BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014700
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-phosphate Dehydrogenase
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With Nad
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With
2-Fluoro-6-Chloropurine
pdb|1M66|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Chloro-Purine
pdb|1M67|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Hydroxy-Purine
pdb|1N1E|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1E|B Chain B, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1G|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase With Inhibitor Bcp
Length = 366
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 168/294 (57%), Gaps = 12/294 (4%)
Query: 114 TWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173
T + AK ++L NK VV G G+FGTA+A ++ K ++ V+ + + + +NEK
Sbjct: 3 TKQHSAKDELL-YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEV--RLVNEKRE 59
Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEG-----ISDYVDPGLP 228
N + +L N+ T+D + A GA+ L +P QF F E I+ + +P
Sbjct: 60 NVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVP 119
Query: 229 FISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288
+ +KG+E +TL+ ++II + L +P L+GPSFA+E+ + T + +AS D +
Sbjct: 120 VLVCTKGIERSTLKFPAEIIGEFLPSPL--LSVLAGPSFAIEVATGVFTCVSIASADINV 177
Query: 289 ANAVQQLLAS--KHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346
A +Q+++++ + ++D G E+A A+KNVLAI +G+ G+ +G N+ AAL+ +G
Sbjct: 178 ARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRG 237
Query: 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDI 400
EIR L +G + + GL+G GD+ LTC LSRN TVG +LG G +++I
Sbjct: 238 LLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEI 291
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 149/268 (55%), Gaps = 11/268 (4%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
+ +LG GS+GTA+A +A K +++++ D + + N RY P PE + A
Sbjct: 32 IAILGAGSWGTALALVLARKGQKVRLWSYESDH--VDEMQAEGVNNRYLPNYPFPETLKA 89
Query: 190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISD---YVDPGLPFISLSKGLELNTLRMMSQ 246
D K +L G L +P S +F E I+ +D +KGL + R++ +
Sbjct: 90 YCDLKASLEGVTDILIVVP---SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHE 145
Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
++ L + P +SGPS A E+ LPTA+ +AS + + + + + L + R+ +
Sbjct: 146 VVATEL--GQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKN 203
Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366
D+ GVE+ G++KN+LAIA GI G+ LG+N+ AAL+ +G +E+ L + G K T+TG
Sbjct: 204 DDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTG 263
Query: 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSG 394
L+G GD++LTC N SRNR G+ LG G
Sbjct: 264 LAGLGDLVLTCTDNQSRNRRFGLALGEG 291
>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
Length = 335
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 151/280 (53%), Gaps = 15/280 (5%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
+ VLG GS+GT A + + V + R + IN H + Y E K+ V
Sbjct: 16 RFFVLGAGSWGTVFAQXLHENGEE--VILWARRKEIVDLINVSHTSP-YVEESKI--TVR 70
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
AT D + + D + A+PVQ+ L + V P ++LSKG+E+ T + +S+I+
Sbjct: 71 ATNDLEE-IKKEDILVIAIPVQYIREHLLRLP--VKPSX-VLNLSKGIEIKTGKRVSEIV 126
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
+ L P + LSGPS A E+ KLPTA+ +A ++ K +Q+ +++++ R+ T D
Sbjct: 127 EEILGCP---YAVLSGPSHAEEVAKKLPTAVTLAGENSK---ELQKRISTEYFRVYTCED 180
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
V GVEIAGALKNV+AIAAGI+ G +N+ AAL +G EI GA T GL+
Sbjct: 181 VVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGXFFGADQKTFXGLA 240
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
G GD+ +TC SRNR G + G +L S NQV+
Sbjct: 241 GIGDLXVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVV 280
>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate
Dehydrogenase 1 Complex With Nad
Length = 354
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 20/276 (7%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-----KVYMLMRDPAV-----CQSINEKHCNCR 176
+ KV ++G G++G+A+A V +QL +V M + + + + IN +H N +
Sbjct: 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVK 67
Query: 177 YFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236
Y P KLP NV+A D A AD + +P QF + + ++ ISL KG+
Sbjct: 68 YLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGV 127
Query: 237 EL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
+ N L+++S++I + L P L G + A E+ ++ + KD +++
Sbjct: 128 DEGPNGLKLISEVIGERLGIPMS---VLMGANIASEVADEKFCETTIGCKDPAQGQLLKE 184
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
L+ + + RI+ +V VEI GALKNV+A+ AG G+ G+N+ AA++ G E+ A
Sbjct: 185 LMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA 244
Query: 355 TKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTV 387
+ P AT G D++ TC+ RNR V
Sbjct: 245 KLFCSGPVSSATFLESCGVADLITTCYG--GRNRKV 278
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 20/276 (7%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-----KVYMLMRDPAV-----CQSINEKHCNCR 176
+ KV ++G G++G+A+A V +QL +V M + + + + IN +H N +
Sbjct: 3 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVK 62
Query: 177 YFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236
Y P KLP NV+A D A AD + +P QF + + ++ ISL KG+
Sbjct: 63 YLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANPTGISLIKGV 122
Query: 237 EL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
+ N L+++S++I + L P L G + A E+ ++ + KD +++
Sbjct: 123 DEGPNGLKLISEVIGERLGIPMS---VLMGANIASEVADEKFCETTIGCKDPAQGQLLKE 179
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
L+ + + RI+ +V VEI GALKNV+A+ AG G+ G+N+ AA++ G E+ A
Sbjct: 180 LMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA 239
Query: 355 TKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTV 387
+ P AT G D++ TC+ RNR V
Sbjct: 240 KLFCSGPVSSATFLESCGVADLITTCYG--GRNRKV 273
>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
pdb|1X0V|B Chain B, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
Length = 354
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 134/280 (47%), Gaps = 28/280 (10%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--------------QSINEKH 172
+ KV ++G G++G+A+A V +QL + DP V + IN +H
Sbjct: 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQF----DPRVTXWVFEEDIGGKKLTEIINTQH 63
Query: 173 CNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232
N +Y P KLP NV+A D A AD + +P QF + + ++ ISL
Sbjct: 64 ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL 123
Query: 233 SKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLAN 290
KG++ N L+++S++I + L P L G + A E+ ++ + KD
Sbjct: 124 IKGVDEGPNGLKLISEVIGERLGIPXS---VLXGANIASEVADEKFCETTIGCKDPAQGQ 180
Query: 291 AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
+++L + + RI+ +V VEI GALKNV+A+ AG G+ G+N+ AA++ G E
Sbjct: 181 LLKELXQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLXEX 240
Query: 351 RWLATKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTV 387
A + P AT G D++ TC+ RNR V
Sbjct: 241 IAFAKLFCSGPVSSATFLESCGVADLITTCYG--GRNRKV 278
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 21/292 (7%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLK-----VYMLMRDPAV-----CQSINEKHCNCRYF 178
KV ++G G++G+A+A + N +L+ V M + + V IN H N +Y
Sbjct: 7 KVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDHENVKYL 66
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238
P KLPENV+A ++ A+ AD + +P QF + I+ V I+L KG++
Sbjct: 67 PGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGIDE 126
Query: 239 --NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLL 296
L+++S II + + L G + A E+ + + SK + ++LL
Sbjct: 127 GPEGLKLISDIIREKMG---IDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFKELL 183
Query: 297 ASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA-- 354
+ + RI+ D VE+ GALKN++A+ AG G+ G+N+ AA++ G E+ A
Sbjct: 184 QTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARI 243
Query: 355 -TKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM 404
K AT G D++ TC+ RNR V +G+ ++++ M
Sbjct: 244 FCKGQVSTATFLESCGVADLITTCYG--GRNRRVAEAFARTGKTIEELEKEM 293
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 19/238 (7%)
Query: 129 KVVVLGGGSFGTAMAAHVA-NKKSQL----KVYMLMRDPAV-----CQSINEKHCNCRYF 178
K+ +LG G++ +A++ V N K+ +V M +RD V IN KH N +Y
Sbjct: 23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYL 82
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD----YVDPGLPFISLSK 234
LP N++A +D + + AD + +P Q+ S L I + + ISL+K
Sbjct: 83 KGVPLPHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTK 142
Query: 235 GL--ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292
G + N +++ S I L P ALSG + A+++ + + + D+
Sbjct: 143 GFIVKKNQMKLCSNYISDFLNIPCS---ALSGANIAMDVAMENFSEATIGGNDKDSLVIW 199
Query: 293 QQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
Q++ + +I+ ++ VEI GALKN++ +A G G+NL NS +A++ G +E+
Sbjct: 200 QRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM 257
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 125 ERTNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-----MLMRDPAV-----CQSINEKHC 173
E+ KV V+G G++GT +A VA N K +V+ M + + + + IN +H
Sbjct: 32 EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQ 91
Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233
N +Y P LP+N++A D ++ D + +P QF + +VD + IS
Sbjct: 92 NVKYLPGITLPDNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCL 151
Query: 234 KGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK------- 284
KG E+ ++++S I + L ALSG + A E+ + + VA
Sbjct: 152 KGFEVGAKGVQLLSSYITEELGIQCG---ALSGANIATEVAQEHWSETTVAYHIPKDFRG 208
Query: 285 -----DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM 339
D K+ A L + +S DV G+ I GALKNV+A+ G V G+ GNN+
Sbjct: 209 EGKDVDHKVLKA---LFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNAS 265
Query: 340 AALVAQGCSEI 350
AA+ G EI
Sbjct: 266 AAIQRVGLGEI 276
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 144/297 (48%), Gaps = 37/297 (12%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR----------YFP 179
V +LG G+ G+A++ + + ++++++ D + +SI+ + R ++P
Sbjct: 3 VSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP 62
Query: 180 EQ--KLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD-YVDPGLPFISLSKGL 236
EQ K EN A+ LLG +PV S L + D Y+ + +SKGL
Sbjct: 63 EQLEKCLEN------AEVVLLGVS-TDGVLPVM--SRILPYLKDQYI------VLISKGL 107
Query: 237 --ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
N++ + + + + + R+ +A++GP+ A E+ ++PT +V +S AN +++
Sbjct: 108 IDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKE 167
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSE 349
+ +++ + ++D+ G EI ALKNV +IA + G +N+ + + +E
Sbjct: 168 IFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINE 227
Query: 350 IRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ 406
+ L +G T GLSG GD++ T RN +G LG G +D+ + + +
Sbjct: 228 MAELIEILGGDRETAFGLSGFGDLIATF--RGGRNGMLGELLGKGLSIDEAMEELER 282
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 238 LNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMN 273
++ +RM Q I + L+NP ++ +SG F +E+ N
Sbjct: 507 IDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKN 542
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 163 AVCQSINEKHC----NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEG 218
A +NE N R++P ++ + +A A+ A L + A +S+ EG
Sbjct: 101 AAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHAST--EG 158
Query: 219 ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSG 264
I+ Y+ P + + K LE ++ +AL NP +PF A+ G
Sbjct: 159 IAHYL-PAVAGFLMEKELE---------VLGKALSNPDRPFTAIIG 194
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYML----------MRDPAVCQSINEKHCNCRYF 178
+V++GGGS G+ +AA ++ +V ++ + +PA ++ + + Y
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDS-RVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAM 207
E + A A+ L+G CLHAM
Sbjct: 78 TEAQAGTAGRAHHWARGRLIGGSSCLHAM 106
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKS-------QLKVYMLMR--DPAVCQSINEKHCNCRYFP 179
K+ + G G G + +A Q KV ML + P V + I E Y
Sbjct: 38 KITISGTGYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQE------YLA 91
Query: 180 EQKLPENVIATTDAKTALLGADYCLHAMPVQFS 212
E+ P N ATTD A ADY + A P +
Sbjct: 92 EK--PLNFRATTDKHDAYRNADYVIIATPTDYD 122
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKS-------QLKVYMLMR--DPAVCQSINEKHCNCRYFP 179
K+ + G G G + +A Q KV ML + P V + I E Y
Sbjct: 38 KITISGTGYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQE------YLA 91
Query: 180 EQKLPENVIATTDAKTALLGADYCLHAMPVQFS 212
E+ P N ATTD A ADY + A P +
Sbjct: 92 EK--PLNFRATTDKHDAYRNADYVIIATPTDYD 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,058,862
Number of Sequences: 62578
Number of extensions: 350349
Number of successful extensions: 1095
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 20
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)