Query 014697
Match_columns 420
No_of_seqs 154 out of 385
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 16:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 1.8E-25 6.2E-30 189.1 6.3 95 285-389 8-102 (105)
2 2roh_A RTBP1, telomere binding 99.9 2.1E-23 7.3E-28 180.6 8.0 95 284-388 25-119 (122)
3 2ckx_A NGTRF1, telomere bindin 99.9 1.8E-23 6.3E-28 169.9 5.8 81 291-381 1-81 (83)
4 2juh_A Telomere binding protei 99.9 1.7E-22 5.7E-27 174.8 7.8 95 284-388 11-105 (121)
5 1x58_A Hypothetical protein 49 99.7 5.8E-18 2E-22 132.3 6.7 55 287-343 5-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 4.7E-16 1.6E-20 120.2 6.7 55 288-344 9-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.5 4.5E-14 1.5E-18 109.1 7.6 59 285-345 5-63 (69)
8 1w0t_A Telomeric repeat bindin 99.5 4.1E-14 1.4E-18 104.3 6.6 52 289-342 1-52 (53)
9 1guu_A C-MYB, MYB proto-oncoge 99.2 3.7E-11 1.3E-15 87.7 6.0 49 290-342 3-51 (52)
10 2d9a_A B-MYB, MYB-related prot 99.1 1E-10 3.4E-15 87.8 6.7 52 288-343 6-57 (60)
11 1gvd_A MYB proto-oncogene prot 99.1 1.2E-10 4.2E-15 85.0 5.7 49 290-342 3-51 (52)
12 1x41_A Transcriptional adaptor 99.0 3.2E-10 1.1E-14 85.6 6.5 51 289-343 7-57 (60)
13 2dim_A Cell division cycle 5-l 99.0 4E-10 1.4E-14 87.0 6.2 52 289-344 8-59 (70)
14 2elk_A SPCC24B10.08C protein; 99.0 8.3E-10 2.8E-14 83.1 6.4 48 290-340 9-56 (58)
15 2yus_A SWI/SNF-related matrix- 98.9 2.4E-09 8.2E-14 85.9 6.4 52 283-339 11-62 (79)
16 2cu7_A KIAA1915 protein; nucle 98.8 6E-09 2E-13 81.1 6.4 50 289-343 8-57 (72)
17 2din_A Cell division cycle 5-l 98.8 6.9E-09 2.4E-13 79.2 5.8 50 289-344 8-57 (66)
18 2yum_A ZZZ3 protein, zinc fing 98.7 1.4E-08 4.7E-13 79.2 6.1 50 289-342 7-61 (75)
19 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.3E-08 4.6E-13 83.0 5.7 50 290-343 4-53 (105)
20 2k9n_A MYB24; R2R3 domain, DNA 98.7 2.6E-08 9E-13 82.1 6.0 49 291-343 2-50 (107)
21 3osg_A MYB21; transcription-DN 98.7 2.9E-08 1E-12 84.1 6.2 52 287-343 8-59 (126)
22 2llk_A Cyclin-D-binding MYB-li 98.6 3E-08 1E-12 79.0 5.5 48 289-342 22-69 (73)
23 1h8a_C AMV V-MYB, MYB transfor 98.6 4.1E-08 1.4E-12 83.0 6.2 50 289-342 26-75 (128)
24 3zqc_A MYB3; transcription-DNA 98.6 6.2E-08 2.1E-12 82.4 6.5 51 290-345 54-104 (131)
25 3osg_A MYB21; transcription-DN 98.6 6.1E-08 2.1E-12 82.1 5.8 55 289-348 61-115 (126)
26 1gv2_A C-MYB, MYB proto-oncoge 98.6 6.5E-08 2.2E-12 78.9 5.6 49 289-342 55-103 (105)
27 2k9n_A MYB24; R2R3 domain, DNA 98.5 1.1E-07 3.9E-12 78.3 6.3 49 289-342 52-100 (107)
28 3zqc_A MYB3; transcription-DNA 98.5 6E-08 2E-12 82.6 4.5 50 290-343 2-51 (131)
29 2cqr_A RSGI RUH-043, DNAJ homo 98.5 9.5E-08 3.3E-12 76.0 4.9 52 287-342 15-69 (73)
30 1h8a_C AMV V-MYB, MYB transfor 98.4 1.8E-07 6.2E-12 79.0 5.1 49 289-342 78-126 (128)
31 1h89_C C-MYB, MYB proto-oncoge 98.4 3.8E-07 1.3E-11 79.4 5.9 50 289-342 57-106 (159)
32 2ltp_A Nuclear receptor corepr 97.7 6.8E-08 2.3E-12 78.5 0.0 50 289-343 15-64 (89)
33 1h89_C C-MYB, MYB proto-oncoge 98.2 1.1E-06 3.7E-11 76.6 5.1 49 289-342 109-157 (159)
34 2cjj_A Radialis; plant develop 98.2 2.4E-06 8.3E-11 70.8 5.9 48 290-341 8-58 (93)
35 2eqr_A N-COR1, N-COR, nuclear 98.0 1.8E-05 6.3E-10 60.0 7.0 52 285-341 7-58 (61)
36 3hm5_A DNA methyltransferase 1 97.8 3.1E-05 1.1E-09 64.6 6.2 51 291-342 31-82 (93)
37 1ign_A Protein (RAP1); RAP1,ye 97.8 1.5E-05 5E-10 76.4 4.7 52 289-344 7-63 (246)
38 2cqq_A RSGI RUH-037, DNAJ homo 97.7 6.9E-05 2.4E-09 59.3 6.2 49 289-342 7-58 (72)
39 1wgx_A KIAA1903 protein; MYB D 97.3 0.00049 1.7E-08 55.1 6.2 50 290-343 8-60 (73)
40 2ebi_A DNA binding protein GT- 97.2 0.00011 3.7E-09 58.4 2.2 54 289-342 3-65 (86)
41 4b4c_A Chromodomain-helicase-D 97.2 0.00044 1.5E-08 62.0 6.1 53 290-342 134-196 (211)
42 2iw5_B Protein corest, REST co 97.2 0.0005 1.7E-08 65.6 6.2 51 287-342 130-180 (235)
43 4iej_A DNA methyltransferase 1 97.0 0.00096 3.3E-08 55.8 6.2 50 291-341 31-81 (93)
44 2crg_A Metastasis associated p 96.7 0.0053 1.8E-07 48.0 7.4 58 287-348 5-62 (70)
45 2yqk_A Arginine-glutamic acid 96.6 0.0057 1.9E-07 46.8 6.9 52 287-342 6-57 (63)
46 1fex_A TRF2-interacting telome 96.3 0.0042 1.4E-07 47.3 4.6 49 290-341 2-58 (59)
47 4b4c_A Chromodomain-helicase-D 96.3 0.0059 2E-07 54.7 6.4 54 287-342 4-59 (211)
48 1ofc_X ISWI protein; nuclear p 96.2 0.0029 9.8E-08 62.1 4.2 54 290-343 212-276 (304)
49 2xb0_X Chromo domain-containin 96.1 0.0028 9.6E-08 61.1 3.5 30 291-320 169-198 (270)
50 1irz_A ARR10-B; helix-turn-hel 95.4 0.041 1.4E-06 43.1 6.9 54 286-341 3-61 (64)
51 2y9y_A Imitation switch protei 95.2 0.014 4.9E-07 58.8 4.7 54 290-343 228-292 (374)
52 2xag_B REST corepressor 1; ami 95.2 0.024 8.1E-07 58.8 6.2 49 288-341 378-426 (482)
53 4eef_G F-HB80.4, designed hema 93.2 0.022 7.7E-07 46.0 0.9 43 290-336 20-65 (74)
54 4a69_C Nuclear receptor corepr 92.2 0.14 4.8E-06 42.1 4.3 50 286-340 39-88 (94)
55 2xb0_X Chromo domain-containin 90.5 0.4 1.4E-05 46.3 6.3 53 289-343 2-56 (270)
56 1ug2_A 2610100B20RIK gene prod 85.7 2.3 8E-05 35.8 7.1 53 286-342 29-83 (95)
57 1ign_A Protein (RAP1); RAP1,ye 77.6 3 0.0001 40.2 5.5 29 311-343 172-200 (246)
58 2lr8_A CAsp8-associated protei 77.6 0.56 1.9E-05 37.6 0.0 49 289-342 13-63 (70)
59 3ukx_C Bimax2 peptide; arm rep 56.3 5.8 0.0002 26.5 1.9 11 258-268 10-20 (28)
60 1ofc_X ISWI protein; nuclear p 47.8 18 0.00061 35.5 4.7 48 290-341 110-157 (304)
61 2xag_B REST corepressor 1; ami 40.5 5.9 0.0002 41.2 0.0 46 290-340 189-234 (482)
62 3ukw_C Bimax1 peptide; arm rep 37.6 11 0.00037 25.2 0.9 17 246-266 2-18 (28)
63 2q2k_A Hypothetical protein; p 35.2 8.2 0.00028 30.2 0.1 22 184-205 48-69 (70)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.91 E-value=1.8e-25 Score=189.05 Aligned_cols=95 Identities=26% Similarity=0.581 Sum_probs=82.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCCH
Q 014697 285 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPK 364 (420)
Q Consensus 285 krRK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~p~~~r~e~erK~~~~~iP~ 364 (420)
+.|+++++||.||+++|++||++||.|+|+.|+..+|..|.+||.||||||||||+|.+..+.+.+++ .++|+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg-------~~~P~ 80 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG-------EPVPQ 80 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTC-------CSCCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccC-------CCCCH
Confidence 46788999999999999999999999999999999988899999999999999999987765444332 35999
Q ss_pred HHHHHHHHhhhhCCCCCCcCCCccC
Q 014697 365 PVLCRIRELATIHPYPRVPYSKKCN 389 (420)
Q Consensus 365 ~lL~RVreLA~~hpyp~~~~~~~~~ 389 (420)
++|+||++ +|+||.+.+.|.-.
T Consensus 81 ~~l~rv~~---~~~~~~~~~~~~~~ 102 (105)
T 2aje_A 81 ELLNRVLN---AHGYWTQQQMQQLQ 102 (105)
T ss_dssp HHHHHHHH---HHHHHHHHTTTTSS
T ss_pred HHHHHHHH---HHHHHHHHHHHHHh
Confidence 99999999 78888888777544
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.88 E-value=2.1e-23 Score=180.59 Aligned_cols=95 Identities=28% Similarity=0.555 Sum_probs=81.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCC
Q 014697 284 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 363 (420)
Q Consensus 284 ~krRK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~p~~~r~e~erK~~~~~iP 363 (420)
..+||++++||.||+++|++||++||.|+|+.|+..+|..|.+||.+|||||||||+|.+.+..+.++. .++|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~-------~~~p 97 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRG-------APVP 97 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCC-------SSCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCC-------CCCC
Confidence 356788999999999999999999999999999999888889999999999999999977665443332 3589
Q ss_pred HHHHHHHHHhhhhCCCCCCcCCCcc
Q 014697 364 KPVLCRIRELATIHPYPRVPYSKKC 388 (420)
Q Consensus 364 ~~lL~RVreLA~~hpyp~~~~~~~~ 388 (420)
++++++|++ +|.||.+++++..
T Consensus 98 ~e~~~~v~~---~h~~~g~~~~~~~ 119 (122)
T 2roh_A 98 QELLDRVLA---AQAYWSVDSSGRI 119 (122)
T ss_dssp HHHHHHHHH---HHHHHHSSCSCCC
T ss_pred HHHHHHHHH---HHHHHhhHHhhhh
Confidence 999999998 7778888877754
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.88 E-value=1.8e-23 Score=169.92 Aligned_cols=81 Identities=30% Similarity=0.668 Sum_probs=70.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCCHHHHHHH
Q 014697 291 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPVLCRI 370 (420)
Q Consensus 291 r~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~p~~~r~e~erK~~~~~iP~~lL~RV 370 (420)
++||+||+++|++||++||.|+|++|++.+|..|.+||.+|||||||||+|.+.++.+.+++ .|+|+++++||
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~-------~~~p~~~~~rv 73 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVPQDLLDRV 73 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS-------SCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccC-------CCCCHHHHHHH
Confidence 58999999999999999999999999999887789999999999999999988775543332 46999999999
Q ss_pred HHhhhhCCCCC
Q 014697 371 RELATIHPYPR 381 (420)
Q Consensus 371 reLA~~hpyp~ 381 (420)
++ +|+||.
T Consensus 74 ~~---~~a~~~ 81 (83)
T 2ckx_A 74 LA---AHAYWS 81 (83)
T ss_dssp HH---HHHHHH
T ss_pred HH---HHHHHh
Confidence 99 566664
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.87 E-value=1.7e-22 Score=174.84 Aligned_cols=95 Identities=27% Similarity=0.585 Sum_probs=82.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCC
Q 014697 284 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 363 (420)
Q Consensus 284 ~krRK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~p~~~r~e~erK~~~~~iP 363 (420)
.+.++++++||.||+++|++||++||.|+|+.|+..++.+|.+||.+|||||||||++.+.++.+.++. .++|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg-------~~~p 83 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVP 83 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC-------SCCC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC-------CCCC
Confidence 356888999999999999999999999999999999988889999999999999999977774443332 3599
Q ss_pred HHHHHHHHHhhhhCCCCCCcCCCcc
Q 014697 364 KPVLCRIRELATIHPYPRVPYSKKC 388 (420)
Q Consensus 364 ~~lL~RVreLA~~hpyp~~~~~~~~ 388 (420)
++++++|++ +|.||.|+.++..
T Consensus 84 ~e~~~rv~~---~h~~~gn~~~~~~ 105 (121)
T 2juh_A 84 QDLLDRVLA---AHAYWSQQQGKQH 105 (121)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSC
T ss_pred HHHHHHHHH---HHHHHccchhccC
Confidence 999999998 7888888888853
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=5.8e-18 Score=132.26 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=50.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 287 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
-+.+++||+||+++|++||++||. +|++|+..|.. |.+||.||||||||||.|..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF-QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC-CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC-ccCcccchHHHHHHHHHhcc
Confidence 347889999999999999999999 99999999853 68999999999999999854
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.62 E-value=4.7e-16 Score=120.20 Aligned_cols=55 Identities=25% Similarity=0.622 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccc
Q 014697 288 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 344 (420)
Q Consensus 288 K~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 344 (420)
+++++||+||+++|+++|++||.++|+.|.+.++ |.+||++||+|||+||+|.+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhccCC
Confidence 3467899999999999999999999999999875 579999999999999999764
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.49 E-value=4.5e-14 Score=109.05 Aligned_cols=59 Identities=25% Similarity=0.598 Sum_probs=52.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcccc
Q 014697 285 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 345 (420)
Q Consensus 285 krRK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 345 (420)
..++++.+||.||+++|+++|++||.++|+.|...+. |.+||.+||+++|+|+++....
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcCCCCC
Confidence 3567789999999999999999999999999998764 4599999999999999998654
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.49 E-value=4.1e-14 Score=104.31 Aligned_cols=52 Identities=27% Similarity=0.637 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
++.+||+||+++|+++|++||.++|+.|...+. |.+||++||+++|+|++|+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 367899999999999999999999999999864 4589999999999999985
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.16 E-value=3.7e-11 Score=87.68 Aligned_cols=49 Identities=29% Similarity=0.557 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
+.+||.||++.|+++|++||.++|+.|...+ .+||..+|+++|.+++..
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL----PNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS----TTCCHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----CCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999764 589999999999999864
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=1e-10 Score=87.76 Aligned_cols=52 Identities=23% Similarity=0.423 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 288 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 288 K~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
.++.+||.||++.|+++|++||.++|+.|...+ .+||..+|+++|.++++..
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF----PNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC----SSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----cCCCHHHHHHHHHHHcCCc
Confidence 356789999999999999999999999999874 5899999999999999764
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.08 E-value=1.2e-10 Score=85.04 Aligned_cols=49 Identities=29% Similarity=0.591 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
+.+||.||++.|+++|++||.++|..|.... .+||..+|+++|.|+++.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHc----CCCCHHHHHHHHHHHcCc
Confidence 5689999999999999999998999999764 599999999999999864
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=3.2e-10 Score=85.62 Aligned_cols=51 Identities=20% Similarity=0.515 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
.+.+||+||++.|+++|++||.++|..|..... +||..||+++|.+++..+
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC----TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT----TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC----CCCHHHHHHHHHHHccCC
Confidence 467899999999999999999999999998874 899999999999998643
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4e-10 Score=86.97 Aligned_cols=52 Identities=21% Similarity=0.507 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 344 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 344 (420)
++.+||.+|++.|+++|++||.++|..|.... .+||..||+++|.|+++...
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS----TTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh----cCCCHHHHHHHHHHHcCCcc
Confidence 46789999999999999999999999999875 48999999999999997643
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.97 E-value=8.3e-10 Score=83.13 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhh
Q 014697 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 340 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 340 (420)
+.+||++|++.|+++|++||.++|+.|..... .+||..+|+++|.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999998763 2899999999999874
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.88 E-value=2.4e-09 Score=85.93 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=46.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHh
Q 014697 283 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 339 (420)
Q Consensus 283 ~~krRK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNL 339 (420)
.+..+..+.+||.+|++.|+++|++|| ++|..|.+... +||..||+.+|.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 344566688999999999999999999 89999998764 89999999999988
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.81 E-value=6e-09 Score=81.07 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
.+.+||.||++.|+++|++||. +|+.|...+ .+||..+||.+|.++++..
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~----~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLI----GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999 999999854 4899999999999998754
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=6.9e-09 Score=79.22 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 344 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 344 (420)
++.+||.||++.|++.|++||. +|..|.. +. +||..+|+++|.++++...
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~----gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II----GRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH----SSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc----CcCHHHHHHHHHHHhChHh
Confidence 4568999999999999999998 9999998 53 6999999999999997654
No 18
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.4e-08 Score=79.15 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC-----CChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGV-----GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~-----G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
.+.+||.||++.|+++|++||. ++|..|..... +||..||+++|.++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG----NRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 4568999999999999999996 79999998764 89999999999888864
No 19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.71 E-value=1.3e-08 Score=82.97 Aligned_cols=50 Identities=26% Similarity=0.566 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
+.+||+||++.|+++|++||.++|..|.... .+||..+|+++|+|++...
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNPE 53 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh----cCCCHHHHHHHHHhccCCc
Confidence 5689999999999999999999999998653 5999999999999988643
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.66 E-value=2.6e-08 Score=82.10 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 291 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 291 r~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
.+||+||++.|+++|++||.++|..|.... .+||+.+|+++|.|.+...
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLM----ITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHT----TTSCHHHHHHHHHHHSSSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhc----CCCCHHHHHHHHHHHHccc
Confidence 579999999999999999999999999765 4899999999999998754
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.65 E-value=2.9e-08 Score=84.12 Aligned_cols=52 Identities=27% Similarity=0.485 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 287 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
..++.+||+||++.|+++|++||. +|..|.... .+||..+|+++|+|.+...
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF----PNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC----TTCCHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHhhhcccc
Confidence 445778999999999999999998 999998654 5899999999999988643
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.64 E-value=3e-08 Score=78.97 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
++.+||+||++.|++.|++||. +|+.|.+. | +||..++|++|+.|.+.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~----l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIGAA----L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH----H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH----h-CCCHHHHHHHHHHHHHH
Confidence 4678999999999999999997 69999976 3 89999999999988764
No 23
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.62 E-value=4.1e-08 Score=82.96 Aligned_cols=50 Identities=30% Similarity=0.675 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
++.+||.||++.|+++|++||.++|..|.... .+||..+|+++|.|++..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL----KGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS----SSCCHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh----cCCcHHHHHHHHHHhccc
Confidence 45789999999999999999999999999764 599999999999998864
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.59 E-value=6.2e-08 Score=82.44 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcccc
Q 014697 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 345 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 345 (420)
+.+||.||++.|+++|.+||. +|+.|... |.+||..+||++|+++++....
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAKL----IPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTTT----STTCCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHHhh
Confidence 468999999999999999995 99999864 3699999999999999986544
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.57 E-value=6.1e-08 Score=82.14 Aligned_cols=55 Identities=24% Similarity=0.498 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccccccc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 348 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~p~~ 348 (420)
.+.+||.||++.|+++|++||. +|+.|... |.+||..+||++|++|++.-.+|..
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~~k~~~p~~ 115 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAKF----FPGRTDIHIKNRWVTISNKLGIPQT 115 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHHHHHHTTC---
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 3568999999999999999995 99999964 3699999999999999987555544
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.56 E-value=6.5e-08 Score=78.90 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
.+.+||.||++.|+.+|++||. +|+.|... |.+||..+||++|++++|.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999996 99999964 4699999999999999874
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.53 E-value=1.1e-07 Score=78.29 Aligned_cols=49 Identities=27% Similarity=0.624 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
.+.+||.||++.|+.+|.+||. +|+.|...+ .+||..+||++|++|++.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISKFL----KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhh
Confidence 3579999999999999999997 999999864 599999999999999975
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.52 E-value=6e-08 Score=82.56 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
+.+||.||++.|+.+|++||.++|..|.... .+||..||+++|+|.+...
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~ 51 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL----PNRSPKQCRERWFNHLDPA 51 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC----TTSCHHHHHHHHHHHTSTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH----CCCCHHHHHHHHhhccCcc
Confidence 3579999999999999999999999998643 5999999999999998653
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.50 E-value=9.5e-08 Score=75.98 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=45.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 287 RKNQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~---G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
+-...+||.+|+..|+.+|++||. .+|..|.... .+||..+|+.+|.+|++-
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v----pGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV----PSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC----SSSCHHHHHHHHHHHHSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHc
Confidence 445678999999999999999994 5899999765 489999999999999863
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.43 E-value=1.8e-07 Score=78.98 Aligned_cols=49 Identities=24% Similarity=0.587 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
++.+||.||++.|+++|++||. +|+.|...+ .+||..++|++|++++|.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLL----PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGGGS----TTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999996 999999643 599999999999999874
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.37 E-value=3.8e-07 Score=79.44 Aligned_cols=50 Identities=26% Similarity=0.546 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
.+.+||.||++.|+++|++||.++|..|.... .+||..+|+++|.|++..
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS----TTCCHHHHHHHHHHTTCT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHc----CCCCHHHHHHHHHHHhCc
Confidence 46789999999999999999998999998654 599999999999998864
No 32
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.66 E-value=6.8e-08 Score=78.47 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
.+.+||.+|++.|+++|++||. +|..|.... .+||..+||.+|.++++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l----~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV----GSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3568999999999999999998 899998754 5999999999999999754
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.21 E-value=1.1e-06 Score=76.57 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
.+.+||.+|++.|+++|++||. +|+.|.+. |.+||..+||.+|..|+|.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999997 99999974 4699999999999999874
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.16 E-value=2.4e-06 Score=70.76 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014697 290 QRMWTLSEVMKLIDGISQFG---VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG---~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
..+||.+|+..|+.++.+|| ..+|..|.... .+||..+++.+|.+|++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v----pGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV----EGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS----TTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHH
Confidence 45799999999999999998 45799999876 48999999999999974
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=1.8e-05 Score=60.00 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=45.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014697 285 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 285 krRK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
+.|+...+||++|.+.+++|+.+||. +|..|.... .+||..||...|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l----~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYL----ERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHC----TTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHHHhcC
Confidence 45677899999999999999999996 999998543 59999999999987665
No 36
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.79 E-value=3.1e-05 Score=64.56 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhC-CCCCCCChhhHHHHHHHhhhc
Q 014697 291 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 291 r~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f-~if~~RT~VDLKDKWRNLlK~ 342 (420)
.+||.||++.|++-+++||. +|..|.+.|. ..+..||-.|||++|..+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999998 9999999883 334689999999999988864
No 37
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.79 E-value=1.5e-05 Score=76.43 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCC-----hHHHHHHhCCCCCCCChhhHHHHHHHhhhccc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 344 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~-----Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 344 (420)
.+.+||+||++.|++.|++||..+ |+.|... +.+||.-++|++|+++++...
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhhc
Confidence 456899999999999999999853 9999964 469999999999999998654
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.68 E-value=6.9e-05 Score=59.32 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~---G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
....||.||...|.++|.+|+. .+|..|.... +||..|++.+|..|.+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-----gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-----GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-----TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-----CCCHHHHHHHHHHHHHh
Confidence 3568999999999999999994 5799999874 69999999999999876
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.25 E-value=0.00049 Score=55.10 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 290 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~---G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
...||.+|..+|..++..|+. ++|..|..... +||..+++.+|.-|.+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG----SRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT----TSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC----CCCHHHHHHHHHHHHhcc
Confidence 357999999999999999986 68999998764 799999999999997653
No 40
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.24 E-value=0.00011 Score=58.44 Aligned_cols=54 Identities=28% Similarity=0.449 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcC----CC-----ChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFG----VG-----KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG----~G-----~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
....||.+|+.+|+......- .+ .|..|.......=-.||+.+|++||.||.+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457799999999999987532 22 6999988742110179999999999999985
No 41
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.21 E-value=0.00044 Score=62.04 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhC---------CC-CCCCChhhHHHHHHHhhhc
Q 014697 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLF---------SS-SSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f---------~i-f~~RT~VDLKDKWRNLlK~ 342 (420)
...||.+|+..|+.||.+||.|+|..|+.+-. +. ...++++.|..|--.|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 45699999999999999999999999999731 11 2556788888887766663
No 42
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.16 E-value=0.0005 Score=65.58 Aligned_cols=51 Identities=18% Similarity=0.451 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 287 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
.+...+||.+|.+.+++|+.+||. +|..|.+.. ..||..++|.-|.+..|.
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~V----gTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHH----SSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999997 899999875 489999999999887753
No 43
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.05 E-value=0.00096 Score=55.81 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhC-CCCCCCChhhHHHHHHHhhh
Q 014697 291 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 291 r~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f-~if~~RT~VDLKDKWRNLlK 341 (420)
..||.||+..|.+-+++|+. +|-.|.+.|. ..+..||--|||++|-.+++
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999997 9999999983 34568999999999977765
No 44
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.69 E-value=0.0053 Score=47.98 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccccccc
Q 014697 287 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 348 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~p~~ 348 (420)
|+....||++|.+...+|+.+||. +|..|...+ +..||..||..-|....|.....++
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt~~y~q~ 62 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDF---LPWKSLTSIIEYYYMWKTTDRYVQQ 62 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTT---CSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCCHHHHHHHHHhhcCCchHHHH
Confidence 567889999999999999999999 899999743 3689999999988866665444333
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.0057 Score=46.76 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=43.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 287 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
+-....||++|.+...+|+.+||. +|..|.+.+ +..||..||..-|-...|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKEL---LPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHS---CTTSCHHHHHHHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCcHHHHHHHHhcccCC
Confidence 335678999999999999999999 899998754 3589999999877655543
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.33 E-value=0.0042 Score=47.34 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014697 290 QRMWTLSEVMKLIDGISQF--------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~Ky--------G~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
|.+||+||+.+|++-|.+| |.--|++|.... +..+|-..++|+|+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~---~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS---LTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC---SSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH---CCCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 545699998721 369999999999998664
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.33 E-value=0.0059 Score=54.70 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=43.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 287 RKNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG--~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
|.....||..|...|+.++.+|| .++|..|..+.. |..+|..++++=.+.+...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~--L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE--LVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT--CTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999 689999999864 6799999999877776654
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.23 E-value=0.0029 Score=62.10 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------CCC-CCCCChhhHHHHHHHhhhcc
Q 014697 290 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~---G~Wk~Il~~~-------f~i-f~~RT~VDLKDKWRNLlK~s 343 (420)
.+.||.+|+..|+-++.+||. |+|..|+... |+. |..||+++|..+-.+|+++-
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 458999999999999999999 9999998552 343 38999999999999999863
No 49
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.13 E-value=0.0028 Score=61.13 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh
Q 014697 291 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL 320 (420)
Q Consensus 291 r~WT~EEveaLv~GV~KyG~G~Wk~Il~~~ 320 (420)
-.|+.+|+..|+.||.+||.|+|..|+.+-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 459999999999999999999999999985
No 50
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.45 E-value=0.041 Score=43.12 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=44.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCC--hHHHHHHhCCCCCCCChhhHH---HHHHHhhh
Q 014697 286 RRKNQRMWTLSEVMKLIDGISQFGVGK--WTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 341 (420)
Q Consensus 286 rRK~rr~WT~EEveaLv~GV~KyG~G~--Wk~Il~~~f~if~~RT~VDLK---DKWRNLlK 341 (420)
.+|+|..||+|.-+..+++|+++|..+ |+.|++... ..+.|..++| .|||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999543 899998875 3688988888 66776654
No 51
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.24 E-value=0.014 Score=58.77 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------CCC-CCCCChhhHHHHHHHhhhcc
Q 014697 290 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~---G~Wk~Il~~~-------f~i-f~~RT~VDLKDKWRNLlK~s 343 (420)
.+.||.+|+..|+-+|.+||. |+|..|+... |+- |..||++.|..+-.+|+++-
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 457999999999999999999 9999998872 333 38999999999999999864
No 52
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.19 E-value=0.024 Score=58.80 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014697 288 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 288 K~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
+..-+||.+|.+.+++||.+||. +|..|..... .||..++|.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg----TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG----NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS----SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 45678999999999999999998 9999998864 8999999998876554
No 53
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=93.21 E-value=0.022 Score=46.01 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC---ChHHHHHHhCCCCCCCChhhHHHHH
Q 014697 290 QRMWTLSEVMKLIDGISQFGVG---KWTDIKRLLFSSSSHRTPIDLRDKW 336 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G---~Wk~Il~~~f~if~~RT~VDLKDKW 336 (420)
-..||.+|..+|..++.+|..+ +|..|.... .+||..+++..+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V----pGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV----KGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS----CSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc----CCCCHHHHHHHH
Confidence 4579999999999999999976 899998765 489999998655
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.20 E-value=0.14 Score=42.05 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=40.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhh
Q 014697 286 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 340 (420)
Q Consensus 286 rRK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 340 (420)
.|+....||++|.+.+.+++..||. +|..|... +.+||..+|-.=+-...
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~----l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASF----LERKTVAECVLYYYLTK 88 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHT----CTTCCHHHHHHHHHHHS
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHH----cCCCCHHHHHHHHhccc
Confidence 3467889999999999999999998 89999543 46999999986554433
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.49 E-value=0.4 Score=46.26 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 289 NQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG--~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
+++.||..|+..|++++.+|| .++|..|..+.. |..+...+|+.=+..|+..+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~--L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT--LPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS--SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999 589999998853 78999999998888777544
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=85.68 E-value=2.3 Score=35.78 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=46.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 286 RRKNQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 286 rRK~rr~WT~EEveaLv~GV~KyG~--G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
.-.+-.-||.+|+..++...++-|. -.|+.|.... .+|+.-++++|++.|++.
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L----~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL----GNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH----SSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHH----ccCCHHHHHHHHHHHHHH
Confidence 3446788999999999999999986 4799988776 489999999999999985
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=77.62 E-value=3 Score=40.17 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.5
Q ss_pred CChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014697 311 GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 311 G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
+.|++|.+.+ .+||.+..|||||.+++..
T Consensus 172 ~~fk~ia~~~----P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFAEEH----AAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHHHHT----TTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHC----CCCChhhHHHHHHHHHhhc
Confidence 3799998875 4999999999999998644
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=77.60 E-value=0.56 Score=37.63 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014697 289 NQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~--G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
.-..||.||+..++..+++-|. -.|+.|... + +||+-++++|++.|++.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~----L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK----L-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4567999999999999999986 357777643 4 89999999999999874
No 59
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=56.29 E-value=5.8 Score=26.46 Aligned_cols=11 Identities=36% Similarity=0.002 Sum_probs=8.4
Q ss_pred ccccCCCCCCC
Q 014697 258 LGFESDDDIFS 268 (420)
Q Consensus 258 ~~~EwDde~d~ 268 (420)
++-||||++|+
T Consensus 10 rkrewdddddp 20 (28)
T 3ukx_C 10 RKREWDDDDDP 20 (28)
T ss_dssp CCCCCCCSSSC
T ss_pred hhcccccCCCc
Confidence 67899997654
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=47.84 E-value=18 Score=35.52 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014697 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
--.||..+-.+++.|+.+||...|..|..... +.|..+++.=...+.+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~----~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE----GKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST----TCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc----CCCHHHHHHHHHHHHH
Confidence 44599999999999999999999999997663 7999999877666664
No 61
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=40.52 E-value=5.9 Score=41.24 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhh
Q 014697 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 340 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 340 (420)
...||.+|...+.+|+.+||. +|..|.+. +.+||.-+|-.-|....
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~~----lp~Ksv~e~V~yYY~WK 234 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQM----LPDKSIASLVKFYYSWK 234 (482)
T ss_dssp ---------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHHH----cCCCCHHHHHHHhcccc
Confidence 357999999999999999998 89999853 35788877765544333
No 62
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=37.58 E-value=11 Score=25.16 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=9.2
Q ss_pred cccCCCCCCCCcccccCCCCC
Q 014697 246 LRGGRLKKRSPILGFESDDDI 266 (420)
Q Consensus 246 ~R~~rm~kN~s~~~~EwDde~ 266 (420)
.|+.||++ +.+|||.+.
T Consensus 2 srrrrprk----rplewdede 18 (28)
T 3ukw_C 2 SRRRRPRK----RPLEWDEDE 18 (28)
T ss_dssp -----CCC----CCCCCCGGG
T ss_pred cccccccc----CCccccccc
Confidence 35667777 789998743
No 63
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=35.19 E-value=8.2 Score=30.24 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=17.0
Q ss_pred ccchhhhcccchhhhhhcccCC
Q 014697 184 LGTKVKRLRKPTKRYIEESSDL 205 (420)
Q Consensus 184 ~~~~~kR~rkptkryieE~S~~ 205 (420)
.+....-||.+.+|||||+-+.
T Consensus 48 rgtktahirealrryieeigen 69 (70)
T 2q2k_A 48 RGTKTAHIREALRRYIEEIGEN 69 (70)
T ss_dssp TTCHHHHHHHHHHHHHHHCC--
T ss_pred CccchHHHHHHHHHHHHHhccC
Confidence 3467788999999999998764
Done!