~y~~ 287 (420)
+|-|..|..
T Consensus 356 ~G~Dvil~~ 364 (412)
T TIGR03326 356 LGKDLVIQA 364 (412)
T ss_pred cCCceEEec
Confidence 998877664
No 411
>PLN02661 Putative thiazole synthesis
Probab=82.86 E-value=1.6 Score=44.38 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=29.8
Q ss_pred CCEEEEEccchHHHHHHHHHHhC-CCeEEEEeCCh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAK-GARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~-g~~i~v~nR~~ 414 (420)
...|+|+|+|.+|-.+++.|++. |++|.|+.|+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 34799999999999999999976 77999999864
No 412
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=82.86 E-value=57 Score=33.87 Aligned_cols=201 Identities=13% Similarity=0.156 Sum_probs=117.2
Q ss_pred HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEE-ccccc------chh----HHHhh-cCCC
Q 014691 68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVE-LQVAR------EFN----DSIRG-KKPE 135 (420)
Q Consensus 68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE-l~~~~------~~~----~~l~~-~~~~ 135 (420)
-++.++...+.|+|-|+=.++-| .+.++..++......-|+|+|-=| .-.++ +-+ +.+.. .+..
T Consensus 133 G~R~llgv~~RPLigtiiKP~~G----lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eT 208 (406)
T cd08207 133 GTRRLTGVEDRPLIGTIIKPSVG----LTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRT 208 (406)
T ss_pred hHHHHhCCCCCceEEEecccccC----CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 35555555689999997765443 367788888888887788876433 32221 111 11111 2334
Q ss_pred CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhcc------------CCCCEEEEecCC
Q 014691 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH------------SQVPIIGLVMGE 203 (420)
Q Consensus 136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~------------~~~p~I~~~MG~ 203 (420)
+.+.+-+.+. |-+.+|+.+..+.+.+.|++++-+.+..-...=+..|-+.... ...|--.|+|-.
T Consensus 209 G~~~~y~~Ni---T~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p~~Gis~~v 285 (406)
T cd08207 209 GRKVMYAFNI---TDDIDEMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRRHSQLPIHGHRNGWGMLTRSPALGISFQA 285 (406)
T ss_pred CCcceEEEec---CCCHHHHHHHHHHHHHhCCCeEEEeccccchHHHHHHHhcCCceEEECCCcceecccCCCCCCcHHH
Confidence 5566655443 4457899999999999999999999998777766555542110 022444555556
Q ss_pred cchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccc--cCC-CceEEeeeccCccccccHHHHHHHHHHcC
Q 014691 204 RGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ--MGP-DTKVFGIIGKPVGHSKSPILYNEAFKSVG 280 (420)
Q Consensus 204 ~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~--~~~-~~~~~~v~G~pv~hS~SP~ihn~~f~~~g 280 (420)
+|++.|+++- ..+.|.+.... -.- +-++..++.+... ... ....+-+.+.. .+|..-...++.+|
T Consensus 286 l~kl~RLaGa---D~~~~~~~~Gk--f~~---~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG----~~~~~vp~~~~~~G 353 (406)
T cd08207 286 YQKLWRLAGV---DHLHVNGLASK--FWE---SDDSVIESARACLTPLGGPDDAAMPVFSSG----QWGGQAPPTYRRLG 353 (406)
T ss_pred HHHHHHHcCC---CccccCCCcCC--cCC---CcHHHHHHHHHHhCchhccCCCeeEeccCC----CCHhHHHHHHHHhC
Confidence 7888888763 33444444321 111 2233333333211 111 23456666554 46666777788898
Q ss_pred -CCceeec
Q 014691 281 -FNGVFVH 287 (420)
Q Consensus 281 -l~~~y~~ 287 (420)
.|..|..
T Consensus 354 ~~Dvi~~a 361 (406)
T cd08207 354 SVDLLYLA 361 (406)
T ss_pred CCceEEec
Confidence 5877763
No 413
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=82.81 E-value=1.5 Score=46.07 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=33.3
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..++||+|+|||+|-.|.-++..|...+.+|+++.|..
T Consensus 200 ~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 200 DPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred cccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 34689999999999999999999998877999998853
No 414
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=82.68 E-value=28 Score=36.61 Aligned_cols=158 Identities=22% Similarity=0.328 Sum_probs=88.3
Q ss_pred CCcEEEEeecCC-CHHHHHHHHHhh-----hhcC----CCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCCCCC
Q 014691 22 NPTLICVPIMGE-SVDKMVVDMGKA-----NASG----ADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGG 91 (420)
Q Consensus 22 ~~~~icv~l~~~-~~~e~~~~~~~~-----~~~~----~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG 91 (420)
|.|.|++-|... +.+++...++.. ...| +|+|-+|...-+...-...++.+.+..+.|+.+--
T Consensus 90 np~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT------- 162 (450)
T PRK04165 90 NPTGIAVDVSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLILCS------- 162 (450)
T ss_pred CCCEEEEEEeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeC-------
Confidence 456788777332 236666666655 3445 99999998764210012334455444688976542
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEEEcccccchhHHHhh-cCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691 92 QYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRG-KKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIV 170 (420)
Q Consensus 92 ~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDiv 170 (420)
.+ -+.++++++.+++.+-+=.....+-.+.+.. .+..+..+|++.- +.+.+.+..+++.+.|- -
T Consensus 163 ---~d----pevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~------dl~~L~~lv~~~~~~GI--~ 227 (450)
T PRK04165 163 ---ED----PAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAP------NLEELKELVEKLQAAGI--K 227 (450)
T ss_pred ---CC----HHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEch------hHHHHHHHHHHHHHcCC--C
Confidence 12 2477788887765221112222222233321 2234677887532 26778888999998885 5
Q ss_pred EEEeec------CCHHHHHHHHHH-----hccCCCCEEEEec
Q 014691 171 KFATTA------LDITDVARVFQI-----TVHSQVPIIGLVM 201 (420)
Q Consensus 171 Kia~~~------~s~~D~~~ll~~-----~~~~~~p~I~~~M 201 (420)
++..-| ++.++..++-++ .+....|+|+...
T Consensus 228 dIILDPg~ggf~ksl~~~~~iRr~Al~~~~~~lgyPil~~~s 269 (450)
T PRK04165 228 DLVLDPGTENIKETLDDFVQIRRAAIKKGDRPLGYPIIAFPI 269 (450)
T ss_pred cEEECCCCchhhhhHHHHHHHHhhhhhcccccCCCCEEEcch
Confidence 777666 344555444333 1223789888554
No 415
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=82.66 E-value=1.7 Score=44.42 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 381 GKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+++.||| .|.+|++++.+|...|.+|++++|+.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 47899999 89999999999999999999999863
No 416
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=82.57 E-value=2 Score=41.83 Aligned_cols=39 Identities=44% Similarity=0.572 Sum_probs=33.3
Q ss_pred CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+.+++|.|+ |+.|++++..+...|++|+.+.|+.++.+
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~ 201 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLK 201 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 4678999997 88999999999999998888888876644
No 417
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=82.55 E-value=2.1 Score=41.94 Aligned_cols=39 Identities=33% Similarity=0.459 Sum_probs=32.6
Q ss_pred CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.|.+++|.| +|++|.+++..+...|++|+.+.++.++.+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~ 182 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVA 182 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 478999999 599999998888889999888888776643
No 418
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=82.54 E-value=2.3 Score=42.38 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=34.3
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|++++|.|+|+.|.+++..+..+|+ +|+++.++.++.+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~ 211 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRE 211 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 47899999999999999999999999 8999988877654
No 419
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=82.48 E-value=2.5 Score=43.51 Aligned_cols=53 Identities=28% Similarity=0.391 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 354 YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 354 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
++|...+.++.+.. .+.+++|++|.|-|.|-+|+-++.-|.+.|++|+.++-+
T Consensus 187 g~Gv~~~~~~a~~~-------~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds 239 (411)
T COG0334 187 GYGVFYAIREALKA-------LGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDS 239 (411)
T ss_pred ceehHHHHHHHHHH-------cCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcC
Confidence 55666665544332 124589999999999999999999999999987776644
No 420
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=82.42 E-value=1.2 Score=44.29 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeC
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANR 412 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR 412 (420)
.+.++|||||||-|-.+...|+..|+ ++.|++-
T Consensus 39 ~~~kiLviGAGGLGCElLKnLal~gF~~~~viDm 72 (422)
T KOG2015|consen 39 QDCKILVIGAGGLGCELLKNLALSGFRQLHVIDM 72 (422)
T ss_pred hhCcEEEEccCcccHHHHHhHHhhccceeEEEee
Confidence 35789999999999999999999998 8888774
No 421
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=82.41 E-value=2.1 Score=43.79 Aligned_cols=228 Identities=19% Similarity=0.239 Sum_probs=105.3
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEec-----cCCCCCCCCCCHHHH
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR-----PIWEGGQYDGDENER 100 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R-----~~~eGG~~~~~~~~~ 100 (420)
|-++-...++++-++.++.+.+.|+|.| .|+=..-+..+.-+.+++.+++|+= |+- ....|.....++++-
T Consensus 66 IGtS~~~~d~~~E~~K~~~A~~~GADtv---MDLStggdl~~iR~~il~~~~vpvG-TVPiYqa~~~~~~~~~~~t~d~~ 141 (420)
T PF01964_consen 66 IGTSSDYSDIEEELEKLKIAEKAGADTV---MDLSTGGDLDEIRRAILENSPVPVG-TVPIYQAAIRKGGSIVDMTEDDF 141 (420)
T ss_dssp E--------HHHHHHHHHHHHHTT-SEE---EE---STTHHHHHHHHHHT-SS-EE-E-HHHHHHHHTTT-GGG--HHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhCCCEE---EEcCCCCCHHHHHHHHHHhCCCccc-cchHHHHHHHhCCChhhCCHHHH
Confidence 3344455567777888888889999987 5654332222222345566777763 321 224445567788999
Q ss_pred HHHHHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEc----------ccCCCCCCHHHHHHHHHHHHHcCCCEE
Q 014691 101 VDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS----------HNYQYTPSVEDLSNLVARIQASGADIV 170 (420)
Q Consensus 101 ~~ll~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tP~~~el~~~~~~~~~~gaDiv 170 (420)
++.++.-++.|+||+.|=-....+.++.+.. .++.-=|+|. |+-++.|=.+...++++-++++.. ..
T Consensus 142 ~~~ie~qa~~GVDfmtiH~git~~~~~~~~~--~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDV-tL 218 (420)
T PF01964_consen 142 FDVIEKQAKDGVDFMTIHCGITRETLERLKK--SGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDV-TL 218 (420)
T ss_dssp HHHHHHHHHHT--EEEE-TT--GGGGGGGT----TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT--EE
T ss_pred HHHHHHHHHcCCCEEEEccchhHHHHHHHhh--hccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCe-eE
Confidence 9999999999999999988777777666642 2333346675 667788855566666666665541 11
Q ss_pred EEE--eecCCHHHH---HHHHHHhccCCCCEEEEecCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHh
Q 014691 171 KFA--TTALDITDV---ARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245 (420)
Q Consensus 171 Kia--~~~~s~~D~---~~ll~~~~~~~~p~I~~~MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~ 245 (420)
-+. ..|-+..|. ..+.++. -.|++-+-.|=.+- . .+-++ ||.+++.++..-.+
T Consensus 219 SLGDglRPG~i~Da~D~aQi~EL~----------~lgeL~~rA~e~gV---Q-----vMVEG----PGHVPl~~I~~nv~ 276 (420)
T PF01964_consen 219 SLGDGLRPGCIADATDRAQIQELI----------ILGELVKRAREAGV---Q-----VMVEG----PGHVPLNQIEANVK 276 (420)
T ss_dssp EE--TT--SSGGGTT-HHHHHHHH----------HHHHHHHHHHHTT----------EEEEE-----SB--GGGHHHHHH
T ss_pred ecccccCCCCcCCCCcHHHHHHHH----------HHHHHHHHHHHCCC---e-----EEeeC----CCCCCHHHHHHHHH
Confidence 221 233333333 2223221 12333333333221 1 12233 99999998887666
Q ss_pred cc-ccCCCceEEeeeccCccc------cccHHHHHHHHHHcCCCc
Q 014691 246 FR-QMGPDTKVFGIIGKPVGH------SKSPILYNEAFKSVGFNG 283 (420)
Q Consensus 246 ~~-~~~~~~~~~~v~G~pv~h------S~SP~ihn~~f~~~gl~~ 283 (420)
+. ++. +-.-|+++|-=++- -.|-.|=-+.....|-|.
T Consensus 277 lqK~lc-~~APfYvLGPLvTDiapGYDHIt~AIGgAiaa~~GAdf 320 (420)
T PF01964_consen 277 LQKRLC-HGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADF 320 (420)
T ss_dssp HHHHHT-TT--EEEE--BS-SS-TT-HHHHHHHHHHHHHHHT-SE
T ss_pred HHHHhc-CCCCcccCCccccccCCChhHHHHHHHHHHHHHcCcce
Confidence 43 232 23468888843322 134466666777778775
No 422
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=82.32 E-value=2.1 Score=42.44 Aligned_cols=39 Identities=33% Similarity=0.492 Sum_probs=33.7
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
++++++|.|+|++|.+++..+...|++|+++.++.++.+
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~ 203 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLE 203 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 478999999999999999999999999888888776643
No 423
>PTZ00058 glutathione reductase; Provisional
Probab=82.28 E-value=1.7 Score=47.02 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=29.1
Q ss_pred EEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 383 LFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
.++|||+|.+|.+++..++++|.+|.++.+.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 5999999999999999999999999999875
No 424
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.18 E-value=10 Score=37.63 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=52.3
Q ss_pred ecCCCHHHHHHHH----HhhhhcCCCEEEEEec--CC-----CC---C-Cc-------------hhHHHHHHhhC--CCc
Q 014691 30 IMGESVDKMVVDM----GKANASGADLVEIRLD--GL-----KN---F-NP-------------RENIKTLIKES--PVP 79 (420)
Q Consensus 30 l~~~~~~e~~~~~----~~~~~~~~D~vElRlD--~l-----~~---~-~~-------------~~~l~~l~~~~--~~P 79 (420)
++..++++++++. +++.+.|.|.||+-.- || .. . .+ .+.++.+++.. +.|
T Consensus 131 mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~ 210 (327)
T cd02803 131 MTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFP 210 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCce
Confidence 4445555554443 3445679999999874 22 11 0 00 12344555544 556
Q ss_pred EEEEeccC--CCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691 80 TLFTYRPI--WEGGQYDGDENERVDVLRLAMELGADYIDVEL 119 (420)
Q Consensus 80 iI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl 119 (420)
+.+-++.. .++| .+.++..++++.+.+.|+|||+|--
T Consensus 211 i~vris~~~~~~~g---~~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 211 VGVRLSADDFVPGG---LTLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred EEEEechhccCCCC---CCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 66665532 2233 3567888899999999999998754
No 425
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.10 E-value=1.6 Score=47.87 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=27.8
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR 412 (420)
..|||||+|++|.+++..+++.|++|.|+..
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence 3699999999999999999999999888864
No 426
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=82.10 E-value=3.7 Score=42.32 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=41.6
Q ss_pred ecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-----------------chHHHHHHHHHHhCCCeEEEEeCC
Q 014691 351 NTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-----------------GGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 351 NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-----------------GGaara~~~aL~~~g~~i~v~nR~ 413 (420)
--+..-++..+.+.+.. +.+++||+++|-|. |.+|.+++.++...|++|+++.+.
T Consensus 163 ~~~~~~i~~~v~~~~~~--------~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 163 LAEPETIVKAAEREFSP--------KEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred CCCHHHHHHHHHHHHhh--------ccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 34455566666555531 13588999999887 569999999999999999888765
Q ss_pred h
Q 014691 414 Y 414 (420)
Q Consensus 414 ~ 414 (420)
.
T Consensus 235 ~ 235 (390)
T TIGR00521 235 V 235 (390)
T ss_pred C
Confidence 3
No 427
>PRK13748 putative mercuric reductase; Provisional
Probab=82.01 E-value=1.8 Score=46.49 Aligned_cols=32 Identities=44% Similarity=0.566 Sum_probs=30.0
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
..++|||+|.+|.+++..|+++|.+|.|++|.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 47999999999999999999999999999985
No 428
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=81.99 E-value=2 Score=42.34 Aligned_cols=39 Identities=36% Similarity=0.493 Sum_probs=33.3
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKG-ARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g-~~i~v~nR~~~ka~ 418 (420)
.+++++|.|+|++|.+++..+...| ++|+.+.++.++.+
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~ 206 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALK 206 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHH
Confidence 4789999999999999999888999 58888888876643
No 429
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=81.97 E-value=2.1 Score=43.51 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=32.7
Q ss_pred cccCCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 377 SALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 377 ~~~~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
..-+++++||.|+ |-.|++++..|.+.|.+|+.++|..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 3446799999997 7799999999999999999998753
No 430
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=81.96 E-value=1.6 Score=50.37 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=32.0
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
+...+|||+|+||.|-.++..|+..|+ +|+|++-+
T Consensus 22 L~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d 57 (1008)
T TIGR01408 22 MAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTE 57 (1008)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456789999999999999999999999 99999865
No 431
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=81.78 E-value=2.2 Score=42.90 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=31.6
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
.|.+++|+|+|++|.+++..+...|++++++.++.++
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~ 216 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKK 216 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 4789999999999999999889999987777776654
No 432
>PLN02487 zeta-carotene desaturase
Probab=81.77 E-value=2 Score=46.58 Aligned_cols=34 Identities=29% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
+++|+|||+|-+|-++++.|.+.|.+|+|+.+..
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 3599999999999999999999999999998754
No 433
>PLN02712 arogenate dehydrogenase
Probab=81.72 E-value=2.9 Score=46.12 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYE 415 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ 415 (420)
+.+++.|||.|.+|++++.+|...|.+|++++|+..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~ 86 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDH 86 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 446899999999999999999999999999999854
No 434
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=81.68 E-value=52 Score=33.31 Aligned_cols=168 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred eecCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHHHHhhCCCcEEEEeccCC--CCCCCCCCHHHHHHHHHH
Q 014691 29 PIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIW--EGGQYDGDENERVDVLRL 106 (420)
Q Consensus 29 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~--eGG~~~~~~~~~~~ll~~ 106 (420)
+.+...+++++..+.+.+..++|.|=+---| -..+.+.+..+.++|+++-... .--..+.++..-.--.+.
T Consensus 42 ~~~~~~l~~~K~lv~~~l~~~asaILld~~y-------G~~a~~~~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~ 114 (340)
T PRK12858 42 EASYTDLVDFKLAVSEALTPYASAILLDPEY-------GLPAAKVRDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRR 114 (340)
T ss_pred CcchhhHHHHHHHHHHHHhhCCCEEEEcccc-------ChhhhcccCCCCCeEEEecccccccCCCCCCccccccccHHH
Q ss_pred HHHhCCcEEEEEcccccc-----------hhHHHh-hcCCCCcEEEE---EcccCCCCCCH--------HHHHHHHHHHH
Q 014691 107 AMELGADYIDVELQVARE-----------FNDSIR-GKKPEKCKVIV---SSHNYQYTPSV--------EDLSNLVARIQ 163 (420)
Q Consensus 107 ~~~~~~d~iDiEl~~~~~-----------~~~~l~-~~~~~~~kiI~---S~H~f~~tP~~--------~el~~~~~~~~ 163 (420)
+.++|+|.|-+=+....+ .+.++. ..++.+..+++ +|=.-....+. +-+....+...
T Consensus 115 a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~ 194 (340)
T PRK12858 115 IKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFS 194 (340)
T ss_pred HHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHh
Q ss_pred H--cCCCEEEEEeecC--------------CHHHHHHHHHHhccC-CCCEEEEecCC
Q 014691 164 A--SGADIVKFATTAL--------------DITDVARVFQITVHS-QVPIIGLVMGE 203 (420)
Q Consensus 164 ~--~gaDivKia~~~~--------------s~~D~~~ll~~~~~~-~~p~I~~~MG~ 203 (420)
+ +|+||+|+-+..+ +.++....++-.... +.|+|..+=|.
T Consensus 195 ~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~ 251 (340)
T PRK12858 195 KPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV 251 (340)
T ss_pred hhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC
No 435
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=81.60 E-value=73 Score=33.73 Aligned_cols=201 Identities=15% Similarity=0.121 Sum_probs=116.6
Q ss_pred HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc-cc------chhH----HHhh-cCCC
Q 014691 68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV-AR------EFND----SIRG-KKPE 135 (420)
Q Consensus 68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~-~~------~~~~----~l~~-~~~~ 135 (420)
-++.++...+.|++-|+=.+..| .+.++..++....+.-|+|+|-=+-.. ++ +.+. .+.. ....
T Consensus 150 GiR~~lgv~~RPL~gtiiKP~~G----Lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eT 225 (468)
T PRK04208 150 VERERLDKYGRPLLGTTPKPKLG----LSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAET 225 (468)
T ss_pred hHHHHhCCCCCceEEEeeccccC----CCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 45555555689999997665442 367788888888887788887544222 11 1111 1111 2234
Q ss_pred CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCC---------------CEEEEe
Q 014691 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV---------------PIIGLV 200 (420)
Q Consensus 136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~---------------p~I~~~ 200 (420)
+.+.+-+.+-. .++.+|+.+..+.+.+.|++++-+.+......=+..|-+.....+. |--.|+
T Consensus 226 G~~k~y~~NiT--~~~~~em~~ra~~~~e~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~IhaHrA~~ga~~r~~~~Gis 303 (468)
T PRK04208 226 GERKGHYLNVT--APTMEEMYKRAEFAKELGSPIVMIDVVTAGWTALQSLREWCRDNGLALHAHRAMHAAFTRNPNHGIS 303 (468)
T ss_pred CCcceEEEecC--CCCHHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHHhhhcCCcEEEecCCcccccccCcCCCCC
Confidence 44555554433 2236899999999999999999999998887776665553222222 334555
Q ss_pred cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhccc-----------------cCCCceEEeeeccCc
Q 014691 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ-----------------MGPDTKVFGIIGKPV 263 (420)
Q Consensus 201 MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~-----------------~~~~~~~~~v~G~pv 263 (420)
|-.+|++.|+++- ..+.|.+.... -++ +-++..++.+... ...-.+.+-+.+..
T Consensus 304 ~~vl~Kl~RLaGa---D~ih~~t~~Gk---~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~k~~~Pv~SGG- 374 (468)
T PRK04208 304 FRVLAKLLRLIGV---DHLHTGTVVGK---LEG--DRAEVLGYYDILREDFVPEDRSRGIFFDQDWGSIKPVFPVASGG- 374 (468)
T ss_pred HHHHHHHHHHcCC---CccccCCccCC---ccC--CHHHHHHHHHHHhhhhccccccccccccccccCCCCceEecCCC-
Confidence 5567888888763 33444444321 122 2333333333110 01112344455543
Q ss_pred cccccHHHHHHHHHHcCCCceee
Q 014691 264 GHSKSPILYNEAFKSVGFNGVFV 286 (420)
Q Consensus 264 ~hS~SP~ihn~~f~~~gl~~~y~ 286 (420)
.+|..-...++.+|-|..|.
T Consensus 375 ---~~~g~vp~~~~~~G~Dvil~ 394 (468)
T PRK04208 375 ---IHPGHMPALLDIFGDDVVLQ 394 (468)
T ss_pred ---CChhHHHHHHHHhCCceEEe
Confidence 45666677788899776655
No 436
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=81.59 E-value=2.1 Score=49.24 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=33.8
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.-.||+|.|||+|.+|.|++-.|...|..|+|+.|..
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 3469999999999999999999999999999999963
No 437
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.52 E-value=1.8 Score=46.07 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=28.7
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEe
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIAN 411 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~n 411 (420)
....++|||+|.+|-+++..|+..|.+++|+.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 34689999999999999999999999888875
No 438
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=81.51 E-value=1.7 Score=50.20 Aligned_cols=34 Identities=38% Similarity=0.479 Sum_probs=30.8
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+.|+|||+|.+|.+++..++..|.+|+|++++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~ 196 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQP 196 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3579999999999999999999999999998763
No 439
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=81.41 E-value=1.9 Score=47.30 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=29.9
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
-.|+|||+|-+|.++++.|+..|.+|.|+.|.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 35999999999999999999999999999986
No 440
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=81.40 E-value=2 Score=43.26 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=34.2
Q ss_pred CCEEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhhhhc
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAK-GA-RVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~-g~-~i~v~nR~~~ka~~ 419 (420)
-+.+.|||+|..|+.-+.++... ++ +|.|++|+++++++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~ 170 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEA 170 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHH
Confidence 36899999999999999998755 67 99999999998875
No 441
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=81.31 E-value=60 Score=32.18 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=76.2
Q ss_pred HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc---------------cchhHHHh---
Q 014691 69 IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA---------------REFNDSIR--- 130 (420)
Q Consensus 69 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---------------~~~~~~l~--- 130 (420)
++++.+..++|+++-..+ |.- +...-.+..+...+.|+..|-||-... +++...|.
T Consensus 70 ~~~I~~~~~iPviaD~d~----GyG--~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~ 143 (292)
T PRK11320 70 VRRITDACDLPLLVDIDT----GFG--GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAV 143 (292)
T ss_pred HHHHHhccCCCEEEECCC----CCC--CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHH
Confidence 444445568999998764 542 555566778888999999999998531 22334444
Q ss_pred hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEE
Q 014691 131 GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPII 197 (420)
Q Consensus 131 ~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I 197 (420)
.++.+.-=+|+-.-|--.....+|..++.+.-.+.|||++=+-. +++.+++.++.+.+ +.|+.
T Consensus 144 ~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~-~~~~~~i~~~~~~~---~~Pl~ 206 (292)
T PRK11320 144 DARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEA-MTELEMYRRFADAV---KVPIL 206 (292)
T ss_pred HhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHHHHHHhc---CCCEE
Confidence 22222224455555532344577888888888889999987754 57778876665543 45653
No 442
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=81.06 E-value=16 Score=35.91 Aligned_cols=89 Identities=22% Similarity=0.247 Sum_probs=49.6
Q ss_pred hhHHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccccc---chhHHHhhcCCCCcEEEEE
Q 014691 66 RENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAR---EFNDSIRGKKPEKCKVIVS 142 (420)
Q Consensus 66 ~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~---~~~~~l~~~~~~~~kiI~S 142 (420)
.+.++.+++..++|+|--+|.- |+.-.+.....|+|||| |-.... +++..+.. +.+..++.
T Consensus 56 p~~I~~I~~~V~iPVig~~kig------------h~~Ea~~L~~~GvDiID-eTe~lrPade~~~~~K~--~f~vpfma- 119 (287)
T TIGR00343 56 PKMIKEIMDAVSIPVMAKVRIG------------HFVEAQILEALGVDYID-ESEVLTPADWTFHIDKK--KFKVPFVC- 119 (287)
T ss_pred HHHHHHHHHhCCCCEEEEeecc------------HHHHHHHHHHcCCCEEE-ccCCCCcHHHHHHHHHH--HcCCCEEc-
Confidence 3568888888899999988841 23333445567999999 543322 22222211 11222222
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCH
Q 014691 143 SHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDI 179 (420)
Q Consensus 143 ~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~ 179 (420)
+-.++.+-+.+. +.|||++.-...+-|.
T Consensus 120 --------d~~~l~EAlrai-~~GadmI~Tt~e~gTg 147 (287)
T TIGR00343 120 --------GARDLGEALRRI-NEGAAMIRTKGEAGTG 147 (287)
T ss_pred --------cCCCHHHHHHHH-HCCCCEEeccccCCCc
Confidence 122344444443 6799999766555554
No 443
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=81.02 E-value=57 Score=31.82 Aligned_cols=141 Identities=15% Similarity=0.104 Sum_probs=82.0
Q ss_pred HHHHHHhCCcEEEEEcccccc---------------hh-HHHhhcCCCCcEEEEE------cccCCCCCCHHHHHHHHHH
Q 014691 104 LRLAMELGADYIDVELQVARE---------------FN-DSIRGKKPEKCKVIVS------SHNYQYTPSVEDLSNLVAR 161 (420)
Q Consensus 104 l~~~~~~~~d~iDiEl~~~~~---------------~~-~~l~~~~~~~~kiI~S------~H~f~~tP~~~el~~~~~~ 161 (420)
++++++.|++.|.+-...++. .. +.+..++..+..+.++ ..+...+ +.+.+.+..++
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~~ 157 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAER 157 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHHH
Confidence 567888999999987655431 11 1122234456666432 2221122 56789999999
Q ss_pred HHHcCCCEEEEEeec--CCHHHHHHHHHHhccC--CCCEEEEecCCcc--hhhhhhccccCCcccccccCCC--ccC---
Q 014691 162 IQASGADIVKFATTA--LDITDVARVFQITVHS--QVPIIGLVMGERG--LISRILCAKFGGFLTFGTLENG--IVS--- 230 (420)
Q Consensus 162 ~~~~gaDivKia~~~--~s~~D~~~ll~~~~~~--~~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~--~~s--- 230 (420)
+.+.|+|.+.++=+. -++.++.++.+.+... +.|+-..+=-..| ...=+..-.-|..+.=+++..- .+-
T Consensus 158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~e 237 (274)
T cd07938 158 LLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPG 237 (274)
T ss_pred HHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCC
Confidence 999999999999655 5688998888876543 3566554433333 2223333333433322333311 111
Q ss_pred CCCCCCHHhHHHHHh
Q 014691 231 APGQPTIKDLLDLYN 245 (420)
Q Consensus 231 APGQ~~~~~l~~~~~ 245 (420)
.-|+++.+++...++
T Consensus 238 raGN~~~E~lv~~L~ 252 (274)
T cd07938 238 ATGNVATEDLVYMLE 252 (274)
T ss_pred ccCCcCHHHHHHHHH
Confidence 357888888776654
No 444
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=80.85 E-value=2.6 Score=40.50 Aligned_cols=39 Identities=33% Similarity=0.455 Sum_probs=33.7
Q ss_pred CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.|++++|.|+ |+.|.+++..+...|++|+++.++.++.+
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 183 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAE 183 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 5789999995 89999999999999999999998876643
No 445
>PRK08227 autoinducer 2 aldolase; Validated
Probab=80.81 E-value=22 Score=34.71 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=73.7
Q ss_pred HHHHHHHHhhhhcCCCEEEEEecCCCCCCchhHHHH---HHh---hCCCcEEEEeccCCCCCCCCCCHHHHHH-HHHHHH
Q 014691 36 DKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT---LIK---ESPVPTLFTYRPIWEGGQYDGDENERVD-VLRLAM 108 (420)
Q Consensus 36 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~---l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~-ll~~~~ 108 (420)
+.+...+++++..|||+|=.-+-.=.+.+ .+.++. +.+ +..+|+|. +- ..|.... ++...+. .-+.+.
T Consensus 94 ~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E-~~~l~~l~~v~~ea~~~G~Plla-~~--prG~~~~-~~~~~ia~aaRiaa 168 (264)
T PRK08227 94 EAVAVDMEDAVRLNACAVAAQVFIGSEYE-HQSIKNIIQLVDAGLRYGMPVMA-VT--AVGKDMV-RDARYFSLATRIAA 168 (264)
T ss_pred ccceecHHHHHHCCCCEEEEEEecCCHHH-HHHHHHHHHHHHHHHHhCCcEEE-Ee--cCCCCcC-chHHHHHHHHHHHH
Confidence 44455566777889999988886554322 234443 333 35899987 22 3344433 3333433 356677
Q ss_pred HhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCC
Q 014691 109 ELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGAD 168 (420)
Q Consensus 109 ~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaD 168 (420)
++|+|.|-+.+.- +-++++.. ...++|+++= -.++ +.+++.+..++..+.||.
T Consensus 169 ELGADiVK~~y~~--~~f~~vv~--a~~vPVviaG--G~k~-~~~~~L~~v~~ai~aGa~ 221 (264)
T PRK08227 169 EMGAQIIKTYYVE--EGFERITA--GCPVPIVIAG--GKKL-PERDALEMCYQAIDEGAS 221 (264)
T ss_pred HHcCCEEecCCCH--HHHHHHHH--cCCCcEEEeC--CCCC-CHHHHHHHHHHHHHcCCc
Confidence 8999999988853 44555654 3567888762 1222 456777777777777764
No 446
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=80.80 E-value=2.2 Score=44.71 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=33.3
Q ss_pred CEEEEEcc-chHHHHHHHHHHhC-------CC--eEEEEeCChhhhh
Q 014691 382 KLFVVIGA-GGAGKALAYGAKAK-------GA--RVVIANRTYENLQ 418 (420)
Q Consensus 382 k~vlviGa-GGaara~~~aL~~~-------g~--~i~v~nR~~~ka~ 418 (420)
-+|.|+|+ |.+|.+++|.|... |. ++.+++++.++++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~ 147 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALE 147 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhH
Confidence 37999999 99999999999988 76 8999999988876
No 447
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.73 E-value=2.9 Score=39.90 Aligned_cols=38 Identities=37% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENL 417 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka 417 (420)
+|.+++|.|+|++|.+++..+...|++ |+++.++.++.
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~ 135 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARR 135 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHH
Confidence 578999999999999999989999996 99988887664
No 448
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=80.53 E-value=1.2 Score=44.83 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=31.3
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.+++.+|||+|+||-|.-++..|+..|+ ++-|++-+
T Consensus 63 ~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~D 99 (427)
T KOG2017|consen 63 SLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYD 99 (427)
T ss_pred ccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccc
Confidence 4667789999999999999999999998 88877744
No 449
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=80.45 E-value=65 Score=32.07 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=85.8
Q ss_pred EEeeeccCccccccHHHHHHHHHHcCCCceeecccc------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHH
Q 014691 255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV 328 (420)
Q Consensus 255 ~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~ 328 (420)
.+-+|=.| .+|+-.=|..+...||-...|..-.. +.+++..+.+..-++.++-+=.|-...+..+...
T Consensus 48 ~~~lF~~p--STRTR~SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~---- 121 (305)
T PRK00856 48 VANLFFEP--STRTRLSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAES---- 121 (305)
T ss_pred EEEEeccC--CcchHHHHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHH----
Confidence 34466666 56777888999999999887764321 5788888877665577777776644432222221
Q ss_pred HHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccc---hHHHHHHHHHHhCCC
Q 014691 329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG---GAGKALAYGAKAKGA 405 (420)
Q Consensus 329 A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaG---Gaara~~~aL~~~g~ 405 (420)
+ .+ .|++-. +| ..-+=|-...=+.++.+.. ..++|++++++|-+ .++++.+.++..+|+
T Consensus 122 ~-~v----PVINa~-~g-~~~HPtQ~LaDl~Ti~e~~-----------G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~ 183 (305)
T PRK00856 122 S-DV----PVINAG-DG-SHQHPTQALLDLLTIREEF-----------GRLEGLKVAIVGDIKHSRVARSNIQALTRLGA 183 (305)
T ss_pred C-CC----CEEECC-CC-CCCCcHHHHHHHHHHHHHh-----------CCCCCCEEEEECCCCCCcHHHHHHHHHHHcCC
Confidence 1 11 233320 22 1233444444445555543 35789999999985 799999999999999
Q ss_pred eEEEEeC
Q 014691 406 RVVIANR 412 (420)
Q Consensus 406 ~i~v~nR 412 (420)
+++++.-
T Consensus 184 ~~~~~~P 190 (305)
T PRK00856 184 EVRLIAP 190 (305)
T ss_pred EEEEECC
Confidence 9888763
No 450
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=80.44 E-value=63 Score=31.90 Aligned_cols=118 Identities=17% Similarity=0.239 Sum_probs=74.1
Q ss_pred HHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc---------------cchhHHHh---
Q 014691 69 IKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA---------------REFNDSIR--- 130 (420)
Q Consensus 69 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---------------~~~~~~l~--- 130 (420)
++.+.+..++|+++-+.+ |.- +...-....+...+.|+..|-||-... +++...|.
T Consensus 65 ~~~I~~~~~iPviaD~d~----GyG--~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~ 138 (285)
T TIGR02317 65 ARRITRVTDLPLLVDADT----GFG--EAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAV 138 (285)
T ss_pred HHHHHhccCCCEEEECCC----CCC--CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHH
Confidence 444455678999988764 432 244455678888899999999998641 12334443
Q ss_pred hcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCE
Q 014691 131 GKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPI 196 (420)
Q Consensus 131 ~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~ 196 (420)
.++...--+|.-.-|--.....+|..++.+.-.+.|||.+=+-. +++.+++.++-+.+ +.|+
T Consensus 139 ~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g-~~~~e~i~~~~~~i---~~Pl 200 (285)
T TIGR02317 139 DAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEA-LTSLEEFRQFAKAV---KVPL 200 (285)
T ss_pred HhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHhc---CCCE
Confidence 22222224455555532334577888888888889999987743 56777776555443 4565
No 451
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=80.40 E-value=2.5 Score=41.67 Aligned_cols=39 Identities=41% Similarity=0.612 Sum_probs=33.0
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.|+++||.|+|++|.+++..+...|++++.+.++.++.+
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~ 197 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLE 197 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHH
Confidence 467999999999999999888899999888878766653
No 452
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=80.39 E-value=18 Score=36.27 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=56.1
Q ss_pred EEEeecCCCHHHHHHHHHhhhhcCCCEEEEEecCCC------CCCc----hhHHHHHHhhCCCcEEEEeccCCCCCCCCC
Q 014691 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLK------NFNP----RENIKTLIKESPVPTLFTYRPIWEGGQYDG 95 (420)
Q Consensus 26 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~------~~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~ 95 (420)
+.+.|.+.+.++..+-++.+.+.|+|+||+-+-+-+ ..+. .+.++.+++..++|+++-++. .+
T Consensus 104 vi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p-----~~-- 176 (334)
T PRK07565 104 VIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP-----YF-- 176 (334)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC-----Cc--
Confidence 456889999999888787777789999999553311 1111 123345555568999988873 11
Q ss_pred CHHHHHHHHHHHHHhCCcEEEEE
Q 014691 96 DENERVDVLRLAMELGADYIDVE 118 (420)
Q Consensus 96 ~~~~~~~ll~~~~~~~~d~iDiE 118 (420)
+ +..++.+.+.+.|+|+|.+=
T Consensus 177 ~--~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 177 S--NLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred h--hHHHHHHHHHHcCCCeEEEE
Confidence 1 23456667778899999773
No 453
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=80.33 E-value=2.6 Score=43.77 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
+++++|||+|.+|-.++..|..+|.+|+++.|..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5789999999999999999999999999998853
No 454
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=80.12 E-value=58 Score=31.30 Aligned_cols=195 Identities=15% Similarity=0.207 Sum_probs=108.4
Q ss_pred CHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHHhhC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh
Q 014691 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLIKES-PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110 (420)
Q Consensus 34 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 110 (420)
+.++.++-++...+.|+|.||+= ++...+ .+.++.+.+.. +..+..-.|. .. +-++.+.+.
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g---~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~---------~~----~~v~~a~~~ 81 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVG---IPAMGEEEREAIRAIVALGLPARLIVWCRA---------VK----EDIEAALRC 81 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe---cCCCCHHHHHHHHHHHhcCCCCEEEEeccC---------CH----HHHHHHHhC
Confidence 44555555555567899999994 222222 23455554322 2233333332 11 124567788
Q ss_pred CCcEEEEEcccccch------------h----HHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Q 014691 111 GADYIDVELQVAREF------------N----DSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFAT 174 (420)
Q Consensus 111 ~~d~iDiEl~~~~~~------------~----~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~ 174 (420)
|+++|-+-...++.. + +.+...+..+..+.++.=+...+ +.+.+.+.++++.+.|+|.+-|+=
T Consensus 82 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l~D 160 (259)
T cd07939 82 GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRA-DPDFLIEFAEVAQEAGADRLRFAD 160 (259)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCC-CHHHHHHHHHHHHHCCCCEEEeCC
Confidence 999988865443221 1 11122344566776666443333 468899999999999999988875
Q ss_pred ec--CCHHHHHHHHHHhcc-CCCCEEEEecCCcc--hhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhc
Q 014691 175 TA--LDITDVARVFQITVH-SQVPIIGLVMGERG--LISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246 (420)
Q Consensus 175 ~~--~s~~D~~~ll~~~~~-~~~p~I~~~MG~~G--~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~ 246 (420)
+. -+++++.+++..+.+ .+.|+-..+=-..| ...=+..-.-|..+.=+++..- .-+.|.++.+++...++.
T Consensus 161 T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~-G~~aGN~~tE~lv~~l~~ 236 (259)
T cd07939 161 TVGILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGL-GERAGNAALEEVVMALKH 236 (259)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc-cccccCcCHHHHHHHHHH
Confidence 44 468999888886553 24454433222222 2222222233433333343321 246888888887766653
No 455
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=79.89 E-value=14 Score=35.75 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=64.2
Q ss_pred EEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEcccc-------------cchhHHHhhcCCCCcEEEEEcccCCC
Q 014691 82 FTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVA-------------REFNDSIRGKKPEKCKVIVSSHNYQY 148 (420)
Q Consensus 82 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~-------------~~~~~~l~~~~~~~~kiI~S~H~f~~ 148 (420)
+|-.+..+||.+. +.+.-.+..+..++.|+++|||=.... +++...+...+ ...++.+|.=
T Consensus 9 ~t~dsf~~~~~~~-~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~-~~~~~piSID---- 82 (258)
T cd00423 9 VTPDSFSDGGKFL-SLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALA-GEPDVPISVD---- 82 (258)
T ss_pred CCCCchhhccccC-CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHH-hcCCCeEEEe----
Confidence 3556667888754 555566666666788999999965433 11111111221 2224445543
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccCCCCEEEEecCCcch
Q 014691 149 TPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGL 206 (420)
Q Consensus 149 tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~~~p~I~~~MG~~G~ 206 (420)
|.+. +.++.+.+.|++++==+..-+.. ..++.+.++.+.|+|.+.|...|.
T Consensus 83 T~~~----~v~~aaL~~g~~iINdis~~~~~---~~~~~l~~~~~~~vV~m~~~~~~~ 133 (258)
T cd00423 83 TFNA----EVAEAALKAGADIINDVSGGRGD---PEMAPLAAEYGAPVVLMHMDGTPQ 133 (258)
T ss_pred CCcH----HHHHHHHHhCCCEEEeCCCCCCC---hHHHHHHHHcCCCEEEECcCCCCc
Confidence 3333 33555556678876544332211 455667777788999999976553
No 456
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=79.85 E-value=14 Score=38.04 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHhCCcEEEEEcc
Q 014691 96 DENERVDVLRLAMELGADYIDVELQ 120 (420)
Q Consensus 96 ~~~~~~~ll~~~~~~~~d~iDiEl~ 120 (420)
+.++..++.+.+.+.|+|||+|-..
T Consensus 250 ~~e~~~~~~~~l~~~gvD~l~vs~g 274 (382)
T cd02931 250 DLEEGLKAAKILEEAGYDALDVDAG 274 (382)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 5577788888888889999999643
No 457
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=79.74 E-value=2.9 Score=40.07 Aligned_cols=38 Identities=39% Similarity=0.516 Sum_probs=32.6
Q ss_pred CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhh
Q 014691 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENL 417 (420)
Q Consensus 380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka 417 (420)
.+++++|.|+ |+.+++++..+...|++|+++.++.++.
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~ 177 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKL 177 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence 4789999996 7899999999999999988888876554
No 458
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=79.68 E-value=3.2 Score=40.06 Aligned_cols=38 Identities=45% Similarity=0.497 Sum_probs=32.9
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENL 417 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka 417 (420)
.+.+++|.|+|++|.+++..+...|++ |+++.++.++.
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~ 167 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARL 167 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH
Confidence 467899999999999999888999996 99999887654
No 459
>PLN02702 L-idonate 5-dehydrogenase
Probab=79.63 E-value=3.3 Score=41.56 Aligned_cols=38 Identities=37% Similarity=0.479 Sum_probs=32.3
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENL 417 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka 417 (420)
.|++++|+|+|+.|.+++..+..+|+ .|++++++.+|.
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~ 219 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERL 219 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 47799999999999999999999999 678888776654
No 460
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=79.41 E-value=25 Score=35.41 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=83.5
Q ss_pred EEeeeccCccccccHHHHHHHHHHcCCCceeecccc------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHH
Q 014691 255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV 328 (420)
Q Consensus 255 ~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~ 328 (420)
.+-+|=.|= +|+-.=|..+.+.||....|..... +++.+.++.+... +.++-+=-|--..+ .+.
T Consensus 49 v~~lF~epS--TRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y-~D~iviR~~~~~~~-------~~~ 118 (331)
T PRK02102 49 IALIFEKTS--TRTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRM-YDGIEYRGFKQEIV-------EEL 118 (331)
T ss_pred EEEEeCCCC--hhHHHHHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhc-CCEEEEECCchHHH-------HHH
Confidence 334555554 4666677889999999988774332 4788888777443 67776666533322 222
Q ss_pred HHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEccc--hHHHHHHHHHHhCCCe
Q 014691 329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG--GAGKALAYGAKAKGAR 406 (420)
Q Consensus 329 A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGaG--Gaara~~~aL~~~g~~ 406 (420)
|+..+ + -|++-. ++ ..+=|-...=+.++++.. ..++|++++++|.+ +++++.++++..+|++
T Consensus 119 a~~~~-v-PVINa~-~~--~~HPtQaLaDl~Ti~e~~-----------g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~ 182 (331)
T PRK02102 119 AKYSG-V-PVWNGL-TD--EWHPTQMLADFMTMKEHF-----------GPLKGLKLAYVGDGRNNMANSLMVGGAKLGMD 182 (331)
T ss_pred HHhCC-C-CEEECC-CC--CCChHHHHHHHHHHHHHh-----------CCCCCCEEEEECCCcccHHHHHHHHHHHcCCE
Confidence 22221 1 233431 22 234444444455555543 35789999999997 7999999999999999
Q ss_pred EEEEeC
Q 014691 407 VVIANR 412 (420)
Q Consensus 407 i~v~nR 412 (420)
|+++.-
T Consensus 183 v~~~~P 188 (331)
T PRK02102 183 VRICAP 188 (331)
T ss_pred EEEECC
Confidence 988863
No 461
>PLN02507 glutathione reductase
Probab=79.31 E-value=2.4 Score=45.06 Aligned_cols=30 Identities=37% Similarity=0.364 Sum_probs=28.6
Q ss_pred EEEEEccchHHHHHHHHHHhCCCeEEEEeC
Q 014691 383 LFVVIGAGGAGKALAYGAKAKGARVVIANR 412 (420)
Q Consensus 383 ~vlviGaGGaara~~~aL~~~g~~i~v~nR 412 (420)
.++|||+|.+|.+++..+.++|.+|.|+.+
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 599999999999999999999999999996
No 462
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=79.30 E-value=2.9 Score=42.07 Aligned_cols=35 Identities=40% Similarity=0.476 Sum_probs=30.9
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRT 413 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~ 413 (420)
.++++++|+|+|-+|-.++..|...|+ +|+|+.|.
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 358899999999999999999999999 59999874
No 463
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=79.18 E-value=2.4 Score=47.73 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=30.6
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
+.++|+|||||-+|.++++.|.+.|.+|+|+..+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~ 270 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGR 270 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecc
Confidence 4578999999999999999999999999988764
No 464
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=79.13 E-value=3.1 Score=42.14 Aligned_cols=42 Identities=33% Similarity=0.423 Sum_probs=37.8
Q ss_pred cccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 377 ~~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.-+.||.|+|.|=|-.||.++..|..+|++|.|..-++-+|-
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~Al 246 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRAL 246 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHH
Confidence 456899999999999999999999999999999998877763
No 465
>PLN02858 fructose-bisphosphate aldolase
Probab=79.12 E-value=2.3 Score=50.70 Aligned_cols=39 Identities=23% Similarity=0.100 Sum_probs=35.7
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
.+++-+||.|-+|.+++..|...|.+|+++||+.++++.
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~ 362 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVR 362 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 368999999999999999999999999999999988764
No 466
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=79.08 E-value=3.2 Score=39.96 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=31.5
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.++++++|+|+|-+|--++..|.+.|.+|+++.|..
T Consensus 139 ~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 139 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 357899999999999999999999888999998754
No 467
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=78.93 E-value=2.6 Score=34.24 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=29.1
Q ss_pred CCEEEEEccchHHHHHHHHHH-hCCC-eEEEEeCChhhh
Q 014691 381 GKLFVVIGAGGAGKALAYGAK-AKGA-RVVIANRTYENL 417 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~-~~g~-~i~v~nR~~~ka 417 (420)
..+++|+|+|+.|++.+|.+. ..|+ -+.+++.++++.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~ 41 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI 41 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc
Confidence 358999999999999987764 5577 577888887754
No 468
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=78.86 E-value=3.1 Score=42.15 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=31.2
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+++++|||+|-+|-.++..|...|.+|+++.|..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 36899999999999999999999999999998753
No 469
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=78.85 E-value=9.3 Score=42.91 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=48.5
Q ss_pred ecCCCHHHHHHH----HHhhhhcCCCEEEEEecC------------------CCCC-Cc-----hhHHHHHHhhC--CCc
Q 014691 30 IMGESVDKMVVD----MGKANASGADLVEIRLDG------------------LKNF-NP-----RENIKTLIKES--PVP 79 (420)
Q Consensus 30 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~------------------l~~~-~~-----~~~l~~l~~~~--~~P 79 (420)
++-.++++++++ ++++.+.|.|.||+-.-+ +... ++ .+.++.+++.. +.|
T Consensus 541 mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~ 620 (765)
T PRK08255 541 MTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKP 620 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCe
Confidence 334444444433 344556899999996552 2110 11 12333444433 345
Q ss_pred EEEEeccC--CCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEc
Q 014691 80 TLFTYRPI--WEGGQYDGDENERVDVLRLAMELGADYIDVEL 119 (420)
Q Consensus 80 iI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl 119 (420)
|-+-++.. .+|| .+.++..++.+.+.+.|+|||||-.
T Consensus 621 v~~ri~~~~~~~~g---~~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 621 MSVRISAHDWVEGG---NTPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred eEEEEccccccCCC---CCHHHHHHHHHHHHhcCCcEEEeCC
Confidence 55444431 2233 2556777888888888999999964
No 470
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=78.71 E-value=3.2 Score=41.83 Aligned_cols=39 Identities=31% Similarity=0.611 Sum_probs=33.1
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|.+++|+|+|++|.+++..+...|+ .|+++.++.++.+
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~ 222 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFE 222 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence 47899999999999999988889999 6888888776643
No 471
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=78.70 E-value=3 Score=43.82 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.++++|||+|.+|-.++..|.++|.+|+++.|..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4799999999999999999999999999998864
No 472
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.70 E-value=2.4 Score=46.40 Aligned_cols=39 Identities=10% Similarity=0.270 Sum_probs=35.8
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
.++++|+|.|..|+.++..|.+.|.++++++.|+++.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~ 438 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIET 438 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHH
Confidence 368999999999999999999999999999999998764
No 473
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=78.67 E-value=3.7 Score=41.83 Aligned_cols=35 Identities=37% Similarity=0.457 Sum_probs=30.3
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.|++++|.|+|++|.+++..+..+|++|+++.++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 47899999999999999998999999877777654
No 474
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=78.66 E-value=22 Score=35.62 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=29.9
Q ss_pred hhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEEccc
Q 014691 74 KESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQV 121 (420)
Q Consensus 74 ~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~ 121 (420)
+..+.|+++.++. .+.+++.++.+.+.+.|+|+|++-+.+
T Consensus 98 ~~~~~pvi~sI~g--------~~~~e~~~~a~~~~~agad~ielN~sc 137 (334)
T PRK07565 98 EAVDIPVIASLNG--------SSAGGWVDYARQIEQAGADALELNIYY 137 (334)
T ss_pred HhcCCcEEEEecc--------CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4457899999963 244677777777777889999887765
No 475
>PLN00016 RNA-binding protein; Provisional
Probab=78.57 E-value=2.6 Score=42.83 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCCEEEEE----cc-chHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 380 AGKLFVVI----GA-GGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 380 ~~k~vlvi----Ga-GGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
..++|||+ |+ |..|+.++..|.+.|.+|+++.|+.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45789999 86 779999999999999999999998654
No 476
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=78.43 E-value=21 Score=35.74 Aligned_cols=76 Identities=26% Similarity=0.336 Sum_probs=45.3
Q ss_pred HHHHhhhhcCCCEEEEEecC-------CCC---CC-c-------------hhHHHHHHhhC--CCcEEEEeccC--CCCC
Q 014691 40 VDMGKANASGADLVEIRLDG-------LKN---FN-P-------------RENIKTLIKES--PVPTLFTYRPI--WEGG 91 (420)
Q Consensus 40 ~~~~~~~~~~~D~vElRlD~-------l~~---~~-~-------------~~~l~~l~~~~--~~PiI~T~R~~--~eGG 91 (420)
..++++.+.|.|.||+-.-+ |.. .. + .+.++.+++.. +.|+.+-++.. .++|
T Consensus 158 ~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g 237 (336)
T cd02932 158 AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGG 237 (336)
T ss_pred HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCC
Confidence 33445566899999998743 111 10 0 13455555555 55666555532 2233
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEEE
Q 014691 92 QYDGDENERVDVLRLAMELGADYIDVE 118 (420)
Q Consensus 92 ~~~~~~~~~~~ll~~~~~~~~d~iDiE 118 (420)
. +.++..++.+.+.+.|+|||+|-
T Consensus 238 ~---~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 238 W---DLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred C---CHHHHHHHHHHHHHcCCCEEEEC
Confidence 2 45677788888888899999873
No 477
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=78.42 E-value=3.5 Score=40.10 Aligned_cols=39 Identities=36% Similarity=0.480 Sum_probs=33.1
Q ss_pred CCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+++++|.|++ +.+++++..+...|++++++.++.++.+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~ 205 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLE 205 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 46799999986 7999999999999999998888876643
No 478
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=78.42 E-value=70 Score=31.25 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHhhhhcCCCEEEEEec-CCCCC---Cc---hhHHHHHHhh-CCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 014691 32 GESVDKMVVDMGKANASGADLVEIRLD-GLKNF---NP---RENIKTLIKE-SPVPTLFTYRPIWEGGQYDGDENERVDV 103 (420)
Q Consensus 32 ~~~~~e~~~~~~~~~~~~~D~vElRlD-~l~~~---~~---~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~l 103 (420)
.-|.+|+.+++.++.+.||-+|=+-.- --... ++ .+.+..+++. .++++=.| + ||....+.++|++.
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~T--t---g~~~~~~~~~R~~~ 96 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPT--T---GGGGGPDPEERLAH 96 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEE--S---STTTTSGHHHHCTH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeC--C---CCCCCCCHHHHHHH
Confidence 347899999999999999999988765 32221 11 2345566665 46666666 2 23223466889888
Q ss_pred HHHHHHhCCcEEEEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHH
Q 014691 104 LRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVA 183 (420)
Q Consensus 104 l~~~~~~~~d~iDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~ 183 (420)
++.. .+|+.-+.+.... .+..+....-+.+.+.+.++.|.+.| +|.-...-+..++.
T Consensus 97 v~~~---~pd~asl~~gs~n-----------------~~~~~~~~~n~~~~~~~~~~~~~e~G---i~pe~ev~d~~~l~ 153 (272)
T PF05853_consen 97 VEAW---KPDMASLNPGSMN-----------------FGTRDRVYINTPADARELARRMRERG---IKPEIEVFDPGHLR 153 (272)
T ss_dssp HHHH-----SEEEEE-S-EE-----------------ESGGCSEE---HHHHHHHHHHHHHTT----EEEEEESSHHHHH
T ss_pred HHhc---CCCeEEecccccc-----------------cccCCceecCCHHHHHHHHHHHHHcC---CeEEEEEEcHHHHH
Confidence 7765 5788777665321 00112111113567899999999999 56666666888888
Q ss_pred HHHHHhcc
Q 014691 184 RVFQITVH 191 (420)
Q Consensus 184 ~ll~~~~~ 191 (420)
.+.++...
T Consensus 154 ~~~~l~~~ 161 (272)
T PF05853_consen 154 NARRLIEK 161 (272)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 77776543
No 479
>PLN02612 phytoene desaturase
Probab=78.40 E-value=3 Score=45.11 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=32.0
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~ 413 (420)
+.++++|+|||+|-+|.++++.|.+.|.+++|+.+.
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~ 125 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEAR 125 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 445678999999999999999999999999998864
No 480
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=78.28 E-value=91 Score=32.49 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=119.1
Q ss_pred HHHHHHhhCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEE-cccccc---hhHH-------Hhh-cCCC
Q 014691 68 NIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVE-LQVARE---FNDS-------IRG-KKPE 135 (420)
Q Consensus 68 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE-l~~~~~---~~~~-------l~~-~~~~ 135 (420)
-+++++...+.|++.|+=.++-| .+.+++.++......-|+|+|-=| .-.++. +.++ +.. ....
T Consensus 121 G~R~~lgv~~RPL~gtiiKP~~G----lsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eT 196 (412)
T cd08213 121 GVREILGIKDRPLLGTVPKPKVG----LSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAET 196 (412)
T ss_pred hHHHHhCCCCCCeEEeecCcccC----CCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 35555555689999997665443 367888888888888788877433 222111 1111 111 2234
Q ss_pred CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhccC---------------CCCEEEEe
Q 014691 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHS---------------QVPIIGLV 200 (420)
Q Consensus 136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~~---------------~~p~I~~~ 200 (420)
+.+.+-+.+- |-+.+|+.+..+.+.+.|++++-+.+..-...=+..|-+..... ..|--.|+
T Consensus 197 G~~~~y~~Ni---T~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ihaHra~~ga~~r~~~~Gis 273 (412)
T cd08213 197 GERKAYLANI---TAPVREMERRAELVADLGGKYVMIDVVVAGWSALQYLRDLAEDYGLAIHAHRAMHAAFTRNPRHGIS 273 (412)
T ss_pred CCcceEEEEe---cCCHHHHHHHHHHHHHhCCCeEEeeccccChHHHHHHHHhccccCeEEEECCCcceecccCCcCcCc
Confidence 5555655443 44478999999999999999999999988777766665532222 22444566
Q ss_pred cCCcchhhhhhccccCCcccccccCCCccCCCCCCCHHhHHHHHhcccc----------------CCCceEEeeeccCcc
Q 014691 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQM----------------GPDTKVFGIIGKPVG 264 (420)
Q Consensus 201 MG~~G~~SRi~~~~~Gs~ltf~~~~~~~~sAPGQ~~~~~l~~~~~~~~~----------------~~~~~~~~v~G~pv~ 264 (420)
|-.+|++.|+++- ..+.|.+... .-++ +-++...+.+.... ..-.+.+-+.+.
T Consensus 274 ~~~l~kl~RLaGa---D~ih~~t~~G---k~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv~sG--- 342 (412)
T cd08213 274 MLVLAKLYRLIGV---DQLHIGTAVG---KMEG--DKEEVLRIADILREQKYKPDEEDFHLAQDWGGIKPVFPVASG--- 342 (412)
T ss_pred HHHHHHHHHHcCC---CccccCCccC---CcCC--CHHHHHHHHHHHHhccccccchhccccCccccCCCceEecCC---
Confidence 6667888888763 4445554432 1222 22333333332110 111334555554
Q ss_pred ccccHHHHHHHHHHcCCCceeec
Q 014691 265 HSKSPILYNEAFKSVGFNGVFVH 287 (420)
Q Consensus 265 hS~SP~ihn~~f~~~gl~~~y~~ 287 (420)
..+|..-...++.+|-|..|..
T Consensus 343 -G~~~~~~p~~~~~~G~Dvil~~ 364 (412)
T cd08213 343 -GLHPGLVPDVIDILGKDIVIQV 364 (412)
T ss_pred -CCChhHHHHHHHHhCCceEEec
Confidence 3466777778889998877663
No 481
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=78.27 E-value=70 Score=31.79 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=83.0
Q ss_pred EEeeeccCccccccHHHHHHHHHHcCCCceeecccc------ccHHHHHHHhcCCCCCEEEEcccchHHHHhhhhcccHH
Q 014691 255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV------DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTV 328 (420)
Q Consensus 255 ~~~v~G~pv~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l~~~~~~~~~~~~~G~~VT~P~K~~i~~~~d~l~~~ 328 (420)
.+-+|=.|= +|+-.=|..+.+.||....|..... +++.+.+..+... +.++-+=-|....+-. .
T Consensus 46 v~~lF~e~S--TRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~-~D~iv~R~~~~~~~~~-------~ 115 (304)
T PRK00779 46 LAMIFEKPS--TRTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRY-VDAIMIRTFEHETLEE-------L 115 (304)
T ss_pred EEEEecCCC--chHHHHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHh-CCEEEEcCCChhHHHH-------H
Confidence 444555554 4666778899999999888875332 4688877777444 6666555554333222 2
Q ss_pred HHHhcceeEEEEeccCCeEEEEecCHHHHHHHHHhhhccCCCCCCCcccccCCCEEEEEcc-chHHHHHHHHHHhCCCeE
Q 014691 329 AKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARV 407 (420)
Q Consensus 329 A~~iGAvNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~k~vlviGa-GGaara~~~aL~~~g~~i 407 (420)
|+..+. -|++- .+ -..+=|-...=+.+|.+.+ ..++|.+++++|. +.++++.+.+|..+|++|
T Consensus 116 a~~~~v--PVINa--g~-~~~HPtQaL~Dl~Ti~e~~-----------g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v 179 (304)
T PRK00779 116 AEYSTV--PVING--LT-DLSHPCQILADLLTIYEHR-----------GSLKGLKVAWVGDGNNVANSLLLAAALLGFDL 179 (304)
T ss_pred HHhCCC--CEEeC--CC-CCCChHHHHHHHHHHHHHh-----------CCcCCcEEEEEeCCCccHHHHHHHHHHcCCEE
Confidence 332221 34443 11 1244444333344555443 3478999999998 679999999999999998
Q ss_pred EEEeC
Q 014691 408 VIANR 412 (420)
Q Consensus 408 ~v~nR 412 (420)
+++.-
T Consensus 180 ~~~~P 184 (304)
T PRK00779 180 RVATP 184 (304)
T ss_pred EEECC
Confidence 88763
No 482
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.24 E-value=3.4 Score=39.85 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
.+++++|.|+ |+++++++..+...|++++++.++.++.+
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~ 183 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRD 183 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 4678999997 89999999999999999888888776543
No 483
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=77.89 E-value=3.5 Score=39.41 Aligned_cols=39 Identities=36% Similarity=0.396 Sum_probs=32.8
Q ss_pred CCCEEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 380 AGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviG-aGGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
+|++++|.| +|+++.+++..+..+|++|+.+.++.++.+
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 175 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAE 175 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 578999999 589999999988999998888888766543
No 484
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.81 E-value=4.3 Score=40.41 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=32.6
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENL 417 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka 417 (420)
.|++++|.|+|++|.+++..+...|+ .+++++++.++.
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~ 204 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRV 204 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Confidence 47899999999999999988889999 688888876653
No 485
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=77.79 E-value=4.2 Score=40.99 Aligned_cols=39 Identities=41% Similarity=0.627 Sum_probs=35.1
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~nR~~~ka~ 418 (420)
.|.++.|+|.||+|.|++..+...|+ +|.-++.+++|-+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~ 224 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLE 224 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHH
Confidence 47799999999999999999999999 8999999888743
No 486
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=77.79 E-value=3.5 Score=42.56 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=31.2
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.+++++|+|+|.+|-.++..|.+.|.+|+++.|..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 46899999999999999999999999999998764
No 487
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=77.70 E-value=3.7 Score=42.46 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=36.4
Q ss_pred cCCCEEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhhhhcC
Q 014691 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYENLQRL 420 (420)
Q Consensus 379 ~~~k~vlviGaG-Gaara~~~aL~~~g~~i~v~nR~~~ka~~L 420 (420)
.+-..|+|.||+ ++||-++..|.+.|..+.-.-|+.++++++
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~ 119 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDL 119 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhh
Confidence 455789999985 599999999999999899999999998764
No 488
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=77.68 E-value=2.3 Score=49.06 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=31.7
Q ss_pred ccCCCEEEEEccchHHHHHHHHHHhCCC------eEEEEeCC
Q 014691 378 ALAGKLFVVIGAGGAGKALAYGAKAKGA------RVVIANRT 413 (420)
Q Consensus 378 ~~~~k~vlviGaGGaara~~~aL~~~g~------~i~v~nR~ 413 (420)
.++..+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 416 kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D 457 (1008)
T TIGR01408 416 KLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPD 457 (1008)
T ss_pred HHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCC
Confidence 3566799999999999999999999997 79999864
No 489
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.66 E-value=2.8 Score=41.89 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=32.9
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYEN 416 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~k 416 (420)
.|+++.|+|+||.|.-++.....+|.+|+++++...+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence 5899999999999998888888899999999998644
No 490
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.55 E-value=3.3 Score=41.05 Aligned_cols=39 Identities=38% Similarity=0.440 Sum_probs=32.9
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhhhh
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYENLQ 418 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~~-i~v~nR~~~ka~ 418 (420)
+|++++|.|+|++|.+++.-+...|++ |+++.++.++.+
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~ 201 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLE 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 578999999999999998888899995 888888766643
No 491
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=77.54 E-value=2.7 Score=45.77 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=35.2
Q ss_pred CEEEEEccchHHHHHHHHHHhCCCeEEEEeCChhhhhc
Q 014691 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYENLQR 419 (420)
Q Consensus 382 k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~~ka~~ 419 (420)
.+++|+|.|..|+.++..|.+.|.++++++.|+++.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~ 438 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNL 438 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHH
Confidence 47999999999999999999999999999999998764
No 492
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=77.30 E-value=3.9 Score=39.79 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCEEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhhhh
Q 014691 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYENLQ 418 (420)
Q Consensus 381 ~k~vlviGa-GGaara~~~aL~~~g~~i~v~nR~~~ka~ 418 (420)
+.+++|.|+ |++|.+++..+...|++|+++.++.++.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~ 185 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQAD 185 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 458999998 99999999988899999998988876643
No 493
>PRK06370 mercuric reductase; Validated
Probab=77.29 E-value=3.5 Score=43.08 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.3
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
+++++|||+|-+|-.++..|...|.+|+++.|..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 5899999999999999999999999999999864
No 494
>PLN02852 ferredoxin-NADP+ reductase
Probab=77.27 E-value=3.6 Score=43.70 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCCEEEEEccchHHHHHHHHHHhC--------------------CC-eEEEEeCC
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAK--------------------GA-RVVIANRT 413 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~--------------------g~-~i~v~nR~ 413 (420)
.+++|+|||+|.+|--++..|... |+ +|+|+.|.
T Consensus 165 ~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RR 219 (491)
T PLN02852 165 SSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRR 219 (491)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcC
Confidence 589999999999999888887766 88 89999984
No 495
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=77.23 E-value=2.8 Score=45.39 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=27.7
Q ss_pred CCCEEEEEccchHHHHHHHHHHhCCC-eEEEE
Q 014691 380 AGKLFVVIGAGGAGKALAYGAKAKGA-RVVIA 410 (420)
Q Consensus 380 ~~k~vlviGaGGaara~~~aL~~~g~-~i~v~ 410 (420)
+..+|+|+|.||.+..+++.|...|+ +|..+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~v 159 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAI 159 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEE
Confidence 56789999999999999999999999 77555
No 496
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=77.23 E-value=8.8 Score=37.60 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHhCCcEEEEEcccc---------------cchhHHHhh-cCCCCcEEEEEcccCCCC---CCHHH
Q 014691 94 DGDENERVDVLRLAMELGADYIDVELQVA---------------REFNDSIRG-KKPEKCKVIVSSHNYQYT---PSVED 154 (420)
Q Consensus 94 ~~~~~~~~~ll~~~~~~~~d~iDiEl~~~---------------~~~~~~l~~-~~~~~~kiI~S~H~f~~t---P~~~e 154 (420)
..+-+.+.+....|.+.|.+|+=|+..+. ...+++|+. ++..+++|++=.|.-... +-..+
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~ 107 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQ 107 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHH
Confidence 44667788889999999999999987663 345667764 456899998888853200 11223
Q ss_pred HHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHH
Q 014691 155 LSNLVARIQASGADIVKFATTALDITDVARVFQ 187 (420)
Q Consensus 155 l~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~ 187 (420)
+.+.+.++++.|..-||+=.+..+.+...+..+
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~ 140 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYE 140 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHH
Confidence 688899999999999999999998877766544
No 497
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=77.22 E-value=8.9 Score=41.18 Aligned_cols=61 Identities=16% Similarity=0.306 Sum_probs=40.9
Q ss_pred CcEEEEEcccCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCHHHHHHHHHHhcc-----CCCCEEE
Q 014691 136 KCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVH-----SQVPIIG 198 (420)
Q Consensus 136 ~~kiI~S~H~f~~tP~~~el~~~~~~~~~~gaDivKia~~~~s~~D~~~ll~~~~~-----~~~p~I~ 198 (420)
+..|.+-.=....|-+.+...+.+.++.+.|||||++++. +.+|...+-..... .++|++|
T Consensus 28 ~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp--~~~~A~al~~I~~~L~~~g~~iPLVA 93 (606)
T PRK00694 28 EHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQ--GLKEAQACEHIKERLIQQGISIPLVA 93 (606)
T ss_pred CCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHHHHhccCCCCCEEe
Confidence 3444433333334556777888889999999999999998 55555555544333 4788876
No 498
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=77.21 E-value=90 Score=33.37 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=80.9
Q ss_pred cccccccCCCCCCcEEEEee-cCCCHHHHHHHHHhhhhcCCCEEEEEecCCCCCCc--hhHHHHHHhhCCCcEEEEeccC
Q 014691 11 GSKLVSGGMRKNPTLICVPI-MGESVDKMVVDMGKANASGADLVEIRLDGLKNFNP--RENIKTLIKESPVPTLFTYRPI 87 (420)
Q Consensus 11 ~~~~~~~~~~~~~~~icv~l-~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~T~R~~ 87 (420)
|.|++..- +..+|..=| -.+.++++.+++......|||+|-+=.-.-.+... ...++.+.+..+.|+ .+-|.
T Consensus 142 ~~~i~~~~---p~~~v~aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pI--SIDT~ 216 (499)
T TIGR00284 142 SLKIPLKP---PPLRVVAEIPPTVAEDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSPV--IADTP 216 (499)
T ss_pred CcCCCCCC---CCeEEEEEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcE--EEeCC
Confidence 66655332 112344433 45667888888888889999999887654422110 122333333335564 44431
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCcEE-EEEcccccchhHHHhhcCCCCcEEEEEcccCCCCCCHHHHHHHHHHHHHcC
Q 014691 88 WEGGQYDGDENERVDVLRLAMELGADYI-DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASG 166 (420)
Q Consensus 88 ~eGG~~~~~~~~~~~ll~~~~~~~~d~i-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tP~~~el~~~~~~~~~~g 166 (420)
.-+.+++|++.|+++| ||+....++... +.. ..+..+|+-+. +..+..+.+.+.++++.+.|
T Consensus 217 ------------~~~v~eaAL~aGAdiINsVs~~~~d~~~~-l~a--~~g~~vVlm~~--~~~~~~~~l~~~ie~a~~~G 279 (499)
T TIGR00284 217 ------------TLDELYEALKAGASGVIMPDVENAVELAS-EKK--LPEDAFVVVPG--NQPTNYEELAKAVKKLRTSG 279 (499)
T ss_pred ------------CHHHHHHHHHcCCCEEEECCccchhHHHH-HHH--HcCCeEEEEcC--CCCchHHHHHHHHHHHHHCC
Confidence 2357888999998876 343332222222 222 23556665532 23455678899999999999
Q ss_pred CCEEEEEeec
Q 014691 167 ADIVKFATTA 176 (420)
Q Consensus 167 aDivKia~~~ 176 (420)
-+ ||..=|
T Consensus 280 i~--~IIlDP 287 (499)
T TIGR00284 280 YS--KVAADP 287 (499)
T ss_pred CC--cEEEeC
Confidence 74 655444
No 499
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=77.21 E-value=3.4 Score=43.01 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCEEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 014691 381 GKLFVVIGAGGAGKALAYGAKAKGARVVIANRTY 414 (420)
Q Consensus 381 ~k~vlviGaGGaara~~~aL~~~g~~i~v~nR~~ 414 (420)
.++++|||+|.+|-.++..|.++|.+|+++.|..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 5789999999999999999999999999998864
No 500
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=77.14 E-value=2.8 Score=42.37 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=28.6
Q ss_pred cCCCEEEEEccchHHHHHHHHHHhCCC--eEEEEeCChh
Q 014691 379 LAGKLFVVIGAGGAGKALAYGAKAKGA--RVVIANRTYE 415 (420)
Q Consensus 379 ~~~k~vlviGaGGaara~~~aL~~~g~--~i~v~nR~~~ 415 (420)
.++++|+|||+|-+|..++..|.+.+. +|+.+.|+..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 457899999999999999999988775 8999999753
Done!