Query 014692
Match_columns 420
No_of_seqs 194 out of 700
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o70_A PHD finger protein 13; 99.5 1.2E-15 4.1E-20 119.7 2.4 62 113-190 6-67 (68)
2 1wep_A PHF8; structural genomi 99.5 3.2E-15 1.1E-19 120.1 1.4 69 117-198 3-73 (79)
3 1we9_A PHD finger family prote 99.4 9.4E-14 3.2E-18 107.0 2.2 56 123-191 3-59 (64)
4 3kqi_A GRC5, PHD finger protei 99.3 5.5E-14 1.9E-18 111.9 -1.6 58 121-191 5-62 (75)
5 1wem_A Death associated transc 99.3 9.3E-14 3.2E-18 110.6 -1.5 66 114-191 6-71 (76)
6 3o7a_A PHD finger protein 13 v 99.3 7.6E-13 2.6E-17 98.2 1.0 50 124-189 2-51 (52)
7 1wee_A PHD finger family prote 99.1 1.2E-11 4E-16 97.6 2.6 55 123-191 13-67 (72)
8 3lqh_A Histone-lysine N-methyl 99.1 1.6E-11 5.5E-16 113.4 1.9 68 125-198 1-71 (183)
9 2kgg_A Histone demethylase jar 99.1 1.4E-11 4.9E-16 91.3 -0.3 47 128-188 5-52 (52)
10 3kv5_D JMJC domain-containing 99.0 1.1E-11 3.8E-16 129.8 -1.8 64 115-191 26-89 (488)
11 1wew_A DNA-binding family prot 99.0 5.6E-11 1.9E-15 95.2 1.1 56 125-190 15-72 (78)
12 2rsd_A E3 SUMO-protein ligase 99.0 1.9E-10 6.5E-15 89.7 2.5 54 125-189 9-64 (68)
13 3c6w_A P28ING5, inhibitor of g 98.9 1.6E-10 5.4E-15 88.0 0.5 48 125-190 8-58 (59)
14 2g6q_A Inhibitor of growth pro 98.9 2E-10 6.9E-15 88.3 0.5 49 125-191 10-61 (62)
15 1wen_A Inhibitor of growth fam 98.9 6.6E-10 2.3E-14 87.6 3.2 49 125-191 15-66 (71)
16 3kv4_A PHD finger protein 8; e 98.9 6.1E-11 2.1E-15 122.9 -4.5 54 125-191 4-57 (447)
17 1weu_A Inhibitor of growth fam 98.9 7.3E-10 2.5E-14 91.4 2.5 49 125-191 35-86 (91)
18 2ri7_A Nucleosome-remodeling f 98.8 1.4E-10 4.7E-15 105.3 -3.3 54 125-191 7-60 (174)
19 2vnf_A ING 4, P29ING4, inhibit 98.8 5.3E-10 1.8E-14 85.3 0.3 48 125-190 9-59 (60)
20 1x4i_A Inhibitor of growth pro 98.8 6.1E-10 2.1E-14 87.6 -0.2 49 125-191 5-56 (70)
21 2k16_A Transcription initiatio 98.8 9.8E-10 3.3E-14 86.9 0.4 53 124-191 16-69 (75)
22 2vpb_A Hpygo1, pygopus homolog 98.7 1.8E-10 6.2E-15 89.4 -4.6 52 127-188 10-64 (65)
23 2xb1_A Pygopus homolog 2, B-ce 98.7 5.2E-10 1.8E-14 94.5 -2.5 53 129-191 7-62 (105)
24 2jmi_A Protein YNG1, ING1 homo 98.7 3.8E-09 1.3E-13 87.0 1.9 46 125-188 25-74 (90)
25 2lv9_A Histone-lysine N-methyl 98.7 9.5E-09 3.2E-13 85.7 3.8 51 125-191 27-77 (98)
26 3rsn_A SET1/ASH2 histone methy 98.4 2E-07 7E-12 85.3 5.1 66 123-198 2-68 (177)
27 3pur_A Lysine-specific demethy 98.3 1.8E-07 6.3E-12 98.1 2.7 40 143-190 55-94 (528)
28 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.0 9.3E-07 3.2E-11 75.4 -0.4 39 145-190 1-44 (140)
29 4bbq_A Lysine-specific demethy 97.6 1.8E-05 6.1E-10 67.1 1.7 45 143-192 72-116 (117)
30 1f62_A Transcription factor WS 97.4 4.7E-05 1.6E-09 55.4 2.1 46 130-190 5-50 (51)
31 2e6r_A Jumonji/ARID domain-con 97.3 0.0001 3.5E-09 60.6 2.7 49 127-190 17-66 (92)
32 2puy_A PHD finger protein 21A; 97.0 0.0002 7E-09 53.9 1.8 38 144-190 15-52 (60)
33 3ny3_A E3 ubiquitin-protein li 97.0 0.00048 1.6E-08 54.7 3.4 52 51-102 14-66 (75)
34 3asl_A E3 ubiquitin-protein li 96.7 0.0011 3.9E-08 51.6 3.8 40 143-190 30-69 (70)
35 2l5u_A Chromodomain-helicase-D 96.7 0.00076 2.6E-08 51.1 2.4 47 126-190 11-58 (61)
36 2l43_A N-teminal domain from h 96.6 0.00056 1.9E-08 55.7 1.6 55 126-195 26-82 (88)
37 2yql_A PHD finger protein 21A; 96.4 0.0013 4.5E-08 48.8 2.2 46 126-189 9-55 (56)
38 2ku3_A Bromodomain-containing 96.3 0.00082 2.8E-08 52.6 0.8 48 128-190 19-66 (71)
39 2e6s_A E3 ubiquitin-protein li 96.3 0.0037 1.3E-07 49.7 4.3 46 130-189 31-76 (77)
40 2yt5_A Metal-response element- 96.3 0.0014 4.7E-08 50.0 1.7 54 127-191 7-62 (66)
41 1xwh_A Autoimmune regulator; P 96.2 0.0015 5E-08 50.2 1.8 47 126-190 8-55 (66)
42 1mm2_A MI2-beta; PHD, zinc fin 96.1 0.0044 1.5E-07 46.8 3.7 39 144-191 19-57 (61)
43 3nis_A E3 ubiquitin-protein li 96.1 0.0039 1.3E-07 50.3 3.4 51 51-101 18-71 (82)
44 3shb_A E3 ubiquitin-protein li 96.0 0.0047 1.6E-07 49.1 3.8 39 143-189 38-76 (77)
45 4gne_A Histone-lysine N-methyl 95.8 0.004 1.4E-07 52.6 2.5 44 126-188 15-60 (107)
46 2lri_C Autoimmune regulator; Z 95.6 0.0047 1.6E-07 47.6 2.1 38 144-190 22-59 (66)
47 2kwj_A Zinc finger protein DPF 95.0 0.0086 3E-07 50.6 2.1 45 130-189 63-107 (114)
48 2ysm_A Myeloid/lymphoid or mix 95.0 0.0096 3.3E-07 49.8 2.3 48 128-190 56-104 (111)
49 3u5n_A E3 ubiquitin-protein li 94.9 0.016 5.3E-07 53.7 3.5 39 144-191 17-55 (207)
50 3ask_A E3 ubiquitin-protein li 94.8 0.016 5.6E-07 54.8 3.4 39 143-189 186-224 (226)
51 3o36_A Transcription intermedi 94.6 0.02 6.7E-07 52.0 3.6 39 144-191 14-52 (184)
52 3v43_A Histone acetyltransfera 94.6 0.024 8.1E-07 47.7 3.8 39 143-190 74-112 (112)
53 1fp0_A KAP-1 corepressor; PHD 94.0 0.072 2.5E-06 43.4 5.2 47 126-190 25-72 (88)
54 1wev_A Riken cDNA 1110020M19; 93.1 0.048 1.6E-06 44.1 2.7 53 126-190 16-72 (88)
55 2ro1_A Transcription intermedi 92.4 0.062 2.1E-06 49.2 2.8 38 144-190 12-49 (189)
56 2ysm_A Myeloid/lymphoid or mix 87.0 0.44 1.5E-05 39.5 3.5 44 130-188 12-55 (111)
57 3v43_A Histone acetyltransfera 78.3 0.12 4.1E-06 43.3 -3.5 40 143-188 23-62 (112)
58 2yvr_A Transcription intermedi 66.5 2.4 8.2E-05 29.7 1.6 28 54-85 18-45 (50)
59 1wil_A KIAA1045 protein; ring 65.4 4.5 0.00015 32.7 3.1 55 143-197 26-83 (89)
60 3ddt_A E3 ubiquitin-protein li 62.4 3.4 0.00012 28.7 1.8 27 55-85 19-46 (48)
61 2did_A Tripartite motif protei 61.8 4.3 0.00015 28.8 2.2 29 53-85 18-47 (53)
62 2kwj_A Zinc finger protein DPF 59.3 4.6 0.00016 33.6 2.3 22 143-164 20-41 (114)
63 2d8u_A Ubiquitin ligase TRIM63 54.3 3.4 0.00012 30.3 0.6 29 54-86 20-49 (64)
64 2csv_A Tripartite motif protei 54.2 6.2 0.00021 29.8 2.1 28 54-85 29-56 (72)
65 2dja_A Midline-2; tripartite m 53.2 4.4 0.00015 31.4 1.1 29 54-86 30-59 (84)
66 2yrg_A Tripartite motif-contai 50.4 8.6 0.00029 28.1 2.3 29 54-86 25-54 (59)
67 1fre_A Nuclear factor XNF7; zi 44.3 4.6 0.00016 27.1 -0.1 27 54-84 14-41 (42)
68 2egm_A Tripartite motif-contai 42.0 7.5 0.00026 28.2 0.8 27 54-84 29-56 (57)
69 2kmu_A ATP-dependent DNA helic 35.6 17 0.00059 26.9 1.9 31 381-411 6-38 (56)
70 1v5n_A PDI-like hypothetical p 35.1 17 0.0006 28.9 2.0 22 143-164 58-79 (89)
71 2kd1_A DNA integration/recombi 35.0 34 0.0012 26.6 3.8 30 386-415 33-65 (118)
72 2l2l_B Methyl-CPG-binding doma 33.1 29 0.001 23.5 2.5 20 399-418 5-24 (36)
73 2ly8_A Budding yeast chaperone 32.6 28 0.00094 29.7 2.9 28 380-407 69-106 (121)
74 2kj5_A Phage integrase; GFT PS 31.7 45 0.0015 25.7 4.0 30 386-415 33-65 (116)
75 2kkv_A Integrase; protein stru 30.9 36 0.0012 26.7 3.3 31 385-415 32-65 (121)
76 2khv_A Phage integrase; soluti 29.8 66 0.0023 24.7 4.7 17 399-415 45-61 (106)
77 2j9w_A VPS28, VPS28-PROV prote 28.7 79 0.0027 26.1 5.0 31 385-415 58-91 (102)
78 2lbm_A Transcriptional regulat 28.2 15 0.0005 32.2 0.5 44 143-190 72-117 (142)
79 4rxn_A Rubredoxin; electron tr 28.1 23 0.0008 25.9 1.5 41 147-189 4-44 (54)
80 2kj8_A Putative prophage CPS-5 27.9 63 0.0022 25.3 4.3 17 399-415 48-64 (118)
81 2jun_A Midline-1; B-BOX, TRIM, 27.8 20 0.00069 28.2 1.3 28 54-85 71-99 (101)
82 3viq_B Mating-type switching p 27.1 26 0.00089 28.1 1.7 37 372-408 41-77 (85)
83 2xzl_A ATP-dependent helicase 26.6 41 0.0014 36.9 3.8 62 124-197 12-87 (802)
84 2kkp_A Phage integrase; SAM-li 26.4 48 0.0017 25.4 3.3 30 386-415 35-67 (117)
85 1e8j_A Rubredoxin; iron-sulfur 26.3 71 0.0024 23.0 3.8 11 179-189 34-44 (52)
86 3lys_A Prophage PI2 protein 01 24.4 76 0.0026 24.6 4.1 28 387-415 38-65 (112)
87 2wjy_A Regulator of nonsense t 24.2 44 0.0015 36.6 3.5 62 124-197 7-82 (800)
88 1s24_A Rubredoxin 2; electron 24.1 51 0.0017 26.5 2.9 45 144-190 33-77 (87)
89 1k9u_A Polcalcin PHL P 7; poll 23.2 50 0.0017 23.6 2.6 26 387-412 39-66 (78)
90 2kn9_A Rubredoxin; metalloprot 22.1 62 0.0021 25.6 3.0 44 145-190 26-69 (81)
91 2kwq_A Protein MCM10 homolog; 21.5 81 0.0028 25.5 3.7 42 53-99 14-57 (92)
92 3nrw_A Phage integrase/site-sp 21.0 1E+02 0.0035 24.2 4.3 51 365-415 16-68 (117)
93 1dx8_A Rubredoxin; electron tr 20.7 97 0.0033 23.7 3.8 45 145-191 6-50 (70)
94 2dha_A FLJ20171 protein; RRM d 20.3 33 0.0011 28.5 1.2 15 399-413 33-47 (123)
95 2oxo_A Integrase; DNA-binding 20.2 1.2E+02 0.0039 22.0 4.2 16 400-415 45-60 (103)
96 2kj9_A Integrase; DNA_BRE_C su 20.2 82 0.0028 24.8 3.5 31 385-415 36-69 (118)
No 1
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.54 E-value=1.2e-15 Score=119.67 Aligned_cols=62 Identities=24% Similarity=0.508 Sum_probs=45.7
Q ss_pred CCCccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 113 VENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 113 ~~n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
.+++.|.|++++.++||+|+++|+ .++||||+.|++|||..|||++.. .. .+.|+|+.|...
T Consensus 6 ~~~~~~~~~~~~~~~~CiC~~~~~------~~~MIqCd~C~~WfH~~Cvgi~~~------~~----~~~~~C~~C~~s 67 (68)
T 3o70_A 6 HHSSGRENLYFQGLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS------NV----PEVFVCQKCRDS 67 (68)
T ss_dssp --------CTTTTCCCSTTCCCCT------TCCEEECTTTCCEEETTTTTCCTT------SC----CSSCCCHHHHTC
T ss_pred cCCcccccCCCCCceEeECCCcCC------CCCEEECCCCCccccccccCcCcc------cC----CCcEECCCCCCC
Confidence 467899999999999999999973 478999999999999999999642 11 358999999753
No 2
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.50 E-value=3.2e-15 Score=120.12 Aligned_cols=69 Identities=32% Similarity=0.771 Sum_probs=55.0
Q ss_pred cCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC--ccc
Q 014692 117 ENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC--SFL 194 (420)
Q Consensus 117 ~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~--~fL 194 (420)
.-.|++|...+||+|++||+ + .++||||+.|++|||..||+++.. .... ++.|+|+.|..+. +++
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d-~----~~~MIqCd~C~~WfH~~Cvgl~~~----~~~~----~~~~~C~~C~~~~~~~~~ 69 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYN-V----NHFMIECGLCQDWFHGSCVGIEEE----NAVD----IDIYHCPDCEAVFGPSIM 69 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCC-S----SSCEEEBTTTCCEEEHHHHTCCHH----HHTT----CSBBCCTTTTTTSCSCBC
T ss_pred CCccCccCCccEEEcCCccC-C----CCceEEcCCCCCcEEeeecCcccc----cccC----CCeEECCCcccccCCCce
Confidence 45789999999999999983 3 479999999999999999999642 1122 5789999999765 556
Q ss_pred cccc
Q 014692 195 STYP 198 (420)
Q Consensus 195 ~~y~ 198 (420)
+++.
T Consensus 70 K~~~ 73 (79)
T 1wep_A 70 KNWH 73 (79)
T ss_dssp CCCC
T ss_pred eeec
Confidence 6554
No 3
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.38 E-value=9.4e-14 Score=106.95 Aligned_cols=56 Identities=27% Similarity=0.707 Sum_probs=45.3
Q ss_pred CCCcceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 123 NFKGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 123 Nf~g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
+..+.|| +|++||+ + .++||||+.|++|||..|||++.. ..+. ...|+|+.|..+.
T Consensus 3 ~~e~~~C~~C~~~~~-~----~~~mI~Cd~C~~WfH~~Cvgl~~~----~~~~----~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYA-A----DEFWICCDLCEMWFHGKCVKITPA----RAEH----IKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCC-S----SSCEEECSSSCCEEETTTTTCCTT----GGGG----CSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccC-C----CCCEEEccCCCCCCCccccCcChh----HhcC----CCcEECCCCcCcC
Confidence 5678999 9999994 3 479999999999999999999642 1122 5789999998764
No 4
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.33 E-value=5.5e-14 Score=111.91 Aligned_cols=58 Identities=33% Similarity=0.789 Sum_probs=46.4
Q ss_pred CCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 121 NHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 121 n~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
+.|..++||+|++|| |+ .++||||+.|++|||..|||++.. .... .+.|+|+.|..+.
T Consensus 5 ~~~~~~~yCiC~~~~-~~----~~~MI~Cd~C~~WfH~~Cvg~~~~----~~~~----~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 5 SMATVPVYCVCRLPY-DV----TRFMIECDACKDWFHGSCVGVEEE----EAPD----IDIYHCPNCEKTH 62 (75)
T ss_dssp TTCCCCEETTTTEEC-CT----TSCEEECTTTCCEEEHHHHTCCTT----TGGG----BSSCCCHHHHHHH
T ss_pred CCCCCeeEEECCCcC-CC----CCCEEEcCCCCCCEeccccccccc----ccCC----CCEEECCCCcccC
Confidence 457789999999998 33 479999999999999999999642 1122 5789999998653
No 5
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.31 E-value=9.3e-14 Score=110.63 Aligned_cols=66 Identities=32% Similarity=0.731 Sum_probs=48.9
Q ss_pred CCccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 114 ENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 114 ~n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
.|..|.|++| ++||+|+++|+ .++||||+.|++|||..|||++.. + ...-.+....|+|+.|..+.
T Consensus 6 ~~e~~~~d~~--~~~C~C~~~~~------~~~MI~Cd~C~~WfH~~Cvgl~~~---~-~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 6 SGECEVYDPN--ALYCICRQPHN------NRFMICCDRCEEWFHGDCVGISEA---R-GRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCCCSCCTT--CCCSTTCCCCC------SSCEEECSSSCCEEEHHHHSCCHH---H-HHHHHHHTCCCCCHHHHHHS
T ss_pred cCCccccCCC--CCEEECCCccC------CCCEEEeCCCCCcEeCeEEccchh---h-hhhccCCCCeEECcCCcCcc
Confidence 4567889888 79999999984 368999999999999999999532 1 00000003689999997543
No 6
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.26 E-value=7.6e-13 Score=98.20 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=41.2
Q ss_pred CCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014692 124 FKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 189 (420)
Q Consensus 124 f~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~ 189 (420)
|..+||+|++|++ .++||||+.|++|||..|+|++.. + . .+.|+|+.|..
T Consensus 2 ~d~~~C~C~~~~~------~~~MI~Cd~C~~W~H~~Cvgi~~~---~---~----~~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS---N---V----PEVFVCQKCRD 51 (52)
T ss_dssp TTCBCSTTCCBCT------TCCEEECTTTCCEEETTTTTCCGG---G---C----CSSCCCHHHHT
T ss_pred CcCeEEEeCCcCC------CCCEEEcCCCCccccccccCCCcc---c---C----CCcEECcCCCC
Confidence 6789999999873 479999999999999999999642 1 1 35799999964
No 7
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.14 E-value=1.2e-11 Score=97.60 Aligned_cols=55 Identities=27% Similarity=0.587 Sum_probs=42.9
Q ss_pred CCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 123 NFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 123 Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
+-..+||+|+++|+| ...||||+.|++|||..|||++... .. ...|+|+.|..+.
T Consensus 13 ~~~~~~C~C~~~~~~-----g~~mI~Cd~C~~W~H~~Cvg~~~~~-----~~----~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDCKCGTKDDD-----GERMLACDGCGVWHHTRCIGINNAD-----AL----PSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECCTTCCCSCC-----SSCEEECSSSCEEEETTTTTCCTTS-----CC----CSCCCCHHHHHHC
T ss_pred CCcceEeeCCCccCC-----CCcEEECCCCCCccCCeeeccCccc-----cC----CCcEECCCccCCC
Confidence 446789999999742 3589999999999999999996421 12 4689999997543
No 8
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.10 E-value=1.6e-11 Score=113.37 Aligned_cols=68 Identities=22% Similarity=0.509 Sum_probs=48.8
Q ss_pred CcceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCC--CCCccCeeeccCccCCCccccccc
Q 014692 125 KGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDE--GEPVYEDFICKACSAVCSFLSTYP 198 (420)
Q Consensus 125 ~g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~--~~~~~~~fiC~~C~~~~~fL~~y~ 198 (420)
.|.|| +|+++|+ +++. ...||||+.|++|||..|+|++.. ..+. ..|....|+|+.|..+.+.+++|+
T Consensus 1 ~G~~CpiC~k~Y~-~~~~-~~~MIqCd~C~~W~H~~Cvgi~~~----~~e~~~~~pe~~~y~Cp~C~~~~~~~~~~~ 71 (183)
T 3lqh_A 1 SGNFCPLCDKCYD-DDDY-ESKMMQCGKCDRWVHSKCENLSDE----MYEILSNLPESVAYTCVNCTERHPAEWRLA 71 (183)
T ss_dssp -CCBCTTTCCBCT-TCCT-TCCEEECTTTCCEEEGGGSSCCHH----HHHHHHHSHHHHCCCCTTTCCSSSCHHHHH
T ss_pred CcCcCCCCcCccC-Cccc-CCCeEECCCCCcccchhccccCHH----HHHHhhcCCCCCeeECcCCCCCCCHHHHHH
Confidence 47899 6999996 3321 367999999999999999999531 0000 000124899999999999888775
No 9
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.06 E-value=1.4e-11 Score=91.33 Aligned_cols=47 Identities=38% Similarity=0.960 Sum_probs=36.5
Q ss_pred eEEeCCCCCCCCcccccceeecc-ccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCcc
Q 014692 128 YCTCNRPYPDPDVEEQVEMIQCC-ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 188 (420)
Q Consensus 128 yC~C~rpypdp~~e~~~~MiQC~-~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~ 188 (420)
.|+|++||+ + .+.||||+ .|++|||..|+|++.. + .. ...|+|+.|.
T Consensus 5 cc~C~~p~~-~----~~~mI~Cd~~C~~WfH~~Cvgl~~~---~--~~----~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCK-D----KVDWVQCDGGCDEWFHQVCVGVSPE---M--AE----NEDYICINCA 52 (52)
T ss_dssp CTTCCCCCC-T----TCCEEECTTTTCCEEETTTTTCCHH---H--HH----HSCCCCSCC-
T ss_pred CCCCcCccC-C----CCcEEEeCCCCCccCcccccCCCcc---c--cC----CCCEECCCCC
Confidence 478999994 2 47899999 9999999999999632 1 11 3679999984
No 10
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.05 E-value=1.1e-11 Score=129.77 Aligned_cols=64 Identities=33% Similarity=0.750 Sum_probs=48.6
Q ss_pred CccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 115 NAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 115 n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
+..+.|+++..++||+|++|| |+ .++||||+.|++|||..|||++.. ..+. .+.|+|+.|..+.
T Consensus 26 ~~~~s~~~~~~~~yC~C~~~~-d~----~~~MIqCd~C~~WfH~~Cvgl~~~----~~~~----~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 26 PGRASAPPPPPPVYCVCRQPY-DV----NRFMIECDICKDWFHGSCVGVEEH----HAVD----IDLYHCPNCAVLH 89 (488)
T ss_dssp ------CCCCCCEETTTTEEC-CT----TSCEEEBTTTCCEEEHHHHTCCGG----GGGG----EEEBCCHHHHHHH
T ss_pred CCCCCCcCCCCCeEEeCCCcC-CC----CCCeEEccCCCCceeeeecCcCcc----cccC----CCEEECCCCcCCc
Confidence 345689999999999999998 44 489999999999999999999642 2223 6799999998554
No 11
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.00 E-value=5.6e-11 Score=95.18 Aligned_cols=56 Identities=32% Similarity=0.648 Sum_probs=42.3
Q ss_pred CcceEEeCCCCCCCCcccccceeecc--ccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCC--ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~--~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
..+||+|+++.+ .++||||+ .|..|||..|||++.. +.. ........|+|+.|..+
T Consensus 15 ~~~~CiC~~~~~------~g~MI~CD~~~C~~W~H~~CVgi~~~---~~~-~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRCVCGNSLE------TDSMIQCEDPRCHVWQHVGCVILPDK---PMD-GNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCSSCCCCC------CSCEEECSSTTTCCEEEHHHHSCCCT---TTC-SCSCSCSSCCCHHHHHC
T ss_pred CCEEeECCCcCC------CCCEEEECCccCCccccCEEEccccc---ccc-ccccCCCCEECCCCCcc
Confidence 688999999842 47999999 9999999999999653 110 00012578999999754
No 12
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.96 E-value=1.9e-10 Score=89.75 Aligned_cols=54 Identities=28% Similarity=0.591 Sum_probs=39.7
Q ss_pred CcceEEeCCCCCCCCcccccceeecc--ccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCC--ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 189 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~--~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~ 189 (420)
..+||+|+.++. .++||||+ .|..|||..|||++.. |.... ...+.|+|+.|..
T Consensus 9 ~~v~C~C~~~~~------~g~mI~CD~~~C~~W~H~~Cvgi~~~---~~~~~--~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRCICSSTMV------NDSMIQCEDQRCQVWQHLNCVLIPDK---PGESA--EVPPVFYCELCRL 64 (68)
T ss_dssp CEECCTTCCCSC------CSCEEECSCTTTCEEEETTTSCCCSS---TTSCC--CCCSSCCCHHHHH
T ss_pred CCEEeECCCCcC------CCCEEEECCCCCCCeEchhhCCCCcc---ccccc--CCCCcEECcCccC
Confidence 358999998752 47999999 4999999999999643 11111 1146899999963
No 13
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.91 E-value=1.6e-10 Score=88.02 Aligned_cols=48 Identities=31% Similarity=0.789 Sum_probs=39.0
Q ss_pred CcceEEeCCCCCCCCcccccceeeccc--cC-ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~--CE-DWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
..+||+|++++ .++||+|+. |. +|||..|||++. .|. ..|+|+.|..+
T Consensus 8 e~~yC~C~~~~-------~g~mi~CD~~~C~~~wfH~~Cvgl~~---~p~--------~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYCLCHQVS-------YGEMIGCDNPDCPIEWFHFACVDLTT---KPK--------GKWFCPRCVQE 58 (59)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS---CCS--------SCCCCHHHHCC
T ss_pred CCcEEECCCCC-------CCCeeEeeCCCCCCCCEecccCCccc---CCC--------CCEECcCccCc
Confidence 57899999986 368999999 77 899999999964 231 36999999764
No 14
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.89 E-value=2e-10 Score=88.29 Aligned_cols=49 Identities=31% Similarity=0.637 Sum_probs=39.2
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccC---ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCICE---DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~CE---DWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
..+||+|++++ .++||+|+.|+ +|||..|||++. .| ...|+|+.|..+.
T Consensus 10 e~~yC~C~~~~-------~g~MI~CD~c~C~~~WfH~~Cvgl~~---~p--------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 10 EPTYCLCNQVS-------YGEMIGCDNEQCPIEWFHFSCVSLTY---KP--------KGKWYCPKCRGDN 61 (62)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS---CC--------SSCCCCHHHHTCC
T ss_pred CCcEEECCCCC-------CCCeeeeeCCCCCcccEecccCCcCc---CC--------CCCEECcCcccCC
Confidence 57899999985 36899999954 999999999964 22 2579999997653
No 15
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.89 E-value=6.6e-10 Score=87.63 Aligned_cols=49 Identities=35% Similarity=0.813 Sum_probs=39.9
Q ss_pred CcceEEeCCCCCCCCcccccceeeccc--cC-ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~--CE-DWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
..+||+|++++ .++||+|+. |. +|||..||||+. .| -..|+|+.|..+.
T Consensus 15 ~~~~C~C~~~~-------~g~MI~CD~~~C~~~wfH~~Cvgl~~---~p--------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT---KP--------RGKWFCPRCSQES 66 (71)
T ss_dssp SCCCSTTCCCS-------CSSEECCSCSSCSCCCEETTTTTCSS---CC--------SSCCCCTTTSSCS
T ss_pred CCCEEECCCCC-------CCCEeEeeCCCCCCccEecccCCcCc---CC--------CCCEECCCCCccc
Confidence 57899999986 268999999 77 899999999964 23 2469999998654
No 16
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.86 E-value=6.1e-11 Score=122.85 Aligned_cols=54 Identities=35% Similarity=0.910 Sum_probs=44.0
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
..+||+|++|| |+ .++||||+.|++|||..|||++.. .... .+.|+|+.|..+.
T Consensus 4 ~~~yCiC~~~~-d~----~~~MIqCD~C~~WfH~~CVgi~~~----~~~~----~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 4 VPVYCLCRLPY-DV----TRFMIECDMCQDWFHGSCVGVEEE----KAAD----IDLYHCPNCEVLH 57 (447)
T ss_dssp CCEETTTTEEC-CT----TSCEEECTTTCCEEEHHHHTCCHH----HHTT----EEECCCHHHHHHH
T ss_pred CCeEEeCCCcC-CC----CCCeEEcCCCCcccccccCCcCcc----cccC----CCEEECCCCcccc
Confidence 57899999998 44 489999999999999999999632 1223 6799999998655
No 17
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.85 E-value=7.3e-10 Score=91.43 Aligned_cols=49 Identities=35% Similarity=0.813 Sum_probs=40.1
Q ss_pred CcceEEeCCCCCCCCcccccceeeccc--cC-ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~--CE-DWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
..+||+|++++ .++||+|+. |. +|||..||+|+. .| ...|+|+.|..+.
T Consensus 35 e~~yCiC~~~~-------~g~MI~CD~~dC~~~WfH~~CVgl~~---~p--------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT---KP--------RGKWFCPRCSQES 86 (91)
T ss_dssp CCBCSTTCCBC-------CSCCCCCSCSSCSCCCCCSTTTTCSS---CC--------CSSCCCTTTCCCC
T ss_pred CCcEEECCCCC-------CCCEeEecCCCCCCCCEecccCCcCc---CC--------CCCEECcCccCcC
Confidence 67999999986 268999999 76 999999999964 23 2469999998654
No 18
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.82 E-value=1.4e-10 Score=105.29 Aligned_cols=54 Identities=24% Similarity=0.757 Sum_probs=42.9
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
.+.||+|++||. + .+.||||+.|++|||..|+|++.. ..+. .+.|+|+.|..+.
T Consensus 7 ~~~~C~C~~~~~-~----~~~mi~Cd~C~~WfH~~Cv~~~~~----~~~~----~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYCICKTPED-E----SKFYIGCDRCQNWYHGRCVGILQS----EAEL----IDEYVCPQCQSTE 60 (174)
T ss_dssp CCEETTTTEECC-T----TSCEEECTTTCCEEEHHHHTCCHH----HHTT----CSSCCCHHHHHHH
T ss_pred CCcEeeCCCCCC-C----CCCEeECCCCCchhChhhcCCchh----hccC----ccCeecCCCcchh
Confidence 578999999983 3 478999999999999999998532 1122 5689999998653
No 19
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.81 E-value=5.3e-10 Score=85.30 Aligned_cols=48 Identities=35% Similarity=0.829 Sum_probs=38.4
Q ss_pred CcceEEeCCCCCCCCcccccceeeccc--cC-ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~--CE-DWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
..+||+|++++ .++||+|+. |. +|||..|||++. .| -..|+|+.|..+
T Consensus 9 e~~~C~C~~~~-------~g~mi~CD~cdC~~~wfH~~Cvgl~~---~p--------~g~w~C~~C~~~ 59 (60)
T 2vnf_A 9 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT---KP--------RGKWFCPRCSQE 59 (60)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS---CC--------SSCCCCHHHHC-
T ss_pred CCCEEECCCcC-------CCCEEEeCCCCCCCceEehhcCCCCc---CC--------CCCEECcCccCc
Confidence 57899999985 368999999 66 999999999864 23 246999999764
No 20
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=6.1e-10 Score=87.61 Aligned_cols=49 Identities=33% Similarity=0.765 Sum_probs=39.7
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccC---ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCICE---DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~CE---DWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
..+||+|++++ .++||||+.|+ +|||..||+++.. | ...|+|+.|..+.
T Consensus 5 ~~~yC~C~~~~-------~g~MI~CD~cdC~~~WfH~~Cvgl~~~---p--------~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYCICNQVS-------YGEMVGCDNQDCPIEWFHYGCVGLTEA---P--------KGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCSTTSCCC-------CSSEECCSCTTCSCCCEEHHHHTCSSC---C--------SSCCCCHHHHHHH
T ss_pred CCeEEEcCCCC-------CCCEeEeCCCCCCccCCcccccccCcC---C--------CCCEECCCCCccc
Confidence 57899999985 36999999974 9999999999642 2 3579999997553
No 21
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.76 E-value=9.8e-10 Score=86.91 Aligned_cols=53 Identities=30% Similarity=0.714 Sum_probs=41.2
Q ss_pred CCcceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 124 FKGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 124 f~g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
-.+.|| +|++++. .+.||+|+.|+.|||..||+++.. +. . ...|+|+.|..+.
T Consensus 16 ~~~~~C~~C~~~~~------~~~mi~CD~C~~wfH~~Cv~~~~~---~~--~----~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD------GSPMIGCDDCDDWYHWPCVGIMAA---PP--E----EMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS------SCCEEECSSSSSEEEHHHHTCSSC---CC--S----SSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC------CCCEEEcCCCCcccccccCCCCcc---CC--C----CCCEEChhccCch
Confidence 357799 9999972 368999999999999999999642 11 1 2579999997653
No 22
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.73 E-value=1.8e-10 Score=89.39 Aligned_cols=52 Identities=19% Similarity=0.490 Sum_probs=38.1
Q ss_pred ceEEeCCCCCCCCcccccceeecc-ccCceecccCCCCCCCCCCCC--CCCCCCccCeeeccCcc
Q 014692 127 VYCTCNRPYPDPDVEEQVEMIQCC-ICEDWFHEEHIGLEPSDEIPR--DDEGEPVYEDFICKACS 188 (420)
Q Consensus 127 ~yC~C~rpypdp~~e~~~~MiQC~-~CEDWfH~~Clg~~~~~~~p~--~~~~~~~~~~fiC~~C~ 188 (420)
..++|++||+ + ..+||||+ .|++|||..||||+... ... .+. ...|+|+.|.
T Consensus 10 ~C~~C~~p~~-~----~~~mI~CD~~C~~WfH~~Cvglt~~~-~~~l~~e~----~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVN-D----DQDAILCEASCQKWFHRICTGMTETA-YGLLTAEA----SAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCC-T----TSCEEEBTTTTCCEEEHHHHTCCHHH-HHHHHHCT----TEEECCHHHH
T ss_pred cCccCCCccC-C----CCCeEecccCccccCchhccCCCHHH-HHHhhccC----CCcEECcCcc
Confidence 4568999995 4 47999999 99999999999996420 000 011 3489999986
No 23
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.72 E-value=5.2e-10 Score=94.51 Aligned_cols=53 Identities=23% Similarity=0.560 Sum_probs=38.7
Q ss_pred EEeCCCCCCCCcccccceeecc-ccCceecccCCCCCCCC--CCCCCCCCCCccCeeeccCccCCC
Q 014692 129 CTCNRPYPDPDVEEQVEMIQCC-ICEDWFHEEHIGLEPSD--EIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 129 C~C~rpypdp~~e~~~~MiQC~-~CEDWfH~~Clg~~~~~--~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
.+|++||+ + .+.||||+ .|++|||..||||+... .+. .+. ...|+|+.|..+.
T Consensus 7 ~iC~~p~~-~----~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~-~~~----~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 7 GACRSEVN-D----DQDAILCEASCQKWFHRECTGMTESAYGLLT-TEA----SAVWACDLCLKTK 62 (105)
T ss_dssp TTTCSBCC-T----TSCEEECTTTTCCEEEGGGTTCCHHHHHHHH-HCT----TEEECCHHHHHTT
T ss_pred CCCCCccC-C----CCCEEEecCCcccccccccCCcCHHHHHhhc-cCC----CCCEECccccCcC
Confidence 37999995 3 36899998 99999999999996420 000 011 2689999998664
No 24
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.69 E-value=3.8e-09 Score=87.00 Aligned_cols=46 Identities=30% Similarity=0.748 Sum_probs=37.7
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccC---ceecccCCCCCCCCCCCCCCCCCCccCeeeccC-cc
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCICE---DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKA-CS 188 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~CE---DWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~-C~ 188 (420)
..+||+|++++ .++||+|+.|+ +|||..||||+. .| -..|+|+. |.
T Consensus 25 ~~~yCiC~~~~-------~g~MI~CD~c~C~~eWfH~~CVgl~~---~p--------~~~W~Cp~cC~ 74 (90)
T 2jmi_A 25 EEVYCFCRNVS-------YGPMVACDNPACPFEWFHYGCVGLKQ---AP--------KGKWYCSKDCK 74 (90)
T ss_dssp CSCCSTTTCCC-------SSSEECCCSSSCSCSCEETTTSSCSS---CT--------TSCCCSSHHHH
T ss_pred CCcEEEeCCCC-------CCCEEEecCCCCccccCcCccCCCCc---CC--------CCCccCChhhc
Confidence 57899999985 25799999977 999999999963 23 24799999 86
No 25
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.68 E-value=9.5e-09 Score=85.68 Aligned_cols=51 Identities=24% Similarity=0.591 Sum_probs=40.4
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 125 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 125 ~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
..+.|+|+.++. .+.||||+.|..|||..|++++.. .+ .+.|+|+.|..+.
T Consensus 27 d~vrCiC~~~~~------~~~mi~Cd~C~~w~H~~C~~~~~~-~~---------p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 27 DVTRCICGFTHD------DGYMICCDKCSVWQHIDCMGIDRQ-HI---------PDTYLCERCQPRN 77 (98)
T ss_dssp CBCCCTTSCCSC------SSCEEEBTTTCBEEETTTTTCCTT-SC---------CSSBCCTTTSSSC
T ss_pred CCEEeECCCccC------CCcEEEcCCCCCcCcCcCCCCCcc-CC---------CCCEECCCCcCCC
Confidence 357899999863 479999999999999999998532 12 2469999997654
No 26
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=98.40 E-value=2e-07 Score=85.32 Aligned_cols=66 Identities=18% Similarity=0.396 Sum_probs=43.3
Q ss_pred CCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC-ccccccc
Q 014692 123 NFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC-SFLSTYP 198 (420)
Q Consensus 123 Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~-~fL~~y~ 198 (420)
|-+..||+|+.|.+ +...|+||..|..|||+.|+......-+|- +- +..|+|..|.... .++.|-+
T Consensus 2 n~~~~yCYCG~~~~-----~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~-~~----fY~F~C~~C~~~g~E~f~R~~ 68 (177)
T 3rsn_A 2 DTQAGSVDEENGRQ-----LGEVELQCGICTKWFTADTFGIDTSSCLPF-MT----NYSFHCNVCHHSGNTYFLRKQ 68 (177)
T ss_dssp ---------CTTCC-----TTSCEEECTTTCCEEEGGGGTCCCTTCCTT-CC----SEEEECTTTSTTSSCEEEECC
T ss_pred CCeeeEEEcCCCCC-----CCceeEeeccccceecHHHhcccccCcccc-ce----eEEEEccccCCCCcceeEecc
Confidence 44567999999863 357899999999999999998654322331 23 8999999999865 7777654
No 27
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.30 E-value=1.8e-07 Score=98.11 Aligned_cols=40 Identities=33% Similarity=0.686 Sum_probs=33.2
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 143 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
..+||||+.|++|||+.|||++.. .++. .+.|+|+.|...
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~----~a~~----~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQF----EYYL----YEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGG----GTTT----EEECCCTTTHHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChh----HhcC----CCeEECcCCcCC
Confidence 479999999999999999999642 2334 789999999854
No 28
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.96 E-value=9.3e-07 Score=75.39 Aligned_cols=39 Identities=26% Similarity=0.734 Sum_probs=29.6
Q ss_pred ceeeccccCceecccCCCCCCC-----CCCCCCCCCCCccCeeeccCccCC
Q 014692 145 EMIQCCICEDWFHEEHIGLEPS-----DEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 145 ~MiQC~~CEDWfH~~Clg~~~~-----~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
-||||+.|+||||..|++++.. ..+|. ...++|+.|..+
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~-------~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPE-------SVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCT-------TTTCCSSCCTTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccc-------cceeeCcccccc
Confidence 3999999999999999999631 12231 346899999765
No 29
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.58 E-value=1.8e-05 Score=67.05 Aligned_cols=45 Identities=18% Similarity=0.541 Sum_probs=32.2
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCCc
Q 014692 143 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCS 192 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~~ 192 (420)
...||||.+|++|||..|+++... .++..+. .+.|.|+.|....|
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~-~~~~~~~----~~~~~C~~C~~~~~ 116 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGE-GLLNEEL----PNCWECPKCYQEDS 116 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCC-CEECSSS----SSEEECTTTC----
T ss_pred CcceEEeeecCCeEECCCCCCCcc-ccccccC----CCCeECCCCcCCCC
Confidence 467999999999999999998643 2333333 67899999987654
No 30
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.43 E-value=4.7e-05 Score=55.44 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=33.3
Q ss_pred EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 130 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 130 ~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
+|+++.. .+.||.|+.|..|||..|++.+.. .+| -..|+|+.|...
T Consensus 5 vC~~~~~------~~~ll~Cd~C~~~~H~~Cl~p~l~-~~P--------~g~W~C~~C~~~ 50 (51)
T 1f62_A 5 VCRKKGE------DDKLILCDECNKAFHLFCLRPALY-EVP--------DGEWQCPACQPA 50 (51)
T ss_dssp TTCCSSC------CSCCEECTTTCCEECHHHHCTTCC-SCC--------SSCCSCTTTSCC
T ss_pred CCCCCCC------CCCEEECCCCChhhCcccCCCCcC-CCC--------CCcEECcCcccc
Confidence 5666641 468999999999999999964221 233 247999999753
No 31
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.0001 Score=60.57 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=36.9
Q ss_pred ceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 127 VYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 127 ~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
.+| +|+++.. ...||.|+.|..|||..||+.+-. .+| ...|+|+.|+.+
T Consensus 17 ~~C~vC~~~~~------~~~ll~CD~C~~~~H~~Cl~Ppl~-~~P--------~g~W~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGDE------DDKLLFCDGCDDNYHIFCLLPPLP-EIP--------RGIWRCPKCILA 66 (92)
T ss_dssp CCCSSSCCSGG------GGGCEECTTTCCEECSSSSSSCCS-SCC--------SSCCCCHHHHHH
T ss_pred CCCccCCCcCC------CCCEEEcCCCCchhccccCCCCcc-cCC--------CCCcCCccCcCc
Confidence 467 8998752 478999999999999999984321 244 247999999754
No 32
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=97.02 E-value=0.0002 Score=53.93 Aligned_cols=38 Identities=21% Similarity=0.531 Sum_probs=28.9
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 144 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 144 ~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
+.||.|+.|..|||..|++.+-. .+| -..|+|+.|..+
T Consensus 15 g~ll~Cd~C~~~fH~~Cl~ppl~-~~p--------~g~W~C~~C~~~ 52 (60)
T 2puy_A 15 GQLLMCDTCSRVYHLDCLDPPLK-TIP--------KGMWICPRCQDQ 52 (60)
T ss_dssp SSCEECSSSSCEECGGGSSSCCS-SCC--------CSCCCCHHHHHH
T ss_pred CcEEEcCCCCcCEECCcCCCCcC-CCC--------CCceEChhccCh
Confidence 57999999999999999984321 233 247999999643
No 33
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=96.96 E-value=0.00048 Score=54.68 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=42.3
Q ss_pred ccceEeecCCCCCCCceEeccchhh-hcCCCceeEeecccceeeccCCCCCCc
Q 014692 51 RQAIFSCLSCAPEGNAGVCTACSLT-CHDGHEIVELWTKRNFRCDCGNSKFGE 102 (420)
Q Consensus 51 rQ~~y~C~tC~~~~~~giC~~Cs~~-CH~~H~l~el~~kr~f~CDCG~~~~~~ 102 (420)
-..+|.|+||..+..-.||..|-.. =|.||++.-.....+..||||....+.
T Consensus 14 ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk 66 (75)
T 3ny3_A 14 GEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWK 66 (75)
T ss_dssp TCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBS
T ss_pred CCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcC
Confidence 3568999999988777999999877 699999864444457899999987763
No 34
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=96.71 E-value=0.0011 Score=51.59 Aligned_cols=40 Identities=20% Similarity=0.448 Sum_probs=30.4
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 143 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
.+.||.|+.|..|||..||+.+-. .+|. -..|+|+.|..+
T Consensus 30 ~~~ll~CD~C~~~yH~~Cl~Ppl~-~~P~-------g~~W~C~~C~~~ 69 (70)
T 3asl_A 30 PDKQLMCDECDMAFHIYCLDPPLS-SVPS-------EDEWYCPECRND 69 (70)
T ss_dssp GGGEEECTTTCCEEEGGGSSSCCS-SCCS-------SSCCCCTTTSCC
T ss_pred CCCEEEcCCCCCceecccCCCCcC-CCCC-------CCCcCCcCccCc
Confidence 579999999999999999984221 2442 237999999753
No 35
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.66 E-value=0.00076 Score=51.11 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=35.3
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 126 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 126 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
..|| +|++. +.||.|+.|..|||..|++.+.. .+| -..|+|+.|...
T Consensus 11 ~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~p~l~-~~p--------~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG---------GEIILCDTCPRAYHMVCLDPDME-KAP--------EGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC---------SSEEECSSSSCEEEHHHHCTTCC-SCC--------CSSCCCTTGGGG
T ss_pred CCCCccCCCC---------CcEEECCCCChhhhhhccCCCCC-CCC--------CCceECcccccc
Confidence 4577 48863 57999999999999999987432 233 247999999753
No 36
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=96.64 E-value=0.00056 Score=55.66 Aligned_cols=55 Identities=22% Similarity=0.478 Sum_probs=39.0
Q ss_pred cceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC--cccc
Q 014692 126 GVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC--SFLS 195 (420)
Q Consensus 126 g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~--~fL~ 195 (420)
...++|++... .+ .+.||.|+.|..|||..|++++. +|. ..|+|+.|.... .+|.
T Consensus 26 ~~C~vC~~~~s-~~---~~~ll~CD~C~~~fH~~Cl~p~~---vP~--------g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 26 AVCSICMDGES-QN---SNVILFCDMCNLAVHQECYGVPY---IPE--------GQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCSSCCSSSS-CS---EEEEEECSSSCCCCCHHHHTCSS---CCS--------SCCCCHHHHHHTTSCC--
T ss_pred CcCCcCCCCCC-CC---CCCEEECCCCCchhhcccCCCCc---cCC--------CceECccccCccchhhhh
Confidence 34559998742 11 47899999999999999999852 442 479999998543 4544
No 37
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.40 E-value=0.0013 Score=48.80 Aligned_cols=46 Identities=22% Similarity=0.651 Sum_probs=33.6
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014692 126 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 189 (420)
Q Consensus 126 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~ 189 (420)
..+| +|++. +.||.|+.|..|||..|++.+.. .+| ...|+|+.|+.
T Consensus 9 ~~~C~vC~~~---------g~ll~Cd~C~~~~H~~Cl~ppl~-~~p--------~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLK-TIP--------KGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---------SCCEECSSSSCEECSSSSSSCCC-SCC--------CSSCCCHHHHC
T ss_pred CCCCccCCCC---------CeEEEcCCCCcceECccCCCCcC-CCC--------CCceEChhhhC
Confidence 4456 57753 57999999999999999984321 233 24799999964
No 38
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.34 E-value=0.00082 Score=52.64 Aligned_cols=48 Identities=21% Similarity=0.520 Sum_probs=36.2
Q ss_pred eEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 128 YCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 128 yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
-.+|+++.. .+ .+.||.|+.|..|||..|++++. +|. ..|+|+.|..+
T Consensus 19 C~vC~~~~s-~~---~~~ll~CD~C~~~~H~~Cl~~~~---vP~--------g~W~C~~C~~~ 66 (71)
T 2ku3_A 19 CSICMDGES-QN---SNVILFCDMCNLAVHQECYGVPY---IPE--------GQWLCRHCLQS 66 (71)
T ss_dssp CSSSCCCCC-CS---SSCEEECSSSCCEEEHHHHTCSS---CCS--------SCCCCHHHHHH
T ss_pred CCCCCCCCC-CC---CCCEEECCCCCCccccccCCCCc---CCC--------CCcCCccCcCc
Confidence 448888742 11 47899999999999999999852 442 47999999743
No 39
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.27 E-value=0.0037 Score=49.67 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=33.6
Q ss_pred EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014692 130 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 189 (420)
Q Consensus 130 ~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~ 189 (420)
+|++..+ .+.||.|+.|..|||..||+.+-. .+|. -..|+|+.|..
T Consensus 31 vC~~~~~------~~~ll~CD~C~~~yH~~Cl~Ppl~-~~P~-------g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHE------PNMQLLCDECNVAYHIYCLNPPLD-KVPE-------EEYWYCPSCKT 76 (77)
T ss_dssp SSCCCCC------STTEEECSSSCCEEETTSSSSCCS-SCCC-------SSCCCCTTTCC
T ss_pred CcCCcCC------CCCEEEcCCCCccccccccCCCcc-CCCC-------CCCcCCcCccC
Confidence 5777631 478999999999999999984321 2442 23799999974
No 40
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=96.26 E-value=0.0014 Score=49.96 Aligned_cols=54 Identities=22% Similarity=0.504 Sum_probs=36.9
Q ss_pred ceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCC-CCCCCCCCCccCeeeccCccCCC
Q 014692 127 VYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDE-IPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 127 ~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~-~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
.+| +|++.+. .+ .+.||.|+.|..|||..|++.+-... ++ . -..|+|+.|+.+.
T Consensus 7 ~~C~vC~~~~~-~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~---p----~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 7 GVCTICQEEYS-EA---PNEMVICDKCGQGYHQLCHTPHIDSSVID---S----DEKWLCRQCVFAT 62 (66)
T ss_dssp CCBSSSCCCCC-BT---TBCEEECSSSCCEEETTTSSSCCCHHHHH---S----SCCCCCHHHHHTT
T ss_pred CCCCCCCCCCC-CC---CCCEEECCCCChHHHhhhCCCcccccccC---C----CCCEECCCCcCcc
Confidence 345 7888752 11 47999999999999999998732100 10 1 2479999997543
No 41
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.25 E-value=0.0015 Score=50.19 Aligned_cols=47 Identities=28% Similarity=0.519 Sum_probs=34.3
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 126 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 126 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
..+| +|+.. +.||.|+.|..|||..|++.+.. .+| -..|+|+.|..+
T Consensus 8 ~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~ppl~-~~P--------~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRDG---------GELICCDGCPRAFHLACLSPPLR-EIP--------SGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSCC---------SSCEECSSCCCEECTTTSSSCCS-SCC--------SSCCCCHHHHHT
T ss_pred CCCCccCCCC---------CCEEEcCCCChhhcccccCCCcC-cCC--------CCCeECccccCc
Confidence 3456 57743 57999999999999999984321 233 247999999754
No 42
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=96.08 E-value=0.0044 Score=46.84 Aligned_cols=39 Identities=23% Similarity=0.599 Sum_probs=30.1
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 144 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 144 ~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
+.||.|+.|..|||..|++.+-. .+| -..|+|+.|+.+.
T Consensus 19 g~ll~Cd~C~~~fH~~Cl~ppl~-~~p--------~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 19 GELLCCDTCPSSYHIHCLNPPLP-EIP--------NGEWLCPRCTCPA 57 (61)
T ss_dssp SSCBCCSSSCCCBCSSSSSSCCS-SCC--------SSCCCCTTTTTTC
T ss_pred CCEEEcCCCCHHHcccccCCCcC-cCC--------CCccCChhhcCch
Confidence 57999999999999999985321 233 2479999998653
No 43
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=96.05 E-value=0.0039 Score=50.26 Aligned_cols=51 Identities=20% Similarity=0.486 Sum_probs=40.6
Q ss_pred ccceEeecCCCCCCCceEeccchhhh-cCCCceeEeecc--cceeeccCCCCCC
Q 014692 51 RQAIFSCLSCAPEGNAGVCTACSLTC-HDGHEIVELWTK--RNFRCDCGNSKFG 101 (420)
Q Consensus 51 rQ~~y~C~tC~~~~~~giC~~Cs~~C-H~~H~l~el~~k--r~f~CDCG~~~~~ 101 (420)
-..+|.|+||..+..-.||..|-..- |.||+++-.... .+..||||....+
T Consensus 18 ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~eaw 71 (82)
T 3nis_A 18 GEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAW 71 (82)
T ss_dssp TCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGGB
T ss_pred CCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHHh
Confidence 35699999999987789999997764 999999644332 4678999998766
No 44
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=96.03 E-value=0.0047 Score=49.07 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=29.1
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014692 143 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 189 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~ 189 (420)
.+.||.|+.|..+||..|++.+-. .+|. .+.|+|+.|+.
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~PpL~-~~P~-------g~~W~C~~C~~ 76 (77)
T 3shb_A 38 PDKQLMCDECDMAFHIYCLDPPLS-SVPS-------EDEWYCPECRN 76 (77)
T ss_dssp GGGEEECTTTCCEEETTTSSSCCS-SCCS-------SSCCCCTTTC-
T ss_pred CcceeEeCCCCCccCcccCCCccc-CCCC-------CCceECcCccc
Confidence 478999999999999999984321 2442 34599999974
No 45
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=95.78 E-value=0.004 Score=52.56 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=32.4
Q ss_pred cceEEeCCCCCCCCcccccceeecc--ccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCcc
Q 014692 126 GVYCTCNRPYPDPDVEEQVEMIQCC--ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 188 (420)
Q Consensus 126 g~yC~C~rpypdp~~e~~~~MiQC~--~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~ 188 (420)
..||.+-+. .+.||.|+ .|..|||..||++.. +| ...|+|+.|.
T Consensus 15 ~~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~Cl~L~~---~P--------~g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGD--------GGELVMCDKKDCPKAYHLLCLNLTQ---PP--------YGKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCC--------CSEEEECCSTTCCCEECTGGGTCSS---CC--------SSCCCCGGGB
T ss_pred CCCCCcCCC--------CCcEeEECCCCCCcccccccCcCCc---CC--------CCCEECCCCC
Confidence 457764432 36899999 899999999999853 44 2468888774
No 46
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.62 E-value=0.0047 Score=47.63 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=28.8
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 144 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 144 ~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
+.||.|+.|..|||..|++.+-. .+| -..|+|+.|...
T Consensus 22 ~~ll~Cd~C~~~~H~~Cl~P~l~-~~P--------~g~W~C~~C~~~ 59 (66)
T 2lri_C 22 TDVLRCTHCAAAFHWRCHFPAGT-SRP--------GTGLRCRSCSGD 59 (66)
T ss_dssp TTCEECSSSCCEECHHHHCTTTC-CCC--------SSSCCCTTTTTC
T ss_pred CeEEECCCCCCceecccCCCccC-cCC--------CCCEECccccCC
Confidence 56999999999999999964321 234 246999999753
No 47
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=95.03 E-value=0.0086 Score=50.60 Aligned_cols=45 Identities=18% Similarity=0.413 Sum_probs=32.7
Q ss_pred EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014692 130 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 189 (420)
Q Consensus 130 ~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~ 189 (420)
+|+++.+ .+.||.|+.|..|||..|++.+-. .+| -..|+|+.|..
T Consensus 63 ~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P--------~g~W~C~~C~~ 107 (114)
T 2kwj_A 63 LCGTSEN------DDQLLFCDDCDRGYHMYCLNPPVA-EPP--------EGSWSCHLCWE 107 (114)
T ss_dssp TTTCCTT------TTTEEECSSSCCEEETTTSSSCCS-SCC--------SSCCCCHHHHH
T ss_pred cccccCC------CCceEEcCCCCccccccccCCCcc-CCC--------CCCeECccccc
Confidence 5666531 478999999999999999984321 234 24699999964
No 48
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=95.01 E-value=0.0096 Score=49.75 Aligned_cols=48 Identities=21% Similarity=0.578 Sum_probs=34.3
Q ss_pred eE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 128 YC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 128 yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
+| +|+++.. ...||+|+.|..|||..|++.+.. .+| -..|+|+.|...
T Consensus 56 ~C~~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P--------~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGE------DSKMLVCDTCDKGYHTFCLQPVMK-SVP--------TNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSC------CTTEEECSSSCCEEEGGGSSSCCS-SCC--------SSCCCCHHHHCC
T ss_pred cccccCccCC------CCCeeECCCCCcHHhHHhcCCccc-cCC--------CCCcCCcCCcCc
Confidence 45 5777642 357999999999999999974321 233 246899999654
No 49
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=94.86 E-value=0.016 Score=53.70 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=29.5
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 144 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 144 ~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
+.||.|+.|..|||..|++.+-. .+| -..|+|+.|....
T Consensus 17 g~ll~Cd~C~~~~H~~Cl~p~l~-~~p--------~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 17 GDLLCCEKCPKVFHLTCHVPTLL-SFP--------SGDWICTFCRDIG 55 (207)
T ss_dssp EEEEECSSSSCEECTTTSSSCCS-SCC--------SSCCCCTTTSCSS
T ss_pred CceEEcCCCCCccCCccCCCCCC-CCC--------CCCEEeCceeCcc
Confidence 56999999999999999964321 233 2469999998653
No 50
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=94.75 E-value=0.016 Score=54.82 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=26.2
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014692 143 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 189 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~ 189 (420)
.+.|+.|+.|..|||..|++.+-. .+|. -..|+|+.|..
T Consensus 186 ~~~lL~CD~C~~~yH~~CL~PPL~-~vP~-------G~~W~Cp~C~~ 224 (226)
T 3ask_A 186 PDKQLMCDECDMAFHIYCLDPPLS-SVPS-------EDEWYCPECRN 224 (226)
T ss_dssp --CCEECSSSCCEECSCC--CCCC-SCCS-------SSCCCCGGGC-
T ss_pred CCCeEEcCCCCcceeCccCCCCcc-cCCC-------CCCCCCcCCcC
Confidence 478999999999999999984322 2442 23799999974
No 51
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=94.65 E-value=0.02 Score=51.95 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=29.4
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 144 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 144 ~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
+.||.|+.|..|||..|++.+-. .+| -..|+|+.|....
T Consensus 14 g~ll~Cd~C~~~~H~~C~~p~l~-~~p--------~~~W~C~~C~~~~ 52 (184)
T 3o36_A 14 GELLCCEKCPKVFHLSCHVPTLT-NFP--------SGEWICTFCRDLS 52 (184)
T ss_dssp SSCEECSSSSCEECTTTSSSCCS-SCC--------SSCCCCTTTSCSS
T ss_pred CeeeecCCCCcccCccccCCCCC-CCC--------CCCEECccccCcc
Confidence 56999999999999999964321 233 2469999998653
No 52
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=94.63 E-value=0.024 Score=47.68 Aligned_cols=39 Identities=26% Similarity=0.525 Sum_probs=29.3
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 143 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
.+.||.|+.|..+||..|+..+-. .+| -..|+|+.|..+
T Consensus 74 ~~~ll~Cd~C~~~yH~~Cl~p~l~-~~P--------~~~W~C~~C~~k 112 (112)
T 3v43_A 74 ADNMLFCDSCDRGFHMECCDPPLT-RMP--------KGMWICQICRPR 112 (112)
T ss_dssp TCCCEECTTTCCEECGGGCSSCCS-SCC--------SSCCCCTTTSCC
T ss_pred ccceEEcCCCCCeeecccCCCCCC-CCC--------CCCeECCCCCCc
Confidence 368999999999999999954211 233 247999999754
No 53
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.99 E-value=0.072 Score=43.35 Aligned_cols=47 Identities=26% Similarity=0.689 Sum_probs=33.7
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 126 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 126 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
..+| +|++. +.||.|+.|...||..|+..+-. .+| -..|+|+.|...
T Consensus 25 ~~~C~vC~~~---------g~LL~CD~C~~~fH~~Cl~PpL~-~~P--------~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP---------GDLVMCNQCEFCFHLDCHLPALQ-DVP--------GEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS---------SCCEECTTSSCEECTTSSSTTCC-CCC--------SSSCCCCSCCCC
T ss_pred CCcCcCcCCC---------CCEEECCCCCCceecccCCCCCC-CCc--------CCCcCCccccCC
Confidence 4466 67754 46999999999999999943211 234 247999999854
No 54
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.07 E-value=0.048 Score=44.08 Aligned_cols=53 Identities=19% Similarity=0.553 Sum_probs=36.9
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCC---CCCCCCCCCCccCeeeccCccCC
Q 014692 126 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSD---EIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 126 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~---~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
..+| +|++... +. .+.||.|+.|...||..|++.+-.. .+| -..|+|+.|+..
T Consensus 16 ~~~C~vC~~~~~-~~---~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p--------~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTV-AS---GNQLVECQECHNLYHQDCHKPQVTDKEVNDP--------RLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCC-CT---TCCEEECSSSCCEEETTTSSSCCCHHHHHCT--------TCCCCCHHHHHH
T ss_pred CCcCCCCCCCCC-CC---CCceEECCCCCCeEcCccCCCcccccccCCC--------CCCeeCccccch
Confidence 3455 7888752 21 4689999999999999999753210 022 357999999754
No 55
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=92.38 E-value=0.062 Score=49.18 Aligned_cols=38 Identities=24% Similarity=0.557 Sum_probs=28.5
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 144 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 144 ~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
+.|+-|+.|..+||..|+..+-. .+| -..|+|+.|...
T Consensus 12 g~ll~Cd~C~~~~H~~Cl~p~l~-~~p--------~g~W~C~~C~~~ 49 (189)
T 2ro1_A 12 GDLVMCNQCEFCFHLDCHLPALQ-DVP--------GEEWSCSLCHVL 49 (189)
T ss_dssp SSCCCCTTTCCBCCSTTSTTCCS-SCC--------CTTCCTTTTSCS
T ss_pred CceeECCCCCchhccccCCCCcc-cCC--------CCCCCCcCccCC
Confidence 56999999999999999953211 233 246999999755
No 56
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.99 E-value=0.44 Score=39.46 Aligned_cols=44 Identities=16% Similarity=0.565 Sum_probs=31.4
Q ss_pred EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCcc
Q 014692 130 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 188 (420)
Q Consensus 130 ~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~ 188 (420)
+|+.+.. ...||.|..|...||..||++... .++ ...|.|+.|.
T Consensus 12 ~C~~~g~------~~~ll~C~~C~~~~H~~Cl~~~~~-~~~--------~~~W~C~~C~ 55 (111)
T 2ysm_A 12 VCDSPGD------LLDQFFCTTCGQHYHGMCLDIAVT-PLK--------RAGWQCPECK 55 (111)
T ss_dssp TTCCCCC------TTTSEECSSSCCEECTTTTTCCCC-TTT--------STTCCCTTTC
T ss_pred CCCCCCC------CcCCeECCCCCCCcChHHhCCccc-ccc--------ccCccCCcCC
Confidence 5666541 357999999999999999998532 111 2468888875
No 57
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.29 E-value=0.12 Score=43.32 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=27.8
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCcc
Q 014692 143 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 188 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~ 188 (420)
.+.||.|..|..+||..||++.+. +...-. -..|.|+.|.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~--~~~~~~----~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPE--LTVRVK----ALRWQCIECK 62 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHH--HHHHHH----TSCCCCTTTC
T ss_pred chhceEhhhcCCCCCCchhcCCHH--HHHHhh----ccccccccCC
Confidence 468999999999999999987421 000001 2468888885
No 58
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=66.52 E-value=2.4 Score=29.73 Aligned_cols=28 Identities=32% Similarity=0.720 Sum_probs=24.0
Q ss_pred eEeecCCCCCCCceEeccchhhhcCCCceeEe
Q 014692 54 IFSCLSCAPEGNAGVCTACSLTCHDGHEIVEL 85 (420)
Q Consensus 54 ~y~C~tC~~~~~~giC~~Cs~~CH~~H~l~el 85 (420)
-|-|.+|. .-||..|...=|.||.++.|
T Consensus 18 ~lfC~~~~----~~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 18 VLFCESCD----TLTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp CEEETTTT----EEECHHHHHTTTTTCCEEET
T ss_pred EEEeCCCC----EEEecccCCCcCCCCceecH
Confidence 47799995 48999999999999999765
No 59
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=65.38 E-value=4.5 Score=32.67 Aligned_cols=55 Identities=18% Similarity=0.417 Sum_probs=34.7
Q ss_pred ccceeeccccCceecccCC---CCCCCCCCCCCCCCCCccCeeeccCccCCCcccccc
Q 014692 143 QVEMIQCCICEDWFHEEHI---GLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTY 197 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Cl---g~~~~~~~p~~~~~~~~~~~fiC~~C~~~~~fL~~y 197 (420)
.+.|++|-+|-.=||..|+ |....+.....-.-...-.-|-|+.|-.-+..|..+
T Consensus 26 ~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lLLtEe 83 (89)
T 1wil_A 26 AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEE 83 (89)
T ss_dssp SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSSSCCC
T ss_pred ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhhcchh
Confidence 4789999999999999998 432211000000111124679999997766666644
No 60
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=62.37 E-value=3.4 Score=28.74 Aligned_cols=27 Identities=30% Similarity=0.812 Sum_probs=22.2
Q ss_pred EeecCCCCCCCceEeccch-hhhcCCCceeEe
Q 014692 55 FSCLSCAPEGNAGVCTACS-LTCHDGHEIVEL 85 (420)
Q Consensus 55 y~C~tC~~~~~~giC~~Cs-~~CH~~H~l~el 85 (420)
+-|.+|. ..||..|. ..=|.+|.++.|
T Consensus 19 lfC~~d~----~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 19 IYCLTCE----VPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp EEETTTT----EEECHHHHHHSTTTTSCEEEC
T ss_pred EEcCCCC----eeEcccccCCCcCCCCcEEeC
Confidence 6799985 48999998 458999999765
No 61
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=61.80 E-value=4.3 Score=28.79 Aligned_cols=29 Identities=28% Similarity=0.627 Sum_probs=24.0
Q ss_pred ceEeecCCCCCCCceEeccchh-hhcCCCceeEe
Q 014692 53 AIFSCLSCAPEGNAGVCTACSL-TCHDGHEIVEL 85 (420)
Q Consensus 53 ~~y~C~tC~~~~~~giC~~Cs~-~CH~~H~l~el 85 (420)
.-|-|.+|. .-||..|.. .=|.+|.++.|
T Consensus 18 l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 18 LSLFCYEDQ----EAVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp CCEEESSSC----SEECHHHHTSSTTTTSCEEEC
T ss_pred eeEEeCCCC----eEEeccccCCCCCCCCcEeeH
Confidence 346788885 489999998 89999999866
No 62
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.29 E-value=4.6 Score=33.60 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=20.1
Q ss_pred ccceeeccccCceecccCCCCC
Q 014692 143 QVEMIQCCICEDWFHEEHIGLE 164 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~ 164 (420)
.+.||.|..|...||..||++.
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCC
T ss_pred CCCCeEeCCCCCccchhhCCCh
Confidence 4789999999999999999874
No 63
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=54.27 E-value=3.4 Score=30.32 Aligned_cols=29 Identities=28% Similarity=0.691 Sum_probs=23.2
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeEee
Q 014692 54 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVELW 86 (420)
Q Consensus 54 ~y~C~tC~~~~~~giC~~Cs~-~CH~~H~l~el~ 86 (420)
-|-|.+|. .-||..|.. .=|.+|.++.|-
T Consensus 20 ~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l~ 49 (64)
T 2d8u_A 20 NIYCLTCE----VPTCSMCKVFGIHKACEVAPLQ 49 (64)
T ss_dssp CSEESSSC----CCCCSHHHHSSSTTSSCEECTT
T ss_pred ceEcCcCC----ceeCccccCCCcCCCCCeeCHH
Confidence 35799985 379999997 499999998653
No 64
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=54.15 E-value=6.2 Score=29.79 Aligned_cols=28 Identities=21% Similarity=0.492 Sum_probs=23.8
Q ss_pred eEeecCCCCCCCceEeccchhhhcCCCceeEe
Q 014692 54 IFSCLSCAPEGNAGVCTACSLTCHDGHEIVEL 85 (420)
Q Consensus 54 ~y~C~tC~~~~~~giC~~Cs~~CH~~H~l~el 85 (420)
-|-|.+|. .-||..|...=|.+|.++.|
T Consensus 29 ~lfC~~d~----~~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 29 ELFCQTDQ----TCICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp CEEESSSC----CEECHHHHHTTTSSSCEEEH
T ss_pred EEEeCCCC----eEEccccCCCCCCCCCEecH
Confidence 46798885 48999999999999999765
No 65
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=53.24 E-value=4.4 Score=31.36 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=24.2
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeEee
Q 014692 54 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVELW 86 (420)
Q Consensus 54 ~y~C~tC~~~~~~giC~~Cs~-~CH~~H~l~el~ 86 (420)
-|-|.+|. .-||..|.. .=|.||.++.|-
T Consensus 30 ~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l~ 59 (84)
T 2dja_A 30 NMYCVSDD----QLICALCKLVGRHRDHQVASLN 59 (84)
T ss_dssp CEEETTTT----EEECHHHHHTSTTTTCCBCCCC
T ss_pred cEEcCCCC----ceEcccCcCCCCCCCCCccCHH
Confidence 46799985 489999999 899999997654
No 66
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.37 E-value=8.6 Score=28.07 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=23.6
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeEee
Q 014692 54 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVELW 86 (420)
Q Consensus 54 ~y~C~tC~~~~~~giC~~Cs~-~CH~~H~l~el~ 86 (420)
-|-|.+|. .-||..|.. .=|.+|.++.|-
T Consensus 25 ~lfC~~d~----~~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 25 LLFCQEDG----KVICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp CEEETTTC----SEECHHHHTSTTTTTCCEEECC
T ss_pred eeecCCCC----cEEecccCCCCcCCCCcEeeHH
Confidence 46788874 489999998 899999998663
No 67
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=44.27 E-value=4.6 Score=27.12 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeE
Q 014692 54 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVE 84 (420)
Q Consensus 54 ~y~C~tC~~~~~~giC~~Cs~-~CH~~H~l~e 84 (420)
-|-|.+|. .-||..|.. .=|.||.++.
T Consensus 14 ~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 14 KLYCKDDG----TLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCCCSSS----SSSCCTTSSCSSCTTCCCCC
T ss_pred eEEeCCCC----eEEeccCCCCCCCCCCcEec
Confidence 34577764 479999998 7999999864
No 68
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.97 E-value=7.5 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=21.9
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeE
Q 014692 54 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVE 84 (420)
Q Consensus 54 ~y~C~tC~~~~~~giC~~Cs~-~CH~~H~l~e 84 (420)
-|-|.+|. .-||..|.. .-|.+|.++.
T Consensus 29 ~lfC~~d~----~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 29 KLFCEVDE----EAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp CEEETTTT----EEECHHHHHSHHHHSSCEEC
T ss_pred eEEcCCCC----cEEecccCCCCCCCCCcEec
Confidence 45677774 589999998 8999999864
No 69
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=35.63 E-value=17 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhc--CCCCccCHHHHHHHHH
Q 014692 381 IADMKDEFHNFLQSF--DPSKAITSDDVHQIFE 411 (420)
Q Consensus 381 Yn~mKdkL~~fLk~F--e~gkvVt~EDIk~FFe 411 (420)
+..||..|+.+=+.| ..|+.=+.+||++-=+
T Consensus 6 ~~~lk~~LK~WE~~F~~~~GRkP~k~DIk~~p~ 38 (56)
T 2kmu_A 6 LRDVRERLQAWERAFRRQRGRRPSQDDVEAAPE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHcCHH
Confidence 778999999999999 8899999999876544
No 70
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=35.08 E-value=17 Score=28.92 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.2
Q ss_pred ccceeeccccCceecccCCCCC
Q 014692 143 QVEMIQCCICEDWFHEEHIGLE 164 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~ 164 (420)
.+.++.|..|.-.+|..|+.++
T Consensus 58 ~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 58 TIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CSCEEECTTTCCCCCHHHHHCS
T ss_pred CCcEEEcCCCCCeEcHHhcCCC
Confidence 4788999999999999998664
No 71
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=34.96 E-value=34 Score=26.56 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=19.4
Q ss_pred HHHHHhhhhc-CCC--CccCHHHHHHHHHHHHH
Q 014692 386 DEFHNFLQSF-DPS--KAITSDDVHQIFENLAK 415 (420)
Q Consensus 386 dkL~~fLk~F-e~g--kvVt~EDIk~FFe~l~~ 415 (420)
..|..||.+| ..- .-||..||++|+..|.+
T Consensus 33 ~~l~~~i~~~~g~~~l~~it~~~i~~~~~~l~~ 65 (118)
T 2kd1_A 33 GYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRD 65 (118)
T ss_dssp HHHTTTHHHHTTSSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhCcCCHHhCCHHHHHHHHHHHHH
Confidence 3344444444 322 34899999999999864
No 72
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=33.05 E-value=29 Score=23.49 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=14.8
Q ss_pred CccCHHHHHHHHHHHHHhhh
Q 014692 399 KAITSDDVHQIFENLAKKRR 418 (420)
Q Consensus 399 kvVt~EDIk~FFe~l~~~~r 418 (420)
=+||++||+.==++.+..|+
T Consensus 5 ~~Vte~DIr~QE~rV~~aR~ 24 (36)
T 2l2l_B 5 FIVTDEDIRKQEERVQQVRK 24 (36)
T ss_dssp CCCCHHHHHHHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHH
Confidence 37999999987666665544
No 73
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=32.59 E-value=28 Score=29.70 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhc----------CCCCccCHHHHH
Q 014692 380 GIADMKDEFHNFLQSF----------DPSKAITSDDVH 407 (420)
Q Consensus 380 ~Yn~mKdkL~~fLk~F----------e~gkvVt~EDIk 407 (420)
+|..++.-|++||... ..-|+||.+||.
T Consensus 69 iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~ 106 (121)
T 2ly8_A 69 IYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHH
Confidence 6889999999998874 388999999996
No 74
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=31.67 E-value=45 Score=25.72 Aligned_cols=30 Identities=3% Similarity=0.222 Sum_probs=19.6
Q ss_pred HHHHHhhhhc-CC--CCccCHHHHHHHHHHHHH
Q 014692 386 DEFHNFLQSF-DP--SKAITSDDVHQIFENLAK 415 (420)
Q Consensus 386 dkL~~fLk~F-e~--gkvVt~EDIk~FFe~l~~ 415 (420)
..|..||.++ .. =.-||..||++|+..|.+
T Consensus 33 ~~l~~~i~~~~g~~~l~~it~~~i~~~~~~l~~ 65 (116)
T 2kj5_A 33 SRIEKDIKPAIGSLKVEDVKPRHIDDVLKAVMK 65 (116)
T ss_dssp HHHHHTTSCSGGGSBSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHCCCcHhhCCHHHHHHHHHHHHH
Confidence 3355555444 22 234899999999998864
No 75
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=30.93 E-value=36 Score=26.74 Aligned_cols=31 Identities=3% Similarity=0.133 Sum_probs=21.7
Q ss_pred HHHHHHhhhhc-CCC--CccCHHHHHHHHHHHHH
Q 014692 385 KDEFHNFLQSF-DPS--KAITSDDVHQIFENLAK 415 (420)
Q Consensus 385 KdkL~~fLk~F-e~g--kvVt~EDIk~FFe~l~~ 415 (420)
+..|..|+.++ ..- .-||..||++|+..|.+
T Consensus 32 ~~~l~~~i~~~~g~~~l~~It~~~i~~~~~~l~~ 65 (121)
T 2kkv_A 32 LRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDT 65 (121)
T ss_dssp HHHHHHHHSSSSTTSCTTCCCSGGGHHHHHHHHH
T ss_pred HHHHHhhcCchhcCCCHHHcCHHHHHHHHHHHHH
Confidence 44566667665 332 34899999999998864
No 76
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=29.80 E-value=66 Score=24.67 Aligned_cols=17 Identities=0% Similarity=0.255 Sum_probs=13.9
Q ss_pred CccCHHHHHHHHHHHHH
Q 014692 399 KAITSDDVHQIFENLAK 415 (420)
Q Consensus 399 kvVt~EDIk~FFe~l~~ 415 (420)
.-||..||++|+..|.+
T Consensus 45 ~~It~~~i~~~~~~l~~ 61 (106)
T 2khv_A 45 QDVDTKLIMKVLDPIWE 61 (106)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHH
Confidence 34899999999998753
No 77
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=28.67 E-value=79 Score=26.07 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=25.6
Q ss_pred HHHHHHhhhhc---CCCCccCHHHHHHHHHHHHH
Q 014692 385 KDEFHNFLQSF---DPSKAITSDDVHQIFENLAK 415 (420)
Q Consensus 385 KdkL~~fLk~F---e~gkvVt~EDIk~FFe~l~~ 415 (420)
|.+|..+|... .-...++++++|+|.-.|..
T Consensus 58 k~kv~~Wl~~Ln~M~AsdeL~e~q~RqllfDle~ 91 (102)
T 2j9w_A 58 REKVSQWLQKLSSMSASDELDDSQVRQMLFDLES 91 (102)
T ss_dssp HHHHHHHHHHHHTSCTTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHH
Confidence 67899999888 44688999999999877753
No 78
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=28.24 E-value=15 Score=32.16 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=29.1
Q ss_pred ccceeeccccCceecccCCCCCCCC-CCCCC-CCCCCccCeeeccCccCC
Q 014692 143 QVEMIQCCICEDWFHEEHIGLEPSD-EIPRD-DEGEPVYEDFICKACSAV 190 (420)
Q Consensus 143 ~~~MiQC~~CEDWfH~~Clg~~~~~-~~p~~-~~~~~~~~~fiC~~C~~~ 190 (420)
.+..|-|+.|-.=||..||..+-.. .+... .. -+.|.|+.|..+
T Consensus 72 GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p----~~~W~C~~C~~~ 117 (142)
T 2lbm_A 72 GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDE----NNQWYCYICHPE 117 (142)
T ss_dssp CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTS----TTCCCCTTTCCC
T ss_pred CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccC----CCCCEeecccCc
Confidence 4789999999999999999642110 00000 01 357999999754
No 79
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=28.06 E-value=23 Score=25.91 Aligned_cols=41 Identities=15% Similarity=0.506 Sum_probs=19.8
Q ss_pred eeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014692 147 IQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 189 (420)
Q Consensus 147 iQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~ 189 (420)
.+|.+|. |-+..=.|-+.. +++..-.=+.+-+.|+||.|-.
T Consensus 4 y~C~vCG-yvYd~~~Gdp~~-gi~pGt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 4 YTCTVCG-YIYDPEDGDPDD-GVNPGTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp EEETTTC-CEECTTTCBGGG-TBCTTCCGGGSCTTCBCTTTCC
T ss_pred eECCCCC-eEECCCcCCccc-CcCCCCChhHCCCCCcCcCCCC
Confidence 5777876 333333332211 2222111111256899999964
No 80
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=27.88 E-value=63 Score=25.26 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=14.1
Q ss_pred CccCHHHHHHHHHHHHH
Q 014692 399 KAITSDDVHQIFENLAK 415 (420)
Q Consensus 399 kvVt~EDIk~FFe~l~~ 415 (420)
.-||..||++|+..|.+
T Consensus 48 ~~It~~~i~~~~~~l~~ 64 (118)
T 2kj8_A 48 QDIEPMQLLEVIRRFED 64 (118)
T ss_dssp TSCCHHHHHHHHHHHHT
T ss_pred HHCCHHHHHHHHHHHHH
Confidence 35899999999998864
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=27.83 E-value=20 Score=28.25 Aligned_cols=28 Identities=25% Similarity=0.603 Sum_probs=23.0
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeEe
Q 014692 54 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVEL 85 (420)
Q Consensus 54 ~y~C~tC~~~~~~giC~~Cs~-~CH~~H~l~el 85 (420)
-|-|.+|. .-||..|.. .=|.||.++.|
T Consensus 71 ~~fC~~~~----~~iC~~C~~~~~H~~H~~~~l 99 (101)
T 2jun_A 71 NMYCVTDD----QLICALCKLVGRHRDHQVAAL 99 (101)
T ss_dssp CEEETTTT----EEECHHHHHHTTTSSSCBCCC
T ss_pred eEECCCCC----CccchhcCCCCCcCCCCeecC
Confidence 46788884 589999997 79999998754
No 82
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.11 E-value=26 Score=28.13 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCccCHHHHHH
Q 014692 372 VEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQ 408 (420)
Q Consensus 372 vqaiE~i~~Yn~mKdkL~~fLk~Fe~gkvVt~EDIk~ 408 (420)
.+=|..||.||.+||-=...+.....-+-||--||..
T Consensus 41 ~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv~~~~v~~ 77 (85)
T 3viq_B 41 QKHIDLLHTYNEIRDIALGMIGKVAEHEKCTSVELFD 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 4568999999999998887777762223355555543
No 83
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=26.59 E-value=41 Score=36.87 Aligned_cols=62 Identities=23% Similarity=0.519 Sum_probs=38.2
Q ss_pred CCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCC-----------C--CCCCCCCCCCc-cCeeeccCccC
Q 014692 124 FKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPS-----------D--EIPRDDEGEPV-YEDFICKACSA 189 (420)
Q Consensus 124 f~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~-----------~--~~p~~~~~~~~-~~~fiC~~C~~ 189 (420)
..=.||.|+.| .-.++|..|..||=..--+...+ . .+..+. |+ -..+-|..|-.
T Consensus 12 ~~c~yc~~~~~---------~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~---~~~~~~~~c~~c~~ 79 (802)
T 2xzl_A 12 NSCAYCGIDSA---------KCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDS---DLGDTVLECYNCGR 79 (802)
T ss_dssp CCCTTTCCCCT---------TTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTS---SSCSCBCCCSSSCC
T ss_pred hhCcccCCCCC---------ceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCC---CCCCceeEeecCCC
Confidence 34568888855 36799999999996654433211 0 111111 11 13678999998
Q ss_pred CCcccccc
Q 014692 190 VCSFLSTY 197 (420)
Q Consensus 190 ~~~fL~~y 197 (420)
++.|+.-|
T Consensus 80 ~n~f~lg~ 87 (802)
T 2xzl_A 80 KNVFLLGF 87 (802)
T ss_dssp CCTTTEEE
T ss_pred Cceeeeee
Confidence 88877643
No 84
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=26.41 E-value=48 Score=25.44 Aligned_cols=30 Identities=7% Similarity=0.191 Sum_probs=19.7
Q ss_pred HHHHHhhhhc-CC--CCccCHHHHHHHHHHHHH
Q 014692 386 DEFHNFLQSF-DP--SKAITSDDVHQIFENLAK 415 (420)
Q Consensus 386 dkL~~fLk~F-e~--gkvVt~EDIk~FFe~l~~ 415 (420)
..|..||.++ .. =.-||..||++|+..|.+
T Consensus 35 ~~~~~~i~~~~g~~~l~~It~~~i~~~~~~l~~ 67 (117)
T 2kkp_A 35 TVLRLHVIPTLGSIPLKKLQPADIQRLYASKLE 67 (117)
T ss_dssp HHHHHHHCCCCCTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCceEHHHCCHHHHHHHHHHHHH
Confidence 3444455554 32 234899999999998864
No 85
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.26 E-value=71 Score=22.97 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=9.0
Q ss_pred cCeeeccCccC
Q 014692 179 YEDFICKACSA 189 (420)
Q Consensus 179 ~~~fiC~~C~~ 189 (420)
-+.|+|+.|-.
T Consensus 34 P~dw~CP~Cg~ 44 (52)
T 1e8j_A 34 PDDWACPVCGA 44 (52)
T ss_dssp CTTCCCSSSCC
T ss_pred CCCCcCCCCCC
Confidence 57899999964
No 86
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=24.42 E-value=76 Score=24.57 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=18.8
Q ss_pred HHHHhhhhcCCCCccCHHHHHHHHHHHHH
Q 014692 387 EFHNFLQSFDPSKAITSDDVHQIFENLAK 415 (420)
Q Consensus 387 kL~~fLk~Fe~gkvVt~EDIk~FFe~l~~ 415 (420)
.|..||... .=.-||..||++|+..|.+
T Consensus 38 ~i~p~~g~~-~l~~It~~~i~~~~~~l~~ 65 (112)
T 3lys_A 38 YLKTYMPNV-LISEITASSYQRALNKFAE 65 (112)
T ss_dssp HHHHHSSSC-BTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCC-CHHhCCHHHHHHHHHHHHH
Confidence 455554222 2245899999999999864
No 87
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=24.16 E-value=44 Score=36.64 Aligned_cols=62 Identities=21% Similarity=0.487 Sum_probs=38.3
Q ss_pred CCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCC-----------C--CCCCCCCCCCc-cCeeeccCccC
Q 014692 124 FKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPS-----------D--EIPRDDEGEPV-YEDFICKACSA 189 (420)
Q Consensus 124 f~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clg~~~~-----------~--~~p~~~~~~~~-~~~fiC~~C~~ 189 (420)
..=.||.|+.| .-.++|..|..||=..--+...+ . .+..+ .++ -..+-|..|-.
T Consensus 7 ~~c~~c~~~~~---------~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~---~~~~~~~~ec~~c~~ 74 (800)
T 2wjy_A 7 HACSYCGIHDP---------ACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKD---GPLGETVLECYNCGC 74 (800)
T ss_dssp TSCTTTCCCCG---------GGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTT---STTCSCBCCCTTTCC
T ss_pred hhccccCCCCC---------CeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCC---CCCCCceEEEeccCC
Confidence 44568888854 46899999999996654433211 0 01110 010 24677999988
Q ss_pred CCcccccc
Q 014692 190 VCSFLSTY 197 (420)
Q Consensus 190 ~~~fL~~y 197 (420)
++.|+.-|
T Consensus 75 ~n~f~lg~ 82 (800)
T 2wjy_A 75 RNVFLLGF 82 (800)
T ss_dssp CCTTTCEE
T ss_pred Cceeeeec
Confidence 88887643
No 88
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.14 E-value=51 Score=26.49 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=25.1
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 144 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 144 ~~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
..+.+|.+|. |-+..=.|-+.. +++..-.=+.+-+.|+|+.|-..
T Consensus 33 m~~y~C~vCG-yvYD~~~Gdp~~-gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCG-HIYDEALGDEAE-GFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTT-EEEETTSCCTTT-TCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCC-eEecCCcCCccc-CcCCCCChhHCCCCCCCCCCCCC
Confidence 4568999998 555554444322 23321111112568999999643
No 89
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=23.21 E-value=50 Score=23.62 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=11.8
Q ss_pred HHHHhhhhc--CCCCccCHHHHHHHHHH
Q 014692 387 EFHNFLQSF--DPSKAITSDDVHQIFEN 412 (420)
Q Consensus 387 kL~~fLk~F--e~gkvVt~EDIk~FFe~ 412 (420)
.+..+++.+ +....|+-++...++..
T Consensus 39 ~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 66 (78)
T 1k9u_A 39 EVQRMMAEIDTDGDGFIDFNEFISFCNA 66 (78)
T ss_dssp HHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 344455554 22334555555444443
No 90
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.06 E-value=62 Score=25.61 Aligned_cols=44 Identities=20% Similarity=0.550 Sum_probs=21.9
Q ss_pred ceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014692 145 EMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 190 (420)
Q Consensus 145 ~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~ 190 (420)
...+|.+|. |-+..=.|-+.. +++..-.=+.+-+.|+||.|-..
T Consensus 26 ~~y~C~vCG-yvYD~~~Gdp~~-gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 26 KLFRCIQCG-FEYDEALGWPED-GIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CEEEETTTC-CEEETTTCBTTT-TBCTTCCTTTSCTTCCCTTTCCC
T ss_pred ceEEeCCCC-EEEcCCcCCccc-CcCCCCChhHCCCCCcCCCCCCC
Confidence 357888887 333333333221 22221111112568999999643
No 91
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=21.50 E-value=81 Score=25.52 Aligned_cols=42 Identities=29% Similarity=0.580 Sum_probs=26.1
Q ss_pred ceEeecCCCCCCCceEeccchhhhc-CCCceeEe-ecccceeeccCCCC
Q 014692 53 AIFSCLSCAPEGNAGVCTACSLTCH-DGHEIVEL-WTKRNFRCDCGNSK 99 (420)
Q Consensus 53 ~~y~C~tC~~~~~~giC~~Cs~~CH-~~H~l~el-~~kr~f~CDCG~~~ 99 (420)
.+|.|.+|.- ....=+..|= .+|+|.-. -.||-|+|.|++..
T Consensus 14 ~av~C~~C~y-----t~~~~~~~C~~~~H~l~~~~a~KRFFkC~C~~Rt 57 (92)
T 2kwq_A 14 RVVTCKTCKY-----THFKPKETCVSENHDFHWHNGVKRFFKCPCGNRT 57 (92)
T ss_dssp EEEEETTTCC-----EESSCCHHHHHTTCCEEEEEEECEEEECTTSCEE
T ss_pred EEEEccCCcc-----eecCcchhHHhcCCceEEEeeeEEEEECCCCCce
Confidence 5788888863 3333334443 57777432 23699999998744
No 92
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=21.04 E-value=1e+02 Score=24.20 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=31.9
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHhhhhc--CCCCccCHHHHHHHHHHHHH
Q 014692 365 FLNKLGHVEKMEILNGIADMKDEFHNFLQSF--DPSKAITSDDVHQIFENLAK 415 (420)
Q Consensus 365 aL~sl~RvqaiE~i~~Yn~mKdkL~~fLk~F--e~gkvVt~EDIk~FFe~l~~ 415 (420)
.|..|-+-.+-.-+.+|...=..+..||... ..=..||.+||++|...|++
T Consensus 16 fl~~l~~~~s~~Ti~~Y~~~l~~f~~~l~~~~~~~l~~it~~~i~~y~~~l~~ 68 (117)
T 3nrw_A 16 YLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRG 68 (117)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHHHHHHTTCCSGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCChHHCCHHHHHHHHHHHHh
Confidence 4443334445556777765555555555443 13357999999999998864
No 93
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.67 E-value=97 Score=23.67 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=24.3
Q ss_pred ceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014692 145 EMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 191 (420)
Q Consensus 145 ~MiQC~~CEDWfH~~Clg~~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 191 (420)
...+|.+|. |-+..=.|-+.. +++..-.=+.+-+.|+||.|-...
T Consensus 6 ~~y~C~vCG-yiYd~~~Gdp~~-gi~pGT~f~~lPddw~CP~Cga~K 50 (70)
T 1dx8_A 6 GKYECEACG-YIYEPEKGDKFA-GIPPGTPFVDLSDSFMCPACRSPK 50 (70)
T ss_dssp SCEEETTTC-CEECTTTCCTTT-TCCSSCCGGGSCTTCBCTTTCCBG
T ss_pred ceEEeCCCC-EEEcCCCCCccc-CcCCCCchhhCCCCCcCCCCCCCH
Confidence 457899997 445444443322 233211111125689999996543
No 94
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.28 E-value=33 Score=28.47 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=12.7
Q ss_pred CccCHHHHHHHHHHH
Q 014692 399 KAITSDDVHQIFENL 413 (420)
Q Consensus 399 kvVt~EDIk~FFe~l 413 (420)
--+|++||++||+.+
T Consensus 33 ~~~te~dl~~~F~~~ 47 (123)
T 2dha_A 33 FTATAEEVVAFFGQH 47 (123)
T ss_dssp TTCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhh
Confidence 348999999999875
No 95
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=20.23 E-value=1.2e+02 Score=22.04 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=13.8
Q ss_pred ccCHHHHHHHHHHHHH
Q 014692 400 AITSDDVHQIFENLAK 415 (420)
Q Consensus 400 vVt~EDIk~FFe~l~~ 415 (420)
-||.+||++|+..|.+
T Consensus 45 ~it~~~i~~~~~~l~~ 60 (103)
T 2oxo_A 45 DITTKEIAAMLNGYID 60 (103)
T ss_dssp GCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 4899999999998864
No 96
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=20.20 E-value=82 Score=24.82 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=18.5
Q ss_pred HHHHHHhhhhc-CC--CCccCHHHHHHHHHHHHH
Q 014692 385 KDEFHNFLQSF-DP--SKAITSDDVHQIFENLAK 415 (420)
Q Consensus 385 KdkL~~fLk~F-e~--gkvVt~EDIk~FFe~l~~ 415 (420)
+..|..++.|+ .. =.-||..||++|+..|.+
T Consensus 36 ~~~l~~~i~p~~G~~~l~~It~~~i~~~l~~l~~ 69 (118)
T 2kj9_A 36 WTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEK 69 (118)
T ss_dssp HHHHHHTSSTTGGGSBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCCHHHCCHHHHHHHHHHHHH
Confidence 34455455443 22 234788888888888753
Done!