BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014696
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G+RL+ AA +G+ K L+E + + G +PLH++A GH E+V LLI G D
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISKGAD 62
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N ++ G+T L A ++GH EVV LI A+++ D +G T LH AA NGH ++L
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKL 121
Query: 137 LLA 139
L++
Sbjct: 122 LIS 124
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 24/162 (14%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A ++G+ + V LI A+++ +D +G T LH AA NGH ++LL++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHHAAENGHKEVVKLLIS------KG 60
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
A + +T L H NGH E V+LL+ GA V+ S G
Sbjct: 61 ADVNAKDSDGRT--------------PLHHAAENGHKEVVKLLISKGADVNAKDS---DG 103
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARS 249
T LH+AA G+ + ++LI+ GA + +++G TPL +AR
Sbjct: 104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE 145
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLH++A GH E+V LLI G D+N ++ G+T L A ++GH EVV LI A+++
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131
Query: 113 ADYLNGGTALHLAALNGHSRCIRLL 137
+D +G T L LA +G+ ++LL
Sbjct: 132 SDS-DGRTPLDLAREHGNEEVVKLL 155
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
L H NGH E V+LL+ GA V+ S G T LH+AA G+ + ++LI+ GA +
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDS---DGRTPLHHAAENGHKEVVKLLISKGADVN 97
Query: 235 AENANGWTPL-MVARSWHRTGLE-------DILSTQPEGR 266
A++++G TPL A + H+ ++ D+ ++ +GR
Sbjct: 98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR 137
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
L+ NG+ + V+ L++ GA V+ S G T LH+AA G+ + ++LI+ GA +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDS---DGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 235 AENANGWTPL-MVARSWHR 252
A++++G TPL A + H+
Sbjct: 65 AKDSDGRTPLHHAAENGHK 83
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G+RL+ AA +G+ K L+E + + G +PLHY+A +GH EIV LLI G D
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHYAAKEGHKEIVKLLISKGAD 62
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N ++ G+T L A + GH E+V LI A+++ D +G T LH AA GH ++L
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS-DGRTPLHYAAKEGHKEIVKL 121
Query: 137 LLA 139
L++
Sbjct: 122 LIS 124
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLHY+A +GH EIV LLI G D+N ++ G+T L A + GH E+V LI A+++
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT 131
Query: 113 ADYLNGGTALHLAALNGHSRCIRLL 137
+D +G T L LA +G+ ++LL
Sbjct: 132 SDS-DGRTPLDLAREHGNEEIVKLL 155
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 24/175 (13%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A ++G+ + V LI A+++ +D +G T LH AA GH ++LL++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHYAAKEGHKEIVKLLIS------KG 60
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
A + +T L + GH E V+LL+ GA V+ S G
Sbjct: 61 ADVNAKDSDGRT--------------PLHYAAKEGHKEIVKLLISKGADVNAKDS---DG 103
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
T LHYAA G+ + ++LI+ GA + +++G TPL +AR + +L Q
Sbjct: 104 RTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G+RL+ AA +G+ K LLE + + G +PLH +A GH E+V LL+ G D
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDG--KTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
N ++ G+T L A ++GH EVV L+ A+ + D +G T LHLAA NGH ++L
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS-DGKTPLHLAAENGHKEVVKL 121
Query: 137 LLA 139
LL+
Sbjct: 122 LLS 124
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 26/163 (15%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A ++G+ + V L+ A+++ +D +G T LHLAA NGH ++LLL+ + PN
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDS-DGKTPLHLAAENGHKEVVKLLLSQG--ADPN 64
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGA 206
A + K LHL NGH E V+LLL GA + S
Sbjct: 65 AKDSDGK-------------------TPLHLAAENGHKEVVKLLLSQGADPNAKDS---D 102
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARS 249
G T LH AA G+ + ++L++ GA +++G TPL +AR
Sbjct: 103 GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLARE 145
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLH +A GH E+V LL+ G D N ++ G+T L A ++GH EVV L+ A+ +
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNT 131
Query: 113 ADYLNGGTALHLAALNGHSRCIRLL 137
+D +G T L LA +G+ ++LL
Sbjct: 132 SDS-DGRTPLDLAREHGNEEVVKLL 155
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL NGH E V+LLL GA + S G T LH AA G+ + ++L++ GA
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDS---DGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 235 AENANGWTPL-MVARSWHR 252
A++++G TPL + A + H+
Sbjct: 98 AKDSDGKTPLHLAAENGHK 116
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
L+ NG+ + V+ LL+ GA V+ + G T LH AA G+ + ++L++ GA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVN---ASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 235 AENANGWTPL-MVARSWHR 252
A++++G TPL + A + H+
Sbjct: 65 AKDSDGKTPLHLAAENGHK 83
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G+RL+ AA +G+ K LLE + G +PLHY+A GH EIV LL+ G D
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDG--RTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
N ++ G+T L A ++GH E+V L+L K A +G T LH AA NGH ++L
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 137 LLA 139
LL+
Sbjct: 122 LLS 124
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A ++G+ + V L+ A+ + +D +G T LH AA NGH ++LLL+ + PN
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDS-DGRTPLHYAAENGHKEIVKLLLSKG--ADPN 64
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
A + D R L + NGH E V+LLL GA + + G
Sbjct: 65 AK--------------DSDGRT----PLHYAAENGHKEIVKLLLSKGADPN---AKDSDG 103
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
T LHYAA G+ + ++L++ GA +++G TPL +AR + +L Q
Sbjct: 104 RTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLHY+A GH EIV LL+ G D N ++ G+T L A ++GH E+V L+ A+ +
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNT 131
Query: 113 ADYLNGGTALHLAALNGHSRCIRLL 137
+D +G T L LA +G+ ++LL
Sbjct: 132 SDS-DGRTPLDLAREHGNEEIVKLL 155
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 5/140 (3%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + T+G ++PLH +A GH EIV +L+++G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYG--DTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N ++ G T L A + GH E+V L+ Y A+++ D + G T LHLAA GH + +
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI-GSTPLHLAADTGHLEIVEV 131
Query: 137 LLADYIPSVPNAWNRLRKKS 156
LL Y V NA ++ K +
Sbjct: 132 LLK-YGADV-NAQDKFGKTA 149
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AAR G L+ + LL+ + G ++PLH +A +GH EIV +L++ G D+N +
Sbjct: 54 AARVGHLEIVEVLLKNGADVNALDFSG--STPLHLAAKRGHLEIVEVLLKYGADVNADDT 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A GH E+V L+ Y A+++ D G TA ++ NG+ +L
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A + G + V L+ A+++ D G T LHLAA GH + +LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHLEIVEVLL--------- 67
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLN-GHVESVQLLLDLGASVSEYLSVSGA 206
K G+ + + F LHL GH+E V++LL GA V+ ++
Sbjct: 68 ----------KNGA--DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI--- 112
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDIL 259
GST LH AA G+ + ++L+ GA + A++ G T ++ L +IL
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 82.8 bits (203), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 79/144 (54%), Gaps = 23/144 (15%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLH +A GH E+V LL+E+G D+N ++ G+T L A ++GH EVV L+ A+++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
D NG T LHLAA NGH ++LLL A + K+ +T
Sbjct: 64 KDK-NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTP------------ 104
Query: 173 EVLLHLTL-NGHVESVQLLLDLGA 195
LHL NGH+E V+LLL+ GA
Sbjct: 105 ---LHLAARNGHLEVVKLLLEAGA 125
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 26/137 (18%)
Query: 117 NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL 176
NG T LHLAA NGH ++LLL A + K+ +T L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTP---------------L 39
Query: 177 HLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
HL NGH+E V+LLL+ GA V+ + G T LH AA G+ + ++L+ GA + A
Sbjct: 40 HLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96
Query: 236 ENANGWTPL-MVARSWH 251
++ NG TPL + AR+ H
Sbjct: 97 KDKNGRTPLHLAARNGH 113
Score = 63.2 bits (152), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 26/149 (17%)
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIP 143
G+T L A ++GH EVV L+ A+++ D NG T LHLAA NGH ++LLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 144 SVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGASVSEYLS 202
A + K+ +T LHL NGH+E V+LLL+ GA V+ +
Sbjct: 57 --AGADVNAKDKNGRTP---------------LHLAARNGHLEVVKLLLEAGADVN---A 96
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGA 231
G T LH AA G+ + ++L+ GA
Sbjct: 97 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 76.6 bits (187), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLH +A GH E+V LL+E+G D+N ++ G+T L A ++GH EVV L+ A+++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL 138
D NG T LHLAA NGH ++LLL
Sbjct: 64 KDK-NGRTPLHLAARNGHLEVVKLLL 88
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL NGH+E V+LLL+ GA V+ + G T LH AA G+ + ++L+ GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 235 AENANGWTPL-MVARSWH 251
A++ NG TPL + AR+ H
Sbjct: 63 AKDKNGRTPLHLAARNGH 80
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIP 143
G+T L A ++GH EVV L+ A+++ D NG T LHLAA NGH ++LLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 144 SVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGA 195
A + K+ +T LHL NGH+E V+LLL+ GA
Sbjct: 57 --AGADVNAKDKNGRTP---------------LHLAARNGHLEVVKLLLEAGA 92
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 25/116 (21%)
Query: 117 NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL 176
NG T LHLAA NGH ++LLL A + K+ +T L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTP---------------L 39
Query: 177 HLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
HL NGH+E V+LLL+ GA V+ + G T LH AA G+ + ++L+ GA
Sbjct: 40 HLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESG 74
AAR+G L+ K LLE + G +PLH +A GH E+V LL+E+G
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNG--RTPLHLAARNGHLEVVKLLLEAG 91
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL-MVARSWH 251
G T LH AA G+ + ++L+ GA + A++ NG TPL + AR+ H
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 47
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G ++PLH +A GH EIV +L++ G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLG--HTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A +GH E+V L+ + A+++ DY G T LHLAA +GH + +
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY-EGFTPLHLAAYDGHLEIVEV 131
Query: 137 LLADYIPSVPNAWNRLRKKS 156
LL Y V NA ++ K +
Sbjct: 132 LLK-YGADV-NAQDKFGKTA 149
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA+ G L+ + LL+Y + + +G +PLH +A GH EIV +L++ G D+N ++Y
Sbjct: 54 AAKTGHLEIVEVLLKYGADVNAWDNYGA--TPLHLAADNGHLEIVEVLLKHGADVNAKDY 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A GH E+V L+ Y A+++ D G TA ++ NG+ +L
Sbjct: 112 EGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 176 LHLTLN-GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL GH+E V++LL GA V+ + G+T LH AA G+ + ++L+ GA +
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAW---DNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 235 AENANGWTPLMVA 247
A++ G+TPL +A
Sbjct: 108 AKDYEGFTPLHLA 120
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + G T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN---ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 235 AENANGWTPLMVA 247
A + G TPL +A
Sbjct: 75 AWDNYGATPLHLA 87
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A +GH EIV +L+++G D
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGAD 60
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N ++ G T L A + GH E+V L+ A+++ D +G T LHLAA GH + +
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 137 LL 138
LL
Sbjct: 120 LL 121
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AAR+G L+ + LL+ + G +PLH +A +GH EIV +L+++G D+N ++
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVNAKDK 99
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A + GH E+V L+ A+++ D G T LA NG+ +L
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF-GKTPFDLAIDNGNEDIAEVL 153
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A + G + V L+ A+++ D +G T LHLAA GH + +LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL--------- 55
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGA 206
K G+ + ++ + LHL GH+E V++LL GA V+ +
Sbjct: 56 ----------KAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVN---AKDKD 100
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDI 258
G T LH AA G+ + ++L+ GA + A++ G TP +A G EDI
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAID---NGNEDI 149
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G+ +PLH +A GH EIV +L++ G D
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGL--TPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
++ + G T L A GH E+V L+ Y A+++ D + G T LHLAA GH + +
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLEIVEV 131
Query: 137 LLADYIPSVPNAWNRLRKKS 156
LL Y V NA ++ K +
Sbjct: 132 LLK-YGADV-NAQDKFGKTA 149
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA G L+ + LL++ + +G +PLH +A GH EIV +L++ G D+N +
Sbjct: 54 AAVSGHLEIVEVLLKHGADVDAADVYGF--TPLHLAAMTGHLEIVEVLLKYGADVNAFDM 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIR 135
G T L A GH E+V L+ Y A+++ D G TA ++ NG+ +
Sbjct: 112 TGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF-GKTAFDISIDNGNEDLAK 163
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 26/161 (16%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A + G + V LI A+++ D G T LHLAA++GH + +LL
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDN-TGLTPLHLAAVSGHLEIVEVLL--------- 67
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLT-LNGHVESVQLLLDLGASVSEYLSVSGA 206
K G+ ++ + Y LHL + GH+E V++LL GA V+ +
Sbjct: 68 ----------KHGADVDAADVYGFTP--LHLAAMTGHLEIVEVLLKYGADVNAF---DMT 112
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
GST LH AA G+ + ++L+ GA + A++ G T ++
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A +GH EIV +L+++G D
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGAD 60
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N ++ G T L A + GH E+V L+ A+++ D +G T LHLAA GH + +
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 119
Query: 137 LL 138
LL
Sbjct: 120 LL 121
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AAR+G L+ + LL+ + G +PLH +A +GH EIV +L+++G D+N ++
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVNAKDK 99
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A + GH E+V L+ A+++ D G T LA GH +L
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF-GKTPFDLAIREGHEDIAEVL 153
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 29/172 (16%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A + G + V L+ A+++ D +G T LHLAA GH + +LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL--------- 55
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGA 206
K G+ + ++ + LHL GH+E V++LL GA V+ +
Sbjct: 56 ----------KAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVN---AKDKD 100
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDI 258
G T LH AA G+ + ++L+ GA + A++ G TP +A R G EDI
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI---REGHEDI 149
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A +GH EIV +L+++G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N ++ G T L A + GH E+V L+ A+++ D +G T LHLAA GH + +
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AAR+G L+ + LL+ + G +PLH +A +GH EIV +L+++G D+N ++
Sbjct: 54 AAREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVNAKDK 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A + GH E+V L+ A+++ D G TA ++ NG+ +L
Sbjct: 112 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL GH+E V++LL GA V+ + G T LH AA G+ + ++L+ GA +
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVN---AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 235 AENANGWTPL-MVARSWH 251
A++ +G+TPL + AR H
Sbjct: 108 AKDKDGYTPLHLAAREGH 125
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + G T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN---AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 235 AENANGWTPL-MVARSWH 251
A++ +G+TPL + AR H
Sbjct: 75 AKDKDGYTPLHLAAREGH 92
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + FG+ +PLH GH EI+ +L++ D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGI--TPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+V L+ Y A+++ DY G T LHLAA +GH + +
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-QGYTPLHLAAEDGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLH +A +GH EIV +L++ G D+N +Y+G T L A + GH E+V L+ Y A+++
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 113 ADYLNGGTALHLAALNGHSRCIRLL 137
D G TA ++ NG+ +L
Sbjct: 142 QDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 176 LHLTLN-GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL +N GH+E +++LL A V+ + +G T LH AA G+ + ++L+ GA +
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVN---ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 235 AENANGWTPLMVA 247
A + G+TPL +A
Sbjct: 108 AMDYQGYTPLHLA 120
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + G T LH G+ + ++L+ A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN---ANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 235 AENANGWTPLMVA 247
A + +GWTPL +A
Sbjct: 75 ASDKSGWTPLHLA 87
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + + G ++PLH +A GH EIV +L++ G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQG--STPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N R+ G T L A +GH E+V L+ Y A+++ D G T LHLAA GH + +
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY-GLTPLHLAADRGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLH +A GH EIV +L++ G D+N ++ G T L A GH E+V L+ + A+++
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 113 ADYLNGGTALHLAALNGHSRCIRLL 137
D G TA ++ NG+ +L
Sbjct: 142 QDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + GST LH AA G+ + ++L+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAH---DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 235 AENANGWTPLMVA 247
A + +GWTPL +A
Sbjct: 75 ARDTDGWTPLHLA 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
GH E V++LL GA V+ + G T LH AA G+ + ++L+ GA + A++A G
Sbjct: 58 GHPEIVEVLLKHGADVN---ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGL 114
Query: 242 TPLMVA 247
TPL +A
Sbjct: 115 TPLHLA 120
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ Y +G +PLH +AA GH EIV +L+ +G D
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYG--RTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+V L+ Y A+++ D G T L+LAA GH + +
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD-ATGITPLYLAAYWGHLEIVEV 119
Query: 137 LL 138
LL
Sbjct: 120 LL 121
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
GH+E V++LL GA V+ +V G+T LH AA G+ + ++L+ GA + A++A G
Sbjct: 46 GHLEIVEVLLRNGADVN---AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI 102
Query: 242 TPLMVARSW 250
TPL +A W
Sbjct: 103 TPLYLAAYW 111
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA + Y G T LH AA G+ + ++L+ GA +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAY---DHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 235 AENANGWTPLMVARS 249
A + NG TPL +A S
Sbjct: 63 AVDTNGTTPLHLAAS 77
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 97/214 (45%), Gaps = 28/214 (13%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLH ++ GH IV L++ G N+ N + +T L A + GH EV L+ KA +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-N 74
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
A + T LH AA GH+ ++LLL + NA L + T
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLEN------NANPNLATTAGHTP------------ 116
Query: 173 EVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
LH+ GHVE+V LL+ AS + ++ G T LH AA G + ++L+ A
Sbjct: 117 ---LHIAAREGHVETVLALLEKEASQA---CMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Query: 232 SLTAENANGWTPLMVARSWHRTGLEDILSTQPEG 265
A NG TPL VA H L+ + P G
Sbjct: 171 HPNAAGKNGLTPLHVA--VHHNNLDIVKLLLPRG 202
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 112/246 (45%), Gaps = 27/246 (10%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AAR G + AK LL+ ++ + +PLH +A GH +V LL+E+ + NL
Sbjct: 54 AARAGHTEVAKYLLQNKAKV--NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYI 142
G T L A + GH E VL L+ +A+ G T LH+AA G R LLL
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLER-- 168
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
+ PNA + K G L V +H + +++ V+LLL G S S
Sbjct: 169 DAHPNA-------AGKNG--------LTPLHVAVH---HNNLDIVKLLLPRGGSPH---S 207
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL-MVARSWHRTGLEDILST 261
+ G T LH AA + + L+ G S AE+ G TPL + A+ H + +LS
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 262 QPEGRL 267
Q G L
Sbjct: 268 QANGNL 273
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 28/210 (13%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PLH +A Q E+ L++ G N + +G T L A Q GH E+V L+ +AN +
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDER--YF 170
+ +G T LHL A GH +L+ K G +++ R Y
Sbjct: 274 GNK-SGLTPLHLVAQEGHVPVADVLI-------------------KHGVMVDATTRMGYT 313
Query: 171 HLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMG 230
L V H G+++ V+ LL A V+ + G + LH AA G+ +L+ G
Sbjct: 314 PLHVASHY---GNIKLVKFLLQHQADVNAKTKL---GYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 231 ASLTAENANGWTPLMVARSWHRTGLEDILS 260
AS +++G TPL +A+ + D+L
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA+ ++ A++LL+Y S GV +PLH +A +GH E+V+LL+ + NL N
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGV--TPLHLAAQEGHAEMVALLLSKQANGNLGNK 276
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---A 139
G T L Q GH V LI + + + G T LH+A+ G+ + ++ LL A
Sbjct: 277 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM-GYTPLHVASHYGNIKLVKFLLQHQA 335
Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSE 199
D ++ L + + + GH + V LLL GAS +E
Sbjct: 336 DVNAKTKLGYSPLHQAAQQ-----------------------GHTDIVTLLLKNGASPNE 372
Query: 200 YLSVSGAGSTSLHYAACGGNAQCCQIL 226
VS G+T L A G +L
Sbjct: 373 ---VSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A +GH EIV +L++ G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSG--KTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A +GH E+V L+ A+++ D G T LHLAA GH + +
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTY-GFTPLHLAADAGHLEIVEV 131
Query: 137 LLADYIPSVPNAWNRLRK 154
LL Y V NA ++ K
Sbjct: 132 LLK-YGADV-NAQDKFGK 147
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA G L+ + LL++ + G ++PLH +A GH EIV +L+++G D+N +
Sbjct: 54 AAIKGHLEIVEVLLKHGADVNAADKMG--DTPLHLAALYGHLEIVEVLLKNGADVNATDT 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A GH E+V L+ Y A+++ D G TA ++ NG+ +L
Sbjct: 112 YGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 176 LHLT-LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL + GH+E V++LL GA V+ + G T LH AA G+ + ++L+ GA +
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVN---AADKMGDTPLHLAALYGHLEIVEVLLKNGADVN 107
Query: 235 AENANGWTPLMVA 247
A + G+TPL +A
Sbjct: 108 ATDTYGFTPLHLA 120
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + +G T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN---AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 235 AENANGWTPLMVARSW 250
A + G TPL +A +
Sbjct: 75 AADKMGDTPLHLAALY 90
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G+ +PLH +A GH EIV +L++ G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGL--TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+V L+ + A+++ D G T LHLAA+ GH + +
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA G L+ + LL++ + G ++PLH +A GH EIV +L++ G D+N +
Sbjct: 54 AATYGHLEIVEVLLKHGADVNAIDIMG--STPLHLAALIGHLEIVEVLLKHGADVNAVDT 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A GH E+V L+ + A+++ D G TA ++ NG+ +L
Sbjct: 112 WGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 24/173 (13%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A + G + V L+ A+++ D +G T LHLAA GH + +LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVLL--------- 67
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
K +I HL L+ GH+E V++LL GA V+ +V G
Sbjct: 68 ------KHGADVNAIDIMGSTPLHLAALI-----GHLEIVEVLLKHGADVN---AVDTWG 113
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILS 260
T LH AA G+ + ++L+ GA + A++ G T ++ L +IL
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A+ GH EIV +L+++G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGY--TPLHLAASNGHLEIVEVLLKNGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+V L+ + A+++ D +G T LHLAA GH + +
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA +G L+ + LL+ + G+ +PLH +AA GH EIV +L++ G D+N +
Sbjct: 54 AASNGHLEIVEVLLKNGADVNASDLTGI--TPLHLAAATGHLEIVEVLLKHGADVNAYDN 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A ++GH E+V L+ + A+++ D G TA ++ NG+ +L
Sbjct: 112 DGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL NGH+E V++LL GA V+ + G T LH AA G+ + ++L+ GA +
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVN---ASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Query: 235 AENANGWTPLMVARSW 250
A + +G TPL +A +
Sbjct: 108 AYDNDGHTPLHLAAKY 123
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G + V++L+ GA V+ + G T LH AA G+ + ++L+ GA + A + G
Sbjct: 25 GQDDEVRILMANGADVN---ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI 81
Query: 242 TPLMVA 247
TPL +A
Sbjct: 82 TPLHLA 87
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G+ +PLH +A GH EIV +L++ G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGL--TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+V L+ + A+++ D G T LHLAA+ GH + +
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW-GDTPLHLAAIMGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA G L+ + LL++ + G ++PLH +A GH EIV +L++ G D+N +
Sbjct: 54 AATYGHLEIVEVLLKHGADVNAIDIXG--STPLHLAALIGHLEIVEVLLKHGADVNAVDT 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A GH E+V L+ + A+++ D G TA ++ NG+ +L
Sbjct: 112 WGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 24/173 (13%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A + G + V L+ A+++ D +G T LHLAA GH + +LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVLL--------- 67
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
K +I HL L+ GH+E V++LL GA V+ +V G
Sbjct: 68 ------KHGADVNAIDIXGSTPLHLAALI-----GHLEIVEVLLKHGADVN---AVDTWG 113
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILS 260
T LH AA G+ + ++L+ GA + A++ G T ++ L +IL
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A GH EIV +L+++G D
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGW--TPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N ++ G T L A GH E+V L+ A+++ A+ + G T LHLAA+ GH + +
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA +G L+ + LL+ + G+ +PL +A GH EIV +L+++G D+N +
Sbjct: 54 AAFNGHLEIVEVLLKNGADVNAVDHAGM--TPLRLAALFGHLEIVEVLLKNGADVNANDM 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A GH E+V L+ A+++ D G TA ++ NG+ +L
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 214 AACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
AA G +IL+A GA + AE+A+GWTPL +A
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLA 54
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + +G T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN---AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 235 AENANGWTPLMVA 247
A + G TPL +A
Sbjct: 75 AVDHAGMTPLRLA 87
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A GH EIV +L+++G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGW--TPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH EVV L+ A+++ D+ NG T LHLAA GH + +
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA G L+ + LL+ + + GV +PLH +A +GH E+V +L+++G D+N ++
Sbjct: 54 AAYFGHLEIVEVLLKNGADVNADDSLGV--TPLHLAADRGHLEVVEVLLKNGADVNANDH 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A GH E+V L+ + A+++ D G TA ++ NG+ +L
Sbjct: 112 NGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
GH+E V++LL GA V+ S+ G T LH AA G+ + ++L+ GA + A + NG+
Sbjct: 58 GHLEIVEVLLKNGADVNADDSL---GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF 114
Query: 242 TPLMVA 247
TPL +A
Sbjct: 115 TPLHLA 120
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G + V++L+ GA V+ V G T LH AA G+ + ++L+ GA + A+++ G
Sbjct: 25 GQDDEVRILMANGADVNASDHV---GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV 81
Query: 242 TPLMVA 247
TPL +A
Sbjct: 82 TPLHLA 87
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 214 AACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
AA G +IL+A GA + A + GWTPL +A
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLA 54
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A GH EIV +L+++G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNARDFTGW--TPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N ++ G T L A + GH E+V L+ A+++ +D +G T LHLAA GH + +
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA G L+ + LL+ + + GV +PLH +A +GH EIV +L+++G D+N +
Sbjct: 54 AAHFGHLEIVEVLLKNGADVNAKDSLGV--TPLHLAARRGHLEIVEVLLKNGADVNASDS 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A + GH E+V L+ A+++ D G TA ++ NG+ +L
Sbjct: 112 HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 176 LHLTLN-GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL + GH+E V++LL GA V+ S+ G T LH AA G+ + ++L+ GA +
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSL---GVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 235 AENANGWTPLMVA 247
A +++G+TPL +A
Sbjct: 108 ASDSHGFTPLHLA 120
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + G T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN---ARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 235 AENANGWTPL-MVARSWH 251
A+++ G TPL + AR H
Sbjct: 75 AKDSLGVTPLHLAARRGH 92
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A GH EIV +L+++G D
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+V L+ A+++ D NG T LHLAA GH + +
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDD-NGITPLHLAANRGHLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA G L+ + LL+ + Y T G ++PLH +A GH EIV +L+++G D+N ++
Sbjct: 54 AAYWGHLEIVEVLLKNGADVNAYDTLG--STPLHLAAHFGHLEIVEVLLKNGADVNAKDD 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A GH E+V L+ Y A+++ D G TA ++ NG+ +L
Sbjct: 112 NGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF-GKTAFDISINNGNEDLAEIL 165
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
GH+E V++LL GA V+ Y ++ GST LH AA G+ + ++L+ GA + A++ NG
Sbjct: 58 GHLEIVEVLLKNGADVNAYDTL---GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGI 114
Query: 242 TPLMVA 247
TPL +A
Sbjct: 115 TPLHLA 120
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 214 AACGGNAQCCQILIAMGASLTAENANGWTPLMVARSW 250
AA G +IL+A GA + A + GWTPL +A W
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYW 57
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + G T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN---AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 235 AENANGWTPLMVA 247
A + G TPL +A
Sbjct: 75 AYDTLGSTPLHLA 87
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ A R G E + L+ + GV +PLH +A +GH EIV +L++ G D
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGV--TPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N R+ G+T L A GH E+V L+ Y A+++ D G TA ++ NG+ +
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
L
Sbjct: 132 L 132
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL T G + V++L+ GA V+ ++ AG T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN---AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 235 AENANGWTPLMVA 247
A + G TPL +A
Sbjct: 75 ARDIWGRTPLHLA 87
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 32/143 (22%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPS 144
L++A + G + V L+ A+++ D G T LHLAA GH + +LL AD +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADV--N 74
Query: 145 VPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLN-GHVESVQLLLDLGASVSEYLSV 203
+ W R LHL GH+E V++LL+ GA V+ +
Sbjct: 75 ARDIWGR----------------------TPLHLAATVGHLEIVEVLLEYGADVN---AQ 109
Query: 204 SGAGSTSLHYAACGGNAQCCQIL 226
G T+ + GN +IL
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 18/211 (8%)
Query: 51 RNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANI 110
+ SPLH +A GH +I +L+++G +I+ + +T LM+A ++ H E V LI A +
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLLADYIPSV---------PNAWNRLRKKSNKTGS 161
D G T LHLAA GH ++ LL++ V P W K +
Sbjct: 71 DPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 162 IL----EFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAAC 216
+L + + R + LH +G V+ ++LL A+ + +V+ G + LH AA
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL---AAKCDLHAVNIHGDSPLHIAAR 186
Query: 217 GGNAQCCQILIAMGASLTAENANGWTPLMVA 247
C + ++ + +T +N G TPL A
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA-SL 233
L+ N H+E+V+ L+ GA V GST LH AA G+ + Q L++ G +
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPK---DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 234 TAENANGWTPLMVARSWHRTGLEDIL 259
++ GWTP++ A + L +L
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLL 130
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AA G E + L+ + G+ +PLH +AA G EIV +L+++G D
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGL--TPLHLAAANGQLEIVEVLLKNGAD 64
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+V L+ + A+++ D G T LHLAAL+G + +
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRA-GWTPLHLAALSGQLEIVEV 123
Query: 137 LL 138
LL
Sbjct: 124 LL 125
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA +G L+ + LL+ + + G+ +PLH +A GH EIV +L++ G D+N +
Sbjct: 46 AAANGQLEIVEVLLKNGADVNASDSAGI--TPLHLAAYDGHLEIVEVLLKHGADVNAYDR 103
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A G E+V L+ + A+++ D L G TA ++ G +L
Sbjct: 104 AGWTPLHLAALSGQLEIVEVLLKHGADVNAQDAL-GLTAFDISINQGQEDLAEIL 157
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL NG +E V++LL GA V+ + AG T LH AA G+ + ++L+ GA +
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVN---ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Query: 235 AENANGWTPLMVA 247
A + GWTPL +A
Sbjct: 100 AYDRAGWTPLHLA 112
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + G T LH AA G + ++L+ GA +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVN---ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 235 AENANGWTPLMVA 247
A ++ G TPL +A
Sbjct: 67 ASDSAGITPLHLA 79
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 65.1 bits (157), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ A R G E + L+ + GV +PLH +A +GH EIV +L++ G D
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGV--TPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G+T L A GH E+V L+ Y A+++ D G TA ++ NG+ +
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
L
Sbjct: 132 L 132
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL T G + V++L+ GA V+ ++ AG T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN---AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 235 AENANGWTPLMVA 247
A + G TPL +A
Sbjct: 75 ASDIWGRTPLHLA 87
Score = 35.0 bits (79), Expect = 0.071, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 32/143 (22%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPS 144
L++A + G + V L+ A+++ D G T LHLAA GH + +LL AD S
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 145 VPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLN-GHVESVQLLLDLGASVSEYLSV 203
+ W R LHL GH+E V++LL+ GA V+ +
Sbjct: 77 --DIWGR----------------------TPLHLAATVGHLEIVEVLLEYGADVN---AQ 109
Query: 204 SGAGSTSLHYAACGGNAQCCQIL 226
G T+ + GN +IL
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 64.7 bits (156), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ A R G E + L+ + GV +PLH +A +GH EIV +L++ G D
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGV--TPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G+T L A GH E+V L+ Y A+++ D G TA ++ NG+ +
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
L
Sbjct: 132 L 132
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL T G + V++L+ GA V+ ++ AG T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN---AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 235 AENANGWTPLMVA 247
A ++ G TPL +A
Sbjct: 75 ASDSWGRTPLHLA 87
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 32/143 (22%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL---ADYIPS 144
L++A + G + V L+ A+++ D G T LHLAA GH + +LL AD S
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 145 VPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLN-GHVESVQLLLDLGASVSEYLSV 203
++W R LHL GH+E V++LL+ GA V+ +
Sbjct: 77 --DSWGR----------------------TPLHLAATVGHLEIVEVLLEYGADVN---AQ 109
Query: 204 SGAGSTSLHYAACGGNAQCCQIL 226
G T+ + GN +IL
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
N+PLH +A GH E V L+ G D+N R+ G T L A ++GH E+V L+ A+++
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 112 RADYLNGGTALHLAALNGHSRCIRLLLA 139
A +G T HLA NGH ++LL A
Sbjct: 70 -ARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 58.5 bits (140), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 8 GNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIV 67
G+ +G L +AA++G +E K LL + S G N+PLH +A GH EIV
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIV 58
Query: 68 SLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
LL+ G D+N R+ G T A ++GH E+V L A+++
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
NGH E V+ LL GA V+ + S G+T LH AA G+A+ ++L+A GA + A + +G
Sbjct: 19 NGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
Query: 241 WTPLMVAR 248
TP +A+
Sbjct: 76 NTPEHLAK 83
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
G T L A ++GH E V L+ A+++ A +G T LHLAA NGH+ ++LLLA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 28/126 (22%)
Query: 117 NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL 176
+G T LH AA NGH+ ++ LL+ A R K T L
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSK------GADVNARSKDGNTP---------------L 46
Query: 177 HLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
HL NGH E V+LLL GA V+ + S G+T H A G+ + ++L A GA +
Sbjct: 47 HLAAKNGHAEIVKLLLAKGADVN---ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV-- 101
Query: 236 ENANGW 241
NA W
Sbjct: 102 -NARSW 106
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA++G + K LL + S G N+P H + GHHEIV LL G D+N R++
Sbjct: 49 AAKNGHAEIVKLLLAKGADVNARSKDG--NTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 204 SGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
S G+T LH AA G+A+ + L++ GA + A + +G TPL +A
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA 49
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 7 VGNSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEI 66
+G S G S + +L+ AA+ GD++ K L R G +++PLH++A +
Sbjct: 3 MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCR-DIEGRQSTPLHFAAGYNRVSV 61
Query: 67 VSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA 126
V L++ G D++ ++ G L AC +GH+EV L+ + A ++ AD L T LH AA
Sbjct: 62 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAA 120
Query: 127 LNGHSRCIRLLL 138
G +LLL
Sbjct: 121 AKGKYEICKLLL 132
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 182 GHVESVQLLLDLGA--SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN 239
GH E +LL+ GA +V++ T LH AA G + C++L+ GA T +N +
Sbjct: 90 GHYEVAELLVKHGAVVNVADLWKF-----TPLHEAAAKGKYEICKLLLQHGADPTKKNRD 144
Query: 240 GWTPLMVARSWHRTGLEDIL 259
G TPL + + T ++D+L
Sbjct: 145 GNTPLDLVKDG-DTDIQDLL 163
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTAL 88
+PLH +AA+G +EI LL++ G D +N G T L
Sbjct: 114 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 202 SVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSW 250
+ G ST LH+AA + L+ GA + A++ G PL A S+
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 89
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G +L+ AAR G E + L+ + G +PLH +A GH EIV +L++ G D
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGT--TPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
++ + G T L A GH E+V L+ A+++ D +G T LHLAA G+ + +
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDS-DGMTPLHLAAKWGYLEIVEV 131
Query: 137 LL 138
LL
Sbjct: 132 LL 133
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
AA G L+ + LL++ + FG +PLH +A GH EIV +L+++G D+N +
Sbjct: 54 AAYSGHLEIVEVLLKHGADVDASDVFGY--TPLHLAAYWGHLEIVEVLLKNGADVNAMDS 111
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
G T L A + G+ E+V L+ + A+++ D G TA ++ NG+ +L
Sbjct: 112 DGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 176 LHLT-LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL +GH+E V++LL GA V + G T LH AA G+ + ++L+ GA +
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADVD---ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 235 AENANGWTPLMVARSW 250
A +++G TPL +A W
Sbjct: 108 AMDSDGMTPLHLAAKW 123
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + G+T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN---AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 235 AENANGWTPLMVARSW 250
A + G+TPL +A W
Sbjct: 75 ASDVFGYTPLHLAAYW 90
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 40 PRLVRY-STFGVRNS----PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH 94
P L+++ + G RN+ PLH + QGH ++V L++S N ++ G T L+ AC
Sbjct: 103 PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG 162
Query: 95 GHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
GH E+V L+ + A+I+ ++ G TALH A + H + LLL
Sbjct: 163 GHHELVALLLQHGASINASNN-KGNTALHEAVIEKHVFVVELLL 205
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
A + G Q K LL+ N + + G N+PL Y+ + GHHE+V+LL++ G IN N
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSG--NTPLIYACSGGHHELVALLLQHGASINASNN 183
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIH 111
+G TAL +A H VV L+L+ A++
Sbjct: 184 KGNTALHEAVIEKHVFVVELLLLHGASVQ 212
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 41/161 (25%)
Query: 18 ERLVSAARDGDLQEAKALLEY--------------------------------NPRLVRY 45
E+L+ A DGDL+ + LLE+ RL +
Sbjct: 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKV 72
Query: 46 --STFGVR------NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHW 97
S GV +SPLH +A G +++ LL++ G + RN L ACQ GH+
Sbjct: 73 PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF 132
Query: 98 EVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
+VV L+ A ++ D L+G T L A GH + LLL
Sbjct: 133 QVVKCLLDSNAKPNKKD-LSGNTPLIYACSGGHHELVALLL 172
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 25/132 (18%)
Query: 117 NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLL 176
+G + LH+AAL+G + I LLL K G+ R V L
Sbjct: 85 DGSSPLHVAALHGRADLIPLLL---------------KHGANAGA------RNADQAVPL 123
Query: 177 HLT-LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
HL GH + V+ LLD A ++ +G+T L YA GG+ + +L+ GAS+ A
Sbjct: 124 HLACQQGHFQVVKCLLDSNAKPNKK---DLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 236 ENANGWTPLMVA 247
N G T L A
Sbjct: 181 SNNKGNTALHEA 192
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 10 SFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSL 69
+ G S + +L+ AA+ GD++ K L R G +++PLH++A +V
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCR-DIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 70 LIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNG 129
L++ G D++ ++ G L AC +GH+EV L+ + A ++ AD L T LH AA G
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAAAKG 119
Query: 130 HSRCIRLLL 138
+LLL
Sbjct: 120 KYEICKLLL 128
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
GH E +LL+ GA V+ T LH AA G + C++L+ GA T +N +G
Sbjct: 86 GHYEVAELLVKHGAVVN---VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142
Query: 242 TPLMVARSWHRTGLEDIL 259
TPL + + T ++D+L
Sbjct: 143 TPLDLVKDG-DTDIQDLL 159
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
PLH + + GH+E+ LL++ G +N+ + T L +A G +E+ L+ + A+ +
Sbjct: 78 PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137
Query: 114 DYLNGGTALHLAALNGHSRCIRLLLAD 140
+ +G T L L +G + LL D
Sbjct: 138 NR-DGNTPLDLVK-DGDTDIQDLLRGD 162
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTAL 88
+PLH +AA+G +EI LL++ G D +N G T L
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 202 SVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSW 250
+ G ST LH+AA + L+ GA + A++ G PL A S+
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 85
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G+ +PLH +A H EIV +L+++G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGL--TPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G+T L +GH E+V L+ + A+++ D G TA ++ NG+ +
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
L
Sbjct: 132 L 132
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 176 LHLT-LNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL +N H+E V++LL GA V+ ++ G T LH A G+ + ++L+ GA +
Sbjct: 51 LHLAAMNDHLEIVEVLLKNGADVN---AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 235 AENANGWTPLMVARSWHRTGLEDIL 259
A++ G T ++ L +IL
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A + G + V L+ A+++ D + G T LHLAA+N H + +LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKV-GLTPLHLAAMNDHLEIVEVLL--------- 67
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
K +I E HL + + GH+E V++LL GA V+ + G
Sbjct: 68 ------KNGADVNAIDAIGETPLHL-----VAMYGHLEIVEVLLKHGADVN---AQDKFG 113
Query: 208 STSLHYAACGGNAQCCQIL 226
T+ + GN +IL
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 35.0 bits (79), Expect = 0.086, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ V G T LH AA + + ++L+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKV---GLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 235 AENANGWTPL-MVARSWHRTGLEDIL 259
A +A G TPL +VA H +E +L
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLL 100
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G N+PLH +A H EIV +L++ G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKG--NTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+V L+ + A+++ D G TA ++ NG+ +
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
L
Sbjct: 132 L 132
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
+A G + V +L+ +G D+N + +G T L A + H E+V L+ + A+++ D +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN-D 79
Query: 118 GGTALHLAALNGHSRCIRLLL 138
G T LHLAAL GH + +LL
Sbjct: 80 GSTPLHLAALFGHLEIVEVLL 100
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 176 LHLTLN-GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL + H+E V++LL GA V+ + GST LH AA G+ + ++L+ GA +
Sbjct: 51 LHLAADYDHLEIVEVLLKHGADVNAH---DNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107
Query: 235 AENANGWTPLMVARSWHRTGLEDIL 259
A++ G T ++ L +IL
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.0 bits (79), Expect = 0.076, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + G+T LH AA + + ++L+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN---ANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 235 AENANGWTPLMVA 247
A + +G TPL +A
Sbjct: 75 AHDNDGSTPLHLA 87
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 55 LHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
LH ++ +G V L+++G D N++++ G T L +AC HGH +VV L+ +KA ++
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 115 YLNGGTALHLAALNGHSRCIRLLLA 139
Y N + LH AA NGH ++LLL+
Sbjct: 74 YQN-DSPLHDAAKNGHVDIVKLLLS 97
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 17 GERLVS-AARDGDLQEAKALLEY--NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIES 73
GE L+ A+ GD+ + LL+ +P + ++ + +PLH + GH ++V LL++
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW----TPLHEACNHGHLKVVELLLQH 65
Query: 74 GVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
+N Y+ + L A ++GH ++V L+ Y A
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 29/130 (22%)
Query: 118 GGTALHLAALNGHSRCIRLLLAD-YIPSVPN--AWNRLRKKSNKTGSILEFDERYFHLEV 174
G T LH+A++ G + LL + P+V + W L + N
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACN----------------- 52
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
+GH++ V+LLL A V+ + + LH AA G+ ++L++ GAS
Sbjct: 53 ------HGHLKVVELLLQHKALVN---TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Query: 235 AENANGWTPL 244
A N G P+
Sbjct: 104 AVNIFGLRPV 113
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 20 LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRN-SPLHYSAAQGHHEIVSLLIESGVDIN 78
L A G L+ + LL++ + +T G +N SPLH +A GH +IV LL+ G N
Sbjct: 47 LHEACNHGHLKVVELLLQHKALV---NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Query: 79 LRNYRG 84
N G
Sbjct: 104 AVNIFG 109
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 31/244 (12%)
Query: 24 ARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYR 83
A G L E K + + L + R + LH++ + GH EIV L++ GV +N ++
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA-LNGHSRCIRLLLADYI 142
G + L A G E+V L++ A+++ + NG T LH AA N H + LL
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
P + +D H G+++ V +LL AS +
Sbjct: 132 PDAKD----------------HYDATAMH-----RAAAKGNLKMVHILLFYKASTN---I 167
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
G+T LH A + + L+ GAS+ EN TPL VA+ GL IL
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG----GLGLILKRL 223
Query: 263 PEGR 266
EG
Sbjct: 224 AEGE 227
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G+ +PLH +A GH EIV +L++ G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGL--TPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+V L+ + A+++ D G TA ++ NG+ +
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
L
Sbjct: 132 L 132
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
+A G + V +L+ +G D+N + G T L A Q GH E+V L+ Y A+++ D
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF- 79
Query: 118 GGTALHLAALNGHSRCIRLLL 138
G T LHLAA+ GH + +LL
Sbjct: 80 GITPLHLAAIRGHLEIVEVLL 100
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ ++ G T LH AA G+ + ++L+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN---ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 235 AENANGWTPLMVA 247
AE+ G TPL +A
Sbjct: 75 AEDNFGITPLHLA 87
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 12 GCSASGERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLI 71
G S + +L+ AA+ GD++ K L R G +++PLH++A +V L+
Sbjct: 6 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCR-DIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 72 ESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHS 131
+ G D++ ++ G L AC +GH+EV L+ + A ++ AD L T LH AA G
Sbjct: 65 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKY 123
Query: 132 RCIRLLL 138
+LLL
Sbjct: 124 EICKLLL 130
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 182 GHVESVQLLLDLGA--SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENAN 239
GH E +LL+ GA +V++ T LH AA G + C++L+ GA T +N +
Sbjct: 88 GHYEVAELLVKHGAVVNVADLWKF-----TPLHEAAAKGKYEICKLLLQHGADPTKKNRD 142
Query: 240 GWTPLMVARSWHRTGLEDIL 259
G TPL + + T ++D+L
Sbjct: 143 GNTPLDLVKDG-DTDIQDLL 161
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
PLH + + GH+E+ LL++ G +N+ + T L +A G +E+ L+ + A+ +
Sbjct: 80 PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 139
Query: 114 DYLNGGTALHLAALNGHSRCIRLLLAD 140
+ +G T L L +G + LL D
Sbjct: 140 NR-DGNTPLDLVK-DGDTDIQDLLRGD 164
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTAL 88
+PLH +AA+G +EI LL++ G D +N G T L
Sbjct: 112 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G VE+V+ L + SV+ + G ST LH+AA + L+ GA +
Sbjct: 14 LLEAAKAGDVETVKKLCTV-QSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 71
Query: 235 AENANGWTPLMVARSW 250
A++ G PL A S+
Sbjct: 72 AKDKGGLVPLHNACSY 87
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 31/244 (12%)
Query: 24 ARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYR 83
A G L E K + + L + R + LH++ + GH EIV L++ GV +N ++
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA-LNGHSRCIRLLLADYI 142
G + L A G E+V L++ A+++ + NG T LH AA N H + LL
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
P + +D H G+++ V +LL AS +
Sbjct: 132 PDAKD----------------HYDATAMH-----RAAAKGNLKMVHILLFYKASTN---I 167
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
G+T LH A + + L+ GAS+ EN TPL VA+ GL IL
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG----GLGLILKRL 223
Query: 263 PEGR 266
EG
Sbjct: 224 AEGE 227
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 19/251 (7%)
Query: 18 ERLVSAARDGDLQEAKALLEYNPRLVR-YSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
+ L+ AAR G+ ++ ALL P V +++ G +++PLH +A IV LL++ G D
Sbjct: 26 DELLEAARSGNEEKLMALL--TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
++ ++ G L AC +GH+EV L+ + A ++ D L T LH AA L
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSL 142
Query: 137 LL---ADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDL 193
LL AD P++ N + T + E F LL + V+ L L
Sbjct: 143 LLSHGAD--PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 194 GASVSEYLSVSGAGS--TSLHYAACG---GNAQCCQILIAMGASLTAENANGWTPLMVAR 248
E ++ S T+LH A Q ++L+ GA++ +N + TPL VA
Sbjct: 201 -----EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA 255
Query: 249 SWHRTGLEDIL 259
+ ++L
Sbjct: 256 ERAHNDVMEVL 266
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKAN 109
+PLH +A + H++++ +L + G +N + GQTAL +A GH + L+ Y ++
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 31/243 (12%)
Query: 24 ARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYR 83
A G L+E K + + L + R + LH++ + GH EIV L++ GV +N ++
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDA 73
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA-LNGHSRCIRLLLADYI 142
G + L A G E+V L+ A ++ + NG T LH AA N H + LL
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
P + ++ + G+++ + +LL AS +
Sbjct: 133 PDAKD---------------------HYEATAMHRAAAKGNLKMIHILLYYKASTN---I 168
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
G+T LH A + ++L++ GAS+ EN TPL VA+ GL IL
Sbjct: 169 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG----GLGLILKRM 224
Query: 263 PEG 265
EG
Sbjct: 225 VEG 227
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 22 SAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN 81
SA RD + KALL ++ + G +PLHY+A++ HEI +L+E G + + ++
Sbjct: 83 SAGRD---EIVKALLGKGAQVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Query: 82 YRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA 125
+ TA+ +A G+ +++ L+ YKA+ + D G T LHLA
Sbjct: 138 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQD-TEGNTPLHLA 180
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 31/243 (12%)
Query: 24 ARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYR 83
A G L+E K + + L + R + LH++ + GH EIV L++ GV +N ++
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAA-LNGHSRCIRLLLADYI 142
G + L A G E+V L+ A ++ + NG T LH AA N H + LL
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 143 PSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLS 202
P + ++ + G+++ + +LL AS +
Sbjct: 132 PDAKD---------------------HYEATAMHRAAAKGNLKMIHILLYYKASTN---I 167
Query: 203 VSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQ 262
G+T LH A + ++L++ GAS+ EN TPL VA+ GL IL
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG----GLGLILKRM 223
Query: 263 PEG 265
EG
Sbjct: 224 VEG 226
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 22 SAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN 81
SA RD + KALL ++ + G +PLHY+A++ HEI +L+E G + + ++
Sbjct: 82 SAGRD---EIVKALLGKGAQVNAVNQNGC--TPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 82 YRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLA 125
+ TA+ +A G+ +++ L+ YKA+ + D G T LHLA
Sbjct: 137 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQD-TEGNTPLHLA 179
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 58.5 bits (140), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L + +G ++PLH +A GH EIV +L+++G D
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWG--HTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N G+T L A H E+V L+ + A+++ D G TA ++ NG+ +
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDNGNEDLAEI 131
Query: 137 L 137
L
Sbjct: 132 L 132
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
+A G + V +L +G D+N +Y G T L A GH E+V L+ A+++ A
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN-ATGNT 79
Query: 118 GGTALHLAALNGHSRCIRLLL 138
G T LHLAA H + +LL
Sbjct: 80 GRTPLHLAAWADHLEIVEVLL 100
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVS--EYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS 232
LL G + V++L GA V+ +Y G T LH AA G+ + ++L+ GA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYW-----GHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 233 LTAENANGWTPLMVARSW 250
+ A G TPL +A +W
Sbjct: 73 VNATGNTGRTPLHLA-AW 89
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 26/140 (18%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
L++A + G + V L A+++ DY G T LHLAA+ GH + +LL +
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYW-GHTPLHLAAMLGHLEIVEVLLKN------- 69
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGA 206
N TG+ LHL H+E V++LL GA V+ +
Sbjct: 70 -----GADVNATGNT---------GRTPLHLAAWADHLEIVEVLLKHGADVN---AQDKF 112
Query: 207 GSTSLHYAACGGNAQCCQIL 226
G T+ + GN +IL
Sbjct: 113 GKTAFDISIDNGNEDLAEIL 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 44 RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTL 103
R + V +PLH +A++GH IV +L++ G D+N ++ TAL A +H H EVV L
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 104 ILYKANIH 111
I Y A++H
Sbjct: 120 IKYGADVH 127
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ ++T + SPLH +A GH +L+ +GV
Sbjct: 3 GKKLLEAARAGQDDEVRILMANG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+ R +T L A GH +V L+ + A+++ D L TALH A + H + L
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVEL 118
Query: 137 LL 138
L+
Sbjct: 119 LI 120
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 176 LHLTLN-GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL GH + ++LL G S V T LH AA G+A ++L+ GA +
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVD---RTPLHMAASEGHANIVEVLLKHGADVN 94
Query: 235 AENANGWTPL 244
A++ T L
Sbjct: 95 AKDMLKMTAL 104
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHG 95
++ + LH++ H E+V LLI+ G D++ ++ +TA + +G
Sbjct: 99 LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA + G++ LH AA G+ ++L+ G S
Sbjct: 6 LLEAARAGQDDEVRILMANGAP----FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 235 AENANGWTPLMVARS 249
A TPL +A S
Sbjct: 62 ARTKVDRTPLHMAAS 76
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 58.2 bits (139), Expect = 9e-09, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + +G+ +PL+ + A GH EIV +L+++G D
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGL--TPLYLATAHGHLEIVEVLLKNGAD 72
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRL 136
+N + G T L A GH E+ L+ + A+++ D G TA ++ NG+ +
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF-GKTAFDISIGNGNEDLAEI 131
Query: 137 L 137
L
Sbjct: 132 L 132
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
+A G + V +L+ +G D+N ++ G T L A HGH E+V L+ A+++ D +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI- 79
Query: 118 GGTALHLAALNGHSRCIRLLL 138
G T LHLAA GH +LL
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLL 100
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 30/222 (13%)
Query: 52 NSPLHYSAAQGH----HEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYK 107
++PLH + QG+ H +V+L + G ++++ N QT L A VV L+
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 108 ANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNR-----------LRKKS 156
A+ D +G TA HLA + C+R LL P + R + +
Sbjct: 70 ASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 157 NKTGSILEFDERYFHLEV---------LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAG 207
+T +L ER ++ L+H N + VQLLL GA+V+ + +G
Sbjct: 129 QETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY---SG 183
Query: 208 STSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARS 249
S++LH A+ G + L+ GA + +N + TPLMVARS
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 30/194 (15%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
SPLH + GH V +L++ G +N T L AC G W+ V L+ + A++
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
L + +H AA GH C+ L+A G+I D + HL
Sbjct: 98 ESDL--ASPIHEAARRGHVECVNSLIA------------------YGGNI---DHKISHL 134
Query: 173 EVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTS-LHYAACGGNAQCCQILIAMG 230
L+L N V+ LL+ GA V++ G G S LH A + + +L+ G
Sbjct: 135 GTPLYLACENQQRACVKKLLESGADVNQ-----GKGQDSPLHAVARTASEELACLLMDFG 189
Query: 231 ASLTAENANGWTPL 244
A A+NA G P+
Sbjct: 190 ADTQAKNAEGKRPV 203
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 29/164 (17%)
Query: 86 TALMQACQHGHWEVVLTLIL--YKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIP 143
+ + +A HGH + LI + NI AD++ + LH A L GH C+++LL
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHV---SPLHEACLGGHLSCVKILL----- 56
Query: 144 SVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSV 203
K G+ + +H L + ++G + V LLL GASV +
Sbjct: 57 --------------KHGAQVNGVTADWHTP-LFNACVSGSWDCVNLLLQHGASVQPESDL 101
Query: 204 SGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
+ + +H AA G+ +C LIA G ++ + ++ TPL +A
Sbjct: 102 A----SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 141
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 179 TLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENA 238
++GH S++ L+ G +V+ ++ + LH A GG+ C +IL+ GA + A
Sbjct: 11 AIHGHQLSLRNLISQGWAVN---IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 67
Query: 239 NGWTPLM---VARSWHRTG--LEDILSTQPEGRL 267
+ TPL V+ SW L+ S QPE L
Sbjct: 68 DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL 101
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 62 GHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTA 121
G E V L+E G DIN N G TAL QAC + ++V L+ ANI++ D G
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-EGWIP 109
Query: 122 LHLAALNGHSRCIRLLLAD--YIPSVPNAWN-------------RLRKKSNKTGSILEF- 165
LH AA G+ L++ ++ +V + + L+ + N+ G +E
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 166 --DERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCC 223
+E L +GH+ V+ + +G T+LH AA G +
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRH--------------AKSGGTALHVAAAKGYTEVL 215
Query: 224 QILIAMGASLTAENANGWTPLMVARSWHR 252
++LI + ++ +GWTPL A W +
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGK 244
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 43 VRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLT 102
VR++ G + LH +AA+G+ E++ LLI++ D+N+++Y G T L A G E
Sbjct: 193 VRHAKSG--GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
Query: 103 LI 104
L+
Sbjct: 251 LV 252
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 174 VLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASL 233
V L +G E V LL+ GA ++ Y +V G T+LH A N + L+ GA++
Sbjct: 43 VFLAACSSGDTEEVLRLLERGADIN-YANVDGL--TALHQACIDDNVDMVKFLVENGANI 99
Query: 234 TAENANGWTPLMVARS 249
+ GW PL A S
Sbjct: 100 NQPDNEGWIPLHAAAS 115
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
G TAL A G+ EV+ LI + +++ DY +G T LH AA G R+L+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILV 252
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
SPLH + GH V +L++ G +N T L AC G W+ V L+ + A++
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHL 172
L + +H AA GH C+ L+A G+I D + HL
Sbjct: 154 ESDL--ASPIHEAARRGHVECVNSLIA------------------YGGNI---DHKISHL 190
Query: 173 EVLLHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTS-LHYAACGGNAQCCQILIAMG 230
L+L N V+ LL+ GA V++ G G S LH + + +L+ G
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQ-----GKGQDSPLHAVVRTASEELACLLMDFG 245
Query: 231 ASLTAENANGWTPL 244
A A+NA G P+
Sbjct: 246 ADTQAKNAEGKRPV 259
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 34/206 (16%)
Query: 86 TALMQACQHGHWEVVLTLIL--YKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIP 143
+ + +A HGH + LI + NI AD++ + LH A L GH C+++LL
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHV---SPLHEACLGGHLSCVKILL----- 112
Query: 144 SVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSV 203
K G+ + +H L + ++G + V LLL GASV +
Sbjct: 113 --------------KHGAQVNGVTADWHTP-LFNACVSGSWDCVNLLLQHGASVQPESDL 157
Query: 204 SGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA-RSWHRTGLEDILSTQ 262
+ + +H AA G+ +C LIA G ++ + ++ TPL +A + R ++ +L
Sbjct: 158 A----SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL--- 210
Query: 263 PEGRLEVLPSPYLALPLMSIVKIARE 288
E +V PL ++V+ A E
Sbjct: 211 -ESGADVNQGKGQDSPLHAVVRTASE 235
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 28/256 (10%)
Query: 13 CSASGER--------LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHH 64
S+SG R L+ A ++ D+ + LLE V + +PLH +
Sbjct: 14 TSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSRE 72
Query: 65 EIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHL 124
+IV LL+ G D LR G T + A G +++ + A+++ D+ G TA
Sbjct: 73 DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFY-GFTAFME 131
Query: 125 AALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHV 184
AA+ G + ++ L A LR+K+ + L R L+ GHV
Sbjct: 132 AAVYGKVKALKFLYK------RGANVNLRRKTKEDQERL----RKGGATALMDAAEKGHV 181
Query: 185 ESVQLLLD-LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQ----ILIAMGASLTAENAN 239
E +++LLD +GA V+ + G +L +A + + +L+ GA +
Sbjct: 182 EVLKILLDEMGADVN---ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 238
Query: 240 GWTPLMVARSWHRTGL 255
G TPL++A GL
Sbjct: 239 GKTPLILAVEKKHLGL 254
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
SPLH++ +G +V +LI G IN+ N T L A HGH ++V L+ YKA+I+
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLAD 140
+ +G LH A G + L+A+
Sbjct: 101 VNE-HGNVPLHYACFWGQDQVAEDLVAN 127
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI 104
++PLH +A+ GH +IV L++ DIN N G L AC G +V L+
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL +GH + VQ LL A ++ +V+ G+ LHYA G Q + L+A GA ++
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADIN---AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
Query: 235 AENANGWTPLMVARS 249
N G P+ A++
Sbjct: 133 ICNKYGEMPVDKAKA 147
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 76 DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGG--TALHLAALNGHSRC 133
D+N + G + L AC+ G VV LI+ A R + +N G T LHLAA +GH
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA---RINVMNRGDDTPLHLAASHGHRDI 87
Query: 134 IRLLL 138
++ LL
Sbjct: 88 VQKLL 92
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G V++L+ GA ++ ++ T LH AA G+ Q L+ A + A N +G
Sbjct: 50 GRSAVVEMLIMRGARIN---VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
Query: 242 TPLMVARSWHRTGL-EDILSTQPEGRLEVLPSPYLALPLMSIVKIARE 288
PL A W + + ED+++ G L + + Y +P+ RE
Sbjct: 107 VPLHYACFWGQDQVAEDLVAN---GALVSICNKYGEMPVDKAKAPLRE 151
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G+ +V+L LD + ++ G + LH+A G + ++LI GA + N
Sbjct: 16 GNAVAVRLWLD--NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 73
Query: 242 TPLMVARS-WHRTGLEDILSTQPE 264
TPL +A S HR ++ +L + +
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKAD 97
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 20/241 (8%)
Query: 20 LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
L+ A ++ D+ + LLE V + +PLH + +IV LL+ G D L
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 80 RNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLA 139
R G T + A G +++ + A+++ D+ G TA AA+ G + ++ L
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY-GFTAFMEAAVYGKVKALKFLYK 126
Query: 140 DYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLD-LGASVS 198
A LR+K+ + L R L+ GHVE +++LLD +GA V+
Sbjct: 127 ------RGANVNLRRKTKEDQERL----RKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 199 EYLSVSGAGSTSLHYAACGGNAQCCQ----ILIAMGASLTAENANGWTPLMVARSWHRTG 254
+ G +L +A + + +L+ GA + G TPL++A G
Sbjct: 177 ---ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233
Query: 255 L 255
L
Sbjct: 234 L 234
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
SPLH++ +G +V +LI G IN+ N T L A HGH ++V L+ YKA+I+
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLAD 140
+ +G LH A G + L+A+
Sbjct: 96 VNE-HGNVPLHYACFWGQDQVAEDLVAN 122
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI 104
++PLH +A+ GH +IV L++ DIN N G L AC G +V L+
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 176 LHLTL-NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LHL +GH + VQ LL A ++ +V+ G+ LHYA G Q + L+A GA ++
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADIN---AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
Query: 235 AENANGWTPLMVARS 249
N G P+ A++
Sbjct: 128 ICNKYGEMPVDKAKA 142
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 76 DINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGG--TALHLAALNGHSRC 133
D+N + G + L AC+ G VV LI+ A R + +N G T LHLAA +GH
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA---RINVMNRGDDTPLHLAASHGHRDI 82
Query: 134 IRLLL 138
++ LL
Sbjct: 83 VQKLL 87
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G V++L+ GA ++ ++ T LH AA G+ Q L+ A + A N +G
Sbjct: 45 GRSAVVEMLIMRGARIN---VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
Query: 242 TPLMVARSWHRTGL-EDILSTQPEGRLEVLPSPYLALPLMSIVKIARE 288
PL A W + + ED+++ G L + + Y +P+ RE
Sbjct: 102 VPLHYACFWGQDQVAEDLVAN---GALVSICNKYGEMPVDKAKAPLRE 146
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G+ +V+L LD + ++ G + LH+A G + ++LI GA + N
Sbjct: 11 GNAVAVRLWLD--NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 68
Query: 242 TPLMVARS-WHRTGLEDILSTQPE 264
TPL +A S HR ++ +L + +
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKAD 92
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PL ++AA G +V L+++G D L ++AL AC G+ ++V L+ +++
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL 138
D+ NGGT L A H +C+++LL
Sbjct: 98 YDW-NGGTPLLYAVHGNHVKCVKMLL 122
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G+ + V++LLD G V+EY G T L YA G + +C ++L+ GA T E +G+
Sbjct: 80 GYTDIVKMLLDCGVDVNEY---DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 136
Query: 242 TPLMVA 247
+ +A
Sbjct: 137 NSMDLA 142
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 49 GVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
G + +H AAQG ++ IE IN + G T LM A HG VV L+ A
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 109 NIHRADYLNGG--TALHLAALNGHSRCIRLLLADYIPSVPNAWN 150
+ L G +AL LA G++ +++LL + WN
Sbjct: 61 D---PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 101
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PL ++AA G +V L+++G D L ++AL AC G+ ++V L+ +++
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL 138
D+ NGGT L A H +C+++LL
Sbjct: 96 YDW-NGGTPLLYAVHGNHVKCVKMLL 120
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G+ + V++LLD G V+EY G T L YA G + +C ++L+ GA T E +G+
Sbjct: 78 GYTDIVKMLLDCGVDVNEY---DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 134
Query: 242 TPLMVA 247
+ +A
Sbjct: 135 NSMDLA 140
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 55 LHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
+H AAQG ++ IE IN + G T LM A HG VV L+ A+
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD---PQ 61
Query: 115 YLNGG--TALHLAALNGHSRCIRLLLADYIPSVPNAWN 150
L G +AL LA G++ +++LL + WN
Sbjct: 62 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 99
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PL ++AA G +V L+++G D L ++AL AC G+ ++V L+ +++
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL 138
D+ NGGT L A H +C+++LL
Sbjct: 114 YDW-NGGTPLLYAVHGNHVKCVKMLL 138
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G+ + V++LLD G V+EY G T L YA G + +C ++L+ GA T E +G+
Sbjct: 96 GYTDIVKMLLDCGVDVNEY---DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 152
Query: 242 TPLMVA 247
+ +A
Sbjct: 153 NSMDLA 158
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 49 GVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
G + +H AAQG ++ IE IN + G T LM A HG VV L+ A
Sbjct: 17 GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 76
Query: 109 NIHRADYLNGG--TALHLAALNGHSRCIRLLLADYIPSVPNAWN 150
+ L G +AL LA G++ +++LL + WN
Sbjct: 77 D---PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 117
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G ++PLH +A GH E+V LL+E+G D
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 64
Query: 77 INLRNYRGQTALMQACQHGH 96
+N ++ G+TA + +G+
Sbjct: 65 VNAQDKFGKTAFDISIDNGN 84
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
+A G + V +L+ +G D+ ++ G T L A ++GH EVV L+ A+++ D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF- 71
Query: 118 GGTALHLAALNGHSRCIRLL 137
G TA ++ NG+ +L
Sbjct: 72 GKTAFDISIDNGNEDLAEIL 91
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
L++A + G + V L+ A++ D NG T LHLAA NGH ++LLL
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL 59
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + GST LH AA G+ + ++L+ GA +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 235 AENANGWTPLMVARSWHRTGLEDIL 259
A++ G T ++ L +IL
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PL +S G+ E+ L+E G ++N RN G+T L+ A ++G E+V L+ A+I
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
Query: 113 ADYLNGGTALHLAALNGHSRCIRLL 137
D L G TA A + G I++
Sbjct: 163 RD-LTGLTAEASARIFGRQEVIKIF 186
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 27/177 (15%)
Query: 79 LRNYR---GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIR 135
LRNYR +T LM AC G + L+ + D + G TAL A N R
Sbjct: 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD-IEGSTALIWAVKNN-----R 80
Query: 136 LLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGA 195
L +A+ + S + N + S KT L+ + G+ E LL+ GA
Sbjct: 81 LGIAEKLLSKGSNVN-TKDFSGKTP--------------LMWSIIFGYSEMSYFLLEHGA 125
Query: 196 SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHR 252
+V++ + G T L A+ G ++ + L+ +GA ++A + G T AR + R
Sbjct: 126 NVNDR---NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
N + + LL G++V+ + +G T L ++ G ++ L+ GA++ N G
Sbjct: 78 NNRLGIAEKLLSKGSNVN---TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
Query: 241 WTPLMVARSWHRT 253
TPL+VA + R+
Sbjct: 135 ETPLIVASKYGRS 147
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PL + G + L+E+ + ++ G TAL+ A ++ + L+ +N++
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLL 138
D+ +G T L + + G+S LL
Sbjct: 97 KDF-SGKTPLMWSIIFGYSEMSYFLL 121
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 24 ARDGD-------LQEAKALLEYNPRLVR----YSTF--GVRNSPLHYSAAQGHHEIVSLL 70
DGD + E KAL R V+ + F ++ +PLH + EI L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 71 IESGVDINLRNYRGQTALMQACQHGHWEV--VLTLILYKANIH---RADYLNGGTALHLA 125
+ +G D LR++RG T L AC+ G VLT ++H +A NG T LHLA
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 126 ALNGHSRCIRLLLA 139
+++G+ + LL++
Sbjct: 125 SIHGYLGIVELLVS 138
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLR------NYRGQTALMQACQHGHWEVVLTLIL 105
N+PLH + QG V +L +S +L NY G T L A HG+ +V L+
Sbjct: 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138
Query: 106 YKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
A+++ + NG TALHLA + + LLL
Sbjct: 139 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 18/133 (13%)
Query: 25 RDGD-------LQEAKALLEYNPRLVR----YSTF--GVRNSPLHYSAAQGHHEIVSLLI 71
DGD + E KAL R V+ + F ++ +PLH + EI L+
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 72 ESGVDINLRNYRGQTALMQACQHGHWEV--VLTLILYKANIH---RADYLNGGTALHLAA 126
+G D LR++RG T L AC+ G VLT ++H +A NG T LHLA+
Sbjct: 63 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 127 LNGHSRCIRLLLA 139
++G+ + LL++
Sbjct: 123 IHGYLGIVELLVS 135
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLR------NYRGQTALMQACQHGHWEVVLTLIL 105
N+PLH + QG V +L +S +L NY G T L A HG+ +V L+
Sbjct: 76 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 135
Query: 106 YKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
A+++ + NG TALHLA + + LLL
Sbjct: 136 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G +PLH +A +GH EIV +L+++G D
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGAD 60
Query: 77 INLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
+N ++ G+TA + +G+ + L IL KA
Sbjct: 61 VNAQDKFGKTAFDISIDNGNED--LAEILQKA 90
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
+A G + V +L+ +G D+N ++ G T L A + GH E+V L+ A+++ D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF- 67
Query: 118 GGTALHLAALNGHSRCIRLL 137
G TA ++ NG+ +L
Sbjct: 68 GKTAFDISIDNGNEDLAEIL 87
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
L++A + G + V L+ A+++ D +G T LHLAA GH + +LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL 55
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVD 76
G++L+ AAR G E + L+ + G ++PLH +A GH E+V LL+E+G D
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 82
Query: 77 INLRNYRGQTALMQACQHGH 96
+ ++ G+TA + +G+
Sbjct: 83 VXAQDKFGKTAFDISIDNGN 102
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
+A G + V +L+ +G D+ ++ G T L A ++GH EVV L+ A++ D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF- 89
Query: 118 GGTALHLAALNGHSRCIRLL 137
G TA ++ NG+ +L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLL 138
L++A + G + V L+ A++ D NG T LHLAA NGH ++LLL
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL 77
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL G + V++L+ GA V+ + GST LH AA G+ + ++L+ GA +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 235 AENANGWTPLMVARSWHRTGLEDIL 259
A++ G T ++ L +IL
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY-KANI 110
++PLH +A +G+ + +++ V +N + G TAL AC GH ++V L +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLLA 139
++ + L G TALH AA G++ ++LLLA
Sbjct: 134 NQQNKL-GDTALHAAAWKGYADIVQLLLA 161
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 55/200 (27%)
Query: 50 VRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKAN 109
+ ++PLH++ QGH +V L++ G D +L + G + + A Q GH +V LI +
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 110 IHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERY 169
+ D NG T L AA HS
Sbjct: 135 VDMMDQ-NGMTPLMWAAYRTHS-------------------------------------- 155
Query: 170 FHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
V+ +LLL SV+ L +T+LH+A GN +L+
Sbjct: 156 --------------VDPTRLLLTFNVSVN--LGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Query: 230 GASLTAENANGWTPLMVARS 249
GA++ A+N G + L +A+
Sbjct: 200 GANVDAQNIKGESALDLAKQ 219
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
+++A Q+G +E L+ ++ + D N T LH AA+N R+ L Y S
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINN-----RIDLVKYYISKGA 66
Query: 148 AWNRLRKKSNKTGSILEFDERYFHLEVLLHL-TLNGHVESVQLLLDLGASVSEYLSVSGA 206
++L N T LH T GH+ V L+ GA S + G
Sbjct: 67 IVDQLGGDLNSTP---------------LHWATRQGHLSMVVQLMKYGADPS---LIDGE 108
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
G + +H AA G+ LIA G + + NG TPLM A
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 204 SGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRTGLEDILSTQP 263
+G GST+LHY NA+C ++L+ AS+ N +G TPL +A+ E++L+
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261
Query: 264 EGRL 267
GR
Sbjct: 262 SGRF 265
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
G L SAA GDL++ +LL+ N + + FG +A Q G+ EI L+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73 SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
G + +L++ G + A + G + + TL+ ++A+++ D G LHLAA GH R
Sbjct: 59 RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
+ L+
Sbjct: 118 VVEFLV 123
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA-NI 110
N+ +H +A G + + L+E D+N+ + G L A + GH VV L+ + A N+
Sbjct: 71 NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
++ G TA LA L G + + L+ A+ N
Sbjct: 131 GHRNH-KGDTACDLARLYGRNEVVSLMQANGAGGATN 166
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 168 RYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILI 227
++ L +LL +L G + VQ ++ V + + G T+LH A C G+ + + L+
Sbjct: 34 KFNPLALLLDSSLEGEFDLVQRII---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV 90
Query: 228 AMGASLTAENANGWTPLMVARS 249
G ++ A +++GWTPL A S
Sbjct: 91 QFGVNVNAADSDGWTPLHCAAS 112
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
S+ +G ++V +I D +L N G TAL A GH E+V L+ + N++ AD +
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-D 102
Query: 118 GGTALHLAA 126
G T LH AA
Sbjct: 103 GWTPLHCAA 111
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
GH E V+ L+ G +V+ + G T LH AA N Q C+ L+ GA++ A
Sbjct: 81 GHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 55 LHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
LH + GH EIV L++ GV++N + G T L A + +V L+ A +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Query: 115 YLNGGTALHL--AALNGHSRCIRLL 137
Y + TA G+++C + L
Sbjct: 134 YSDMQTAADKCEEMEEGYTQCSQFL 158
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 20 LVSAARDGDLQEAKALLEY--NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDI 77
L+ A+ G+++ + LLE+ +P ++ R S L ++ G+ +IV LL+E VDI
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKE----RESALSLASTGGYTDIVGLLLERDVDI 95
Query: 78 NLRNYRGQTALMQACQHGHWEVVLTLILYKANI-HRADYLNGGTALHLAALNGHSRC--- 133
N+ ++ G T L+ A + H + V L+ A++ AD +G T + LA G+ +
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD--SGYTPMDLAVALGYRKVQQV 153
Query: 134 -----IRLLLADYIPSVP 146
++L ++ +P+ P
Sbjct: 154 IENHILKLFQSNLVPADP 171
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PL +++A G E V L+E G D ++ ++AL A G+ ++V L+ +I+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLA 139
D+ NGGT L A H +C+ LLA
Sbjct: 98 YDW-NGGTPLLYAVRGNHVKCVEALLA 123
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G+ + V LLL+ ++ Y G T L YA G + +C + L+A GA LT E +G+
Sbjct: 80 GYTDIVGLLLERDVDINIY---DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY 136
Query: 242 TPLMVA 247
TP+ +A
Sbjct: 137 TPMDLA 142
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 166 DERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQI 225
DER F L+ + G +E+V+ LL+ GA ++ ++L A+ GG +
Sbjct: 33 DERGF--TPLIWASAFGEIETVRFLLEWGADPH---ILAKERESALSLASTGGYTDIVGL 87
Query: 226 LIAMGASLTAENANGWTPLMVA 247
L+ + + NG TPL+ A
Sbjct: 88 LLERDVDINIYDWNGGTPLLYA 109
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 33/153 (21%)
Query: 16 SGERLVSAARDGDLQEAKALL-----------EYNPRLVRYSTFG--------------- 49
+G+RL AA GD+QE + LL + ++ FG
Sbjct: 8 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 67
Query: 50 -VRN----SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI 104
V++ SP+H +A G + + +L+E G D+N+ + G + A Q GH VV + +
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFL 126
Query: 105 LYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
++++HR D G T L LA G + +L
Sbjct: 127 AAESDLHRRDA-RGLTPLELALQRGAQDLVDIL 158
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
G L SAA GDL++ +LL+ N + + FG +A Q G+ EI L+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73 SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
G + +L++ G + A + G + + TL+ ++A+++ D G LHLAA GH R
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
+ L+
Sbjct: 118 VVEFLV 123
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 39 NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWE 98
NP L + F V +H +A G + + L+E D+N+ + G L A + GH
Sbjct: 62 NPDLKDRTGFAV----IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 99 VVLTLILYKA-NIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
VV L+ + A N+ ++ G TA LA L G + + L+ A+ N
Sbjct: 118 VVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQANGAGGATN 166
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
L +LL +L G + VQ ++ V + + G T+LH A C G+ + + L+ G
Sbjct: 38 LALLLDSSLEGEFDLVQRII---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 232 SLTAENANGWTPLMVARS 249
++ A +++GWTPL A S
Sbjct: 95 NVNAADSDGWTPLHCAAS 112
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
S+ +G ++V +I D +L N G TAL A GH E+V L+ + N++ AD +
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-D 102
Query: 118 GGTALHLAA 126
G T LH AA
Sbjct: 103 GWTPLHCAA 111
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTA 235
GH E V+ L+ G +V+ + G T LH AA N Q C+ L+ GA++ A
Sbjct: 81 GHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 55 LHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
LH + GH EIV L++ GV++N + G T L A + +V L+ A +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Query: 115 YLNGGTALHL--AALNGHSRCIRLL 137
Y + TA G+++C + L
Sbjct: 134 YSDMQTAADKCEEMEEGYTQCSQFL 158
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 17/138 (12%)
Query: 20 LVSAARDGDLQEAKALLEY--NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDI 77
L+ A+ G+++ + LLE+ +P ++ R S L ++ G+ +IV LL+E VDI
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKE----RESALSLASTGGYTDIVGLLLERDVDI 95
Query: 78 NLRNYRGQTALMQACQHGHWEVVLTLILYKANI-HRADYLNGGTALHLAALNGHSRC--- 133
N+ ++ G T L+ A H + V L+ A++ AD +G T + LA G+ +
Sbjct: 96 NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD--SGYTPMDLAVALGYRKVQQV 153
Query: 134 -----IRLLLADYIPSVP 146
++L ++ +P+ P
Sbjct: 154 IENHILKLFQSNLVPADP 171
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PL +++A G E V L+E G D ++ ++AL A G+ ++V L+ +I+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLA 139
D+ NGGT L A H +C+ LLA
Sbjct: 98 YDW-NGGTPLLYAVHGNHVKCVEALLA 123
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 182 GHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGW 241
G+ + V LLL+ ++ Y G T L YA G + +C + L+A GA LT E +G+
Sbjct: 80 GYTDIVGLLLERDVDINIY---DWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGY 136
Query: 242 TPLMVA 247
TP+ +A
Sbjct: 137 TPMDLA 142
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 152 LRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSL 211
LRK N DER F L+ + G +E+V+ LL+ GA ++ ++L
Sbjct: 22 LRKGDNLVNKP---DERGF--TPLIWASAFGEIETVRFLLEWGADPH---ILAKERESAL 73
Query: 212 HYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
A+ GG +L+ + + NG TPL+ A
Sbjct: 74 SLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
G L SAA GDL++ +LL+ N + + FG +A Q G+ EI L+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73 SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
G + +L++ G + A + G + + TL+ ++A+++ D G LHLAA GH R
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
+ L+
Sbjct: 118 VVEFLV 123
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 39 NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWE 98
NP L + F V +H +A G + + L+E D+N+ + G L A + GH
Sbjct: 62 NPDLKDRTGFAV----IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 99 VVLTLILYKA-NIHRADYLNGGTALHLAALNGHSRCIRLLLAD 140
VV L+ + A N+ ++ G TA LA L G + + L+ A+
Sbjct: 118 VVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQAN 159
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 33/153 (21%)
Query: 16 SGERLVSAARDGDLQEAKALL-----------EYNPRLVRYSTFG--------------- 49
+G+RL AA GD+QE + LL + ++ FG
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61
Query: 50 -VRN----SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLI 104
V++ SP+H +A G + + +L+E G D+N+ + G + A Q GH VV + +
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFL 120
Query: 105 LYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
++++HR D G T L LA G + +L
Sbjct: 121 AAESDLHRRDA-RGLTPLELALQRGAQDLVDIL 152
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
G L SAA GDL++ +LL+ N + + FG +A Q G+ EI L+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73 SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
G + +L++ G + A + G + + TL+ ++A+++ D G LHLAA GH R
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
+ L+
Sbjct: 118 VVEFLV 123
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 39 NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWE 98
NP L + F V +H +A G + + L+E D+N+ + G L A + GH
Sbjct: 62 NPDLKDRTGFAV----IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 99 VVLTLILYKA-NIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
VV L+ + A N+ ++ G TA LA L G + + L+ A+ N
Sbjct: 118 VVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQANGAGGATN 166
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVV-LTLILYKANIH 111
+ L + + G ++V L+ D+N+++ G TALM AC+HGH E+ L L + +I
Sbjct: 185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS 244
Query: 112 RADYLNGGTALHLAALNGHSRCIRLL 137
D +G TAL +A G S +L
Sbjct: 245 LTDR-DGSTALMVALDAGQSEIASML 269
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 45/169 (26%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGV--------------------------DIN--LRNYR 83
N+ LHYS + + +V L++SGV DI L+ +R
Sbjct: 112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFR 171
Query: 84 -----------GQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
GQTALM A HG +VV L+ +A+++ D +G TAL A +GH
Sbjct: 172 LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKE 230
Query: 133 CIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLN 181
LLLA VP+ L + T ++ D + +L+ +N
Sbjct: 231 IAGLLLA-----VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 172 LEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGA 231
L +LL L G +E VQ + +++ + G T+LH A CG N LI GA
Sbjct: 22 LVLLLDAALTGELEVVQQAVK---EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78
Query: 232 SLTAENANGWTPLMVARS 249
++ + +++GWTPL A S
Sbjct: 79 NVNSPDSHGWTPLHCAAS 96
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 58 SAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLN 117
+A G E+V ++ D + N G TAL A ++ +V LI AN++ D +
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS-H 86
Query: 118 GGTALHLAA 126
G T LH AA
Sbjct: 87 GWTPLHCAA 95
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 20 LVSAARDGDLQEAKALLEYNPRLV-RYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDIN 78
L+ AA D ++ K +L+ V T G N+PL+ + EI LI+ G DIN
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEG--NTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 79 LRNYRGQTALMQACQHGHWEVVLTLILYKA---NIHRADYLNGGTALHLAALNGHSRCIR 135
L+N + + A G E++ ++ + N H GG AL AA GH ++
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR---YGGNALIPAAEKGHIDNVK 123
Query: 136 LLLAD 140
LLL D
Sbjct: 124 LLLED 128
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 9 NSFGCSASGERLVSAARDGDLQEAKALLEYNPRLVRY-STFGVRNSPLHYSA-------- 59
N +G +A L+ AA G + K LLE + + + FG Y+A
Sbjct: 103 NRYGGNA----LIPAAEKGHIDNVKLLLEDGREDIDFQNDFG-------YTALIEAVGLR 151
Query: 60 --AQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILY 106
Q + +IV LL+E+G D ++++ G+TA+ A Q G+ E+ L Y
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 17 GERLVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQ----GHHEIVSLLIE 72
G L SAA GDL++ +LL+ N + + FG +A Q G+ EI L+
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-------RTALQVMKLGNPEIARRLLL 58
Query: 73 SGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSR 132
G + +L++ G + A + G + + TL+ +A+++ D G LHLAA GH R
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLR 117
Query: 133 CIRLLL 138
+ L+
Sbjct: 118 VVEFLV 123
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 39 NPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWE 98
NP L + F V +H +A G + + L+E+ D+N+ + G L A + GH
Sbjct: 62 NPDLKDRTGFAV----IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 99 VVLTLILYKA-NIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPN 147
VV L+ + A N+ ++ G TA LA L G + + L+ A+ N
Sbjct: 118 VVEFLVKHTASNVGHRNH-KGDTACDLARLYGRNEVVSLMQANGAGGATN 166
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
A ++GDL E K + + R G + PLHY+A G EI+ L+ G DIN +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRK--PLHYAADCGQLEILEFLLLKGADINAPDK 66
Query: 83 RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGGTAL 122
T L+ A GH V L+L K +G TAL
Sbjct: 67 HHITPLLSAVYEGHVSCV-KLLLSKGADKTVKGPDGLTAL 105
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
NG ++ V+ + G V+ L G LHYAA G + + L+ GA + A + +
Sbjct: 12 NGDLDEVKDYVAKGEDVNRTLE---GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 241 WTPLMVA 247
TPL+ A
Sbjct: 69 ITPLLSA 75
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 23 AARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNY 82
A ++GDL E K + + R G + PLHY+A G EI+ L+ G DIN +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRK--PLHYAADCGQLEILEFLLLKGADINAPDK 71
Query: 83 RGQTALMQACQHGHWEVVLTLI 104
T L+ A GH V L+
Sbjct: 72 HHITPLLSAVYEGHVSCVKLLL 93
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
NG ++ V+ + G V+ L G LHYAA G + + L+ GA + A + +
Sbjct: 17 NGDLDEVKDYVAKGEDVNRTLE---GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 241 WTPLMVA 247
TPL+ A
Sbjct: 74 ITPLLSA 80
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 45/229 (19%)
Query: 40 PRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEV 99
P+L R + +H +A +G + V LIE+GV ++N G TAL AC+ G
Sbjct: 9 PKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG---- 64
Query: 100 VLTLILYKANIHRADYL-NGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNK 158
+ Y A++ L +G +HLA + + L+ +++
Sbjct: 65 CVDTAKYLASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGA-----------KERGQX 113
Query: 159 TGSIL-EFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACG 217
S+L E DER + + HV+ + G T+LH+
Sbjct: 114 PESLLNECDEREVN-------EIGSHVKHCK------------------GQTALHWCVGL 148
Query: 218 GNA--QCCQILIAMGASLTAENANGWTPLMVARSW-HRTGLEDILSTQP 263
G + +IL+ +GAS TA++ TPL A + +R L+ T P
Sbjct: 149 GPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 33/152 (21%)
Query: 17 GERLVSAARDGDLQEAKALL-----------EYNPRLVRYSTFG---------------- 49
G+RL AA GD+QE + LL + ++ FG
Sbjct: 11 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPN 70
Query: 50 VRN----SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLIL 105
V++ SP+H +A G + + +L+E G D+N + G + A + GH VV + +
Sbjct: 71 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV-SFLA 129
Query: 106 YKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
++++H D +G T L LA G + +L
Sbjct: 130 PESDLHHRDA-SGLTPLELARQRGAQNLMDIL 160
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
G ++++++L++ GA V+ ++ GS +H A G++ L A + L +A+G
Sbjct: 86 TGFLDTLKVLVEHGADVN---ALDSTGSLPIHLAIREGHSSVVSFL-APESDLHHRDASG 141
Query: 241 WTPLMVARSWHRTGLEDIL 259
TPL +AR L DIL
Sbjct: 142 LTPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 33/152 (21%)
Query: 17 GERLVSAARDGDLQEAKALL-----------EYNPRLVRYSTFG---------------- 49
G+RL AA GD+QE + LL + ++ FG
Sbjct: 9 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPN 68
Query: 50 VRN----SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLIL 105
V++ SP+H +A G + + +L+E G D+N + G + A + GH VV + +
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV-SFLA 127
Query: 106 YKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
++++H D +G T L LA G + +L
Sbjct: 128 PESDLHHRDA-SGLTPLELARQRGAQNLMDIL 158
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 181 NGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANG 240
G ++++++L++ GA V+ ++ GS +H A G++ L A + L +A+G
Sbjct: 84 TGFLDTLKVLVEHGADVN---ALDSTGSLPIHLAIREGHSSVVSFL-APESDLHHRDASG 139
Query: 241 WTPLMVARSWHRTGLEDIL 259
TPL +AR L DIL
Sbjct: 140 LTPLELARQRGAQNLMDIL 158
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 29 LQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLI-ESGVDINLRNYRGQTA 87
L E A ++Y+ + S + LHY+A + IV L+ E G + + ++ G+T
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 88 LMQACQHGHWEVVLTLILYKANIHRADYLNGGTALHLAALNGHSRCIRLL 137
+ A Q G EVV LI A++ D + TA LA N H + +
Sbjct: 317 IXLAAQEGRIEVVXYLIQQGASVEAVDATD-HTARQLAQANNHHNIVDIF 365
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQH---GHWEVVLTLILYKA 108
N+PL + +V+ L ++G D + N ++AL QA + G L K
Sbjct: 167 NTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKG 226
Query: 109 NIHRADYLNGGTALHLAALN-GHSR--CIRLLLADYIPSVPNAWNRLRKKSNKTGSILEF 165
+I D NG TAL + A N G + +LL+ K + G+ +
Sbjct: 227 DIEELD-RNGXTALXIVAHNEGRDQVASAKLLVEKGA------------KVDYDGAARKD 273
Query: 166 DERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQI 225
E+Y L + + V+ L +G S G T + AA G +
Sbjct: 274 SEKYKGRTALHYAAQVSNXPIVKYL--VGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXY 331
Query: 226 LIAMGASLTAENANGWTPLMVARSWHRTGLEDILST-QPE 264
LI GAS+ A +A T +A++ + + DI +PE
Sbjct: 332 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 173 EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA-GSTSLHYAACGGNAQCCQILIAMGA 231
E++LHL + ++ L+D +L A G+T+LHYAA C ++L+ A
Sbjct: 172 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 231
Query: 232 SLTAENANGWTPLMVARSWHRTGLEDILSTQPEG 265
+ N G T L +AR H E++L G
Sbjct: 232 LVGTVNEAGETALDIARKKHHKECEELLEQAQAG 265
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 173 EVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA-GSTSLHYAACGGNAQCCQILIAMGA 231
E++LHL + ++ L+D +L A G+T+LHYAA C ++L+ A
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250
Query: 232 SLTAENANGWTPLMVARSWHRTGLEDILSTQPEG 265
+ N G T L +AR H E++L G
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 81/233 (34%), Gaps = 62/233 (26%)
Query: 20 LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
L A + + + + LL P L+ R PLH+S + HEI S L+ ++NL
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 80 RNY---RGQTALMQACQHGHWEVVLTLILYKANIHRADYLNGG-TALHLAALNGHSRCIR 135
+Y G T AC G+ EVV +L N G T LHLA
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA---------- 114
Query: 136 LLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGA 195
V W E Q L++ GA
Sbjct: 115 ---------VGKKW----------------------------------FEVSQFLIENGA 131
Query: 196 SVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS-LTAENANGWTPLMVA 247
SV LH AA G+ + ++L +G S + ++ GWTPL A
Sbjct: 132 SVR---IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 85/234 (36%), Gaps = 64/234 (27%)
Query: 20 LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
L A + + + + LL P L+ R PLH+S + HEI S L+ ++NL
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 80 RNY---RGQTALMQACQHGHWEVVLTLIL--YKANIHRADYLNGGTALHLAALNGHSRCI 134
+Y G T AC G+ EVV +L K ++++ G T LHLA
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLA--------- 114
Query: 135 RLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLG 194
V W E Q L++ G
Sbjct: 115 ----------VGKKW----------------------------------FEVSQFLIENG 130
Query: 195 ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS-LTAENANGWTPLMVA 247
ASV LH AA G+ + ++L +G S + ++ GWTPL A
Sbjct: 131 ASVR---IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 85/234 (36%), Gaps = 64/234 (27%)
Query: 20 LVSAARDGDLQEAKALLEYNPRLVRYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINL 79
L A + + + + LL P L+ R PLH+S + HEI S L+ ++NL
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 80 RNY---RGQTALMQACQHGHWEVVLTLIL--YKANIHRADYLNGGTALHLAALNGHSRCI 134
+Y G T AC G+ EVV +L K ++++ G T LHLA
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLA--------- 114
Query: 135 RLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLG 194
V W E Q L++ G
Sbjct: 115 ----------VGKKW----------------------------------FEVSQFLIENG 130
Query: 195 ASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGAS-LTAENANGWTPLMVA 247
ASV LH AA G+ + ++L +G S + ++ GWTPL A
Sbjct: 131 ASVR---IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 82/199 (41%), Gaps = 26/199 (13%)
Query: 74 GVDINLRNYRGQTALMQA-CQHGHWE------------VVLTLILYKANIHRADYLNGGT 120
G+D+N+R G T LM A C G E V+ I A++H G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 121 ALHLAALNGHSRCI-RLLLADYIPSVPNAWNR------LRKKSNKTGSILEFDERYFHLE 173
ALHLAA S RLL A ++ + R + + IL R L+
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL-IRNRATDLD 119
Query: 174 VLLH-----LTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIA 228
+H L L + +L DL S ++ +V G ++LH+AA N +L+
Sbjct: 120 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 179
Query: 229 MGASLTAENANGWTPLMVA 247
GA+ +N TPL +A
Sbjct: 180 NGANKDMQNNREETPLFLA 198
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 87/223 (39%), Gaps = 33/223 (14%)
Query: 52 NSPLHYSAAQGHHEIVSLLI--ESGVD-INLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
++ LH + H + L+ +G + ++L+N GQTAL A G V L A
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 109 NIHRADYLNGGTALHLAALNGHSRCIRLLLA------------------DYIPSVPNAWN 150
+ A+ G TALHLA C +LL D P +A
Sbjct: 70 GVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 151 RLRKKSNKTGSILEFDERY-FHLE-------VLLHLT-LNGHVESVQLLLDLGASVSEYL 201
+ + N DE + LE LH+ ++ E V+LL D GA +++
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-- 186
Query: 202 SVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL 244
G T LH A A ++L+ GA TA G TPL
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 160 GSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA-GSTSLHYAACGG 218
G + E + HL V+ + H + LL A EYL + G T+LH AA G
Sbjct: 3 GYVTEDGDTALHLAVI-----HQHEPFLDFLLGFSAG-HEYLDLQNDLGQTALHLAAILG 56
Query: 219 NAQCCQILIAMGASLTAENANGWTPLMVA 247
A + L A GA + G T L +A
Sbjct: 57 EASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYR-GQTALMQACQHGHWEVVLTLILYKANI 110
++PLH + E+V LL ++G D+N G+T L A + VL L+L
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGAD 217
Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRL 152
A G T L A L + RLL A P + ++L
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL 259
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLN--GGTALHLAALNGHSRCIRLLLA 139
G TAL A H H + L+ + A D N G TALHLAA+ G + + L A
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 87/223 (39%), Gaps = 33/223 (14%)
Query: 52 NSPLHYSAAQGHHEIVSLLI--ESGVD-INLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
++ LH + H + L+ +G + ++L+N GQTAL A G V L A
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 109 NIHRADYLNGGTALHLAALNGHSRCIRLLLA------------------DYIPSVPNAWN 150
+ A+ G TALHLA C +LL D P +A
Sbjct: 70 GVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 151 RLRKKSNKTGSILEFDERY-FHLE-------VLLHLT-LNGHVESVQLLLDLGASVSEYL 201
+ + N DE + LE LH+ ++ E V+LL D GA +++
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-- 186
Query: 202 SVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPL 244
G T LH A A ++L+ GA TA G TPL
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 160 GSILEFDERYFHLEVLLHLTLNGHVESVQLLLDLGASVSEYLSVSGA-GSTSLHYAACGG 218
G + E + HL V+ + H + LL A EYL + G T+LH AA G
Sbjct: 3 GYVTEDGDTALHLAVI-----HQHEPFLDFLLGFSAG-HEYLDLQNDLGQTALHLAAILG 56
Query: 219 NAQCCQILIAMGASLTAENANGWTPLMVA 247
A + L A GA + G T L +A
Sbjct: 57 EASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYR-GQTALMQACQHGHWEVVLTLILYKANI 110
++PLH + E+V LL ++G D+N G+T L A + VL L+L
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGAD 217
Query: 111 HRADYLNGGTALHLAALNGHSRCIRLLLADYIPSVPNAWNRL 152
A G T L A L + RLL A P + ++L
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL 259
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 84 GQTALMQACQHGHWEVVLTLILYKANIHRADYLN--GGTALHLAALNGHSRCIRLLLA 139
G TAL A H H + L+ + A D N G TALHLAA+ G + + L A
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 35/152 (23%)
Query: 54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
PLH +A +IV +L+ SG+D + + +G TAL A G+ + V + K N
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFV--KKNWRLX 122
Query: 114 DYLNGG---TALHLAALNGHSRCIRLLLADYIPSVPNAWNRLRKKSNKTGSILEFDERYF 170
Y G + H LN S +++ ++ +P+ F
Sbjct: 123 FYGKTGWKTSFYHAVXLNDVS-----IVSYFLSEIPST---------------------F 156
Query: 171 HLEVLL---HLTL-NGHVESVQLLLDLGASVS 198
L +LL H+T+ NGHV+ LLLD S +
Sbjct: 157 DLAILLSCIHITIKNGHVDXXILLLDYXTSTN 188
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 187 VQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMV 246
V++LL G S++ G+T+L+YA GN Q ++ + L GW
Sbjct: 78 VKILLFSGLDDSQF---DDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSF- 133
Query: 247 ARSWHRTGLEDILSTQPEGRLEVLPSPYLALPLMSIVKIARECG 290
+H L D+ + L +PS + L+S + I + G
Sbjct: 134 ---YHAVXLNDV--SIVSYFLSEIPSTFDLAILLSCIHITIKNG 172
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 26/198 (13%)
Query: 75 VDINLRNYRGQTALMQA-CQHGHWE------------VVLTLILYKANIHRADYLNGGTA 121
+D+N+R G T LM A C G E V+ I A++H G TA
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATA 60
Query: 122 LHLAALNGHSRCI-RLLLADYIPSVPNAWNR------LRKKSNKTGSILEFDERYFHLEV 174
LHLAA S RLL A ++ + R + + IL R L+
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL-IRNRATDLDA 119
Query: 175 LLH-----LTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
+H L L + +L DL S ++ +V G ++LH+AA N +L+
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 230 GASLTAENANGWTPLMVA 247
GA+ +N TPL +A
Sbjct: 180 GANKDMQNNREETPLFLA 197
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+ LH +AA + L+E+ D N+++ G+T L A V LI +A
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 113 ADYLNGGTALHLAA 126
A +G T L LAA
Sbjct: 119 ARMHDGTTPLILAA 132
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 194 GASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWHRT 253
GAS+ +GA T+LH AA + + L+ A ++ G TPL A S
Sbjct: 46 GASLHNQTDRTGA--TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 254 GLEDIL----STQPEGRLEVLPSPYL 275
G+ IL +T + R+ +P +
Sbjct: 104 GVFQILIRNRATDLDARMHDGTTPLI 129
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL + G + V+LL + GA + ++ + G G T+LH AA + + L+ +GA +
Sbjct: 80 LLFVAGLGSDKCVRLLAEAGADL-DHRDMRG-GLTALHMAAGYVRPEVVEALVELGADIE 137
Query: 235 AENANGWTPLMVARSWHRTGLEDILSTQPEG 265
E+ G T L +AR +IL T P+G
Sbjct: 138 VEDERGLTALELAR--------EILKTTPKG 160
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTAL 88
+ LH +A E+V L+E G DI + + RG TAL
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
+P +A + + +S L+E D++ + G+TAL+ G + V L A++
Sbjct: 45 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Query: 112 RADYLNGGTALHLAA 126
D G TALH+AA
Sbjct: 104 HRDMRGGLTALHMAA 118
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 175 LLHLTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLT 234
LL + G + V+LL + GA + ++ + G G T+LH AA + + L+ +GA +
Sbjct: 81 LLFVAGLGSDKCVRLLAEAGADL-DHRDMRG-GLTALHMAAGYVRPEVVEALVELGADIE 138
Query: 235 AENANGWTPLMVARSWHRTGLEDILSTQPEG 265
E+ G T L +AR +IL T P+G
Sbjct: 139 VEDERGLTALELAR--------EILKTTPKG 161
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTAL 88
+ LH +A E+V L+E G DI + + RG TAL
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 52 NSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIH 111
+P +A + + +S L+E D++ + G+TAL+ G + V L A++
Sbjct: 46 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 112 RADYLNGGTALHLAA 126
D G TALH+AA
Sbjct: 105 HRDMRGGLTALHMAA 119
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 26/198 (13%)
Query: 75 VDINLRNYRGQTALMQA-CQHGHWE------------VVLTLILYKANIHRADYLNGGTA 121
+D+N+R G T LM A C G E V+ I A++H G TA
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 122 LHLAALNGHSRCI-RLLLADYIPSVPNAWNR------LRKKSNKTGSILEFDERYFHLEV 174
LHLAA S RLL A ++ + R + + IL R L+
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL-IRNRATDLDA 119
Query: 175 LLH-----LTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAM 229
+H L L + +L DL S ++ +V G ++LH+AA N +L+
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 230 GASLTAENANGWTPLMVA 247
GA+ +N TPL +A
Sbjct: 180 GANKDMQNNREETPLFLA 197
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 34.7 bits (78), Expect = 0.094, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 304 CVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVSFDKL 363
C +CLE + CDH FC C L L + KGP CPLC++ I
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQK------KGP---SQCPLCKNDITKRSLQ 74
Query: 364 PGTR 367
TR
Sbjct: 75 ESTR 78
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 178 LTLNGHVESVQLLLDLGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAEN 237
L + G VE DL + ++ + +G T+LH+AA N + IL+ A+ A++
Sbjct: 128 LAIEGMVE------DLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181
Query: 238 ANGWTPLMVA 247
TPL +A
Sbjct: 182 DKDETPLFLA 191
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 53 SPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHR 112
+PL +A +V LI + DIN + G+TAL A + E V L+++ AN
Sbjct: 120 TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA 179
Query: 113 ADYLNGGTALHLAALNGHSRCIRLLLADY 141
D + T L LAA G + LL ++
Sbjct: 180 QDDKD-ETPLFLAAREGSYEASKALLDNF 207
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
PLH++ GH + L ++ G D+ R+ G+ L A + + ++V L L K A
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA 330
Query: 114 DYLNGGTALHL 124
G +L
Sbjct: 331 AQGQAGDETYL 341
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
PLH++ GH + L ++ G D+ R+ G+ L A + + ++V L L K A
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA 330
Query: 114 DYLNGGTALHL 124
G +L
Sbjct: 331 AQGQAGDETYL 341
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRA 113
PLH++ GH + L ++ G D+ R+ G+ L A + + ++V L L K A
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA 330
Query: 114 DYLNGGTALHL 124
G +L
Sbjct: 331 AQGQAGDETYL 341
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 54 PLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTAL 88
PL ++A G EIV LLIE G DI ++ G T L
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 176 LHL-TLNGHVESVQLLLDLGASVSEYLSVS----------GAGSTSLHYAACGGNAQCCQ 224
LH+ +N +V V+ LL GASVS + S G L +AAC G+ + +
Sbjct: 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR 138
Query: 225 ILIAMGASLTAENANGWTPLMV 246
+LI GA + A+++ G T L +
Sbjct: 139 LLIEHGADIRAQDSLGNTVLHI 160
>pdb|3L3P|A Chain A, Crystal Structure Of The C-Terminal Domain Of Shigella
Type Iii Effector Ipah9.8, With A Novel Domain Swap
Length = 293
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 23/146 (15%)
Query: 149 WNRLRKK-----------SNKTGSILEFDERYFHLEVLLHLTLNG-----HVESVQLLLD 192
WN LRK N TG++L F LE+L + + V+ +++ L
Sbjct: 93 WNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLA 152
Query: 193 LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH- 251
++E L +S A Y G A + AM S W L WH
Sbjct: 153 FQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWG--PWHA 210
Query: 252 ---RTGLEDILSTQPEGRLEVLPSPY 274
RT D + E + E+L + Y
Sbjct: 211 VLKRTEA-DRWAQAEEQKYEMLENEY 235
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 49 GVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKA 108
G ++ L +AA+G E V L+E+G D N N G+ + Q G +V L+L+ A
Sbjct: 10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGA 68
Query: 109 NIHRADYLNGGTALHLAALNGHSRCIRLL-LADYIPSVPNAWNRL 152
+ AD +H AA G + +L A V +AW RL
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 304 CVVCLER-KCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS 359
C +CL+ K T+ K C H FC + C++ G+ CP CR +VS
Sbjct: 57 CPICLDMLKNTMTTKECLHRFC-----------ADCIITALRSGNKECPTCRKKLVS 102
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 18/119 (15%)
Query: 149 WNRLRKK-----------SNKTGSILEFDERYFHLEVLLHLTLNG-----HVESVQLLLD 192
WN LRK N TG++L F LE+L + + V+ +++ L
Sbjct: 371 WNNLRKTLLVHQASEGLFDNDTGALLSLGREXFRLEILEDIARDKVRTLHFVDEIEVYLA 430
Query: 193 LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH 251
++E L +S A Y G A + A S W L WH
Sbjct: 431 FQTXLAEKLQLSTAVKEXRFYGVSGVTANDLRTAEAXVRSREENEFTDWFSLWGP--WH 487
>pdb|3CKD|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Shigella
Type Iii Effector Ipah
pdb|3CKD|B Chain B, Crystal Structure Of The C-Terminal Domain Of The Shigella
Type Iii Effector Ipah
pdb|3CKD|C Chain C, Crystal Structure Of The C-Terminal Domain Of The Shigella
Type Iii Effector Ipah
Length = 312
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 51/146 (34%), Gaps = 23/146 (15%)
Query: 149 WNRLRKK-----------SNKTGSILEFDERYFHLEVLLHLTLNG-----HVESVQLLLD 192
WN LRK N TG++L F LE+L + + V+ +++ L
Sbjct: 113 WNNLRKTLLVHQASEGLFDNDTGALLSLGREXFRLEILEDIARDKVRTLHFVDEIEVYLA 172
Query: 193 LGASVSEYLSVSGAGSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVARSWH- 251
++E L +S A Y G A + A S W L WH
Sbjct: 173 FQTXLAEKLQLSTAVKEXRFYGVSGVTANDLRTAEAXVRSREENEFTDWFSLWG--PWHA 230
Query: 252 ---RTGLEDILSTQPEGRLEVLPSPY 274
RT D + E + E L + Y
Sbjct: 231 VLKRTEA-DRWAQAEEQKYEXLENEY 255
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 304 CVVCLER-KCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS 359
C +CL+ K T+ K C H FC + C++ G+ CP CR +VS
Sbjct: 56 CPICLDMLKNTMTTKECLHRFC-----------ADCIITALRSGNKECPTCRKKLVS 101
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 304 CVVCLER-KCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS 359
C +CL+ K T+ K C H FC + C++ G+ CP CR +VS
Sbjct: 37 CPICLDMLKNTMTTKECLHRFC-----------ADCIITALRSGNKECPTCRKKLVS 82
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 99 VVLTLILYKANIHRADYLNGGTALHLAALNGHSRCI-RLLLADYIPSVPNAWNR------ 151
V+ I A++H G TALHLAA S RLL A ++ + R
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 152 LRKKSNKTGSILEFDERYFHLEVLLH-----LTLNGHVESVQLLLDLGASVSEYLSVSGA 206
+ + IL R L+ +H L L + +L DL S ++ +V
Sbjct: 66 VSADAQGVFQIL-IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
G ++LH+AA N +L+ GA+ +N TPL +A
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 165
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 18/51 (35%)
Query: 301 PDPCVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCP 351
P C +C + C H FC CAL C + P G I P
Sbjct: 15 PFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNP 65
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 304 CVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS 359
C++C E C H FC+ C + + I CP+CR I S
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYC------------INEWMKRKIECPICRKDIKS 99
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 55 LHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQHGHWEVVLTLILYKANIHRAD 114
L +AA+G E V L+E+G + N N G+ + Q G V L+L+ A + AD
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 115 YLNGGTALHLAALNGHSRCIRLL-LADYIPSVPNAWNRL 152
+H AA G + +L A V +AW RL
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL 113
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 304 CVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS 359
C++C E C H FC+ C + + I CP+CR I S
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYC------------INEWMKRKIECPICRKDIKS 99
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 99 VVLTLILYKANIHRADYLNGGTALHLAALNGHSRCI-RLLLADYIPSVPNAWNR------ 151
V+ I A++H G TALHLAA S RLL A + + R
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 152 LRKKSNKTGSILEFDERYFHLEVLLH-----LTLNGHVESVQLLLDLGASVSEYLSVSGA 206
+ + IL R L+ +H L L + +L DL S ++ +V
Sbjct: 63 VSADAQGVFQIL-LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
Query: 207 GSTSLHYAACGGNAQCCQILIAMGASLTAENANGWTPLMVA 247
G ++LH+AA N +L+ GA+ +N TPL +A
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLA 162
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 304 CVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCR 354
C +CLE + C+H FC C +N + G CP+CR
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESN------RNTDGKGNCPVCR 66
>pdb|2ZT9|B Chain B, Crystal Structure Of The Cytochrome B6f Complex From
Nostoc Sp. Pcc 7120
pdb|4H44|B Chain B, 2.70 A Cytochrome B6f Complex Structure From Nostoc Pcc
7120
Length = 160
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 218 GNAQCCQILIAMGASLTAENANGW-TPLMVARSWHRTGLEDILSTQPEGRLEVL 270
G+ C L + ++T E AN + TPL + W+ + IL + P L VL
Sbjct: 46 GSFACIVALAVLDPAMTGEPANPFATPLEILPEWYLYPVFQILRSLPNKLLGVL 99
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 304 CVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGIVS 359
C++C E C H FC+ C + + I CP+CR I S
Sbjct: 67 CIICSEYFIEAVTLNCAHSFCSYC------------INEWMKRKIECPICRKDIKS 110
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 302 DPCVVCLERK---CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSI 348
+PCV+C R C V K C CA L N C V + PI I
Sbjct: 8 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 57
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 48 FGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRN-------------YRGQTALMQACQH 94
F +S LH + + + V LL+E+G D++LR Y G+ L A
Sbjct: 100 FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 159
Query: 95 GHWEVVLTLIL---YKANIHRADYLNGGTALH 123
W+VV L+ A++ D L G T LH
Sbjct: 160 KQWDVVTYLLENPHQPASLEATDSL-GNTVLH 190
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 28.5 bits (62), Expect = 8.2, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 302 DPCVVCLERK---CTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSI 348
+PCV+C R C V K C CA L N C V + PI I
Sbjct: 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 264 EGRLEVLPSPYLALPLMSIVKIARECGWRNSDSLSTCPDPCV 305
EG + V+P+ + IVK+ E GW S SL D CV
Sbjct: 80 EGVVGVMPNQNANI---HIVKVFNEAGWGYSSSLVAAIDTCV 118
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 28.1 bits (61), Expect = 9.3, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 304 CVVCLERKCTVAAKGCDHEFCTQCALYLCSTNSSCVVAKGPIGSIPCPLCRHGI 357
C +CL+ C H FC +C + T SC G CPLC+ +
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGET--SC-------GFFKCPLCKTSV 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,062,297
Number of Sequences: 62578
Number of extensions: 465372
Number of successful extensions: 1777
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 489
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)