Query 014700
Match_columns 420
No_of_seqs 313 out of 2803
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:40:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0240 GpsA Glycerol-3-phosph 100.0 4.7E-62 1E-66 476.6 28.2 290 127-420 1-290 (329)
2 PTZ00345 glycerol-3-phosphate 100.0 7.1E-56 1.5E-60 445.9 29.0 292 124-420 8-320 (365)
3 TIGR03376 glycerol3P_DH glycer 100.0 1E-55 2.2E-60 441.9 28.7 287 129-420 1-309 (342)
4 PRK12439 NAD(P)H-dependent gly 100.0 1.1E-52 2.3E-57 422.0 30.5 290 126-420 6-296 (341)
5 PRK14620 NAD(P)H-dependent gly 100.0 5.4E-45 1.2E-49 363.7 29.8 289 128-420 1-293 (326)
6 KOG2711 Glycerol-3-phosphate d 100.0 4.6E-44 9.9E-49 346.1 23.5 290 126-420 20-331 (372)
7 PRK14618 NAD(P)H-dependent gly 100.0 7.3E-41 1.6E-45 334.4 28.5 286 125-420 2-289 (328)
8 PRK14619 NAD(P)H-dependent gly 100.0 8.5E-41 1.8E-45 331.3 26.0 263 127-420 4-267 (308)
9 PRK00094 gpsA NAD(P)H-dependen 100.0 4.4E-39 9.6E-44 319.8 30.3 291 127-420 1-291 (325)
10 PF01210 NAD_Gly3P_dh_N: NAD-d 99.9 3.7E-27 8.1E-32 211.7 16.6 156 129-288 1-156 (157)
11 COG2084 MmsB 3-hydroxyisobutyr 99.9 2.3E-24 5E-29 209.5 19.9 225 128-392 1-235 (286)
12 PF07479 NAD_Gly3P_dh_C: NAD-d 99.9 3.3E-25 7E-30 197.0 5.1 114 307-420 1-118 (149)
13 KOG0409 Predicted dehydrogenas 99.9 4.2E-22 9.1E-27 191.2 19.2 226 126-391 34-269 (327)
14 PRK06522 2-dehydropantoate 2-r 99.9 4.9E-21 1.1E-25 188.5 19.3 220 128-362 1-232 (304)
15 PRK15461 NADH-dependent gamma- 99.9 1.9E-20 4.1E-25 184.8 21.0 225 127-391 1-235 (296)
16 PRK12921 2-dehydropantoate 2-r 99.9 1.4E-20 3E-25 185.6 18.8 221 128-362 1-235 (305)
17 PRK08229 2-dehydropantoate 2-r 99.9 2.6E-20 5.7E-25 186.8 20.5 224 127-366 2-238 (341)
18 TIGR03026 NDP-sugDHase nucleot 99.9 9E-20 1.9E-24 187.9 23.7 236 128-391 1-260 (411)
19 PRK06249 2-dehydropantoate 2-r 99.8 2.8E-20 6E-25 185.0 17.8 221 126-361 4-243 (313)
20 COG1893 ApbA Ketopantoate redu 99.8 1.8E-20 3.8E-25 185.7 14.9 222 128-360 1-232 (307)
21 PRK15059 tartronate semialdehy 99.8 1.3E-19 2.9E-24 178.5 20.7 223 128-391 1-232 (292)
22 TIGR01692 HIBADH 3-hydroxyisob 99.8 1.5E-19 3.2E-24 177.7 20.1 197 132-368 1-201 (288)
23 TIGR01505 tartro_sem_red 2-hyd 99.8 4E-19 8.6E-24 174.8 21.1 223 129-391 1-232 (291)
24 PRK12490 6-phosphogluconate de 99.8 9.7E-19 2.1E-23 172.9 21.3 199 128-367 1-208 (299)
25 PRK11559 garR tartronate semia 99.8 1E-18 2.3E-23 172.0 21.5 225 127-391 2-235 (296)
26 PRK05708 2-dehydropantoate 2-r 99.8 3.3E-19 7.2E-24 176.7 16.7 219 127-360 2-229 (305)
27 PLN02350 phosphogluconate dehy 99.8 2.5E-18 5.4E-23 179.6 20.6 208 126-367 5-223 (493)
28 PRK09599 6-phosphogluconate de 99.8 4.5E-18 9.7E-23 168.3 21.3 199 128-367 1-209 (301)
29 PTZ00142 6-phosphogluconate de 99.8 2.4E-18 5.3E-23 179.2 20.1 252 127-417 1-270 (470)
30 PF03446 NAD_binding_2: NAD bi 99.8 2.1E-18 4.5E-23 155.8 15.2 155 127-304 1-158 (163)
31 PLN02858 fructose-bisphosphate 99.8 1.1E-17 2.4E-22 193.0 22.3 227 127-391 4-240 (1378)
32 PRK11064 wecC UDP-N-acetyl-D-m 99.8 3.1E-17 6.8E-22 169.1 22.6 219 127-371 3-250 (415)
33 TIGR00872 gnd_rel 6-phosphoglu 99.8 4E-17 8.7E-22 161.3 21.1 199 128-367 1-207 (298)
34 PLN02858 fructose-bisphosphate 99.8 3.7E-17 8.1E-22 188.6 22.0 227 127-391 324-560 (1378)
35 COG1004 Ugd Predicted UDP-gluc 99.8 1.1E-16 2.5E-21 159.6 22.5 225 128-376 1-249 (414)
36 PLN02688 pyrroline-5-carboxyla 99.7 1.8E-16 3.9E-21 153.7 22.2 194 128-367 1-200 (266)
37 PRK12491 pyrroline-5-carboxyla 99.7 1.8E-16 3.8E-21 154.8 22.0 199 127-367 2-203 (272)
38 TIGR00745 apbA_panE 2-dehydrop 99.7 3.5E-17 7.6E-22 160.1 16.4 213 137-363 1-226 (293)
39 PLN02353 probable UDP-glucose 99.7 3.3E-16 7.2E-21 163.4 22.5 225 127-372 1-255 (473)
40 PRK15057 UDP-glucose 6-dehydro 99.7 3.3E-16 7.1E-21 160.0 21.1 212 128-371 1-235 (388)
41 TIGR00873 gnd 6-phosphoglucona 99.7 2E-16 4.3E-21 164.9 18.8 203 129-367 1-214 (467)
42 PRK07634 pyrroline-5-carboxyla 99.7 3.1E-15 6.7E-20 143.2 25.5 231 125-414 2-244 (245)
43 PRK15182 Vi polysaccharide bio 99.7 1.1E-15 2.5E-20 157.8 21.2 220 127-370 6-245 (425)
44 PRK06928 pyrroline-5-carboxyla 99.7 7.8E-15 1.7E-19 143.6 22.4 159 127-308 1-163 (277)
45 PRK07680 late competence prote 99.7 2.6E-14 5.7E-19 139.4 25.3 158 128-309 1-161 (273)
46 COG0345 ProC Pyrroline-5-carbo 99.7 1.2E-14 2.7E-19 140.4 22.2 205 127-375 1-213 (266)
47 PRK07679 pyrroline-5-carboxyla 99.7 3.9E-14 8.6E-19 138.6 25.2 199 126-367 2-205 (279)
48 COG0677 WecC UDP-N-acetyl-D-ma 99.6 1.7E-14 3.7E-19 143.6 21.3 218 127-368 9-250 (436)
49 PRK11880 pyrroline-5-carboxyla 99.6 9E-14 2E-18 134.9 24.1 155 127-306 2-158 (267)
50 PRK12557 H(2)-dependent methyl 99.6 1.6E-14 3.6E-19 145.1 18.2 200 128-366 1-234 (342)
51 PTZ00431 pyrroline carboxylate 99.6 1E-13 2.2E-18 134.6 20.6 191 127-367 3-196 (260)
52 PRK07531 bifunctional 3-hydrox 99.6 1E-13 2.2E-18 146.2 21.5 201 127-367 4-216 (495)
53 TIGR01915 npdG NADPH-dependent 99.6 8.4E-14 1.8E-18 131.7 18.6 175 128-310 1-191 (219)
54 PRK07417 arogenate dehydrogena 99.6 2.9E-14 6.3E-19 139.6 15.2 174 128-322 1-181 (279)
55 PRK06130 3-hydroxybutyryl-CoA 99.6 2.5E-13 5.5E-18 134.7 21.5 200 125-366 2-214 (311)
56 PRK09287 6-phosphogluconate de 99.6 8.6E-14 1.9E-18 144.8 17.8 238 138-417 1-259 (459)
57 PRK08507 prephenate dehydrogen 99.6 2.3E-13 5E-18 132.9 19.7 207 128-354 1-217 (275)
58 PF03721 UDPG_MGDP_dh_N: UDP-g 99.6 9.1E-14 2E-18 128.3 15.3 163 128-295 1-185 (185)
59 PRK06129 3-hydroxyacyl-CoA deh 99.5 3.8E-13 8.3E-18 133.5 20.3 201 127-367 2-218 (308)
60 PRK06476 pyrroline-5-carboxyla 99.5 9.7E-13 2.1E-17 127.3 21.4 224 128-415 1-234 (258)
61 PRK08655 prephenate dehydrogen 99.5 1E-12 2.3E-17 136.4 21.2 214 128-363 1-223 (437)
62 PRK07502 cyclohexadienyl dehyd 99.5 1.1E-12 2.3E-17 130.2 18.2 179 127-325 6-199 (307)
63 PF03807 F420_oxidored: NADP o 99.5 1.9E-13 4.2E-18 112.0 9.8 93 129-235 1-96 (96)
64 PRK06545 prephenate dehydrogen 99.5 1E-12 2.2E-17 133.3 15.7 182 128-326 1-195 (359)
65 PRK09260 3-hydroxybutyryl-CoA 99.5 1.7E-12 3.7E-17 127.6 16.6 168 127-311 1-185 (288)
66 COG2085 Predicted dinucleotide 99.5 1.3E-12 2.9E-17 121.1 14.4 164 127-309 1-181 (211)
67 PRK08293 3-hydroxybutyryl-CoA 99.4 6.1E-12 1.3E-16 123.7 18.7 169 127-311 3-189 (287)
68 PF02558 ApbA: Ketopantoate re 99.4 4.9E-13 1.1E-17 118.5 8.9 115 130-253 1-115 (151)
69 PLN02256 arogenate dehydrogena 99.4 1.3E-11 2.9E-16 122.3 19.7 211 126-366 35-260 (304)
70 PRK07530 3-hydroxybutyryl-CoA 99.4 9.2E-12 2E-16 122.6 17.7 170 125-310 2-186 (292)
71 PRK11199 tyrA bifunctional cho 99.4 8.5E-12 1.8E-16 127.2 17.9 192 97-327 67-264 (374)
72 PRK05808 3-hydroxybutyryl-CoA 99.4 8.9E-12 1.9E-16 122.1 17.4 171 127-312 3-187 (282)
73 PRK06035 3-hydroxyacyl-CoA deh 99.4 6.2E-12 1.3E-16 123.8 16.3 181 127-323 3-201 (291)
74 PLN02545 3-hydroxybutyryl-CoA 99.4 3.7E-11 8E-16 118.5 21.2 171 124-311 1-187 (295)
75 COG0287 TyrA Prephenate dehydr 99.4 3.3E-11 7E-16 117.9 18.8 220 127-366 3-230 (279)
76 PRK05479 ketol-acid reductoiso 99.4 6.4E-11 1.4E-15 118.1 20.7 149 127-302 17-175 (330)
77 TIGR00465 ilvC ketol-acid redu 99.3 8.4E-11 1.8E-15 117.0 20.1 149 127-302 3-161 (314)
78 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.3 4.4E-11 9.6E-16 126.2 18.7 164 126-311 4-188 (503)
79 PRK08268 3-hydroxy-acyl-CoA de 99.3 1.2E-10 2.6E-15 123.1 21.1 168 126-311 6-190 (507)
80 PRK07066 3-hydroxybutyryl-CoA 99.3 2.1E-10 4.5E-15 114.5 21.4 171 126-311 6-188 (321)
81 PRK14806 bifunctional cyclohex 99.3 7.2E-11 1.6E-15 130.3 19.4 165 127-308 3-177 (735)
82 PRK07819 3-hydroxybutyryl-CoA 99.3 1.9E-10 4.1E-15 113.3 17.4 169 127-311 5-190 (286)
83 PF10727 Rossmann-like: Rossma 99.2 1.8E-11 3.8E-16 106.1 7.3 100 124-238 7-109 (127)
84 PF02737 3HCDH_N: 3-hydroxyacy 99.2 2.8E-10 6.2E-15 104.6 13.9 164 129-308 1-179 (180)
85 PLN02712 arogenate dehydrogena 99.2 3.6E-09 7.7E-14 115.2 23.1 177 127-327 52-242 (667)
86 PLN02712 arogenate dehydrogena 99.2 1.7E-09 3.6E-14 117.8 20.0 164 126-314 368-543 (667)
87 TIGR01724 hmd_rel H2-forming N 99.2 2.5E-09 5.4E-14 105.2 19.2 208 128-360 1-254 (341)
88 COG1023 Gnd Predicted 6-phosph 99.1 2.3E-09 5.1E-14 100.6 16.9 148 128-299 1-152 (300)
89 PRK08818 prephenate dehydrogen 99.1 1.8E-09 3.8E-14 109.7 15.5 166 126-325 3-175 (370)
90 TIGR00112 proC pyrroline-5-car 99.1 2.5E-08 5.4E-13 96.1 22.0 173 153-367 10-183 (245)
91 PRK12480 D-lactate dehydrogena 99.0 2.7E-09 5.8E-14 107.1 12.2 121 91-240 119-241 (330)
92 COG1250 FadB 3-hydroxyacyl-CoA 99.0 7.5E-09 1.6E-13 102.2 14.6 170 126-311 2-186 (307)
93 PF02153 PDH: Prephenate dehyd 99.0 1.1E-08 2.4E-13 99.2 14.2 201 142-363 1-214 (258)
94 COG0362 Gnd 6-phosphogluconate 99.0 3.3E-08 7.2E-13 98.8 17.6 153 127-299 3-160 (473)
95 TIGR02437 FadB fatty oxidation 98.9 2E-08 4.3E-13 110.4 17.0 170 126-311 312-496 (714)
96 KOG2666 UDP-glucose/GDP-mannos 98.9 6.9E-09 1.5E-13 100.8 11.3 222 127-360 1-254 (481)
97 TIGR02440 FadJ fatty oxidation 98.9 3.2E-08 6.9E-13 108.7 18.1 169 127-311 304-488 (699)
98 PRK11154 fadJ multifunctional 98.9 3.4E-08 7.3E-13 108.7 17.4 169 127-311 309-493 (708)
99 PRK11730 fadB multifunctional 98.9 3.8E-08 8.3E-13 108.3 17.3 169 127-311 313-496 (715)
100 TIGR02441 fa_ox_alpha_mit fatt 98.9 3.2E-08 6.8E-13 109.2 16.6 170 126-311 334-518 (737)
101 PRK02318 mannitol-1-phosphate 98.9 5.8E-09 1.3E-13 106.8 9.8 225 128-365 1-270 (381)
102 PRK08605 D-lactate dehydrogena 98.9 5E-09 1.1E-13 105.3 9.0 123 91-240 119-243 (332)
103 PRK13243 glyoxylate reductase; 98.9 9.4E-09 2E-13 103.3 10.5 128 91-240 117-247 (333)
104 PRK07574 formate dehydrogenase 98.9 1.4E-08 3E-13 103.8 10.9 126 91-240 164-291 (385)
105 COG1052 LdhA Lactate dehydroge 98.8 1.1E-08 2.4E-13 102.2 9.8 137 89-250 114-252 (324)
106 PF02826 2-Hacid_dh_C: D-isome 98.8 1.1E-08 2.3E-13 93.9 8.8 96 127-239 36-133 (178)
107 COG0111 SerA Phosphoglycerate 98.8 1E-08 2.2E-13 102.5 9.4 125 89-240 114-240 (324)
108 PLN03139 formate dehydrogenase 98.8 1.9E-08 4.1E-13 102.7 10.4 125 91-239 171-297 (386)
109 PF07991 IlvN: Acetohydroxy ac 98.8 3.5E-08 7.5E-13 88.3 9.7 93 127-237 4-98 (165)
110 PRK08269 3-hydroxybutyryl-CoA 98.7 1.6E-07 3.5E-12 93.7 13.5 188 138-366 1-213 (314)
111 PRK13403 ketol-acid reductoiso 98.7 9E-08 1.9E-12 94.9 11.1 94 127-238 16-110 (335)
112 PRK06444 prephenate dehydrogen 98.7 2.8E-07 6E-12 85.9 13.8 167 128-366 1-174 (197)
113 TIGR01327 PGDH D-3-phosphoglyc 98.7 5E-08 1.1E-12 103.8 9.2 123 91-240 112-236 (525)
114 PRK13581 D-3-phosphoglycerate 98.7 6.2E-08 1.3E-12 103.1 9.3 122 91-240 114-237 (526)
115 PRK15469 ghrA bifunctional gly 98.6 1.5E-07 3.2E-12 93.9 9.7 96 127-240 136-233 (312)
116 PRK06436 glycerate dehydrogena 98.6 1.1E-07 2.5E-12 94.3 8.6 117 91-240 98-216 (303)
117 PLN02306 hydroxypyruvate reduc 98.6 2.1E-07 4.5E-12 95.3 10.5 140 91-240 136-279 (386)
118 PRK15409 bifunctional glyoxyla 98.6 1.5E-07 3.2E-12 94.3 9.2 126 91-240 116-243 (323)
119 PRK11790 D-3-phosphoglycerate 98.6 1.5E-07 3.3E-12 97.1 9.1 120 91-240 125-246 (409)
120 KOG3124 Pyrroline-5-carboxylat 98.6 1.4E-06 3E-11 83.1 14.0 159 128-310 1-163 (267)
121 PRK08410 2-hydroxyacid dehydro 98.6 1.1E-07 2.3E-12 94.9 6.5 125 91-240 113-239 (311)
122 KOG2653 6-phosphogluconate deh 98.5 4.5E-07 9.7E-12 89.6 10.1 258 127-419 6-276 (487)
123 PRK06223 malate dehydrogenase; 98.5 1.2E-06 2.6E-11 87.0 13.2 117 127-253 2-134 (307)
124 cd05297 GH4_alpha_glucosidase_ 98.5 4.1E-07 8.8E-12 94.4 10.2 79 128-210 1-85 (423)
125 KOG0069 Glyoxylate/hydroxypyru 98.5 5.3E-07 1.2E-11 89.8 10.4 135 89-249 132-268 (336)
126 COG4007 Predicted dehydrogenas 98.5 6.9E-06 1.5E-10 78.2 17.0 159 127-307 1-194 (340)
127 TIGR01763 MalateDH_bact malate 98.5 1.3E-06 2.7E-11 87.0 12.9 115 127-251 1-131 (305)
128 PRK13304 L-aspartate dehydroge 98.5 1.2E-06 2.5E-11 85.5 12.3 93 127-235 1-94 (265)
129 PRK06932 glycerate dehydrogena 98.5 2.3E-07 4.9E-12 92.6 7.3 124 91-240 115-240 (314)
130 KOG2380 Prephenate dehydrogena 98.5 1.7E-06 3.6E-11 85.3 12.9 160 124-305 49-217 (480)
131 PRK06487 glycerate dehydrogena 98.5 2.6E-07 5.6E-12 92.4 7.0 124 90-240 115-240 (317)
132 PLN02928 oxidoreductase family 98.5 4.8E-07 1E-11 91.5 8.6 133 91-240 135-269 (347)
133 PF00056 Ldh_1_N: lactate/mala 98.4 2.1E-06 4.6E-11 75.8 10.4 117 128-254 1-134 (141)
134 PRK13302 putative L-aspartate 98.4 2.8E-06 6.1E-11 83.1 10.9 92 127-234 6-99 (271)
135 cd01065 NAD_bind_Shikimate_DH 98.3 1.1E-06 2.5E-11 77.7 7.2 96 127-233 19-116 (155)
136 TIGR02853 spore_dpaA dipicolin 98.3 2.5E-06 5.5E-11 84.1 10.0 91 127-234 151-241 (287)
137 PRK15438 erythronate-4-phospha 98.3 1.3E-06 2.8E-11 89.1 8.0 93 127-240 116-214 (378)
138 PRK00257 erythronate-4-phospha 98.3 1.3E-06 2.9E-11 89.2 8.0 93 127-240 116-214 (381)
139 PTZ00117 malate dehydrogenase; 98.3 8.7E-06 1.9E-10 81.5 13.0 115 127-253 5-137 (319)
140 PTZ00082 L-lactate dehydrogena 98.3 8.5E-06 1.8E-10 81.6 12.6 105 125-236 4-131 (321)
141 COG0059 IlvC Ketol-acid reduct 98.2 6.7E-05 1.5E-09 73.3 17.1 95 126-238 17-113 (338)
142 PF01408 GFO_IDH_MocA: Oxidore 98.2 1.5E-05 3.2E-10 67.4 11.3 93 128-237 1-96 (120)
143 PF01113 DapB_N: Dihydrodipico 98.2 5.3E-06 1.1E-10 71.6 8.2 122 128-267 1-124 (124)
144 cd05293 LDH_1 A subgroup of L- 98.2 1.7E-05 3.6E-10 79.3 12.7 105 127-236 3-123 (312)
145 cd05213 NAD_bind_Glutamyl_tRNA 98.2 1.1E-05 2.4E-10 80.4 11.1 97 126-234 177-274 (311)
146 cd00650 LDH_MDH_like NAD-depen 98.2 1.3E-05 2.8E-10 77.9 10.9 113 130-251 1-132 (263)
147 cd01339 LDH-like_MDH L-lactate 98.1 1.7E-05 3.8E-10 78.5 10.9 114 130-253 1-130 (300)
148 PRK08306 dipicolinate synthase 98.1 2.1E-05 4.6E-10 77.9 11.2 91 127-234 152-242 (296)
149 PRK06141 ornithine cyclodeamin 98.1 1.4E-05 3E-10 79.8 9.6 94 126-232 124-218 (314)
150 cd05291 HicDH_like L-2-hydroxy 98.1 2.6E-05 5.6E-10 77.6 11.5 103 128-236 1-120 (306)
151 PRK14194 bifunctional 5,10-met 98.1 8.1E-06 1.8E-10 80.6 7.4 72 126-233 158-231 (301)
152 cd05292 LDH_2 A subgroup of L- 98.1 3.6E-05 7.7E-10 76.7 11.6 99 128-234 1-117 (308)
153 KOG2304 3-hydroxyacyl-CoA dehy 98.0 2.9E-05 6.2E-10 72.9 9.6 171 124-311 8-200 (298)
154 PF01488 Shikimate_DH: Shikima 98.0 1.8E-05 4E-10 69.2 7.7 75 127-210 12-86 (135)
155 PLN00112 malate dehydrogenase 98.0 0.00016 3.4E-09 75.2 15.1 118 127-253 100-241 (444)
156 cd00300 LDH_like L-lactate deh 98.0 5.9E-05 1.3E-09 74.9 11.3 112 130-251 1-128 (300)
157 PRK05225 ketol-acid reductoiso 98.0 1.7E-05 3.7E-10 81.8 7.5 93 127-237 36-134 (487)
158 PRK15076 alpha-galactosidase; 97.9 3.7E-05 8E-10 80.0 9.8 80 127-208 1-84 (431)
159 COG1748 LYS9 Saccharopine dehy 97.9 4.7E-05 1E-09 77.7 9.7 86 127-218 1-87 (389)
160 TIGR02371 ala_DH_arch alanine 97.9 6.1E-05 1.3E-09 75.6 10.0 96 126-233 127-222 (325)
161 PRK14188 bifunctional 5,10-met 97.9 3.4E-05 7.5E-10 76.2 7.7 71 126-233 157-230 (296)
162 PRK00066 ldh L-lactate dehydro 97.9 0.0001 2.2E-09 73.7 11.0 104 126-236 5-125 (315)
163 PRK00048 dihydrodipicolinate r 97.9 7.8E-05 1.7E-09 72.4 9.8 96 127-240 1-98 (257)
164 KOG0068 D-3-phosphoglycerate d 97.9 4.4E-05 9.6E-10 75.4 8.0 123 90-240 119-243 (406)
165 COG0569 TrkA K+ transport syst 97.8 7.7E-05 1.7E-09 71.0 9.3 92 128-230 1-98 (225)
166 PLN02602 lactate dehydrogenase 97.8 0.00019 4E-09 72.8 12.1 102 128-236 38-157 (350)
167 PF00670 AdoHcyase_NAD: S-aden 97.8 0.0001 2.2E-09 66.4 8.9 93 120-233 16-110 (162)
168 TIGR00036 dapB dihydrodipicoli 97.8 0.00026 5.6E-09 69.1 12.4 126 127-270 1-130 (266)
169 COG1712 Predicted dinucleotide 97.8 0.00028 6.1E-09 66.4 11.8 91 128-232 1-92 (255)
170 PRK05442 malate dehydrogenase; 97.8 7.6E-05 1.7E-09 74.9 8.5 106 124-237 1-134 (326)
171 PRK13303 L-aspartate dehydroge 97.8 0.00022 4.8E-09 69.6 11.5 93 127-235 1-94 (265)
172 cd05294 LDH-like_MDH_nadp A la 97.8 0.00013 2.8E-09 72.8 10.0 107 128-237 1-125 (309)
173 cd05290 LDH_3 A subgroup of L- 97.8 0.00022 4.8E-09 71.0 11.6 104 129-237 1-123 (307)
174 cd01075 NAD_bind_Leu_Phe_Val_D 97.8 0.0002 4.4E-09 66.9 10.5 89 127-236 28-118 (200)
175 PRK05476 S-adenosyl-L-homocyst 97.8 0.00019 4E-09 74.4 11.1 90 124-233 209-299 (425)
176 PTZ00075 Adenosylhomocysteinas 97.8 0.0001 2.2E-09 77.0 9.0 90 126-235 253-343 (476)
177 PLN00203 glutamyl-tRNA reducta 97.7 0.00016 3.4E-09 77.0 10.4 98 127-233 266-369 (519)
178 PRK08618 ornithine cyclodeamin 97.7 0.00016 3.4E-09 72.7 9.9 94 126-232 126-220 (325)
179 smart00859 Semialdhyde_dh Semi 97.7 0.00015 3.2E-09 62.0 8.4 100 129-236 1-102 (122)
180 cd01337 MDH_glyoxysomal_mitoch 97.7 0.00019 4.2E-09 71.5 10.4 116 128-253 1-136 (310)
181 TIGR00936 ahcY adenosylhomocys 97.7 0.0003 6.5E-09 72.5 11.6 91 125-235 193-284 (406)
182 PRK00045 hemA glutamyl-tRNA re 97.7 0.00014 3E-09 75.6 8.8 97 126-234 181-281 (423)
183 PRK09496 trkA potassium transp 97.6 0.00023 4.9E-09 74.1 9.8 84 128-220 1-86 (453)
184 PTZ00325 malate dehydrogenase; 97.6 0.00026 5.6E-09 71.0 9.6 102 126-238 7-130 (321)
185 PRK07340 ornithine cyclodeamin 97.6 0.00031 6.7E-09 69.9 10.1 93 126-233 124-217 (304)
186 PF01118 Semialdhyde_dh: Semia 97.6 0.00015 3.2E-09 62.1 6.7 97 129-236 1-100 (121)
187 COG0039 Mdh Malate/lactate deh 97.6 0.0005 1.1E-08 68.3 11.3 104 128-237 1-122 (313)
188 TIGR01035 hemA glutamyl-tRNA r 97.6 0.00034 7.4E-09 72.6 10.6 96 127-234 180-278 (417)
189 TIGR01759 MalateDH-SF1 malate 97.6 0.00048 1E-08 69.1 11.3 116 126-252 2-143 (323)
190 cd01338 MDH_choloroplast_like 97.6 0.00024 5.2E-09 71.3 8.7 105 127-237 2-132 (322)
191 PF10100 DUF2338: Uncharacteri 97.6 0.006 1.3E-07 62.1 18.3 231 127-362 1-274 (429)
192 PRK08291 ectoine utilization p 97.6 0.00035 7.6E-09 70.2 9.7 95 126-231 131-225 (330)
193 KOG2305 3-hydroxyacyl-CoA dehy 97.6 8.1E-05 1.8E-09 70.0 4.6 110 127-238 3-125 (313)
194 PF02423 OCD_Mu_crystall: Orni 97.6 0.00037 8.1E-09 69.6 9.7 98 126-233 127-224 (313)
195 PLN02494 adenosylhomocysteinas 97.5 0.00041 8.8E-09 72.4 10.0 91 125-234 252-342 (477)
196 TIGR01772 MDH_euk_gproteo mala 97.5 0.00045 9.7E-09 69.0 9.9 116 129-254 1-136 (312)
197 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00063 1.4E-08 70.3 11.0 90 125-234 200-290 (413)
198 PRK07589 ornithine cyclodeamin 97.5 0.0004 8.7E-09 70.3 9.3 97 126-232 128-224 (346)
199 PRK00436 argC N-acetyl-gamma-g 97.5 0.0018 4E-08 65.5 14.1 101 127-238 2-104 (343)
200 PRK14179 bifunctional 5,10-met 97.5 0.00019 4.2E-09 70.4 6.7 72 126-233 157-230 (284)
201 PRK06823 ornithine cyclodeamin 97.5 0.00058 1.3E-08 68.3 10.0 97 125-233 126-222 (315)
202 COG0373 HemA Glutamyl-tRNA red 97.5 0.0006 1.3E-08 70.1 10.1 95 127-234 178-275 (414)
203 PRK06046 alanine dehydrogenase 97.5 0.00048 1E-08 69.2 9.2 96 126-233 128-223 (326)
204 TIGR02354 thiF_fam2 thiamine b 97.5 0.00039 8.4E-09 65.1 7.7 34 127-161 21-54 (200)
205 PRK13301 putative L-aspartate 97.4 0.0018 3.9E-08 62.9 12.1 92 127-236 2-96 (267)
206 PRK04148 hypothetical protein; 97.4 0.00084 1.8E-08 58.7 8.8 95 127-233 17-111 (134)
207 TIGR00518 alaDH alanine dehydr 97.4 0.00041 8.9E-09 70.9 7.8 98 127-233 167-267 (370)
208 COG2423 Predicted ornithine cy 97.4 0.0009 1.9E-08 67.2 10.0 97 126-233 129-225 (330)
209 TIGR01850 argC N-acetyl-gamma- 97.4 0.002 4.3E-08 65.3 12.6 99 128-236 1-102 (346)
210 cd01080 NAD_bind_m-THF_DH_Cycl 97.4 0.00047 1E-08 62.7 7.2 73 127-234 44-117 (168)
211 PRK05086 malate dehydrogenase; 97.4 0.00083 1.8E-08 67.1 9.6 102 128-237 1-122 (312)
212 PRK12549 shikimate 5-dehydroge 97.4 0.00063 1.4E-08 67.1 8.6 76 127-209 127-202 (284)
213 PRK13940 glutamyl-tRNA reducta 97.4 0.00052 1.1E-08 71.2 8.3 74 127-211 181-254 (414)
214 PLN02819 lysine-ketoglutarate 97.4 0.0018 3.9E-08 73.8 13.2 85 125-219 567-668 (1042)
215 TIGR02992 ectoine_eutC ectoine 97.4 0.0009 1.9E-08 67.2 9.7 95 126-232 128-223 (326)
216 cd00704 MDH Malate dehydrogena 97.4 0.00092 2E-08 67.1 9.4 115 128-253 1-141 (323)
217 cd01336 MDH_cytoplasmic_cytoso 97.3 0.0007 1.5E-08 68.0 8.4 106 127-236 2-131 (325)
218 PRK08300 acetaldehyde dehydrog 97.3 0.0022 4.8E-08 63.5 11.7 92 125-233 2-101 (302)
219 PLN00106 malate dehydrogenase 97.3 0.0011 2.3E-08 66.6 9.5 100 127-237 18-139 (323)
220 TIGR01757 Malate-DH_plant mala 97.3 0.0027 5.8E-08 65.2 12.5 124 110-237 23-174 (387)
221 PRK04207 glyceraldehyde-3-phos 97.3 0.003 6.6E-08 63.8 12.5 100 127-231 1-107 (341)
222 TIGR00507 aroE shikimate 5-deh 97.3 0.0012 2.6E-08 64.4 9.3 95 127-233 117-214 (270)
223 cd01078 NAD_bind_H4MPT_DH NADP 97.3 0.00097 2.1E-08 61.6 8.3 96 127-233 28-129 (194)
224 PRK11579 putative oxidoreducta 97.3 0.0021 4.6E-08 64.8 11.4 93 126-238 3-99 (346)
225 PRK06407 ornithine cyclodeamin 97.3 0.0015 3.2E-08 65.0 9.8 96 126-232 116-211 (301)
226 COG0673 MviM Predicted dehydro 97.3 0.0013 2.9E-08 65.5 9.6 97 126-238 2-102 (342)
227 TIGR01921 DAP-DH diaminopimela 97.3 0.00071 1.5E-08 67.7 7.4 69 127-211 3-72 (324)
228 COG4408 Uncharacterized protei 97.3 0.021 4.6E-07 56.6 17.4 232 124-364 1-278 (431)
229 PF13460 NAD_binding_10: NADH( 97.2 0.0012 2.7E-08 59.6 8.3 81 130-221 1-87 (183)
230 COG0002 ArgC Acetylglutamate s 97.2 0.0041 8.8E-08 62.3 12.3 101 127-236 2-104 (349)
231 cd05298 GH4_GlvA_pagL_like Gly 97.2 0.0022 4.8E-08 66.9 10.9 117 128-252 1-157 (437)
232 PRK06719 precorrin-2 dehydroge 97.2 0.0034 7.5E-08 56.4 10.6 79 127-220 13-91 (157)
233 PF02254 TrkA_N: TrkA-N domain 97.2 0.0025 5.4E-08 53.4 8.7 93 130-232 1-95 (116)
234 PRK12475 thiamine/molybdopteri 97.1 0.0023 5E-08 64.6 9.8 36 126-162 23-58 (338)
235 PF03435 Saccharop_dh: Sacchar 97.1 0.0011 2.5E-08 67.7 7.6 77 130-216 1-84 (386)
236 TIGR01771 L-LDH-NAD L-lactate 97.1 0.0021 4.5E-08 63.9 9.0 100 132-236 1-116 (299)
237 TIGR02356 adenyl_thiF thiazole 97.1 0.0018 3.9E-08 60.5 8.1 35 126-161 20-54 (202)
238 PRK09310 aroDE bifunctional 3- 97.1 0.001 2.2E-08 70.3 7.0 71 127-211 332-402 (477)
239 COG2910 Putative NADH-flavin r 97.1 0.00087 1.9E-08 61.4 5.6 70 128-208 1-71 (211)
240 TIGR01758 MDH_euk_cyt malate d 97.1 0.0034 7.5E-08 63.0 10.5 117 129-254 1-141 (324)
241 PRK09496 trkA potassium transp 97.1 0.0035 7.7E-08 65.2 10.8 97 127-230 231-328 (453)
242 cd05197 GH4_glycoside_hydrolas 97.0 0.0036 7.8E-08 65.2 10.4 117 128-252 1-157 (425)
243 TIGR03215 ac_ald_DH_ac acetald 97.0 0.0062 1.4E-07 60.0 11.5 89 128-233 2-95 (285)
244 PLN02968 Probable N-acetyl-gam 97.0 0.0022 4.7E-08 65.9 8.4 99 126-235 37-136 (381)
245 PRK00258 aroE shikimate 5-dehy 97.0 0.0032 6.9E-08 61.8 9.1 97 127-233 123-221 (278)
246 TIGR01809 Shik-DH-AROM shikima 97.0 0.0025 5.4E-08 62.7 8.0 74 127-210 125-201 (282)
247 PRK06718 precorrin-2 dehydroge 97.0 0.0063 1.4E-07 57.0 10.2 81 127-220 10-91 (202)
248 PRK14175 bifunctional 5,10-met 96.9 0.0027 5.9E-08 62.5 7.6 73 126-233 157-230 (286)
249 cd01487 E1_ThiF_like E1_ThiF_l 96.9 0.0037 8E-08 57.1 7.9 33 129-162 1-33 (174)
250 PRK14874 aspartate-semialdehyd 96.9 0.003 6.4E-08 63.7 7.7 93 127-234 1-95 (334)
251 PRK10669 putative cation:proto 96.8 0.0044 9.6E-08 66.7 9.4 96 128-233 418-515 (558)
252 PRK03659 glutathione-regulated 96.8 0.0042 9.1E-08 67.5 9.1 98 127-234 400-499 (601)
253 PRK06199 ornithine cyclodeamin 96.8 0.0054 1.2E-07 62.9 9.1 101 125-232 153-258 (379)
254 cd05296 GH4_P_beta_glucosidase 96.8 0.0069 1.5E-07 63.0 9.6 116 128-251 1-157 (419)
255 cd05191 NAD_bind_amino_acid_DH 96.8 0.0069 1.5E-07 48.6 7.6 33 127-160 23-55 (86)
256 PF00899 ThiF: ThiF family; I 96.7 0.024 5.2E-07 49.2 11.4 35 127-162 2-36 (135)
257 TIGR01761 thiaz-red thiazoliny 96.7 0.02 4.2E-07 58.0 12.3 94 127-238 3-101 (343)
258 PF02056 Glyco_hydro_4: Family 96.7 0.0015 3.2E-08 60.3 3.8 80 129-210 1-84 (183)
259 PRK05671 aspartate-semialdehyd 96.7 0.0068 1.5E-07 61.2 8.5 96 124-235 1-99 (336)
260 CHL00194 ycf39 Ycf39; Provisio 96.7 0.0037 8.1E-08 62.0 6.6 72 128-208 1-73 (317)
261 PRK11861 bifunctional prephena 96.7 0.0085 1.8E-07 66.0 10.0 119 203-326 1-132 (673)
262 TIGR01470 cysG_Nterm siroheme 96.7 0.05 1.1E-06 51.0 13.8 73 127-212 9-82 (205)
263 TIGR00561 pntA NAD(P) transhyd 96.6 0.01 2.2E-07 63.0 9.9 102 128-233 165-284 (511)
264 PRK08644 thiamine biosynthesis 96.6 0.0048 1E-07 58.2 6.7 35 126-161 27-61 (212)
265 PRK08328 hypothetical protein; 96.6 0.0082 1.8E-07 57.4 8.2 42 127-169 27-68 (231)
266 KOG1495 Lactate dehydrogenase 96.6 0.014 3E-07 56.6 9.3 106 127-238 20-142 (332)
267 cd05311 NAD_bind_2_malic_enz N 96.6 0.013 2.8E-07 55.8 9.2 93 127-236 25-131 (226)
268 COG0289 DapB Dihydrodipicolina 96.5 0.027 5.8E-07 54.5 11.3 147 127-304 2-150 (266)
269 PRK14189 bifunctional 5,10-met 96.5 0.0055 1.2E-07 60.3 6.7 73 126-233 157-230 (285)
270 cd00757 ThiF_MoeB_HesA_family 96.5 0.011 2.3E-07 56.4 8.4 35 127-162 21-55 (228)
271 PRK03562 glutathione-regulated 96.5 0.0093 2E-07 65.1 9.0 94 127-233 400-498 (621)
272 cd01486 Apg7 Apg7 is an E1-lik 96.4 0.0064 1.4E-07 60.2 6.5 105 129-236 1-143 (307)
273 PRK14192 bifunctional 5,10-met 96.4 0.01 2.2E-07 58.5 7.9 73 126-233 158-231 (283)
274 TIGR01381 E1_like_apg7 E1-like 96.4 0.015 3.4E-07 62.8 9.7 107 127-236 338-483 (664)
275 TIGR00978 asd_EA aspartate-sem 96.4 0.021 4.5E-07 57.8 10.0 100 128-233 1-104 (341)
276 PRK06270 homoserine dehydrogen 96.4 0.025 5.4E-07 57.2 10.4 104 127-236 2-128 (341)
277 PF13380 CoA_binding_2: CoA bi 96.3 0.016 3.4E-07 49.4 7.6 74 128-222 1-78 (116)
278 PRK14982 acyl-ACP reductase; P 96.3 0.013 2.8E-07 59.1 8.1 90 127-233 155-246 (340)
279 cd01483 E1_enzyme_family Super 96.3 0.018 4E-07 50.3 8.2 33 129-162 1-33 (143)
280 PRK10206 putative oxidoreducta 96.3 0.018 3.9E-07 58.2 9.2 95 127-238 1-99 (344)
281 COG2344 AT-rich DNA-binding pr 96.3 0.011 2.4E-07 54.3 6.8 81 126-221 83-168 (211)
282 PF02629 CoA_binding: CoA bind 96.3 0.0071 1.5E-07 49.6 5.0 89 127-234 3-95 (96)
283 PRK09424 pntA NAD(P) transhydr 96.3 0.023 5.1E-07 60.4 10.1 105 127-233 165-285 (509)
284 cd05212 NAD_bind_m-THF_DH_Cycl 96.3 0.017 3.7E-07 51.0 7.6 73 126-233 27-100 (140)
285 PRK05472 redox-sensing transcr 96.3 0.0066 1.4E-07 57.2 5.3 79 127-220 84-167 (213)
286 PF01262 AlaDh_PNT_C: Alanine 96.3 0.0055 1.2E-07 55.5 4.6 105 127-233 20-139 (168)
287 TIGR02355 moeB molybdopterin s 96.2 0.011 2.4E-07 56.8 6.9 37 126-163 23-59 (240)
288 PRK00683 murD UDP-N-acetylmura 96.2 0.012 2.7E-07 60.9 7.7 36 127-164 3-38 (418)
289 PRK06349 homoserine dehydrogen 96.2 0.012 2.6E-07 61.3 7.6 94 127-237 3-108 (426)
290 cd01492 Aos1_SUMO Ubiquitin ac 96.2 0.017 3.6E-07 53.9 7.6 35 127-162 21-55 (197)
291 PLN02383 aspartate semialdehyd 96.2 0.016 3.6E-07 58.6 7.8 93 126-234 6-101 (344)
292 COG0686 Ald Alanine dehydrogen 96.2 0.0072 1.6E-07 59.7 5.0 98 127-233 168-268 (371)
293 PF05368 NmrA: NmrA-like famil 96.1 0.022 4.7E-07 53.7 7.8 70 130-208 1-73 (233)
294 PF02882 THF_DHG_CYH_C: Tetrah 96.1 0.018 3.8E-07 52.0 6.8 73 126-233 35-108 (160)
295 PRK08040 putative semialdehyde 96.0 0.019 4.1E-07 58.0 7.5 94 125-234 2-98 (336)
296 PRK07688 thiamine/molybdopteri 96.0 0.02 4.4E-07 57.9 7.7 36 126-162 23-58 (339)
297 PRK12548 shikimate 5-dehydroge 96.0 0.017 3.6E-07 57.1 7.0 79 127-209 126-209 (289)
298 COG1064 AdhP Zn-dependent alco 96.0 0.042 9.2E-07 55.3 9.8 82 127-220 167-250 (339)
299 PF13241 NAD_binding_7: Putati 96.0 0.018 3.9E-07 47.9 6.1 75 127-220 7-81 (103)
300 PRK10792 bifunctional 5,10-met 96.0 0.021 4.6E-07 56.2 7.5 72 127-233 159-231 (285)
301 cd01485 E1-1_like Ubiquitin ac 96.0 0.024 5.2E-07 52.9 7.4 35 127-162 19-53 (198)
302 TIGR02717 AcCoA-syn-alpha acet 95.9 0.05 1.1E-06 57.1 10.4 91 127-238 7-101 (447)
303 PRK14191 bifunctional 5,10-met 95.9 0.022 4.7E-07 56.1 7.0 73 126-233 156-229 (285)
304 COG1648 CysG Siroheme synthase 95.8 0.2 4.3E-06 47.3 13.0 81 127-220 12-93 (210)
305 PRK14106 murD UDP-N-acetylmura 95.8 0.037 7.9E-07 57.7 8.9 68 127-208 5-77 (450)
306 COG1486 CelF Alpha-galactosida 95.8 0.017 3.7E-07 59.8 6.3 81 126-208 2-86 (442)
307 PRK06153 hypothetical protein; 95.8 0.027 5.8E-07 57.6 7.3 109 126-237 175-302 (393)
308 COG0169 AroE Shikimate 5-dehyd 95.8 0.037 8.1E-07 54.5 8.1 97 127-233 126-226 (283)
309 PRK08223 hypothetical protein; 95.7 0.047 1E-06 53.9 8.7 36 126-162 26-61 (287)
310 PLN00141 Tic62-NAD(P)-related 95.7 0.029 6.3E-07 53.6 7.2 40 126-167 16-56 (251)
311 TIGR01296 asd_B aspartate-semi 95.7 0.022 4.7E-07 57.7 6.5 88 129-234 1-93 (339)
312 PRK05690 molybdopterin biosynt 95.7 0.037 8.1E-07 53.4 7.8 36 126-162 31-66 (245)
313 PRK12809 putative oxidoreducta 95.7 0.026 5.7E-07 61.8 7.3 35 126-162 309-343 (639)
314 PRK05600 thiamine biosynthesis 95.6 0.056 1.2E-06 55.3 9.2 92 127-221 41-153 (370)
315 PRK05562 precorrin-2 dehydroge 95.6 0.29 6.2E-06 46.6 13.3 81 127-220 25-106 (223)
316 PRK11908 NAD-dependent epimera 95.6 0.028 6E-07 56.4 6.8 40 127-167 1-41 (347)
317 PRK12409 D-amino acid dehydrog 95.6 0.015 3.2E-07 59.8 4.9 34 127-162 1-34 (410)
318 PRK11863 N-acetyl-gamma-glutam 95.6 0.029 6.4E-07 56.0 6.7 80 127-234 2-82 (313)
319 PRK08664 aspartate-semialdehyd 95.6 0.074 1.6E-06 53.9 9.8 101 127-234 3-108 (349)
320 PF03447 NAD_binding_3: Homose 95.6 0.069 1.5E-06 45.0 8.1 86 134-238 1-95 (117)
321 PRK08762 molybdopterin biosynt 95.6 0.038 8.2E-07 56.6 7.7 35 126-161 134-168 (376)
322 PRK12749 quinate/shikimate deh 95.5 0.099 2.2E-06 51.7 9.9 75 127-209 124-206 (288)
323 PRK15116 sulfur acceptor prote 95.4 0.067 1.5E-06 52.3 8.5 35 127-162 30-64 (268)
324 PRK06728 aspartate-semialdehyd 95.4 0.047 1E-06 55.4 7.6 92 127-235 5-101 (347)
325 PRK01710 murD UDP-N-acetylmura 95.4 0.07 1.5E-06 56.0 9.3 66 127-206 14-84 (458)
326 PRK14027 quinate/shikimate deh 95.4 0.07 1.5E-06 52.6 8.6 76 127-209 127-204 (283)
327 COG0300 DltE Short-chain dehyd 95.4 0.17 3.7E-06 49.4 11.0 44 126-171 5-49 (265)
328 KOG1502 Flavonol reductase/cin 95.4 0.039 8.4E-07 55.2 6.7 77 126-206 5-85 (327)
329 PF00070 Pyr_redox: Pyridine n 95.4 0.03 6.5E-07 43.9 4.9 32 129-162 1-32 (80)
330 TIGR01851 argC_other N-acetyl- 95.3 0.11 2.3E-06 51.9 9.5 79 128-234 2-81 (310)
331 PF03059 NAS: Nicotianamine sy 95.3 0.056 1.2E-06 53.0 7.4 99 128-231 122-228 (276)
332 COG0136 Asd Aspartate-semialde 95.3 0.34 7.4E-06 48.7 13.0 94 127-234 1-98 (334)
333 PRK14178 bifunctional 5,10-met 95.3 0.049 1.1E-06 53.5 6.9 73 126-233 151-224 (279)
334 PRK06598 aspartate-semialdehyd 95.2 0.14 3.1E-06 52.3 10.5 93 127-234 1-99 (369)
335 PRK03369 murD UDP-N-acetylmura 95.2 0.11 2.4E-06 55.1 10.0 67 127-207 12-78 (488)
336 TIGR01546 GAPDH-II_archae glyc 95.2 0.12 2.7E-06 52.0 9.8 81 130-211 1-87 (333)
337 PRK06392 homoserine dehydrogen 95.2 0.016 3.5E-07 58.2 3.5 107 128-238 1-121 (326)
338 cd01079 NAD_bind_m-THF_DH NAD 95.2 0.038 8.2E-07 51.4 5.6 94 126-233 61-156 (197)
339 PRK00711 D-amino acid dehydrog 95.2 0.026 5.7E-07 57.8 5.1 34 128-163 1-34 (416)
340 PRK05678 succinyl-CoA syntheta 95.2 0.26 5.6E-06 48.8 11.8 89 127-238 8-102 (291)
341 PRK05597 molybdopterin biosynt 95.1 0.066 1.4E-06 54.5 7.7 93 127-220 28-139 (355)
342 PRK14176 bifunctional 5,10-met 95.1 0.056 1.2E-06 53.3 6.8 73 126-233 163-236 (287)
343 TIGR01318 gltD_gamma_fam gluta 95.1 0.075 1.6E-06 56.0 8.2 35 126-162 140-174 (467)
344 PRK12769 putative oxidoreducta 95.0 0.054 1.2E-06 59.5 7.3 35 126-162 326-360 (654)
345 TIGR03736 PRTRC_ThiF PRTRC sys 95.0 0.12 2.6E-06 49.9 8.8 39 124-162 8-55 (244)
346 PRK06847 hypothetical protein; 95.0 0.027 5.9E-07 56.8 4.5 37 124-162 1-37 (375)
347 PRK14190 bifunctional 5,10-met 94.9 0.069 1.5E-06 52.6 7.0 73 126-233 157-230 (284)
348 PRK08163 salicylate hydroxylas 94.9 0.03 6.5E-07 57.0 4.7 36 126-163 3-38 (396)
349 KOG2741 Dimeric dihydrodiol de 94.9 0.15 3.3E-06 51.1 9.4 85 127-221 6-94 (351)
350 PRK06567 putative bifunctional 94.9 0.075 1.6E-06 60.4 8.0 35 125-161 381-415 (1028)
351 PRK00141 murD UDP-N-acetylmura 94.9 0.097 2.1E-06 55.2 8.5 39 127-167 15-53 (473)
352 PRK01438 murD UDP-N-acetylmura 94.9 0.1 2.2E-06 54.9 8.7 34 127-162 16-49 (480)
353 PRK12550 shikimate 5-dehydroge 94.9 0.095 2.1E-06 51.4 7.8 66 128-209 123-188 (272)
354 PRK14183 bifunctional 5,10-met 94.9 0.062 1.4E-06 52.8 6.4 73 126-233 156-229 (281)
355 COG1063 Tdh Threonine dehydrog 94.9 0.13 2.9E-06 52.1 9.1 92 129-229 171-265 (350)
356 PRK00961 H(2)-dependent methyl 94.8 1.6 3.5E-05 42.7 15.7 163 185-360 127-303 (342)
357 PRK06753 hypothetical protein; 94.8 0.034 7.4E-07 56.1 4.6 34 128-163 1-34 (373)
358 PRK14173 bifunctional 5,10-met 94.8 0.068 1.5E-06 52.7 6.4 72 126-232 154-226 (287)
359 TIGR01019 sucCoAalpha succinyl 94.7 0.25 5.4E-06 48.8 10.2 92 126-238 5-100 (286)
360 PRK14186 bifunctional 5,10-met 94.6 0.082 1.8E-06 52.4 6.5 73 126-233 157-230 (297)
361 PRK12814 putative NADPH-depend 94.6 0.082 1.8E-06 58.1 7.2 35 126-162 192-226 (652)
362 PRK14169 bifunctional 5,10-met 94.5 0.083 1.8E-06 52.0 6.4 72 126-232 155-227 (282)
363 TIGR03466 HpnA hopanoid-associ 94.5 0.027 5.9E-07 55.3 3.1 71 128-207 1-72 (328)
364 PRK14172 bifunctional 5,10-met 94.5 0.086 1.9E-06 51.8 6.4 72 126-232 157-229 (278)
365 PLN02427 UDP-apiose/xylose syn 94.5 0.07 1.5E-06 54.4 6.0 79 127-207 14-94 (386)
366 PRK00676 hemA glutamyl-tRNA re 94.5 0.11 2.4E-06 52.4 7.2 36 127-163 174-209 (338)
367 PRK07877 hypothetical protein; 94.4 0.079 1.7E-06 58.7 6.6 93 126-220 106-217 (722)
368 PRK14177 bifunctional 5,10-met 94.4 0.092 2E-06 51.7 6.4 72 126-232 158-230 (284)
369 cd05211 NAD_bind_Glu_Leu_Phe_V 94.4 0.16 3.4E-06 48.2 7.8 96 127-236 23-130 (217)
370 PRK07878 molybdopterin biosynt 94.4 0.1 2.2E-06 53.8 7.1 93 127-220 42-153 (392)
371 PRK14166 bifunctional 5,10-met 94.4 0.094 2E-06 51.6 6.4 73 126-233 156-229 (282)
372 PF03720 UDPG_MGDP_dh_C: UDP-g 94.4 0.22 4.9E-06 41.5 7.9 84 138-234 18-102 (106)
373 cd01076 NAD_bind_1_Glu_DH NAD( 94.4 0.19 4.1E-06 48.0 8.4 96 127-236 31-139 (227)
374 PRK05868 hypothetical protein; 94.4 0.045 9.8E-07 55.7 4.4 35 127-163 1-35 (372)
375 PLN02520 bifunctional 3-dehydr 94.4 0.15 3.3E-06 54.7 8.5 43 127-171 379-421 (529)
376 TIGR01373 soxB sarcosine oxida 94.4 0.056 1.2E-06 55.4 5.1 46 111-162 18-65 (407)
377 PRK14180 bifunctional 5,10-met 94.4 0.098 2.1E-06 51.5 6.5 72 126-232 157-229 (282)
378 PRK14170 bifunctional 5,10-met 94.3 0.097 2.1E-06 51.5 6.3 72 126-232 156-228 (284)
379 PRK08374 homoserine dehydrogen 94.3 0.082 1.8E-06 53.4 5.9 106 127-237 2-126 (336)
380 PLN02516 methylenetetrahydrofo 94.3 0.11 2.4E-06 51.5 6.6 73 126-233 166-239 (299)
381 PRK12771 putative glutamate sy 94.2 0.11 2.4E-06 56.0 7.2 34 126-161 136-169 (564)
382 COG1832 Predicted CoA-binding 94.2 0.37 8E-06 42.2 8.9 96 123-240 12-111 (140)
383 PRK00421 murC UDP-N-acetylmura 94.2 0.13 2.8E-06 54.0 7.4 65 127-206 7-73 (461)
384 PRK07236 hypothetical protein; 94.2 0.061 1.3E-06 54.8 4.8 34 127-162 6-39 (386)
385 PF01494 FAD_binding_3: FAD bi 94.2 0.06 1.3E-06 53.0 4.7 33 128-162 2-34 (356)
386 PLN02662 cinnamyl-alcohol dehy 94.1 0.12 2.5E-06 50.9 6.6 36 127-164 4-40 (322)
387 cd05312 NAD_bind_1_malic_enz N 94.1 0.43 9.4E-06 46.9 10.4 101 127-237 25-144 (279)
388 PRK14187 bifunctional 5,10-met 94.1 0.12 2.5E-06 51.2 6.4 72 126-232 159-231 (294)
389 PRK07411 hypothetical protein; 94.1 0.17 3.6E-06 52.3 7.9 94 126-220 37-149 (390)
390 COG5495 Uncharacterized conser 94.1 2 4.4E-05 41.0 14.2 93 126-237 9-102 (289)
391 cd01484 E1-2_like Ubiquitin ac 94.1 0.15 3.3E-06 48.9 7.0 92 129-221 1-113 (234)
392 cd01491 Ube1_repeat1 Ubiquitin 94.1 0.69 1.5E-05 45.7 11.8 35 127-162 19-53 (286)
393 TIGR01723 hmd_TIGR 5,10-methen 94.1 2.8 6.1E-05 41.2 15.4 165 185-360 125-301 (340)
394 PRK09242 tropinone reductase; 94.0 0.57 1.2E-05 44.5 11.0 42 127-170 9-51 (257)
395 PF13450 NAD_binding_8: NAD(P) 94.0 0.08 1.7E-06 40.6 4.1 30 132-163 1-30 (68)
396 PRK14182 bifunctional 5,10-met 94.0 0.13 2.8E-06 50.6 6.6 72 126-232 156-228 (282)
397 PRK09186 flagellin modificatio 94.0 0.5 1.1E-05 44.6 10.5 43 126-170 3-46 (256)
398 PRK12779 putative bifunctional 94.0 0.12 2.6E-06 59.1 7.2 35 126-162 305-339 (944)
399 PLN02214 cinnamoyl-CoA reducta 94.0 0.12 2.7E-06 51.8 6.6 77 127-208 10-90 (342)
400 PLN03209 translocon at the inn 94.0 0.11 2.4E-06 55.9 6.5 43 126-170 79-122 (576)
401 PF14833 NAD_binding_11: NAD-b 94.0 0.051 1.1E-06 46.4 3.3 65 328-392 2-72 (122)
402 PRK07588 hypothetical protein; 94.0 0.061 1.3E-06 54.8 4.4 34 128-163 1-34 (391)
403 PRK07454 short chain dehydroge 94.0 0.48 1E-05 44.4 10.2 43 126-170 5-48 (241)
404 PRK02472 murD UDP-N-acetylmura 94.0 0.19 4.2E-06 52.2 8.2 34 127-162 5-38 (447)
405 COG0493 GltD NADPH-dependent g 94.0 0.13 2.9E-06 54.1 6.9 34 127-162 123-156 (457)
406 PRK02006 murD UDP-N-acetylmura 93.9 0.18 3.9E-06 53.5 8.0 68 127-206 7-76 (498)
407 PLN02897 tetrahydrofolate dehy 93.9 0.12 2.5E-06 52.2 6.1 72 126-232 213-285 (345)
408 PRK05653 fabG 3-ketoacyl-(acyl 93.9 0.47 1E-05 44.2 10.0 41 127-169 5-46 (246)
409 PRK12429 3-hydroxybutyrate deh 93.9 0.48 1E-05 44.6 10.2 41 127-169 4-45 (258)
410 PRK01390 murD UDP-N-acetylmura 93.9 0.19 4.1E-06 52.7 8.1 44 127-172 9-52 (460)
411 PTZ00188 adrenodoxin reductase 93.9 0.1 2.2E-06 55.3 5.9 84 126-211 38-138 (506)
412 PRK10538 malonic semialdehyde 93.9 0.56 1.2E-05 44.4 10.7 41 128-170 1-42 (248)
413 PRK14193 bifunctional 5,10-met 93.9 0.13 2.8E-06 50.7 6.2 72 126-232 157-231 (284)
414 PRK14171 bifunctional 5,10-met 93.9 0.14 3E-06 50.5 6.5 72 126-232 158-230 (288)
415 PLN02616 tetrahydrofolate dehy 93.9 0.12 2.5E-06 52.5 6.0 72 126-232 230-302 (364)
416 PF03949 Malic_M: Malic enzyme 93.9 0.25 5.3E-06 48.0 8.0 102 127-237 25-145 (255)
417 COG0665 DadA Glycine/D-amino a 93.8 0.08 1.7E-06 53.4 4.9 35 126-162 3-37 (387)
418 PRK07538 hypothetical protein; 93.8 0.068 1.5E-06 55.1 4.5 34 128-163 1-34 (413)
419 cd01489 Uba2_SUMO Ubiquitin ac 93.8 0.13 2.9E-06 51.4 6.3 91 129-220 1-111 (312)
420 PRK08340 glucose-1-dehydrogena 93.8 0.51 1.1E-05 44.9 10.3 41 128-170 1-42 (259)
421 PRK15181 Vi polysaccharide bio 93.8 0.12 2.7E-06 51.9 6.2 41 120-162 8-49 (348)
422 PLN03075 nicotianamine synthas 93.8 0.64 1.4E-05 46.2 11.0 102 126-232 123-232 (296)
423 PLN02657 3,8-divinyl protochlo 93.8 0.067 1.5E-06 55.0 4.2 39 124-164 57-96 (390)
424 PRK14181 bifunctional 5,10-met 93.7 0.15 3.3E-06 50.2 6.4 74 126-232 152-228 (287)
425 PRK07326 short chain dehydroge 93.7 0.52 1.1E-05 44.0 9.8 41 128-170 7-48 (237)
426 PF01266 DAO: FAD dependent ox 93.7 0.1 2.2E-06 51.5 5.2 31 129-161 1-31 (358)
427 cd01488 Uba3_RUB Ubiquitin act 93.7 0.23 5E-06 49.2 7.6 32 129-161 1-32 (291)
428 TIGR03649 ergot_EASG ergot alk 93.6 0.065 1.4E-06 52.0 3.7 34 129-164 1-35 (285)
429 PRK07364 2-octaprenyl-6-methox 93.6 0.08 1.7E-06 54.3 4.4 36 125-162 16-51 (415)
430 PRK06182 short chain dehydroge 93.6 0.16 3.5E-06 48.8 6.3 42 127-170 3-45 (273)
431 TIGR01745 asd_gamma aspartate- 93.5 0.55 1.2E-05 48.0 10.2 93 128-234 1-98 (366)
432 COG0654 UbiH 2-polyprenyl-6-me 93.5 0.092 2E-06 53.7 4.7 33 127-161 2-34 (387)
433 PRK08773 2-octaprenyl-3-methyl 93.5 0.091 2E-06 53.6 4.6 34 127-162 6-39 (392)
434 PLN02650 dihydroflavonol-4-red 93.5 0.19 4.1E-06 50.4 6.9 79 127-207 5-85 (351)
435 PRK14184 bifunctional 5,10-met 93.5 0.19 4.2E-06 49.5 6.6 73 126-233 156-233 (286)
436 PRK14174 bifunctional 5,10-met 93.4 0.21 4.6E-06 49.5 6.9 73 126-233 158-235 (295)
437 KOG0023 Alcohol dehydrogenase, 93.4 0.22 4.8E-06 49.6 6.9 45 126-172 181-226 (360)
438 cd00762 NAD_bind_malic_enz NAD 93.4 0.45 9.7E-06 46.1 8.9 101 128-237 26-145 (254)
439 PRK05732 2-octaprenyl-6-methox 93.4 0.099 2.1E-06 53.1 4.7 34 126-161 2-38 (395)
440 PRK12939 short chain dehydroge 93.4 0.68 1.5E-05 43.4 10.2 41 127-169 7-48 (250)
441 PRK05866 short chain dehydroge 93.4 0.67 1.5E-05 45.5 10.4 42 127-170 40-82 (293)
442 PRK07494 2-octaprenyl-6-methox 93.4 0.095 2.1E-06 53.2 4.5 33 128-162 8-40 (388)
443 TIGR03219 salicylate_mono sali 93.3 0.091 2E-06 54.1 4.4 35 128-163 1-35 (414)
444 PRK05993 short chain dehydroge 93.3 0.21 4.6E-06 48.3 6.8 42 127-170 4-46 (277)
445 PRK07231 fabG 3-ketoacyl-(acyl 93.3 0.76 1.6E-05 43.1 10.4 42 127-170 5-47 (251)
446 PRK01581 speE spermidine synth 93.3 2.7 5.8E-05 43.0 14.6 105 126-233 150-268 (374)
447 PRK12810 gltD glutamate syntha 93.2 0.26 5.6E-06 51.9 7.7 35 126-162 142-176 (471)
448 PRK07774 short chain dehydroge 93.2 0.72 1.6E-05 43.3 10.1 41 127-169 6-47 (250)
449 PRK08849 2-octaprenyl-3-methyl 93.2 0.11 2.3E-06 53.1 4.6 33 128-162 4-36 (384)
450 PRK11259 solA N-methyltryptoph 93.2 0.11 2.4E-06 52.3 4.7 33 128-162 4-36 (376)
451 PRK05875 short chain dehydroge 93.2 0.91 2E-05 43.5 10.8 41 127-169 7-48 (276)
452 PLN02172 flavin-containing mon 93.2 0.1 2.3E-06 54.9 4.5 37 125-163 8-44 (461)
453 PRK09853 putative selenate red 93.1 0.25 5.5E-06 56.6 7.8 35 126-162 538-572 (1019)
454 COG0499 SAM1 S-adenosylhomocys 93.1 0.23 4.9E-06 50.2 6.4 93 120-231 202-294 (420)
455 cd08237 ribitol-5-phosphate_DH 93.1 0.79 1.7E-05 45.9 10.6 90 127-231 164-254 (341)
456 PRK14168 bifunctional 5,10-met 93.1 0.24 5.2E-06 49.1 6.6 74 126-232 160-236 (297)
457 COG0190 FolD 5,10-methylene-te 93.1 0.21 4.5E-06 49.0 6.1 72 126-232 155-227 (283)
458 PRK11728 hydroxyglutarate oxid 93.0 0.13 2.7E-06 52.7 4.9 34 127-162 2-37 (393)
459 PRK08013 oxidoreductase; Provi 93.0 0.11 2.4E-06 53.2 4.5 34 128-163 4-37 (400)
460 PLN02896 cinnamyl-alcohol dehy 93.0 0.23 5.1E-06 49.8 6.7 42 126-169 9-51 (353)
461 PF00185 OTCace: Aspartate/orn 93.0 0.64 1.4E-05 41.7 8.8 73 127-209 2-83 (158)
462 PRK06124 gluconate 5-dehydroge 93.0 0.92 2E-05 42.9 10.5 42 127-170 11-53 (256)
463 PRK06617 2-octaprenyl-6-methox 92.9 0.12 2.6E-06 52.5 4.6 33 127-161 1-33 (374)
464 PRK06949 short chain dehydroge 92.9 1 2.2E-05 42.6 10.6 42 127-170 9-51 (258)
465 COG0771 MurD UDP-N-acetylmuram 92.8 0.18 3.9E-06 52.8 5.6 36 127-164 7-42 (448)
466 PRK07045 putative monooxygenas 92.8 0.13 2.7E-06 52.4 4.5 36 126-163 4-39 (388)
467 PRK08251 short chain dehydroge 92.8 1.2 2.6E-05 41.8 10.9 42 127-170 2-44 (248)
468 COG0026 PurK Phosphoribosylami 92.7 0.41 8.8E-06 48.6 7.8 77 127-218 1-84 (375)
469 PRK13394 3-hydroxybutyrate deh 92.7 0.84 1.8E-05 43.1 9.8 42 127-170 7-49 (262)
470 PRK05854 short chain dehydroge 92.7 1.1 2.4E-05 44.3 11.1 41 127-169 14-55 (313)
471 PRK08017 oxidoreductase; Provi 92.7 0.28 6.1E-06 46.3 6.5 41 128-170 3-44 (256)
472 PRK04308 murD UDP-N-acetylmura 92.7 0.71 1.5E-05 48.1 10.0 35 127-163 5-39 (445)
473 PRK06197 short chain dehydroge 92.7 1.1 2.4E-05 43.9 10.9 40 127-168 16-56 (306)
474 KOG0399 Glutamate synthase [Am 92.6 0.37 8.1E-06 55.0 7.9 101 94-209 1759-1880(2142)
475 PRK06475 salicylate hydroxylas 92.6 0.13 2.8E-06 52.8 4.2 34 128-163 3-36 (400)
476 PRK08850 2-octaprenyl-6-methox 92.6 0.15 3.2E-06 52.3 4.7 33 127-161 4-36 (405)
477 TIGR01377 soxA_mon sarcosine o 92.6 0.14 3E-06 51.7 4.4 32 129-162 2-33 (380)
478 KOG1399 Flavin-containing mono 92.6 0.12 2.5E-06 54.3 3.9 35 127-163 6-40 (448)
479 PRK05884 short chain dehydroge 92.6 0.29 6.3E-06 45.9 6.3 41 128-170 1-42 (223)
480 cd08230 glucose_DH Glucose deh 92.6 0.89 1.9E-05 45.6 10.3 91 127-231 173-267 (355)
481 smart00846 Gp_dh_N Glyceraldeh 92.6 1.6 3.5E-05 38.8 10.7 42 128-170 1-44 (149)
482 PRK07831 short chain dehydroge 92.6 1.2 2.6E-05 42.4 10.7 41 127-169 17-59 (262)
483 PRK07523 gluconate 5-dehydroge 92.6 1 2.2E-05 42.7 10.1 41 127-169 10-51 (255)
484 PLN02780 ketoreductase/ oxidor 92.5 0.74 1.6E-05 46.0 9.5 42 127-170 53-95 (320)
485 COG0702 Predicted nucleoside-d 92.5 0.29 6.4E-06 46.5 6.4 71 128-208 1-72 (275)
486 PRK06180 short chain dehydroge 92.5 0.31 6.7E-06 47.1 6.6 43 126-170 3-46 (277)
487 PRK14185 bifunctional 5,10-met 92.5 0.28 6.2E-06 48.5 6.2 74 126-232 156-232 (293)
488 PRK13984 putative oxidoreducta 92.5 0.41 8.9E-06 52.0 8.1 35 126-162 282-316 (604)
489 TIGR02360 pbenz_hydroxyl 4-hyd 92.4 0.16 3.5E-06 52.0 4.7 35 127-163 2-36 (390)
490 PRK14573 bifunctional D-alanyl 92.4 0.34 7.4E-06 54.7 7.6 67 125-206 2-70 (809)
491 PRK09880 L-idonate 5-dehydroge 92.4 1.2 2.7E-05 44.4 10.9 91 127-232 170-265 (343)
492 PLN02989 cinnamyl-alcohol dehy 92.4 0.34 7.3E-06 47.9 6.8 37 127-165 5-42 (325)
493 PRK07062 short chain dehydroge 92.4 1.3 2.9E-05 42.1 10.8 41 127-169 8-49 (265)
494 PRK10637 cysG siroheme synthas 92.4 2.1 4.5E-05 45.1 13.0 74 127-213 12-86 (457)
495 PRK12828 short chain dehydroge 92.3 1.4 3E-05 40.8 10.6 39 127-167 7-46 (239)
496 PF00743 FMO-like: Flavin-bind 92.3 0.14 3.1E-06 54.9 4.2 34 128-163 2-35 (531)
497 PRK07102 short chain dehydroge 92.3 0.34 7.5E-06 45.5 6.5 41 127-169 1-42 (243)
498 PRK06194 hypothetical protein; 92.3 1.3 2.8E-05 42.7 10.7 41 127-169 6-47 (287)
499 PRK02705 murD UDP-N-acetylmura 92.3 0.48 1E-05 49.5 8.1 32 129-162 2-33 (459)
500 PRK07890 short chain dehydroge 92.3 1.2 2.6E-05 42.0 10.3 42 127-170 5-47 (258)
No 1
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.7e-62 Score=476.63 Aligned_cols=290 Identities=44% Similarity=0.635 Sum_probs=282.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
+|||+|||+|+||+++|..|+++| |+|++|.|+++.+++|++.+.|.+|+|+..+|.++.+++|++++++++|+|+++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng--~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG--HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC--CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 479999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCH
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~ 286 (420)
||++.++++++++.++++++.++|+++||+++++.+++++++.+.++. ..+++++||+++.|++++.|+.+++++.|.
T Consensus 79 vPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~ 156 (329)
T COG0240 79 VPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQ 156 (329)
T ss_pred CChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCC--CeEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence 999999999999999999999999999999999999999999999986 348999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (420)
Q Consensus 287 e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~ 366 (420)
+.+++++.+|.+.+|++|.++|+.|+|+++++||++|+++|+++|+.+|+|+++++++++++||.+++.++|.+++||++
T Consensus 157 ~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~g 236 (329)
T COG0240 157 EAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMG 236 (329)
T ss_pred HHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL 420 (420)
Q Consensus 367 l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~ 420 (420)
++|+|||++||++.+||||++|+.|+||++++|++++++|++||+.|++++++|
T Consensus 237 LsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~l 290 (329)
T COG0240 237 LSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYEL 290 (329)
T ss_pred cccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999975
No 2
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-56 Score=445.86 Aligned_cols=292 Identities=28% Similarity=0.424 Sum_probs=273.8
Q ss_pred hcCCCeEEEEcccHHHHHHHHHHHhcC-----CCCeEEEEeCCHH-----HHHHHHHhcCCCCCCCCCCCCCceEEeCCH
Q 014700 124 LERTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDA 193 (420)
Q Consensus 124 ~~~~mkI~IIGaGamG~alA~~La~aG-----~~~~V~l~~r~~~-----~~~~i~~~g~~~~~l~~~~l~~~i~a~td~ 193 (420)
+.+.|||+|||+|+||+++|..|+++| ++|+|.+|.|+++ .++.|++.|.|.+|+|++++|+++.+++|+
T Consensus 8 ~~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl 87 (365)
T PTZ00345 8 RCGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDL 87 (365)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence 334579999999999999999999986 2379999999986 489999999999999999999999999999
Q ss_pred HHhccCCcEEEEccChhhHHHHHHHhhh--cCCCCCeEEEeccCCCcchh--hhHHHHHHHHhCCCCCCeEEEECcccHH
Q 014700 194 KTALLGADYCLHAMPVQFSSSFLEGISD--YVDPGLPFISLSKGLELNTL--RMMSQIIPQALRNPRQPFIALSGPSFAL 269 (420)
Q Consensus 194 ~eal~~aDiVIlaVp~~~l~~vl~~i~~--~l~~~~iVVs~snGi~~~t~--~~~se~l~~~lg~~~~~~~vl~GP~~a~ 269 (420)
+++++++|+||++||++.++++++++.+ +++++.++|+++||++.++. .++++++.+.++. ++.+++||+++.
T Consensus 88 ~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~---~~~~LsGPs~A~ 164 (365)
T PTZ00345 88 KEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI---PCCALSGANVAN 164 (365)
T ss_pred HHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC---CeEEEECCCHHH
Confidence 9999999999999999999999999998 78778899999999998765 6799999998863 688999999999
Q ss_pred HHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 014700 270 ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE 349 (420)
Q Consensus 270 ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E 349 (420)
|++++.|+.+++++.|.+.++.++++|++.+|+++.++|+.|+|+++++||++|+++|+++++++|+|+++++++++++|
T Consensus 165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC--CChhhhhhccccchhhhhhcccCCCCccccccccCC---CChHHHHHHc--CCcccccchhhhhhcC
Q 014700 350 IRWLATKMG--AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG---EKLDDILSSM--NQVLVNPSMQPLLGKL 420 (420)
Q Consensus 350 ~~~lA~a~G--i~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g---~~~~~~~~~~--~~~~eG~~t~~~~~~~ 420 (420)
|.++++++| .+++||++++|+|||++||++ ||||++|+.|++| ++++++++++ ++++||+.|++.+|+|
T Consensus 245 m~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l 320 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEV 320 (365)
T ss_pred HHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHH
Confidence 999999997 499999999999999999998 9999999999987 5899999988 8999999999999875
No 3
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=1e-55 Score=441.85 Aligned_cols=287 Identities=33% Similarity=0.460 Sum_probs=273.6
Q ss_pred eEEEEcccHHHHHHHHHHHhcC------CCCeEEEEeC-----CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc
Q 014700 129 KVVVLGGGSFGTAMAAHVANKK------SQLKVYMLMR-----DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG------~~~~V~l~~r-----~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal 197 (420)
||+|||+|+||+++|..|+++| ++|+|++|.| +++..+.+++.+.+.+|+|++.+|+++++++|+++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999986 4489999999 6778889999999999999999999999999999999
Q ss_pred cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc--hhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcC
Q 014700 198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN--TLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKL 275 (420)
Q Consensus 198 ~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~--t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~ 275 (420)
+++|+||++||++.++++++++.+++++++++|+++||++.+ +..++++++.+.++. ++.+++||+++.|++++.
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~---~~~~lsGP~~A~Eva~~~ 157 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI---PCGVLSGANLANEVAKEK 157 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC---CeEEeeCcchHHHHHcCC
Confidence 999999999999999999999999999889999999999988 888999999998853 688999999999999999
Q ss_pred CeEEEEecCC----HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Q 014700 276 PTAMVVASKD----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (420)
Q Consensus 276 ~t~i~ia~~d----~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~ 351 (420)
|+.+++++.+ .+.++.++++|++.+|+++.++|+.|+|+++++||++|+++|+++++.+|+|+++++++++++||.
T Consensus 158 pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~ 237 (342)
T TIGR03376 158 FSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMI 237 (342)
T ss_pred CceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999988 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChh--hhhhccccchhhhhhcccCCCCccccccccC-CCChHHHHHH--cCCcccccchhhhhhcC
Q 014700 352 WLATKMGAKPA--TITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSS--MNQVLVNPSMQPLLGKL 420 (420)
Q Consensus 352 ~lA~a~Gi~~~--t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~-g~~~~~~~~~--~~~~~eG~~t~~~~~~~ 420 (420)
++++++|.+++ ||++++|+||+++||++ ||||++|+.|+| |+++++++++ +++++||+.|++.+++|
T Consensus 238 ~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l 309 (342)
T TIGR03376 238 KFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHEL 309 (342)
T ss_pred HHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHH
Confidence 99999999888 99999999999999998 999999999999 9999999999 89999999999999875
No 4
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-52 Score=421.96 Aligned_cols=290 Identities=38% Similarity=0.578 Sum_probs=273.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCC-CCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~-~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.+|||+|||+|+||+++|..|+++| +|++|.|++++++.+++.|.+..|++ +..++.++.+++|++++++++|+||
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi 82 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV 82 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence 3689999999999999999999987 58899999999999999888888888 7778888889999988899999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~ 284 (420)
++||+++++++++++.+++++++++|+++||++.++.+.+++.+.+.++. ..+.++.||+++.++..+.++.+++++.
T Consensus 83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~ 160 (341)
T PRK12439 83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMP 160 (341)
T ss_pred EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeC
Confidence 99999999999999999999888999999999998888899999888764 3567899999999999999998889998
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 014700 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364 (420)
Q Consensus 285 d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~ 364 (420)
+.+..+.++++|++.+|+++.++|+.|++|++++||++++++|+++++.+++|+.++++.++++||.++++++|++++||
T Consensus 161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~ 240 (341)
T PRK12439 161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF 240 (341)
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL 420 (420)
Q Consensus 365 ~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~ 420 (420)
++++|+||+++||++..||||++|+.|++|++++++++++++++||+.|++.+++|
T Consensus 241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~ 296 (341)
T PRK12439 241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEF 296 (341)
T ss_pred cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999875
No 5
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.4e-45 Score=363.73 Aligned_cols=289 Identities=37% Similarity=0.569 Sum_probs=265.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEEc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIla 206 (420)
|||+|||+|+||+++|..|+++| ++|++|+|++++++.+++.+.+.+++++..++.++.+++++++++ .++|+||++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g--~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK--ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 68999999999999999999998 999999999999999998877777788888888888988988876 589999999
Q ss_pred cChhhHHHHHHHhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCC
Q 014700 207 MPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~-~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d 285 (420)
||+++++++++++.+ ++.+++.||+++||++.++...+.+.+.+.++. .++.++.||+++.+++.+.++.+.+++.+
T Consensus 79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 999999999999998 888888899999999887666777888888765 46778899999999888777778888888
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCC--Chhh
Q 014700 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA--KPAT 363 (420)
Q Consensus 286 ~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi--~~~t 363 (420)
.+..++++++|+..+++++.++|+.+.+|+|++||+++++.|+..++.+++|...+++.++++|+.++++++|+ ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 88889999999999999999999999999999999999999999999999899999999999999999999998 8999
Q ss_pred hhhccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700 364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL 420 (420)
Q Consensus 364 ~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~ 420 (420)
+++++|+||+++||++..+||+++|+.|++|..++++..+.++++||+.+++.++++
T Consensus 237 ~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~ 293 (326)
T PRK14620 237 LIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISL 293 (326)
T ss_pred hhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHH
Confidence 999999999999999888999999999999999999999999999999999988764
No 6
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=100.00 E-value=4.6e-44 Score=346.12 Aligned_cols=290 Identities=36% Similarity=0.537 Sum_probs=261.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcC-----CCCeEEEEeCCHH-------HHHHHHHhcCCCCCCCCCCCCCceEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-------VCQSINEKHCNCRYFPEQKLPENVIATTDA 193 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG-----~~~~V~l~~r~~~-------~~~~i~~~g~~~~~l~~~~l~~~i~a~td~ 193 (420)
...||+|||+|+||+++|+.+.++- ++.+|.+|.+.++ ..+-||++|.|.+|+|++++|.++.+++|+
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 3579999999999999999998762 2358999986542 346678889999999999999999999999
Q ss_pred HHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc----hhhhHHHHHHHHhCCCCCCeEEEECcccHH
Q 014700 194 KTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN----TLRMMSQIIPQALRNPRQPFIALSGPSFAL 269 (420)
Q Consensus 194 ~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~----t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ 269 (420)
.+++++||++|+.+|.+.+..++++|..+++++...||++||++.. ..+.++++|.+.+|. ++.+++||+.|.
T Consensus 100 ~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI---~~~vL~GaNiA~ 176 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGI---PCSVLMGANIAS 176 (372)
T ss_pred HHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCC---CceeecCCchHH
Confidence 9999999999999999999999999999999999999999999853 257899999999986 578999999999
Q ss_pred HHhhcCCeEEEEecCCHHHHH-HHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 014700 270 ELMNKLPTAMVVASKDRKLAN-AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS 348 (420)
Q Consensus 270 ev~~g~~t~i~ia~~d~e~~~-~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~ 348 (420)
|+++...+...+++.++.... .+.++|++.+|++...+|+.++|++++|||++|+++|+.+|+.+++|+++++++.++.
T Consensus 177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~ 256 (372)
T KOG2711|consen 177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLL 256 (372)
T ss_pred HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHH
Confidence 999998888888887655444 5999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CC-ChhhhhhccccchhhhhhcccCCCCccccccccCC-CChHHHHHHc--CCcccccchhhhhhcC
Q 014700 349 EIRWLATKM-GA-KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSM--NQVLVNPSMQPLLGKL 420 (420)
Q Consensus 349 E~~~lA~a~-Gi-~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g-~~~~~~~~~~--~~~~eG~~t~~~~~~~ 420 (420)
||..+++.+ .. .++++++.||++|+++||++ +||+.++..+.|+ +++++..+++ +|.+||+.|++.+|++
T Consensus 257 Em~~F~~~f~p~~~~~t~~escGvaDlitTC~g--GRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~ 331 (372)
T KOG2711|consen 257 EMIKFATHFYPGSKPTTFFESCGVADLITTCYG--GRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYEL 331 (372)
T ss_pred HHHHHHHHhCCCCCcceeeccccHHHHHHHHhc--CccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHH
Confidence 999999886 44 89999999999999999987 8999999988766 8899888776 7899999999999975
No 7
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-41 Score=334.37 Aligned_cols=286 Identities=35% Similarity=0.519 Sum_probs=252.5
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.++|||+|||+|+||++||..|+++| |+|++|+|++++.+.+++.+.+..++++..++.++..+++++++++++|+||
T Consensus 2 ~~~m~I~iIG~G~mG~~ia~~L~~~G--~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi 79 (328)
T PRK14618 2 HHGMRVAVLGAGAWGTALAVLAASKG--VPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAV 79 (328)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEE
Confidence 45789999999999999999999998 9999999999999999887766667777777767778889988889999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch--hhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t--~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
+|+|+++++++++.+ +++.++|+++||+.+++ .+.+++.+.+... ..+.++.||+++.++..+.++..+++
T Consensus 80 ~~v~~~~~~~v~~~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~ 152 (328)
T PRK14618 80 VAVPSKALRETLAGL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVA 152 (328)
T ss_pred EECchHHHHHHHHhc----CcCCEEEEEeeccccCCCccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEE
Confidence 999999988877554 46778999999998654 4466666655222 24568899999999988888777788
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (420)
Q Consensus 283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~ 362 (420)
+.+.+.+++++++|+..+++++.++|+.|++|++++||++++++|+..++++++|...+++.++++|+..+++++|++++
T Consensus 153 ~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~ 232 (328)
T PRK14618 153 SPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEA 232 (328)
T ss_pred eCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700 363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL 420 (420)
Q Consensus 363 t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~ 420 (420)
++++++|.||++.||.+..+||+.+|.++.+|+++++.. ...+++||+.+++++++|
T Consensus 233 ~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~-~~~~~~~g~kd~~~~~~l 289 (328)
T PRK14618 233 TFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLE-AGGKVVEGLYTVKALDAW 289 (328)
T ss_pred chhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHH-HcCCEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999888763 347899999999998764
No 8
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=8.5e-41 Score=331.29 Aligned_cols=263 Identities=35% Similarity=0.543 Sum_probs=242.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.|||+|||+|+||++||..|+++| |+|++|+|++. ++++++++++|+||++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G--~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG--HRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 479999999999999999999998 99999999752 2567778899999999
Q ss_pred cChhhHHHHHHHhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCC
Q 014700 207 MPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD 285 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~-l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d 285 (420)
+|+.+++++++++.++ ++++++||+++||+++++...+++.+.+.+.. .++.+++||.++.++..+.++..++++.+
T Consensus 55 vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~ 132 (308)
T PRK14619 55 VSMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRD 132 (308)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCC
Confidence 9999999999998774 67889999999999998777888888777654 36677899999999888888888899999
Q ss_pred HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhh
Q 014700 286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT 365 (420)
Q Consensus 286 ~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~ 365 (420)
.+..++++++|+..+++++.++|+.|++|++++||++++++|+.+++++++|...+++.++++|+.++++++|+++++++
T Consensus 133 ~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~ 212 (308)
T PRK14619 133 LAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFY 212 (308)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700 366 GLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL 420 (420)
Q Consensus 366 ~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~ 420 (420)
+++|+||+.+||.+..+|||++|+.+++|++++++.+++++++||+.+++.++++
T Consensus 213 ~~~g~gd~~~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~ 267 (308)
T PRK14619 213 GLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQL 267 (308)
T ss_pred cccchhhhheeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998874
No 9
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.4e-39 Score=319.83 Aligned_cols=291 Identities=43% Similarity=0.650 Sum_probs=262.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
||||+|||+|+||+++|..|+++| ++|++|+|++++++.+++.+....++++..++.++.++++++++++++|+||+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNG--HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 579999999999999999999998 899999999999999988776666666666666777888888888899999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCH
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~ 286 (420)
||+++++++++++.++++++++||+++||+.+++...+++.+.+.++.. ....++.||+++.+...+.++.+.+++.+.
T Consensus 79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 79 VPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 9999999999999998888999999999999877777888888876531 246788999999888777777777888888
Q ss_pred HHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (420)
Q Consensus 287 e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~ 366 (420)
+.+++++++|+..++++..++|+.+.+|+++++|++++++|..+++++++|...+++..+++|+..+|+++|++++++++
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL 420 (420)
Q Consensus 367 l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~ 420 (420)
+++.||++.+|.+..+||+.+|+.+++|.++++++++++++.||...+++++++
T Consensus 238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~ 291 (325)
T PRK00094 238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYEL 291 (325)
T ss_pred ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHHHH
Confidence 999999999999999999999999999999988888888999999999998763
No 10
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.95 E-value=3.7e-27 Score=211.73 Aligned_cols=156 Identities=42% Similarity=0.605 Sum_probs=139.0
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccC
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp 208 (420)
||+|||+|+||+++|..|+++| ++|++|.|+++.++.+++.+.+..|+++..++.++.+++|++++++++|+||++||
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 7999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHHH
Q 014700 209 VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288 (420)
Q Consensus 209 ~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~ 288 (420)
++.++++++++.+++++++++|+++||++.++...+++++.+.++.. .+++++||++++|++.+.++.+++++.+.+.
T Consensus 79 s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~~ 156 (157)
T PF01210_consen 79 SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEEV 156 (157)
T ss_dssp GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHHH
T ss_pred HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEeccccc
Confidence 99999999999999999999999999998888889999999998863 4899999999999999999999999988764
No 11
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.93 E-value=2.3e-24 Score=209.46 Aligned_cols=225 Identities=19% Similarity=0.199 Sum_probs=180.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
+||+|||+|.||.+||.+|.++| |+|++|+|++++ .+.+.+.| .....++.|+++++|+||+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG--~~v~v~~r~~~ka~~~~~~~G--------------a~~a~s~~eaa~~aDvVitm 64 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG--HEVTVYNRTPEKAAELLAAAG--------------ATVAASPAEAAAEADVVITM 64 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC--CEEEEEeCChhhhhHHHHHcC--------------CcccCCHHHHHHhCCEEEEe
Confidence 58999999999999999999999 999999999988 55555544 34556788899999999999
Q ss_pred cCh-hhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 207 Vp~-~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
|++ .++++++ +.+...+++++++|++++ +++++.+.+++.+++. | ..++..|...........+..++.
T Consensus 65 v~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~~a~~~a~~~~~~-G-----~~~lDAPVsGg~~~A~~GtLtimv 137 (286)
T COG2084 65 LPDDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPETARELAAALAAK-G-----LEFLDAPVSGGVPGAAAGTLTIMV 137 (286)
T ss_pred cCCHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHHHHHHHHHHHHhc-C-----CcEEecCccCCchhhhhCceEEEe
Confidence 995 5699998 457888889999999985 8887766677666553 3 346666666655444445667788
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (420)
Q Consensus 283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~ 362 (420)
+++++.+++++++|+..+.++++..+. | ..+.+|+.+|...+....++.|...++++.|++++
T Consensus 138 GG~~~~f~r~~pvl~~~g~~i~~~G~~-G----------------~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~ 200 (286)
T COG2084 138 GGDAEAFERAKPVLEAMGKNIVHVGPV-G----------------AGQAAKLANNILLAGNIAALAEALALAEKAGLDPD 200 (286)
T ss_pred CCCHHHHHHHHHHHHHhcCceEEECCC-C----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 899999999999999999999988875 3 34455677888888999999999999999999999
Q ss_pred hhhhcc-----ccchhhhhhcccCCCCcccccccc
Q 014700 363 TITGLS-----GTGDIMLTCFVNLSRNRTVGVRLG 392 (420)
Q Consensus 363 t~~~l~-----g~gdl~~t~~~~~sRn~~~G~~l~ 392 (420)
.+++.. +..-+-..+..+..|||++||.+.
T Consensus 201 ~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~ 235 (286)
T COG2084 201 VVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVD 235 (286)
T ss_pred HHHHHHhccccCChHHHhhcchhhcCCCCcchhHH
Confidence 999843 233344445567899999999764
No 12
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=99.91 E-value=3.3e-25 Score=197.01 Aligned_cols=114 Identities=44% Similarity=0.724 Sum_probs=107.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh-hhhhccccchhhhhhcccCCCCc
Q 014700 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA-TITGLSGTGDIMLTCFVNLSRNR 385 (420)
Q Consensus 307 ~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~-t~~~l~g~gdl~~t~~~~~sRn~ 385 (420)
+|++|+|+++++||++|+++|+++++++++|+++++++++++||.++++++|.+++ ||+++||+||+++||++..||||
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~ 80 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNR 80 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcH
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cccccccCC-CChHHHHHHc--CCcccccchhhhhhcC
Q 014700 386 TVGVRLGSG-EKLDDILSSM--NQVLVNPSMQPLLGKL 420 (420)
Q Consensus 386 ~~G~~l~~g-~~~~~~~~~~--~~~~eG~~t~~~~~~~ 420 (420)
++|+.+++| ++++++.+++ ++++||+.|++.+++|
T Consensus 81 ~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l 118 (149)
T PF07479_consen 81 RFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYEL 118 (149)
T ss_dssp HHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHH
Confidence 999999999 9999999998 9999999999999874
No 13
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.89 E-value=4.2e-22 Score=191.18 Aligned_cols=226 Identities=17% Similarity=0.174 Sum_probs=181.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
..++|||||+|+||..|+.+|.++| |.|++|+|+.++++.+.+.|. ++..+|.|+.+++|+||.
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G--~kVtV~dr~~~k~~~f~~~Ga--------------~v~~sPaeVae~sDvvit 97 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAG--YKVTVYDRTKDKCKEFQEAGA--------------RVANSPAEVAEDSDVVIT 97 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcC--CEEEEEeCcHHHHHHHHHhch--------------hhhCCHHHHHhhcCEEEE
Confidence 4689999999999999999999999 999999999999999999764 455689999999999999
Q ss_pred ccCh-hhHHHHHHHhhhc---CCCCCeE-EEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEE
Q 014700 206 AMPV-QFSSSFLEGISDY---VDPGLPF-ISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV 280 (420)
Q Consensus 206 aVp~-~~l~~vl~~i~~~---l~~~~iV-Vs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ 280 (420)
+||+ .+.++++..-... ++++... |.++. +++++...+.+.+... .+-++.+|...........+.++
T Consensus 98 mv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmST-idp~~s~ei~~~i~~~------~~~~vDAPVSGg~~~A~~G~Lti 170 (327)
T KOG0409|consen 98 MVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMST-IDPDTSLEIAKAISNK------GGRFVDAPVSGGVKGAEEGTLTI 170 (327)
T ss_pred EcCChHhhHHHhcCCCcceeeccCCCceEEeccc-cCHHHHHHHHHHHHhC------CCeEEeccccCCchhhhcCeEEE
Confidence 9995 5678877553333 3466655 77764 8887655444444332 34577888877654444556677
Q ss_pred EecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700 281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (420)
Q Consensus 281 ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~ 360 (420)
++++|++.++++.++|+.+|..+++...+ |..+.+|+.+|...+....+++|...+|.++|++
T Consensus 171 magGde~~~~~~~~~~~~mGk~~~~~G~~-----------------GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd 233 (327)
T KOG0409|consen 171 MAGGDEALFEAASPVFKLMGKNVVFLGGV-----------------GNGQAAKLCNNMLLGSSMVGLAEALALADRLGLD 233 (327)
T ss_pred EecCcHHHHHHHHHHHHHhcceEEEeccc-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88899999999999999999887765442 4556677888988899999999999999999999
Q ss_pred hhhhhh-----ccccchhhhhhcccCCCCccccccc
Q 014700 361 PATITG-----LSGTGDIMLTCFVNLSRNRTVGVRL 391 (420)
Q Consensus 361 ~~t~~~-----l~g~gdl~~t~~~~~sRn~~~G~~l 391 (420)
..++++ .|+..++...+..++.|+|..||.+
T Consensus 234 ~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~ 269 (327)
T KOG0409|consen 234 AKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFAL 269 (327)
T ss_pred HHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchH
Confidence 999987 3577788888888999999999864
No 14
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.87 E-value=4.9e-21 Score=188.47 Aligned_cols=220 Identities=19% Similarity=0.241 Sum_probs=162.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV 207 (420)
|||+|||+|+||+++|..|+++| ++|++++|+++..+.+++.|.... +......+..+++++++ +++|+||+|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG--HDVTLVARRGAHLDALNENGLRLE---DGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECChHHHHHHHHcCCccc---CCceeecccCCCChhHc-CCCCEEEEec
Confidence 68999999999999999999998 999999998888888887665331 11111122344566664 8999999999
Q ss_pred ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC------CCeEEEECcccHHHHhhcCCeEEEE
Q 014700 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAMVV 281 (420)
Q Consensus 208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~------~~~~vl~GP~~a~ev~~g~~t~i~i 281 (420)
|+.+++++++++.+++.+++.||+++||+... +.+.+.++... ...+...+|+...+...+ .+.+
T Consensus 75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g---~~~i 145 (304)
T PRK06522 75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGG---RLKI 145 (304)
T ss_pred ccccHHHHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCC---CEEE
Confidence 99999999999999998889999999998754 23334333210 011235567665544332 2344
Q ss_pred ecCC--HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHH
Q 014700 282 ASKD--RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLAT 355 (420)
Q Consensus 282 a~~d--~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~~~E~~~lA~ 355 (420)
+..+ .+..+.+.++|+..++.+..++|+.+.+|.|++.|......+...+...+ ++....++..++.|+.++++
T Consensus 146 g~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 225 (304)
T PRK06522 146 GEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAE 225 (304)
T ss_pred eCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 4332 24478899999999999999999999999999999866665555444433 34567899999999999999
Q ss_pred HcCCChh
Q 014700 356 KMGAKPA 362 (420)
Q Consensus 356 a~Gi~~~ 362 (420)
++|+++.
T Consensus 226 a~G~~~~ 232 (304)
T PRK06522 226 AEGVHLS 232 (304)
T ss_pred HcCCCCC
Confidence 9998753
No 15
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.86 E-value=1.9e-20 Score=184.83 Aligned_cols=225 Identities=14% Similarity=0.179 Sum_probs=162.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|+||+|||+|.||.+||..|+++| ++|++|+|+++.++.+.+.+. ...++++++++++|+||+|
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G--~~V~v~d~~~~~~~~~~~~g~--------------~~~~s~~~~~~~aDvVi~~ 64 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQG--HQLQVFDVNPQAVDALVDKGA--------------TPAASPAQAAAGAEFVITM 64 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcCC--------------cccCCHHHHHhcCCEEEEe
Confidence 369999999999999999999998 999999999999888877542 3345778888999999999
Q ss_pred cChh-hHHHHHH---HhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 207 MPVQ-FSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 207 Vp~~-~l~~vl~---~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
+|+. .+++++. .+.+.+++++++|++++ +.+.+.+.+.+.+.+. | +.++.+|...........+..++.
T Consensus 65 vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT-~~p~~~~~l~~~l~~~-g-----~~~ldapV~g~~~~a~~g~l~~~~ 137 (296)
T PRK15461 65 LPNGDLVRSVLFGENGVCEGLSRDALVIDMST-IHPLQTDKLIADMQAK-G-----FSMMDVPVGRTSDNAITGTLLLLA 137 (296)
T ss_pred cCCHHHHHHHHcCcccHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CcEEEccCCCCHHHHHhCcEEEEE
Confidence 9986 4888874 35566778999999887 4555444555555443 2 235556554432211222444567
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (420)
Q Consensus 283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~ 362 (420)
+++++.+++++++|+..+.++++.+++ |....+|+.+|........++.|+..++++.|++++
T Consensus 138 gg~~~~~~~~~p~l~~~g~~~~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~ 200 (296)
T PRK15461 138 GGTAEQVERATPILMAMGNELINAGGP-----------------GMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFD 200 (296)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 778899999999999998888877764 223345566777777777888999999999999999
Q ss_pred hhhhcc--cc---chhhhhhc-ccCCCCccccccc
Q 014700 363 TITGLS--GT---GDIMLTCF-VNLSRNRTVGVRL 391 (420)
Q Consensus 363 t~~~l~--g~---gdl~~t~~-~~~sRn~~~G~~l 391 (420)
.+++.. +. ..+..... ...+++|..+|.+
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 235 (296)
T PRK15461 201 VALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMI 235 (296)
T ss_pred HHHHHHhcCcccChHHHccccchhccCCCCCCcch
Confidence 988743 21 22221211 3456888888865
No 16
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.86 E-value=1.4e-20 Score=185.56 Aligned_cols=221 Identities=16% Similarity=0.174 Sum_probs=159.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCC-CCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~-~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|||+|||+|+||+++|..|+++| ++|++|+| +++.+.+++.|....... ....+ ....++.+++.+++|+||+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVP--GPVITDPEELTGPFDLVILA 75 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEec-HHHHHHHHhCCeEEEeCCCeEEec--ceeecCHHHccCCCCEEEEE
Confidence 69999999999999999999998 99999999 778888887664332211 11111 23456677766899999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-C-CeE----EEECcccHHHHhhcCCeEEE
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-Q-PFI----ALSGPSFALELMNKLPTAMV 280 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~-~-~~~----vl~GP~~a~ev~~g~~t~i~ 280 (420)
+|+.+++++++++.+++.++++||+++||+... +.+.+.++... . .+. .+.+|+..... ....+.
T Consensus 76 vk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~---~~~~~~ 146 (305)
T PRK12921 76 VKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQL------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQR---ADHRLT 146 (305)
T ss_pred ecccCHHHHHHHHHhhcCCCCEEEEeeCCCChH------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEc---CCCcEE
Confidence 999999999999999888889999999999753 23344443211 0 011 12233332221 122244
Q ss_pred Eec---CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHH
Q 014700 281 VAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWL 353 (420)
Q Consensus 281 ia~---~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~~~E~~~l 353 (420)
++. ...+..+.+.++|+..++.+....|+...+|.|++.|......+...+.+.+ ++....++..+++|+.++
T Consensus 147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v 226 (305)
T PRK12921 147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAV 226 (305)
T ss_pred EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 443 2346678899999999999999999999999999999765555555444432 344568899999999999
Q ss_pred HHHcCCChh
Q 014700 354 ATKMGAKPA 362 (420)
Q Consensus 354 A~a~Gi~~~ 362 (420)
++++|++..
T Consensus 227 ~~a~G~~~~ 235 (305)
T PRK12921 227 ARAEGAPLR 235 (305)
T ss_pred HHHcCCCCC
Confidence 999999743
No 17
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.86 E-value=2.6e-20 Score=186.76 Aligned_cols=224 Identities=20% Similarity=0.290 Sum_probs=160.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC---CCCceEEeCCHHHhccCCcEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPENVIATTDAKTALLGADYC 203 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~---l~~~i~a~td~~eal~~aDiV 203 (420)
+|||+|||+|+||+++|..|+++| |+|++|+|++ ..+.+++.+......++.. .+..+..++++ +++.++|+|
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G--~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG--ADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC--CcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 689999999999999999999998 9999999976 3567777665432222211 12345556666 457899999
Q ss_pred EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-----CCe-EEEECcccHHHHhhcCCe
Q 014700 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-----QPF-IALSGPSFALELMNKLPT 277 (420)
Q Consensus 204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~-----~~~-~vl~GP~~a~ev~~g~~t 277 (420)
|+|||...+.++++.+.+.+.++++|++++||+... +.+.+.++... ..+ ++..||..+.....+.
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~-- 149 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA-- 149 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc--
Confidence 999999999999999999998999999999998753 23444443210 011 2355676654322222
Q ss_pred EEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHH
Q 014700 278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL----GNNSMAALVAQGCSEIRWL 353 (420)
Q Consensus 278 ~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~l----g~N~~~al~~~~~~E~~~l 353 (420)
+.++. .+.++++.++|+..++++++++|+.+..|.|++.|.+ .+.....+..+ .+.....++..++.|+..+
T Consensus 150 -l~~~~--~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~v 225 (341)
T PRK08229 150 -LAIEA--SPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYRRCLALAQREALRV 225 (341)
T ss_pred -eEecC--CchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHH
Confidence 23332 2456899999999999999999999999999999963 32222223222 2334567889999999999
Q ss_pred HHHcCCChhhhhh
Q 014700 354 ATKMGAKPATITG 366 (420)
Q Consensus 354 A~a~Gi~~~t~~~ 366 (420)
|++.|++++.+..
T Consensus 226 a~a~Gi~~~~~~~ 238 (341)
T PRK08229 226 LKAAGIRPARLTP 238 (341)
T ss_pred HHHcCCCccccCC
Confidence 9999999876543
No 18
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.85 E-value=9e-20 Score=187.85 Aligned_cols=236 Identities=20% Similarity=0.187 Sum_probs=174.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC------C-CCceEEeCCHHHhccCC
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA 200 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~------l-~~~i~a~td~~eal~~a 200 (420)
|||+|||+|.||.++|..|+++| |+|++|++++++++.+++ +..+.+.++.. + ..++.++++++++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~a 77 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQEKVDKLNK-GKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDA 77 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHHHHHHhhc-CCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhC
Confidence 68999999999999999999998 999999999999998875 44444444432 1 12367888888888999
Q ss_pred cEEEEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHH-HHHHHHhCCC-CCCeEEEECcccH
Q 014700 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS-QIIPQALRNP-RQPFIALSGPSFA 268 (420)
Q Consensus 201 DiVIlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~s-e~l~~~lg~~-~~~~~vl~GP~~a 268 (420)
|+||+|||+. ++.++++.+.+.++++++||..+ ++.+.+.+.+. +.+.+..|.. ...+.+.++|.++
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~ 156 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL 156 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC
Confidence 9999999965 47888888988888899888776 68777655554 3444322321 2356788999888
Q ss_pred HHHhh----cCCeEEEEecCCHHHHHHHHHHHhcCC-ceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 014700 269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV 343 (420)
Q Consensus 269 ~ev~~----g~~t~i~ia~~d~e~~~~l~~ll~~~g-~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~ 343 (420)
.+... ..+..++++ .+++..++++++|+..+ ..++...++...+..|++. |...+..
T Consensus 157 ~~G~~~~~~~~~~~iv~G-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~-----------------N~~~a~~ 218 (411)
T TIGR03026 157 REGNAVHDLLNPDRIVGG-ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAE-----------------NTFRAVK 218 (411)
T ss_pred CCCChhhhhcCCCEEEEe-CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHH-----------------HHHHHHH
Confidence 65221 233344444 68889999999999876 4667778887777766554 4455666
Q ss_pred HHHHHHHHHHHHHcCCChhhhhhccccchhhhhhcccCCCCccccccc
Q 014700 344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRL 391 (420)
Q Consensus 344 ~~~~~E~~~lA~a~Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l 391 (420)
...++|+..+|+++|+|++++++..+.+..+ ..+.+.+|+.+
T Consensus 219 ia~~nE~~~la~~~GiD~~~v~~~~~~~~~i------~~~~~~pg~g~ 260 (411)
T TIGR03026 219 IAFANELARICEALGIDVYEVIEAAGTDPRI------GFNFLNPGPGV 260 (411)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCCCC------CCCcCCCCCCC
Confidence 7789999999999999999999887765322 24556666544
No 19
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.85 E-value=2.8e-20 Score=184.95 Aligned_cols=221 Identities=15% Similarity=0.189 Sum_probs=157.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCC-CCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~-l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..|||+|||+|+||+.+|..|+++| ++|+++.|++. +.+++.|..... .+..... .+.+.+++++ ...+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~-~~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSDY--EAVRENGLQVDSVHGDFHLP-PVQAYRSAED-MPPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCCH--HHHHhCCeEEEeCCCCeeec-CceEEcchhh-cCCCCEEE
Confidence 3579999999999999999999998 99999999863 566666643221 1111121 2345555543 67899999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCC-C-----eEEEECcccHHHHhhcCCeE
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-P-----FIALSGPSFALELMNKLPTA 278 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~-~-----~~vl~GP~~a~ev~~g~~t~ 278 (420)
+|||+.++.++++.+.+.+.++++|++++||++.. +.+.+.++.... . .+...+|....+...+.
T Consensus 78 lavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~--- 148 (313)
T PRK06249 78 VGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGR--- 148 (313)
T ss_pred EEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCc---
Confidence 99999999999999999998899999999999864 344455443210 0 11233454433222221
Q ss_pred EEEe---cCC-----HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHH
Q 014700 279 MVVA---SKD-----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQG 346 (420)
Q Consensus 279 i~ia---~~d-----~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~ 346 (420)
+.++ +.+ .+..+.+.++|+..++.+..++|+....|.|++.|...+..+...+...+ +.....++.+.
T Consensus 149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~ 228 (313)
T PRK06249 149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRAL 228 (313)
T ss_pred EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHH
Confidence 2333 222 46678899999999999999999999999999999755554444444333 22346789999
Q ss_pred HHHHHHHHHHcCCCh
Q 014700 347 CSEIRWLATKMGAKP 361 (420)
Q Consensus 347 ~~E~~~lA~a~Gi~~ 361 (420)
+.|+.+++++.|++.
T Consensus 229 ~~E~~~va~a~Gi~~ 243 (313)
T PRK06249 229 MAEVIQGAAACGHTL 243 (313)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999999973
No 20
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.84 E-value=1.8e-20 Score=185.75 Aligned_cols=222 Identities=19% Similarity=0.220 Sum_probs=163.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV 207 (420)
|||+|+|+|+||+.+|..|+++| ++|+++.|++. ++++++.|+......+ ..........+. +....+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~~~~~~~~~~-~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGG-NFTTPVVAATDA-EALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCC-ccccccccccCh-hhcCCCCEEEEEe
Confidence 79999999999999999999998 89999999886 8999998875544333 111111222333 4467999999999
Q ss_pred ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------CCCeEEEECcccHHHHhhcCCeEEEE
Q 014700 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQPFIALSGPSFALELMNKLPTAMVV 281 (420)
Q Consensus 208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~------~~~~~vl~GP~~a~ev~~g~~t~i~i 281 (420)
|+++++++++.+.+++++++.|++++||+... |.+.+.++.. ....++..||....+...|......+
T Consensus 76 Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~~------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~ 149 (307)
T COG1893 76 KAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGEL 149 (307)
T ss_pred ccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccC
Confidence 99999999999999999999999999999875 2344443321 11223445565554433222222222
Q ss_pred ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHc
Q 014700 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKM 357 (420)
Q Consensus 282 a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~~~E~~~lA~a~ 357 (420)
.+.+++..+.+.++|+..++.+.+..|+....|.|++.|......+..-..+.+ +.....++.+.+.|...++.+.
T Consensus 150 ~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~ 229 (307)
T COG1893 150 RGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAE 229 (307)
T ss_pred CCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhc
Confidence 344557889999999999999999999999999999999765554444444333 2345688999999999999999
Q ss_pred CCC
Q 014700 358 GAK 360 (420)
Q Consensus 358 Gi~ 360 (420)
|+.
T Consensus 230 g~~ 232 (307)
T COG1893 230 GVE 232 (307)
T ss_pred cCC
Confidence 954
No 21
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.84 E-value=1.3e-19 Score=178.50 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=159.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV 207 (420)
|||+|||+|.||.+||..|.++| ++|++|+|++. .+.+.+.| +....++.++++.+|+||+||
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G--~~v~v~~~~~~-~~~~~~~g--------------~~~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG--HQLHVTTIGPV-ADELLSLG--------------AVSVETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--CeEEEEeCCHh-HHHHHHcC--------------CeecCCHHHHHhcCCEEEEeC
Confidence 58999999999999999999998 89999999874 45555433 234457888889999999999
Q ss_pred Chh-hHHHHHHH---hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700 208 PVQ-FSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (420)
Q Consensus 208 p~~-~l~~vl~~---i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~ 283 (420)
|.. ++++++.. +.+.+.++++||.+++ +.+++.+.+.+.+.+. |. .++.+|...........+..++.+
T Consensus 64 ~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT-~~p~~~~~~~~~~~~~-G~-----~~vdaPVsGg~~~a~~g~l~~~~g 136 (292)
T PRK15059 64 PDTPQVEEVLFGENGCTKASLKGKTIVDMSS-ISPIETKRFARQVNEL-GG-----DYLDAPVSGGEIGAREGTLSIMVG 136 (292)
T ss_pred CChHHHHHHHcCCcchhccCCCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----CEEEecCCCCHHHHhcCcEEEEEc
Confidence 965 67887743 5555678999999875 7776656666666553 33 245555544333222334345567
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t 363 (420)
++++.+++++++|+..+.++++..+. | ....+|+.+|........++.|...++++.|+++++
T Consensus 137 G~~~~~~~~~p~l~~~g~~~~~~G~~-G----------------~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~ 199 (292)
T PRK15059 137 GDEAVFERVKPLFELLGKNITLVGGN-G----------------DGQTCKVANQIIVALNIEAVSEALLFASKAGADPVR 199 (292)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEeCCc-c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 78899999999999988877776664 2 233445667777777788999999999999999999
Q ss_pred hhhcc--ccch---hhhhhcccCCCCccccccc
Q 014700 364 ITGLS--GTGD---IMLTCFVNLSRNRTVGVRL 391 (420)
Q Consensus 364 ~~~l~--g~gd---l~~t~~~~~sRn~~~G~~l 391 (420)
+++.. +.+. +.........++|..+|.+
T Consensus 200 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l 232 (292)
T PRK15059 200 VRQALMGGFASSRILEVHGERMIKRTFNPGFKI 232 (292)
T ss_pred HHHHHHcCcccCHHHHhhchhhhcCCCCCCCch
Confidence 88742 2221 1112233557888888765
No 22
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.84 E-value=1.5e-19 Score=177.71 Aligned_cols=197 Identities=19% Similarity=0.210 Sum_probs=153.3
Q ss_pred EEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-h
Q 014700 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-Q 210 (420)
Q Consensus 132 IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~ 210 (420)
|||+|.||.+||..|.++| |+|++|+|+++.++.+.+.| +..+++++++++++|+||+|||+ .
T Consensus 1 ~IGlG~mG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~~~~~~advVil~vp~~~ 64 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG--HPVRVFDLFPDAVEEAVAAG--------------AQAAASPAEAAEGADRVITMLPAGQ 64 (288)
T ss_pred CCcccHhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEEeCCChH
Confidence 6899999999999999998 89999999999988888754 23456788889999999999997 6
Q ss_pred hHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHH
Q 014700 211 FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK 287 (420)
Q Consensus 211 ~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e 287 (420)
++++++ +++.+.+++++++|+++ ++.+++.+.+.+.+.+. | ..++.+|...........+..++.+++++
T Consensus 65 ~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~-g-----~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~ 137 (288)
T TIGR01692 65 HVISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAH-G-----AVFMDAPVSGGVGGARAGTLTFMVGGVAE 137 (288)
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc-C-----CcEEECCCCCCHHHHhhCcEEEEECCCHH
Confidence 688888 67888888899999988 68887766666666553 3 23566665544333233344556677888
Q ss_pred HHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhc
Q 014700 288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367 (420)
Q Consensus 288 ~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l 367 (420)
.+++++++|+..+.++++..+.-. .+.+|+.+|........++.|+..++++.|++++.+++.
T Consensus 138 ~~~~~~~~l~~~g~~~~~~g~~g~-----------------g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~ 200 (288)
T TIGR01692 138 EFAAAEPVLGPMGRNIVHCGDHGA-----------------GQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEI 200 (288)
T ss_pred HHHHHHHHHHHhcCCeEeeCCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 899999999998887777766422 233456677777777789999999999999999999875
Q ss_pred c
Q 014700 368 S 368 (420)
Q Consensus 368 ~ 368 (420)
.
T Consensus 201 ~ 201 (288)
T TIGR01692 201 A 201 (288)
T ss_pred H
Confidence 3
No 23
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.83 E-value=4e-19 Score=174.75 Aligned_cols=223 Identities=17% Similarity=0.218 Sum_probs=159.6
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccC
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp 208 (420)
||+|||+|.||..||..|+++| ++|++|+|+++..+.+.+.|. ...+++++++++||+||+|+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~--------------~~~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG--YQLHVTTIGPEVADELLAAGA--------------VTAETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCCC--------------cccCCHHHHHhcCCEEEEecC
Confidence 6999999999999999999998 999999999998888876542 223467788899999999999
Q ss_pred hh-hHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700 209 VQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (420)
Q Consensus 209 ~~-~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~ 284 (420)
.. .++.++ +.+.+.++++++||++++ +.+.+.+.+.+.+.+. | +.++.+|.+..+......+..++.++
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~g~iivd~st-~~~~~~~~l~~~l~~~-g-----~~~~~~pv~g~~~~a~~g~l~i~~gg 137 (291)
T TIGR01505 65 DSPQVEEVAFGENGIIEGAKPGKTLVDMSS-ISPIESKRFAKAVKEK-G-----IDYLDAPVSGGEIGAIEGTLSIMVGG 137 (291)
T ss_pred CHHHHHHHHcCcchHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CCEEecCCCCCHHHHhcCCEEEEecC
Confidence 64 576666 345667788999998775 4454434444444432 2 33566676654332222233445556
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 014700 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364 (420)
Q Consensus 285 d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~ 364 (420)
+++.+++++++|+..+.++++..+.-.. ..+|+.+|........+++|+..++++.|++++++
T Consensus 138 ~~~~~~~~~~ll~~lg~~~~~~g~~g~a-----------------~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~ 200 (291)
T TIGR01505 138 DQAVFDRVKPLFEALGKNIVLVGGNGDG-----------------QTCKVANQIIVALNIEAVSEALVFASKAGVDPVRV 200 (291)
T ss_pred CHHHHHHHHHHHHHhcCCeEEeCCCCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 7889999999999998877766553221 22345667777788889999999999999999999
Q ss_pred hhcc-----ccchhhhhhcccCCCCccccccc
Q 014700 365 TGLS-----GTGDIMLTCFVNLSRNRTVGVRL 391 (420)
Q Consensus 365 ~~l~-----g~gdl~~t~~~~~sRn~~~G~~l 391 (420)
.+.. +...+...+....+++|..||.+
T Consensus 201 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~ 232 (291)
T TIGR01505 201 RQALRGGLAGSTVLEVKGERVIDRTFKPGFRI 232 (291)
T ss_pred HHHHhcCcccCHHHHhhChhhhcCCCCCCcch
Confidence 8643 12223333445667888888876
No 24
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.82 E-value=9.7e-19 Score=172.89 Aligned_cols=199 Identities=11% Similarity=0.060 Sum_probs=151.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC---CcEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL 204 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~---aDiVI 204 (420)
|||+|||+|.||.+||..|.++| ++|++|+|++++++.+.+.| +....++++++++ +|+||
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g--------------~~~~~s~~~~~~~~~~advVi 64 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG--HEVVGYDVNQEAVDVAGKLG--------------ITARHSLEELVSKLEAPRTIW 64 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHCC--------------CeecCCHHHHHHhCCCCCEEE
Confidence 58999999999999999999998 89999999999888886643 2445577777655 69999
Q ss_pred EccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (420)
Q Consensus 205 laVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~ 283 (420)
+|+|.. .++++++++.+.++++++||.+++ ..+.+...+.+.+.+. | +.++.+|...........+ .++.+
T Consensus 65 ~~vp~~~~~~~v~~~i~~~l~~g~ivid~st-~~~~~~~~~~~~~~~~-g-----~~~vdapV~G~~~~a~~g~-~~~~g 136 (299)
T PRK12490 65 VMVPAGEVTESVIKDLYPLLSPGDIVVDGGN-SRYKDDLRRAEELAER-G-----IHYVDCGTSGGVWGLRNGY-CLMVG 136 (299)
T ss_pred EEecCchHHHHHHHHHhccCCCCCEEEECCC-CCchhHHHHHHHHHHc-C-----CeEEeCCCCCCHHHHhcCC-eEEec
Confidence 999987 899999999888888999999986 4444444444444432 2 3456666655432222223 34566
Q ss_pred CCHHHHHHHHHHHhcCCc---eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcC--
Q 014700 284 KDRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG-- 358 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~g~---~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~G-- 358 (420)
++++.+++++++|+..+. ++++..++ |....+|+.+|........++.|+..++++.|
T Consensus 137 G~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ 199 (299)
T PRK12490 137 GDKEIYDRLEPVFKALAPEGPGYVHAGPV-----------------GSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFD 199 (299)
T ss_pred CCHHHHHHHHHHHHHhcCcCCcEEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 788899999999999876 56666653 23344567778888888999999999999999
Q ss_pred CChhhhhhc
Q 014700 359 AKPATITGL 367 (420)
Q Consensus 359 i~~~t~~~l 367 (420)
+|++.+++.
T Consensus 200 ld~~~~~~~ 208 (299)
T PRK12490 200 FDVEDVARL 208 (299)
T ss_pred CCHHHHHHH
Confidence 999999874
No 25
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.82 E-value=1e-18 Score=172.04 Aligned_cols=225 Identities=20% Similarity=0.245 Sum_probs=157.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
+|||+|||+|.||..+|..|++.| ++|.+|+|+++..+.+.+.+ +...++++++++++|+||+|
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~~~~e~~~~~d~vi~~ 65 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG--YSLVVYDRNPEAVAEVIAAG--------------AETASTAKAVAEQCDVIITM 65 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHhcCCEEEEe
Confidence 579999999999999999999998 89999999998888777643 23455788888999999999
Q ss_pred cCh-hhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 207 Vp~-~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
+|. ..++.++ +++.+.++++++|++++. +.+.+.+.+.+.+.+. | ..++..|.+..+.........++.
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st-~~~~~~~~l~~~~~~~-g-----~~~~d~pv~g~~~~a~~g~l~i~~ 138 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPGTVVIDMSS-IAPLASREIAAALKAK-G-----IEMLDAPVSGGEPKAIDGTLSVMV 138 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCCcEEEECCC-CCHHHHHHHHHHHHHc-C-----CcEEEcCCCCCHHHHhhCcEEEEE
Confidence 995 5567776 456777888999998875 4554444444444432 2 235566655432211122233444
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700 283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362 (420)
Q Consensus 283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~ 362 (420)
+.+++.++++.++|+..+.++.+..+.-..+. +|+.+|...+....++.|+..++++.|++++
T Consensus 139 gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~-----------------~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~ 201 (296)
T PRK11559 139 GGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNV-----------------TKLANQVIVALNIAAMSEALVLATKAGVNPD 201 (296)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 56788899999999998887776655422222 3455666666777899999999999999999
Q ss_pred hhhhcc--ccc--hhhhh-hcccCCCCccccccc
Q 014700 363 TITGLS--GTG--DIMLT-CFVNLSRNRTVGVRL 391 (420)
Q Consensus 363 t~~~l~--g~g--dl~~t-~~~~~sRn~~~G~~l 391 (420)
.+++.. +.+ ..+.+ .....+|+|..||.+
T Consensus 202 ~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~ 235 (296)
T PRK11559 202 LVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRI 235 (296)
T ss_pred HHHHHHhcCcccCHHHHhhchHhhcCCCCCCcch
Confidence 887643 222 22221 223457888888764
No 26
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.81 E-value=3.3e-19 Score=176.71 Aligned_cols=219 Identities=16% Similarity=0.096 Sum_probs=154.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCCCCCCC-CCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPE-QKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~~~l~~-~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.|||+|||+|+||+.+|..|+++| ++|++++|+.++++.+++. |+......+ ...+ +... +.+ ....+|+||
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~--~~~~-~~~-~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYA--IPAE-TAD-AAEPIHRLL 75 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEEeeCCcceeec--cCCC-Ccc-cccccCEEE
Confidence 479999999999999999999998 8999999998888989864 432211111 1111 1111 222 246789999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-CCe-----EEEECcccHHHHhhcCCeE
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPF-----IALSGPSFALELMNKLPTA 278 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~-~~~-----~vl~GP~~a~ev~~g~~t~ 278 (420)
+|||++++.++++++.+++.+++.||+++||+..+ +.+.+.++... ... +...+|....+.. ...
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~---~g~ 146 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAG---HGF 146 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCH------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEec---eEE
Confidence 99999999999999999999999999999999875 33445554321 011 1112343332211 112
Q ss_pred EEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHHHc
Q 014700 279 MVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM-AALVAQGCSEIRWLATKM 357 (420)
Q Consensus 279 i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~-~al~~~~~~E~~~lA~a~ 357 (420)
+.++..+.+..+++.++|+..|+.+..++|+.+..|.|++.|...+..+...+...+.-.. ..++...+.|+.+++++.
T Consensus 147 ~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~ 226 (305)
T PRK05708 147 TWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC 226 (305)
T ss_pred EEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc
Confidence 3455444456788999999999999999999999999999997655555554444432111 146788999999999999
Q ss_pred CCC
Q 014700 358 GAK 360 (420)
Q Consensus 358 Gi~ 360 (420)
|+.
T Consensus 227 G~~ 229 (305)
T PRK05708 227 GQP 229 (305)
T ss_pred CCC
Confidence 986
No 27
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.80 E-value=2.5e-18 Score=179.55 Aligned_cols=208 Identities=11% Similarity=0.065 Sum_probs=152.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC---CcE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADY 202 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~---aDi 202 (420)
.+++|||||+|.||..||.+|+++| ++|++|+|++++++.+.+.+... +. ..+....+++|+++. +|+
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G--~~V~V~NRt~~k~~~l~~~~~~~----Ga---~~~~~a~s~~e~v~~l~~~dv 75 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE----GN---LPLYGFKDPEDFVLSIQKPRS 75 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhhhc----CC---cccccCCCHHHHHhcCCCCCE
Confidence 3578999999999999999999999 99999999999998887631100 00 012345678887765 999
Q ss_pred EEEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE
Q 014700 203 CLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (420)
Q Consensus 203 VIlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i 281 (420)
||+|||. .+++++++.+.+.+.++.+||.+++ +.+.+.....+.+.+. | +.++..|....+....... .++
T Consensus 76 Ii~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~-G-----i~fldapVSGG~~gA~~G~-~im 147 (493)
T PLN02350 76 VIILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEK-G-----LLYLGMGVSGGEEGARNGP-SLM 147 (493)
T ss_pred EEEECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CeEEeCCCcCCHHHhcCCC-eEE
Confidence 9999995 5689999999999999999999987 4444334444445443 3 3466666655433322223 346
Q ss_pred ecCCHHHHHHHHHHHhcCCce------EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 014700 282 ASKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT 355 (420)
Q Consensus 282 a~~d~e~~~~l~~ll~~~g~~------v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~ 355 (420)
.+++++.+++++++|+..+-+ +.+.++. |....+|+.+|.......+++.|+..+++
T Consensus 148 ~GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~-----------------GaG~~vKlv~N~i~~~~m~~iaEA~~l~~ 210 (493)
T PLN02350 148 PGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPG-----------------GAGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (493)
T ss_pred ecCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999987643 5555553 23344566778888888999999999999
Q ss_pred H-cCCChhhhhhc
Q 014700 356 K-MGAKPATITGL 367 (420)
Q Consensus 356 a-~Gi~~~t~~~l 367 (420)
+ .|++++.+.+.
T Consensus 211 ~~~Gld~~~l~~v 223 (493)
T PLN02350 211 SVGGLSNEELAEV 223 (493)
T ss_pred hhCCCCHHHHHHH
Confidence 8 69999988774
No 28
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.80 E-value=4.5e-18 Score=168.27 Aligned_cols=199 Identities=11% Similarity=0.098 Sum_probs=149.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC---CcEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL 204 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~---aDiVI 204 (420)
|||+|||+|.||.+||..|+++| ++|.+|+|++++++.+.+.| +...++++++++. +|+||
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~~~~~dvvi 64 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG--HEVVGYDRNPEAVEALAEEG--------------ATGADSLEELVAKLPAPRVVW 64 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCC--------------CeecCCHHHHHhhcCCCCEEE
Confidence 68999999999999999999998 99999999999888887644 2445577776654 69999
Q ss_pred EccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (420)
Q Consensus 205 laVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~ 283 (420)
+++|.. .++++++.+.+.+++++++|+++++. +.+...+.+.+.+. | +.++..|............ .++.+
T Consensus 65 ~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~-g-----~~~~dapvsG~~~~a~~g~-~~~~g 136 (301)
T PRK09599 65 LMVPAGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEK-G-----IHFVDVGTSGGVWGLERGY-CLMIG 136 (301)
T ss_pred EEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHc-C-----CEEEeCCCCcCHHHHhcCC-eEEec
Confidence 999986 78999999988898999999998744 33333444444432 3 3355666554322211123 34556
Q ss_pred CCHHHHHHHHHHHhcCCc----eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH--c
Q 014700 284 KDRKLANAVQQLLASKHL----RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK--M 357 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~g~----~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a--~ 357 (420)
++++.+++++++|+..+- ++++.+++ | ....+|+.+|........++.|...++++ .
T Consensus 137 G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~-G----------------~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~ 199 (301)
T PRK09599 137 GDKEAVERLEPIFKALAPRAEDGYLHAGPV-G----------------AGHFVKMVHNGIEYGMMQAYAEGFELLEASRF 199 (301)
T ss_pred CCHHHHHHHHHHHHHHcccccCCeEeECCC-c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788999999999998876 56666664 2 22334556777777888899999999999 9
Q ss_pred CCChhhhhhc
Q 014700 358 GAKPATITGL 367 (420)
Q Consensus 358 Gi~~~t~~~l 367 (420)
|++++++++.
T Consensus 200 gld~~~~~~~ 209 (301)
T PRK09599 200 DLDLAAVAEV 209 (301)
T ss_pred CCCHHHHHHH
Confidence 9999999874
No 29
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.80 E-value=2.4e-18 Score=179.21 Aligned_cols=252 Identities=12% Similarity=0.079 Sum_probs=170.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc---CCcEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADYC 203 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~---~aDiV 203 (420)
|++|+|||+|.||++||.+|+++| |+|++|+|++++++.+.+.+.+.. ..+..++++++++. ++|+|
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G--~~V~v~dr~~~~~~~l~~~~~~~g--------~~i~~~~s~~e~v~~l~~~d~I 70 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRG--FKISVYNRTYEKTEEFVKKAKEGN--------TRVKGYHTLEELVNSLKKPRKV 70 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhhhhcC--------CcceecCCHHHHHhcCCCCCEE
Confidence 468999999999999999999999 999999999999998887532211 02345678888775 58999
Q ss_pred EEccC-hhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 204 LHAMP-VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 204 IlaVp-~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
|++|| ...++++++++.+++.++++||.++|+...++.+.. +.+.+. | +.++..|....+........ ++.
T Consensus 71 il~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~-G-----i~fldapVSGG~~gA~~G~~-lm~ 142 (470)
T PTZ00142 71 ILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEK-G-----ILYLGMGVSGGEEGARYGPS-LMP 142 (470)
T ss_pred EEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHc-C-----CeEEcCCCCCCHHHHhcCCE-EEE
Confidence 99876 567999999999999999999999998776654443 333332 3 34555555554332222233 455
Q ss_pred cCCHHHHHHHHHHHhcCCce------EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH-
Q 014700 283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT- 355 (420)
Q Consensus 283 ~~d~e~~~~l~~ll~~~g~~------v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~- 355 (420)
+++++.+++++++|+..+-+ +.+..+. |...-+|+.+|.......+++.|+..+++
T Consensus 143 GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~-----------------GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~ 205 (470)
T PTZ00142 143 GGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPG-----------------SSGHYVKMVHNGIEYGDMQLISESYKLMKH 205 (470)
T ss_pred eCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCC-----------------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 66888999999999987655 4444442 23334456678878888899999999998
Q ss_pred HcCCChhhhhhcc-----ccch--hhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhh
Q 014700 356 KMGAKPATITGLS-----GTGD--IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLL 417 (420)
Q Consensus 356 a~Gi~~~t~~~l~-----g~gd--l~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~ 417 (420)
+.|++++.+.+.. |... ++--+...+..+-.- +-+..++.+..+.+|-=+|.=|+...
T Consensus 206 ~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~~~d~~----~~~~~l~~i~d~~~~~gtg~wt~~~a 270 (470)
T PTZ00142 206 ILGMSNEELSEVFNKWNEGILNSYLIEITAKILAKKDDL----GEEHLVDKILDIAGSKGTGKWTVQEA 270 (470)
T ss_pred hcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhhccccc----CCCcchhhhcCcccCCchHHhHHHHH
Confidence 7999998886642 1111 111111111111111 11245777777777766666665543
No 30
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.79 E-value=2.1e-18 Score=155.81 Aligned_cols=155 Identities=20% Similarity=0.230 Sum_probs=115.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
||||+|||+|.||..||.+|.++| ++|++|+|++++++++.+.+ +...++++|+++.+|+||+|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAEAG--------------AEVADSPAEAAEQADVVILC 64 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHHTT--------------EEEESSHHHHHHHBSEEEE-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHHhh--------------hhhhhhhhhHhhcccceEee
Confidence 689999999999999999999999 99999999999999998864 46778999999999999999
Q ss_pred cCh-hhHHHHHHH--hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700 207 MPV-QFSSSFLEG--ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (420)
Q Consensus 207 Vp~-~~l~~vl~~--i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~ 283 (420)
+|+ .++++++.+ +.+.+.+++++|.+++ +.+++.+.+.+.+.+. | +.++.+|..............++.+
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT-~~p~~~~~~~~~~~~~-g-----~~~vdapV~Gg~~~a~~g~l~~~~g 137 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPGKIIIDMST-ISPETSRELAERLAAK-G-----VRYVDAPVSGGPPGAEEGTLTIMVG 137 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---HHHHHHHHHHHHHT-T-----EEEEEEEEESHHHHHHHTTEEEEEE
T ss_pred cccchhhhhhhhhhHHhhccccceEEEecCC-cchhhhhhhhhhhhhc-c-----ceeeeeeeecccccccccceEEEcc
Confidence 996 679999998 9999999999999885 7776655555555443 2 3455555544332222223345566
Q ss_pred CCHHHHHHHHHHHhcCCceEE
Q 014700 284 KDRKLANAVQQLLASKHLRIS 304 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~g~~v~ 304 (420)
++++.+++++++|+..+.+++
T Consensus 138 G~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 138 GDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp S-HHHHHHHHHHHHHHEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCce
Confidence 788999999999998877766
No 31
>PLN02858 fructose-bisphosphate aldolase
Probab=99.78 E-value=1.1e-17 Score=192.99 Aligned_cols=227 Identities=14% Similarity=0.103 Sum_probs=171.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.+||||||+|.||..||.+|.++| |+|++|||++++++.+.+.| ....+++.|+.++||+||+|
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G--~~v~v~dr~~~~~~~l~~~G--------------a~~~~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSG--FKVQAFEISTPLMEKFCELG--------------GHRCDSPAEAAKDAAALVVV 67 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEEE
Confidence 468999999999999999999999 99999999999999988754 24556899999999999999
Q ss_pred cCh-hhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 207 Vp~-~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
+|. .++++++ +.+.+.+.+++++|.+++ +.+++.+.+.+.+.+. |. .+.++.+|...........+..++.
T Consensus 68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~ST-i~p~~~~~la~~l~~~-g~---~~~~lDaPVsGg~~~A~~G~L~imv 142 (1378)
T PLN02858 68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRST-ILPLQLQKLEKKLTER-KE---QIFLVDAYVSKGMSDLLNGKLMIIA 142 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCcCEEEECCC-CCHHHHHHHHHHHHhc-CC---ceEEEEccCcCCHHHHhcCCeEEEE
Confidence 995 5688887 457777888999999885 7777666666666543 31 1446666666543322334456677
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEc-CChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700 283 SKDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (420)
Q Consensus 283 ~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~ 361 (420)
+++++.+++++++|+..+..+++. ++. |....+|+.+|.+......++.|+..+|++.|+++
T Consensus 143 GG~~~~~~~~~p~l~~~g~~i~~~~G~~-----------------G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~ 205 (1378)
T PLN02858 143 SGRSDAITRAQPFLSAMCQKLYTFEGEI-----------------GAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHP 205 (1378)
T ss_pred cCCHHHHHHHHHHHHHhcCceEEecCCC-----------------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 788899999999999988877653 553 33345567788888888899999999999999999
Q ss_pred hhhhhcc--ccch---hhhhhcccCCCCccccccc
Q 014700 362 ATITGLS--GTGD---IMLTCFVNLSRNRTVGVRL 391 (420)
Q Consensus 362 ~t~~~l~--g~gd---l~~t~~~~~sRn~~~G~~l 391 (420)
+.+++.. +.|. +.........++|..||.+
T Consensus 206 ~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l 240 (1378)
T PLN02858 206 WIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFL 240 (1378)
T ss_pred HHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchh
Confidence 9998843 2232 1112224567888888764
No 32
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.77 E-value=3.1e-17 Score=169.11 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=157.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-------CCCceEEeCCHHHhccC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG 199 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-------l~~~i~a~td~~eal~~ 199 (420)
+|||+|||+|.||.+||..|+++| |+|++||+++++++.++..+ ...+.++.. -...+.++++ +++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~l~~~~~~g~l~~~~~----~~~ 75 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGE-IHIVEPDLDMVVKTAVEGGYLRATTT----PEP 75 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCC-CCcCCCCHHHHHHHHhhcCceeeecc----ccc
Confidence 689999999999999999999999 99999999999999887533 222333221 0122444443 347
Q ss_pred CcEEEEccCh----------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--------CCCCeEE
Q 014700 200 ADYCLHAMPV----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--------PRQPFIA 261 (420)
Q Consensus 200 aDiVIlaVp~----------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~--------~~~~~~v 261 (420)
||+||+|||. .++.++++.+.++++++++||..+. +.+.+.+.+...+.+.... ....+.+
T Consensus 76 aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST-v~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v 154 (415)
T PRK11064 76 ADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST-SPVGATEQMAEWLAEARPDLTFPQQAGEQADINI 154 (415)
T ss_pred CCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC-CCCCHHHHHHHHHHHhccCCcccccccCCCCeEE
Confidence 9999999997 5788888999999999999887774 7777666666666553111 0123556
Q ss_pred EECcccHHH---Hh-hcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchh
Q 014700 262 LSGPSFALE---LM-NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN 337 (420)
Q Consensus 262 l~GP~~a~e---v~-~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N 337 (420)
.+.|.+..+ .. ...+..+ +++.+++..++++++|+..+-.+....++...|. .|+.+|
T Consensus 155 ~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~-----------------~Kl~~N 216 (415)
T PRK11064 155 AYCPERVLPGQVMVELIKNDRV-IGGMTPVCSARASELYKIFLEGECVVTNSRTAEM-----------------CKLTEN 216 (415)
T ss_pred EECCCccCCCChhhhhcCCCEE-EEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHH-----------------HHHHHH
Confidence 788866543 11 1234433 5666888899999999987655555556544444 445677
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhhhhccccc
Q 014700 338 SMAALVAQGCSEIRWLATKMGAKPATITGLSGTG 371 (420)
Q Consensus 338 ~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~g 371 (420)
.+.++....++|+..+|+++|+|++.+.+.++..
T Consensus 217 ~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~ 250 (415)
T PRK11064 217 SFRDVNIAFANELSLICADQGINVWELIRLANRH 250 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccC
Confidence 8888889999999999999999999998765543
No 33
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.77 E-value=4e-17 Score=161.32 Aligned_cols=199 Identities=11% Similarity=0.076 Sum_probs=143.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH---hccCCcEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYCL 204 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e---al~~aDiVI 204 (420)
|||+|||+|.||.+||..|+++| ++|.+|+|+++.++.+.+.+.. ...++++ .+..+|+||
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g--~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~~~~~~~~~~dvIi 64 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG--HDCVGYDHDQDAVKAMKEDRTT--------------GVANLRELSQRLSAPRVVW 64 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCc--------------ccCCHHHHHhhcCCCCEEE
Confidence 68999999999999999999998 9999999999999888875421 1124433 346789999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~ 284 (420)
+|||+..++++++++.+.++++++||+++++...++.+ ..+.+.+. | +.++..|............ .++.++
T Consensus 65 ~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~-~~~~~~~~-g-----~~~vda~vsGg~~~a~~G~-~~~~gG 136 (298)
T TIGR00872 65 VMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLR-RYKLLKEK-G-----IHLLDCGTSGGVWGRERGY-CFMIGG 136 (298)
T ss_pred EEcCchHHHHHHHHHHhhCCCCCEEEECCCCCcccHHH-HHHHHHhc-C-----CeEEecCCCCCHHHHhcCC-eeeeCC
Confidence 99999999999999999999999999999876554322 22333321 2 2345555443222111122 335566
Q ss_pred CHHHHHHHHHHHhcCCc---eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHc--CC
Q 014700 285 DRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM--GA 359 (420)
Q Consensus 285 d~e~~~~l~~ll~~~g~---~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~--Gi 359 (420)
+++.+++++++|+..+- .+++..+. | ....+|+.+|........++.|...++++. |+
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~~G~~-G----------------~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~l 199 (298)
T TIGR00872 137 DGEAFARAEPLFADVAPEEQGYLYCGPC-G----------------SGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDF 199 (298)
T ss_pred CHHHHHHHHHHHHHhcCcCCCEEEECCc-c----------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88899999999998664 34555553 2 223344566777777888999999999998 56
Q ss_pred Chhhhhhc
Q 014700 360 KPATITGL 367 (420)
Q Consensus 360 ~~~t~~~l 367 (420)
+++++.+.
T Consensus 200 d~~~~~~i 207 (298)
T TIGR00872 200 DIPEVARV 207 (298)
T ss_pred CHHHHHHH
Confidence 99888874
No 34
>PLN02858 fructose-bisphosphate aldolase
Probab=99.76 E-value=3.7e-17 Score=188.59 Aligned_cols=227 Identities=12% Similarity=0.128 Sum_probs=166.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
+++|+|||+|+||.+||.+|+++| ++|++|+|+++.++.+.+.|. ...+++++++++||+||+|
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~Ga--------------~~~~s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSN--FSVCGYDVYKPTLVRFENAGG--------------LAGNSPAEVAKDVDVLVIM 387 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEEe
Confidence 479999999999999999999998 999999999998888876542 2345788889999999999
Q ss_pred cC-hhhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 207 MP-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 207 Vp-~~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
|| +.++++++ ..+.+.+.+++++|.+++ +.+++.+.+.+.+.+. + ..+.++.+|...........+..++.
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ST-vsP~~~~~la~~l~~~-g---~g~~~lDAPVsGg~~~A~~G~L~imv 462 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGASIVLSST-VSPGFVIQLERRLENE-G---RDIKLVDAPVSGGVKRAAMGTLTIMA 462 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCCEEEECCC-CCHHHHHHHHHHHHhh-C---CCcEEEEccCCCChhhhhcCCceEEE
Confidence 99 56788887 346666788999999885 6776666666666552 1 13456666665543322233444566
Q ss_pred cCCHHHHHHHHHHHhcCCceEEE-cCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700 283 SKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (420)
Q Consensus 283 ~~d~e~~~~l~~ll~~~g~~v~~-s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~ 361 (420)
+++++.+++++++|+..+-++++ .+++ |..+.+|+.+|.+......++.|+..++++.|+++
T Consensus 463 gG~~~~~~~~~plL~~lg~~i~~~~g~~-----------------G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~ 525 (1378)
T PLN02858 463 SGTDEALKSAGSVLSALSEKLYVIKGGC-----------------GAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNT 525 (1378)
T ss_pred ECCHHHHHHHHHHHHHHhCcEEEeCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 67888999999999998877765 4454 22344556677777778889999999999999999
Q ss_pred hhhhhcc--ccch---hhhhhcccCCCCccccccc
Q 014700 362 ATITGLS--GTGD---IMLTCFVNLSRNRTVGVRL 391 (420)
Q Consensus 362 ~t~~~l~--g~gd---l~~t~~~~~sRn~~~G~~l 391 (420)
+++++.. +.+. +.........++|..+|.+
T Consensus 526 ~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l 560 (1378)
T PLN02858 526 RKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSAL 560 (1378)
T ss_pred HHHHHHHHhhcccChhhhhccchhhcCCCCCCchh
Confidence 9998732 2221 1111224567888888764
No 35
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1.1e-16 Score=159.65 Aligned_cols=225 Identities=20% Similarity=0.215 Sum_probs=174.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-------CCCceEEeCCHHHhccCC
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLGA 200 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-------l~~~i~a~td~~eal~~a 200 (420)
|||+|||.|.+|...|..|++.| |+|+.+|.++++++.|++ |.-+.|.|++. ...++++++|.+++++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~-g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNK-GISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhC-CCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcC
Confidence 79999999999999999999998 999999999999999997 66778888763 133489999999999999
Q ss_pred cEEEEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE 270 (420)
Q Consensus 201 DiVIlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e 270 (420)
|++|+||++. +++++++.|.++++..++||.=+ .+.+.+.+.+.+.+.+.... ..+.+.+.|.|.+|
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS-TVPvGt~~~v~~~i~~~~~~--~~f~v~~NPEFLRE 154 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS-TVPVGTTEEVRAKIREENSG--KDFEVASNPEFLRE 154 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC-CCCCCchHHHHHHHHhhccc--CCceEecChHHhcC
Confidence 9999999852 58888999999987766665433 36667766666666655433 26778999999987
Q ss_pred Hh----hcCCeEEEEecCCHHHHHHHHHHHhcC---CceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 014700 271 LM----NKLPTAMVVASKDRKLANAVQQLLASK---HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV 343 (420)
Q Consensus 271 v~----~g~~t~i~ia~~d~e~~~~l~~ll~~~---g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~ 343 (420)
.. .-.|..++++..+....+.+++++... ..++ ...|+..+|+- |+..|+..+.-
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~-l~t~~~~AE~I-----------------KyaaNafLAtK 216 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPI-LFTDLREAELI-----------------KYAANAFLATK 216 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCE-EEecchHHHHH-----------------HHHHHHHHHHH
Confidence 32 236778889887776677888888652 4443 34566665554 45667777888
Q ss_pred HHHHHHHHHHHHHcCCChhhhhhccccchhhhh
Q 014700 344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLT 376 (420)
Q Consensus 344 ~~~~~E~~~lA~a~Gi~~~t~~~l~g~gdl~~t 376 (420)
..-++|+..+|++.|+|...+.+--|+-+.+-.
T Consensus 217 IsFiNEia~ice~~g~D~~~V~~gIGlD~RIG~ 249 (414)
T COG1004 217 ISFINEIANICEKVGADVKQVAEGIGLDPRIGN 249 (414)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCchhhH
Confidence 889999999999999999988876666665543
No 36
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.75 E-value=1.8e-16 Score=153.75 Aligned_cols=194 Identities=12% Similarity=0.124 Sum_probs=137.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCC----eEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQL----KVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~----~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
|||+|||+|+||.+|+..|.++| + +|++| +|++++.+.+.+.| +...++++++++++|+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g--~~~~~~i~v~~~r~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASG--VVPPSRISTADDSNPARRDVFQSLG--------------VKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCC--CCCcceEEEEeCCCHHHHHHHHHcC--------------CEEeCChHHHHhcCCE
Confidence 79999999999999999999988 6 89998 99998877776543 3455677788889999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
||+|+|++.++++++++.+.+.++++||++++|+..+ .+.+.++.. . .+...|+.+..+..+. +.++..
T Consensus 65 Vil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~-------~l~~~~~~~--~-vvr~mP~~~~~~~~~~-~~l~~~ 133 (266)
T PLN02688 65 IILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLA-------DLQEWAGGR--R-VVRVMPNTPCLVGEAA-SVMSLG 133 (266)
T ss_pred EEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHH-------HHHHHcCCC--C-EEEECCCcHHHHhCce-EEEEeC
Confidence 9999999999999999988888899999998888653 233444431 2 2336788776654433 333333
Q ss_pred -cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700 283 -SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (420)
Q Consensus 283 -~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~ 361 (420)
+.+++..++++++|+..|. +++.++-.. +.+....|.. ......+..++.|. +.+.|+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~--------d~~~~~~g~g-------~a~~~~~~~a~~ea---~~~~Gl~~ 194 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLL--------DAVTGLSGSG-------PAYIFLAIEALADG---GVAAGLPR 194 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHc--------chhHhhhcCH-------HHHHHHHHHHHHHH---HHHcCCCH
Confidence 3477888999999999998 555432110 0000011111 12244566677777 88899999
Q ss_pred hhhhhc
Q 014700 362 ATITGL 367 (420)
Q Consensus 362 ~t~~~l 367 (420)
+...++
T Consensus 195 ~~a~~~ 200 (266)
T PLN02688 195 DVALSL 200 (266)
T ss_pred HHHHHH
Confidence 988775
No 37
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.75 E-value=1.8e-16 Score=154.82 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=142.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.|||+|||+|+||.+|+..|.++|. .++|++|+|+++.++.+.+.. ++..+++.++++++||+||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~-------------g~~~~~~~~e~~~~aDiIi 68 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY-------------GITITTNNNEVANSADILI 68 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc-------------CcEEeCCcHHHHhhCCEEE
Confidence 3689999999999999999999872 247999999998887776521 1344557777788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe-c
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-S 283 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia-~ 283 (420)
+|||++.++++++++.++++++++||++..|+..+ .+.+.++.. .-.+...|+.+..+..+. +.+..+ .
T Consensus 69 LavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~-------~l~~~l~~~--~~vvR~MPN~~~~vg~g~-t~~~~~~~ 138 (272)
T PRK12491 69 LSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIK-------STENEFDRK--LKVIRVMPNTPVLVGEGM-SALCFNEM 138 (272)
T ss_pred EEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHH-------HHHHhcCCC--CcEEEECCChHHHHcCce-EEEEeCCC
Confidence 99999999999999999888889999999999864 355555431 125789999998876663 333332 2
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t 363 (420)
.+.+..+.+..+|+..|......++... .+....|. + .+++...+..+..-+.++|++.+.
T Consensus 139 ~~~~~~~~v~~lf~~~G~~~~~~E~~~d---------~~talsgs------g----PAf~~~~~eal~~a~v~~Gl~~~~ 199 (272)
T PRK12491 139 VTEKDIKEVLNIFNIFGQTEVVNEKLMD---------VVTSISGS------S----PAYVYMFIEAMADAAVLGGMPRKQ 199 (272)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEcHHHhh---------hHHHhccC------c----HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3567788999999999987666544321 11111111 1 234455556666677777888776
Q ss_pred hhhc
Q 014700 364 ITGL 367 (420)
Q Consensus 364 ~~~l 367 (420)
...+
T Consensus 200 A~~l 203 (272)
T PRK12491 200 AYKF 203 (272)
T ss_pred HHHH
Confidence 6553
No 38
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.74 E-value=3.5e-17 Score=160.09 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCC-CCCCCceEEeCCHHHhccCCcEEEEccChhhHHHH
Q 014700 137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLGADYCLHAMPVQFSSSF 215 (420)
Q Consensus 137 amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~-~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~v 215 (420)
+||+.+|..|+++| |+|++++|+ ++.+.+++.|+......+ .... .+.+++++++ +.++|+||+|||+.+++++
T Consensus 1 aiG~~~a~~L~~~G--~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~-~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~ 75 (293)
T TIGR00745 1 AVGSLYGAYLARAG--HDVTLLARG-EQLEALNQEGLRIVSLGGEFQFR-PVSAATSPEE-LPPADLVIITVKAYQTEEA 75 (293)
T ss_pred CchHHHHHHHHhCC--CcEEEEecH-HHHHHHHHCCcEEEecCCcEEEc-ccccccChhh-cCCCCEEEEeccchhHHHH
Confidence 58999999999998 999999997 678889887764432211 2121 3445666766 6789999999999999999
Q ss_pred HHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC------CCeEEEECcccHHHHhhcCCeEEEEecCC--HH
Q 014700 216 LEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAMVVASKD--RK 287 (420)
Q Consensus 216 l~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~------~~~~vl~GP~~a~ev~~g~~t~i~ia~~d--~e 287 (420)
++.+.+++.++++||+++||+... +.+.+.++... ...+...+|+...+...+ .+.++..+ .+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~~------~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~---~~~iG~~~~~~~ 146 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGHE------ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLG---ATKIGDYVGENE 146 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCCH------HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccc---cEEEecCCCchH
Confidence 999999999999999999999864 23444443211 011234456544332222 23444432 25
Q ss_pred HHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc---h-hHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700 288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG---N-NSMAALVAQGCSEIRWLATKMGAKPAT 363 (420)
Q Consensus 288 ~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg---~-N~~~al~~~~~~E~~~lA~a~Gi~~~t 363 (420)
..+.+.++|+..++.+..++|+....|.|++.|......+...+..++ . .....++..++.|+.++++++|+++..
T Consensus 147 ~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~ 226 (293)
T TIGR00745 147 AVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPD 226 (293)
T ss_pred HHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 678899999999999999999999999999999744433333333322 2 335689999999999999999987543
No 39
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.73 E-value=3.3e-16 Score=163.40 Aligned_cols=225 Identities=17% Similarity=0.228 Sum_probs=163.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-C-----CCceEEeCCHHHhccCC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L-----PENVIATTDAKTALLGA 200 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-l-----~~~i~a~td~~eal~~a 200 (420)
+|||+|||+|++|..+|..|+++|++++|+++|+++++++.+++.+. +.+.++.. + ..++.++++.++++++|
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~-~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL-PIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC-ccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 58999999999999999999998655889999999999999998543 22233321 1 23588999998889999
Q ss_pred cEEEEccC--hh-------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECc
Q 014700 201 DYCLHAMP--VQ-------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP 265 (420)
Q Consensus 201 DiVIlaVp--~~-------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP 265 (420)
|++|+||| .. +++++++.|.++++++++||.-+ .+.+.+.+.+...+.+...+ ..+.+.+.|
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S-Tvp~Gtt~~~~~~l~~~~~g--~~f~v~~~P 156 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKG--INFQILSNP 156 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC-CCCCChHHHHHHHHHhhCCC--CCeEEEECC
Confidence 99999996 21 58889999999999888877554 36666655555555543211 356788899
Q ss_pred ccHHHHh--h--cCCeEEEEecCC----HHHHHHHHHHHhcCC-ceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccch
Q 014700 266 SFALELM--N--KLPTAMVVASKD----RKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN 336 (420)
Q Consensus 266 ~~a~ev~--~--g~~t~i~ia~~d----~e~~~~l~~ll~~~g-~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~ 336 (420)
.+..+.. . ..+..+++++.+ ++..+++.++++..- -..+...++..+|+.|. ..
T Consensus 157 Erl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~-----------------~e 219 (473)
T PLN02353 157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKL-----------------AA 219 (473)
T ss_pred CccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHH-----------------HH
Confidence 8876521 1 234456667654 335677888887542 12344567777776654 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCChhhhhhccccch
Q 014700 337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGD 372 (420)
Q Consensus 337 N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gd 372 (420)
|...++....++|+..+|+++|+|...+.+.++.-.
T Consensus 220 N~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~ 255 (473)
T PLN02353 220 NAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDS 255 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCC
Confidence 677788888999999999999999988887665443
No 40
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.73 E-value=3.3e-16 Score=160.05 Aligned_cols=212 Identities=20% Similarity=0.192 Sum_probs=146.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-----CCCceEEeCCHHHhccCCcE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY 202 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-----l~~~i~a~td~~eal~~aDi 202 (420)
|||+|||+|.||..+|..|+. | |+|++||+++++++.+++ |..+.+.++.. ....+..++++++++.++|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G--~~VigvD~d~~kv~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N--HEVVALDILPSRVAMLND-RISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C--CcEEEEECCHHHHHHHHc-CCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCE
Confidence 699999999999999988875 7 999999999999999987 33333333321 11235556667788899999
Q ss_pred EEEccChh-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHH
Q 014700 203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL 271 (420)
Q Consensus 203 VIlaVp~~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev 271 (420)
||+|||.. +++++++++.. ++++++||..+. +.+.+.+.+.+.+.+ ..+.++|.++.+.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST-v~pgtt~~l~~~~~~--------~~v~~~PE~l~~G 146 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST-VPVGFTAAMHKKYRT--------ENIIFSPEFLREG 146 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee-cCCchHHHHHHHhhc--------CcEEECcccccCC
Confidence 99999954 57888888877 578888887764 777665444433322 1245688877642
Q ss_pred h----hcCCeEEEEecCCHHHHHHHHHHHhc--CCceEE-EcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 014700 272 M----NKLPTAMVVASKDRKLANAVQQLLAS--KHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVA 344 (420)
Q Consensus 272 ~----~g~~t~i~ia~~d~e~~~~l~~ll~~--~g~~v~-~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~ 344 (420)
. ...|..+++++. ++.++++.++|.. .+-.+. +..++..+|+ .|+.+|...++..
T Consensus 147 ~a~~d~~~p~rvv~G~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~-----------------~Kl~~N~~~a~~I 208 (388)
T PRK15057 147 KALYDNLHPSRIVIGER-SERAERFAALLQEGAIKQNIPTLFTDSTEAEA-----------------IKLFANTYLAMRV 208 (388)
T ss_pred cccccccCCCEEEEEcC-cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHH-----------------HHHHHHHHHHHHH
Confidence 1 013334555554 4556777777754 221222 3455544444 4466778888889
Q ss_pred HHHHHHHHHHHHcCCChhhhhhccccc
Q 014700 345 QGCSEIRWLATKMGAKPATITGLSGTG 371 (420)
Q Consensus 345 ~~~~E~~~lA~a~Gi~~~t~~~l~g~g 371 (420)
..++|+..+|+++|+|.+.+.+..+.-
T Consensus 209 a~~NE~a~lae~~GiD~~eV~~a~~~d 235 (388)
T PRK15057 209 AYFNELDSYAESLGLNTRQIIEGVCLD 235 (388)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHhcCC
Confidence 999999999999999999988765533
No 41
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.72 E-value=2e-16 Score=164.92 Aligned_cols=203 Identities=10% Similarity=0.080 Sum_probs=146.9
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc---cCCcEEEE
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYCLH 205 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal---~~aDiVIl 205 (420)
+|+|||+|.||.+||.+|+++| ++|++|+|++++++.+.+.+.... .+...+++++++ +.+|+||+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G--~~V~v~drt~~~~~~l~~~~~~g~---------~~~~~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG--FTVSVYNRTPEKTDEFLAEHAKGK---------KIVGAYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHhhccCCC---------CceecCCHHHHHhhcCCCCEEEE
Confidence 4899999999999999999999 999999999999988886521100 123344666644 57899999
Q ss_pred ccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700 206 AMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (420)
Q Consensus 206 aVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~ 284 (420)
+||+ ..++++++++.+++.++++||+++|+...++.+. .+.+.+. .+.++.+|....+........ ++.++
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~------gi~fvdapVsGG~~gA~~G~~-im~GG 141 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAK------GILFVGSGVSGGEEGARKGPS-IMPGG 141 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhc------CCEEEcCCCCCCHHHHhcCCc-CCCCC
Confidence 9997 7799999999999999999999998665544333 2233322 234666666554332222233 34667
Q ss_pred CHHHHHHHHHHHhcCCceE------EEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH-Hc
Q 014700 285 DRKLANAVQQLLASKHLRI------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KM 357 (420)
Q Consensus 285 d~e~~~~l~~ll~~~g~~v------~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~-a~ 357 (420)
+++.+++++++|+..+-++ .+.++. |....+|+.+|.....+.+++.|+..|++ +.
T Consensus 142 ~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~-----------------GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~ 204 (467)
T TIGR00873 142 SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD-----------------GAGHYVKMVHNGIEYGDMQLICEAYDILKDGL 204 (467)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCceEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999876542 333332 33344567788888888999999999985 79
Q ss_pred CCChhhhhhc
Q 014700 358 GAKPATITGL 367 (420)
Q Consensus 358 Gi~~~t~~~l 367 (420)
|++++.+.+.
T Consensus 205 g~~~~~l~~v 214 (467)
T TIGR00873 205 GLSNEEIAEV 214 (467)
T ss_pred CCCHHHHHHH
Confidence 9998887664
No 42
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.72 E-value=3.1e-15 Score=143.15 Aligned_cols=231 Identities=14% Similarity=0.190 Sum_probs=159.4
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCC-CCe-EEEEeC-CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKS-QLK-VYMLMR-DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~-~~~-V~l~~r-~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD 201 (420)
+..|||+|||+|.||.+++..|.++|. ..+ +++++| ++++.+.+.+.. ++..+++.+++++++|
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~D 68 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------------NVSTTTDWKQHVTSVD 68 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------------CcEEeCChHHHHhcCC
Confidence 446799999999999999999988762 123 777887 466666666531 2345567888889999
Q ss_pred EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE
Q 014700 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (420)
Q Consensus 202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i 281 (420)
+||+|+|++.++++++++.++++ +++||++++|+..+ .+.+.++.. ...++.+|+++.++..+.+.....
T Consensus 69 iViiavp~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~-------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~ 138 (245)
T PRK07634 69 TIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGPS-------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMG 138 (245)
T ss_pred EEEEecCHHHHHHHHHHHHhhcc-CCEEEEECCCCCHH-------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeC
Confidence 99999999999999999988775 67999999999864 355555432 235679999999998887655444
Q ss_pred ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361 (420)
Q Consensus 282 a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~ 361 (420)
...+++..+.++++|+..|...+..++.. +.++...|. + .+++...+..+.+.+.+.|+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~~~e~~~---------~~~~a~~gs------~----pa~~~~~~~a~~~~~~~~Gl~~ 199 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQLCTEEEV---------HQLTAVTGS------A----PAFLYYFAESLIEATKSYGVDE 199 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEECHHHc---------chHHhhhcc------h----HHHHHHHHHHHHHHHHHcCCCH
Confidence 45678889999999999998876543321 111111111 1 1233444455566688889998
Q ss_pred hhhhhcc-----ccchhhhhhcccCCCCccccccccCCCChHHHHHHc----CCcccccchh
Q 014700 362 ATITGLS-----GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSM----NQVLVNPSMQ 414 (420)
Q Consensus 362 ~t~~~l~-----g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~----~~~~eG~~t~ 414 (420)
+.-..+. |.+++ +.++.++++..++. |.+++|++..
T Consensus 200 ~~a~~~~~~~~~g~~~~-----------------~~~~~~~~~l~~~v~spgG~T~~gl~~l 244 (245)
T PRK07634 200 ETAKHLVIQMISGSASM-----------------LEQTQDPANLREQVTTPGGSTAEGLKAL 244 (245)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HhCCCCHHHHHHhCCCCChHHHHHHHHh
Confidence 8766542 32222 22346677777776 4567777643
No 43
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.70 E-value=1.1e-15 Score=157.83 Aligned_cols=220 Identities=10% Similarity=0.100 Sum_probs=152.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-C--CCceEEeCCHHHhccCCcEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L--PENVIATTDAKTALLGADYC 203 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-l--~~~i~a~td~~eal~~aDiV 203 (420)
.|||+|||+|.||..||..|++ | |+|++||+++++++.++ .|..+.+.++.. + ..++.++++.+ ++++||++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~--~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~-~~~~advv 80 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S--RQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIE-KIKECNFY 80 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C--CEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHH-HHcCCCEE
Confidence 4899999999999999999887 6 89999999999999999 454433332211 0 12456677765 58899999
Q ss_pred EEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhh-HHHHHHHHhCCC-CCCeEEEECcccHHHH
Q 014700 204 LHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRM-MSQIIPQALRNP-RQPFIALSGPSFALEL 271 (420)
Q Consensus 204 IlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~-~se~l~~~lg~~-~~~~~vl~GP~~a~ev 271 (420)
|+|||.. ++....+.|.++++++++||..++ +.+.+.+. ....+.+..|.. ...+.+.+.|.+..+.
T Consensus 81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST-v~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G 159 (425)
T PRK15182 81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST-VYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPG 159 (425)
T ss_pred EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC-CCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCC
Confidence 9999954 455556788899999999887774 77766543 334444422321 1234455666665432
Q ss_pred h---h-cCCeEEEEecCCHHHHHHHHHHHhcCC-ceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 014700 272 M---N-KLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346 (420)
Q Consensus 272 ~---~-g~~t~i~ia~~d~e~~~~l~~ll~~~g-~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~ 346 (420)
. . ..+..+ +++.+++..+.+.++++... ...+...++...|. .|+.+|.+.++....
T Consensus 160 ~a~~~~~~~~ri-v~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~-----------------~Kl~~N~~~av~Ia~ 221 (425)
T PRK15182 160 DKKHRLTNIKKI-TSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEA-----------------AKVIENTQRDLNIAL 221 (425)
T ss_pred cccccccCCCeE-EECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHH-----------------HHHHHHHHHHHHHHH
Confidence 1 1 233334 44566777888888888643 22344555544444 446678888899999
Q ss_pred HHHHHHHHHHcCCChhhhhhcccc
Q 014700 347 CSEIRWLATKMGAKPATITGLSGT 370 (420)
Q Consensus 347 ~~E~~~lA~a~Gi~~~t~~~l~g~ 370 (420)
++|+..+|+++|+|.+.+++.++.
T Consensus 222 ~NE~a~lae~~GiD~~~v~~a~~~ 245 (425)
T PRK15182 222 VNELAIIFNRLNIDTEAVLRAAGS 245 (425)
T ss_pred HHHHHHHHHHhCcCHHHHHHHhcC
Confidence 999999999999999999887543
No 44
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.67 E-value=7.8e-15 Score=143.61 Aligned_cols=159 Identities=11% Similarity=0.153 Sum_probs=120.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV 203 (420)
|+||+|||+|+||.+++..|.++|. .++|.+|+|++ ++.+.+.... ..+..+.+.+++++++|+|
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~------------~~~~~~~~~~e~~~~aDvV 68 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKY------------PTVELADNEAEIFTKCDHS 68 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHc------------CCeEEeCCHHHHHhhCCEE
Confidence 5799999999999999999998761 26899999864 3344444321 0234456777778899999
Q ss_pred EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe-
Q 014700 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA- 282 (420)
Q Consensus 204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia- 282 (420)
|+|+|++.+.++++++.++++++++||++++|+..+ .+.+.++. . -.+...|+.+..+..|. +.+...
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~-------~l~~~~~~--~-~vvR~MPN~~~~~g~g~-t~~~~~~ 137 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLD-------DLLEITPG--L-QVSRLIPSLTSAVGVGT-SLVAHAE 137 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC--C-CEEEEeCccHHHHhhhc-EEEecCC
Confidence 999999999999999999888888999999999864 34455543 1 25788999998877664 333332
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEcCC
Q 014700 283 SKDRKLANAVQQLLASKHLRISTSSD 308 (420)
Q Consensus 283 ~~d~e~~~~l~~ll~~~g~~v~~s~D 308 (420)
..+++..+.++.+|+..|..+.+.++
T Consensus 138 ~~~~~~~~~v~~l~~~~G~~~~v~E~ 163 (277)
T PRK06928 138 TVNEANKSRLEETLSHFSHVMTIREE 163 (277)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEchh
Confidence 23567788999999999988776543
No 45
>PRK07680 late competence protein ComER; Validated
Probab=99.67 E-value=2.6e-14 Score=139.41 Aligned_cols=158 Identities=12% Similarity=0.179 Sum_probs=117.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
|||+|||+|+||.+++..|.++|. .++|.+|+|+++..+.+.+.. .++..+.+.++++.++|+||+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~------------~g~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY------------PGIHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc------------CCeEEECCHHHHHHhCCEEEE
Confidence 589999999999999999999872 137999999998877765531 024556677787889999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-C
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K 284 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-~ 284 (420)
|||++.+.++++++.+++.++++||++++|+..+ .+.+.++. . .+...|+.+.....|. +.+..+. .
T Consensus 69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~-------~L~~~~~~--~--~~r~~p~~~~~~~~G~-t~~~~g~~~ 136 (273)
T PRK07680 69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVE-------QLETLVPC--Q--VARIIPSITNRALSGA-SLFTFGSRC 136 (273)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC--C--EEEECCChHHHHhhcc-EEEeeCCCC
Confidence 9999999999999999888889999999988632 34444442 1 3445566654433443 2223332 3
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCCh
Q 014700 285 DRKLANAVQQLLASKHLRISTSSDV 309 (420)
Q Consensus 285 d~e~~~~l~~ll~~~g~~v~~s~Di 309 (420)
+.+..+.+.++|+..|..+++.+++
T Consensus 137 ~~~~~~~~~~ll~~~G~~~~i~e~~ 161 (273)
T PRK07680 137 SEEDQQKLERLFSNISTPLVIEEDI 161 (273)
T ss_pred CHHHHHHHHHHHHcCCCEEEEChHh
Confidence 5667789999999999887777664
No 46
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.67 E-value=1.2e-14 Score=140.37 Aligned_cols=205 Identities=17% Similarity=0.211 Sum_probs=148.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
+|||+|||+|+||.+|+..|.++|. ..+|++.+|++++.+.+.+.- ++..+++.++++.++|+||
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-------------g~~~~~~~~~~~~~advv~ 67 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-------------GVVTTTDNQEAVEEADVVF 67 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-------------CCcccCcHHHHHhhCCEEE
Confidence 5799999999999999999999882 358999999999887565531 1122557778889999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE-ec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV-AS 283 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i-a~ 283 (420)
+|||++.+++++.++.+ ..++++|||+..|+..+ .+.+.++. . -.+...|+.+..+..|.. .+.. ..
T Consensus 68 LavKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~-------~l~~~l~~--~-~vvR~MPNt~a~vg~g~t-~i~~~~~ 135 (266)
T COG0345 68 LAVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSIE-------TLERLLGG--L-RVVRVMPNTPALVGAGVT-AISANAN 135 (266)
T ss_pred EEeChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHH-------HHHHHcCC--C-ceEEeCCChHHHHcCcce-eeecCcc
Confidence 99999999999999998 77899999999999864 35566652 2 257789999988777642 2333 23
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t 363 (420)
.+.+..+.+.++|+..|.-+++.++.... +....|. + .+++...+..+..-+.+.|+++++
T Consensus 136 ~~~~~~~~v~~l~~~~G~v~~v~E~~~da---------~TaisGS------g----PAyv~~~iEal~~agv~~Gl~~~~ 196 (266)
T COG0345 136 VSEEDKAFVEALLSAVGKVVEVEESLMDA---------VTALSGS------G----PAYVFLFIEALADAGVRLGLPREE 196 (266)
T ss_pred CCHHHHHHHHHHHHhcCCeEEechHHhhH---------HHHHhcC------C----HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 46778889999999999887776554321 1111111 1 234455566667778888999888
Q ss_pred hhhcc-----ccchhhh
Q 014700 364 ITGLS-----GTGDIML 375 (420)
Q Consensus 364 ~~~l~-----g~gdl~~ 375 (420)
...++ |.+.+..
T Consensus 197 A~~l~~~t~~Gaakll~ 213 (266)
T COG0345 197 ARELAAQTVAGAAKLLL 213 (266)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77643 5555543
No 47
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.66 E-value=3.9e-14 Score=138.65 Aligned_cols=199 Identities=19% Similarity=0.231 Sum_probs=134.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcC--CCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKK--SQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG--~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
..|||+|||+|+||.+|+..|.++| ..++|++|+|+. ++.+.+.+.. ++..++++.++++++|+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------------g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-------------GVKGTHNKKELLTDANI 68 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-------------CceEeCCHHHHHhcCCE
Confidence 3579999999999999999999886 236899999975 4556665431 23455677888889999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
||+|||++.+.++++++.+.++++++||++++|+.+++ +.+.++.. .-.+...|+.+..+..+. + ++.+
T Consensus 69 Vilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~-------l~~~~~~~--~~v~r~mPn~~~~~~~~~-t-~~~~ 137 (279)
T PRK07679 69 LFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHS-------IRNLLQKD--VPIIRAMPNTSAAILKSA-T-AISP 137 (279)
T ss_pred EEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHH-------HHHHcCCC--CeEEEECCCHHHHHhccc-E-EEee
Confidence 99999999999999999888888899999999998653 33333321 124556687765544332 3 2223
Q ss_pred c--CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700 283 S--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK 360 (420)
Q Consensus 283 ~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~ 360 (420)
+ .+++..+.++++|+..|..++..++.. +.+....|. +. .....+..++.|. +.+.|++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~---------~~~~a~~Gs------gp-a~~~~~~eal~e~---~~~~Gl~ 198 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSVVEEEDM---------HAVTALSGS------GP-AYIYYVVEAMEKA---AKKIGLK 198 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEeCHHHh---------hhHHHhhcC------HH-HHHHHHHHHHHHH---HHHcCCC
Confidence 3 246788999999999998766544321 110001111 11 1233334444444 8888999
Q ss_pred hhhhhhc
Q 014700 361 PATITGL 367 (420)
Q Consensus 361 ~~t~~~l 367 (420)
++....+
T Consensus 199 ~~~a~~~ 205 (279)
T PRK07679 199 EDVAKSL 205 (279)
T ss_pred HHHHHHH
Confidence 8887764
No 48
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.7e-14 Score=143.65 Aligned_cols=218 Identities=17% Similarity=0.172 Sum_probs=159.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-------CCCceEEeCCHHHhccC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG 199 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-------l~~~i~a~td~~eal~~ 199 (420)
.++|+|||+|.+|.++|..++++| ++|+.+|.++.+++.+++.. .....++.. -...+++++|+++ ++.
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G--~~ViG~DIn~~~Vd~ln~G~-~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~ 84 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAG--FKVIGVDINQKKVDKLNRGE-SYIEEPDLDEVVKEAVESGKLRATTDPEE-LKE 84 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcC--CceEeEeCCHHHHHHHhCCc-ceeecCcHHHHHHHHHhcCCceEecChhh-ccc
Confidence 379999999999999999999999 99999999999999999743 221122221 1346899999987 579
Q ss_pred CcEEEEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECccc
Q 014700 200 ADYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSF 267 (420)
Q Consensus 200 aDiVIlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~ 267 (420)
||++|+|||.. +++...+.|+++|++|.+||.=+. +.+.+.+.+...+.+..++.. .++.+-+.|..
T Consensus 85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST-~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST-TPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC-CCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 99999999962 578888999999999999886654 666666666666655422211 34555555543
Q ss_pred HH-----HHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Q 014700 268 AL-----ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL 342 (420)
Q Consensus 268 a~-----ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al 342 (420)
.. .-....+ -++++.+++..+..+.+.+..--.+...++...+|++|++- |.....
T Consensus 164 v~PG~~~~el~~~~--kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~E-----------------N~fRdV 224 (436)
T COG0677 164 VLPGNVLKELVNNP--KVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTE-----------------NTFRDV 224 (436)
T ss_pred cCCCchhhhhhcCC--ceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHh-----------------hhhhHH
Confidence 32 1111222 35678888888888888887655567778888888887654 555677
Q ss_pred HHHHHHHHHHHHHHcCCChhhhhhcc
Q 014700 343 VAQGCSEIRWLATKMGAKPATITGLS 368 (420)
Q Consensus 343 ~~~~~~E~~~lA~a~Gi~~~t~~~l~ 368 (420)
..+..+|+..+|.++|++...+++++
T Consensus 225 NIALaNElali~~~~GIdvwevIeaA 250 (436)
T COG0677 225 NIALANELALICNAMGIDVWEVIEAA 250 (436)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHh
Confidence 78888999999999999976666643
No 49
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=9e-14 Score=134.89 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=114.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
||||+|||+|+||.+++..|.++|. .++|.+|+|+++..+.+.+.. ++...++.++++.++|+||+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-------------g~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-------------GVRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-------------CCeecCChHHHHhcCCEEEE
Confidence 6899999999999999999998762 157999999998888777641 12344567777889999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-C
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K 284 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-~ 284 (420)
|+|.+.++++++++.+++ +++||++++|+..+ .+.+.++.. .-.+..-|+++..+..+ .+.+.... .
T Consensus 69 ~v~~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~-------~l~~~~~~~--~~iv~~~P~~p~~~~~~-~~~i~~~~~~ 136 (267)
T PRK11880 69 AVKPQVMEEVLSELKGQL--DKLVVSIAAGVTLA-------RLERLLGAD--LPVVRAMPNTPALVGAG-MTALTANALV 136 (267)
T ss_pred EcCHHHHHHHHHHHHhhc--CCEEEEecCCCCHH-------HHHHhcCCC--CcEEEecCCchHHHcCc-eEEEecCCCC
Confidence 999999999999998876 57899999998643 344444421 12344567776554433 22233322 3
Q ss_pred CHHHHHHHHHHHhcCCceEEEc
Q 014700 285 DRKLANAVQQLLASKHLRISTS 306 (420)
Q Consensus 285 d~e~~~~l~~ll~~~g~~v~~s 306 (420)
+++..+.++.+|+..|..++..
T Consensus 137 ~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 137 SAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred CHHHHHHHHHHHHhCCeEEEEC
Confidence 7888899999999999766554
No 50
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.62 E-value=1.6e-14 Score=145.10 Aligned_cols=200 Identities=14% Similarity=0.114 Sum_probs=130.3
Q ss_pred CeEEEEcccH--------------------HHHHHHHHHHhcCCCCeEEEEeCCHHH-----HHHHHHhcCCCCCCCCCC
Q 014700 128 NKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPAV-----CQSINEKHCNCRYFPEQK 182 (420)
Q Consensus 128 mkI~IIGaGa--------------------mG~alA~~La~aG~~~~V~l~~r~~~~-----~~~i~~~g~~~~~l~~~~ 182 (420)
|||.|.|+|+ -|++||..|+++| |+|++|+|+++. .+.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG--~~V~v~Dr~~~~l~~~~~~~l~~~----------- 67 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAG--HDVVLAEPNRSILSEELWKKVEDA----------- 67 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCC--CeEEEEECCHHHhhHHHHHHHHHC-----------
Confidence 6888888886 4889999999998 999999999873 3334332
Q ss_pred CCCceEEeCCHHHhccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------
Q 014700 183 LPENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------ 255 (420)
Q Consensus 183 l~~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~------ 255 (420)
++.+++++.++++++|+||+|+|... ++++++++.+.++++++|++++++ .+. ..++.+.+.++..
T Consensus 68 ---Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~-~~~---~~s~~l~~~l~~~~~~~gi 140 (342)
T PRK12557 68 ---GVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTV-SPV---VLYYSLEGELRTKRKDVGI 140 (342)
T ss_pred ---CCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCC-CHH---HHHHHHHHHhcccccccCe
Confidence 34566788888899999999999887 999999999999999999988864 332 2223343333210
Q ss_pred --CCCeEEEECcccHHHHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcc
Q 014700 256 --RQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN 333 (420)
Q Consensus 256 --~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~ 333 (420)
.++..+..+|.+...+..+.++.. ....+++.+++++++|+..|.+++..+. + ....+|
T Consensus 141 ~~~~p~~v~Gae~g~l~Vm~gg~t~~-~~~~~~e~~e~v~~LL~a~G~~v~~~~~--g--~~~~vk-------------- 201 (342)
T PRK12557 141 SSMHPAAVPGTPQHGHYVIAGKTTNG-TELATEEQIEKCVELAESIGKEPYVVPA--D--VVSAVA-------------- 201 (342)
T ss_pred eecCCccccccccchheEEeCCCccc-ccCCCHHHHHHHHHHHHHcCCEEEEeCH--H--HHHHHH--------------
Confidence 112223334444333333332211 1233678889999999999998876552 2 222222
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700 334 LGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (420)
Q Consensus 334 lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~ 366 (420)
+.+|...++...++.|...++++.|.++..+.+
T Consensus 202 ~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~ 234 (342)
T PRK12557 202 DMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 234445555556666666666666666555543
No 51
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.60 E-value=1e-13 Score=134.55 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=131.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.|||+|||+|+||++++..|.+++. ..++++++|+++.. + +....++.++++++|+||
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~--------------~~~~~~~~~~~~~~D~Vi 62 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P--------------FVYLQSNEELAKTCDIIV 62 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C--------------eEEeCChHHHHHhCCEEE
Confidence 4799999999999999999998762 23588888876421 1 123456777778999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe-c
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-S 283 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia-~ 283 (420)
+|+|++.++++++++.+++++ ..||++.+|+..+ .+.+.++.. ...+...|+++..+..+. +.+... .
T Consensus 63 lavkp~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~-------~l~~~~~~~--~~vvr~mPn~p~~~g~g~-t~i~~~~~ 131 (260)
T PTZ00431 63 LAVKPDLAGKVLLEIKPYLGS-KLLISICGGLNLK-------TLEEMVGVE--AKIVRVMPNTPSLVGQGS-LVFCANNN 131 (260)
T ss_pred EEeCHHHHHHHHHHHHhhccC-CEEEEEeCCccHH-------HHHHHcCCC--CeEEEECCCchhHhccee-EEEEeCCC
Confidence 999999999999999988864 6789999999854 344544431 224678999997765542 333322 2
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t 363 (420)
.+.+..+.++++|+..|..+...++... ++....|. -.+++...+..+..-+.+.|++.++
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v~E~~~d---------~~ta~~gs----------gPA~~~~~~~al~~~~v~~Gl~~~~ 192 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEIKEKDMD---------IATAISGC----------GPAYVFLFIESLIDAGVKNGLNRDV 192 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEEChHHcc---------hhhhhcCC----------HHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3567789999999999998877654221 11111111 1234455556666777788888877
Q ss_pred hhhc
Q 014700 364 ITGL 367 (420)
Q Consensus 364 ~~~l 367 (420)
...+
T Consensus 193 a~~l 196 (260)
T PTZ00431 193 SKNL 196 (260)
T ss_pred HHHH
Confidence 6653
No 52
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.59 E-value=1e-13 Score=146.24 Aligned_cols=201 Identities=17% Similarity=0.240 Sum_probs=136.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh----cCCCCCCCCCCC--CCceEEeCCHHHhccCC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK----HCNCRYFPEQKL--PENVIATTDAKTALLGA 200 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~----g~~~~~l~~~~l--~~~i~a~td~~eal~~a 200 (420)
+|||+|||+|.||.+||..|+++| ++|++||++++..+.+.+. .....+++...+ ..++..++++++++++|
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G--~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~a 81 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAG--IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGA 81 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCC
Confidence 579999999999999999999998 9999999999877665321 000111222111 12367788998889999
Q ss_pred cEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeE
Q 014700 201 DYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA 278 (420)
Q Consensus 201 DiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~ 278 (420)
|+||.|+|... .+.+++++.+.++++++|.+.+.|+..+ .+.+.+..+ ...++.-|..+... .+..
T Consensus 82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s-------~l~~~~~~~--~r~~~~hP~nP~~~---~~Lv 149 (495)
T PRK07531 82 DWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPS-------DLQEGMTHP--ERLFVAHPYNPVYL---LPLV 149 (495)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCc--ceEEEEecCCCccc---CceE
Confidence 99999999764 5557788888888888888888887643 223333321 22344555433221 1222
Q ss_pred EEEecC--CHHHHHHHHHHHhcCCceEEEcC-ChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHH
Q 014700 279 MVVASK--DRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQ-GCSEIRWLA 354 (420)
Q Consensus 279 i~ia~~--d~e~~~~l~~ll~~~g~~v~~s~-Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~-~~~E~~~lA 354 (420)
.++++. +++.++++.++|+..|...++.. ++ +|....-+.. .++|+..++
T Consensus 150 evv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~--------------------------~gfi~nrl~~a~~~EA~~L~ 203 (495)
T PRK07531 150 ELVGGGKTSPETIRRAKEILREIGMKPVHIAKEI--------------------------DAFVGDRLLEALWREALWLV 203 (495)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCC--------------------------cchhHHHHHHHHHHHHHHHH
Confidence 233332 47899999999999998877653 32 2233323333 469999999
Q ss_pred HHcCCChhhhhhc
Q 014700 355 TKMGAKPATITGL 367 (420)
Q Consensus 355 ~a~Gi~~~t~~~l 367 (420)
++.|++++.+...
T Consensus 204 ~~g~~s~~~id~~ 216 (495)
T PRK07531 204 KDGIATTEEIDDV 216 (495)
T ss_pred HcCCCCHHHHHHH
Confidence 9999998887653
No 53
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.59 E-value=8.4e-14 Score=131.67 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=121.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|||+||| +|+||+++|..|+++| |+|++|+|++++.+.+.+.... .+........+... +..++++++|+||+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~~~~~~l~~~~~~--~~~~~g~~~~~~~~-~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDLEKAEEAAAKALE--ELGHGGSDIKVTGA-DNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCHHHHHHHHHHHHh--hccccCCCceEEEe-ChHHHHhcCCEEEEE
Confidence 6999997 8999999999999998 9999999999888777654311 11111111122333 456778899999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch----------hhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhc--
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT----------LRMMSQIIPQALRNPRQPFIALSGPSFALELMNK-- 274 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t----------~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g-- 274 (420)
||.+.+.++++++.+.+. +++||+++||+..+. ....++.+++.++.. .-.+..-|+...++..+
T Consensus 76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~ 152 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVD 152 (219)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCC
Confidence 999999999999887775 489999999997520 123356777776531 11222334444333221
Q ss_pred --CCeEEEEecCCHHHHHHHHHHHhcC-CceEEEcCChh
Q 014700 275 --LPTAMVVASKDRKLANAVQQLLASK-HLRISTSSDVT 310 (420)
Q Consensus 275 --~~t~i~ia~~d~e~~~~l~~ll~~~-g~~v~~s~Di~ 310 (420)
....+.++++|++..+++.++.+.. ||..+....+.
T Consensus 153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~ 191 (219)
T TIGR01915 153 DEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLE 191 (219)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchh
Confidence 2233567788888888999999998 99987666543
No 54
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.58 E-value=2.9e-14 Score=139.64 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=116.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV 207 (420)
|||+|||+|.||.++|..|.++| ++|++|+++++..+.+.+.|... ...++. ++++++|+||+|+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERGLVD------------EASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCcc------------cccCCH-hHhcCCCEEEEcC
Confidence 68999999999999999999998 89999999998888777654210 122344 4578999999999
Q ss_pred ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcc-----cHH-HHhhcCCeEEEE
Q 014700 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPS-----FAL-ELMNKLPTAMVV 281 (420)
Q Consensus 208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~-----~a~-ev~~g~~t~i~i 281 (420)
|...+.++++++.++++++++|.++. ++.... .+.+.+.... ......+.|+. .+. .++.+.+..++.
T Consensus 66 p~~~~~~~~~~l~~~l~~~~ii~d~~-Svk~~~----~~~~~~~~~~-~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p 139 (279)
T PRK07417 66 PIGLLLPPSEQLIPALPPEAIVTDVG-SVKAPI----VEAWEKLHPR-FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP 139 (279)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEeCc-chHHHH----HHHHHHhhCC-ceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence 99999999999999888887776544 344321 1222222111 11111223332 121 234555444333
Q ss_pred e-cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHH
Q 014700 282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVL 322 (420)
Q Consensus 282 a-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~ 322 (420)
. ..+++.++.++++++..|.+++..+.-..++..++..|..
T Consensus 140 ~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp 181 (279)
T PRK07417 140 TENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLP 181 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchH
Confidence 2 3467888999999999999887776666666666655543
No 55
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.57 E-value=2.5e-13 Score=134.74 Aligned_cols=200 Identities=20% Similarity=0.224 Sum_probs=130.5
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-----cCCCCCCCC-C--CCCCceEEeCCHHHh
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYFPE-Q--KLPENVIATTDAKTA 196 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-----g~~~~~l~~-~--~l~~~i~a~td~~ea 196 (420)
..++||+|||+|.||.+||..|+++| ++|++|+++++.++.+++. +.. .+. . ....++..+++++++
T Consensus 2 ~~~~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 2 NPIQNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVY---APLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHh---hhcccHHHHhhceEEeCCHHHH
Confidence 34679999999999999999999998 8999999999887777652 110 000 0 011235667788888
Q ss_pred ccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhc
Q 014700 197 LLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274 (420)
Q Consensus 197 l~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g 274 (420)
+++||+||+|||.+. ...++.++.++++++++|++.+.|+... .+.+.++.. ..+ +..-|..+... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~-------~l~~~~~~~-~~~-ig~h~~~p~~~--~ 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT-------AIAQAVTRP-ERF-VGTHFFTPADV--I 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH-------HHHhhcCCc-ccE-EEEccCCCCcc--C
Confidence 899999999999763 7788888888888888888888887632 233333321 111 11112221111 1
Q ss_pred CCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcC-ChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Q 014700 275 LPTAMVVAS--KDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (420)
Q Consensus 275 ~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~-Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~ 351 (420)
... .++.+ .+++.++.+.++|+..|..++... |..|. +. +|. ....++|+.
T Consensus 146 ~l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~----------------nr~----~~~~~~Ea~ 199 (311)
T PRK06130 146 PLV-EVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IA----------------NRI----QHALAREAI 199 (311)
T ss_pred ceE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HH----------------HHH----HHHHHHHHH
Confidence 112 22333 368889999999999998766654 65442 11 111 224577777
Q ss_pred HHHHHcCCChhhhhh
Q 014700 352 WLATKMGAKPATITG 366 (420)
Q Consensus 352 ~lA~a~Gi~~~t~~~ 366 (420)
.+++..|++++.+..
T Consensus 200 ~l~~~g~~~~~~id~ 214 (311)
T PRK06130 200 SLLEKGVASAEDIDE 214 (311)
T ss_pred HHHHcCCCCHHHHHH
Confidence 777777777666554
No 56
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.56 E-value=8.6e-14 Score=144.79 Aligned_cols=238 Identities=12% Similarity=0.062 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCHHHhccC---CcEEEEccCh-hhH
Q 014700 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLG---ADYCLHAMPV-QFS 212 (420)
Q Consensus 138 mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~~eal~~---aDiVIlaVp~-~~l 212 (420)
||..||.+|+++| ++|.+|+|++++.+.+.+. +.. .++....++++++.. +|+||++||. ..+
T Consensus 1 MG~~mA~nL~~~G--~~V~v~nrt~~~~~~l~~~~g~~----------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v 68 (459)
T PRK09287 1 MGKNLALNIASHG--YTVAVYNRTPEKTDEFLAEEGKG----------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPV 68 (459)
T ss_pred CcHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhCCC----------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHH
Confidence 8999999999999 9999999999999988773 210 135667788887764 8999999996 579
Q ss_pred HHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHHHHHHH
Q 014700 213 SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292 (420)
Q Consensus 213 ~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~~~~l 292 (420)
+++++++.+.+.++.+||.++|....++ ....+.+.+. | +.++..|....+........+ +.+++++.++++
T Consensus 69 ~~Vi~~l~~~l~~GdiiID~gn~~~~~t-~~~~~~l~~~-G-----i~fvdapVSGG~~gA~~G~si-M~GG~~~a~~~~ 140 (459)
T PRK09287 69 DAVIEQLLPLLEKGDIIIDGGNSNYKDT-IRREKELAEK-G-----IHFIGMGVSGGEEGALHGPSI-MPGGQKEAYELV 140 (459)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCCEE-EEeCCHHHHHHH
Confidence 9999999999999999999988544443 3333444332 2 346666655543322222334 456688999999
Q ss_pred HHHHhcCCceE-------EEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH-HcCCChhhh
Q 014700 293 QQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KMGAKPATI 364 (420)
Q Consensus 293 ~~ll~~~g~~v-------~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~-a~Gi~~~t~ 364 (420)
+++|+..+-++ .+.++. |...-+|+.+|.......+++.|+..+++ ++|++++.+
T Consensus 141 ~piL~~ia~~~~~g~~c~~~vG~~-----------------GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l 203 (459)
T PRK09287 141 APILEKIAAKVEDGEPCVTYIGPD-----------------GAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEI 203 (459)
T ss_pred HHHHHHHhhhhcCCCCceeeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999866553 333332 33344567778888888999999999999 589999888
Q ss_pred hhcc-----ccch---hhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhh
Q 014700 365 TGLS-----GTGD---IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLL 417 (420)
Q Consensus 365 ~~l~-----g~gd---l~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~ 417 (420)
.+.. |.+. +..+......+|+..|. ..++.++.+.+|-=+|.=|+...
T Consensus 204 ~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~-----~~~d~i~d~~~~~gtg~Wt~~~a 259 (459)
T PRK09287 204 ADVFAEWNKGELNSYLIEITADILRQKDEETGK-----PLVDVILDKAGQKGTGKWTSQSA 259 (459)
T ss_pred HHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC-----cchHHhcCcccCCcHHHHHHHHH
Confidence 6533 2111 11122122233433222 34667777777766666555443
No 57
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.56 E-value=2.3e-13 Score=132.89 Aligned_cols=207 Identities=16% Similarity=0.180 Sum_probs=129.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV 207 (420)
|||+|||+|.||.+||..|.++|..++|++|+|+++.++.+.+.|.. ....+++++. ++|+||+||
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~-~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV-------------DEIVSFEELK-KCDVIFLAI 66 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC-------------cccCCHHHHh-cCCEEEEeC
Confidence 58999999999999999999988434799999999888777654421 1123566654 599999999
Q ss_pred ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC---CCeE--EEECcccHH-HHhhcCCeEEEE
Q 014700 208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR---QPFI--ALSGPSFAL-ELMNKLPTAMVV 281 (420)
Q Consensus 208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~---~~~~--vl~GP~~a~-ev~~g~~t~i~i 281 (420)
|...+.++++++.+ ++++++|+++. ... ..+.+.+.+..+... ++.. ...||..+. ....+....++.
T Consensus 67 p~~~~~~~~~~l~~-l~~~~iv~d~g--s~k---~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~ 140 (275)
T PRK08507 67 PVDAIIEILPKLLD-IKENTTIIDLG--STK---AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCD 140 (275)
T ss_pred cHHHHHHHHHHHhc-cCCCCEEEECc--cch---HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEec
Confidence 99999999999988 88899888753 221 123333433221110 1110 112343332 233444332222
Q ss_pred e-cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHH-HHHHHHHhc--ccchhHHHHHHHHHHHHHHHHH
Q 014700 282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLA-IAAGIVVGM--NLGNNSMAALVAQGCSEIRWLA 354 (420)
Q Consensus 282 a-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~A-i~~G~~~gl--~lg~N~~~al~~~~~~E~~~lA 354 (420)
. ..+++.++.+.++|+..|.+++..+.-..++..+++.|+-. ++..+...+ .........+...+++.+.+++
T Consensus 141 ~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~~~~~~~~~~~~~~~gfrd~tria 217 (275)
T PRK08507 141 VEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISFALANTVLKEEDERNIFDLAGGGFRSMSRLA 217 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHhhcccchhhhhhcc
Confidence 2 24667889999999999999888877666666666555321 122222222 1111223355566777766664
No 58
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.56 E-value=9.1e-14 Score=128.25 Aligned_cols=163 Identities=23% Similarity=0.268 Sum_probs=107.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC------C-CCceEEeCCHHHhccCC
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA 200 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~------l-~~~i~a~td~~eal~~a 200 (420)
|||+|||+|.+|..+|..|+++| |+|+.+|.++++++.+++ |..+.+.++.. + ..++.+++|.++++.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~-g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNN-GELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHT-TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhh-ccccccccchhhhhccccccccchhhhhhhhhhhcc
Confidence 79999999999999999999999 999999999999999987 43333444431 1 46789999999989999
Q ss_pred cEEEEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhh-hHHHHHHHHhCCCCCCeEEEECcccHH
Q 014700 201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLR-MMSQIIPQALRNPRQPFIALSGPSFAL 269 (420)
Q Consensus 201 DiVIlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~-~~se~l~~~lg~~~~~~~vl~GP~~a~ 269 (420)
|++|+|||.. +++++++.|.++++++++||.-+ .+.+.+.+ .+..++.+.-+. ...+.+.+.|.+..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S-TvppGtt~~~~~~ile~~~~~-~~~f~la~~PErl~ 155 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES-TVPPGTTEELLKPILEKRSGK-KEDFHLAYSPERLR 155 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS-SSSTTHHHHHHHHHHHHHCCT-TTCEEEEE------
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc-EEEEeeehHhhhhhhhhhccc-ccCCeEEECCCccC
Confidence 9999999852 48889999999999988887665 47777655 444555554332 24677788888776
Q ss_pred HH----hhcCCeEEEEecCCHHHHHHHHHH
Q 014700 270 EL----MNKLPTAMVVASKDRKLANAVQQL 295 (420)
Q Consensus 270 ev----~~g~~t~i~ia~~d~e~~~~l~~l 295 (420)
+. ....+..++.+..+....++++++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 41 113455677777776665566654
No 59
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.55 E-value=3.8e-13 Score=133.53 Aligned_cols=201 Identities=16% Similarity=0.164 Sum_probs=133.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc-------CCCCCCCC---CCCCCceEEeCCHHHh
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPE---QKLPENVIATTDAKTA 196 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g-------~~~~~l~~---~~l~~~i~a~td~~ea 196 (420)
+|||+|||+|.||++||..|+++| ++|++|+++++.++.+.+.- ....++++ ..+..++..+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence 479999999999999999999998 99999999988766543210 00011111 1223456788899988
Q ss_pred ccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhc
Q 014700 197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274 (420)
Q Consensus 197 l~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g 274 (420)
+++||+||.|+|.. ....+++++.+..+++.++.+.+++... ..+.+.+... ...+...|-.+...
T Consensus 80 ~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~-------~~la~~~~~~--~~~~~~hp~~p~~~--- 147 (308)
T PRK06129 80 VADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA-------SAFTEHLAGR--ERCLVAHPINPPYL--- 147 (308)
T ss_pred hCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCH-------HHHHHhcCCc--ccEEEEecCCCccc---
Confidence 89999999999975 4667777887777777777665554432 2233433321 12233334332111
Q ss_pred CCeEEEEe---cCCHHHHHHHHHHHhcCCceEEEcC-ChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 014700 275 LPTAMVVA---SKDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350 (420)
Q Consensus 275 ~~t~i~ia---~~d~e~~~~l~~ll~~~g~~v~~s~-Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~ 350 (420)
.+ .+.+. +.+++.++++.++++..|..+++.. +..|. + .++ +....++|+
T Consensus 148 ~~-lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~-----i----------------~nr----l~~a~~~EA 201 (308)
T PRK06129 148 IP-VVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF-----V----------------LNR----LQGALLREA 201 (308)
T ss_pred Cc-eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH-----H----------------HHH----HHHHHHHHH
Confidence 11 12233 3678899999999999998877664 44331 1 111 234688999
Q ss_pred HHHHHHcCCChhhhhhc
Q 014700 351 RWLATKMGAKPATITGL 367 (420)
Q Consensus 351 ~~lA~a~Gi~~~t~~~l 367 (420)
..++++.|++++.+...
T Consensus 202 ~~l~~~g~~~~~~id~~ 218 (308)
T PRK06129 202 FRLVADGVASVDDIDAV 218 (308)
T ss_pred HHHHHcCCCCHHHHHHH
Confidence 99999999999888764
No 60
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.54 E-value=9.7e-13 Score=127.31 Aligned_cols=224 Identities=13% Similarity=0.106 Sum_probs=145.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|||+|||+|+||.+|+..|.++|.. .++.+|+|++++.+.+.+... ++..+++.+++++++|+||+|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~------------~~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP------------KVRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC------------CceEeCCHHHHHHhCCEEEEE
Confidence 5899999999999999999988721 246789999988877766421 134556788878899999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCH
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR 286 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~ 286 (420)
+|++.+.++++++. +.++++||++..|+..+ .+.+.++.. ...+...|+.......+ .+. +...
T Consensus 69 v~p~~~~~vl~~l~--~~~~~~vis~~ag~~~~-------~l~~~~~~~--~~~~r~~P~~~~a~~~g-~t~--~~~~-- 132 (258)
T PRK06476 69 VRPQIAEEVLRALR--FRPGQTVISVIAATDRA-------ALLEWIGHD--VKLVRAIPLPFVAERKG-VTA--IYPP-- 132 (258)
T ss_pred eCHHHHHHHHHHhc--cCCCCEEEEECCCCCHH-------HHHHHhCCC--CCEEEECCCChhhhCCC-CeE--ecCC--
Confidence 99999999998873 45788999988777643 344444321 23466778766543322 222 2222
Q ss_pred HHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700 287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366 (420)
Q Consensus 287 e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~ 366 (420)
.+.++++|+..|-.++..+. +. .+.+....+ ..+.+...+.|+..++++.|++++....
T Consensus 133 --~~~~~~l~~~lG~~~~~~~e-------~~-~d~~~a~~s-----------~~a~~~~~~~~~~~~~~~~Gl~~~~a~~ 191 (258)
T PRK06476 133 --DPFVAALFDALGTAVECDSE-------EE-YDLLAAASA-----------LMATYFGILETATGWLEEQGLKRQKARA 191 (258)
T ss_pred --HHHHHHHHHhcCCcEEECCh-------Hh-ccceeehhc-----------cHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 25789999998877654322 01 111111011 1223335788999999999999988776
Q ss_pred cc-----ccchhhhhhcccCCCCccccccccCCCChHHHHHHc----CCcccccchhh
Q 014700 367 LS-----GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSM----NQVLVNPSMQP 415 (420)
Q Consensus 367 l~-----g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~----~~~~eG~~t~~ 415 (420)
+. |...+.. ...+.++++..+++ |.+++|++..+
T Consensus 192 ~~~~~~~G~~~l~~---------------~~~~~~~~~l~~~v~spgGtT~~gl~~le 234 (258)
T PRK06476 192 YLAPLFASLAQDAV---------------RSTKTDFSALSREFSTKGGLNEQVLNDFS 234 (258)
T ss_pred HHHHHHHHHHHHHH---------------hcCCCCHHHHHHhCCCCCchHHHHHHHHH
Confidence 42 3333310 13445666666665 45677766654
No 61
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.52 E-value=1e-12 Score=136.41 Aligned_cols=214 Identities=14% Similarity=0.206 Sum_probs=135.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|||+||| +|.||.++|..|.++| ++|++|+|+++.++.+.... ++...+++++++.++|+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G--~~V~v~~r~~~~~~~~a~~~-------------gv~~~~~~~e~~~~aDvVIla 65 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG--FEVIVTGRDPKKGKEVAKEL-------------GVEYANDNIDAAKDADIVIIS 65 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC--CEEEEEECChHHHHHHHHHc-------------CCeeccCHHHHhccCCEEEEe
Confidence 6999998 7999999999999998 89999999987765554431 123455777888999999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHHhhcCCeEEEEe-c
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTAMVVA-S 283 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev~~g~~t~i~ia-~ 283 (420)
+|...+.++++++.++++++++|++++. +-. ...+.+.+.++... .....+.||..+ ...+....++.. +
T Consensus 66 vp~~~~~~vl~~l~~~l~~~~iViDvsS-vK~----~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p~~~ 138 (437)
T PRK08655 66 VPINVTEDVIKEVAPHVKEGSLLMDVTS-VKE----RPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTPTEK 138 (437)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEEccc-ccH----HHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEecCCC
Confidence 9999999999999999999999988874 221 22344444443210 001122345432 233433322222 2
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChhHHHHH---HHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHH-HHHcC
Q 014700 284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIA---GALKNVLAIAAGI-VVGMNLGNNSMAALVAQGCSEIRWL-ATKMG 358 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~---~alkNv~Ai~~G~-~~gl~lg~N~~~al~~~~~~E~~~l-A~a~G 358 (420)
.+.+.+++++++|+..|.+++..+.-..+... ..+.++++.+.+. ...+.+.......+...+++.+..+ .+-.+
T Consensus 139 ~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa~ 218 (437)
T PRK08655 139 RSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPIYELMIDIIGRILG 218 (437)
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHhc
Confidence 35788899999999999998877655554433 3344444444332 1222222223335566677776554 33335
Q ss_pred CChhh
Q 014700 359 AKPAT 363 (420)
Q Consensus 359 i~~~t 363 (420)
.+|+.
T Consensus 219 ~~p~l 223 (437)
T PRK08655 219 QNPYL 223 (437)
T ss_pred CCHHH
Confidence 55543
No 62
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.49 E-value=1.1e-12 Score=130.18 Aligned_cols=179 Identities=16% Similarity=0.196 Sum_probs=117.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.+||+|||+|.||.++|..|.++|..++|++|+|+++..+.+.+.|.. ....++++++++++|+||+|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~------------~~~~~~~~~~~~~aDvViia 73 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG------------DRVTTSAAEAVKGADLVILC 73 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC------------ceecCCHHHHhcCCCEEEEC
Confidence 479999999999999999999987334899999999887777664421 12334667778899999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE----------CcccHH-HHhhcC
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS----------GPSFAL-ELMNKL 275 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~----------GP~~a~-ev~~g~ 275 (420)
+|.....++++++.++++++++|+++. ++... ..+.+.+.++. ...++. ||..+. ++..+.
T Consensus 74 vp~~~~~~v~~~l~~~l~~~~iv~dvg-s~k~~----~~~~~~~~~~~---~~~~v~~hPm~g~e~~G~~~a~~~l~~g~ 145 (307)
T PRK07502 74 VPVGASGAVAAEIAPHLKPGAIVTDVG-SVKAS----VIAAMAPHLPE---GVHFIPGHPLAGTEHSGPDAGFAELFENR 145 (307)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEeCc-cchHH----HHHHHHHhCCC---CCeEEeCCCCCCCcccchhhcCHHHHCCC
Confidence 999999999999988888888776653 33322 11223232221 111222 332221 344454
Q ss_pred CeEEEE-ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHH---HHHHHHHHHHH
Q 014700 276 PTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGVEI---AGALKNVLAIA 325 (420)
Q Consensus 276 ~t~i~i-a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~---~~alkNv~Ai~ 325 (420)
...++. .+.+.+.++.+.++|+..|.+++..+.-..++. .+.+.++++.+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~ 199 (307)
T PRK07502 146 WCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYT 199 (307)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHH
Confidence 433332 245678889999999999998877553333333 33444554443
No 63
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.48 E-value=1.9e-13 Score=111.97 Aligned_cols=93 Identities=26% Similarity=0.347 Sum_probs=76.9
Q ss_pred eEEEEcccHHHHHHHHHHHhcC-CCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC-CHHHhccCCcEEEE
Q 014700 129 KVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG-~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t-d~~eal~~aDiVIl 205 (420)
||+|||+|+||.+++..|.++| ..++|.++ +|++++.+++.+.. ++.+.. +..++++.+|+||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-------------GVQATADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-------------TTEEESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-------------ccccccCChHHhhccCCEEEE
Confidence 7999999999999999999986 23689955 99999998887753 123444 67888999999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG 235 (420)
|||++.+.++++++ +...+++++|++++|
T Consensus 68 av~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVKPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S-GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred EECHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999999 666789999999876
No 64
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.46 E-value=1e-12 Score=133.29 Aligned_cols=182 Identities=18% Similarity=0.259 Sum_probs=115.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV 207 (420)
+||+|||+|.||.+||..|.++| ++|.+|+++++..+.....+... .. ...+++++++++||+||+||
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~~~~~--------~~--~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARALGFGV--------ID--ELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHhcCCC--------Cc--ccccCHHHHhcCCCEEEEeC
Confidence 47999999999999999999998 89999998876544443332211 00 23356778889999999999
Q ss_pred ChhhHHHHHHHhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-----CCeE--EEECcccHH-HHhhcCCeE
Q 014700 208 PVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-----QPFI--ALSGPSFAL-ELMNKLPTA 278 (420)
Q Consensus 208 p~~~l~~vl~~i~~-~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~-----~~~~--vl~GP~~a~-ev~~g~~t~ 278 (420)
|...+.++++++.+ .++++++|.++. ++... +.+.+.+.++... +++. ..+||..+. +++.+.++.
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~-SvK~~----i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~i 143 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVG-SVKGA----ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWV 143 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCc-cccHH----HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEE
Confidence 99999999999987 477787665543 34322 1223333322110 1111 122333332 455666555
Q ss_pred EEEec-CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHH---HHHHHHHHHH
Q 014700 279 MVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIAG---ALKNVLAIAA 326 (420)
Q Consensus 279 i~ia~-~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~---alkNv~Ai~~ 326 (420)
++... .+.+.++.++++|+..|..++..+.-..+...+ .+.++++.+.
T Consensus 144 l~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 144 LTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 44433 467888999999999998887654433444333 3445544433
No 65
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.46 E-value=1.7e-12 Score=127.61 Aligned_cols=168 Identities=13% Similarity=0.179 Sum_probs=113.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------cCCCCCCCCC---CCCCceEEeCCHHHh
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA 196 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------g~~~~~l~~~---~l~~~i~a~td~~ea 196 (420)
++||+|||+|.||..+|..|+++| ++|++||++++.++.+.+. +.....+... ....++..+++++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 368999999999999999999998 9999999999988776542 1000000000 012356778889888
Q ss_pred ccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHHh
Q 014700 197 LLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELM 272 (420)
Q Consensus 197 l~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev~ 272 (420)
+++||+||.|+|... .+.++.++.+++++++++++.+.++.+.. +.+.+..+. ....++ .|.+.
T Consensus 79 ~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~-------l~~~~~~~~r~~g~h~~-~Pv~~---- 146 (288)
T PRK09260 79 VADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE-------IASFTKRPERVIAMHFF-NPVHK---- 146 (288)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH-------HHhhcCCcccEEEEecC-CCccc----
Confidence 999999999999754 45677888888888887755554566532 223322210 111233 44422
Q ss_pred hcCCeEEEEecC---CHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 273 NKLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 273 ~g~~t~i~ia~~---d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
.+ .+.+.+. +++.++++.++++..|..+++..|..|
T Consensus 147 --~~-Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G 185 (288)
T PRK09260 147 --MK-LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG 185 (288)
T ss_pred --Cc-eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc
Confidence 12 2334333 789999999999999998888777544
No 66
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.46 E-value=1.3e-12 Score=121.12 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=116.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
||+|+|+|+|+||.++|.+|+++| |+|++-.|+. +..+...+. +.+ .++.. +++++.+.+|+||+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag--~eV~igs~r~~~~~~a~a~~-l~~----------~i~~~-~~~dA~~~aDVVvL 66 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG--HEVIIGSSRGPKALAAAAAA-LGP----------LITGG-SNEDAAALADVVVL 66 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC--CeEEEecCCChhHHHHHHHh-hcc----------ccccC-ChHHHHhcCCEEEE
Confidence 689999999999999999999999 9999986554 444433332 111 12222 56678899999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc----c------hhhhHHHHHHHHhCCCCCCeEEEECccc--HHHHhh
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL----N------TLRMMSQIIPQALRNPRQPFIALSGPSF--ALELMN 273 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~----~------t~~~~se~l~~~lg~~~~~~~vl~GP~~--a~ev~~ 273 (420)
+||..++.++++++...+. +++||+.+|.+.. . .....++++++.++... ++.+-++ +..+..
T Consensus 67 AVP~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ak----VVkAFn~i~a~~l~~ 141 (211)
T COG2085 67 AVPFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAK----VVKAFNTIPAAVLAD 141 (211)
T ss_pred eccHHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcc----hhhhhcccCHHHhcc
Confidence 9999999999999998876 8999999997531 1 12346788888877631 2222111 111111
Q ss_pred ----cCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCCh
Q 014700 274 ----KLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDV 309 (420)
Q Consensus 274 ----g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di 309 (420)
+....+.++++|.+..+.+.++.+..||+......+
T Consensus 142 ~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L 181 (211)
T COG2085 142 LAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPL 181 (211)
T ss_pred CCCcCCceeEEEecCcHHHHHHHHHHHHhcCcceeecccc
Confidence 123456678889999999999999999987754443
No 67
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.44 E-value=6.1e-12 Score=123.68 Aligned_cols=169 Identities=21% Similarity=0.281 Sum_probs=112.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc--CCCCCCCCCCC---------CCceEEeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH--CNCRYFPEQKL---------PENVIATTDAKT 195 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g--~~~~~l~~~~l---------~~~i~a~td~~e 195 (420)
++||+|||+|.||..+|..|+++| ++|++|+++++.++++++.- ....+.+...+ ..++..++|+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 579999999999999999999998 99999999998776665421 01111111111 246778889998
Q ss_pred hccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL 271 (420)
Q Consensus 196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev 271 (420)
++++||+||.|+|.+ ..+++++++.+.++++++|++.+.++.+. + +.+.+..+ ..+..+ ..|.+
T Consensus 81 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~------~-~~~~~~~~-~r~vg~Hf~~p~~---- 148 (287)
T PRK08293 81 AVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS------Q-FAEATGRP-EKFLALHFANEIW---- 148 (287)
T ss_pred HhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH------H-HHhhcCCc-ccEEEEcCCCCCC----
Confidence 899999999999965 57888999999888888876655555432 2 22333221 111111 12211
Q ss_pred hhcCCeEEEE--ecCCHHHHHHHHHHHhcCCceEEEc-CChhH
Q 014700 272 MNKLPTAMVV--ASKDRKLANAVQQLLASKHLRISTS-SDVTG 311 (420)
Q Consensus 272 ~~g~~t~i~i--a~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g 311 (420)
..+...++ ...+++.++++.++++..|...... .|.-|
T Consensus 149 --~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pg 189 (287)
T PRK08293 149 --KNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPG 189 (287)
T ss_pred --cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 11222222 2457889999999999999876554 46543
No 68
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.42 E-value=4.9e-13 Score=118.45 Aligned_cols=115 Identities=18% Similarity=0.305 Sum_probs=86.9
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh
Q 014700 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (420)
Q Consensus 130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~ 209 (420)
|+|+|+|+||+.+|..|+++| ++|+++.|++ +.+.+++.+.......+...........+..+....+|+||+|||+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCC--CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 799999999999999999988 9999999999 8888888876433211111111112223332335789999999999
Q ss_pred hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700 210 QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (420)
Q Consensus 210 ~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg 253 (420)
.+++++++.+.+++.+++.|++++||+... +.+.+.++
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~------~~l~~~~~ 115 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNE------EVLAEYFP 115 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSSSSHH------HHHHCHST
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCCCCcH------HHHHHHcC
Confidence 999999999999999999999999999864 44555554
No 69
>PLN02256 arogenate dehydrogenase
Probab=99.42 E-value=1.3e-11 Score=122.30 Aligned_cols=211 Identities=16% Similarity=0.145 Sum_probs=133.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVI 204 (420)
..|||+|||+|.||.++|..|.+.| ++|++|++++.. +...+.| +...++.++++ .++|+||
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G--~~V~~~d~~~~~-~~a~~~g--------------v~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG--HTVLATSRSDYS-DIAAELG--------------VSFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECccHH-HHHHHcC--------------CeeeCCHHHHhhCCCCEEE
Confidence 4689999999999999999999988 899999998632 2222222 22345777765 4799999
Q ss_pred EccChhhHHHHHHHh-hhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHH----hhcCCeEE
Q 014700 205 HAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL----MNKLPTAM 279 (420)
Q Consensus 205 laVp~~~l~~vl~~i-~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev----~~g~~t~i 279 (420)
+|||...+.++++++ .++++++++|+++..+=. ...+.+.+.++.. .. .+..-|.++.+. ..+.+..+
T Consensus 98 lavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~-----~~~~~~~~~l~~~-~~-~V~~HPmaG~e~~~~~~~~~~~~~ 170 (304)
T PLN02256 98 LCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKE-----FPKNLLLQVLPEE-FD-ILCTHPMFGPESGKGGWAGLPFVY 170 (304)
T ss_pred EecCHHHHHHHHHhhhhhccCCCCEEEecCCchH-----HHHHHHHHhCCCC-Ce-EEecCCCCCCCCCccccCCCeEEE
Confidence 999999999999998 677888999988865211 1233445544321 11 122224333332 22322111
Q ss_pred E----E-ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH---HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Q 014700 280 V----V-ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351 (420)
Q Consensus 280 ~----i-a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a---lkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~ 351 (420)
. + ...+++..+.+.++++..|.+++..+--..++..++ +.++++.+.... . .. ...+...+++.+.
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~--~-~~---~~~~~~~gfrd~t 244 (304)
T PLN02256 171 DKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKM--E-LE---STPINTKGYETLL 244 (304)
T ss_pred ecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHc--C-Cc---ccccccccHHHHH
Confidence 1 0 123567889999999999999887765555554433 444444333221 1 11 1355677899999
Q ss_pred HHHHH-cCCChhhhhh
Q 014700 352 WLATK-MGAKPATITG 366 (420)
Q Consensus 352 ~lA~a-~Gi~~~t~~~ 366 (420)
+++.. +..+|+...+
T Consensus 245 ria~r~~~~~p~lw~d 260 (304)
T PLN02256 245 RLVENTSSDSFDLYYG 260 (304)
T ss_pred HHHHhhcCCCHHHHHH
Confidence 99864 4566654333
No 70
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.41 E-value=9.2e-12 Score=122.62 Aligned_cols=170 Identities=15% Similarity=0.210 Sum_probs=112.0
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCC-CCCCCCCC--------CCceEEeCCHH
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNC-RYFPEQKL--------PENVIATTDAK 194 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~-~~l~~~~l--------~~~i~a~td~~ 194 (420)
+..+||+|||+|.||..||..|+++| ++|++|+++++.++.+.+. ..+. .+.+...+ ..++..+++++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 79 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE 79 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH
Confidence 34679999999999999999999998 9999999999877664321 0000 00111111 13467777875
Q ss_pred HhccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCC--CeEEEECcccHHH
Q 014700 195 TALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ--PFIALSGPSFALE 270 (420)
Q Consensus 195 eal~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~--~~~vl~GP~~a~e 270 (420)
+ +++||+||+|+|.. ..+.+++++.+.++++++|++.+.++... .+.+.+..+.. .+.++. |.....
T Consensus 80 ~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s-------~la~~~~~~~r~~g~h~~~-p~~~~~ 150 (292)
T PRK07530 80 D-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT-------RLASATDRPERFIGIHFMN-PVPVMK 150 (292)
T ss_pred H-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCcccEEEeeccC-CcccCc
Confidence 4 78999999999964 46777889999999999988777676542 23333322100 111111 222111
Q ss_pred HhhcCCeEEEE-ecCCHHHHHHHHHHHhcCCceEEEcCChh
Q 014700 271 LMNKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVT 310 (420)
Q Consensus 271 v~~g~~t~i~i-a~~d~e~~~~l~~ll~~~g~~v~~s~Di~ 310 (420)
. ..++. .+.+++.++++.++|+..|..+++..|.-
T Consensus 151 ---~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p 186 (292)
T PRK07530 151 ---L--VELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP 186 (292)
T ss_pred ---e--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Confidence 1 11222 24678999999999999998888777764
No 71
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.41 E-value=8.5e-12 Score=127.22 Aligned_cols=192 Identities=16% Similarity=0.217 Sum_probs=127.7
Q ss_pred ccchhhhchhcceeccccccccc-cchhhcCCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCC
Q 014700 97 RRKIVKVAWEKLVRWSRTWRSKA-KTDILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN 174 (420)
Q Consensus 97 ~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~ 174 (420)
+....+.-|...+.++++.+.+. ...+++.+++|+||| +|.||..+|..|.++| ++|++|+|++.
T Consensus 67 ~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G--~~V~~~d~~~~----------- 133 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSG--YQVRILEQDDW----------- 133 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCC--CeEEEeCCCcc-----------
Confidence 44445556777777776555543 445666789999999 9999999999999998 99999998531
Q ss_pred CCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700 175 CRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN 254 (420)
Q Consensus 175 ~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~ 254 (420)
+++++++.+||+||+|+|.....++++++.+ ++++++|++++. +-.. +.+.+.+.++.
T Consensus 134 ----------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~S-vK~~----~~~~~~~~~~~ 191 (374)
T PRK11199 134 ----------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLTS-VKNA----PLQAMLAAHSG 191 (374)
T ss_pred ----------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECCC-ccHH----HHHHHHHhCCC
Confidence 1455667899999999999999999999988 889999988753 2211 12233333322
Q ss_pred CCCCeEEEECcccHHHHhhcCCeEEEEec-CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH---HHHHHHHHHH
Q 014700 255 PRQPFIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAG 327 (420)
Q Consensus 255 ~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a---lkNv~Ai~~G 327 (420)
.......+.||.... ..+ ..+++.. .+++.++.+.++++..|.+++..+.-.+++..++ +.|+++++.+
T Consensus 192 ~fvg~HPm~G~~~~~--~~~--~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~ 264 (374)
T PRK11199 192 PVLGLHPMFGPDVGS--LAK--QVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYG 264 (374)
T ss_pred CEEeeCCCCCCCCcc--cCC--CEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122345554321 122 2233443 3567789999999999999888776555554443 4455544433
No 72
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.41 E-value=8.9e-12 Score=122.13 Aligned_cols=171 Identities=16% Similarity=0.190 Sum_probs=113.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAKT 195 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~-----------i~~~g~~~~~l~~~~l~~~i~a~td~~e 195 (420)
++||+|||+|.||..+|..|+++| ++|+++|++++.+++ +.+.|.... ........++..+++.++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~-~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTE-ADKEAALARITGTTDLDD 79 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHhCeEEeCCHHH
Confidence 568999999999999999999998 899999999987643 222221000 000001125677778765
Q ss_pred hccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhh
Q 014700 196 ALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMN 273 (420)
Q Consensus 196 al~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~ 273 (420)
+++||+||+|+|.+. ..++++++.++++++++|++.+.|+..+ .+.+.++.+ ..+ +..-|..+..+..
T Consensus 80 -~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~-------~la~~~~~~-~r~-ig~h~~~P~~~~~ 149 (282)
T PRK05808 80 -LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT-------ELAAATKRP-DKV-IGMHFFNPVPVMK 149 (282)
T ss_pred -hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHHhhCCC-cce-EEeeccCCcccCc
Confidence 789999999998643 4689999999999999998888887653 233433322 111 1112222211111
Q ss_pred cCCeEEEE-ecCCHHHHHHHHHHHhcCCceEEEcCChhHH
Q 014700 274 KLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGV 312 (420)
Q Consensus 274 g~~t~i~i-a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~ 312 (420)
.. . ++. .+.+++..+.+.++|+..|..+....|..|.
T Consensus 150 ~v-e-v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~ 187 (282)
T PRK05808 150 LV-E-IIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGF 187 (282)
T ss_pred cE-E-EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccCh
Confidence 11 1 221 2457899999999999999988877776553
No 73
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.41 E-value=6.2e-12 Score=123.84 Aligned_cols=181 Identities=19% Similarity=0.226 Sum_probs=117.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh------cCC----CCCCCCC---CCCCceEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK------HCN----CRYFPEQ---KLPENVIATTDA 193 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~------g~~----~~~l~~~---~l~~~i~a~td~ 193 (420)
++||+|||+|.||..+|..|+.+| ++|++||++++.++...+. +.. ...+... .+..++..+++.
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 469999999999999999999998 8999999999877643321 000 0000000 012345666777
Q ss_pred HHhccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHH
Q 014700 194 KTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFAL 269 (420)
Q Consensus 194 ~eal~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~ 269 (420)
+++++||+||+|+|.+. .+++++++.+++++++++++.++|+... .+.+.+..+ ..+.- ..-|....
T Consensus 81 -~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~-------~la~~~~~~-~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 81 -ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA-------EIATALERK-DRFIGMHWFNPAPVM 151 (291)
T ss_pred -HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHH-------HHHhhcCCc-ccEEEEecCCCcccC
Confidence 46799999999999764 7888899999899999999988887643 233333221 11111 11121111
Q ss_pred HHhhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHH
Q 014700 270 ELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLA 323 (420)
Q Consensus 270 ev~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~A 323 (420)
. . ..++-+ ..+++.++++.++++..|..+....|.-|-...+++.|.+.
T Consensus 152 ~----~-vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ 201 (291)
T PRK06035 152 K----L-IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLL 201 (291)
T ss_pred c----c-EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHH
Confidence 1 0 111111 23688899999999999999888888766544444444433
No 74
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.40 E-value=3.7e-11 Score=118.52 Aligned_cols=171 Identities=18% Similarity=0.260 Sum_probs=110.7
Q ss_pred hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-----------HhcCCCCCCCCCCCCCceEEeCC
Q 014700 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-----------EKHCNCRYFPEQKLPENVIATTD 192 (420)
Q Consensus 124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~-----------~~g~~~~~l~~~~l~~~i~a~td 192 (420)
|..++||+|||+|.||..||..|+.+| ++|++|+++++.++... +.|...... -......+...++
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 77 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEE-ADATLGRIRCTTN 77 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhceEeeCC
Confidence 345679999999999999999999998 99999999987765322 111100000 0000113455566
Q ss_pred HHHhccCCcEEEEccC--hhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccH
Q 014700 193 AKTALLGADYCLHAMP--VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFA 268 (420)
Q Consensus 193 ~~eal~~aDiVIlaVp--~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a 268 (420)
.+ ++++||+||.||| .+....++.++.+.++++++|++.+.|+.... +.+.++.+. ..+.++..|..
T Consensus 78 ~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~-------l~~~~~~~~r~~g~h~~~pp~~- 148 (295)
T PLN02545 78 LE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR-------LASATQRPQQVIGMHFMNPPPI- 148 (295)
T ss_pred HH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCcceEEEeccCCccc-
Confidence 64 5799999999999 55577788888888889998887777776532 233332210 01112222221
Q ss_pred HHHhhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 269 LELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 269 ~ev~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
.....++.+ ..+++.+++++++|+..|..+.+..|..|
T Consensus 149 -----~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g 187 (295)
T PLN02545 149 -----MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG 187 (295)
T ss_pred -----CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc
Confidence 111222222 34788899999999999998888777654
No 75
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.37 E-value=3.3e-11 Score=117.94 Aligned_cols=220 Identities=15% Similarity=0.184 Sum_probs=131.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCH-HHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA-KTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~-~eal~~aDiVIl 205 (420)
+|+|+|+|+|.||..+|..|.++| +.|.+++++...........+...+ ..+.+. .+++.++|+||+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g--~~v~i~g~d~~~~~~~~a~~lgv~d----------~~~~~~~~~~~~~aD~Viv 70 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG--LVVRIIGRDRSAATLKAALELGVID----------ELTVAGLAEAAAEADLVIV 70 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC--CeEEEEeecCcHHHHHHHhhcCccc----------ccccchhhhhcccCCEEEE
Confidence 689999999999999999999999 7887776665432222222111111 111222 456778999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVAS 283 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~--~~~~~vl~GP~~a~ev~~g~~t~i~ia~ 283 (420)
|||-..+.++++++.++++++++|..++. +- ..+.+.+.+..+.. ....--+.||.--.+...+....++...
T Consensus 71 avPi~~~~~~l~~l~~~l~~g~iv~Dv~S-~K----~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 71 AVPIEATEEVLKELAPHLKKGAIVTDVGS-VK----SSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred eccHHHHHHHHHHhcccCCCCCEEEeccc-cc----HHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCC
Confidence 99999999999999999999999987753 21 12334455544331 1111123555311123344433222222
Q ss_pred -CCHHHHHHHHHHHhcCCceEEEcCChhHHHHH---HHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHHcC
Q 014700 284 -KDRKLANAVQQLLASKHLRISTSSDVTGVEIA---GALKNVLAIAAGI-VVGMNLGNNSMAALVAQGCSEIRWLATKMG 358 (420)
Q Consensus 284 -~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~---~alkNv~Ai~~G~-~~gl~lg~N~~~al~~~~~~E~~~lA~a~G 358 (420)
.+.+.++++.++++..|-+++..+.-.+++.. ..|.|+++.+.+. ......-......+..-+++.+.++ .+
T Consensus 146 ~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~~frd~tRi---a~ 222 (279)
T COG0287 146 GTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASGGFRDITRI---AS 222 (279)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhccccchhhHHHH---Hc
Confidence 34678899999999999888887655555543 4456666665543 2222211111234455566644444 35
Q ss_pred CChhhhhh
Q 014700 359 AKPATITG 366 (420)
Q Consensus 359 i~~~t~~~ 366 (420)
.+|+...+
T Consensus 223 ~~P~m~~d 230 (279)
T COG0287 223 SDPEMYAD 230 (279)
T ss_pred CChHHHHH
Confidence 56654443
No 76
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.37 E-value=6.4e-11 Score=118.13 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=102.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i-~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.++|+|||+|+||.++|..|.+.| ++|++++++....... .+.| +... +++++++.||+|++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG--~~Vvv~~r~~~~s~~~A~~~G--------------~~~~-s~~eaa~~ADVVvL 79 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSG--VDVVVGLREGSKSWKKAEADG--------------FEVL-TVAEAAKWADVIMI 79 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCC--CEEEEEECCchhhHHHHHHCC--------------CeeC-CHHHHHhcCCEEEE
Confidence 479999999999999999999998 8999888765433332 2222 2222 77888999999999
Q ss_pred ccChhhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH-------HhhcCCe
Q 014700 206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-------LMNKLPT 277 (420)
Q Consensus 206 aVp~~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e-------v~~g~~t 277 (420)
+||+....+++ +++.++++++++| ++.-|+.... .....+.. .+ .+...|+.+.+ ...|.+.
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~-------~~~~p~~~-~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~ 149 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF-------GQIVPPAD-VD-VIMVAPKGPGHLVRREYEEGGGVPC 149 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh-------ceeccCCC-Cc-EEEeCCCCCchhhhhhhhcCCCceE
Confidence 99998889998 7899999988877 6667876532 12222221 22 34555776654 3344443
Q ss_pred EEEEec-CCHHHHHHHHHHHhcCCce
Q 014700 278 AMVVAS-KDRKLANAVQQLLASKHLR 302 (420)
Q Consensus 278 ~i~ia~-~d~e~~~~l~~ll~~~g~~ 302 (420)
.+.+.. .+.+..+.+..++...|..
T Consensus 150 l~av~~d~t~~a~~~a~~l~~aiG~~ 175 (330)
T PRK05479 150 LIAVHQDASGNAKDLALAYAKGIGGT 175 (330)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 331222 2367778888899887654
No 77
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.34 E-value=8.4e-11 Score=117.04 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=105.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~-~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.+||+|||+|+||.++|..|.++| ++|+++++. .+..+.+.+.| +... +.+++++.||+|++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG--~~Viv~~~~~~~~~~~a~~~G--------------v~~~-s~~ea~~~ADiVvL 65 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG--LNVIVGLRKGGASWKKATEDG--------------FKVG-TVEEAIPQADLIMN 65 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC--CeEEEEECcChhhHHHHHHCC--------------CEEC-CHHHHHhcCCEEEE
Confidence 479999999999999999999998 788776654 34444444433 2333 57788899999999
Q ss_pred ccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH-H------hhcCCe
Q 014700 206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-L------MNKLPT 277 (420)
Q Consensus 206 aVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e-v------~~g~~t 277 (420)
++|++ +...+++++.+.++++. +|++.-|+.... +...++.. . -.+...|+.+.+ + ..|.+.
T Consensus 66 aVpp~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~-------~~~~~~~~-~-~VvrvmPn~p~~~vr~~~~~G~G~~~ 135 (314)
T TIGR00465 66 LLPDEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIHF-------VQIVPPKD-V-DVVMVAPKGPGTLVREEYKEGFGVPT 135 (314)
T ss_pred eCCcHhHHHHHHHHHHhhCCCCc-EEEEeCCccHhh-------ccccCCCC-C-cEEEECCCCCcHHHHHHhhcCCCeeE
Confidence 99988 77777788988887775 788888987542 33344431 1 256788887776 3 445443
Q ss_pred EEEEe-cCCHHHHHHHHHHHhcCCce
Q 014700 278 AMVVA-SKDRKLANAVQQLLASKHLR 302 (420)
Q Consensus 278 ~i~ia-~~d~e~~~~l~~ll~~~g~~ 302 (420)
.+.+. ..+.+..+.+..+|+..|..
T Consensus 136 l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 136 LIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 32222 23566778899999988766
No 78
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.34 E-value=4.4e-11 Score=126.21 Aligned_cols=164 Identities=15% Similarity=0.207 Sum_probs=109.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH-----------hcCCCCCCCCC---CCCCceEEeC
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPEQ---KLPENVIATT 191 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~-----------~g~~~~~l~~~---~l~~~i~a~t 191 (420)
..+||+|||+|.||..||..|+++| ++|++|+++++.+++..+ .|. +... ....+++.++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~----~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGK----LTAEECERTLKRLIPVT 77 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHhccEEeC
Confidence 3579999999999999999999999 999999999988765322 111 0000 1224577888
Q ss_pred CHHHhccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECccc
Q 014700 192 DAKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSF 267 (420)
Q Consensus 192 d~~eal~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~ 267 (420)
++++ +.+||+||.|+|.. ..+.++.++..+.+++++|.+-+.++... .+.+.+..+. ..+.++ .|..
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~-------~iA~~~~~p~r~~G~HFf-~Pap 148 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT-------AIAAGLARPERVAGLHFF-NPAP 148 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH-------HHHHhcCcccceEEEecc-Cccc
Confidence 9876 67999999999953 35566777888888888877666556542 1233333211 111122 2211
Q ss_pred HHHHhhcCCeEEEEecC---CHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 268 ALELMNKLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 268 a~ev~~g~~t~i~ia~~---d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
.. ..+.+.++ +++.++++.++++..|...++..|..|
T Consensus 149 v~-------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pG 188 (503)
T TIGR02279 149 VM-------ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPG 188 (503)
T ss_pred cC-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCC
Confidence 11 12333333 789999999999999998888777554
No 79
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.33 E-value=1.2e-10 Score=123.13 Aligned_cols=168 Identities=17% Similarity=0.209 Sum_probs=109.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTDAK 194 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i-----------~~~g~~~~~l~~~~l~~~i~a~td~~ 194 (420)
..+||+|||+|.||..||..|+.+| ++|++||++++.+++. .+.|.-.. ......-.++..+++++
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~-~~~~~~~~~i~~~~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTA-EQADAALARLRPVEALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHhCeEEeCCHH
Confidence 3578999999999999999999999 9999999999877663 22221000 00001123467788887
Q ss_pred HhccCCcEEEEccChh-h-HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHH
Q 014700 195 TALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALE 270 (420)
Q Consensus 195 eal~~aDiVIlaVp~~-~-l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~e 270 (420)
+ +.+||+||.||+.. . .+.++.++....++++++.+-+.++.++ .+.+.+..+. ..+.++. |....
T Consensus 83 ~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~-------~la~~~~~p~r~~G~hff~-Pa~v~- 152 (507)
T PRK08268 83 D-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT-------AIAAALKHPERVAGLHFFN-PVPLM- 152 (507)
T ss_pred H-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCcccEEEEeecC-CcccC-
Confidence 6 67999999999954 3 4445577777778888887655567653 2333332210 1112222 22211
Q ss_pred HhhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 271 LMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 271 v~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
+-..++.+ .+++.++++.++++..|...++..|..|
T Consensus 153 -----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG 190 (507)
T PRK08268 153 -----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG 190 (507)
T ss_pred -----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 11222332 4788999999999999988887777544
No 80
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.32 E-value=2.1e-10 Score=114.51 Aligned_cols=171 Identities=15% Similarity=0.194 Sum_probs=111.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh---c---CCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---H---CNCRYFPEQKLPENVIATTDAKTALLG 199 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~---g---~~~~~l~~~~l~~~i~a~td~~eal~~ 199 (420)
.++||+|||+|.||..||..|+.+| ++|++||++++..+.+.+. . .....+.......++..++++++++.+
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 3579999999999999999999998 9999999998765543221 0 000001111123467778899999999
Q ss_pred CcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHHhhcC
Q 014700 200 ADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALELMNKL 275 (420)
Q Consensus 200 aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev~~g~ 275 (420)
||+||.|+|.. .-+.+++++..+++++++|.+.+.++... .+.+.+..+ ..+... ..|.+...
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s-------~la~~~~~p-~R~~g~HffnP~~~~p----- 150 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPT-------DFYARATHP-ERCVVGHPFNPVYLLP----- 150 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHH-------HHHHhcCCc-ccEEEEecCCccccCc-----
Confidence 99999999953 35667788999999999777666655432 233434332 122221 22322211
Q ss_pred CeEEEEe-cCCHHHHHHHHHHHhcCCceEEEc-CChhH
Q 014700 276 PTAMVVA-SKDRKLANAVQQLLASKHLRISTS-SDVTG 311 (420)
Q Consensus 276 ~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g 311 (420)
..-++.+ ..+++.++.+.++++..|...+.. .|+-|
T Consensus 151 LVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG 188 (321)
T PRK07066 151 LVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG 188 (321)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc
Confidence 0112222 246889999999999999776665 57654
No 81
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.31 E-value=7.2e-11 Score=130.34 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=109.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.+||+|||+|.||.+++..|.++|..++|++|+|+++..+.+.+.|... ...++.++++.++|+||+|
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVID------------RGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCC------------cccCCHHHHhcCCCEEEEC
Confidence 4789999999999999999999873358999999998877766644210 1234677778899999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCe---EEEECcc-----cHH-HHhhcCCe
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF---IALSGPS-----FAL-ELMNKLPT 277 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~---~vl~GP~-----~a~-ev~~g~~t 277 (420)
+|.+.++++++++.++++++++|+.+. ++.... .+.+.+.++.....+ ..+.|+. .+. +...+...
T Consensus 71 vp~~~~~~vl~~l~~~~~~~~ii~d~~-svk~~~----~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~ 145 (735)
T PRK14806 71 VPVLAMEKVLADLKPLLSEHAIVTDVG-STKGNV----VDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKV 145 (735)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEcC-CCchHH----HHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeE
Confidence 999999999999999888777766554 444222 223333332210000 0112222 111 23344444
Q ss_pred EEEEe-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 014700 278 AMVVA-SKDRKLANAVQQLLASKHLRISTSSD 308 (420)
Q Consensus 278 ~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~D 308 (420)
.++.. ..+++..+.+.++|+..|..++..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~ 177 (735)
T PRK14806 146 ILTPLAETDPAALARVDRLWRAVGADVLHMDV 177 (735)
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 34332 34677889999999999987766543
No 82
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.27 E-value=1.9e-10 Score=113.26 Aligned_cols=169 Identities=14% Similarity=0.194 Sum_probs=108.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-----------HhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-----------EKHCNCRYFPEQKLPENVIATTDAKT 195 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~-----------~~g~~~~~l~~~~l~~~i~a~td~~e 195 (420)
+.||+|||+|.||..||..|+.+| ++|++||++++.++... +.|.... ........+++.++|++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~l~~~~~~~- 80 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTE-RERDAALARLRFTTDLG- 80 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCCh-hhHHHHHhCeEeeCCHH-
Confidence 469999999999999999999998 99999999998766522 2221000 00001124677888985
Q ss_pred hccCCcEEEEccChh--hHHHHHHHhhhcC-CCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeE--EEECcccHHH
Q 014700 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYV-DPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALE 270 (420)
Q Consensus 196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l-~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~--vl~GP~~a~e 270 (420)
++++||+||.|+|.. ..+.++.++..++ ++++++++.+.++.... +.+....+ ..+. -+..|.+..
T Consensus 81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~-------la~~~~~~-~r~~g~hf~~P~~~~- 151 (286)
T PRK07819 81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK-------LAAATKRP-GRVLGLHFFNPVPVL- 151 (286)
T ss_pred HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCC-ccEEEEecCCCcccC-
Confidence 479999999999954 3556667777777 78999988887666432 22322221 1111 112222111
Q ss_pred HhhcCCeEEEEecCCHHHHHHHHHHHh-cCCceEEEcCChhH
Q 014700 271 LMNKLPTAMVVASKDRKLANAVQQLLA-SKHLRISTSSDVTG 311 (420)
Q Consensus 271 v~~g~~t~i~ia~~d~e~~~~l~~ll~-~~g~~v~~s~Di~g 311 (420)
+....+.....+++.++++.+++. ..|..+....|..|
T Consensus 152 ---~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG 190 (286)
T PRK07819 152 ---PLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSG 190 (286)
T ss_pred ---ceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC
Confidence 111222223567899999999987 47877776677544
No 83
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.24 E-value=1.8e-11 Score=106.14 Aligned_cols=100 Identities=25% Similarity=0.283 Sum_probs=67.0
Q ss_pred hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
....+||+|||+|++|.+++..|.++| |.|.. ++|+++..+++... +++ ....++++.+.++|+
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag--~~v~~v~srs~~sa~~a~~~------~~~-------~~~~~~~~~~~~aDl 71 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAG--HEVVGVYSRSPASAERAAAF------IGA-------GAILDLEEILRDADL 71 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTT--SEEEEESSCHH-HHHHHHC--------TT------------TTGGGCC-SE
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCCcccccccccc------ccc-------ccccccccccccCCE
Confidence 344689999999999999999999999 88875 57887666665542 111 122356677899999
Q ss_pred EEEccChhhHHHHHHHhhhc--CCCCCeEEEeccCCCc
Q 014700 203 CLHAMPVQFSSSFLEGISDY--VDPGLPFISLSKGLEL 238 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~--l~~~~iVVs~snGi~~ 238 (420)
+|++||++.+.+++++|... ..++++|+.++-.+..
T Consensus 72 v~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 72 VFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp EEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred EEEEechHHHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence 99999999999999999877 7789999998844443
No 84
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.20 E-value=2.8e-10 Score=104.56 Aligned_cols=164 Identities=22% Similarity=0.336 Sum_probs=102.3
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-------CCCCCCC---CCCCCceEEeCCHHHhcc
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-------NCRYFPE---QKLPENVIATTDAKTALL 198 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-------~~~~l~~---~~l~~~i~a~td~~eal~ 198 (420)
||+|||+|.||..+|..++.+| ++|++||++++.++...+.-. ....+.. .....++..++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 7999999999999999999998 999999999986544332100 0000000 01124678899999876
Q ss_pred CCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeE--EEECcccHHHHhhc
Q 014700 199 GADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALELMNK 274 (420)
Q Consensus 199 ~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~--vl~GP~~a~ev~~g 274 (420)
+||+||-|+|. ..-++++.++..++++++++.+.+.++... .+.+.+..+ ..+. -+..|.+...+
T Consensus 78 ~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~-------~la~~~~~p-~R~ig~Hf~~P~~~~~l--- 146 (180)
T PF02737_consen 78 DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS-------ELAAALSRP-ERFIGMHFFNPPHLMPL--- 146 (180)
T ss_dssp TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH-------HHHTTSSTG-GGEEEEEE-SSTTT--E---
T ss_pred hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH-------HHHhccCcC-ceEEEEecccccccCce---
Confidence 99999999995 457889999999999999998888777653 233333332 1221 12334433211
Q ss_pred CCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 014700 275 LPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSD 308 (420)
Q Consensus 275 ~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~D 308 (420)
.-++.+ ..+++.++++..+++..|.......|
T Consensus 147 --VEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 147 --VEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp --EEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred --EEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 112222 34688999999999999988776655
No 85
>PLN02712 arogenate dehydrogenase
Probab=99.17 E-value=3.6e-09 Score=115.25 Aligned_cols=177 Identities=12% Similarity=0.123 Sum_probs=113.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl 205 (420)
.|||+|||+|.||.++|..|.+.| ++|.+|+|+... +...+.| +...+++++++ .++|+||+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G--~~V~~~dr~~~~-~~A~~~G--------------v~~~~d~~e~~~~~aDvViL 114 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG--HTVLAHSRSDHS-LAARSLG--------------VSFFLDPHDLCERHPDVILL 114 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHH-HHHHHcC--------------CEEeCCHHHHhhcCCCEEEE
Confidence 579999999999999999999988 899999998543 3333322 23455777744 56999999
Q ss_pred ccChhhHHHHHHHhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 206 AMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 206 aVp~~~l~~vl~~i~-~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
|||...+.++++++. ++++++++|+++.. +- ..+.+.+.+.++... ...--+.||.....-..+.. +++.
T Consensus 115 avP~~~~~~vl~~l~~~~l~~g~iVvDv~S-vK----~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~--~~~~ 187 (667)
T PLN02712 115 CTSIISTENVLKSLPLQRLKRNTLFVDVLS-VK----EFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR--FVYE 187 (667)
T ss_pred cCCHHHHHHHHHhhhhhcCCCCeEEEECCC-Cc----HHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc--EEEe
Confidence 999999999999986 67888999998852 22 123344555543210 11112345553222122332 2222
Q ss_pred ----cCC---HHHHHHHHHHHhcCCceEEEcCChhHHHHH---HHHHHHHHHHHH
Q 014700 283 ----SKD---RKLANAVQQLLASKHLRISTSSDVTGVEIA---GALKNVLAIAAG 327 (420)
Q Consensus 283 ----~~d---~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~---~alkNv~Ai~~G 327 (420)
+.+ .+.++.+.++++..|.+++..+.-..+++. ..|.|+++....
T Consensus 188 ~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~ 242 (667)
T PLN02712 188 KVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLE 242 (667)
T ss_pred eccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 245677789999999998877654444443 345555554443
No 86
>PLN02712 arogenate dehydrogenase
Probab=99.16 E-value=1.7e-09 Score=117.78 Aligned_cols=164 Identities=17% Similarity=0.159 Sum_probs=104.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiVI 204 (420)
..|||+|||+|.||.++|..|.+.| ++|.+|+|+.+. +...+.| +...+++++++. .+|+||
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G--~~V~~~dr~~~~-~~a~~~G--------------v~~~~~~~el~~~~aDvVI 430 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG--HTVLAYSRSDYS-DEAQKLG--------------VSYFSDADDLCEEHPEVIL 430 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc--CEEEEEECChHH-HHHHHcC--------------CeEeCCHHHHHhcCCCEEE
Confidence 3589999999999999999999988 899999998643 3333322 234457777664 589999
Q ss_pred EccChhhHHHHHHHhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE-ECcccHHHHh-hc---CCe-
Q 014700 205 HAMPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALELM-NK---LPT- 277 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~-~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl-~GP~~a~ev~-~g---~~t- 277 (420)
+|||...+.++++++.. .++++++|++++.+-. ...+.+.+.++.. ..++ .-|.++.+.. .| .+.
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~-----~~~~~~~~~l~~~---~~~v~~HPm~G~e~~~~G~~~~~~l 502 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKE-----FPRNLFLQHLPQD---FDILCTHPMFGPESGKNGWNNLAFV 502 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccH-----HHHHHHHHhccCC---CceEeeCCCCCccccccchhhhhhh
Confidence 99999999999998875 6788999999864311 1223444444321 1122 2233322211 01 110
Q ss_pred --EEEEecC--CHHHHHHHHHHHhcCCceEEEcCChhHHHH
Q 014700 278 --AMVVASK--DRKLANAVQQLLASKHLRISTSSDVTGVEI 314 (420)
Q Consensus 278 --~i~ia~~--d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~ 314 (420)
...+.+. ..+.++.+.++++..|.+++..+--..++.
T Consensus 503 f~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~ 543 (667)
T PLN02712 503 FDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWH 543 (667)
T ss_pred ccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHH
Confidence 0112221 234566777999999998877654444443
No 87
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.16 E-value=2.5e-09 Score=105.20 Aligned_cols=208 Identities=16% Similarity=0.143 Sum_probs=124.2
Q ss_pred CeEEEEcccH--------------------HHHHHHHHHHhcCCCCeEEEEeCCHHHH-----HHHHHhcCCCCCCCCCC
Q 014700 128 NKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPAVC-----QSINEKHCNCRYFPEQK 182 (420)
Q Consensus 128 mkI~IIGaGa--------------------mG~alA~~La~aG~~~~V~l~~r~~~~~-----~~i~~~g~~~~~l~~~~ 182 (420)
|||.|.|+|+ -|.+||.+|+++| |+|++|+|+++.. +.+.+.|
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAG--heV~V~Drnrsa~e~e~~e~LaeaG---------- 68 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAG--HDVVLAEPNREFMSDDLWKKVEDAG---------- 68 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCC--CEEEEEeCChhhhhhhhhHHHHHCC----------
Confidence 6889999987 4889999999999 9999999987644 3455543
Q ss_pred CCCceEEeCCHHHhccCCcEEEEccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh--CCCCCCe
Q 014700 183 LPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL--RNPRQPF 259 (420)
Q Consensus 183 l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~l--g~~~~~~ 259 (420)
+.+.+++.++++++|+||+|+|.. +++++++.+.+.++++++||.++. +++++ +...+.+.+ +.. ++
T Consensus 69 ----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~ST-IsP~t---~~~~~e~~l~~~r~--d~ 138 (341)
T TIGR01724 69 ----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCT-VSPVV---LYYSLEKILRLKRT--DV 138 (341)
T ss_pred ----CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCC-CCHHH---HHHHHHHHhhcCcc--cc
Confidence 355668889999999999999965 588998889899999999999875 66653 233343322 221 11
Q ss_pred EEEEC-----cccHHH---HhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEc-CChhHHH--HHHHHHHHHHHHHHH
Q 014700 260 IALSG-----PSFALE---LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS-SDVTGVE--IAGALKNVLAIAAGI 328 (420)
Q Consensus 260 ~vl~G-----P~~a~e---v~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~e--~~~alkNv~Ai~~G~ 328 (420)
.+.+- |....+ +..+... .--+-.+++..+++.++.++.+...+.. .|+.+.. ++.++--+ ...|+
T Consensus 139 ~v~s~HP~~vP~~~~~~~~~~~~~~~-~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta~--~~~gi 215 (341)
T TIGR01724 139 GISSMHPAAVPGTPQHGHYVIGGKPT-AGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTAV--ALAGV 215 (341)
T ss_pred CeeccCCCCCCCCCCCceeeeccccc-cccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHH--HHHHH
Confidence 11111 222111 0011110 0001135788899999999987776653 3443321 22221111 12233
Q ss_pred HHhcccc-------hhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700 329 VVGMNLG-------NNSMAALVAQGCSEIRWLATKMGAK 360 (420)
Q Consensus 329 ~~gl~lg-------~N~~~al~~~~~~E~~~lA~a~Gi~ 360 (420)
++-...+ ....-..+...+.-+..|-+..|++
T Consensus 216 l~y~~~~t~i~~ap~~~~~~~~~~~l~~~a~l~~~~Gi~ 254 (341)
T TIGR01724 216 LDYYYVGTQIINAPKEMIEKQILMTLQTMASLVETSGVE 254 (341)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3222111 1112233455666677777777764
No 88
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=2.3e-09 Score=100.65 Aligned_cols=148 Identities=8% Similarity=0.139 Sum_probs=105.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh---ccCCcEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYCL 204 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea---l~~aDiVI 204 (420)
|+|+.||+|.||..|..+|.+.| |+|..||++++.++++...+. +..+++++. +...-+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g--hdvV~yD~n~~av~~~~~~ga--------------~~a~sl~el~~~L~~pr~vW 64 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG--HDVVGYDVNQTAVEELKDEGA--------------TGAASLDELVAKLSAPRIVW 64 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC--CeEEEEcCCHHHHHHHHhcCC--------------ccccCHHHHHHhcCCCcEEE
Confidence 79999999999999999999998 999999999999999988753 223345544 45678999
Q ss_pred EccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700 205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS 283 (420)
Q Consensus 205 laVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~ 283 (420)
+.||.. .+.++++++.+++.++.+||.--|.--.++.+.. +.+.+. |....++....|+- ......++++++
T Consensus 65 lMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~-~~l~~k-gi~flD~GTSGG~~-----G~~~G~~lMiGG 137 (300)
T COG1023 65 LMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRA-KLLAEK-GIHFLDVGTSGGVW-----GAERGYCLMIGG 137 (300)
T ss_pred EEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHH-HHHHhc-CCeEEeccCCCCch-----hhhcCceEEecC
Confidence 999975 7999999999999999999987765444433222 222221 22112222222221 112334566655
Q ss_pred CCHHHHHHHHHHHhcC
Q 014700 284 KDRKLANAVQQLLASK 299 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~ 299 (420)
+.+.+++++++|...
T Consensus 138 -~~~a~~~~~pif~~l 152 (300)
T COG1023 138 -DEEAVERLEPIFKAL 152 (300)
T ss_pred -cHHHHHHHHHHHHhh
Confidence 788999999999874
No 89
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.10 E-value=1.8e-09 Score=109.67 Aligned_cols=166 Identities=13% Similarity=0.179 Sum_probs=107.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..+||+|||. |.||..+|..|.+.. +++|+.+|+.++ ...++++++++||+||
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi 56 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP-------------------------GSLDPATLLQRADVLI 56 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence 4579999999 999999999999752 389999998521 1125677789999999
Q ss_pred EccChhhHHHHHHHhhhc---CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE
Q 014700 205 HAMPVQFSSSFLEGISDY---VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV 281 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~---l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i 281 (420)
+|||...+.++++++.++ ++++++|..+.. +-. .+.+.+.+. +.......-+.||... ..+++....++
T Consensus 57 lavPv~~~~~~l~~l~~~~~~l~~~~iVtDVgS-vK~----~i~~~~~~~-~~~fVG~HPMaG~E~s-~lf~g~~~ilt- 128 (370)
T PRK08818 57 FSAPIRHTAALIEEYVALAGGRAAGQLWLDVTS-IKQ----APVAAMLAS-QAEVVGLHPMTAPPKS-PTLKGRVMVVC- 128 (370)
T ss_pred EeCCHHHHHHHHHHHhhhhcCCCCCeEEEECCC-CcH----HHHHHHHhc-CCCEEeeCCCCCCCCC-cccCCCeEEEe-
Confidence 999999999999999876 789999987652 211 111222121 1110011123444322 23445543332
Q ss_pred ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHH---HHHHHHH
Q 014700 282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGAL---KNVLAIA 325 (420)
Q Consensus 282 a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~al---kNv~Ai~ 325 (420)
.....+..+.++++++..|.+++..+--.+++..+.+ .|+.+++
T Consensus 129 p~~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~ 175 (370)
T PRK08818 129 EARLQHWSPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLA 175 (370)
T ss_pred CCCchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455688999999999998877665666655554 4654443
No 90
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.08 E-value=2.5e-08 Score=96.06 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=118.4
Q ss_pred CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 153 LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 153 ~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
++|.+++|++++.+.+.+.. ++.++.+.++++.++|+||+|||++.++++++++.+.+.++++||++
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~-------------g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~ 76 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKEL-------------GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISI 76 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHc-------------CcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEe
Confidence 78999999998887776531 23455677787889999999999999999999998877778899999
Q ss_pred ccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-CCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 233 SKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 233 snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
..|+..+ .+.+.++.. .-.+...|+.+..+..+. +.+..+. .+++..+.++++|+..|..+...++...
T Consensus 77 ~agi~~~-------~l~~~~~~~--~~ivR~mPn~~~~~~~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~ 146 (245)
T TIGR00112 77 AAGVTLE-------KLSQLLGGT--RRVVRVMPNTPAKVGAGV-TAIAANANVSEEDRALVLALFKAVGEVVELPEALMD 146 (245)
T ss_pred cCCCCHH-------HHHHHcCCC--CeEEEECCChHHHHhCCe-EEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcc
Confidence 9999864 355666532 235778999887776553 3333332 3566778999999999988776544321
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhc
Q 014700 312 VEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367 (420)
Q Consensus 312 ~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l 367 (420)
. +....|. ..+++...+..+..-+.+.|++++....+
T Consensus 147 ~---------~talsgs----------gPA~~~~~~~al~~~~v~~Gl~~~~A~~l 183 (245)
T TIGR00112 147 A---------VTALSGS----------GPAYVFLFIEALADAGVKQGLPRELALEL 183 (245)
T ss_pred h---------HHhhccC----------cHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1111110 12333444455555677778877765553
No 91
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.01 E-value=2.7e-09 Score=107.14 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=88.7
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
|+-...++.++.+.|+ |.+ ...+.++. .|+|+|||+|.||.++|..|...| ++|.+|+|+++.....
T Consensus 119 R~~~~~~~~~~~~~~~----w~~---~~~~~~l~--g~~VgIIG~G~IG~~vA~~L~~~G--~~V~~~d~~~~~~~~~-- 185 (330)
T PRK12480 119 RRFPDIERRVQAHDFT----WQA---EIMSKPVK--NMTVAIIGTGRIGAATAKIYAGFG--ATITAYDAYPNKDLDF-- 185 (330)
T ss_pred HhHHHHHHHHHhCCcc----ccc---ccCccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCChhHhhhh--
Confidence 5555667777777662 542 11222333 679999999999999999999887 9999999987532110
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhh-HHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
+...+++++++++||+|++++|... ...++ +++.+.++++.++|++++|-..++
T Consensus 186 ----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~ 241 (330)
T PRK12480 186 ----------------LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINT 241 (330)
T ss_pred ----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCH
Confidence 1123478899999999999999654 44444 567788899999999999987664
No 92
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.99 E-value=7.5e-09 Score=102.19 Aligned_cols=170 Identities=20% Similarity=0.270 Sum_probs=109.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc---C----CCCCCCCC---CCCCceEEeCCHHH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH---C----NCRYFPEQ---KLPENVIATTDAKT 195 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g---~----~~~~l~~~---~l~~~i~a~td~~e 195 (420)
.++||+|||+|.||+.+|..++.+| ++|+++|++++.+++....- + ....+... ..-.++..++++.
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G--~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~- 78 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAG--YDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA- 78 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcC--CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-
Confidence 3689999999999999999999977 99999999977544332110 0 00001111 1123556666776
Q ss_pred hccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHHHH
Q 014700 196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFALEL 271 (420)
Q Consensus 196 al~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~ev 271 (420)
++++||+||-+|+. ..-+++++++-.+.++++++-+-+.++.... +.+.+..+ ..+.. +..|.....+
T Consensus 79 ~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~-------ia~~~~rp-er~iG~HFfNP~~~m~L 150 (307)
T COG1250 79 ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITE-------LAEALKRP-ERFIGLHFFNPVPLMPL 150 (307)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHH-------HHHHhCCc-hhEEEEeccCCCCccee
Confidence 58999999999995 3477888999999999999988888887642 33333221 11211 2334332211
Q ss_pred hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
.-++.+ ..+++.++++.++..+.+.......|..|
T Consensus 151 -----VEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG 186 (307)
T COG1250 151 -----VEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPG 186 (307)
T ss_pred -----EEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc
Confidence 112222 23578899999999998866555566543
No 93
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.96 E-value=1.1e-08 Score=99.22 Aligned_cols=201 Identities=20% Similarity=0.242 Sum_probs=117.4
Q ss_pred HHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhhHHHHHHHhhh
Q 014700 142 MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD 221 (420)
Q Consensus 142 lA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~ 221 (420)
+|..|.++|.+++|+.||++++..+...+.|... ...++ .++++++|+||+|||...+.++++++.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~------------~~~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~ 67 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID------------EASTD-IEAVEDADLVVLAVPVSAIEDVLEEIAP 67 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS------------EEESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee------------eccCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhh
Confidence 5888999886689999999998877776665321 23333 4668999999999999999999999999
Q ss_pred cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCeEEEECc-----ccHH-HHhhcCCeEEEEec-CCHHHHHHH
Q 014700 222 YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGP-----SFAL-ELMNKLPTAMVVAS-KDRKLANAV 292 (420)
Q Consensus 222 ~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~--~~~~~vl~GP-----~~a~-ev~~g~~t~i~ia~-~d~e~~~~l 292 (420)
+++++++|+.+. ++-. .+.+.+.+.++.. .....-+.|| ..+. +.+.+....++... .+.+.++.+
T Consensus 68 ~~~~~~iv~Dv~-SvK~----~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~ 142 (258)
T PF02153_consen 68 YLKPGAIVTDVG-SVKA----PIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV 142 (258)
T ss_dssp GS-TTSEEEE---S-CH----HHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred hcCCCcEEEEeC-CCCH----HHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence 999999998875 2321 2334455544411 1112234555 2222 34455554444333 356788999
Q ss_pred HHHHhcCCceEEEcCChhHHHHHH---HHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700 293 QQLLASKHLRISTSSDVTGVEIAG---ALKNVLAIAAGI-VVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363 (420)
Q Consensus 293 ~~ll~~~g~~v~~s~Di~g~e~~~---alkNv~Ai~~G~-~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t 363 (420)
+++++..|.++...+.-.+++..+ .+.++++.+... .............+...+++.+.+++. .+|+.
T Consensus 143 ~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~l 214 (258)
T PF02153_consen 143 EELWEALGARVVEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGGGFRDMTRIAS---SDPEL 214 (258)
T ss_dssp HHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG---S-HHH
T ss_pred HHHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcchhHHhhccccc---CChHH
Confidence 999999999988765445555443 355555554443 111111122234555667777775543 45543
No 94
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=3.3e-08 Score=98.85 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=110.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH---hccCCcEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYC 203 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e---al~~aDiV 203 (420)
.+.||+||+|.||.-+|..++++| +.|.+|+|+.++.+++.+.+...+ ++....+++| .++..--|
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G--~~VavyNRt~~ktd~f~~~~~~~k---------~i~~~~sieefV~~Le~PRkI 71 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHG--YTVAVYNRTTEKTDEFLAERAKGK---------NIVPAYSIEEFVASLEKPRKI 71 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcC--ceEEEEeCCHHHHHHHHHhCccCC---------CccccCcHHHHHHHhcCCceE
Confidence 468999999999999999999999 999999999999998877653221 2222334444 46778999
Q ss_pred EEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE-ECcccHHHHhhcCCeEEEE
Q 014700 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALELMNKLPTAMVV 281 (420)
Q Consensus 204 IlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl-~GP~~a~ev~~g~~t~i~i 281 (420)
++.|+. ..+..++++|.|++.++.+||.--|..-.+|.++..+.-.+ | +.++ .|-+-.+|-+...|. ++
T Consensus 72 ~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~--G-----i~FvG~GVSGGEeGA~~GPS--iM 142 (473)
T COG0362 72 LLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEK--G-----ILFVGMGVSGGEEGARHGPS--IM 142 (473)
T ss_pred EEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhc--C-----CeEEeccccccccccccCCC--cC
Confidence 999997 66899999999999999999998887777765544332222 2 2222 233333343434443 34
Q ss_pred ecCCHHHHHHHHHHHhcC
Q 014700 282 ASKDRKLANAVQQLLASK 299 (420)
Q Consensus 282 a~~d~e~~~~l~~ll~~~ 299 (420)
.+++++..+.++++|++.
T Consensus 143 pGG~~eay~~v~pil~~I 160 (473)
T COG0362 143 PGGQKEAYELVAPILTKI 160 (473)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 567888899999999863
No 95
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.94 E-value=2e-08 Score=110.40 Aligned_cols=170 Identities=14% Similarity=0.188 Sum_probs=113.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------cCCCCCCCCC---CCCCceEEeCCHHH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKT 195 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------g~~~~~l~~~---~l~~~i~a~td~~e 195 (420)
..+||+|||+|.||..||..++.+| ++|+++|++++.+++..+. ......+... ....+++.++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKG--TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence 4578999999999999999999999 9999999998876543221 0000001110 11246788888854
Q ss_pred hccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700 196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL 271 (420)
Q Consensus 196 al~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev 271 (420)
+.+||+||-||+. ..-++++.++.+++++++++.+.+.++... .+.+.+..+ ..+..+ ..|.+...+
T Consensus 390 -~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~-------~ia~~~~~p-~r~ig~Hff~P~~~~~l 460 (714)
T TIGR02437 390 -FDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS-------LLAKALKRP-ENFCGMHFFNPVHRMPL 460 (714)
T ss_pred -hcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCc-ccEEEEecCCCcccCce
Confidence 7999999999995 347789999999999999998887777653 233333322 112111 223322110
Q ss_pred hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
.-++.+ ..+++.++.+.+++...|...+...|..|
T Consensus 461 -----vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG 496 (714)
T TIGR02437 461 -----VEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPG 496 (714)
T ss_pred -----EeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc
Confidence 112222 24678899999999999988887778654
No 96
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.93 E-value=6.9e-09 Score=100.81 Aligned_cols=222 Identities=18% Similarity=0.198 Sum_probs=139.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC------CCCceEEeCCHHHhccCC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------LPENVIATTDAKTALLGA 200 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~------l~~~i~a~td~~eal~~a 200 (420)
|+||+.||+|.+|..-...++-..-+.+|+++|.+..++..++... -+.|.||.. -..++.+.+|.+.+++++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~-lpiyepgldevv~~crgknlffstdiekai~ea 79 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDK-LPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA 79 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCC-CcccCCCHHHHHHHhcCCceeeecchHHHhhhc
Confidence 5799999999999998888876654578999999998888887754 456778763 246788899999999999
Q ss_pred cEEEEccCh---------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--CCCCeEEEE
Q 014700 201 DYCLHAMPV---------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--PRQPFIALS 263 (420)
Q Consensus 201 DiVIlaVp~---------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~--~~~~~~vl~ 263 (420)
|+||+.|.. .+.++....|+......++|+--+. +... .+|.+...+.. +...+-+++
T Consensus 80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekst-vpv~----aaesi~~il~~n~~~i~fqils 154 (481)
T KOG2666|consen 80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKST-VPVK----AAESIEKILNHNSKGIKFQILS 154 (481)
T ss_pred ceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeecc-ccch----HHHHHHHHHhcCCCCceeEecc
Confidence 999998753 2567777788887777777765432 3332 34455554432 224567889
Q ss_pred CcccHHHHh----hcCCeEEEEecCC-H---HHHHHHHHHHhcCC-ceEEEcCChhHHHHHHHHHHHHHHHHHHHHhccc
Q 014700 264 GPSFALELM----NKLPTAMVVASKD-R---KLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL 334 (420)
Q Consensus 264 GP~~a~ev~----~g~~t~i~ia~~d-~---e~~~~l~~ll~~~g-~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~l 334 (420)
.|.|..|.. .-.|..+.+++.+ + ..++.+..+++..- ..-..+.+....|+.++..|.+.. +.. -
T Consensus 155 npeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafla-----qri-s 228 (481)
T KOG2666|consen 155 NPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLA-----QRI-S 228 (481)
T ss_pred ChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHH-----HHH-h
Confidence 998876521 1245667777654 2 34455555555421 112334444455666655553211 111 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700 335 GNNSMAALVAQGCSEIRWLATKMGAK 360 (420)
Q Consensus 335 g~N~~~al~~~~~~E~~~lA~a~Gi~ 360 (420)
.-|.+.++.-+.-+++..+|.+.|.|
T Consensus 229 sins~salceatgadv~eva~avg~d 254 (481)
T KOG2666|consen 229 SINSMSALCEATGADVSEVAYAVGTD 254 (481)
T ss_pred hhHHHHHHHHhcCCCHHHHHHHhccc
Confidence 12444444444445555566665554
No 97
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.93 E-value=3.2e-08 Score=108.67 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=112.4
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHHhc---C----CCCCCCCC---CCCCceEEeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEKH---C----NCRYFPEQ---KLPENVIATTDAKT 195 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La-~aG~~~~V~l~~r~~~~~~~i~~~g---~----~~~~l~~~---~l~~~i~a~td~~e 195 (420)
++||+|||+|.||..+|..++ .+| ++|+++|++++.++...+.- + ....+... ....+++.++|++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 380 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAG--IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR- 380 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-
Confidence 468999999999999999998 578 99999999987654432210 0 00001000 1124678888885
Q ss_pred hccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL 271 (420)
Q Consensus 196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev 271 (420)
++++||+||-|+|.. .-++++.++.+++++++++.+.+.++.... +.+.+..+ ..+..+ ..|.+...
T Consensus 381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~-------la~~~~~p-~r~~g~HffnP~~~~~- 451 (699)
T TIGR02440 381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ-------IAAAASRP-ENVIGLHYFSPVEKMP- 451 (699)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH-------HHHhcCCc-ccEEEEecCCccccCc-
Confidence 579999999999953 467889999999999999988887777542 23333322 122211 22322111
Q ss_pred hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
..-++.+ ..+++.++.+.++++..|...+...|.-|
T Consensus 452 ----lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG 488 (699)
T TIGR02440 452 ----LVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG 488 (699)
T ss_pred ----eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 1112222 24688999999999999999888788654
No 98
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.91 E-value=3.4e-08 Score=108.66 Aligned_cols=169 Identities=21% Similarity=0.216 Sum_probs=112.5
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHHh---c----CCCCCCCC---CCCCCceEEeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEK---H----CNCRYFPE---QKLPENVIATTDAKT 195 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La-~aG~~~~V~l~~r~~~~~~~i~~~---g----~~~~~l~~---~~l~~~i~a~td~~e 195 (420)
.+||+|||+|.||..+|..++ .+| ++|+++|++++.+++..+. . .....+.. .....+++.++|++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAG--LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR- 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence 578999999999999999999 778 9999999998765443211 0 00000110 01234688888885
Q ss_pred hccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700 196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL 271 (420)
Q Consensus 196 al~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev 271 (420)
++++||+||-|++. ...++++.++.+++++++++.+.+.++.... +.+.+..+ ..+..+ ..|.+...
T Consensus 386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~-------la~~~~~p-~r~ig~Hff~P~~~~~- 456 (708)
T PRK11154 386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ-------IAAAAARP-EQVIGLHYFSPVEKMP- 456 (708)
T ss_pred HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHHhcCcc-cceEEEecCCccccCc-
Confidence 57999999999995 3477889999999999999988887776542 33333322 122211 22332211
Q ss_pred hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
..-++.+ ..+++.++.+..++...|...+...|..|
T Consensus 457 ----lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG 493 (708)
T PRK11154 457 ----LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG 493 (708)
T ss_pred ----eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc
Confidence 1112222 34688899999999999987777677544
No 99
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.90 E-value=3.8e-08 Score=108.33 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=113.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------cCCCCCCCCC---CCCCceEEeCCHHHh
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA 196 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------g~~~~~l~~~---~l~~~i~a~td~~ea 196 (420)
++||+|||+|.||..||..++.+| ++|+++|++++.+++..+. ......+... ....+++.++|+++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 389 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKG--VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG- 389 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence 578999999999999999999999 9999999998865432211 0000001111 12346788888854
Q ss_pred ccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHHHHh
Q 014700 197 LLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFALELM 272 (420)
Q Consensus 197 l~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~ev~ 272 (420)
+++||+||-|+|. ...++++.++.+++++++++.+.+.++... .+.+.+..+ ..+.. +..|.+...
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p-~r~~g~Hff~P~~~~~-- 459 (715)
T PRK11730 390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS-------LLAKALKRP-ENFCGMHFFNPVHRMP-- 459 (715)
T ss_pred hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCC-ccEEEEecCCcccccc--
Confidence 7999999999995 457788999999999999998877777653 233333332 12221 122322211
Q ss_pred hcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 273 NKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 273 ~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
..-++.+ ..+++.++.+..++...|...+...|.-|
T Consensus 460 ---lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 496 (715)
T PRK11730 460 ---LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG 496 (715)
T ss_pred ---eEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc
Confidence 1112222 23688899999999999988887788655
No 100
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.90 E-value=3.2e-08 Score=109.16 Aligned_cols=170 Identities=16% Similarity=0.210 Sum_probs=114.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------cCCCCCCCCC---CCCCceEEeCCHHH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKT 195 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------g~~~~~l~~~---~l~~~i~a~td~~e 195 (420)
.++||+|||+|.||..||..++.+| ++|+++|++++.+++..+. ......+... ....+++.++|++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 410 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKG--LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS- 410 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCC--CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-
Confidence 4578999999999999999999998 9999999999876543221 0000001110 1224678888886
Q ss_pred hccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL 271 (420)
Q Consensus 196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev 271 (420)
++++||+||-||+.. .-++++.++.+++++++++.+.+.++..+ .+.+.+..+ ..+..+ ..|.+...
T Consensus 411 ~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p-~r~ig~Hff~P~~~m~- 481 (737)
T TIGR02441 411 GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK-------DIAAVSSRP-EKVIGMHYFSPVDKMQ- 481 (737)
T ss_pred HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCc-cceEEEeccCCcccCc-
Confidence 479999999999953 47788999999999999998877777653 233333332 122211 22332211
Q ss_pred hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
..-++.+ ..+++.++.+..++...|...+...|..|
T Consensus 482 ----LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG 518 (737)
T TIGR02441 482 ----LLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG 518 (737)
T ss_pred ----eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC
Confidence 1112222 24678899999999999988887788654
No 101
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.89 E-value=5.8e-09 Score=106.76 Aligned_cols=225 Identities=16% Similarity=0.139 Sum_probs=128.5
Q ss_pred CeEEEEcccHHHH-HHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCC-CCCCCCC---CCCCceEEeC--CHHH---hc
Q 014700 128 NKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CRYFPEQ---KLPENVIATT--DAKT---AL 197 (420)
Q Consensus 128 mkI~IIGaGamG~-alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~-~~~l~~~---~l~~~i~a~t--d~~e---al 197 (420)
|||.++|+|+||. .++..|.++| ++|+++++++++++.|++.|.- ....... ..-..+.... +.++ .+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~ 78 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAI 78 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHh
Confidence 7999999999998 5588898888 9999999999999999998642 1111111 1111333331 2232 34
Q ss_pred cCCcEEEEccChhhHHHHHHHhhhcCCCC--------CeEEEeccCCCcchhhhHHHHHHHHh------------CCCCC
Q 014700 198 LGADYCLHAMPVQFSSSFLEGISDYVDPG--------LPFISLSKGLELNTLRMMSQIIPQAL------------RNPRQ 257 (420)
Q Consensus 198 ~~aDiVIlaVp~~~l~~vl~~i~~~l~~~--------~iVVs~snGi~~~t~~~~se~l~~~l------------g~~~~ 257 (420)
.++|+|+++|+...++.+...+.+.+.+. -.|++|.||+.... .+.+.+.+.. +-+ .
T Consensus 79 ~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~--~L~~~V~~~~~~~~~~wi~~~~~f~-~ 155 (381)
T PRK02318 79 AEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTS--FLKKHVLKALSEDEKAWLEEHVGFV-D 155 (381)
T ss_pred cCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHH--HHHHHHHHhCCHHHHHHHHhcCCCC-C
Confidence 58899999999888777777776655332 26899999987642 2233332211 110 0
Q ss_pred CeEEEECcccHHHHhhcCCeEEEEecCCHHHHHHHHHHHhcCC-----ceEEEcCChhHHHHHHHHHHH-H---HHHHHH
Q 014700 258 PFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKH-----LRISTSSDVTGVEIAGALKNV-L---AIAAGI 328 (420)
Q Consensus 258 ~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g-----~~v~~s~Di~g~e~~~alkNv-~---Ai~~G~ 328 (420)
..+-..+|....+ + + +.+.. +...+.+.+.++..+ ..+.+++|+...+|.|+..|- . ....|.
T Consensus 156 t~VDrI~P~~~~~---d-~--~~v~~--E~f~~wviE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~ 227 (381)
T PRK02318 156 SAVDRIVPAQKNE---D-P--LDVTV--EPFSEWIVDKTQFKGALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGY 227 (381)
T ss_pred cHHhcCCCCCCcc---C-C--ccccc--ccceEEEEecccccCCCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHH
Confidence 0111223311000 0 0 00000 011111111111111 157788999999999986642 2 222344
Q ss_pred HHhcc-----cchhHHHHHHHHHHHHHHHHHH-HcCCChhhhh
Q 014700 329 VVGMN-----LGNNSMAALVAQGCSEIRWLAT-KMGAKPATIT 365 (420)
Q Consensus 329 ~~gl~-----lg~N~~~al~~~~~~E~~~lA~-a~Gi~~~t~~ 365 (420)
..|.+ +.+.....++...+.|+..++. +.|++++.+.
T Consensus 228 l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~g~~~~~l~ 270 (381)
T PRK02318 228 LKGYKTIREAILDPSIRAVVKGALEESGAVLIKKYGFDKEEHA 270 (381)
T ss_pred HcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcCCcCHHHHH
Confidence 33332 2344556788889999999995 5688655443
No 102
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.89 E-value=5e-09 Score=105.31 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=86.6
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
|+-...++.++.+.|. |.+. ..+.++. .|+|+|||+|.||.++|..|++ +++.+|..|+++.... ...
T Consensus 119 R~~~~~~~~~~~~~~~----~~~~---~~~~~l~--g~~VgIIG~G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~--~~~ 186 (332)
T PRK08605 119 RHFNQIQTKVREHDFR----WEPP---ILSRSIK--DLKVAVIGTGRIGLAVAKIFAK-GYGSDVVAYDPFPNAK--AAT 186 (332)
T ss_pred cChHHHHHHHHhCCcc----cccc---cccceeC--CCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECCCccHh--HHh
Confidence 5555667777777772 5431 1223343 6899999999999999999954 2338999999876431 111
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhh-HHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
. +...+++++++++||+|++++|... .+.++ ++..+.+++++++|++++|...++
T Consensus 187 -~--------------~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~ 243 (332)
T PRK08605 187 -Y--------------VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT 243 (332)
T ss_pred -h--------------ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH
Confidence 1 1233478899999999999999755 44443 345677889999999999987765
No 103
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.87 E-value=9.4e-09 Score=103.35 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=91.5
Q ss_pred ccCCccccchhhhchhcc-eeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKL-VRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
++-...++.++.+.|.+. ..|.+. ...+.++. .++|+|||+|.||..+|..|...| ++|.+|+|+.+... ..
T Consensus 117 R~~~~~~~~~~~g~W~~~~~~~~~~--~~~g~~L~--gktvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~-~~ 189 (333)
T PRK13243 117 RRLVEADHFVRSGEWKRRGVAWHPL--MFLGYDVY--GKTIGIIGFGRIGQAVARRAKGFG--MRILYYSRTRKPEA-EK 189 (333)
T ss_pred hCHHHHHHHHHcCCCCccccccccc--cccccCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCChhh-HH
Confidence 556677888889988752 113210 11223444 789999999999999999999877 89999998764321 11
Q ss_pred HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
..+ +. ..+++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus 190 ~~~--------------~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 190 ELG--------------AE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred HcC--------------CE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCH
Confidence 111 12 23788999999999999995 4466666 456777899999999999866543
No 104
>PRK07574 formate dehydrogenase; Provisional
Probab=98.85 E-value=1.4e-08 Score=103.77 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=90.1
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
|+-...+|.++.+.|... . ......++. .|+|+|||+|.||..+|++|..-| .+|.+|+|.....+...+
T Consensus 164 R~~~~~~~~~~~g~W~~~---~---~~~~~~~L~--gktVGIvG~G~IG~~vA~~l~~fG--~~V~~~dr~~~~~~~~~~ 233 (385)
T PRK07574 164 RNYEPSHRQAVEGGWNIA---D---CVSRSYDLE--GMTVGIVGAGRIGLAVLRRLKPFD--VKLHYTDRHRLPEEVEQE 233 (385)
T ss_pred cCHHHHHHHHHhCCCCcc---c---ccccceecC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCchhhHhh
Confidence 556667787888877641 1 001112333 689999999999999999999877 999999987522221111
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t 240 (420)
. ++....+++++++.||+|++++|. ..++.++. +....++++.++|++..|-..++
T Consensus 234 ~--------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe 291 (385)
T PRK07574 234 L--------------GLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDR 291 (385)
T ss_pred c--------------CceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhH
Confidence 1 123335789999999999999994 55777773 46677899999999999866543
No 105
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.84 E-value=1.1e-08 Score=102.17 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=98.6
Q ss_pred ccccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700 89 IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (420)
Q Consensus 89 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i 168 (420)
..|+-.+.+|+.|.|.|.. |+ ......+.+++ .+++||||+|.+|.++|+++.. ++.+|..|+|.+. ...
T Consensus 114 ~~R~~~~~~~~~r~g~w~~---~~-~~~~~~~~~l~--gktvGIiG~GrIG~avA~r~~~--Fgm~v~y~~~~~~--~~~ 183 (324)
T COG1052 114 LARRIHEGDRRVREGNWSL---SG-GPDPLLGFDLR--GKTLGIIGLGRIGQAVARRLKG--FGMKVLYYDRSPN--PEA 183 (324)
T ss_pred HhhchHHHHHHHhcCcccc---cC-CcccccccCCC--CCEEEEECCCHHHHHHHHHHhc--CCCEEEEECCCCC--hHH
Confidence 4488899999999998887 32 11223344555 7899999999999999999983 5599999998864 122
Q ss_pred HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 014700 169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQ 246 (420)
Q Consensus 169 ~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t~~~~se 246 (420)
.+.. . .... +++|.++.||+|++.+|. ...+.++. +....++++.++|++..|-..++ ..+.+
T Consensus 184 ~~~~-~------------~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe-~ALi~ 248 (324)
T COG1052 184 EKEL-G------------ARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDE-QALID 248 (324)
T ss_pred Hhhc-C------------ceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCH-HHHHH
Confidence 2211 1 1223 488999999999999995 55777773 45677899999999999976654 23334
Q ss_pred HHHH
Q 014700 247 IIPQ 250 (420)
Q Consensus 247 ~l~~ 250 (420)
.+++
T Consensus 249 AL~~ 252 (324)
T COG1052 249 ALKS 252 (324)
T ss_pred HHHh
Confidence 4443
No 106
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.84 E-value=1.1e-08 Score=93.86 Aligned_cols=96 Identities=19% Similarity=0.281 Sum_probs=71.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|+|||.|.+|..+|..|..-| .+|++|+|...........+ + ...+++|+++.||+|+++
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~~~--------------~-~~~~l~ell~~aDiv~~~ 98 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADEFG--------------V-EYVSLDELLAQADIVSLH 98 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHTT--------------E-EESSHHHHHHH-SEEEE-
T ss_pred CCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhccccc--------------c-eeeehhhhcchhhhhhhh
Confidence 689999999999999999999877 99999999986544233322 2 234889999999999999
Q ss_pred cCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700 207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN 239 (420)
Q Consensus 207 Vp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~ 239 (420)
+|. ...+.++ ++....++++.++|++..|-..+
T Consensus 99 ~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vd 133 (178)
T PF02826_consen 99 LPLTPETRGLINAEFLAKMKPGAVLVNVARGELVD 133 (178)
T ss_dssp SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-
T ss_pred hccccccceeeeeeeeeccccceEEEeccchhhhh
Confidence 994 3454444 34456688999999999986554
No 107
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.84 E-value=1e-08 Score=102.53 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=92.9
Q ss_pred ccccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700 89 IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (420)
Q Consensus 89 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i 168 (420)
..|+-...++.+++|.|++. ...+.++. .++|||||+|++|+.+|.+|..-| .+|.+||+....- .-
T Consensus 114 ~~R~~~~~~~~~~~g~W~~~--------~~~g~el~--gkTvGIiG~G~IG~~va~~l~afg--m~v~~~d~~~~~~-~~ 180 (324)
T COG0111 114 LARRIPDADASQRRGEWDRK--------AFRGTELA--GKTVGIIGLGRIGRAVAKRLKAFG--MKVIGYDPYSPRE-RA 180 (324)
T ss_pred HhcCchhhHHHHHcCCcccc--------cccccccc--CCEEEEECCCHHHHHHHHHHHhCC--CeEEEECCCCchh-hh
Confidence 34777888888899977761 23334455 789999999999999999999877 9999999933211 11
Q ss_pred HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700 169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 169 ~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t 240 (420)
... ......++++.++.||+|.+.+|. ..++.++. +....++++.++|++..|-..+.
T Consensus 181 ~~~--------------~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde 240 (324)
T COG0111 181 GVD--------------GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDE 240 (324)
T ss_pred ccc--------------cceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecH
Confidence 111 123345799999999999999994 55777773 34567889999999999976553
No 108
>PLN03139 formate dehydrogenase; Provisional
Probab=98.81 E-value=1.9e-08 Score=102.71 Aligned_cols=125 Identities=12% Similarity=0.129 Sum_probs=90.0
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
++-.+.++.++.+.|... .| .....++. .++|+|||+|.||..+|++|..-| .+|.+|+|.....+...+
T Consensus 171 R~~~~~~~~~~~g~W~~~-~~-----~~~~~~L~--gktVGIVG~G~IG~~vA~~L~afG--~~V~~~d~~~~~~~~~~~ 240 (386)
T PLN03139 171 RNFLPGYHQVVSGEWNVA-GI-----AYRAYDLE--GKTVGTVGAGRIGRLLLQRLKPFN--CNLLYHDRLKMDPELEKE 240 (386)
T ss_pred cCcHHHHHHHHhCCCccc-cc-----cCCCcCCC--CCEEEEEeecHHHHHHHHHHHHCC--CEEEEECCCCcchhhHhh
Confidence 555677788888877631 11 11122333 789999999999999999999877 899999987432222222
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN 239 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~ 239 (420)
. ++....+++++++.||+|++++|. ..++.++ +++...++++.++|++..|-..+
T Consensus 241 ~--------------g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVD 297 (386)
T PLN03139 241 T--------------GAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMD 297 (386)
T ss_pred c--------------CceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhh
Confidence 1 123345889999999999999994 5577777 45677889999999999986554
No 109
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.78 E-value=3.5e-08 Score=88.34 Aligned_cols=93 Identities=19% Similarity=0.320 Sum_probs=69.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.++|+|||.|..|.+.|..|.++| .+|++-.|... ..++.++.|. .+ .+.+|+++.+|+|++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG--~~V~Vglr~~s~s~~~A~~~Gf--------------~v-~~~~eAv~~aDvV~~ 66 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSG--VNVIVGLREGSASWEKAKADGF--------------EV-MSVAEAVKKADVVML 66 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT---------------EC-CEHHHHHHC-SEEEE
T ss_pred CCEEEEECCChHHHHHHHHHHhCC--CCEEEEecCCCcCHHHHHHCCC--------------ee-ccHHHHHhhCCEEEE
Confidence 579999999999999999999999 89999888765 5566666653 22 267899999999999
Q ss_pred ccChhhHHHHH-HHhhhcCCCCCeEEEeccCCC
Q 014700 206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 206 aVp~~~l~~vl-~~i~~~l~~~~iVVs~snGi~ 237 (420)
.+|+....+++ ++|.+++++++.++. +-|+.
T Consensus 67 L~PD~~q~~vy~~~I~p~l~~G~~L~f-ahGfn 98 (165)
T PF07991_consen 67 LLPDEVQPEVYEEEIAPNLKPGATLVF-AHGFN 98 (165)
T ss_dssp -S-HHHHHHHHHHHHHHHS-TT-EEEE-SSSHH
T ss_pred eCChHHHHHHHHHHHHhhCCCCCEEEe-CCcch
Confidence 99999999998 789999999998764 44653
No 110
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.72 E-value=1.6e-07 Score=93.66 Aligned_cols=188 Identities=16% Similarity=0.174 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHH-------HHH----HHHh---cCCCCCCCCC---CCCCceEEeCC--HHHhcc
Q 014700 138 FGTAMAAHVANKKSQLKVYMLMRDPAV-------CQS----INEK---HCNCRYFPEQ---KLPENVIATTD--AKTALL 198 (420)
Q Consensus 138 mG~alA~~La~aG~~~~V~l~~r~~~~-------~~~----i~~~---g~~~~~l~~~---~l~~~i~a~td--~~eal~ 198 (420)
||..||..++.+| ++|+++|++++. ++. +.+. -.....+... ....+++.+++ +.++++
T Consensus 1 MG~giA~~~a~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~ 78 (314)
T PRK08269 1 MGQGIALAFAFAG--HDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA 78 (314)
T ss_pred CcHHHHHHHHhCC--CeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence 7999999999998 999999998842 111 1110 0000001110 11245666654 667889
Q ss_pred CCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHHHHhhc
Q 014700 199 GADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFALELMNK 274 (420)
Q Consensus 199 ~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~ev~~g 274 (420)
+||+||.|||.. ..+.++.++.+.+++++++.+.+.++... .+.+.+..+ ..+.. +..|.+..
T Consensus 79 ~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~-------~la~~~~~p-~r~~g~Hf~~Pp~~~----- 145 (314)
T PRK08269 79 DADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVT-------DLQRHVAHP-ERFLNAHWLNPAYLM----- 145 (314)
T ss_pred cCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHH-------HHHhhcCCc-ccEEEEecCCccccC-----
Confidence 999999999953 35667788888899999997666655532 233333221 01111 11122111
Q ss_pred CCeEEEEe--cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Q 014700 275 LPTAMVVA--SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW 352 (420)
Q Consensus 275 ~~t~i~ia--~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~ 352 (420)
+..=++. ..+++.++++.++++..|..+++..|.-|- ....+....++|+..
T Consensus 146 -~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~Gf-------------------------i~nri~~~~l~EAl~ 199 (314)
T PRK08269 146 -PLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGY-------------------------IVPRIQALAMNEAAR 199 (314)
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCc-------------------------chHHHHHHHHHHHHH
Confidence 1111112 357889999999999999888877775431 122345567788888
Q ss_pred HHHHcCCChhhhhh
Q 014700 353 LATKMGAKPATITG 366 (420)
Q Consensus 353 lA~a~Gi~~~t~~~ 366 (420)
+++..|++++.+..
T Consensus 200 l~e~g~~~~e~iD~ 213 (314)
T PRK08269 200 MVEEGVASAEDIDK 213 (314)
T ss_pred HHHhCCCCHHHHHH
Confidence 88887777776654
No 111
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.71 E-value=9e-08 Score=94.87 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|+|||.|+||.++|.+|...| ++|++|+|.....+.....| +.. .+++++++.||+|+++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G--~~ViV~~r~~~s~~~A~~~G--------------~~v-~sl~Eaak~ADVV~ll 78 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSG--VEVVVGVRPGKSFEVAKADG--------------FEV-MSVSEAVRTAQVVQML 78 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCc--CEEEEEECcchhhHHHHHcC--------------CEE-CCHHHHHhcCCEEEEe
Confidence 579999999999999999999998 99999987643333333322 222 2788999999999999
Q ss_pred cChhhHHHHH-HHhhhcCCCCCeEEEeccCCCc
Q 014700 207 MPVQFSSSFL-EGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 207 Vp~~~l~~vl-~~i~~~l~~~~iVVs~snGi~~ 238 (420)
+|....++++ +++.+.++++++++ .+-|+..
T Consensus 79 LPd~~t~~V~~~eil~~MK~GaiL~-f~hgfni 110 (335)
T PRK13403 79 LPDEQQAHVYKAEVEENLREGQMLL-FSHGFNI 110 (335)
T ss_pred CCChHHHHHHHHHHHhcCCCCCEEE-ECCCcce
Confidence 9987677887 46888899988765 4557653
No 112
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.71 E-value=2.8e-07 Score=85.93 Aligned_cols=167 Identities=11% Similarity=0.221 Sum_probs=103.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|||+|||+ |.||..++..|.++| +.|+ +.+||+||+|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g--~~v~----------------------------------------~~~~DlVila 38 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG--LGVY----------------------------------------IKKADHAFLS 38 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC--CEEE----------------------------------------ECCCCEEEEe
Confidence 69999998 999999999999998 8875 1368999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH-HhhcCCeEEEEe-cC
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-LMNKLPTAMVVA-SK 284 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e-v~~g~~t~i~ia-~~ 284 (420)
+|...+.++++++.+ +|+.+.. +-. .+.+...+.+|. +| +.||..+.. ++ . ..++.. ..
T Consensus 39 vPv~~~~~~i~~~~~------~v~Dv~S-vK~----~i~~~~~~~vg~--HP---MfGp~~a~~~lf--~-~~iv~~~~~ 99 (197)
T PRK06444 39 VPIDAALNYIESYDN------NFVEISS-VKW----PFKKYSGKIVSI--HP---LFGPMSYNDGVH--R-TVIFINDIS 99 (197)
T ss_pred CCHHHHHHHHHHhCC------eEEeccc-cCH----HHHHhcCCEEec--CC---CCCCCcCccccc--c-eEEEECCCC
Confidence 999999998887652 4555431 110 111111122222 33 346766542 22 1 222222 33
Q ss_pred CHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH---HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHc-CCC
Q 014700 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM-GAK 360 (420)
Q Consensus 285 d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a---lkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~-Gi~ 360 (420)
+++..+.++++++ |.++...+--.+++..+. |.|+++.+..- .+ ..+...+++.+.++|+.. +.+
T Consensus 100 ~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~ishLpH~ia~al~~---~~------~~~~t~~fr~l~ria~~~~~~~ 168 (197)
T PRK06444 100 RDNYLNEINEMFR--GYHFVEMTADEHDLLMSEIMVKPYIISMILKD---IK------SDIKTGSFDKLLEVSEIKEKEN 168 (197)
T ss_pred CHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHHHHHHHHHHHHcc---CC------CCCCCccHHHHHHHHHHhccCC
Confidence 5566788999998 677776655455554443 44444332221 11 234567899999999887 667
Q ss_pred hhhhhh
Q 014700 361 PATITG 366 (420)
Q Consensus 361 ~~t~~~ 366 (420)
++.+.+
T Consensus 169 p~lw~d 174 (197)
T PRK06444 169 WEVFND 174 (197)
T ss_pred HHHHHH
Confidence 765544
No 113
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.69 E-value=5e-08 Score=103.83 Aligned_cols=123 Identities=14% Similarity=0.191 Sum_probs=89.3
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
|+-...++.++.+.|++. ...+.++. .++|+|||.|.||..+|.+|..-| ++|.+|++.... +...+
T Consensus 112 R~~~~~~~~~~~g~W~~~--------~~~g~~l~--gktvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~ 178 (525)
T TIGR01327 112 RNIPQADASLKEGEWDRK--------AFMGTELY--GKTLGVIGLGRIGSIVAKRAKAFG--MKVLAYDPYISP-ERAEQ 178 (525)
T ss_pred cCHHHHHHHHHcCCcccc--------ccCccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence 666677888888877642 11223344 689999999999999999998877 899999985221 11122
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
. ++...++++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus 179 ~--------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde 236 (525)
T TIGR01327 179 L--------------GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDE 236 (525)
T ss_pred c--------------CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCH
Confidence 1 123345789999999999999995 4577776 345567899999999999866553
No 114
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.67 E-value=6.2e-08 Score=103.14 Aligned_cols=122 Identities=14% Similarity=0.192 Sum_probs=89.4
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
|+-...++.++.+.|++. ...+.++. .++|+|||+|.||..+|.+|..-| ++|.+|+|.... +....
T Consensus 114 R~~~~~~~~~~~g~W~~~--------~~~g~~l~--gktvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~ 180 (526)
T PRK13581 114 RNIPQAHASLKAGKWERK--------KFMGVELY--GKTLGIIGLGRIGSEVAKRAKAFG--MKVIAYDPYISP-ERAAQ 180 (526)
T ss_pred cCHHHHHHHHHcCCCCcc--------CccccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence 566667777888877642 11222344 689999999999999999999877 999999985421 11122
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
.+ +... +++++++.||+|++++|. ..++.++ .+....++++.++|+++.|-..++
T Consensus 181 ~g--------------~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde 237 (526)
T PRK13581 181 LG--------------VELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDE 237 (526)
T ss_pred cC--------------CEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCH
Confidence 11 2333 788999999999999995 4577777 456777899999999999866553
No 115
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.62 E-value=1.5e-07 Score=93.86 Aligned_cols=96 Identities=11% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|+|||.|.||..+|..|..-| ++|.+|++..+... +.. ......++++++++||+|+++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG--~~V~~~~~~~~~~~-----~~~-----------~~~~~~~l~e~l~~aDvvv~~ 197 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWG--FPLRCWSRSRKSWP-----GVQ-----------SFAGREELSAFLSQTRVLINL 197 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCCCC-----Cce-----------eecccccHHHHHhcCCEEEEC
Confidence 579999999999999999999877 99999998653211 100 001123788999999999999
Q ss_pred cCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700 207 MPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 207 Vp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t 240 (420)
+|. ..++.++. +....++++.++|++..|-..++
T Consensus 198 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 198 LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred CCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCH
Confidence 994 55777774 46677899999999999866553
No 116
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.61 E-value=1.1e-07 Score=94.27 Aligned_cols=117 Identities=11% Similarity=0.220 Sum_probs=84.9
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
++-...++.++.+.|... ...++. .++|+|||.|.||..+|..|..-| ++|.+|+|+...
T Consensus 98 R~i~~~~~~~~~g~w~~~----------~~~~L~--gktvgIiG~G~IG~~vA~~l~afG--~~V~~~~r~~~~------ 157 (303)
T PRK06436 98 KNICENNYNMKNGNFKQS----------PTKLLY--NKSLGILGYGGIGRRVALLAKAFG--MNIYAYTRSYVN------ 157 (303)
T ss_pred cChHHHHHHHHcCCCCCC----------CCCCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCcc------
Confidence 556677788888866531 112333 789999999999999999887666 999999986321
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
.+.. ....++++++++||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus 158 ~~~~-------------~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 158 DGIS-------------SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred cCcc-------------cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 1110 1124788999999999999995 4566666 345666889999999999866553
No 117
>PLN02306 hydroxypyruvate reductase
Probab=98.60 E-value=2.1e-07 Score=95.30 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=90.8
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHH-
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSI- 168 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i- 168 (420)
++-...++.++.+.|.+ |.+. ...+.++. .++|||||.|.+|..+|++|.+. ++.+|..|++.... .+..
T Consensus 136 R~i~~~~~~~~~g~w~~---~~~~--~~~g~~L~--gktvGIiG~G~IG~~vA~~l~~~-fGm~V~~~d~~~~~~~~~~~ 207 (386)
T PLN02306 136 RRIVEADEFMRAGLYEG---WLPH--LFVGNLLK--GQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQSTRLEKFV 207 (386)
T ss_pred hChHHHHHHHHcCCCcc---cccc--ccCCcCCC--CCEEEEECCCHHHHHHHHHHHhc-CCCEEEEECCCCchhhhhhh
Confidence 55666778888888864 6531 11233444 78999999999999999998633 34899999987532 1111
Q ss_pred HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700 169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 169 ~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t 240 (420)
...+....-.... +..+....+++++++.||+|++++|. ..++.++. +....++++.++|++..|-..++
T Consensus 208 ~~~~~~l~~~~~~--~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe 279 (386)
T PLN02306 208 TAYGQFLKANGEQ--PVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDE 279 (386)
T ss_pred hhhcccccccccc--cccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCH
Confidence 1111000000000 00112235899999999999999994 55777773 45677899999999999866553
No 118
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.60 E-value=1.5e-07 Score=94.28 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=88.4
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
++-...++.++.|.|... ++. ...+.++. .++|||||.|.+|..+|+.|. .+++.+|..|+|.... +....
T Consensus 116 R~i~~~~~~~~~g~w~~~--~~~---~~~g~~L~--gktvGIiG~G~IG~~va~~l~-~~fgm~V~~~~~~~~~-~~~~~ 186 (323)
T PRK15409 116 RRVVEVAERVKAGEWTAS--IGP---DWFGTDVH--HKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHK-EAEER 186 (323)
T ss_pred cCHHHHHHHHHcCCCccc--Ccc---ccccCCCC--CCEEEEEcccHHHHHHHHHHH-hcCCCEEEEECCCCch-hhHHh
Confidence 566777888899988652 221 11233444 789999999999999999987 2234899999876421 11111
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
.+ +.. .+++++++.||+|++++|. ..++.++ ++....++++.++|++..|-..++
T Consensus 187 ~~--------------~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde 243 (323)
T PRK15409 187 FN--------------ARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDE 243 (323)
T ss_pred cC--------------cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCH
Confidence 11 122 3789999999999999994 5577777 345677899999999999866553
No 119
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.59 E-value=1.5e-07 Score=97.15 Aligned_cols=120 Identities=15% Similarity=0.218 Sum_probs=88.2
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
|+-...++.++.|.|.+. . ..+.++. .++|||||.|++|..+|..+..-| .+|..|++.+.. ..
T Consensus 125 R~~~~~~~~~~~g~w~~~------~--~~~~~L~--gktvGIiG~G~IG~~vA~~~~~fG--m~V~~~d~~~~~----~~ 188 (409)
T PRK11790 125 RGIPEKNAKAHRGGWNKS------A--AGSFEVR--GKTLGIVGYGHIGTQLSVLAESLG--MRVYFYDIEDKL----PL 188 (409)
T ss_pred cChHHHHHHHHcCccccc------c--cCcccCC--CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCccc----cc
Confidence 556667777888877541 1 1122334 789999999999999999998766 999999986421 00
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
+ .+....+++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus 189 -~-------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde 246 (409)
T PRK11790 189 -G-------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246 (409)
T ss_pred -C-------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCH
Confidence 0 123344799999999999999995 5577777 345677899999999999866553
No 120
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.56 E-value=1.4e-06 Score=83.07 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=110.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHH-HHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQS-INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~-i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
|+|+|||+|.|..+++..+..+|. ..++..+..+...... +...| ++.+.+..+.++.+|+++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g--------------~~~~~~n~~~~~~s~v~~ 66 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALG--------------VKTVFTNLEVLQASDVVF 66 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCC--------------ceeeechHHHHhhcccee
Confidence 689999999999999999999884 2345555543322222 33332 233333367788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS- 283 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~- 283 (420)
++||.+.+.+++.++...+..+++|+++.-|...++ +.+.++.. .-.+...|+.+..+..+.. .+..+.
T Consensus 67 ~svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~-------l~~~l~~~--~rviRvmpNtp~~v~eg~s-v~~~g~~ 136 (267)
T KOG3124|consen 67 LSVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSS-------LESKLSPP--TRVIRVMPNTPSVVGEGAS-VYAIGCH 136 (267)
T ss_pred EeecchhHHHHhhcCccccccceEEEEEeecccHHH-------HHHhcCCC--CceEEecCCChhhhhcCcE-EEeeCCC
Confidence 999999999999999887778899999998887643 33344421 2246677888776665542 222332
Q ss_pred CCHHHHHHHHHHHhcCCceEEEcCChh
Q 014700 284 KDRKLANAVQQLLASKHLRISTSSDVT 310 (420)
Q Consensus 284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~ 310 (420)
...++.+.++++|+..|+...+.++.+
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~evpE~~i 163 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCEEVPEKCI 163 (267)
T ss_pred cchhhHHHHHHHHHhcCcceeCcHHhh
Confidence 245667899999999999888776543
No 121
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.55 E-value=1.1e-07 Score=94.88 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=87.2
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
++-...++.++.+.|....-|.. ......++. .++|||||.|.+|..+|..+..-| .+|..|+|..... .
T Consensus 113 R~~~~~~~~~~~g~w~~~~~~~~--~~~~~~~L~--gktvGIiG~G~IG~~vA~~~~~fg--m~V~~~d~~~~~~----~ 182 (311)
T PRK08410 113 GRINYYDRYVKSGEYSESPIFTH--ISRPLGEIK--GKKWGIIGLGTIGKRVAKIAQAFG--AKVVYYSTSGKNK----N 182 (311)
T ss_pred hCHHHHHHHHHcCCCCcCCCccc--cCccccccC--CCEEEEECCCHHHHHHHHHHhhcC--CEEEEECCCcccc----c
Confidence 56667788888887764211110 001112334 789999999999999999997655 8999999853210 0
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
.+ +. ..+++++++.||+|++++|. ...+.++ ++....++++.++|++..|-..++
T Consensus 183 ~~--------------~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe 239 (311)
T PRK08410 183 EE--------------YE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNE 239 (311)
T ss_pred cC--------------ce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCH
Confidence 01 11 23789999999999999994 4566666 345667899999999999866553
No 122
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=4.5e-07 Score=89.61 Aligned_cols=258 Identities=15% Similarity=0.178 Sum_probs=154.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh---ccCCcEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYC 203 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea---l~~aDiV 203 (420)
.+.|+.||++.||..++...+..| +.|.+|+|+..+++++.++..+-. .+.-..++++. ++....|
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~G--f~v~~yNRT~skvD~flaneak~~---------~i~ga~S~ed~v~klk~PR~i 74 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKG--FTVCAYNRTTSKVDEFLANEAKGT---------KIIGAYSLEDFVSKLKKPRVI 74 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccC--ceEEEeccchHhHHHHHHHhhcCC---------cccCCCCHHHHHHhcCCCcEE
Confidence 368999999999999999999999 999999999999988766532211 12223466664 4678899
Q ss_pred EEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700 204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA 282 (420)
Q Consensus 204 IlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia 282 (420)
++-|+. ..+..+++++.+++.++.+||.--|.--.+|.++..+ +.+. |. ..+-+|-+-.+|-++..|. .+.
T Consensus 75 illvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e-l~k~-Gi----lfvG~GVSGGEEGAR~GPS--lMp 146 (487)
T KOG2653|consen 75 ILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE-LAKK-GI----LFVGSGVSGGEEGARYGPS--LMP 146 (487)
T ss_pred EEEeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH-HHhc-Cc----EEEecCccCcccccccCCc--cCC
Confidence 999986 5688999999999999999998877555555443322 2221 32 1222344434444444443 245
Q ss_pred cCCHHHHHHHHHHHhcCCceEEEc---CChhHHHHHH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH-c
Q 014700 283 SKDRKLANAVQQLLASKHLRISTS---SDVTGVEIAG-ALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK-M 357 (420)
Q Consensus 283 ~~d~e~~~~l~~ll~~~g~~v~~s---~Di~g~e~~~-alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a-~ 357 (420)
+++.+....++.+|+....++... -+++|..-++ .+| + .-.+..+|+ .+.+.|+..+.+. .
T Consensus 147 Gg~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVK-M------VHNGIEYGD-------MqLI~EaY~vlk~~~ 212 (487)
T KOG2653|consen 147 GGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVK-M------VHNGIEYGD-------MQLICEAYDVLKSVL 212 (487)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchh-h------hccCcccch-------HHHHHHHHHHHHHhc
Confidence 667788888888887542222111 1122211000 011 0 112333443 4567888888877 6
Q ss_pred CCChhhhhhcc---ccchhhhhhcccCCCCccccccccCCC-ChHHHHHHcCCcccccchhhhhhc
Q 014700 358 GAKPATITGLS---GTGDIMLTCFVNLSRNRTVGVRLGSGE-KLDDILSSMNQVLVNPSMQPLLGK 419 (420)
Q Consensus 358 Gi~~~t~~~l~---g~gdl~~t~~~~~sRn~~~G~~l~~g~-~~~~~~~~~~~~~eG~~t~~~~~~ 419 (420)
|..-+.+-++- .-|.+- +..-...|| -+.+.=.+|+ .+++++++.+|-=-|.-|+-...|
T Consensus 213 gls~~eia~vF~~WN~gele-SfLieIT~d-Ilk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale 276 (487)
T KOG2653|consen 213 GLSNDEIAEVFDDWNKGELE-SFLIEITAD-ILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALE 276 (487)
T ss_pred CCcHHHHHHHHHhhcccchh-HHHHHHhHH-HhheeccCCChHHHHHHhhhcCCCccHHHHHHHHH
Confidence 66655444321 112110 000111222 3555666776 578888888887777776655443
No 123
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.52 E-value=1.2e-06 Score=86.99 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=75.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
||||+|||+|.||..+|..|+..|.. +|.++|++++..+.....-.... ........++.++|.+ ++++||+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~--~~~~~~~~i~~~~d~~-~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAA--PVEGFDTKITGTNDYE-DIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhh--hhcCCCcEEEeCCCHH-HHCCCCEEEEC
Confidence 68999999999999999999998733 99999998765433221100000 0001123455566775 47999999998
Q ss_pred cC--h--------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700 207 MP--V--------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (420)
Q Consensus 207 Vp--~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg 253 (420)
+. . ..++++++++.++. ++.++|..+|..+ .+...+.+..+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d-----~~~~~~~~~s~ 134 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVD-----AMTYVALKESG 134 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHHHHHHhC
Confidence 63 2 23667777777766 4566777777543 33444544433
No 124
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.52 E-value=4.1e-07 Score=94.44 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=59.2
Q ss_pred CeEEEEcccHHHHHHHH--HHH----hcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700 128 NKVVVLGGGSFGTAMAA--HVA----NKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (420)
Q Consensus 128 mkI~IIGaGamG~alA~--~La----~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD 201 (420)
+||+|||+|.||.+++. .++ .+| ++|.+||++++.++.+.... .++++....+.++..++|+++++++||
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g--~eV~L~Did~e~l~~~~~~~--~~~~~~~~~~~~I~~ttD~~eal~~AD 76 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSG--STIALMDIDEERLETVEILA--KKIVEELGAPLKIEATTDRREALDGAD 76 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCC--CEEEEECCCHHHHHHHHHHH--HHHHHhcCCCeEEEEeCCHHHHhcCCC
Confidence 58999999999999776 343 334 79999999998877665432 112222334457788999999999999
Q ss_pred EEEEccChh
Q 014700 202 YCLHAMPVQ 210 (420)
Q Consensus 202 iVIlaVp~~ 210 (420)
+||.+++..
T Consensus 77 ~Vi~ai~~~ 85 (423)
T cd05297 77 FVINTIQVG 85 (423)
T ss_pred EEEEeeEec
Confidence 999999853
No 125
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.51 E-value=5.3e-07 Score=89.83 Aligned_cols=135 Identities=14% Similarity=0.207 Sum_probs=95.7
Q ss_pred ccccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700 89 IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (420)
Q Consensus 89 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i 168 (420)
.-|+-+.++|.++.|.|....-|. .+...+ .++|+|+|+|.+|..+|.+|..-| ..+....|++...+..
T Consensus 132 ~~R~~~~g~~~~~~g~w~~~~~~~------~g~~~~--gK~vgilG~G~IG~~ia~rL~~Fg--~~i~y~~r~~~~~~~~ 201 (336)
T KOG0069|consen 132 LLRRFSEGNEMVRNGGWGWAGGWP------LGYDLE--GKTVGILGLGRIGKAIAKRLKPFG--CVILYHSRTQLPPEEA 201 (336)
T ss_pred HHhhhhhhhhhhhcCCccccCCcc------cccccc--CCEEEEecCcHHHHHHHHhhhhcc--ceeeeecccCCchhhH
Confidence 348888999999999882222222 223334 689999999999999999999855 6677777776544444
Q ss_pred HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 014700 169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQ 246 (420)
Q Consensus 169 ~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t~~~~se 246 (420)
.+.+. . ..|.++.+..+|+|++|.|. ..++.+++ ++..+++++.+||++..|-..+. +.+.+
T Consensus 202 ~~~~~--------------~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide-~~l~e 265 (336)
T KOG0069|consen 202 YEYYA--------------E-FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDE-EALVE 265 (336)
T ss_pred HHhcc--------------c-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccH-HHHHH
Confidence 43221 0 12677888999999999995 56888885 46778899999999999866542 23344
Q ss_pred HHH
Q 014700 247 IIP 249 (420)
Q Consensus 247 ~l~ 249 (420)
.+.
T Consensus 266 aL~ 268 (336)
T KOG0069|consen 266 ALK 268 (336)
T ss_pred HHh
Confidence 443
No 126
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.51 E-value=6.9e-06 Score=78.21 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=101.5
Q ss_pred CCeEEEEcccH--------------------HHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHHhcCCCCCCCCC
Q 014700 127 TNKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQ 181 (420)
Q Consensus 127 ~mkI~IIGaGa--------------------mG~alA~~La~aG~~~~V~l~~r~~~-----~~~~i~~~g~~~~~l~~~ 181 (420)
+|||+|.|+|+ -|..||..++++| |+|.+.+.+.+ +.+++...
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG--HDVVLaePn~d~~dd~~w~~vedA---------- 68 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG--HDVVLAEPNRDIMDDEHWKRVEDA---------- 68 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcC--CcEEeecCCccccCHHHHHHHHhc----------
Confidence 47999999997 3788999999999 99999987643 34444443
Q ss_pred CCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh-------C
Q 014700 182 KLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL-------R 253 (420)
Q Consensus 182 ~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~l-------g 253 (420)
++.+++|-.++++++++.++.+|-- .+-.+.++|.++++++.+|.+... .++- .+-..+...+ |
T Consensus 69 ----GV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT-~sp~---vLy~~LE~~Lr~kR~dVG 140 (340)
T COG4007 69 ----GVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCT-VSPV---VLYYSLEGELRTKREDVG 140 (340)
T ss_pred ----CcEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEeccccc-Cchh---HHHHHhhhhhcCchhhcC
Confidence 4577777778899999999999964 788899999999999988765432 3321 1112222222 2
Q ss_pred CC-CCCeEEEECcccHHHHhhcCCeE-EEEecCCHHHHHHHHHHHhcCCceEEEcC
Q 014700 254 NP-RQPFIALSGPSFALELMNKLPTA-MVVASKDRKLANAVQQLLASKHLRISTSS 307 (420)
Q Consensus 254 ~~-~~~~~vl~GP~~a~ev~~g~~t~-i~ia~~d~e~~~~l~~ll~~~g~~v~~s~ 307 (420)
.. .++.++=+.|.+..-+..+..+. ..+ ..++.++++.++.++.|..+|...
T Consensus 141 vssmHPAgvPGtp~h~~yviagr~t~g~el--ATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 141 VSSMHPAGVPGTPQHGHYVIAGRSTEGKEL--ATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccccCCCCCCCCCCCceEEEeccCCCceee--ccHHHHHHHHHHHHhcCCceEecC
Confidence 10 12222212222211111111111 111 246788999999999999988753
No 127
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.51 E-value=1.3e-06 Score=86.98 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=75.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.|||+|||+|.||+.+|..|+..|. .+|.++|+.++..+.....-.... +.......++.++|.++ +++||+||++
T Consensus 1 ~~KV~VIGaG~vG~~iA~~la~~g~-~~VvlvDi~~~l~~g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~~~aDiVIit 76 (305)
T TIGR01763 1 RKKISVIGAGFVGATTAFRLAEKEL-ADLVLLDVVEGIPQGKALDMYEAS--PVGGFDTKVTGTNNYAD-TANSDIVVIT 76 (305)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCCChhHHHHHhhhhhh--hccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence 3799999999999999999999873 289999997654321110000000 00112345777788877 7899999999
Q ss_pred cCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH
Q 014700 207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA 251 (420)
Q Consensus 207 Vp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~ 251 (420)
+.. ..++++++++.++. ++.+||..+|..+ .+...+.+.
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~d-----i~t~~~~~~ 131 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLD-----AMTYVAWQK 131 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHHHHHH
Confidence 872 23556667777764 5678888888543 344445554
No 128
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.50 E-value=1.2e-06 Score=85.49 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=68.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~-V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
||||+|||+|.||..++..|.+.+.+++ +.+++|++++.+.+.+.. +....+++++.+.++|+|++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-------------~~~~~~~~~ell~~~DvVvi 67 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-------------GAKACLSIDELVEDVDLVVE 67 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-------------CCeeECCHHHHhcCCCEEEE
Confidence 4799999999999999999987531245 457899988877765521 12455688887789999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG 235 (420)
|+|...+.+++.++.. .+..++.++.|
T Consensus 68 ~a~~~~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 68 CASVNAVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred cCChHHHHHHHHHHHH---cCCCEEEEchH
Confidence 9999888887776654 34444444443
No 129
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.50 E-value=2.3e-07 Score=92.63 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=86.0
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
++-...+|.++.+.|.+...|.. ......++. .++|||||.|.+|..+|+.|..-| .+|..|++.... ..
T Consensus 115 R~~~~~~~~~~~~~W~~~~~~~~--~~~~~~~l~--gktvgIiG~G~IG~~va~~l~~fg--~~V~~~~~~~~~--~~-- 184 (314)
T PRK06932 115 HSLMGWYRDQLSDRWATCKQFCY--FDYPITDVR--GSTLGVFGKGCLGTEVGRLAQALG--MKVLYAEHKGAS--VC-- 184 (314)
T ss_pred hChHHHHHHHHcCCCCcCccccc--cCCcccccC--CCEEEEECCCHHHHHHHHHHhcCC--CEEEEECCCccc--cc--
Confidence 55666778888887865211211 011112333 789999999999999999997655 899999875321 00
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
. . ...+++++++.||+|++++|. ...+.++ ++....++++.++|++..|-..++
T Consensus 185 -~--~-------------~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde 240 (314)
T PRK06932 185 -R--E-------------GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDE 240 (314)
T ss_pred -c--c-------------ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCH
Confidence 0 0 013789999999999999994 5577766 345667899999999999866553
No 130
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.49 E-value=1.7e-06 Score=85.26 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=105.6
Q ss_pred hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcE
Q 014700 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADY 202 (420)
Q Consensus 124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDi 202 (420)
++...+|+|||.|+||..+|..|.++| |.|...+|.+ . ..+.+.-.. ...+++.+. -+..|+
T Consensus 49 ~k~tl~IaIIGfGnmGqflAetli~aG--h~li~hsRsd-y-ssaa~~yg~-------------~~ft~lhdlcerhpDv 111 (480)
T KOG2380|consen 49 WKATLVIAIIGFGNMGQFLAETLIDAG--HGLICHSRSD-Y-SSAAEKYGS-------------AKFTLLHDLCERHPDV 111 (480)
T ss_pred cccceEEEEEecCcHHHHHHHHHHhcC--ceeEecCcch-h-HHHHHHhcc-------------cccccHHHHHhcCCCE
Confidence 344679999999999999999999999 9999999987 3 344432111 111233333 357999
Q ss_pred EEEccChhhHHHHHHHhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHHhhcCCeEE
Q 014700 203 CLHAMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTAM 279 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~-l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev~~g~~t~i 279 (420)
|++||....++.++....+. ++.+++++....--.+ ..+.+.+.++... ..+..+.||....+-.+|.|-.+
T Consensus 112 vLlctsilsiekilatypfqrlrrgtlfvdvlSvKef-----ek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVy 186 (480)
T KOG2380|consen 112 VLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEF-----EKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVY 186 (480)
T ss_pred EEEEehhhhHHHHHHhcCchhhccceeEeeeeecchh-----HHHHHHHhCccccceEeecCCcCCCcCCCccccCceEE
Confidence 99999999999999877654 7788988776531122 2344556666531 11224578875554445555322
Q ss_pred EE-----ecCCHHHHHHHHHHHhcCCceEEE
Q 014700 280 VV-----ASKDRKLANAVQQLLASKHLRIST 305 (420)
Q Consensus 280 ~i-----a~~d~e~~~~l~~ll~~~g~~v~~ 305 (420)
.- +...++.++.+-++|.+.|.+.+.
T Consensus 187 dkvRig~~~~r~ercE~fleIf~cegckmVe 217 (480)
T KOG2380|consen 187 DKVRIGYAASRPERCEFFLEIFACEGCKMVE 217 (480)
T ss_pred EEeeccccccchHHHHHHHHHHHhcCCeEEE
Confidence 11 122368899999999998887543
No 131
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.47 E-value=2.6e-07 Score=92.38 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=87.4
Q ss_pred cccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.++-...++.++.+.|.+...+.. ..+...++. .++|||||.|.+|..+|+.|..-| .+|..|+|....
T Consensus 115 ~R~~~~~~~~~~~g~W~~~~~~~~--~~~~~~~l~--gktvgIiG~G~IG~~vA~~l~~fg--m~V~~~~~~~~~----- 183 (317)
T PRK06487 115 ATRLPDYQQAVAAGRWQQSSQFCL--LDFPIVELE--GKTLGLLGHGELGGAVARLAEAFG--MRVLIGQLPGRP----- 183 (317)
T ss_pred HcCHHHHHHHHHcCCCccCccccc--ccCcccccC--CCEEEEECCCHHHHHHHHHHhhCC--CEEEEECCCCCc-----
Confidence 366677788888998865211110 011112333 789999999999999999998655 899999875310
Q ss_pred HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700 170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t 240 (420)
.. .. ..+++++++.||+|++++|. ..++.++. +....++++.++|++..|-..++
T Consensus 184 -~~--------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde 240 (317)
T PRK06487 184 -AR--------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDE 240 (317)
T ss_pred -cc--------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 00 00 12688999999999999994 55777773 45667899999999999866553
No 132
>PLN02928 oxidoreductase family protein
Probab=98.46 E-value=4.8e-07 Score=91.54 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=84.3
Q ss_pred ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
++-...++.++.+.|.. ..+.++. .++|+|||+|.||..+|..|..-| .+|++|+|....... ..
T Consensus 135 R~~~~~~~~~~~~~w~~----------~~~~~l~--gktvGIiG~G~IG~~vA~~l~afG--~~V~~~dr~~~~~~~-~~ 199 (347)
T PLN02928 135 RKQNEMQISLKARRLGE----------PIGDTLF--GKTVFILGYGAIGIELAKRLRPFG--VKLLATRRSWTSEPE-DG 199 (347)
T ss_pred hCHHHHHHHHHcCCccc----------ccccCCC--CCEEEEECCCHHHHHHHHHHhhCC--CEEEEECCCCChhhh-hh
Confidence 44455666666665532 1112333 689999999999999999999877 899999986321111 00
Q ss_pred hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
.+......... ........+++++++.||+|++++|. ...+.++ ++....++++.++|++..|-..++
T Consensus 200 ~~~~~~~~~~~--~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde 269 (347)
T PLN02928 200 LLIPNGDVDDL--VDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDY 269 (347)
T ss_pred hcccccccccc--ccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCH
Confidence 00000000000 00000124789999999999999994 4466666 345667899999999999866553
No 133
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.41 E-value=2.1e-06 Score=75.79 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=74.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|||+|||+ |.+|.++|..|...+...++.++|++++.++.....-.+..+ ..+....+..+..+++++||+||++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASA----PLPSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHH----GSTEEEEEEESSGGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhh----hcccccccccccccccccccEEEEe
Confidence 79999999 999999999999988667899999997654332211000000 0111233333445668999999998
Q ss_pred cCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700 207 MPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN 254 (420)
Q Consensus 207 Vp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~ 254 (420)
.-. . .++++.+.+..+- ++.+++.++|.++ .++.++.+..+.
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd-----~~t~~~~~~s~~ 134 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD-----VMTYVAQKYSGF 134 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH-----HHHHHHHHHHTS
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH-----HHHHHHHHhhCc
Confidence 632 1 2445556666665 6677877887543 456666665443
No 134
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.35 E-value=2.8e-06 Score=83.10 Aligned_cols=92 Identities=21% Similarity=0.222 Sum_probs=67.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc-CCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANK-KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~a-G~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.+||+|||+|.||..++..|.+. . +++|. +|+|++++.+.+.+.. . .....+++++.+.++|+|+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~-~~el~aV~dr~~~~a~~~a~~~-g-----------~~~~~~~~eell~~~D~Vv 72 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLP-GLTLSAVAVRDPQRHADFIWGL-R-----------RPPPVVPLDQLATHADIVV 72 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCC-CeEEEEEECCCHHHHHHHHHhc-C-----------CCcccCCHHHHhcCCCEEE
Confidence 47999999999999999999873 2 26776 7899988777665531 1 0123457888888999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+|+|...+.++...+.. .++.++..+.
T Consensus 73 i~tp~~~h~e~~~~aL~---aGk~Vi~~s~ 99 (271)
T PRK13302 73 EAAPASVLRAIVEPVLA---AGKKAIVLSV 99 (271)
T ss_pred ECCCcHHHHHHHHHHHH---cCCcEEEecc
Confidence 99999888877766543 4555555443
No 135
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.35 E-value=1.1e-06 Score=77.73 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=67.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|+|||+|.||.+++..|.+.| .++|++|+|+++..+.+.+.... .+ . .....+.+++++++|+||.|
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~-~~-----~---~~~~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE-LG-----I---AIAYLDLEELLAEADLIINT 88 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh-cc-----c---ceeecchhhccccCCEEEeC
Confidence 579999999999999999999885 37899999999887776554211 00 0 01234666767899999999
Q ss_pred cChhhH--HHHHHHhhhcCCCCCeEEEec
Q 014700 207 MPVQFS--SSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 207 Vp~~~l--~~vl~~i~~~l~~~~iVVs~s 233 (420)
+|.... +++.. ....++++++++.++
T Consensus 89 ~~~~~~~~~~~~~-~~~~~~~~~~v~D~~ 116 (155)
T cd01065 89 TPVGMKPGDELPL-PPSLLKPGGVVYDVV 116 (155)
T ss_pred cCCCCCCCCCCCC-CHHHcCCCCEEEEcC
Confidence 997653 22111 112356788888875
No 136
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.33 E-value=2.5e-06 Score=84.09 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|+|||+|.||.++|..|...| .+|++++|++++.+.+.+.+.. .....++++.++++|+||.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARITEMGLI------------PFPLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCCe------------eecHHHHHHHhccCCEEEEC
Confidence 579999999999999999999988 8999999998776665543321 01123566778899999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+|...+. ++....++++.++|++..
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 9976322 234455678889998864
No 137
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.33 E-value=1.3e-06 Score=89.13 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=71.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|||||.|+||..+|..|..-| .+|.+|++.... .+.. ....+++++++.||+|++.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G--~~V~~~dp~~~~------~~~~-------------~~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALG--IKTLLCDPPRAD------RGDE-------------GDFRSLDELVQEADILTFH 174 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCcccc------cccc-------------cccCCHHHHHhhCCEEEEe
Confidence 689999999999999999999877 999999864321 0100 0123789999999999999
Q ss_pred cChhh-----HHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 207 MPVQF-----SSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 207 Vp~~~-----l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
+|... ...++ ++....+++++++|+++.|-..++
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe 214 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDN 214 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCH
Confidence 99533 55555 455677889999999999866553
No 138
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.32 E-value=1.3e-06 Score=89.17 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|||||+|+||..+|..|..-| .+|.+||+..... + + . ....++++++++||+|+++
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G--~~V~~~Dp~~~~~----~-~-------------~-~~~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLG--WKVLVCDPPRQEA----E-G-------------D-GDFVSLERILEECDVISLH 174 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCccccc----c-c-------------C-ccccCHHHHHhhCCEEEEe
Confidence 579999999999999999999887 9999999753210 0 1 0 1123788989999999999
Q ss_pred cChh-----hHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700 207 MPVQ-----FSSSFL-EGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 207 Vp~~-----~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
+|.. ....++ ++....+++++++|+++.|-..++
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 9954 355666 345667899999999999866553
No 139
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.29 E-value=8.7e-06 Score=81.50 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=75.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH--HHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS--INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~--i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.+||+|||+|.||..+|..|+..|. .+|.++|++++.++. +...+.. .+ ......+..++|.+ ++++||+||
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~-~~---~~~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFS-TL---VGSNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhc-cc---cCCCeEEEeCCCHH-HhCCCCEEE
Confidence 5799999999999999999998875 589999998764332 2111110 00 11123455567877 689999999
Q ss_pred Ecc--Ch--------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700 205 HAM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (420)
Q Consensus 205 laV--p~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg 253 (420)
++. |. ..++++++.+.++. ++.++|..+|..+ .+...+.+..+
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~d-----i~t~~~~~~s~ 137 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLD-----CMVKVFQEKSG 137 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHH-----HHHHHHHHhhC
Confidence 998 32 23566777777764 5667777787443 33444555443
No 140
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.28 E-value=8.5e-06 Score=81.64 Aligned_cols=105 Identities=22% Similarity=0.321 Sum_probs=69.9
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~--~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
-+.+||+|||+|.||..+|..++..|. .+|.++|++++.++ .+...+.. .-...+..+..++|.+ ++++||+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~----~~~~~~~~I~~~~d~~-~l~~aDi 77 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSN----VIAGSNSKVIGTNNYE-DIAGSDV 77 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhh----hccCCCeEEEECCCHH-HhCCCCE
Confidence 345799999999999999999998884 48999999887532 22111110 0011123566667875 5899999
Q ss_pred EEEccCh---------------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 203 CLHAMPV---------------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 203 VIlaVp~---------------------~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
||++.-. ..+.++++++.++. ++.+++..+|..
T Consensus 78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 9996611 12556667777766 455777777744
No 141
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.24 E-value=6.7e-05 Score=73.32 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=75.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..+||+|||.|+=|.+=|..|.++| .+|++--|.... .+...+.|. .+ -+.+|+++.+|+|+
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSG--lnViiGlr~g~~s~~kA~~dGf--------------~V-~~v~ea~k~ADvim 79 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSG--LNVIIGLRKGSSSWKKAKEDGF--------------KV-YTVEEAAKRADVVM 79 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcC--CcEEEEecCCchhHHHHHhcCC--------------Ee-ecHHHHhhcCCEEE
Confidence 3579999999999999999999999 888877665544 444455443 22 26789999999999
Q ss_pred EccChhhHHHHHH-HhhhcCCCCCeEEEeccCCCc
Q 014700 205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 205 laVp~~~l~~vl~-~i~~~l~~~~iVVs~snGi~~ 238 (420)
+-+|+..-.++.+ +|.|.++++..+. .+-|+..
T Consensus 80 ~L~PDe~q~~vy~~~I~p~Lk~G~aL~-FaHGfNi 113 (338)
T COG0059 80 ILLPDEQQKEVYEKEIAPNLKEGAALG-FAHGFNI 113 (338)
T ss_pred EeCchhhHHHHHHHHhhhhhcCCceEE-eccccce
Confidence 9999999999997 8999999988654 4557653
No 142
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.23 E-value=1.5e-05 Score=67.41 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=69.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL 204 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiVI 204 (420)
+||+|||+|.+|......+.+...+.+|. +++++++..+.+.+.. ++...+|.++.+. +.|+|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-------------GIPVYTDLEELLADEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-------------TSEEESSHHHHHHHTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-------------cccchhHHHHHHHhhcCCEEE
Confidence 58999999999999998888873235665 7899998888775542 2346778888876 789999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
+++|.....+++..... .+..| .+-|.+.
T Consensus 68 I~tp~~~h~~~~~~~l~---~g~~v-~~EKP~~ 96 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALE---AGKHV-LVEKPLA 96 (120)
T ss_dssp EESSGGGHHHHHHHHHH---TTSEE-EEESSSS
T ss_pred EecCCcchHHHHHHHHH---cCCEE-EEEcCCc
Confidence 99999888777776655 34433 3456554
No 143
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.22 E-value=5.3e-06 Score=71.59 Aligned_cols=122 Identities=19% Similarity=0.246 Sum_probs=74.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
|||+|+|+ |.||..++..+.+.. ++++. .++|+++.. .|.....+.+.. +.++.+++++++++..+|++|-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~-~~~lv~~v~~~~~~~-----~g~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP-GFELVGAVDRKPSAK-----VGKDVGELAGIG-PLGVPVTDDLEELLEEADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST-TEEEEEEEETTTSTT-----TTSBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-CcEEEEEEecCCccc-----ccchhhhhhCcC-CcccccchhHHHhcccCCEEEE
Confidence 69999999 999999999999843 26755 566765210 011111111112 3456778899999989999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECccc
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF 267 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~ 267 (420)
++-...+.+.++....+ +..+|..+.|+..+.. +.+.+. .. ...++..|+|
T Consensus 74 fT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~----~~l~~~-a~---~~~vl~a~Nf 124 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKH---GVPLVIGTTGFSDEQI----DELEEL-AK---KIPVLIAPNF 124 (124)
T ss_dssp ES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHH----HHHHHH-TT---TSEEEE-SSS
T ss_pred cCChHHhHHHHHHHHhC---CCCEEEECCCCCHHHH----HHHHHH-hc---cCCEEEeCCC
Confidence 88767776766666554 6777878889875432 233332 22 2457777764
No 144
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.21 E-value=1.7e-05 Score=79.25 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.+||+|||+|.+|+++|..|+..+...++.++|++++.++-....-.+...+ ... ..+..+.|+++ +++||+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~--~~~-~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF--LKN-PKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc--CCC-CEEEECCCHHH-hCCCCEEEEC
Confidence 5799999999999999999998875568999998876443222110011111 011 25666678876 8999999996
Q ss_pred cCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 207 MPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 207 Vp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
.-. . .++++.+.+.++ .++.+++.++|..
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 431 1 144555666666 4677788788744
No 145
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.19 E-value=1.1e-05 Score=80.44 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=69.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
..++|+|||+|.||..++..|...| .++|++++|++++.+.+.+... . .+...++..+++.++|+||.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g------~-----~~~~~~~~~~~l~~aDvVi~ 244 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG------G-----NAVPLDELLELLNEADVVIS 244 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC------C-----eEEeHHHHHHHHhcCCEEEE
Confidence 3689999999999999999998865 3789999999988777765421 0 11112356677889999999
Q ss_pred ccChhhHHHHHHHhhhcC-CCCCeEEEecc
Q 014700 206 AMPVQFSSSFLEGISDYV-DPGLPFISLSK 234 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l-~~~~iVVs~sn 234 (420)
|++......+++.+.... .++.++|.++.
T Consensus 245 at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 245 ATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 999766655555443322 24678888874
No 146
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.17 E-value=1.3e-05 Score=77.88 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=75.6
Q ss_pred EEEEcc-cHHHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 130 VVVLGG-GSFGTAMAAHVANKK--SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 130 I~IIGa-GamG~alA~~La~aG--~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|+|||+ |.||..+|..|+..| ...+|.++|+++++++.....-... .... ...++..++|+.+++++||+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~--~~~~-~~~~i~~~~d~~~~~~~aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDA--VEPL-ADIKVSITDDPYEAFKDADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHh--hhhc-cCcEEEECCchHHHhCCCCEEEEC
Confidence 689999 999999999999876 4468999999886654433321010 0111 234677778878889999999995
Q ss_pred cCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH
Q 014700 207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA 251 (420)
Q Consensus 207 Vp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~ 251 (420)
.-. ..++++++++.++. ++.+++..+|..+ .+...+.+.
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d-----~~t~~~~~~ 132 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVD-----IITYLVWRY 132 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHHHHHH
Confidence 421 23566667776665 6777777777443 344555554
No 147
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.12 E-value=1.7e-05 Score=78.53 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=71.2
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh
Q 014700 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (420)
Q Consensus 130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~ 209 (420)
|+|||+|.||..+|..|+..|.. +|+++|++++..+...-.-... .........+..++|.+ ++++||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~--~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQA--APILGSDTKVTGTNDYE-DIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHh--hhhcCCCeEEEEcCCHH-HhCCCCEEEEecCC
Confidence 68999999999999999988732 9999999876432111100000 00011123456666765 48999999997731
Q ss_pred ----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700 210 ----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (420)
Q Consensus 210 ----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg 253 (420)
..++++++++.++. ++.++|..+|..+ .+...+.+..+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~d-----i~t~~~~~~s~ 130 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLD-----VMTYVAYKASG 130 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHHHHHHhC
Confidence 23566777777766 4556666777433 34445555443
No 148
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.11 E-value=2.1e-05 Score=77.89 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=68.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.+|++|||+|.+|..++..|...| .+|++++|+++..+...+.|... ....++.+.+.++|+||.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~~G~~~------------~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITEMGLSP------------FHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCee------------ecHHHHHHHhCCCCEEEEC
Confidence 579999999999999999999988 89999999987766655543211 1113566778899999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+|...+ -++....++++.+||++..
T Consensus 218 ~p~~~i---~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 218 IPALVL---TKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CChhhh---hHHHHHcCCCCcEEEEEcc
Confidence 996532 2344556778899988764
No 149
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.09 E-value=1.4e-05 Score=79.83 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=66.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
+.++|+|||+|.||..++..+.. .+ ..+|++|+|++++.+.+.+.-.. . ...+.+..++++++.+||+|+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~-~-------g~~~~~~~~~~~av~~aDIVi 194 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRA-Q-------GFDAEVVTDLEAAVRQADIIS 194 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHh-c-------CCceEEeCCHHHHHhcCCEEE
Confidence 35799999999999999986654 33 27999999999988887664110 0 012456678888899999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+++. +.++. ...+++++.|..+
T Consensus 195 ~aT~s~--~pvl~--~~~l~~g~~i~~i 218 (314)
T PRK06141 195 CATLST--EPLVR--GEWLKPGTHLDLV 218 (314)
T ss_pred EeeCCC--CCEec--HHHcCCCCEEEee
Confidence 999875 23332 1456788855443
No 150
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.09 E-value=2.6e-05 Score=77.56 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=67.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~td~~eal~~aDiVIla 206 (420)
+||+|||+|.+|.++|..|+..|..++|.++|++++.++.+...-.+..+. .+..... ..+.+ .+++||+||++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~----~~~~~~i~~~~~~-~l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF----LPSPVKIKAGDYS-DCKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc----cCCCeEEEcCCHH-HhCCCCEEEEc
Confidence 489999999999999999999874458999999987765443321000000 0111122 24554 47899999999
Q ss_pred cChh----------------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 207 Vp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
+... .++++.+.+.++- ++.+++.++|-.
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~ 120 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPV 120 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChH
Confidence 8641 1455556666654 466777777743
No 151
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=8.1e-06 Score=80.58 Aligned_cols=72 Identities=24% Similarity=0.287 Sum_probs=58.9
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+|||.| .||.+||.+|.++| ++|++|++... +++++++.||+||
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~g--atVtv~~~~t~----------------------------~l~e~~~~ADIVI 207 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAH--CSVTVVHSRST----------------------------DAKALCRQADIVV 207 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEECCCCC----------------------------CHHHHHhcCCEEE
Confidence 36899999996 99999999999998 99999976431 5778889999999
Q ss_pred EccChhh-HHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~-l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|++... +... +++++++||+++
T Consensus 208 savg~~~~v~~~------~ik~GaiVIDvg 231 (301)
T PRK14194 208 AAVGRPRLIDAD------WLKPGAVVIDVG 231 (301)
T ss_pred EecCChhcccHh------hccCCcEEEEec
Confidence 9999643 3332 278899999875
No 152
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.05 E-value=3.6e-05 Score=76.70 Aligned_cols=99 Identities=16% Similarity=0.256 Sum_probs=64.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-HHH-hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-INE-KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~-i~~-~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
|||+|||+|.+|+++|..|+..|..++|.++|++++.++. ... .+... +.+ +..+. +++.+ .+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~----~~~i~-~~d~~-~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP-FVK----PVRIY-AGDYA-DCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccc-ccC----CeEEe-eCCHH-HhCCCCEEEE
Confidence 6999999999999999999998744589999998865542 111 11111 111 11222 45664 5899999999
Q ss_pred ccChh----------------hHHHHHHHhhhcCCCCCeEEEecc
Q 014700 206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 206 aVp~~----------------~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+++.. .++++.+++..+- ++.+++..+|
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tN 117 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTN 117 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 98742 1455666666654 4455655565
No 153
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.03 E-value=2.9e-05 Score=72.89 Aligned_cols=171 Identities=13% Similarity=0.214 Sum_probs=105.6
Q ss_pred hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-----------cCCCCCC--CCCC--CCCceE
Q 014700 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----------HCNCRYF--PEQK--LPENVI 188 (420)
Q Consensus 124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-----------g~~~~~l--~~~~--l~~~i~ 188 (420)
|..++.|+|||+|.||+-+|+..+.+| ++|.++|++++.+.+..+. +...... ..+. .-..++
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg--~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSG--LNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcC--CceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 455779999999999999999999999 9999999998765443321 1100000 0000 012456
Q ss_pred EeCCHHHhccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH--HhCCCCCCeEEEEC
Q 014700 189 ATTDAKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ--ALRNPRQPFIALSG 264 (420)
Q Consensus 189 a~td~~eal~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~--~lg~~~~~~~vl~G 264 (420)
.+++..+++.++|+||-++-. +.-+.++++|....++++++.+-+..+... .+...+++ .+++ . -+..
T Consensus 86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt---~ia~~~~~~srf~G----l-HFfN 157 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLT---DIASATQRPSRFAG----L-HFFN 157 (298)
T ss_pred HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHH---HHHhhccChhhhce----e-eccC
Confidence 678888999999999988763 346778888888888888877655444321 11111111 1111 1 1123
Q ss_pred cccHH---HHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700 265 PSFAL---ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTG 311 (420)
Q Consensus 265 P~~a~---ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g 311 (420)
|.-.. |+..+ ...+++.++.+..+-...|...+.+.|--|
T Consensus 158 PvPvMKLvEVir~-------~~TS~eTf~~l~~f~k~~gKttVackDtpG 200 (298)
T KOG2304|consen 158 PVPVMKLVEVIRT-------DDTSDETFNALVDFGKAVGKTTVACKDTPG 200 (298)
T ss_pred CchhHHHhhhhcC-------CCCCHHHHHHHHHHHHHhCCCceeecCCCc
Confidence 33222 22111 123567778888877777887777777654
No 154
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.02 E-value=1.8e-05 Score=69.20 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=57.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|.|||+|.+|.+++..|.+.|. .+|++++|+.++++.+.+..... . -.+...+++.+.+.++|+||.|
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~~------~--~~~~~~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGGV------N--IEAIPLEDLEEALQEADIVINA 82 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTGC------S--EEEEEGGGHCHHHHTESEEEE-
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCcc------c--cceeeHHHHHHHHhhCCeEEEe
Confidence 5799999999999999999999983 45999999999998887753110 0 0123345666678899999999
Q ss_pred cChh
Q 014700 207 MPVQ 210 (420)
Q Consensus 207 Vp~~ 210 (420)
+|..
T Consensus 83 T~~~ 86 (135)
T PF01488_consen 83 TPSG 86 (135)
T ss_dssp SSTT
T ss_pred cCCC
Confidence 9964
No 155
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.98 E-value=0.00016 Score=75.25 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=73.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhc-------CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANK-------KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~a-------G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~ 198 (420)
.-||+|||+ |.+|+++|..|+.. +...++.++|++++.++-..-.-.+.- ..+...+.+.++..+.++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa----~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSL----YPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhh----hhhcCceEEecCCHHHhC
Confidence 569999999 99999999999987 533478899998876543221100000 011123554444446689
Q ss_pred CCcEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700 199 GADYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (420)
Q Consensus 199 ~aDiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg 253 (420)
+||+||++--. ..++++.+.|.++..++.+||.++|-.+ .+..++.+..|
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD-----v~t~v~~k~sg 241 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN-----TNALICLKNAP 241 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH-----HHHHHHHHHcC
Confidence 99999997432 1245556666665567788888887543 33344445444
No 156
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.97 E-value=5.9e-05 Score=74.87 Aligned_cols=112 Identities=12% Similarity=0.195 Sum_probs=71.8
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh
Q 014700 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (420)
Q Consensus 130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~ 209 (420)
|+|||+|.+|+++|..|+..|..+++.++|++++.++.....-.+.. .... ...+...++.+ .+++||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~--~~~~-~~~i~~~~~~~-~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHAS--AFLA-TGTIVRGGDYA-DAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhc--cccC-CCeEEECCCHH-HhCCCCEEEEcCCC
Confidence 68999999999999999988754689999998876554443210000 0011 12344445654 58999999998753
Q ss_pred h----------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH
Q 014700 210 Q----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA 251 (420)
Q Consensus 210 ~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~ 251 (420)
. .++++.+.|..+- ++.+++..+|-.+ .+...+.+.
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d-----~~~~~~~~~ 128 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVD-----ILTYVAQKL 128 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHH-----HHHHHHHHH
Confidence 1 1455666666655 6677777777432 344445444
No 157
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.96 E-value=1.7e-05 Score=81.81 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=70.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH------HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~------~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a 200 (420)
.++|+|||.|++|.+-|..|...| ++|++--|.. +.-+...+.|. .+ .+++|+++.|
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSG--vnVvvglr~~~id~~~~s~~kA~~dGF--------------~v-~~~~Ea~~~A 98 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSG--LDISYALRKEAIAEKRASWRKATENGF--------------KV-GTYEELIPQA 98 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCcccc--ceeEEeccccccccccchHHHHHhcCC--------------cc-CCHHHHHHhC
Confidence 589999999999999999999998 8888555542 22223333332 11 3688999999
Q ss_pred cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
|+|++.+|...-..+.+++.++++++..+. .+-|+.
T Consensus 99 DvVviLlPDt~q~~v~~~i~p~LK~Ga~L~-fsHGFn 134 (487)
T PRK05225 99 DLVINLTPDKQHSDVVRAVQPLMKQGAALG-YSHGFN 134 (487)
T ss_pred CEEEEcCChHHHHHHHHHHHhhCCCCCEEE-ecCCce
Confidence 999999998877777788999999988764 344654
No 158
>PRK15076 alpha-galactosidase; Provisional
Probab=97.95 E-value=3.7e-05 Score=80.04 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=53.4
Q ss_pred CCeEEEEcccHHHHHHHH--HHH-hcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 127 TNKVVVLGGGSFGTAMAA--HVA-NKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~--~La-~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
|+||+|||+|.||.+.+. .++ ..+. +.+|.++|++++.++..... .. ..+.....+..+..++|..+++++||+
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~-~~~~~~~~~~~i~~ttD~~eal~dADf 78 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-AR-KLAESLGASAKITATTDRREALQGADY 78 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HH-HHHHhcCCCeEEEEECCHHHHhCCCCE
Confidence 479999999999977766 554 1111 26999999999876543221 00 001111123467788898888999999
Q ss_pred EEEccC
Q 014700 203 CLHAMP 208 (420)
Q Consensus 203 VIlaVp 208 (420)
||.++-
T Consensus 79 Vv~ti~ 84 (431)
T PRK15076 79 VINAIQ 84 (431)
T ss_pred EeEeee
Confidence 998864
No 159
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.92 E-value=4.7e-05 Score=77.72 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=62.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
||||.|||+|.+|++.|..|++++ +.+|++.+|+.+.++++.+... ..+. ..+ .+.-...+.+++++.|+||.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~~~~v~~---~~v--D~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELIGGKVEA---LQV--DAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhcccccee---EEe--cccChHHHHHHHhcCCEEEE
Confidence 689999999999999999999997 4899999999999998876531 1110 000 00111235577889999999
Q ss_pred ccChhhHHHHHHH
Q 014700 206 AMPVQFSSSFLEG 218 (420)
Q Consensus 206 aVp~~~l~~vl~~ 218 (420)
|.|......+++.
T Consensus 75 ~~p~~~~~~i~ka 87 (389)
T COG1748 75 AAPPFVDLTILKA 87 (389)
T ss_pred eCCchhhHHHHHH
Confidence 9998765555543
No 160
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.90 E-value=6.1e-05 Score=75.63 Aligned_cols=96 Identities=17% Similarity=0.252 Sum_probs=68.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
+..+++|||+|.+|.+.+..|.....-.+|.+|+|++++.+.+.+.-. . +...+.+.+++++++++||+|+.
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~--~------~g~~v~~~~~~~eav~~aDiVit 198 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS--D------YEVPVRAATDPREAVEGCDILVT 198 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH--h------hCCcEEEeCCHHHHhccCCEEEE
Confidence 457999999999999977776543222799999999998877655310 0 01135667899999999999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|+|+.. .++. ...+++++.|..+.
T Consensus 199 aT~s~~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 199 TTPSRK--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred ecCCCC--cEec--HHHcCCCCEEEecC
Confidence 999743 1121 23467888876653
No 161
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=3.4e-05 Score=76.18 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=57.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~-r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV 203 (420)
..++|+||| .|.||.+||.+|.++| ++|++|+ |++ +++++++.||+|
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g--~tVtv~~~rT~-----------------------------~l~e~~~~ADIV 205 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAAN--ATVTIAHSRTR-----------------------------DLPAVCRRADIL 205 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCC--CEEEEECCCCC-----------------------------CHHHHHhcCCEE
Confidence 468999999 9999999999999998 9999995 542 356777899999
Q ss_pred EEccChhh-HHHHHHHhhhcCCCCCeEEEec
Q 014700 204 LHAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 204 IlaVp~~~-l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|.|++... +++ .+++++++||++.
T Consensus 206 Isavg~~~~v~~------~~lk~GavVIDvG 230 (296)
T PRK14188 206 VAAVGRPEMVKG------DWIKPGATVIDVG 230 (296)
T ss_pred EEecCChhhcch------heecCCCEEEEcC
Confidence 99999654 332 2377899998873
No 162
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.87 E-value=0.0001 Score=73.74 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=65.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDiVI 204 (420)
..+||+|||+|.+|.++|..|+..|...++.++|++++.++.....-.+... +...+... ++. +.+++||+||
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-----~~~~~~i~~~~~-~~~~~adivI 78 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-----FTSPTKIYAGDY-SDCKDADLVV 78 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-----ccCCeEEEeCCH-HHhCCCCEEE
Confidence 4579999999999999999999887433899999987654333221101000 10122333 454 4589999999
Q ss_pred EccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 205 HAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 205 laVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
++--. . .++++++.+.++- ++.+++..+|-.
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~ 125 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPV 125 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcH
Confidence 96432 0 1444555555543 466777777743
No 163
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.86 E-value=7.8e-05 Score=72.35 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=65.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
+|||+|+|+ |.||..++..+.+.. ++++. +++++++..... . ..++..++|+++++.++|+||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~-~~elvav~d~~~~~~~~~-~-------------~~~i~~~~dl~~ll~~~DvVi 65 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAE-DLELVAAVDRPGSPLVGQ-G-------------ALGVAITDDLEAVLADADVLI 65 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCcccccc-C-------------CCCccccCCHHHhccCCCEEE
Confidence 479999998 999999999887653 26666 467776533221 0 012345568888888899999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
.++++....+.+..... .+..+|..+.|+..+.
T Consensus 66 d~t~p~~~~~~~~~al~---~G~~vvigttG~s~~~ 98 (257)
T PRK00048 66 DFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQ 98 (257)
T ss_pred ECCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence 88888777766655544 4555555566777653
No 164
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.86 E-value=4.4e-05 Score=75.44 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=90.1
Q ss_pred cccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
+|...+++-.++.|.|++. ..++.+++ .++++|||.|.+|+-+|.++..-| ..|+.+|.-. ..+...
T Consensus 119 aR~i~~A~~s~k~g~wnr~--------~~~G~el~--GKTLgvlG~GrIGseVA~r~k~~g--m~vI~~dpi~-~~~~~~ 185 (406)
T KOG0068|consen 119 ARQIGQASASMKEGKWNRV--------KYLGWELR--GKTLGVLGLGRIGSEVAVRAKAMG--MHVIGYDPIT-PMALAE 185 (406)
T ss_pred hhhcchhheeeecCceeec--------ceeeeEEe--ccEEEEeecccchHHHHHHHHhcC--ceEEeecCCC-chHHHH
Confidence 3666777777888977774 45566777 889999999999999999998877 7787777432 112333
Q ss_pred HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHHH-hhhcCCCCCeEEEeccCCCcch
Q 014700 170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLEG-ISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~~-i~~~l~~~~iVVs~snGi~~~t 240 (420)
..| ++.. +++|++..||+|-+-+|. ..++.++.. ....+++|..||+++.|-..++
T Consensus 186 a~g--------------vq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe 243 (406)
T KOG0068|consen 186 AFG--------------VQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDE 243 (406)
T ss_pred hcc--------------ceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceech
Confidence 333 2222 678999999999999994 557777743 3455788999999999866553
No 165
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.85 E-value=7.7e-05 Score=71.00 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=64.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eCC---HHHh-ccCCcE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTD---AKTA-LLGADY 202 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~td---~~ea-l~~aDi 202 (420)
|+|.|||+|.+|..+|..|.+.| |+|.+++++++.+++......... .+.. .++ ++++ +.++|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~~~~~~---------~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLADELDTH---------VVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhhhcceE---------EEEecCCCHHHHHhcCCCcCCE
Confidence 79999999999999999999998 999999999998877443211100 0111 112 3444 668999
Q ss_pred EEEccChhhHHHHHHHhhhc-CCCCCeEE
Q 014700 203 CLHAMPVQFSSSFLEGISDY-VDPGLPFI 230 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~-l~~~~iVV 230 (420)
++.++..+....++-.+... +.-..++.
T Consensus 70 vva~t~~d~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 70 VVAATGNDEVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred EEEeeCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 99999988877777666533 44334443
No 166
>PLN02602 lactate dehydrogenase
Probab=97.82 E-value=0.00019 Score=72.81 Aligned_cols=102 Identities=20% Similarity=0.382 Sum_probs=66.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
+||+|||+|.+|+++|..|+..+...++.++|++++.++..... +... +++ ...+....+.++ +++||+||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~~----~~~i~~~~dy~~-~~daDiVVi 111 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FLP----RTKILASTDYAV-TAGSDLCIV 111 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cCC----CCEEEeCCCHHH-hCCCCEEEE
Confidence 69999999999999999999887545899999987654322211 1110 110 123444457765 899999999
Q ss_pred ccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 206 AMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 206 aVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
+--. ..++++.+.|..+ .++.++|.++|-.
T Consensus 112 tAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv 157 (350)
T PLN02602 112 TAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV 157 (350)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence 8421 1234555566664 3567788788754
No 167
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.81 E-value=0.0001 Score=66.43 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=60.4
Q ss_pred cchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700 120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (420)
Q Consensus 120 ~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~ 199 (420)
.++++-..+++.|+|.|.+|..+|..|...| .+|++++++|-.+-+....|. .+. +.+++++.
T Consensus 16 ~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~alqA~~dGf--------------~v~-~~~~a~~~ 78 (162)
T PF00670_consen 16 ATNLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIRALQAAMDGF--------------EVM-TLEEALRD 78 (162)
T ss_dssp HH-S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHHHTT---------------EEE--HHHHTTT
T ss_pred cCceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHHHHHhhhcCc--------------Eec-CHHHHHhh
Confidence 3567777899999999999999999999988 899999999865433333332 332 67899999
Q ss_pred CcEEEEccChhhH--HHHHHHhhhcCCCCCeEEEec
Q 014700 200 ADYCLHAMPVQFS--SSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 200 aDiVIlaVp~~~l--~~vl~~i~~~l~~~~iVVs~s 233 (420)
+|++|.++-...+ .+-+ ..+++++++.++.
T Consensus 79 adi~vtaTG~~~vi~~e~~----~~mkdgail~n~G 110 (162)
T PF00670_consen 79 ADIFVTATGNKDVITGEHF----RQMKDGAILANAG 110 (162)
T ss_dssp -SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESS
T ss_pred CCEEEECCCCccccCHHHH----HHhcCCeEEeccC
Confidence 9999999886542 3333 3366777776654
No 168
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.80 E-value=0.00026 Score=69.11 Aligned_cols=126 Identities=16% Similarity=0.190 Sum_probs=76.8
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEE-EEeCCH-HHH-HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDP-AVC-QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~-l~~r~~-~~~-~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
||||+|+| +|.||..++..+.+.. ++++. +++|.. +.. +.+.+. .+. .+.++.+++|+++...++|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~~~~~~-------~~~-~~~gv~~~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGTDAGEL-------AGI-GKVGVPVTDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCCCHHHh-------cCc-CcCCceeeCCHHHhcCCCCE
Confidence 47999999 5999999999998752 36666 466432 211 111110 000 01135667788886456899
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE 270 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e 270 (420)
||.++++..+.+.+..... .+..+|..+.|+..+..+.+.+..++ ....++.+|++.-.
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l~~aA~~------~g~~v~~a~NfSlG 130 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQELADLAEK------AGIAAVIAPNFSIG 130 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHhc------CCccEEEECcccHH
Confidence 9999998888777766544 45666666668865533333222221 12456777777653
No 169
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.80 E-value=0.00028 Score=66.36 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=66.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|+|++||+|++|..+...+...-.+ .-|.+|||+.+++..+.+.-. .+..++++|.+.+.|+++-|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~-------------~~~~s~ide~~~~~DlvVEa 67 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG-------------RRCVSDIDELIAEVDLVVEA 67 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC-------------CCccccHHHHhhccceeeee
Confidence 6899999999999999988754111 356789999998887766321 12236888888999999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
-..+++++...++... ..+.+|+|+
T Consensus 68 AS~~Av~e~~~~~L~~-g~d~iV~SV 92 (255)
T COG1712 68 ASPEAVREYVPKILKA-GIDVIVMSV 92 (255)
T ss_pred CCHHHHHHHhHHHHhc-CCCEEEEec
Confidence 9999999888777542 123444443
No 170
>PRK05442 malate dehydrogenase; Provisional
Probab=97.78 E-value=7.6e-05 Score=74.93 Aligned_cols=106 Identities=17% Similarity=0.260 Sum_probs=68.3
Q ss_pred hcCCCeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEEeCCHH--HHH----HHHHhcCCCCCCCCCCCCCceEEeC
Q 014700 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPA--VCQ----SINEKHCNCRYFPEQKLPENVIATT 191 (420)
Q Consensus 124 ~~~~mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~~r~~~--~~~----~i~~~g~~~~~l~~~~l~~~i~a~t 191 (420)
|++++||+|||+ |.+|+.+|..|...+.-. ++.++|+++. +++ .+.. ... .+...+.+++
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~--~~~------~~~~~~~i~~ 72 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDD--CAF------PLLAGVVITD 72 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhh--hhh------hhcCCcEEec
Confidence 456789999998 999999999998766323 7999998542 111 1111 100 0111234444
Q ss_pred CHHHhccCCcEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 192 DAKTALLGADYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 192 d~~eal~~aDiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
+..+.+++||+||++--. ..++++.++|.++.+++.+++.++|-++
T Consensus 73 ~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 73 DPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred ChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 555668999999986421 1255666677776666788888888554
No 171
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.78 E-value=0.00022 Score=69.56 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=60.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
||||+|||+|+||..++..|.+.. +.++... +++.. .+...+.. ...+.+++|+++...+.|+|+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~-~~~l~~v~~~~~~-~~~~~~~~-----------~~~~~~~~d~~~l~~~~DvVve 67 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDP-DLRVDWVIVPEHS-IDAVRRAL-----------GEAVRVVSSVDALPQRPDLVVE 67 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCC-CceEEEEEEcCCC-HHHHhhhh-----------ccCCeeeCCHHHhccCCCEEEE
Confidence 579999999999999999998753 2565543 34322 11211110 0124566788776456899999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG 235 (420)
|+|...+.+....+.. .+.-++..+.|
T Consensus 68 ~t~~~~~~e~~~~aL~---aGk~Vvi~s~~ 94 (265)
T PRK13303 68 CAGHAALKEHVVPILK---AGIDCAVISVG 94 (265)
T ss_pred CCCHHHHHHHHHHHHH---cCCCEEEeChH
Confidence 9999887766665543 45666655554
No 172
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.78 E-value=0.00013 Score=72.80 Aligned_cols=107 Identities=14% Similarity=0.313 Sum_probs=65.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCC-CCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~-l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
|||+|||+ |.+|..++..|+..|...+|+++||++ ..+.+......... +........+..++|.++ +++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~-~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK-SLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc-cccccccccchhhhchhccCCCcEEEECCCHHH-hCCCCEEEE
Confidence 79999998 999999999999988434699999954 12222211110000 000001123555567654 899999999
Q ss_pred ccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 206 AMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 206 aVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
++.. ..++++.+.|.++. ++.++|..+|.++
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd 125 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 9752 12455556666655 4566766776544
No 173
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.77 E-value=0.00022 Score=71.03 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=63.0
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eCCHHHhccCCcEEEEcc
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHAM 207 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~td~~eal~~aDiVIlaV 207 (420)
||+|||+|.+|+++|..|+..+...++.++|++++.++-....-.+.. .+.....+++ ..|.+ .+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~---~~~~~~~~~i~~~~y~-~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT---ALTYSTNTKIRAGDYD-DCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh---ccCCCCCEEEEECCHH-HhCCCCEEEECC
Confidence 799999999999999999988754589999998754322111100000 0000112233 34554 589999999975
Q ss_pred Ch-----hh-------------HHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 208 PV-----QF-------------SSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 208 p~-----~~-------------l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
-. .. ++++.+.+..+- ++.+++.++|..+
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvD 123 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLD 123 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHH
Confidence 31 11 233444455544 5778888888543
No 174
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.76 E-value=0.0002 Score=66.91 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=61.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl 205 (420)
.|+|+|+|+|+||..+|..|.+.| ++|+++|++++.++.+.+.. . .... +.++.. .+||+++-
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~~~~~~~~~~~~-g------------~~~v-~~~~l~~~~~Dv~vp 91 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADINEEAVARAAELF-G------------ATVV-APEEIYSVDADVFAP 91 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHc-C------------CEEE-cchhhccccCCEEEe
Confidence 579999999999999999999998 89999999998877776531 0 1222 223333 37999996
Q ss_pred ccChh-hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 206 aVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
|.... -..+.++++ + ..+|+.-.|+-
T Consensus 92 ~A~~~~I~~~~~~~l----~-~~~v~~~AN~~ 118 (200)
T cd01075 92 CALGGVINDDTIPQL----K-AKAIAGAANNQ 118 (200)
T ss_pred cccccccCHHHHHHc----C-CCEEEECCcCc
Confidence 65533 233444443 2 45777777763
No 175
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.76 E-value=0.00019 Score=74.44 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=66.9
Q ss_pred hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (420)
Q Consensus 124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV 203 (420)
....++|+|+|+|.+|..+|..|...| .+|+++++++.+.......|. .+ .+++++++.+|+|
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~G~--------------~v-~~l~eal~~aDVV 271 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMDGF--------------RV-MTMEEAAELGDIF 271 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhcCC--------------Ee-cCHHHHHhCCCEE
Confidence 345689999999999999999999988 799999999876544333221 11 2567888899999
Q ss_pred EEccChhhHHHHHH-HhhhcCCCCCeEEEec
Q 014700 204 LHAMPVQFSSSFLE-GISDYVDPGLPFISLS 233 (420)
Q Consensus 204 IlaVp~~~l~~vl~-~i~~~l~~~~iVVs~s 233 (420)
|.++.... +++ .....++++.+++++.
T Consensus 272 I~aTG~~~---vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 272 VTATGNKD---VITAEHMEAMKDGAILANIG 299 (425)
T ss_pred EECCCCHH---HHHHHHHhcCCCCCEEEEcC
Confidence 99986533 343 4556678888888764
No 176
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.75 E-value=0.0001 Score=77.05 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=67.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
..++|+|||.|.+|..+|..|...| .+|+++++++.........| +.. .+++++++.+|+|++
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~~G--------------~~~-~~leell~~ADIVI~ 315 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAMEG--------------YQV-VTLEDVVETADIFVT 315 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHhcC--------------cee-ccHHHHHhcCCEEEE
Confidence 4689999999999999999999877 89999998876543322222 111 257788899999999
Q ss_pred ccChhhHHHHH-HHhhhcCCCCCeEEEeccC
Q 014700 206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKG 235 (420)
Q Consensus 206 aVp~~~l~~vl-~~i~~~l~~~~iVVs~snG 235 (420)
++.. ..++ .+....++++.+++++..+
T Consensus 316 atGt---~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 316 ATGN---KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCCc---ccccCHHHHhccCCCcEEEEcCCC
Confidence 9753 3344 2455667899999998665
No 177
>PLN00203 glutamyl-tRNA reductase
Probab=97.74 E-value=0.00016 Score=76.95 Aligned_cols=98 Identities=15% Similarity=0.262 Sum_probs=68.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|+|||+|.||..++..|...|. .+|++++|+.++++.+.+... +... .+...++..+++.++|+||.|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~------g~~i--~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFP------DVEI--IYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhC------CCce--EeecHhhHHHHHhcCCEEEEc
Confidence 5799999999999999999998872 479999999998888876421 1000 112234666778999999999
Q ss_pred cChhh---HHHHHHHhhhcC---CCCCeEEEec
Q 014700 207 MPVQF---SSSFLEGISDYV---DPGLPFISLS 233 (420)
Q Consensus 207 Vp~~~---l~~vl~~i~~~l---~~~~iVVs~s 233 (420)
+++.. ..+.++.+.+.- ....++|+++
T Consensus 337 T~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 337 TSSETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred cCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 97532 555666553221 1224677775
No 178
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.74 E-value=0.00016 Score=72.66 Aligned_cols=94 Identities=11% Similarity=0.180 Sum_probs=67.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
+..+|+|||+|.+|...+..++. .+. .+|.+|+|++++.+++.+.-.. . ++..+...+++++++.++|+|+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~-~~v~v~~r~~~~a~~~~~~~~~-~------~~~~~~~~~~~~~~~~~aDiVi 197 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDI-ERVRVYSRTFEKAYAFAQEIQS-K------FNTEIYVVNSADEAIEEADIIV 197 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCc-cEEEEECCCHHHHHHHHHHHHH-h------cCCcEEEeCCHHHHHhcCCEEE
Confidence 45789999999999988877754 332 6899999999988777653100 0 0112455678888999999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+|+.. .++. ..+++++.|+.+
T Consensus 198 ~aT~s~~--p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 198 TVTNAKT--PVFS---EKLKKGVHINAV 220 (325)
T ss_pred EccCCCC--cchH---HhcCCCcEEEec
Confidence 9999763 2332 456788888765
No 179
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.74 E-value=0.00015 Score=61.95 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=63.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 129 kI~IIGa-GamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
||+|+|+ |.+|..++..|.+.. ++++..+ +++.+..+.+...+.... ..... .. ...+.+ ..++|+||+|
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~-~~~l~av~~~~~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~~--~~~~DvV~~~ 72 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP-DFEVVALAASARSAGKRVSEAGPHLK---GEVVL-EL-EPEDFE--ELAVDIVFLA 72 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC-CceEEEEEechhhcCcCHHHHCcccc---ccccc-cc-ccCChh--hcCCCEEEEc
Confidence 6999995 999999999998852 2677755 555433334433321110 00000 00 001232 2489999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
+|.....+++..+.+.+.+++++|+++.-+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 73 LPHGVSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred CCcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence 999988888776666678899999988643
No 180
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.73 E-value=0.00019 Score=71.53 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=71.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe---CCHHHhccCCcEE
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC 203 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~---td~~eal~~aDiV 203 (420)
|||+|||+ |.+|+++|..|+..+...++.++|++ .++ |... .+.....+..++.. +|+.+.+++||+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~-----g~al-DL~~~~~~~~i~~~~~~~~~y~~~~daDiv 72 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP-----GVAA-DLSHINTPAKVTGYLGPEELKKALKGADVV 72 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc-----eeeh-HhHhCCCcceEEEecCCCchHHhcCCCCEE
Confidence 69999999 99999999999887754589999987 111 1100 01111112245542 2344568999999
Q ss_pred EEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700 204 LHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (420)
Q Consensus 204 IlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg 253 (420)
|++.-. ..++++.+.+.++ .++.++|.++|..+.-+ ..+...+.+..+
T Consensus 73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv~~-~i~t~~~~~~s~ 136 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNSTV-PIAAEVLKKAGV 136 (310)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhhHH-HHHHHHHHHhcC
Confidence 987532 1245555666665 46888888998654210 112455555544
No 181
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.71 E-value=0.0003 Score=72.51 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=67.4
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
...++|+|+|+|.+|..+|..+...| .+|+++++++.+.......|. .+ .+++++++.+|+||
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~~G~--------------~v-~~leeal~~aDVVI 255 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAMDGF--------------RV-MTMEEAAKIGDIFI 255 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHhcCC--------------Ee-CCHHHHHhcCCEEE
Confidence 34679999999999999999999888 899999999865443333221 11 24567788999999
Q ss_pred EccChhhHHHHHH-HhhhcCCCCCeEEEeccC
Q 014700 205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKG 235 (420)
Q Consensus 205 laVp~~~l~~vl~-~i~~~l~~~~iVVs~snG 235 (420)
.++.... ++. +....++++.+++++.-+
T Consensus 256 taTG~~~---vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 256 TATGNKD---VIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ECCCCHH---HHHHHHHhcCCCCcEEEEECCC
Confidence 9887543 333 355677889999887653
No 182
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.68 E-value=0.00014 Score=75.61 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=65.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
..++|+|||+|.||..++..|...|. .+|++++|++++.+.+.+... . .+....+..+++.++|+||.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g------~-----~~~~~~~~~~~l~~aDvVI~ 248 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG------G-----EAIPLDELPEALAEADIVIS 248 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC------C-----cEeeHHHHHHHhccCCEEEE
Confidence 35799999999999999999998872 389999999988776665421 0 11122356667889999999
Q ss_pred ccChhh---HHHHHHHhh-hcCCCCCeEEEecc
Q 014700 206 AMPVQF---SSSFLEGIS-DYVDPGLPFISLSK 234 (420)
Q Consensus 206 aVp~~~---l~~vl~~i~-~~l~~~~iVVs~sn 234 (420)
|+++.. ..+.++... ..-..+.+++++..
T Consensus 249 aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 249 STGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 998643 233333322 11123467788764
No 183
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.64 E-value=0.00023 Score=74.12 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=59.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH-hcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH 205 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~-~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIl 205 (420)
|+|.|+|+|.+|..++..|.+.| ++|++++++++.++.+.+ .+.... ..+. .-...++++ +.++|.||+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~~~~~~~~~~~~~~~-~gd~------~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEERLRRLQDRLDVRTV-VGNG------SSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhhcCEEEE-EeCC------CCHHHHHHcCCCcCCEEEE
Confidence 68999999999999999999988 899999999998888765 221110 0110 001123444 678999999
Q ss_pred ccChhhHHHHHHHhh
Q 014700 206 AMPVQFSSSFLEGIS 220 (420)
Q Consensus 206 aVp~~~l~~vl~~i~ 220 (420)
+++.+.....+....
T Consensus 72 ~~~~~~~n~~~~~~~ 86 (453)
T PRK09496 72 VTDSDETNMVACQIA 86 (453)
T ss_pred ecCChHHHHHHHHHH
Confidence 999876555443333
No 184
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.63 E-value=0.00026 Score=70.97 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=64.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHHhcCCCCCCCCCCCCCceEEeCCH---HHhccC
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDA---KTALLG 199 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~--~i~~~g~~~~~l~~~~l~~~i~a~td~---~eal~~ 199 (420)
.|+||+|||+ |.+|+.+|..|+..+...++.++|++....+ .+.. .. ....+...+|+ .+++++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~--~~--------~~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSH--ID--------TPAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhh--cC--------cCceEEEecCCCchHHHhCC
Confidence 3679999998 9999999999996664468999998421111 1111 00 01134433332 467899
Q ss_pred CcEEEEccCh--h--------------hHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 200 ADYCLHAMPV--Q--------------FSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 200 aDiVIlaVp~--~--------------~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
+|+||++.-. . .++++++.+..+ .++.+|+..+|+++.
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 9999987532 1 233444455444 456788888887654
No 185
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.63 E-value=0.00031 Score=69.92 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=67.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
+.++|+|||+|.+|...+..+.. .+. .+|.+|+|++++.+.+.+.-.. . ...+. ..+.++++.++|+|+
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~------~--~~~~~-~~~~~~av~~aDiVi 193 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARA------L--GPTAE-PLDGEAIPEAVDLVV 193 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHh------c--CCeeE-ECCHHHHhhcCCEEE
Confidence 35799999999999999999975 332 5899999999988877664210 0 00122 467888899999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|+|+.. .++. ..+++++.|..+.
T Consensus 194 taT~s~~--Pl~~---~~~~~g~hi~~iG 217 (304)
T PRK07340 194 TATTSRT--PVYP---EAARAGRLVVAVG 217 (304)
T ss_pred EccCCCC--ceeC---ccCCCCCEEEecC
Confidence 9999764 2232 2357888776653
No 186
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.62 E-value=0.00015 Score=62.10 Aligned_cols=97 Identities=18% Similarity=0.304 Sum_probs=62.4
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC-CHHHhccCCcEEEE
Q 014700 129 KVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH 205 (420)
Q Consensus 129 kI~IIG-aGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t-d~~eal~~aDiVIl 205 (420)
||+||| .|.+|..+...|.+.- ..++. ++.+++..-+.+........ + ...+.+.+ +.++ +.++|+||+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp-~~e~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~~~~~~~~~~-~~~~Dvvf~ 72 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP-DFELVALVSSSRSAGKPLSEVFPHPK---G---FEDLSVEDADPEE-LSDVDVVFL 72 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS-TEEEEEEEESTTTTTSBHHHTTGGGT---T---TEEEBEEETSGHH-HTTESEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCC-CccEEEeeeeccccCCeeehhccccc---c---ccceeEeecchhH-hhcCCEEEe
Confidence 799999 8999999999999853 35655 45555522223333211000 0 01222222 4444 689999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
|+|.....++...+. +++..||+++.-+
T Consensus 73 a~~~~~~~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 73 ALPHGASKELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp -SCHHHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred cCchhHHHHHHHHHh---hCCcEEEeCCHHH
Confidence 999998888887774 3678899987543
No 187
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.62 E-value=0.0005 Score=68.35 Aligned_cols=104 Identities=18% Similarity=0.290 Sum_probs=65.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC--CHHHhccCCcEEEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCLH 205 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t--d~~eal~~aDiVIl 205 (420)
|||+|||+|.+|+++|..|...+.+.++.++|+.++..+-.. ....+-.- .+.....+.. +.+ .++++|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a---~DL~~~~~-~~~~~~~i~~~~~y~-~~~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVA---LDLSHAAA-PLGSDVKITGDGDYE-DLKGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchh---cchhhcch-hccCceEEecCCChh-hhcCCCEEEE
Confidence 699999999999999999988776569999999854322110 00000000 1112233333 344 4899999999
Q ss_pred cc--Ch--------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 206 AM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 206 aV--p~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
+- |- ..++++.+++..+. ++.+++.++|.++
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD 122 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVD 122 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHH
Confidence 76 31 12445556666655 4778888888554
No 188
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.62 E-value=0.00034 Score=72.61 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=64.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|+|||+|.||..++..|...|. .+|++++|+.++++.+.+... . ......++.+++.++|+||.|
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g------~-----~~i~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG------G-----EAVKFEDLEEYLAEADIVISS 247 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC------C-----eEeeHHHHHHHHhhCCEEEEC
Confidence 4799999999999999999998773 689999999987776665311 0 011123566778899999999
Q ss_pred cChhh---HHHHHHHhhhcCCCCCeEEEecc
Q 014700 207 MPVQF---SSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 207 Vp~~~---l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+++.. ..+.++.....-+...+++++..
T Consensus 248 T~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 248 TGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred CCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 98543 22333332211112346777753
No 189
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.61 E-value=0.00048 Score=69.14 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=71.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEEeCCH--HHH--HHHHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDP--AVC--QSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~~r~~--~~~--~~i~~~g~~~~~l~~~~l~~~i~a~td~~e 195 (420)
+..||+|||+ |.+|+++|..|...+.-. ++.++|+.+ +++ +.+--.+....+. .+..+..+..+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~------~~~~i~~~~~~ 75 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL------AGVVATTDPEE 75 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc------CCcEEecChHH
Confidence 3579999998 999999999999877423 799999854 212 1111111110111 12233344445
Q ss_pred hccCCcEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh
Q 014700 196 ALLGADYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL 252 (420)
Q Consensus 196 al~~aDiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~l 252 (420)
.+++||+||++--. ..++++.++|.++-+++.+++.++|-++ .+..++.+..
T Consensus 76 ~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD-----v~t~v~~k~s 143 (323)
T TIGR01759 76 AFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN-----TNALIASKNA 143 (323)
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH-----HHHHHHHHHc
Confidence 68999999987421 1255666777777655788888887543 3334444544
No 190
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.59 E-value=0.00024 Score=71.29 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=65.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEEeCCHHH--HHH--HHHhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPAV--CQS--INEKHCNCRYFPEQKLPENVIATTDAKTA 196 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~~r~~~~--~~~--i~~~g~~~~~l~~~~l~~~i~a~td~~ea 196 (420)
.+||+|||+ |.+|+++|..|+..+..- ++.++|+.+.. ++. +--.+... .+...+.+.++..+.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~------~~~~~~~i~~~~~~~ 75 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF------PLLAEIVITDDPNVA 75 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc------cccCceEEecCcHHH
Confidence 469999999 999999999999877423 79999985421 111 10001100 111123444444466
Q ss_pred ccCCcEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 197 LLGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 197 l~~aDiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
+++||+||++--. . .++++.++|.++-+++.++|.++|-++
T Consensus 76 ~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (322)
T cd01338 76 FKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN 132 (322)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH
Confidence 8999999997422 1 255566667676645777777787543
No 191
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.57 E-value=0.006 Score=62.11 Aligned_cols=231 Identities=15% Similarity=0.160 Sum_probs=135.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCC-CCCC-CCC------CCCCceE---EeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CRYF-PEQ------KLPENVI---ATTDAKT 195 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~-~~~l-~~~------~l~~~i~---a~td~~e 195 (420)
|.+|.|+|+|..+--+|..|.+.+ .+.|-+..|...+.+++.+.-.. ...+ ... .+...+. +..+.++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~ 79 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEE 79 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHH
Confidence 468999999999999999999876 46899999977666555432111 0000 000 0111111 3457788
Q ss_pred hccCCcEEEEccChhhHHHHHHHhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE---CcccHH--
Q 014700 196 ALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS---GPSFAL-- 269 (420)
Q Consensus 196 al~~aDiVIlaVp~~~l~~vl~~i~-~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~---GP~~a~-- 269 (420)
...+-|.+|+|||+++..+++++|. ..++.=+.||.++..++.. ..+...+.+. +.. ..+..++ |.....
T Consensus 80 i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~--~lv~~~l~~~-~~~-~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 80 IEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSH--LLVKGFLNDL-GPD-AEVISFSTYYGDTRWSDG 155 (429)
T ss_pred hcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchH--HHHHHHHHhc-CCC-ceEEEeecccccceeccC
Confidence 7788999999999999999999984 3455445666677666643 2334444432 211 1111111 111100
Q ss_pred ----H-HhhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH--------HHHHHHHHHHHHH-hc-
Q 014700 270 ----E-LMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA--------LKNVLAIAAGIVV-GM- 332 (420)
Q Consensus 270 ----e-v~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a--------lkNv~Ai~~G~~~-gl- 332 (420)
. +..+....+.+++ .+...+++++.+|+..|+.+...+....+|-... +.|-+++.+-... ..
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~ 235 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP 235 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence 0 1112122345554 3456789999999999999999888777765322 2222333222111 11
Q ss_pred ----c---cch--hHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700 333 ----N---LGN--NSMAALVAQGCSEIRWLATKMGAKPA 362 (420)
Q Consensus 333 ----~---lg~--N~~~al~~~~~~E~~~lA~a~Gi~~~ 362 (420)
| -|. .....-+...-+||..+-.++|+++-
T Consensus 236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~ 274 (429)
T PF10100_consen 236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPF 274 (429)
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 1 122 12223356667899999999998743
No 192
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.57 E-value=0.00035 Score=70.24 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=66.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
+.++|+|||+|.+|.+.+..|.....-.+|.+|+|++++++.+.+.... . +...+...+|+++++.++|+|+.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-~------~g~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-E------LGIPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-c------cCceEEEeCCHHHHHccCCEEEE
Confidence 3579999999999999888887532126899999999998888764211 0 01124556788899999999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFIS 231 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs 231 (420)
|+|+.. .++.. ..+++++.|..
T Consensus 204 aT~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 204 TTPSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred eeCCCC--cEecH--HHcCCCceEEe
Confidence 999753 22211 22456666544
No 193
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.57 E-value=8.1e-05 Score=69.97 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=75.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAKT 195 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~-----------i~~~g~~~~~l~~~~l~~~i~a~td~~e 195 (420)
.-||+|+|.|.+|+++|..++..| ++|.+||..++.++. +.+.|.-...+....--.-|..+++++|
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~G--yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSG--YQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred ccceeEeecccccchHHHHHhccC--ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 459999999999999999999998 999999999876432 2222211000000000113456789999
Q ss_pred hccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
++++|=.|--|+|.. .-+.+.+++-..+.+.+++-+.+..+.+
T Consensus 81 ~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mp 125 (313)
T KOG2305|consen 81 LVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMP 125 (313)
T ss_pred HHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccCh
Confidence 999999999999964 3556667777777777766665555544
No 194
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.56 E-value=0.00037 Score=69.59 Aligned_cols=98 Identities=19% Similarity=0.320 Sum_probs=61.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
+..+++|||+|..|..-+..|...-.-.+|.+|+|+++.++++.+.-.. +...+...+|+++++++||+|+.
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~--------~~~~v~~~~~~~~av~~aDii~t 198 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD--------LGVPVVAVDSAEEAVRGADIIVT 198 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC--------CCTCEEEESSHHHHHTTSSEEEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc--------ccccceeccchhhhcccCCEEEE
Confidence 3568999999999999988887632126899999999988877664211 11246778899999999999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|+++.....++. ...+++++.|..+.
T Consensus 199 aT~s~~~~P~~~--~~~l~~g~hi~~iG 224 (313)
T PF02423_consen 199 ATPSTTPAPVFD--AEWLKPGTHINAIG 224 (313)
T ss_dssp ----SSEEESB---GGGS-TT-EEEE-S
T ss_pred ccCCCCCCcccc--HHHcCCCcEEEEec
Confidence 999755111121 34677888887664
No 195
>PLN02494 adenosylhomocysteinase
Probab=97.55 E-value=0.00041 Score=72.44 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=66.7
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
...++|+|+|+|.+|..+|..+...| .+|+++++++.+.......|. .. .+.+++++.+|+||
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~G~--------------~v-v~leEal~~ADVVI 314 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALMEGY--------------QV-LTLEDVVSEADIFV 314 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhcCC--------------ee-ccHHHHHhhCCEEE
Confidence 34689999999999999999998877 899999998865433333332 11 15678888999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
.++....+ +.++....++++.+++++..
T Consensus 315 ~tTGt~~v--I~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTGNKDI--IMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCCCccc--hHHHHHhcCCCCCEEEEcCC
Confidence 97775542 11344556788999998865
No 196
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.54 E-value=0.00045 Score=68.99 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=72.3
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-C--CHHHhccCCcEEE
Q 014700 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-T--DAKTALLGADYCL 204 (420)
Q Consensus 129 kI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-t--d~~eal~~aDiVI 204 (420)
||+|||+ |++|+++|..|+..+...++.++|+++.. |... .+.....+..+..+ . ++.+++++||+||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-------g~a~-DL~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-------GVAA-DLSHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-------EEEc-hhhcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 7999999 99999999999888744589999987621 2111 11111112245542 2 3356799999999
Q ss_pred EccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700 205 HAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN 254 (420)
Q Consensus 205 laVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~ 254 (420)
++.-. ..++++.+.+..+ .++.++|.++|..+... ..+...+.+..|-
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv~~-~i~t~~~~~~sg~ 136 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNSTV-PIAAEVLKKKGVY 136 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhhHH-HHHHHHHHHhcCC
Confidence 87532 1245555666665 47888888998654211 1245555555443
No 197
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.53 E-value=0.00063 Score=70.35 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=67.7
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
...++|+|+|+|.+|..++..+...| .+|+++++++.+.+...+.|. ... +.+++++++|+||
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~G~--------------~~~-~~~e~v~~aDVVI 262 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAMEGY--------------EVM-TMEEAVKEGDIFV 262 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhcCC--------------EEc-cHHHHHcCCCEEE
Confidence 34679999999999999999999988 799999999887666555442 111 3467788999999
Q ss_pred EccChhhHHHHHH-HhhhcCCCCCeEEEecc
Q 014700 205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSK 234 (420)
Q Consensus 205 laVp~~~l~~vl~-~i~~~l~~~~iVVs~sn 234 (420)
.|+.... ++. .....++++.+++++..
T Consensus 263 ~atG~~~---~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 263 TTTGNKD---IITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ECCCCHH---HHHHHHHhcCCCCcEEEEeCC
Confidence 9987543 233 33566788888887753
No 198
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.52 E-value=0.0004 Score=70.29 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=68.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
+..+++|||+|..+..-...+..--.-.+|++|+|++++.+++.+.-.. ....+.+.+++++++++||+|+.
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIIvt 199 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG--------PGLRIVACRSVAEAVEGADIITT 199 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh--------cCCcEEEeCCHHHHHhcCCEEEE
Confidence 4578999999999988877665432126999999999988777654211 01135667899999999999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
|+++.....+++ .+.+++++.|..+
T Consensus 200 aT~S~~~~Pvl~--~~~lkpG~hV~aI 224 (346)
T PRK07589 200 VTADKTNATILT--DDMVEPGMHINAV 224 (346)
T ss_pred ecCCCCCCceec--HHHcCCCcEEEec
Confidence 998654222232 2456788876654
No 199
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.52 E-value=0.0018 Score=65.47 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=64.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH-HhccCCcEEE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK-TALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~-eal~~aDiVI 204 (420)
|+||+|||+ |.+|..++..|.+.. ++++..+.++.+..+.+.+.+.. +.+. .... ..+.+ ....++|+||
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p-~~elv~v~~~~~~g~~l~~~~~~---~~~~---~~~~-~~~~~~~~~~~vD~Vf 73 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP-EVEIVAVTSRSSAGKPLSDVHPH---LRGL---VDLV-LEPLDPEILAGADVVF 73 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC-CceEEEEECccccCcchHHhCcc---cccc---cCce-eecCCHHHhcCCCEEE
Confidence 589999997 999999999998763 36776655433322233332110 0000 0011 11221 1356899999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
+|+|.....++...+.. .+..||+++..+-.
T Consensus 74 ~alP~~~~~~~v~~a~~---aG~~VID~S~~fR~ 104 (343)
T PRK00436 74 LALPHGVSMDLAPQLLE---AGVKVIDLSADFRL 104 (343)
T ss_pred ECCCcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence 99999888887777654 57889999876543
No 200
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.00019 Score=70.38 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=57.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+|||. |.||.+||..|.++| +.|++|... +.++++.++.||+||
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~g--atVtv~~s~----------------------------t~~l~~~~~~ADIVI 206 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKN--ATVTLTHSR----------------------------TRNLAEVARKADILV 206 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCC--CEEEEECCC----------------------------CCCHHHHHhhCCEEE
Confidence 3689999998 999999999999998 999998211 115777889999999
Q ss_pred EccChhh-HHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~-l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|++... ++. .+++++++||.+.
T Consensus 207 ~avg~~~~v~~------~~ik~GavVIDvg 230 (284)
T PRK14179 207 VAIGRGHFVTK------EFVKEGAVVIDVG 230 (284)
T ss_pred EecCccccCCH------HHccCCcEEEEec
Confidence 9999654 333 2378899998874
No 201
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.49 E-value=0.00058 Score=68.31 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=70.3
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
++..+++|||+|..+..-+..+...-.-.+|.+|+|++++.+.+.+.-.. ....+.+.++.++++++||+|+
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIV~ 197 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA--------LGFAVNTTLDAAEVAHAANLIV 197 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--------cCCcEEEECCHHHHhcCCCEEE
Confidence 34679999999999999988887642126899999999988877653110 0114566788999999999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|+++.. .+++ ...+++++.|+.+.
T Consensus 198 taT~s~~--P~~~--~~~l~~G~hi~~iG 222 (315)
T PRK06823 198 TTTPSRE--PLLQ--AEDIQPGTHITAVG 222 (315)
T ss_pred EecCCCC--ceeC--HHHcCCCcEEEecC
Confidence 9999654 2221 24567888877653
No 202
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.49 E-value=0.0006 Score=70.14 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=67.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.+|+.|||+|-||...|.+|..+|. .+|++.+|+.++++++.+.-. . .+...+++.+.+.++|+||.|
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~-~----------~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG-A----------EAVALEELLEALAEADVVISS 245 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC-C----------eeecHHHHHHhhhhCCEEEEe
Confidence 4689999999999999999999985 799999999999998887521 1 122234666778999999999
Q ss_pred cChhh---HHHHHHHhhhcCCCCCeEEEecc
Q 014700 207 MPVQF---SSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 207 Vp~~~---l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+.+.. ..+.++..... ++..++|++..
T Consensus 246 Tsa~~~ii~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 246 TSAPHPIITREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred cCCCccccCHHHHHHHHhc-ccCeEEEEecC
Confidence 87532 22333333221 12246777754
No 203
>PRK06046 alanine dehydrogenase; Validated
Probab=97.48 E-value=0.00048 Score=69.18 Aligned_cols=96 Identities=13% Similarity=0.197 Sum_probs=67.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
+..+|+|||+|.+|...+..|.....-..|.+|+|++++.+++.+.-.. .++..+...++.+++++ +|+|++
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~l~-aDiVv~ 199 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSS-------VVGCDVTVAEDIEEACD-CDILVT 199 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHh-------hcCceEEEeCCHHHHhh-CCEEEE
Confidence 3579999999999999999987542125888999999888777653110 01123456678888886 999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|+|+.. .+++ ...+++++.|.++.
T Consensus 200 aTps~~--P~~~--~~~l~~g~hV~~iG 223 (326)
T PRK06046 200 TTPSRK--PVVK--AEWIKEGTHINAIG 223 (326)
T ss_pred ecCCCC--cEec--HHHcCCCCEEEecC
Confidence 999753 2221 23467888876653
No 204
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.46 E-value=0.00039 Score=65.06 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
..||+|+|+|.||+.+|..|++.|. .+++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 5799999999999999999999993 379999988
No 205
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.43 E-value=0.0018 Score=62.89 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC-CCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYC 203 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~-~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiV 203 (420)
.+||+|||+|+||..++..|.+.+. ++++. +++|+++..+.+... +.+.+|+++. ...+|+|
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~---------------~~~~~~l~~ll~~~~DlV 66 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR---------------VALLDGLPGLLAWRPDLV 66 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc---------------CcccCCHHHHhhcCCCEE
Confidence 4799999999999999999976421 14444 567777666555432 2345688885 5789999
Q ss_pred EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
+-|-....+++....+.. .+.-++.++-|-
T Consensus 67 VE~A~~~av~e~~~~iL~---~g~dlvv~SvGA 96 (267)
T PRK13301 67 VEAAGQQAIAEHAEGCLT---AGLDMIICSAGA 96 (267)
T ss_pred EECCCHHHHHHHHHHHHh---cCCCEEEEChhH
Confidence 999999999988877755 344444444443
No 206
>PRK04148 hypothetical protein; Provisional
Probab=97.42 E-value=0.00084 Score=58.72 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=70.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.+||.+||+| .|..+|..|++.| ++|+..|.+++.++.+++.+.+.. ..+. +..++ +.-+++|+|.-.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~~~~v-~dDl-------f~p~~-~~y~~a~liysi 84 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLGLNAF-VDDL-------FNPNL-EIYKNAKLIYSI 84 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhCCeEE-ECcC-------CCCCH-HHHhcCCEEEEe
Confidence 4799999999 9999999999988 999999999998888877653211 0010 01133 346789999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
=|...+..-+-+++..+.-+.+|..++
T Consensus 85 rpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 85 RPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 998887777778887776665565554
No 207
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.41 E-value=0.00041 Score=70.90 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
..+|.|||+|.+|...+..|...| .+|++++|++++.+.+........+ . ...-..++.+.+.++|+||.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~~v~-----~--~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGGRIH-----T--RYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCceeE-----e--ccCCHHHHHHHHccCCEEEEc
Confidence 457999999999999999999988 7899999999887776553211000 0 000012455677899999999
Q ss_pred cCh--hhHHH-HHHHhhhcCCCCCeEEEec
Q 014700 207 MPV--QFSSS-FLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 207 Vp~--~~l~~-vl~~i~~~l~~~~iVVs~s 233 (420)
++. ..... +.++....++++.+||++.
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 742 11111 1133344467788888765
No 208
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0009 Score=67.17 Aligned_cols=97 Identities=19% Similarity=0.336 Sum_probs=71.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
+...++|||+|..+..-...+..--.-.+|.+|+|+++..+++.+.-.. .++..+.+.++.++++++||+|+.
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~~~v~a~~s~~~av~~aDiIvt 201 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGGEAVGAADSAEEAVEGADIVVT 201 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcCccceeccCHHHHhhcCCEEEE
Confidence 4578999999999999999887642125899999999988777643110 011245777899999999999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|+|+.. .+++ ..++++++.|..+.
T Consensus 202 ~T~s~~--Pil~--~~~l~~G~hI~aiG 225 (330)
T COG2423 202 ATPSTE--PVLK--AEWLKPGTHINAIG 225 (330)
T ss_pred ecCCCC--Ceec--HhhcCCCcEEEecC
Confidence 999876 2222 35677888876654
No 209
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.40 E-value=0.002 Score=65.29 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=63.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcEEE
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL 204 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDiVI 204 (420)
|||+|||+ |.+|..+.+.|.+.- .+++. ++++++...+.+.+.... +.+. ...... .+.++...++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP-~~el~~l~~s~~sagk~~~~~~~~---l~~~---~~~~~~~~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHP-EVEITYLVSSRESAGKPVSEVHPH---LRGL---VDLNLEPIDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC-CceEEEEeccchhcCCChHHhCcc---cccc---CCceeecCCHHHhhcCCCEEE
Confidence 69999998 999999999999762 36777 446544222223322110 0110 011111 14555556899999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
+|+|.....++...+.. .+..||+++..+
T Consensus 74 ~alP~~~s~~~~~~~~~---~G~~VIDlS~~f 102 (346)
T TIGR01850 74 LALPHGVSAELAPELLA---AGVKVIDLSADF 102 (346)
T ss_pred ECCCchHHHHHHHHHHh---CCCEEEeCChhh
Confidence 99999888887777654 578899988644
No 210
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.39 E-value=0.00047 Score=62.72 Aligned_cols=73 Identities=26% Similarity=0.291 Sum_probs=56.0
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGam-G~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.+||.|||+|.| |..+|..|.+.| .+|++.+|+.+ ++.+.+.++|+||.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g--~~V~v~~r~~~----------------------------~l~~~l~~aDiVIs 93 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRN--ATVTVCHSKTK----------------------------NLKEHTKQADIVIV 93 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCC--CEEEEEECCch----------------------------hHHHHHhhCCEEEE
Confidence 579999999997 888999999988 78999998632 34556889999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
|++...+ +-. ..++++.++|++..
T Consensus 94 at~~~~i--i~~---~~~~~~~viIDla~ 117 (168)
T cd01080 94 AVGKPGL--VKG---DMVKPGAVVIDVGI 117 (168)
T ss_pred cCCCCce--ecH---HHccCCeEEEEccC
Confidence 9997542 111 23556788888753
No 211
>PRK05086 malate dehydrogenase; Provisional
Probab=97.39 E-value=0.00083 Score=67.10 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=63.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE--eCCHHHhccCCcEE
Q 014700 128 NKVVVLGG-GSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYC 203 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a--~td~~eal~~aDiV 203 (420)
|||+|||+ |.+|.+++..|.. .+..+++.++++++.. + +... .+........+.. .+++.++++++|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~-----g~al-Dl~~~~~~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-P-----GVAV-DLSHIPTAVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-c-----ceeh-hhhcCCCCceEEEeCCCCHHHHcCCCCEE
Confidence 79999999 9999999998855 3334789999987531 1 1000 0111000012232 34656678999999
Q ss_pred EEccCh--h--------------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 204 LHAMPV--Q--------------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 204 IlaVp~--~--------------~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
|+|.-. . .++++++.+.++ .++.+|+..+|..+
T Consensus 74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 998642 1 244455555555 46778888888554
No 212
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.39 E-value=0.00063 Score=67.06 Aligned_cols=76 Identities=30% Similarity=0.432 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|.|||+|.+|.+++..|+..|. .+|++++|+.++++.+.+.-.. . .+. ..+....+..+.+.++|+||-|
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~-~-~~~----~~~~~~~~~~~~~~~aDiVIna 199 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNA-R-FPA----ARATAGSDLAAALAAADGLVHA 199 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHh-h-CCC----eEEEeccchHhhhCCCCEEEEC
Confidence 4799999999999999999999883 4899999999988887653100 0 000 0122233445567889999999
Q ss_pred cCh
Q 014700 207 MPV 209 (420)
Q Consensus 207 Vp~ 209 (420)
+|.
T Consensus 200 Tp~ 202 (284)
T PRK12549 200 TPT 202 (284)
T ss_pred CcC
Confidence 985
No 213
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.39 E-value=0.00052 Score=71.15 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.+||.|||+|.||..++..|+..|. .++++++|+.++++.+.+..... .+...+++.+.+.++|+||.|
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~~----------~~~~~~~l~~~l~~aDiVI~a 249 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRNA----------SAHYLSELPQLIKKADIIIAA 249 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcCC----------eEecHHHHHHHhccCCEEEEC
Confidence 4799999999999999999999873 58999999999888887642100 122234566778899999999
Q ss_pred cChhh
Q 014700 207 MPVQF 211 (420)
Q Consensus 207 Vp~~~ 211 (420)
+++..
T Consensus 250 T~a~~ 254 (414)
T PRK13940 250 VNVLE 254 (414)
T ss_pred cCCCC
Confidence 98643
No 214
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.38 E-value=0.0018 Score=73.75 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=60.4
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCe-------------EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-e
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLK-------------VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-T 190 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~-------------V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~ 190 (420)
..++||+|||+|.||...+..|++.. +.+ |++.|++.+.++++.+...+.. .+.. .
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~-~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~---------~v~lDv 636 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVK-TISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE---------AVQLDV 636 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCc-CccccccccccccccEEEEECCCHHHHHHHHHhcCCCc---------eEEeec
Confidence 45789999999999999999999864 233 8899999988887766421110 1233 3
Q ss_pred CCHHHh---ccCCcEEEEccChhhHHHHHHHh
Q 014700 191 TDAKTA---LLGADYCLHAMPVQFSSSFLEGI 219 (420)
Q Consensus 191 td~~ea---l~~aDiVIlaVp~~~l~~vl~~i 219 (420)
+|.++. ++++|+||.|+|......+++..
T Consensus 637 ~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 637 SDSESLLKYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred CCHHHHHHhhcCCCEEEECCCchhhHHHHHHH
Confidence 455544 36799999999987666655443
No 215
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.37 E-value=0.0009 Score=67.22 Aligned_cols=95 Identities=20% Similarity=0.349 Sum_probs=67.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
...+++|||+|.+|.+.+..|.. .+. .+|++|+|++++.+.+.+.-.. . +...+...+++++++.++|+|+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i-~~v~V~~R~~~~a~~~a~~~~~-~------~g~~v~~~~~~~~av~~aDiVv 199 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDI-RSARIWARDSAKAEALALQLSS-L------LGIDVTAATDPRAAMSGADIIV 199 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCc-cEEEEECCCHHHHHHHHHHHHh-h------cCceEEEeCCHHHHhccCCEEE
Confidence 35689999999999999999974 332 5799999999988877653110 0 0113455678889899999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+|+.. .++. ...+++++.|..+
T Consensus 200 taT~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 200 TTTPSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred EecCCCC--cEec--HHHcCCCcEEEee
Confidence 9999743 1221 2345677776644
No 216
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.35 E-value=0.00092 Score=67.12 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=69.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEEeCCH--HHHHHHHHhcCCCCCCCCC--CCCCceEEeCCHHHhc
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDP--AVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTAL 197 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~~r~~--~~~~~i~~~g~~~~~l~~~--~l~~~i~a~td~~eal 197 (420)
.||+|||+ |.+|+.+|..|+..+.-. ++.++|+++ +.++ +.. ..+.+. .+.....+.++..+++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~-----g~~-~Dl~d~~~~~~~~~~i~~~~~~~~ 74 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALE-----GVV-MELQDCAFPLLKGVVITTDPEEAF 74 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccc-----eee-eehhhhcccccCCcEEecChHHHh
Confidence 38999999 999999999999766312 599999976 3221 110 011111 0111233444556779
Q ss_pred cCCcEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700 198 LGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR 253 (420)
Q Consensus 198 ~~aDiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg 253 (420)
++||+||++--. . .++++..+|.++.+++.++|.++|-++ .+...+.+..|
T Consensus 75 ~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD-----~~t~~~~k~sg 141 (323)
T cd00704 75 KDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN-----TNALIALKNAP 141 (323)
T ss_pred CCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH-----HHHHHHHHHcC
Confidence 999999986421 1 255566667666546777777777543 33344455544
No 217
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.34 E-value=0.0007 Score=68.02 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=66.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCC-----CCeEEEEeCCHHHHHHHHHhcCCCCCCCCC--CCCCceEEeCCHHHhcc
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPAVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTALL 198 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~-----~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~--~l~~~i~a~td~~eal~ 198 (420)
..||+|+|+ |.+|+.++..|...+. +.+|.++|+++.. +.+. +... .+.+. .+...+....++.++++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~--g~~~-Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALE--GVVM-ELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-cccc--ceee-ehhhccccccCCceecCCHHHHhC
Confidence 358999999 9999999999988552 1489999996531 1111 1110 11110 11123444567667789
Q ss_pred CCcEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 199 GADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 199 ~aDiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
+||+||++--. . .++++.+.+..+.+++.++|.++|-+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA 131 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH
Confidence 99999986421 1 13555566777765677787788744
No 218
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.33 E-value=0.0022 Score=63.54 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=61.0
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc----
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTAL---- 197 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal---- 197 (420)
+..+||+|||+|.+|+.+...+.+.. +.++. +++++++.. +..++.|.. ...++.++.+
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~-~velvAVvdid~es~gla~A~~~Gi~-------------~~~~~ie~LL~~~~ 67 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSE-HLEPGAMVGIDPESDGLARARRLGVA-------------TSAEGIDGLLAMPE 67 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCC-CcEEEEEEeCChhhHHHHHHHHcCCC-------------cccCCHHHHHhCcC
Confidence 34579999999999999888887653 25666 567877532 222322211 1123566655
Q ss_pred -cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 198 -LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 198 -~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
++.|+||++++.....+......+ .++.+|+.+
T Consensus 68 ~~dIDiVf~AT~a~~H~e~a~~a~e---aGk~VID~s 101 (302)
T PRK08300 68 FDDIDIVFDATSAGAHVRHAAKLRE---AGIRAIDLT 101 (302)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHH---cCCeEEECC
Confidence 468999999999887777666544 467777654
No 219
>PLN00106 malate dehydrogenase
Probab=97.32 E-value=0.0011 Score=66.60 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=65.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEE---eCCHHHhccCC
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGA 200 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a---~td~~eal~~a 200 (420)
..||+|||+ |.+|+.+|..|+..+...++.++|+++... ..+... . ....+.. .+|+.++++++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~--~--------~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHI--N--------TPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhC--C--------cCceEEEEeCCCCHHHHcCCC
Confidence 469999999 999999999999776445899999876111 111110 0 0112332 33456779999
Q ss_pred cEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 201 DYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 201 DiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
|+||++--. . .++++++.+.++- ++.+|+..+|-.+
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD 139 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVN 139 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence 999986421 1 2344555555553 6778888888665
No 220
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.32 E-value=0.0027 Score=65.16 Aligned_cols=124 Identities=12% Similarity=0.112 Sum_probs=73.2
Q ss_pred eccccccccccc-hhh---cCCCeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEE--eCCHHHHHHHHHhcCCCCC
Q 014700 110 RWSRTWRSKAKT-DIL---ERTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYML--MRDPAVCQSINEKHCNCRY 177 (420)
Q Consensus 110 ~~~~~~~~~~~~-~~~---~~~mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~--~r~~~~~~~i~~~g~~~~~ 177 (420)
.+-.|+..++.. +.. ....||+|||+ |.+|+++|..|+..+.-. .+.++ |++++.++-..-.-.+.-
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a- 101 (387)
T TIGR01757 23 VFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSL- 101 (387)
T ss_pred EEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhh-
Confidence 355555555522 222 22469999999 999999999999877411 34445 777665432221100000
Q ss_pred CCCCCCCCceEEeCCHHHhccCCcEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 178 FPEQKLPENVIATTDAKTALLGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 178 l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
..+..++.++++..+.+++||+||++--. . .++++.+.|.++.+++.+||.++|.++
T Consensus 102 ---~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD 174 (387)
T TIGR01757 102 ---YPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN 174 (387)
T ss_pred ---hhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH
Confidence 01112355444445668999999996421 1 245566667776667888888887543
No 221
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.30 E-value=0.003 Score=63.85 Aligned_cols=100 Identities=21% Similarity=0.208 Sum_probs=63.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHHh-cCCCCC--CCCCC--C-CCceEEeCCHHHhccC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEK-HCNCRY--FPEQK--L-PENVIATTDAKTALLG 199 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~~-g~~~~~--l~~~~--l-~~~i~a~td~~eal~~ 199 (420)
|+||+|+|+|.||..++..+.+.. +.+|.. .+++++....+.+. |.. .| ++... + ...+.+..++++.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~-d~eLvav~d~~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP-DMELVGVAKTKPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC-CcEEEEEECCChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCChhHhhcc
Confidence 479999999999999999988753 367764 45566555544432 221 11 11100 1 1245666677777788
Q ss_pred CcEEEEccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS 231 (420)
Q Consensus 200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs 231 (420)
+|+||.|+|.....+..+.... .++.+|.
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~---aGk~VI~ 107 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEK---AGVKAIF 107 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHH---CCCEEEE
Confidence 9999999998877666654433 3444443
No 222
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.29 E-value=0.0012 Score=64.45 Aligned_cols=95 Identities=14% Similarity=0.215 Sum_probs=62.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|.|+|+|.+|.+++..|++.| ++|++++|++++.+.+.+.-.. .+ .+...+..+....++|+||.|
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g--~~v~v~~R~~~~~~~la~~~~~---~~------~~~~~~~~~~~~~~~DivIna 185 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKAD--CNVIIANRTVSKAEELAERFQR---YG------EIQAFSMDELPLHRVDLIINA 185 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhh---cC------ceEEechhhhcccCccEEEEC
Confidence 578999999999999999999988 8999999998887776653110 00 112221112224579999999
Q ss_pred cChhh---HHHHHHHhhhcCCCCCeEEEec
Q 014700 207 MPVQF---SSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 207 Vp~~~---l~~vl~~i~~~l~~~~iVVs~s 233 (420)
+|... ..+.. -....++++.+++.+.
T Consensus 186 tp~gm~~~~~~~~-~~~~~l~~~~~v~D~~ 214 (270)
T TIGR00507 186 TSAGMSGNIDEPP-VPAEKLKEGMVVYDMV 214 (270)
T ss_pred CCCCCCCCCCCCC-CCHHHcCCCCEEEEec
Confidence 99642 21110 0123356777888875
No 223
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.29 E-value=0.00097 Score=61.61 Aligned_cols=96 Identities=27% Similarity=0.333 Sum_probs=62.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE--eCC---HHHhccCC
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTD---AKTALLGA 200 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a--~td---~~eal~~a 200 (420)
.+++.|+|+ |.+|..++..|++.| ++|++++|+.++.+.+.+.- ...+ +. .+.. ..+ ..+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g--~~V~l~~R~~~~~~~l~~~l-~~~~--~~----~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG--ARVVLVGRDLERAQKAADSL-RARF--GE----GVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHH-Hhhc--CC----cEEEeeCCCHHHHHHHHhcC
Confidence 479999996 999999999999988 89999999988877665431 0000 00 1111 122 23567899
Q ss_pred cEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|+||.++|.... .........+++.+++++.
T Consensus 99 diVi~at~~g~~--~~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 99 DVVFAAGAAGVE--LLEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CEEEECCCCCce--echhhhcccCceeEEEEcc
Confidence 999999996543 1111122233456777764
No 224
>PRK11579 putative oxidoreductase; Provisional
Probab=97.29 E-value=0.0021 Score=64.82 Aligned_cols=93 Identities=14% Similarity=0.208 Sum_probs=61.2
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700 126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (420)
Q Consensus 126 ~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD 201 (420)
.++||+|||+|.||.. .+..+.+.. +.++. ++++++++.. +.. + ...+++|+++.+. +.|
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~~~-~~~l~av~d~~~~~~~---~~~------~------~~~~~~~~~ell~~~~vD 66 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAGTP-GLELAAVSSSDATKVK---ADW------P------TVTVVSEPQHLFNDPNID 66 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCC-CCEEEEEECCCHHHHH---hhC------C------CCceeCCHHHHhcCCCCC
Confidence 3579999999999974 556665542 26766 6788876432 211 0 1245678998875 579
Q ss_pred EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
+|++|+|.....+++..... .++.|+ +-|.+..
T Consensus 67 ~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~ 99 (346)
T PRK11579 67 LIVIPTPNDTHFPLAKAALE---AGKHVV-VDKPFTV 99 (346)
T ss_pred EEEEcCCcHHHHHHHHHHHH---CCCeEE-EeCCCCC
Confidence 99999998877666655443 455554 4565543
No 225
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.27 E-value=0.0015 Score=65.02 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=68.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
+..+++|||+|..|..-+..+..--.-.+|.+|+|++++.+++.+.-.. .+...+.+.+++++++.+||+|+.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~-------~~~~~v~~~~~~~eav~~aDIV~t 188 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK-------EFGVDIRPVDNAEAALRDADTITS 188 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH-------hcCCcEEEeCCHHHHHhcCCEEEE
Confidence 4579999999999999988887642125899999999988877653210 011235677899999999999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
|+++.. .+++ ..++++++.|..+
T Consensus 189 aT~s~~--P~~~--~~~l~pg~hV~ai 211 (301)
T PRK06407 189 ITNSDT--PIFN--RKYLGDEYHVNLA 211 (301)
T ss_pred ecCCCC--cEec--HHHcCCCceEEec
Confidence 999753 2221 2356677766554
No 226
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.27 E-value=0.0013 Score=65.53 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=67.1
Q ss_pred CCCeEEEEcccHHH-HHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--Cc
Q 014700 126 RTNKVVVLGGGSFG-TAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD 201 (420)
Q Consensus 126 ~~mkI~IIGaGamG-~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aD 201 (420)
.++||||||+|.++ ...+..+.+.+.. .-|-++++++++++.+.+.... + ...+|.++++.+ .|
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~---------~---~~~~~~~~ll~~~~iD 69 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI---------A---KAYTDLEELLADPDID 69 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC---------C---cccCCHHHHhcCCCCC
Confidence 36899999998555 5688888776511 2456789999998888775311 1 456788888775 69
Q ss_pred EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
+|++|+|.....+++... +..++.|+ +-|.+..
T Consensus 70 ~V~Iatp~~~H~e~~~~A---L~aGkhVl-~EKPla~ 102 (342)
T COG0673 70 AVYIATPNALHAELALAA---LEAGKHVL-CEKPLAL 102 (342)
T ss_pred EEEEcCCChhhHHHHHHH---HhcCCEEE-EcCCCCC
Confidence 999999988877666433 33455554 5676654
No 227
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.27 E-value=0.00071 Score=67.68 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=48.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
++||+|||+|+||...+..+.++. +.++. +++|++.. .+.+ .. ++..+.+.++.+.++|+|++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~p-d~ELVgV~dr~~~~--~~~~-~~------------~v~~~~d~~e~l~~iDVViI 66 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQP-DMELVGVFSRRGAE--TLDT-ET------------PVYAVADDEKHLDDVDVLIL 66 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCC-CcEEEEEEcCCcHH--HHhh-cC------------CccccCCHHHhccCCCEEEE
Confidence 479999999999999999998763 36776 56887521 2221 11 12233466666788999999
Q ss_pred ccChhh
Q 014700 206 AMPVQF 211 (420)
Q Consensus 206 aVp~~~ 211 (420)
|+|+..
T Consensus 67 ctPs~t 72 (324)
T TIGR01921 67 CMGSAT 72 (324)
T ss_pred cCCCcc
Confidence 999644
No 228
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.021 Score=56.59 Aligned_cols=232 Identities=15% Similarity=0.170 Sum_probs=135.4
Q ss_pred hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC--CCCCCCCC-----CCCCceE---EeCCH
Q 014700 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC--NCRYFPEQ-----KLPENVI---ATTDA 193 (420)
Q Consensus 124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~--~~~~l~~~-----~l~~~i~---a~td~ 193 (420)
|++|.++.++|+|.+.--+|.-|...| +..+-+++|..-+-+++.+.-. ...++.+. .+...+. ...++
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~ 79 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDL 79 (431)
T ss_pred CCcccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhH
Confidence 456789999999999999999999987 4788888876544444433211 01122111 1122221 23578
Q ss_pred HHhccCCcEEEEccChhhHHHHHHHhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE---------
Q 014700 194 KTALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS--------- 263 (420)
Q Consensus 194 ~eal~~aDiVIlaVp~~~l~~vl~~i~-~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~--------- 263 (420)
+++..+-+-+|+|||.++..+++++|- ..++.-+.+|.++..++... .+...+ ...|. ++.+++
T Consensus 80 a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~m-nk~~~---daeViS~SsY~~dTk 153 (431)
T COG4408 80 AQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLM-NKAGR---DAEVISLSSYYADTK 153 (431)
T ss_pred HHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHH-hhhCC---CceEEEeehhcccce
Confidence 888889999999999999999999983 44554445555555455431 222222 22232 122221
Q ss_pred -----CcccHHHHhhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHH--------HHHHHHHHH
Q 014700 264 -----GPSFALELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALK--------NVLAIAAGI 328 (420)
Q Consensus 264 -----GP~~a~ev~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alk--------Nv~Ai~~G~ 328 (420)
-|+++-..+-. ..+.+++ .+...++++..+|...|+.+.+.+....+|-...-. |=+++.+-.
T Consensus 154 ~id~~~p~~alTkavK--kriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif 231 (431)
T COG4408 154 YIDAEQPNRALTKAVK--KRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIF 231 (431)
T ss_pred eecccCcchHHHHHHh--HheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHh
Confidence 14443322211 2245554 356778999999999999999988877766543222 112222211
Q ss_pred H-Hhc-----c---cch--hHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 014700 329 V-VGM-----N---LGN--NSMAALVAQGCSEIRWLATKMGAKPATI 364 (420)
Q Consensus 329 ~-~gl-----~---lg~--N~~~al~~~~~~E~~~lA~a~Gi~~~t~ 364 (420)
. ++. | -|. .....-+...-.|+.++..++|+++-.+
T Consensus 232 ~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNL 278 (431)
T COG4408 232 YPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINL 278 (431)
T ss_pred CCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhH
Confidence 1 111 1 121 1222334556689999999999875433
No 229
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.25 E-value=0.0012 Score=59.57 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=55.0
Q ss_pred EEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccC
Q 014700 130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP 208 (420)
Q Consensus 130 I~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp 208 (420)
|.|+|+ |.+|..++..|.+.| ++|+++.|++++.+. ..+. ....+. +.-.++..++++++|.||.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~~--~~~~--~~~~~d-----~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSKAED--SPGV--EIIQGD-----LFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGHHH--CTTE--EEEESC-----TTCHHHHHHHHTTSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchhccc--cccc--ccceee-----ehhhhhhhhhhhhcchhhhhhh
Confidence 789997 999999999999998 999999999987665 2221 111000 0000234567889999999998
Q ss_pred h-----hhHHHHHHHhhh
Q 014700 209 V-----QFSSSFLEGISD 221 (420)
Q Consensus 209 ~-----~~l~~vl~~i~~ 221 (420)
. ...+.+++.+..
T Consensus 70 ~~~~~~~~~~~~~~a~~~ 87 (183)
T PF13460_consen 70 PPPKDVDAAKNIIEAAKK 87 (183)
T ss_dssp STTTHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccc
Confidence 3 334555554433
No 230
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0041 Score=62.29 Aligned_cols=101 Identities=21% Similarity=0.332 Sum_probs=64.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVI 204 (420)
|+||+|+|+ |.-|.-+.+.|+..- +.++.++..++..-+.+.+.+.+...+.+ ++ +... |+++. ..+||+||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp-~ve~~~~ss~~~~g~~~~~~~p~l~g~~~--l~--~~~~-~~~~~~~~~~DvvF 75 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHP-DVELILISSRERAGKPVSDVHPNLRGLVD--LP--FQTI-DPEKIELDECDVVF 75 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCC-CeEEEEeechhhcCCchHHhCcccccccc--cc--cccC-ChhhhhcccCCEEE
Confidence 789999996 999999999999874 46766665544333444444433321111 11 1111 33332 45699999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
+|+|...-.+++.++.. .+..||+++.-.
T Consensus 76 lalPhg~s~~~v~~l~~---~g~~VIDLSadf 104 (349)
T COG0002 76 LALPHGVSAELVPELLE---AGCKVIDLSADF 104 (349)
T ss_pred EecCchhHHHHHHHHHh---CCCeEEECCccc
Confidence 99998887776666543 456688887533
No 231
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.23 E-value=0.0022 Score=66.94 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=71.6
Q ss_pred CeEEEEcccHH-HHHHHHHHHhc--CC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700 128 NKVVVLGGGSF-GTAMAAHVANK--KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (420)
Q Consensus 128 mkI~IIGaGam-G~alA~~La~a--G~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV 203 (420)
|||+|||+|.. +--+...|... .. ..+|.++|.++++.+.+.+.-. ++......+-.+..++|.++|+++||+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~--~~~~~~g~~~~v~~Ttdr~eAl~gADfV 78 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK--ILFKENYPEIKFVYTTDPEEAFTDADFV 78 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhhCCCeEEEEECCHHHHhCCCCEE
Confidence 79999999985 11122333332 11 2689999999987655432110 0111111233678899999999999999
Q ss_pred EEccChh------------------------------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700 204 LHAMPVQ------------------------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI 247 (420)
Q Consensus 204 IlaVp~~------------------------------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~ 247 (420)
|.++-.. .+.++++.+..+. ++..+|+.+|.++ .+++.
T Consensus 79 i~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~-----~vt~~ 152 (437)
T cd05298 79 FAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAA-----IVAEA 152 (437)
T ss_pred EEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHH
Confidence 9875321 2344555555543 6888888888654 34455
Q ss_pred HHHHh
Q 014700 248 IPQAL 252 (420)
Q Consensus 248 l~~~l 252 (420)
+.+.+
T Consensus 153 ~~~~~ 157 (437)
T cd05298 153 LRRLF 157 (437)
T ss_pred HHHHC
Confidence 55544
No 232
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.21 E-value=0.0034 Score=56.41 Aligned_cols=79 Identities=14% Similarity=0.215 Sum_probs=53.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|.|||+|.+|...+..|.+.| ++|++++.+ ..+++.+.+ ...+.. ... ..++ +.++|+||.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp~--~~~~l~~l~-------~i~~~~--~~~-~~~d-l~~a~lViaa 77 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSPE--ICKEMKELP-------YITWKQ--KTF-SNDD-IKDAHLIYAA 77 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCc--cCHHHHhcc-------CcEEEe--ccc-Chhc-CCCceEEEEC
Confidence 579999999999999999999998 899999643 334444321 000000 001 1222 6789999999
Q ss_pred cChhhHHHHHHHhh
Q 014700 207 MPVQFSSSFLEGIS 220 (420)
Q Consensus 207 Vp~~~l~~vl~~i~ 220 (420)
+....+...+.+..
T Consensus 78 T~d~e~N~~i~~~a 91 (157)
T PRK06719 78 TNQHAVNMMVKQAA 91 (157)
T ss_pred CCCHHHHHHHHHHH
Confidence 99887666665544
No 233
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.16 E-value=0.0025 Score=53.44 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=59.5
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEEccC
Q 014700 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHAMP 208 (420)
Q Consensus 130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIlaVp 208 (420)
|.|+|.|.+|..++..|.+.+ .+|++++++++.++.+.+.+....+ ++..-+ ..++++ +.++|.++++++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~~~~i~-gd~~~~------~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELREEGVEVIY-GDATDP------EVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTSEEEE-S-TTSH------HHHHHTTGGCESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhccccccc-ccchhh------hHHhhcCccccCEEEEccC
Confidence 679999999999999999965 6999999999999999887632111 110000 012222 568999999999
Q ss_pred hhhHH-HHHHHhhhcCCCCCeEEEe
Q 014700 209 VQFSS-SFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 209 ~~~l~-~vl~~i~~~l~~~~iVVs~ 232 (420)
.+..- .++..+.... +...++..
T Consensus 72 ~d~~n~~~~~~~r~~~-~~~~ii~~ 95 (116)
T PF02254_consen 72 DDEENLLIALLARELN-PDIRIIAR 95 (116)
T ss_dssp SHHHHHHHHHHHHHHT-TTSEEEEE
T ss_pred CHHHHHHHHHHHHHHC-CCCeEEEE
Confidence 76533 3333444433 33444433
No 234
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.15 E-value=0.0023 Score=64.64 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
...||.|||+|.+|+.+|..|+++|. .+++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 35799999999999999999999993 3899999874
No 235
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.13 E-value=0.0011 Score=67.69 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=52.1
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEE-eCC---HHHhccCCcE
Q 014700 130 VVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIA-TTD---AKTALLGADY 202 (420)
Q Consensus 130 I~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a-~td---~~eal~~aDi 202 (420)
|.|||+|.+|..++..|++.+ ++ +|++.+|+.++++++.+. +..... +.+ ..| +++.++++|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~~~~~~~---------~~~d~~~~~~l~~~~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLLGDRVEA---------VQVDVNDPESLAELLRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--TTTTEEE---------EE--TTTHHHHHHHHTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhccccceeE---------EEEecCCHHHHHHHHhcCCE
Confidence 789999999999999999986 34 899999999998887753 111110 011 122 4567889999
Q ss_pred EEEccChhhHHHHH
Q 014700 203 CLHAMPVQFSSSFL 216 (420)
Q Consensus 203 VIlaVp~~~l~~vl 216 (420)
||-|++......++
T Consensus 71 Vin~~gp~~~~~v~ 84 (386)
T PF03435_consen 71 VINCAGPFFGEPVA 84 (386)
T ss_dssp EEE-SSGGGHHHHH
T ss_pred EEECCccchhHHHH
Confidence 99999876444444
No 236
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.12 E-value=0.0021 Score=63.86 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=61.9
Q ss_pred EEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh--
Q 014700 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-- 209 (420)
Q Consensus 132 IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-- 209 (420)
|||+|.+|+++|..|+..+...++.++|++++.++-....-.+... .+..++.+..+..+.+++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS----FLPTPKKIRSGDYSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc----ccCCCeEEecCCHHHHCCCCEEEECCCCCC
Confidence 6999999999999999887545799999977543322211000000 0112233333333568999999997532
Q ss_pred --------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 210 --------------QFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 210 --------------~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
..++++.+.+.++ .++.+++.++|-.
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 116 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPV 116 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 1245556666665 4677788888743
No 237
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.11 E-value=0.0018 Score=60.53 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=31.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
...||.|||+|.+|+.+|..|++.|. .+++++|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 35799999999999999999999984 489999987
No 238
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.10 E-value=0.001 Score=70.34 Aligned_cols=71 Identities=15% Similarity=0.310 Sum_probs=53.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++++|+|+|.+|.+++..|++.| ++|++++|+.++++.+.+.. +.. .....+..+ +.++|+||.|
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G--~~V~i~~R~~~~~~~la~~~-~~~----------~~~~~~~~~-l~~~DiVIna 397 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAG--AELLIFNRTKAHAEALASRC-QGK----------AFPLESLPE-LHRIDIIINC 397 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh-ccc----------eechhHhcc-cCCCCEEEEc
Confidence 579999999999999999999998 89999999998887776531 100 000112222 5689999999
Q ss_pred cChhh
Q 014700 207 MPVQF 211 (420)
Q Consensus 207 Vp~~~ 211 (420)
+|...
T Consensus 398 tP~g~ 402 (477)
T PRK09310 398 LPPSV 402 (477)
T ss_pred CCCCC
Confidence 99653
No 239
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.10 E-value=0.00087 Score=61.37 Aligned_cols=70 Identities=16% Similarity=0.294 Sum_probs=49.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|||+|||+ |..|+.+..-..+.| |+|+.+.|++.++... .+.... ..-+.--+.+++.+.+.|+||.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG--HeVTAivRn~~K~~~~--~~~~i~-------q~Difd~~~~a~~l~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG--HEVTAIVRNASKLAAR--QGVTIL-------QKDIFDLTSLASDLAGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC--CeeEEEEeChHhcccc--ccceee-------cccccChhhhHhhhcCCceEEEe
Confidence 79999996 999999999999998 9999999999875443 121110 00111112334568899999998
Q ss_pred cC
Q 014700 207 MP 208 (420)
Q Consensus 207 Vp 208 (420)
.-
T Consensus 70 ~~ 71 (211)
T COG2910 70 FG 71 (211)
T ss_pred cc
Confidence 75
No 240
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.10 E-value=0.0034 Score=63.03 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=68.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCC-----CeEEEEeCCHHHHHHHHHhcCCCCCCCCC--CCCCceEEeCCHHHhccCC
Q 014700 129 KVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDPAVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTALLGA 200 (420)
Q Consensus 129 kI~IIGa-GamG~alA~~La~aG~~-----~~V~l~~r~~~~~~~i~~~g~~~~~l~~~--~l~~~i~a~td~~eal~~a 200 (420)
||+|||+ |.+|+.+|..|...+.- +++.++|+++..- ... +.. ..+.+. .+...+...++..+++++|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~-~a~--g~~-~Dl~d~~~~~~~~~~~~~~~~~~~~~a 76 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK-VLE--GVV-MELMDCAFPLLDGVVPTHDPAVAFTDV 76 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc-ccc--eeE-eehhcccchhcCceeccCChHHHhCCC
Confidence 6999999 99999999999876531 1599999865320 000 100 001111 1112233333545668999
Q ss_pred cEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700 201 DYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN 254 (420)
Q Consensus 201 DiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~ 254 (420)
|+||++--. . .++++.++|.++..++.++|.++|.++ .+...+.+..|.
T Consensus 77 DiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD-----v~t~v~~~~sg~ 141 (324)
T TIGR01758 77 DVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN-----TNALVLSNYAPS 141 (324)
T ss_pred CEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH-----HHHHHHHHHcCC
Confidence 999986421 1 145555666666556778887887543 344455555543
No 241
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.08 E-value=0.0035 Score=65.20 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=62.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH-hccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e-al~~aDiVIl 205 (420)
+++|.|+|+|.+|..++..|.+.| ++|++++++++.++.+.+.+.....+.+. ..-...+++ .+.++|.||+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~--~~v~vid~~~~~~~~~~~~~~~~~~i~gd-----~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG--YSVKLIERDPERAEELAEELPNTLVLHGD-----GTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHCCCCeEEECC-----CCCHHHHHhcCCccCCEEEE
Confidence 689999999999999999999988 89999999999888887753221111000 000001222 2568999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEE
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFI 230 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVV 230 (420)
+++.+...-++..+...+....+++
T Consensus 304 ~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 304 LTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 9987543333333334344444443
No 242
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.05 E-value=0.0036 Score=65.18 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=71.0
Q ss_pred CeEEEEcccHH-HHHHHHHHHhcC--C-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700 128 NKVVVLGGGSF-GTAMAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (420)
Q Consensus 128 mkI~IIGaGam-G~alA~~La~aG--~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV 203 (420)
|||+|||+|.. .--+...|.... . ..+|.++|.++++.+.+.+... ++......+-.+..++|.++|+++||+|
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~--~~~~~~g~~~~v~~ttD~~~Al~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK--RYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 69999999983 222333343321 1 2689999999977654332110 0001111123578899999999999999
Q ss_pred EEccChh------------------------------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700 204 LHAMPVQ------------------------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI 247 (420)
Q Consensus 204 IlaVp~~------------------------------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~ 247 (420)
|..+-.- .+.++++.+..+ .|+.++|..+|.++ .+.+.
T Consensus 79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~-~P~a~lin~TNP~d-----i~t~a 152 (425)
T cd05197 79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKL-SPDAWYLNFTNPAG-----EVTEA 152 (425)
T ss_pred EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHh-CCCcEEEecCChHH-----HHHHH
Confidence 9885321 233455555554 36888998998654 34455
Q ss_pred HHHHh
Q 014700 248 IPQAL 252 (420)
Q Consensus 248 l~~~l 252 (420)
+.+..
T Consensus 153 ~~~~~ 157 (425)
T cd05197 153 VRRYV 157 (425)
T ss_pred HHHhC
Confidence 55544
No 243
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.05 E-value=0.0062 Score=60.02 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=58.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi 202 (420)
+||+|||+|.||..++..+.+.. +.++. +++++++.. +..++.|.. ...++.++.+. +.|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~-~~elvaV~d~d~es~~la~A~~~Gi~-------------~~~~~~e~ll~~~dIDa 67 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSE-HLEMVAMVGIDPESDGLARARELGVK-------------TSAEGVDGLLANPDIDI 67 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCC-CcEEEEEEeCCcccHHHHHHHHCCCC-------------EEECCHHHHhcCCCCCE
Confidence 68999999999998887777543 25666 567777542 222222210 22346666654 5799
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|++++|.....+......+ .++.+++.+
T Consensus 68 V~iaTp~~~H~e~a~~al~---aGk~VIdek 95 (285)
T TIGR03215 68 VFDATSAKAHARHARLLAE---LGKIVIDLT 95 (285)
T ss_pred EEECCCcHHHHHHHHHHHH---cCCEEEECC
Confidence 9999999887776655543 466666543
No 244
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.03 E-value=0.0022 Score=65.85 Aligned_cols=99 Identities=20% Similarity=0.352 Sum_probs=63.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.+|||+|+|+ |..|..+.+.|.+.. +++|+.+.++...-+.+...+... .+.... .+.. .+.++ ++++|+||
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~saG~~i~~~~~~l---~~~~~~-~~~~-~~~~~-~~~~DvVf 109 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKAGQSFGSVFPHL---ITQDLP-NLVA-VKDAD-FSDVDAVF 109 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhcCCCchhhCccc---cCcccc-ceec-CCHHH-hcCCCEEE
Confidence 3679999997 999999999999873 379999887654333333322111 111111 0111 12233 57899999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snG 235 (420)
+|+|.....+++..+ ..+..||+++.-
T Consensus 110 ~Alp~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 110 CCLPHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred EcCCHHHHHHHHHHH----hCCCEEEEcCch
Confidence 999998776666654 346788888753
No 245
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.01 E-value=0.0032 Score=61.78 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=63.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.+++.|+|+|.+|.+++..|+..|. .+|++++|+.++++.+.+..... . .+....+..+.+.++|+||-|
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~---~------~~~~~~~~~~~~~~~DivIna 192 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGAL---G------KAELDLELQEELADFDLIINA 192 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhc---c------ceeecccchhccccCCEEEEC
Confidence 4689999999999999999998873 58999999999888776642110 0 011111334557789999999
Q ss_pred cChhhHHH--HHHHhhhcCCCCCeEEEec
Q 014700 207 MPVQFSSS--FLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 207 Vp~~~l~~--vl~~i~~~l~~~~iVVs~s 233 (420)
+|...... ...-....++++.+++.+.
T Consensus 193 Tp~g~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 193 TSAGMSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 99643210 0000112345566777664
No 246
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.98 E-value=0.0025 Score=62.73 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=54.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe---CCHHHhccCCcEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC 203 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~---td~~eal~~aDiV 203 (420)
.+++.|||+|.+|.+++..|++.|. .+|++++|+.++.+.+.+.... . ..+... .+..+.+.++|+|
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~-~--------~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQ-V--------GVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhh-c--------CcceeccchhhhhhcccCCCEE
Confidence 5689999999999999999999883 4799999999998888764110 0 001111 1233446789999
Q ss_pred EEccChh
Q 014700 204 LHAMPVQ 210 (420)
Q Consensus 204 IlaVp~~ 210 (420)
|-|+|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999963
No 247
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.95 E-value=0.0063 Score=56.99 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=55.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.++|.|||+|.+|...+..|.++| ++|++++++. +.+..+...+. ..+. .-.-.. +.+.++|+||.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~~~~-i~~~---------~~~~~~-~~l~~adlVia 76 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVEEGK-IRWK---------QKEFEP-SDIVDAFLVIA 76 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHhCCC-EEEE---------ecCCCh-hhcCCceEEEE
Confidence 579999999999999999999998 8999998764 22334333221 0000 000012 23678999999
Q ss_pred ccChhhHHHHHHHhh
Q 014700 206 AMPVQFSSSFLEGIS 220 (420)
Q Consensus 206 aVp~~~l~~vl~~i~ 220 (420)
|+.+..+...+.+..
T Consensus 77 aT~d~elN~~i~~~a 91 (202)
T PRK06718 77 ATNDPRVNEQVKEDL 91 (202)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999888766665544
No 248
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.91 E-value=0.0027 Score=62.48 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=57.3
Q ss_pred CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+|||.|. +|..+|..|.+.| ..|+++.+... ++++.+++||+||
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~g--atVtv~~s~t~----------------------------~l~~~~~~ADIVI 206 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKN--ASVTILHSRSK----------------------------DMASYLKDADVIV 206 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCch----------------------------hHHHHHhhCCEEE
Confidence 368999999988 9999999999987 89998876421 4566788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|++...+ +. ..+++++++||++.
T Consensus 207 sAvg~p~~---i~--~~~vk~gavVIDvG 230 (286)
T PRK14175 207 SAVGKPGL---VT--KDVVKEGAVIIDVG 230 (286)
T ss_pred ECCCCCcc---cC--HHHcCCCcEEEEcC
Confidence 99986542 11 13567889998874
No 249
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.90 E-value=0.0037 Score=57.12 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.6
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 68999999999999999999994 4799999875
No 250
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.87 E-value=0.003 Score=63.72 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=60.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
+|||+|+|+ |..|..+.+.|.+.++. .++..+.+++..-+.+. +.+ ..+...+...+.+.++|+||
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~--------~~g----~~i~v~d~~~~~~~~vDvVf 68 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS--------FKG----KELKVEDLTTFDFSGVDIAL 68 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee--------eCC----ceeEEeeCCHHHHcCCCEEE
Confidence 479999996 99999999999997621 24566666543222221 111 01222211112357899999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+|+|.....++..++.. .+..||+++.
T Consensus 69 ~A~g~g~s~~~~~~~~~---~G~~VIDlS~ 95 (334)
T PRK14874 69 FSAGGSVSKKYAPKAAA---AGAVVIDNSS 95 (334)
T ss_pred ECCChHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999888777766543 5678888774
No 251
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.85 E-value=0.0044 Score=66.67 Aligned_cols=96 Identities=13% Similarity=0.246 Sum_probs=63.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEEc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIla 206 (420)
-+|.|+|+|.+|..+|+.|.+.| ++|+++|.|+++++++++.+.... ..+..-+ +.++++ ++++|.++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~~g~~~i-~GD~~~~------~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRERGIRAV-LGNAANE------EIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHCCCeEE-EcCCCCH------HHHHhcCccccCEEEEE
Confidence 47999999999999999999998 999999999999998887543211 1111000 012222 5689999999
Q ss_pred cChhhHH-HHHHHhhhcCCCCCeEEEec
Q 014700 207 MPVQFSS-SFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 207 Vp~~~l~-~vl~~i~~~l~~~~iVVs~s 233 (420)
++++... .++..+... .++..++.-.
T Consensus 489 ~~~~~~~~~iv~~~~~~-~~~~~iiar~ 515 (558)
T PRK10669 489 IPNGYEAGEIVASAREK-RPDIEIIARA 515 (558)
T ss_pred cCChHHHHHHHHHHHHH-CCCCeEEEEE
Confidence 9875432 344444443 3455555444
No 252
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.84 E-value=0.0042 Score=67.52 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=66.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIl 205 (420)
.++|.|+|.|.+|..+++.|.+.| ++++++|.|+++++.+++.|... +.++..-+ +.++++ +++||.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDat~~------~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK--MRITVLERDISAVNLMRKYGYKV-YYGDATQL------ELLRAAGAEKAEAIVI 470 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhCCCeE-EEeeCCCH------HHHHhcCCccCCEEEE
Confidence 468999999999999999999988 89999999999999888765321 11111100 012222 568999999
Q ss_pred ccChhhH-HHHHHHhhhcCCCCCeEEEecc
Q 014700 206 AMPVQFS-SSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 206 aVp~~~l-~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+++++.. ..++..++.+ .|+..|+.-.+
T Consensus 471 ~~~d~~~n~~i~~~~r~~-~p~~~IiaRa~ 499 (601)
T PRK03659 471 TCNEPEDTMKIVELCQQH-FPHLHILARAR 499 (601)
T ss_pred EeCCHHHHHHHHHHHHHH-CCCCeEEEEeC
Confidence 9997653 3444554544 34555554443
No 253
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.81 E-value=0.0054 Score=62.93 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=69.0
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV 203 (420)
++..+++|||+|..+..-...++.-.. -.+|.+|+|++++.+.+.+.-.. .+++. ..+.+.+++++++.+||+|
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~--~~~~~---~~v~~~~s~~eav~~ADIV 227 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAE--TYPQI---TNVEVVDSIEEVVRGSDIV 227 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH--hcCCC---ceEEEeCCHHHHHcCCCEE
Confidence 346799999999999999988876320 15999999999988776653210 01110 1256778999999999999
Q ss_pred EEccChhh----HHHHHHHhhhcCCCCCeEEEe
Q 014700 204 LHAMPVQF----SSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 204 IlaVp~~~----l~~vl~~i~~~l~~~~iVVs~ 232 (420)
+.|+++.. ...+++ ..++++++.|+.+
T Consensus 228 vtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~i 258 (379)
T PRK06199 228 TYCNSGETGDPSTYPYVK--REWVKPGAFLLMP 258 (379)
T ss_pred EEccCCCCCCCCcCcEec--HHHcCCCcEEecC
Confidence 99997522 112221 2456788877643
No 254
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.76 E-value=0.0069 Score=62.97 Aligned_cols=116 Identities=20% Similarity=0.297 Sum_probs=70.2
Q ss_pred CeEEEEcccHHHH-HHHHHHHhcC--C-CCeEEEEeCC-HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 128 NKVVVLGGGSFGT-AMAAHVANKK--S-QLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 128 mkI~IIGaGamG~-alA~~La~aG--~-~~~V~l~~r~-~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
|||+|||+|..-+ .+...|+... . .-+|.++|.+ +++++.+.+... ++......+..+..++|.++++++||+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~--~~~~~~~~~~~v~~t~d~~~al~gadf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK--RMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 7999999999644 2333344321 1 2589999999 776544322110 000111112357889999999999999
Q ss_pred EEEccCh-----h-------------------------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 014700 203 CLHAMPV-----Q-------------------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ 246 (420)
Q Consensus 203 VIlaVp~-----~-------------------------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se 246 (420)
||.+.-. . .+.++++.+.++- |+..+++.+|.++ .+++
T Consensus 79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~-----ivt~ 152 (419)
T cd05296 79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAG-----IVTE 152 (419)
T ss_pred EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHH-----HHHH
Confidence 9987531 1 2334555555543 6888888888554 3445
Q ss_pred HHHHH
Q 014700 247 IIPQA 251 (420)
Q Consensus 247 ~l~~~ 251 (420)
.+.+.
T Consensus 153 a~~k~ 157 (419)
T cd05296 153 AVLRH 157 (419)
T ss_pred HHHHh
Confidence 55544
No 255
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.76 E-value=0.0069 Score=48.56 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=29.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR 160 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r 160 (420)
.++++|+|+|.+|..++..|.+.+ ..+|.+|+|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 579999999999999999999984 278999987
No 256
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.73 E-value=0.024 Score=49.22 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=30.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.+||+|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 3699999999999999999999994 5899999764
No 257
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.72 E-value=0.02 Score=58.04 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=63.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
..||+|||+ .||...+..+.+...+.++. +++++.++++++.+.. ++...+|.++.+.+.|++++
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~-------------gi~~y~~~eell~d~Di~~V 68 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL-------------GVPLYCEVEELPDDIDIACV 68 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh-------------CCCccCCHHHHhcCCCEEEE
Confidence 469999999 68999999887753125655 6789999888887752 12245689998888888888
Q ss_pred ccCh----hhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 206 AMPV----QFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 206 aVp~----~~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
++|+ ....++..... +.|+-|+ +-|-+..
T Consensus 69 ~ipt~~P~~~H~e~a~~aL---~aGkHVL-~EKPla~ 101 (343)
T TIGR01761 69 VVRSAIVGGQGSALARALL---ARGIHVL-QEHPLHP 101 (343)
T ss_pred EeCCCCCCccHHHHHHHHH---hCCCeEE-EcCCCCH
Confidence 8764 34445544433 3455444 4565653
No 258
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.72 E-value=0.0015 Score=60.26 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=48.8
Q ss_pred eEEEEcccHHHHHHHH--HHHhcC-C-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 129 KVVVLGGGSFGTAMAA--HVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 129 kI~IIGaGamG~alA~--~La~aG-~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
||+|||+|..-.+.-. .+.... . ..++.++|+++++++.+.+... ++......+..+..++|.++++++||+||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~--~~~~~~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLAR--RMVEEAGADLKVEATTDRREALEGADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHH--HHHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHH--HHHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence 8999999987665332 233321 1 2489999999987764432110 00111122346788999999999999999
Q ss_pred EccChh
Q 014700 205 HAMPVQ 210 (420)
Q Consensus 205 laVp~~ 210 (420)
.++-.-
T Consensus 79 ~~irvG 84 (183)
T PF02056_consen 79 NQIRVG 84 (183)
T ss_dssp E---TT
T ss_pred EEeeec
Confidence 988753
No 259
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.67 E-value=0.0068 Score=61.22 Aligned_cols=96 Identities=19% Similarity=0.281 Sum_probs=57.6
Q ss_pred hcCCCeEEEEcc-cHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCC
Q 014700 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGA 200 (420)
Q Consensus 124 ~~~~mkI~IIGa-GamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~a 200 (420)
|.+|+||+|+|+ |.+|.-+.+.|.+.++. .++..+. +.+.. |.... +.+. .+.+. .+..+ ++++
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~a------G~~l~-~~~~----~l~~~~~~~~~-~~~v 67 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESA------GHSVP-FAGK----NLRVREVDSFD-FSQV 67 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccC------CCeec-cCCc----ceEEeeCChHH-hcCC
Confidence 345689999997 99999999999976521 2333333 22211 21111 1111 12221 12233 5789
Q ss_pred cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (420)
Q Consensus 201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snG 235 (420)
|++|+|+|......++..+.. .+..||+++.-
T Consensus 68 D~vFla~p~~~s~~~v~~~~~---~G~~VIDlS~~ 99 (336)
T PRK05671 68 QLAFFAAGAAVSRSFAEKARA---AGCSVIDLSGA 99 (336)
T ss_pred CEEEEcCCHHHHHHHHHHHHH---CCCeEEECchh
Confidence 999999997766666655533 46788887743
No 260
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.67 E-value=0.0037 Score=62.02 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=50.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|||.|+|+ |.+|..++..|.++| |+|++.+|+.+....+...+.. ...+ .+.-..++.++++++|+||.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~~~~~l~~~~v~--~v~~-----Dl~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLRKASFLKEWGAE--LVYG-----DLSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChHHhhhHhhcCCE--EEEC-----CCCCHHHHHHHHCCCCEEEEC
Confidence 69999995 999999999999998 9999999987655444332211 1000 011112356678899999987
Q ss_pred cC
Q 014700 207 MP 208 (420)
Q Consensus 207 Vp 208 (420)
+.
T Consensus 72 ~~ 73 (317)
T CHL00194 72 ST 73 (317)
T ss_pred CC
Confidence 65
No 261
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.66 E-value=0.0085 Score=66.03 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=75.8
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------CCCeE--EEECcccHH-HHhh
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQPFI--ALSGPSFAL-ELMN 273 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~------~~~~~--vl~GP~~a~-ev~~ 273 (420)
||+|+|...+.++++++.++++++++|.++.. +- ..+.+.+.+.++.. .|+++ ..+|+..+. ++++
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~S-vK----~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~ 75 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGS-TK----SDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYV 75 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCc-cc----HHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhC
Confidence 68999999999999999999999999877642 21 12223333333210 02221 234444443 4566
Q ss_pred cCCeEEEEec-CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH---HHHHHHHHH
Q 014700 274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAA 326 (420)
Q Consensus 274 g~~t~i~ia~-~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a---lkNv~Ai~~ 326 (420)
+....++... .+.+.++.++++++..|.++...+.-.+++..++ +.|+++.+.
T Consensus 76 ~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l 132 (673)
T PRK11861 76 GRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFAL 132 (673)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHH
Confidence 7665554433 3577889999999999999888766566665444 555655544
No 262
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.66 E-value=0.05 Score=51.03 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=50.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.++|.|||+|.+|..-+..|.+.| .+|++++.+.. .++.+.+.+ +.....+ .-+.. .+.++|+||.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~~~-~i~~~~~---------~~~~~-dl~~~~lVi~ 75 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAEQG-GITWLAR---------CFDAD-ILEGAFLVIA 75 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHHcC-CEEEEeC---------CCCHH-HhCCcEEEEE
Confidence 569999999999999999999998 89999987642 344554433 1111000 00222 3678999999
Q ss_pred ccChhhH
Q 014700 206 AMPVQFS 212 (420)
Q Consensus 206 aVp~~~l 212 (420)
|+....+
T Consensus 76 at~d~~l 82 (205)
T TIGR01470 76 ATDDEEL 82 (205)
T ss_pred CCCCHHH
Confidence 9887643
No 263
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.64 E-value=0.01 Score=62.99 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=65.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC---CCCc-eEEeC-C--------HH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPEN-VIATT-D--------AK 194 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~---l~~~-i~a~t-d--------~~ 194 (420)
.|+.|+|+|.+|...+..+...| ..|+++++++++.+.+++.|.....++... -..+ .+..+ + ..
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 59999999999999999998888 789999999988777766543211111000 0000 11111 1 23
Q ss_pred HhccCCcEEEEcc-----ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 195 TALLGADYCLHAM-----PVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 195 eal~~aDiVIlaV-----p~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
+.++++|+||.++ |...+ +.++....++++.+||+++
T Consensus 243 e~~~~~DIVI~TalipG~~aP~L--it~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKL--ITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCee--ehHHHHhhCCCCCEEEEee
Confidence 4467899999988 43311 2344456677888887765
No 264
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.63 E-value=0.0048 Score=58.25 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=31.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
...+|+|||+|.+|+.+|..|++.|. .+++++|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 45799999999999999999999995 479999987
No 265
>PRK08328 hypothetical protein; Provisional
Probab=96.59 E-value=0.0082 Score=57.38 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=34.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
..||.|||+|..|+.++..|++.|. .+++++|.+.-....++
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~ 68 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQTPELSNLN 68 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCccChhhhc
Confidence 5699999999999999999999995 58999987754444444
No 266
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.56 E-value=0.014 Score=56.56 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=68.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~--~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..||.|+|.|.+|.+.|..+..+|...++.++|.++++++ .+--+|. .-+.-.+++....|.. +-.++++||
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~-----s~f~~~~~V~~~~Dy~-~sa~S~lvI 93 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHG-----SAFLSTPNVVASKDYS-VSANSKLVI 93 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccc-----cccccCCceEecCccc-ccCCCcEEE
Confidence 5699999999999999999988876668999998887532 1111111 0111124566666764 367899999
Q ss_pred EccChh------------hHHHHHHHhhhc---CCCCCeEEEeccCCCc
Q 014700 205 HAMPVQ------------FSSSFLEGISDY---VDPGLPFISLSKGLEL 238 (420)
Q Consensus 205 laVp~~------------~l~~vl~~i~~~---l~~~~iVVs~snGi~~ 238 (420)
+..-.. ..-++++.|.|. ..|+++++.++|.++.
T Consensus 94 iTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDi 142 (332)
T KOG1495|consen 94 ITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDI 142 (332)
T ss_pred EecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHH
Confidence 976431 122344444332 2478888888886653
No 267
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.55 E-value=0.013 Score=55.83 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=60.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCC--eEEEEeCC----HHHH-------HHHHHhcCCCCCCCCCCCCCceEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRD----PAVC-------QSINEKHCNCRYFPEQKLPENVIATTDA 193 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~--~V~l~~r~----~~~~-------~~i~~~g~~~~~l~~~~l~~~i~a~td~ 193 (420)
.+||.|+|+|.+|.++|..|.+.|. . +|+++||+ .++. +.+.+.. +. ... ..++
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~~---------~~~--~~~l 91 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKET-NP---------EKT--GGTL 91 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHh-cc---------Ccc--cCCH
Confidence 4699999999999999999999883 3 69999998 3332 2222210 00 011 1256
Q ss_pred HHhccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 194 KTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 194 ~eal~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
.++++++|++|-+++... .++.++.+ .++.+|..++|-.
T Consensus 92 ~~~l~~~dvlIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP~ 131 (226)
T cd05311 92 KEALKGADVFIGVSRPGVVKKEMIKKM----AKDPIVFALANPV 131 (226)
T ss_pred HHHHhcCCEEEeCCCCCCCCHHHHHhh----CCCCEEEEeCCCC
Confidence 677889999999997322 23444443 3566777777643
No 268
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.55 E-value=0.027 Score=54.52 Aligned_cols=147 Identities=19% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
+|||+|.|+ |.||..+.+.+.+.. ++++. .++|.+... ..... ..+-+. -+-++.+.+|+.....++|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~-~~~L~aa~~~~~~~~--~g~d~---ge~~g~-~~~gv~v~~~~~~~~~~~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP-DLELVAAFDRPGSLS--LGSDA---GELAGL-GLLGVPVTDDLLLVKADADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC-CceEEEEEecCCccc--cccch---hhhccc-cccCceeecchhhcccCCCEEE
Confidence 689999998 999999999999875 35554 456654321 00000 000000 0113445566667778999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~ 284 (420)
=.+-+....+.++-... .+..+|.-++|+..+..+.+.+..++ +.++..|++.-.+..
T Consensus 75 DFT~P~~~~~~l~~~~~---~~~~lVIGTTGf~~e~~~~l~~~a~~--------v~vv~a~NfSiGvnl----------- 132 (266)
T COG0289 75 DFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQLEKLREAAEK--------VPVVIAPNFSLGVNL----------- 132 (266)
T ss_pred ECCCchhhHHHHHHHHH---cCCCeEEECCCCCHHHHHHHHHHHhh--------CCEEEeccchHHHHH-----------
Confidence 66655655555554443 23445556779987654433333322 346778887653211
Q ss_pred CHHHHHHHHHHHhcCCceEE
Q 014700 285 DRKLANAVQQLLASKHLRIS 304 (420)
Q Consensus 285 d~e~~~~l~~ll~~~g~~v~ 304 (420)
-...+++..++|. ++.+.
T Consensus 133 l~~l~~~aak~l~--~~DiE 150 (266)
T COG0289 133 LFKLAEQAAKVLD--DYDIE 150 (266)
T ss_pred HHHHHHHHHHhcC--CCCEE
Confidence 1245677777776 44444
No 269
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0055 Score=60.28 Aligned_cols=73 Identities=26% Similarity=0.332 Sum_probs=57.4
Q ss_pred CCCeEEEEcccHH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGam-G~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+|||.|.+ |..+|..|.+.| ..|+++... +.|+.+.++.||+||
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~--atVt~~hs~----------------------------t~~l~~~~~~ADIVV 206 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAG--ATVTICHSK----------------------------TRDLAAHTRQADIVV 206 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEecCC----------------------------CCCHHHHhhhCCEEE
Confidence 4689999999888 999999999987 899986431 125677789999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.+++...+ +. ..+++++++||++.
T Consensus 207 ~avG~~~~---i~--~~~ik~gavVIDVG 230 (285)
T PRK14189 207 AAVGKRNV---LT--ADMVKPGATVIDVG 230 (285)
T ss_pred EcCCCcCc---cC--HHHcCCCCEEEEcc
Confidence 99995542 22 26788999998873
No 270
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.52 E-value=0.011 Score=56.35 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..||.|||+|.+|+.+|..|++.|. .+++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 5699999999999999999999995 5888887663
No 271
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.52 E-value=0.0093 Score=65.10 Aligned_cols=94 Identities=18% Similarity=0.320 Sum_probs=65.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCH---HH-hccCCcE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADY 202 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~---~e-al~~aDi 202 (420)
..+|.|+|.|.+|..+++.|.++| +++++.|.|+++++.+++.|... +.++. +++ ++ -++++|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDa---------t~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRKFGMKV-FYGDA---------TRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhcCCeE-EEEeC---------CCHHHHHhcCCCcCCE
Confidence 468999999999999999999988 89999999999999998765321 22111 232 22 1568999
Q ss_pred EEEccChhh-HHHHHHHhhhcCCCCCeEEEec
Q 014700 203 CLHAMPVQF-SSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 203 VIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~s 233 (420)
+++++.++. ...++..++.+. |+..++.-.
T Consensus 468 vvv~~~d~~~n~~i~~~ar~~~-p~~~iiaRa 498 (621)
T PRK03562 468 LINAIDDPQTSLQLVELVKEHF-PHLQIIARA 498 (621)
T ss_pred EEEEeCCHHHHHHHHHHHHHhC-CCCeEEEEE
Confidence 999999754 444444444443 444444433
No 272
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.44 E-value=0.0064 Score=60.19 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=61.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH---------------------H----HHHHHhcCCCCC------
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV---------------------C----QSINEKHCNCRY------ 177 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~---------------------~----~~i~~~g~~~~~------ 177 (420)
||.|||+|..|+.+|..|+..|. .+++++|.+.-. + +.+++.....+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~ 79 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence 68999999999999999999995 467777654211 1 111111100000
Q ss_pred --CCCCCCCCc----e-EEeCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 178 --FPEQKLPEN----V-IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 178 --l~~~~l~~~----i-~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
.++..+... . .-...+++.++++|+||.|+-+...+.++..+.... ++++|+..-|+
T Consensus 80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~--~k~~I~aalGf 143 (307)
T cd01486 80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAK--NKLVINAALGF 143 (307)
T ss_pred ccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHh--CCcEEEEEecc
Confidence 011111000 0 001124567889999999999888888887775543 34666544444
No 273
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.44 E-value=0.01 Score=58.55 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=55.1
Q ss_pred CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+|||.|. +|.+++..|.+.| ..|+++.|... ++.+.++++|+||
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~g--atVtv~~~~t~----------------------------~L~~~~~~aDIvI 207 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNAN--ATVTICHSRTQ----------------------------NLPELVKQADIIV 207 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC--CEEEEEeCCch----------------------------hHHHHhccCCEEE
Confidence 367999999998 9999999999988 79999987321 3455568999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|++... .+. ..+++++.+|+++.
T Consensus 208 ~AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 208 GAVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred EccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 9996332 111 24577888887763
No 274
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.42 E-value=0.015 Score=62.80 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=62.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH----------------------HH----HHHHHhcCCCC----
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA----------------------VC----QSINEKHCNCR---- 176 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~----------------------~~----~~i~~~g~~~~---- 176 (420)
..||.|||+|..|+.+|..|++.|. .+++++|.+.= ++ +++++.....+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GV-g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~ 416 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGV-RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGH 416 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 4699999999999999999999995 47777775420 11 11111100000
Q ss_pred ----CCCCCCCCCc-e-EE---eCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 177 ----YFPEQKLPEN-V-IA---TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 177 ----~l~~~~l~~~-i-~a---~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
..++..+.+. . .. ...+.+.++++|+||.|+-....+.++..+... .++++|+..-|+
T Consensus 417 ~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~--~~kplI~aAlGf 483 (664)
T TIGR01381 417 RLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSR--HKKIAISAALGF 483 (664)
T ss_pred eeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEEecc
Confidence 0011111000 0 00 013456688999999999998888887766443 245666544343
No 275
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.39 E-value=0.021 Score=57.78 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=57.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCC-CCceEEe-CCHHHhccCCcEE
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKL-PENVIAT-TDAKTALLGADYC 203 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l-~~~i~a~-td~~eal~~aDiV 203 (420)
|||+|+|+ |.||..++..|.+.. .++|..+ +++....+.+.+......| .+..- ...+.+. .++ +...++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~-~~~l~~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP-YFELAKVVASPRSAGKRYGEAVKWIEP-GDMPEYVRDLPIVEPEP-VASKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CceEEEEEEChhhcCCcchhhcccccc-CCCccccceeEEEeCCH-HHhccCCEE
Confidence 58999996 999999999998865 2577765 4433221222211100001 00000 0112222 233 345789999
Q ss_pred EEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|+|+|.....++...+.. .+..+|+++
T Consensus 78 f~a~p~~~s~~~~~~~~~---~G~~VIDls 104 (341)
T TIGR00978 78 FSALPSEVAEEVEPKLAE---AGKPVFSNA 104 (341)
T ss_pred EEeCCHHHHHHHHHHHHH---CCCEEEECC
Confidence 999998877766655533 466677665
No 276
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.35 E-value=0.025 Score=57.25 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=59.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc--------CCCCeEE-EEeCC----------HHHHHHHHHhcCCCCCCCCCCCCCce
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRD----------PAVCQSINEKHCNCRYFPEQKLPENV 187 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~a--------G~~~~V~-l~~r~----------~~~~~~i~~~g~~~~~l~~~~l~~~i 187 (420)
.+||+|+|+|.||..++..|.+. |.+.+|. +++++ .+.+....+.......+ + ..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~-----~-~~ 75 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADY-----P-EG 75 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccC-----c-cc
Confidence 46999999999999999999765 3224554 45643 23333332221111100 1 11
Q ss_pred EEeCCHHHhcc--CCcEEEEccChhhH--HHHHHHhhhcCCCCCeEEEeccCC
Q 014700 188 IATTDAKTALL--GADYCLHAMPVQFS--SSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 188 ~a~td~~eal~--~aDiVIlaVp~~~l--~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
..+.++++.+. +.|+|+.|+|+... +...+.+...+..+..||+..|+.
T Consensus 76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~p 128 (341)
T PRK06270 76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGP 128 (341)
T ss_pred cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHH
Confidence 12346777663 68999999997432 222233344455677787765544
No 277
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.35 E-value=0.016 Score=49.42 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=53.9
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700 128 NKVVVLG----GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (420)
Q Consensus 128 mkI~IIG----aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV 203 (420)
++|+||| .+.+|..+...|.++| ++|+.++...+. + .++.+..+++|.-...|++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G--~~v~~Vnp~~~~---i----------------~G~~~y~sl~e~p~~iDla 59 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG--YEVYPVNPKGGE---I----------------LGIKCYPSLAEIPEPIDLA 59 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSE---E----------------TTEE-BSSGGGCSST-SEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC--CEEEEECCCceE---E----------------CcEEeeccccCCCCCCCEE
Confidence 4799999 6999999999999988 899888654321 0 1345666787733689999
Q ss_pred EEccChhhHHHHHHHhhhc
Q 014700 204 LHAMPVQFSSSFLEGISDY 222 (420)
Q Consensus 204 IlaVp~~~l~~vl~~i~~~ 222 (420)
++++|...+.++++++...
T Consensus 60 vv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 60 VVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp EE-S-HHHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHHc
Confidence 9999999999999998764
No 278
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.33 E-value=0.013 Score=59.15 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=61.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~a-G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.++|.|+|+ |.||+.+++.|+.. | ..++++++|+++.++.+.+..... . ..++++++.++|+|+
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~g-v~~lilv~R~~~rl~~La~el~~~------------~-i~~l~~~l~~aDiVv 220 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTG-VAELLLVARQQERLQELQAELGGG------------K-ILSLEEALPEADIVV 220 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCC-CCEEEEEcCCHHHHHHHHHHhccc------------c-HHhHHHHHccCCEEE
Confidence 579999998 89999999999854 3 258999999988777766532100 1 125677888999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.++...... ++. ...+++..+++++.
T Consensus 221 ~~ts~~~~~-~I~--~~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EID--PETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCC--HHHhCCCeEEEEec
Confidence 988642210 010 12235677888775
No 279
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.33 E-value=0.018 Score=50.34 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 68999999999999999999994 4899998773
No 280
>PRK10206 putative oxidoreductase; Provisional
Probab=96.32 E-value=0.018 Score=58.21 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700 127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY 202 (420)
Q Consensus 127 ~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi 202 (420)
+.||||||+|.++.- .+..+.....+.+|. +++++++.. +..+.. + .+..++|.++.+. +.|+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~------~------~~~~~~~~~ell~~~~iD~ 67 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIY------S------HIHFTSDLDEVLNDPDVKL 67 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhc------C------CCcccCCHHHHhcCCCCCE
Confidence 469999999997752 344443321125665 678877543 333221 0 1245568888875 5799
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
|++|+|.....++...... .++-|+ +-|-+..
T Consensus 68 V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~ 99 (344)
T PRK10206 68 VVVCTHADSHFEYAKRALE---AGKNVL-VEKPFTP 99 (344)
T ss_pred EEEeCCchHHHHHHHHHHH---cCCcEE-EecCCcC
Confidence 9999998877666655443 344443 3565543
No 281
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.32 E-value=0.011 Score=54.26 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=55.7
Q ss_pred CCCeEEEEcccHHHHHHHHH-HH-hcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CC
Q 014700 126 RTNKVVVLGGGSFGTAMAAH-VA-NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA 200 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~-La-~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~a 200 (420)
.+.++.|||+|++|.|++.. +. ++| .+++ ++|.+++.+ |.. .+++ .+.-.+++++.++ +.
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~--~~iv~~FDv~~~~V------G~~---~~~v----~V~~~d~le~~v~~~dv 147 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNG--MKIVAAFDVDPDKV------GTK---IGDV----PVYDLDDLEKFVKKNDV 147 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcC--ceEEEEecCCHHHh------Ccc---cCCe----eeechHHHHHHHHhcCc
Confidence 45699999999999999987 33 444 5655 688888642 211 1111 2333456666665 78
Q ss_pred cEEEEccChhhHHHHHHHhhh
Q 014700 201 DYCLHAMPVQFSSSFLEGISD 221 (420)
Q Consensus 201 DiVIlaVp~~~l~~vl~~i~~ 221 (420)
|+.|+|||...-+++++.+..
T Consensus 148 ~iaiLtVPa~~AQ~vad~Lv~ 168 (211)
T COG2344 148 EIAILTVPAEHAQEVADRLVK 168 (211)
T ss_pred cEEEEEccHHHHHHHHHHHHH
Confidence 999999999888888877644
No 282
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.30 E-value=0.0071 Score=49.61 Aligned_cols=89 Identities=11% Similarity=0.172 Sum_probs=57.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-cCCCCe-EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--CcE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY 202 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~-aG~~~~-V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aDi 202 (420)
..||+|+|+|..|.+++..+.+ .| +. +.++|.++++. |.. + .++.+..+.+++.+. .|+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g--~~i~~~~dv~~~~~------G~~---i------~gipV~~~~~~l~~~~~i~i 65 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRG--FGIVAVFDVDPEKI------GKE---I------GGIPVYGSMDELEEFIEIDI 65 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHC--ECEEEEEEECTTTT------TSE---E------TTEEEESSHHHHHHHCTTSE
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcC--CCCEEEEEcCCCcc------CcE---E------CCEEeeccHHHhhhhhCCCE
Confidence 3589999999999999865544 34 55 44678877521 100 0 134555566665444 999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
.+++||....++++.++... -=+.|++++.
T Consensus 66 aii~VP~~~a~~~~~~~~~~--gIk~i~nft~ 95 (96)
T PF02629_consen 66 AIITVPAEAAQEVADELVEA--GIKGIVNFTP 95 (96)
T ss_dssp EEEES-HHHHHHHHHHHHHT--T-SEEEEESS
T ss_pred EEEEcCHHHHHHHHHHHHHc--CCCEEEEeCC
Confidence 99999999988888887652 1234555543
No 283
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.29 E-value=0.023 Score=60.35 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=65.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC---CCCc-eEEe-CCH--------
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPEN-VIAT-TDA-------- 193 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~---l~~~-i~a~-td~-------- 193 (420)
..||.|+|+|.+|...+..+...| .+|+++|+++++.+..++.|.....++... .... ++.. .+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 469999999999999988888888 689999999998888777654311010000 0000 1111 111
Q ss_pred HHhccCCcEEEEccChhh--HHHH-HHHhhhcCCCCCeEEEec
Q 014700 194 KTALLGADYCLHAMPVQF--SSSF-LEGISDYVDPGLPFISLS 233 (420)
Q Consensus 194 ~eal~~aDiVIlaVp~~~--l~~v-l~~i~~~l~~~~iVVs~s 233 (420)
.+.++++|+||-|+-... -..+ .++....++++..|+.+.
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 222367999999986422 1122 355556667788777664
No 284
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.27 E-value=0.017 Score=50.97 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=57.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|.|+| ....|..++..|.+.| ..|++.+++. .++++.+++||+|+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~g--atV~~~~~~t----------------------------~~l~~~v~~ADIVv 76 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDG--ATVYSCDWKT----------------------------IQLQSKVHDADVVV 76 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEE
Confidence 368999999 5889999999999987 8999887532 15667789999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.++....+ ++ ..+++++++|+++.
T Consensus 77 sAtg~~~~---i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 77 VGSPKPEK---VP--TEWIKPGATVINCS 100 (140)
T ss_pred EecCCCCc---cC--HHHcCCCCEEEEcC
Confidence 99987643 21 45688999998764
No 285
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.26 E-value=0.0066 Score=57.17 Aligned_cols=79 Identities=14% Similarity=0.239 Sum_probs=50.7
Q ss_pred CCeEEEEcccHHHHHHHHHHH--hcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD 201 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La--~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD 201 (420)
..+|+|||+|.+|..++..+. ..| +++. ++|++++.... ...+. .+...+++.+.++ +.|
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g--~~ivgv~D~d~~~~~~---------~i~g~----~v~~~~~l~~li~~~~iD 148 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRG--FKIVAAFDVDPEKIGT---------KIGGI----PVYHIDELEEVVKENDIE 148 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCC--cEEEEEEECChhhcCC---------EeCCe----EEcCHHHHHHHHHHCCCC
Confidence 468999999999999998643 334 6766 56776643211 01111 1122235566554 499
Q ss_pred EEEEccChhhHHHHHHHhh
Q 014700 202 YCLHAMPVQFSSSFLEGIS 220 (420)
Q Consensus 202 iVIlaVp~~~l~~vl~~i~ 220 (420)
.+++|+|.....++.+.+.
T Consensus 149 ~ViIa~P~~~~~~i~~~l~ 167 (213)
T PRK05472 149 IGILTVPAEAAQEVADRLV 167 (213)
T ss_pred EEEEeCCchhHHHHHHHHH
Confidence 9999999887777665554
No 286
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.25 E-value=0.0055 Score=55.46 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=62.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCC-CCCCCC-----------ceEEeCCHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPE-----------NVIATTDAK 194 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~-~~~l~~-----------~i~a~td~~ 194 (420)
..||.|+|+|..|..-+..|..-| ++|+.++.+++..+.+...+....... ...... ...-...+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 479999999999999999999988 999999999987777766442211110 000000 000112345
Q ss_pred HhccCCcEEEEccC--hhhHHHHH-HHhhhcCCCCCeEEEec
Q 014700 195 TALLGADYCLHAMP--VQFSSSFL-EGISDYVDPGLPFISLS 233 (420)
Q Consensus 195 eal~~aDiVIlaVp--~~~l~~vl-~~i~~~l~~~~iVVs~s 233 (420)
+.++.+|+||.+.- ......++ ++....++++.+|+.++
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 66778999997653 22222222 33344466888888875
No 287
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.24 E-value=0.011 Score=56.81 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=32.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
...||.|+|+|.+|+.+|..|++.|. .+++++|.+.-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCcc
Confidence 35799999999999999999999995 58889888753
No 288
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.012 Score=60.88 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=32.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~ 164 (420)
.++|.|||.|.+|.++|..|.+.| ++|+++|+++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G--~~V~g~D~~~~~ 38 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKG--VYVIGVDKSLEA 38 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCC--CEEEEEeCCccc
Confidence 468999999999999999999998 899999987653
No 289
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.24 E-value=0.012 Score=61.29 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=58.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc--------CCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~a--------G~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal 197 (420)
.+||+|||+|.||..++..|.++ |.+.+|. +++|+.++.+ +.. + .....++|+++.+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~-----~~~--------~-~~~~~~~d~~~ll 68 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR-----GVD--------L-PGILLTTDPEELV 68 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc-----CCC--------C-cccceeCCHHHHh
Confidence 47999999999999999888654 2123443 5688765422 110 1 1234567888877
Q ss_pred c--CCcEEEEccChh-hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 198 L--GADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 198 ~--~aDiVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
. +.|+|+.+++.. ...+.+ ...++.++-||+.-|...
T Consensus 69 ~d~~iDvVve~tg~~~~~~~~~---~~aL~~GkhVVtaNK~~~ 108 (426)
T PRK06349 69 NDPDIDIVVELMGGIEPARELI---LKALEAGKHVVTANKALL 108 (426)
T ss_pred hCCCCCEEEECCCCchHHHHHH---HHHHHCCCeEEEcCHHHH
Confidence 5 479999998753 223333 334456777776655443
No 290
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.20 E-value=0.017 Score=53.90 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=31.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..||.|||+|.+|+.++..|+.+|. .+++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 5799999999999999999999995 5899998763
No 291
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.15 E-value=0.016 Score=58.63 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=57.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcE
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADY 202 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDi 202 (420)
..+||+|||+ |..|..+.+.|.+.++ ..++..+......-+.+.. .+. .+.+. .+. +.+.++|+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--------~~~----~~~v~~~~~-~~~~~~D~ 72 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--------EGR----DYTVEELTE-DSFDGVDI 72 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--------cCc----eeEEEeCCH-HHHcCCCE
Confidence 3579999996 9999999999998762 1244444332211011111 110 11221 133 34578999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
||+|+|.....++..++.. .+..||+++.
T Consensus 73 vf~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 101 (344)
T PLN02383 73 ALFSAGGSISKKFGPIAVD---KGAVVVDNSS 101 (344)
T ss_pred EEECCCcHHHHHHHHHHHh---CCCEEEECCc
Confidence 9999999877777665533 5788998874
No 292
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.15 E-value=0.0072 Score=59.66 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=66.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.-||+|||.|.+|+--|+....-| -+|++.+++.++++.+...... .+.....-..++++++..+|++|-+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~~-------rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFGG-------RVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhCc-------eeEEEEcCHHHHHHHhhhccEEEEE
Confidence 358999999999999888887766 8999999998876665543110 0000001112567888999999977
Q ss_pred cC---hhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 207 MP---VQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 207 Vp---~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|- ..+=+=+.+++.+.++++.+||++.
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 63 2222234456667788999998875
No 293
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.07 E-value=0.022 Score=53.72 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=50.4
Q ss_pred EEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 130 I~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~--~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|+|+|+ |.+|..++..|.+.+ ++|++..|+.. ..+.+...|.... ..+. .-..++.++++++|.||++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~--~~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~------~~~~~l~~al~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG--FSVRALVRDPSSDRAQQLQALGAEVV-EADY------DDPESLVAALKGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--GCEEEEESSSHHHHHHHHHHTTTEEE-ES-T------T-HHHHHHHHTTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCC--CCcEEEEeccchhhhhhhhcccceEe-eccc------CCHHHHHHHHcCCceEEee
Confidence 789997 999999999999987 99999999863 4566666543211 0000 0112456678999999999
Q ss_pred cC
Q 014700 207 MP 208 (420)
Q Consensus 207 Vp 208 (420)
++
T Consensus 72 ~~ 73 (233)
T PF05368_consen 72 TP 73 (233)
T ss_dssp SS
T ss_pred cC
Confidence 99
No 294
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.07 E-value=0.018 Score=52.04 Aligned_cols=73 Identities=23% Similarity=0.331 Sum_probs=50.7
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|.|||-+ .+|.+++..|.+.| ..|++..... .++++.++.||+||
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~--atVt~~h~~T----------------------------~~l~~~~~~ADIVV 84 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKG--ATVTICHSKT----------------------------KNLQEITRRADIVV 84 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TTS----------------------------SSHHHHHTTSSEEE
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCC--CeEEeccCCC----------------------------CcccceeeeccEEe
Confidence 47899999976 69999999999988 8999876532 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.++....+ ++ ..+++++.+||++.
T Consensus 85 sa~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 85 SAVGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp E-SSSTT----B---GGGS-TTEEEEE--
T ss_pred eeeccccc---cc--cccccCCcEEEecC
Confidence 99986544 11 45688999998873
No 295
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.03 E-value=0.019 Score=57.99 Aligned_cols=94 Identities=20% Similarity=0.277 Sum_probs=60.1
Q ss_pred cCCCeEEEEcc-cHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCc
Q 014700 125 ERTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGAD 201 (420)
Q Consensus 125 ~~~mkI~IIGa-GamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aD 201 (420)
.+.+||+|||+ |..|.-+.+.|.+..+ ..++..+..+... |.... +.+. .+.+. ++++. ..++|
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa-------G~~~~-~~~~----~~~v~-~~~~~~~~~~D 68 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA-------GETLR-FGGK----SVTVQ-DAAEFDWSQAQ 68 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC-------CceEE-ECCc----ceEEE-eCchhhccCCC
Confidence 45689999997 9999999999998431 2466666543221 21111 1111 22332 33332 36899
Q ss_pred EEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
++|+|+|.....++..++.. .+..||+++.
T Consensus 69 vvf~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 98 (336)
T PRK08040 69 LAFFVAGREASAAYAEEATN---AGCLVIDSSG 98 (336)
T ss_pred EEEECCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 99999998877777666543 5788888874
No 296
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.02 E-value=0.02 Score=57.89 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
...||.|||+|.+|+.+|..|+++|. .+++++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 35799999999999999999999994 4899999874
No 297
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.01 E-value=0.017 Score=57.09 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=48.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCH---HHHHHHHHhcCCCCCCCCCCCC-CceEEeCCHHHhccCCc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP---AVCQSINEKHCNCRYFPEQKLP-ENVIATTDAKTALLGAD 201 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~---~~~~~i~~~g~~~~~l~~~~l~-~~i~a~td~~eal~~aD 201 (420)
.+++.|+|+|.+|.+++..|++.| . +|++++|++ ++.+++.+.- ... .+..... ..+.-..+.++.+..+|
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G--~~~V~I~~R~~~~~~~a~~l~~~l-~~~-~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDG--AKEITIFNIKDDFYERAEQTAEKI-KQE-VPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCchHHHHHHHHHHHH-hhc-CCCceeEEechhhhhHHHhhhccCC
Confidence 468999999999999999999988 5 499999986 4555544321 000 0000000 00000012233456789
Q ss_pred EEEEccCh
Q 014700 202 YCLHAMPV 209 (420)
Q Consensus 202 iVIlaVp~ 209 (420)
+||-++|.
T Consensus 202 ilINaTp~ 209 (289)
T PRK12548 202 ILVNATLV 209 (289)
T ss_pred EEEEeCCC
Confidence 99999884
No 298
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.00 E-value=0.042 Score=55.33 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=55.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhcc-CCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALL-GADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~-~aDiVI 204 (420)
..+|+|+|+|.+|+.-.+.+...| .+|+.++|++++.+..++.|....+ ... .+..+.++ .+|+||
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i----------~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVI----------NSSDSDALEAVKEIADAII 234 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCcEEE----------EcCCchhhHHhHhhCcEEE
Confidence 479999999988885555555567 8999999999998888877643211 111 12222232 399999
Q ss_pred EccChhhHHHHHHHhh
Q 014700 205 HAMPVQFSSSFLEGIS 220 (420)
Q Consensus 205 laVp~~~l~~vl~~i~ 220 (420)
.+++...+...++-+.
T Consensus 235 ~tv~~~~~~~~l~~l~ 250 (339)
T COG1064 235 DTVGPATLEPSLKALR 250 (339)
T ss_pred ECCChhhHHHHHHHHh
Confidence 9999555555554443
No 299
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.00 E-value=0.018 Score=47.86 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=50.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|.|||.|.+|..=+..|.+.| .+|++++++.+..+ .... + .....++.+.++|+||.|
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~~~~~~----~~i~------------~-~~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG--AKVTVISPEIEFSE----GLIQ------------L-IRREFEEDLDGADLVFAA 67 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESSEHHHH----TSCE------------E-EESS-GGGCTTESEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCchhhhh----hHHH------------H-HhhhHHHHHhhheEEEec
Confidence 579999999999999999999998 89999998851111 1110 0 011233447889999999
Q ss_pred cChhhHHHHHHHhh
Q 014700 207 MPVQFSSSFLEGIS 220 (420)
Q Consensus 207 Vp~~~l~~vl~~i~ 220 (420)
+....+.+.+.+..
T Consensus 68 t~d~~~n~~i~~~a 81 (103)
T PF13241_consen 68 TDDPELNEAIYADA 81 (103)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99877665554443
No 300
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.98 E-value=0.021 Score=56.16 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=56.5
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.++|+|||-|. +|.++|..|.+.+ ..|+++.+.. .++++.++.||+||.
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAG--CTVTVCHRFT----------------------------KNLRHHVRNADLLVV 208 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC--CeEEEEECCC----------------------------CCHHHHHhhCCEEEE
Confidence 68999999888 9999999999887 8999986531 156777899999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
++....+ +. ..+++++++||++.
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9953332 11 26678899998874
No 301
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.96 E-value=0.024 Score=52.89 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=31.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 4799999999999999999999995 6899998764
No 302
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.91 E-value=0.05 Score=57.07 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 127 TNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 127 ~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
.++|+|||+ |.+|..+...|.+.|+..+|+.++...+. + .++.+..+++++-...|+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i----------------~G~~~~~sl~~lp~~~Dl 67 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE---I----------------LGVKAYPSVLEIPDPVDL 67 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc---c----------------CCccccCCHHHCCCCCCE
Confidence 578999999 88999999999998832267666554321 1 123445577776567899
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
+++++|...+.++++++... .- +.+|.++.|+..
T Consensus 68 avi~vp~~~~~~~l~e~~~~-gv-~~~vi~s~gf~e 101 (447)
T TIGR02717 68 AVIVVPAKYVPQVVEECGEK-GV-KGAVVITAGFKE 101 (447)
T ss_pred EEEecCHHHHHHHHHHHHhc-CC-CEEEEECCCccc
Confidence 99999999999999888663 22 234456777754
No 303
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.87 E-value=0.022 Score=56.11 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=56.2
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+|||.| .+|..+|..|.+.| ..|+++.... .++++.++.||+||
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~g--AtVtv~hs~t----------------------------~~l~~~~~~ADIvV 205 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAG--ASVSVCHILT----------------------------KDLSFYTQNADIVC 205 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC--CEEEEEeCCc----------------------------HHHHHHHHhCCEEE
Confidence 36899999998 99999999999988 8999874321 14556688999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|+....+ +. ..+++++++||.+.
T Consensus 206 ~AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 206 VGVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred EecCCCCc---CC--HHHcCCCcEEEEee
Confidence 99985543 11 34568899998874
No 304
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.83 E-value=0.2 Score=47.32 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.++|.|||.|.+|..=+..|.+.| .+|+++..+. +....+.+.+.. . .. .-.-++++ +.++++||.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g--a~v~Vvs~~~~~el~~~~~~~~i-~------~~---~~~~~~~~-~~~~~lvia 78 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG--ADVTVVSPEFEPELKALIEEGKI-K------WI---EREFDAED-LDDAFLVIA 78 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC--CEEEEEcCCccHHHHHHHHhcCc-c------hh---hcccChhh-hcCceEEEE
Confidence 579999999999999999999998 8999998765 445555544320 0 00 00113444 456999999
Q ss_pred ccChhhHHHHHHHhh
Q 014700 206 AMPVQFSSSFLEGIS 220 (420)
Q Consensus 206 aVp~~~l~~vl~~i~ 220 (420)
|+.+..+.+-+.+..
T Consensus 79 At~d~~ln~~i~~~a 93 (210)
T COG1648 79 ATDDEELNERIAKAA 93 (210)
T ss_pred eCCCHHHHHHHHHHH
Confidence 999877665554443
No 305
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.82 E-value=0.037 Score=57.70 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=46.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHH----HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVC----QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~----~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD 201 (420)
.++|.|+|+|.+|.++|..|++.| ++|++++++. +.+ +++.+.+.. +...+..++...++|
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~d 70 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGELGIE------------LVLGEYPEEFLEGVD 70 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCE------------EEeCCcchhHhhcCC
Confidence 479999999999999999999999 9999999975 222 222222211 111112234456799
Q ss_pred EEEEccC
Q 014700 202 YCLHAMP 208 (420)
Q Consensus 202 iVIlaVp 208 (420)
+||.+.-
T Consensus 71 ~vv~~~g 77 (450)
T PRK14106 71 LVVVSPG 77 (450)
T ss_pred EEEECCC
Confidence 9999764
No 306
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.82 E-value=0.017 Score=59.80 Aligned_cols=81 Identities=27% Similarity=0.314 Sum_probs=51.7
Q ss_pred CCCeEEEEcccHHHHHHHH--HHHhcC-C-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700 126 RTNKVVVLGGGSFGTAMAA--HVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~--~La~aG-~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD 201 (420)
..+||+|||+|..+++--. .|.+.- + ..++.++|.++++.+.+... ..+++.....+..+..++|.++|+++||
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~--~~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAIL--AKKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHH--HHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 3579999999998876322 222221 0 25899999998876532211 0011111123345788999999999999
Q ss_pred EEEEccC
Q 014700 202 YCLHAMP 208 (420)
Q Consensus 202 iVIlaVp 208 (420)
+|+.++-
T Consensus 80 fVi~~~r 86 (442)
T COG1486 80 FVITQIR 86 (442)
T ss_pred EEEEEEe
Confidence 9999853
No 307
>PRK06153 hypothetical protein; Provisional
Probab=95.76 E-value=0.027 Score=57.62 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=62.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc-C-CCCCCCC--C----------CCCCceE---
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-C-NCRYFPE--Q----------KLPENVI--- 188 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g-~-~~~~l~~--~----------~l~~~i~--- 188 (420)
...+|+|||+|..|+.++..|++.|. -+++++|.+.=....+++.- . ....++. . .+...+.
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~ 253 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP 253 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence 35799999999999999999999985 58888886621111111110 0 0000000 0 0001121
Q ss_pred --EeCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 189 --ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 189 --a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
+..+..+.+.++|+||.|+-....+.++.+.... .+..+|.+.-|+.
T Consensus 254 ~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~ 302 (393)
T PRK06153 254 EYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLE 302 (393)
T ss_pred ecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeecce
Confidence 1112223477899999999987777777655432 2556776654444
No 308
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.76 E-value=0.037 Score=54.52 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=63.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|.|+|+|-.+.+++..|++.|. .++++++|+.++.+++.+...... +.. ......+++. ..++|+||-|
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~--~~~----~~~~~~~~~~-~~~~dliINa 197 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELG--AAV----EAAALADLEG-LEEADLLINA 197 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhcc--ccc----cccccccccc-ccccCEEEEC
Confidence 4789999999999999999999983 589999999999888876421100 000 0011122222 2268999999
Q ss_pred cChhhH----HHHHHHhhhcCCCCCeEEEec
Q 014700 207 MPVQFS----SSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 207 Vp~~~l----~~vl~~i~~~l~~~~iVVs~s 233 (420)
+|..-. ...+. ...++++.++..+.
T Consensus 198 Tp~Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 198 TPVGMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred CCCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 995211 11122 34466777777764
No 309
>PRK08223 hypothetical protein; Validated
Probab=95.75 E-value=0.047 Score=53.87 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=31.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
...||.|||+|.+|+.++..|+++|. .+++++|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 35699999999999999999999996 5888888774
No 310
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.73 E-value=0.029 Score=53.57 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=34.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS 167 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~ 167 (420)
.+|||.|+|+ |.+|..++..|.+.| ++|+++.|+++....
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~ 56 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG--FAVKAGVRDVDKAKT 56 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC--CEEEEEecCHHHHHH
Confidence 4689999996 999999999999988 999999998876543
No 311
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.73 E-value=0.022 Score=57.67 Aligned_cols=88 Identities=17% Similarity=0.307 Sum_probs=56.4
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcEE
Q 014700 129 KVVVLG-GGSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYC 203 (420)
Q Consensus 129 kI~IIG-aGamG~alA~~La~aG~~~~---V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDiV 203 (420)
||+||| .|..|..+...|.+.+ |. +.++.+.+..-+.+. +.+. .+... .+. +.+.++|++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~--hp~~~l~~~as~~~~g~~~~--------~~~~----~~~~~~~~~-~~~~~~D~v 65 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERN--FPIDKLVLLASDRSAGRKVT--------FKGK----ELEVNEAKI-ESFEGIDIA 65 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCC--CChhhEEEEeccccCCCeee--------eCCe----eEEEEeCCh-HHhcCCCEE
Confidence 699999 5999999999999876 44 334545433211221 1110 11221 133 335789999
Q ss_pred EEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
|+|+|.....++...+.. .+..||+++.
T Consensus 66 ~~a~g~~~s~~~a~~~~~---~G~~VID~ss 93 (339)
T TIGR01296 66 LFSAGGSVSKEFAPKAAK---CGAIVIDNTS 93 (339)
T ss_pred EECCCHHHHHHHHHHHHH---CCCEEEECCH
Confidence 999999888777766543 5677887764
No 312
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.70 E-value=0.037 Score=53.35 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
...||+|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 35799999999999999999999995 5888888763
No 313
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.65 E-value=0.026 Score=61.80 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..+||+|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCC
Confidence 4689999999999999999999998 8999999775
No 314
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.64 E-value=0.056 Score=55.33 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=57.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-------------------HHHHHHHhcCCCCCCCCCCCCC-c
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-------------------VCQSINEKHCNCRYFPEQKLPE-N 186 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-------------------~~~~i~~~g~~~~~l~~~~l~~-~ 186 (420)
..+|.|||+|.+|+.++..|+..|. .+++++|.+.= +++.+.+. +. ...|...+.. .
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~-l~-~~np~v~i~~~~ 117 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAER-LK-EIQPDIRVNALR 117 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHH-HH-HHCCCCeeEEee
Confidence 5699999999999999999999985 58999987731 11111110 00 0012211100 0
Q ss_pred eEEe-CCHHHhccCCcEEEEccChhhHHHHHHHhhh
Q 014700 187 VIAT-TDAKTALLGADYCLHAMPVQFSSSFLEGISD 221 (420)
Q Consensus 187 i~a~-td~~eal~~aDiVIlaVp~~~l~~vl~~i~~ 221 (420)
-.+. .+..+.++++|+||-|+-....+..+.++..
T Consensus 118 ~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~ 153 (370)
T PRK05600 118 ERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153 (370)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 0111 2345668899999999998777777766543
No 315
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.63 E-value=0.29 Score=46.64 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=54.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.++|.|||+|.++..=+..|.+.| .+|+++...- +.++.+.+.+. .... .-.-+..+ +.++++||.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~~~-i~~~---------~r~~~~~d-l~g~~LVia 91 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKYGN-LKLI---------KGNYDKEF-IKDKHLIVI 91 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhCCC-EEEE---------eCCCChHH-hCCCcEEEE
Confidence 579999999999999999999988 8999997653 22344443221 1100 00003333 678999999
Q ss_pred ccChhhHHHHHHHhh
Q 014700 206 AMPVQFSSSFLEGIS 220 (420)
Q Consensus 206 aVp~~~l~~vl~~i~ 220 (420)
|+....+-..+....
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999877665554444
No 316
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.62 E-value=0.028 Score=56.39 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=32.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS 167 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~ 167 (420)
||||.|.|+ |.+|+.++..|.+++ +++|++++|+.+....
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~-~~~V~~~~r~~~~~~~ 41 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETT-DWEVYGMDMQTDRLGD 41 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCC-CCeEEEEeCcHHHHHH
Confidence 579999997 999999999998763 2899999987654433
No 317
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.60 E-value=0.015 Score=59.76 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=31.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
|.+|.|||+|.+|.+.|..|++.| ++|+++++.+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 359999999999999999999998 8999999875
No 318
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.58 E-value=0.029 Score=56.03 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=54.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
++||+|||+ |..|.-+.+.|.+.. ..++.....+... . + .+.++...++|++|+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~---------~------------~---~~~~~~~~~~DvvFl 56 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRK---------D------------A---AARRELLNAADVAIL 56 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCC---------c------------c---cCchhhhcCCCEEEE
Confidence 579999995 999999999999874 2344433322210 0 0 122334568999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
|+|...-.++..++.. .+..||+++.
T Consensus 57 alp~~~s~~~~~~~~~---~g~~VIDlSa 82 (313)
T PRK11863 57 CLPDDAAREAVALIDN---PATRVIDAST 82 (313)
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEECCh
Confidence 9998877777766643 5778888874
No 319
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.58 E-value=0.074 Score=53.94 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=60.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-HHHhcCCCCC--CCCCCCCCceEE-eCCHHHhccCCc
Q 014700 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-INEKHCNCRY--FPEQKLPENVIA-TTDAKTALLGAD 201 (420)
Q Consensus 127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~-i~~~g~~~~~--l~~~~l~~~i~a-~td~~eal~~aD 201 (420)
++||+|+| .|.+|..+...|.+.. ..++.++.+++....+ +........| +++. . ..+.+ ..++++ +.++|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p-~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~-~~~~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHP-WFEVTALAASERSAGKTYGEAVRWQLDGPIPEE-V-ADMEVVSTDPEA-VDDVD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCC-CceEEEEEcChhhcCCccccccccccccccccc-c-cceEEEeCCHHH-hcCCC
Confidence 57999998 6999999999999764 3588877555533211 1110000000 0000 0 11222 225544 57899
Q ss_pred EEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+||+|+|.....++.+.+.. .+..+|+++.
T Consensus 79 vVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 79 IVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred EEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 99999999876666655433 4666777664
No 320
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.58 E-value=0.069 Score=45.05 Aligned_cols=86 Identities=17% Similarity=0.256 Sum_probs=53.8
Q ss_pred cccHHHHHHHHHHHhcCC--CCeEE-EEeCC----HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEEE
Q 014700 134 GGGSFGTAMAAHVANKKS--QLKVY-MLMRD----PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL 204 (420)
Q Consensus 134 GaGamG~alA~~La~aG~--~~~V~-l~~r~----~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiVI 204 (420)
|.|.||..++..|.+... +.+|. +++|+ ........ ....++++++.+. +.|+||
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~dvvV 64 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFP----------------DEAFTTDLEELIDDPDIDVVV 64 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHT----------------HSCEESSHHHHHTHTT-SEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcc----------------cccccCCHHHHhcCcCCCEEE
Confidence 899999999999987620 14555 55676 11111111 1245568888777 899999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
-|..+..+.+.+..+ ++.+.-||+..||...
T Consensus 65 E~t~~~~~~~~~~~~---L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 65 ECTSSEAVAEYYEKA---LERGKHVVTANKGALA 95 (117)
T ss_dssp E-SSCHHHHHHHHHH---HHTTCEEEES-HHHHH
T ss_pred ECCCchHHHHHHHHH---HHCCCeEEEECHHHhh
Confidence 998887777665554 4468889988887544
No 321
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.57 E-value=0.038 Score=56.62 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
...||.|||+|..|+.++..|++.|. .+++++|++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 35699999999999999999999994 489999987
No 322
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.45 E-value=0.099 Score=51.67 Aligned_cols=75 Identities=24% Similarity=0.223 Sum_probs=50.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH---HHHHHHHHhcCCCCCCCCCCCCCceEEeC--C---HHHhcc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP---AVCQSINEKHCNCRYFPEQKLPENVIATT--D---AKTALL 198 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~---~~~~~i~~~g~~~~~l~~~~l~~~i~a~t--d---~~eal~ 198 (420)
.+++.|||+|..+.+++..|+..|. .+|++++|++ ++++.+.+.- ...+ ...+...+ + +.+.+.
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~-~~~~------~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRV-NENT------DCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHh-hhcc------CceEEEechhhhhhhhhhcc
Confidence 4689999999999999999998873 5899999994 4666665431 1000 00111111 1 223456
Q ss_pred CCcEEEEccCh
Q 014700 199 GADYCLHAMPV 209 (420)
Q Consensus 199 ~aDiVIlaVp~ 209 (420)
++|+||-|+|.
T Consensus 196 ~aDivINaTp~ 206 (288)
T PRK12749 196 SADILTNGTKV 206 (288)
T ss_pred cCCEEEECCCC
Confidence 78999999985
No 323
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.41 E-value=0.067 Score=52.31 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..+|.|||+|.+|+.+|..|++.|. .+++++|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGI-GAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 4699999999999999999999985 5899998774
No 324
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.41 E-value=0.047 Score=55.36 Aligned_cols=92 Identities=16% Similarity=0.302 Sum_probs=58.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCc
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGAD 201 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~---V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aD 201 (420)
.+||+|||+ |.+|.-|.+.|.+.- +++ +.++...... |.... +.+. .+.+. .++++ +.++|
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~-~f~v~~l~~~aS~~sa-------Gk~~~-~~~~----~l~v~~~~~~~-~~~~D 70 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKET-KFNIAEVTLLSSKRSA-------GKTVQ-FKGR----EIIIQEAKINS-FEGVD 70 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCC-CCCcccEEEEECcccC-------CCCee-eCCc----ceEEEeCCHHH-hcCCC
Confidence 479999997 999999999999532 255 5555543211 21111 1111 12221 24444 57899
Q ss_pred EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG 235 (420)
Q Consensus 202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snG 235 (420)
++|+|+|.....++...+.. .+..||+++.-
T Consensus 71 ivf~a~~~~~s~~~~~~~~~---~G~~VID~Ss~ 101 (347)
T PRK06728 71 IAFFSAGGEVSRQFVNQAVS---SGAIVIDNTSE 101 (347)
T ss_pred EEEECCChHHHHHHHHHHHH---CCCEEEECchh
Confidence 99999998877777766533 57888888743
No 325
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.41 E-value=0.07 Score=56.01 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=45.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-----~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD 201 (420)
.+||+|+|.|.-|.++|..|.+.| ++|+++|+++. ..+.+.+.|.. +.......+.+.++|
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~------------~~~~~~~~~~~~~~d 79 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVK------------LVLGENYLDKLDGFD 79 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCE------------EEeCCCChHHhccCC
Confidence 579999999999999999999998 99999997642 12334443321 111112223357899
Q ss_pred EEEEc
Q 014700 202 YCLHA 206 (420)
Q Consensus 202 iVIla 206 (420)
+||.+
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 99887
No 326
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.40 E-value=0.07 Score=52.63 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=51.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC--CHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t--d~~eal~~aDiVI 204 (420)
.+++.|+|+|-.|.+++..|++.|. .+|++++|+.++++.+.+. .+..+ +.. .+...+ +.++.+..+|+||
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~-~~~~~-~~~----~~~~~~~~~~~~~~~~~divI 199 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADV-INNAV-GRE----AVVGVDARGIEDVIAAADGVV 199 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHH-Hhhcc-Ccc----eEEecCHhHHHHHHhhcCEEE
Confidence 4689999999999999999999873 5899999999988888653 11000 000 011111 1223356789999
Q ss_pred EccCh
Q 014700 205 HAMPV 209 (420)
Q Consensus 205 laVp~ 209 (420)
-++|.
T Consensus 200 NaTp~ 204 (283)
T PRK14027 200 NATPM 204 (283)
T ss_pred EcCCC
Confidence 98883
No 327
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.38 E-value=0.17 Score=49.41 Aligned_cols=44 Identities=11% Similarity=0.367 Sum_probs=39.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~ 171 (420)
.++++.|-|| +.+|..+|..|+++| ++|+++.|++++++++.++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g--~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRG--YNLILVARREDKLEALAKE 49 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHH
Confidence 4578999996 999999999999999 9999999999998888763
No 328
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.38 E-value=0.039 Score=55.23 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=52.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHH---HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC---QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD 201 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~---~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD 201 (420)
..|+|+|-|+ |.+|+.+...|.+.| |.|..-.|+++.- +.+.+.....+.+ ..+...+....+.++++.+||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG--Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l--~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG--YTVRGTVRDPEDEKKTEHLRKLEGAKERL--KLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC--CEEEEEEcCcchhhhHHHHHhcccCcccc--eEEeccccccchHHHHHhCCC
Confidence 4689999996 999999999999999 9999999998752 2233221110000 001112333456788999999
Q ss_pred EEEEc
Q 014700 202 YCLHA 206 (420)
Q Consensus 202 iVIla 206 (420)
.||.+
T Consensus 81 gVfH~ 85 (327)
T KOG1502|consen 81 GVFHT 85 (327)
T ss_pred EEEEe
Confidence 99964
No 329
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.37 E-value=0.03 Score=43.94 Aligned_cols=32 Identities=34% Similarity=0.570 Sum_probs=30.0
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
||.|||+|..|.-+|..|++.| .+|+++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccc
Confidence 6899999999999999999988 8999999875
No 330
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.31 E-value=0.11 Score=51.94 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=54.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.||+|+|+ |..|.-+.+.|+... +.++....-+.. .. ..+.++.+.++|++|+|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~---------~~---------------~~~~~~~~~~~D~vFla 56 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR---------KD---------------AAERAKLLNAADVAILC 56 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc---------cC---------------cCCHhHhhcCCCEEEEC
Confidence 48999995 999999999999864 244443322111 00 01344556789999999
Q ss_pred cChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 207 MPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 207 Vp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+|.....++...+. ..+..||+++.
T Consensus 57 lp~~~s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 57 LPDDAAREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred CCHHHHHHHHHHHH---hCCCEEEECCh
Confidence 99887777766653 35778888874
No 331
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.27 E-value=0.056 Score=53.03 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=51.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHH---HhccCCcEE
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAK---TALLGADYC 203 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~---eal~~aDiV 203 (420)
.||+|||.|.+-...-......+.+..|..+|++++..+.-++-- . ....+..++.+. .|.. ..+.++|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv-~----~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLV-A----SDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHH-H-------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-h----hcccccCCeEEEecchhccccccccCCEE
Confidence 499999999998876555544432257889999997654332210 0 000112233332 2322 225688999
Q ss_pred EEccChh----hHHHHHHHhhhcCCCCCeEEE
Q 014700 204 LHAMPVQ----FSSSFLEGISDYVDPGLPFIS 231 (420)
Q Consensus 204 IlaVp~~----~l~~vl~~i~~~l~~~~iVVs 231 (420)
++|--.. ...++++.+.+++++|+.|+.
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 9987655 788999999999999997764
No 332
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.26 E-value=0.34 Score=48.66 Aligned_cols=94 Identities=18% Similarity=0.257 Sum_probs=57.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHhcCCCCCCCC--CCCCCceEEeCCHHHhccCCcE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPE--QKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~-V~l~~r~~~~~~~i~~~g~~~~~l~~--~~l~~~i~a~td~~eal~~aDi 202 (420)
++||+|+|+ |.+|..|...|.+..+..+ +.++...+..-++- .. +.+ ...+..+ .+.. ..+++|+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~------~~-f~~~~~~v~~~~---~~~~-~~~~~Di 69 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY------IE-FGGKSIGVPEDA---ADEF-VFSDVDI 69 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc------cc-ccCccccCcccc---cccc-ccccCCE
Confidence 479999996 9999999999999543344 55555443221110 11 111 1111111 1222 2568999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK 234 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn 234 (420)
+|.|.+...-+++..++.. .|.+||+.+.
T Consensus 70 vf~~ag~~~s~~~~p~~~~---~G~~VIdnsS 98 (334)
T COG0136 70 VFFAAGGSVSKEVEPKAAE---AGCVVIDNSS 98 (334)
T ss_pred EEEeCchHHHHHHHHHHHH---cCCEEEeCCc
Confidence 9999998777777776654 5778887654
No 333
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.25 E-value=0.049 Score=53.50 Aligned_cols=73 Identities=26% Similarity=0.320 Sum_probs=56.7
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|.|||-+ ..|.++|..|...| ..|+++.++.. ++++.+++||+||
T Consensus 151 ~Gk~V~ViGrs~~vGrpla~lL~~~~--atVtv~hs~t~----------------------------~L~~~~~~ADIvI 200 (279)
T PRK14178 151 AGKRAVVVGRSIDVGRPMAALLLNAD--ATVTICHSKTE----------------------------NLKAELRQADILV 200 (279)
T ss_pred CCCEEEEECCCccccHHHHHHHHhCC--CeeEEEecChh----------------------------HHHHHHhhCCEEE
Confidence 36899999988 99999999999887 89998876431 4566788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.+++...+ +. ..+++++++||++.
T Consensus 201 ~Avgk~~l---v~--~~~vk~GavVIDVg 224 (279)
T PRK14178 201 SAAGKAGF---IT--PDMVKPGATVIDVG 224 (279)
T ss_pred ECCCcccc---cC--HHHcCCCcEEEEee
Confidence 99984332 11 23468999998874
No 334
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.25 E-value=0.14 Score=52.27 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=56.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~---V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
|++|+|||+ |.+|.-|...|.+.- ++. +.++..... +.....+.+.. ..+....+.++ +.++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~-~f~~~~l~~~ss~~s--------g~~~~~f~g~~--~~v~~~~~~~~-~~~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN-DFDLIEPVFFSTSQA--------GGAAPSFGGKE--GTLQDAFDIDA-LKKLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC-CCCcCcEEEecchhh--------CCcccccCCCc--ceEEecCChhH-hcCCCE
Confidence 479999997 999999998554432 244 666544211 11111122211 11222223444 578999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCC--CeEEEecc
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~--~iVVs~sn 234 (420)
+|+|+|.....++..++.. .+ .+||+.+.
T Consensus 69 vf~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss 99 (369)
T PRK06598 69 IITCQGGDYTNEVYPKLRA---AGWQGYWIDAAS 99 (369)
T ss_pred EEECCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 9999999887777766644 45 45888764
No 335
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.21 E-value=0.11 Score=55.09 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=47.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
.++|.|+|+|..|.+.+..|...| ++|+++|+.++..+.+.+.|.. + .......+.+.++|+||.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~~~~~l~~~g~~--~----------~~~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPDALRPHAERGVA--T----------VSTSDAVQQIADYALVVTS 77 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHhCCCE--E----------EcCcchHhHhhcCCEEEEC
Confidence 468999999999999999999988 8999999876655544443321 1 0011222346788999886
Q ss_pred c
Q 014700 207 M 207 (420)
Q Consensus 207 V 207 (420)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
No 336
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.21 E-value=0.12 Score=52.03 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=51.7
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHH-hcCCCCC-CCC--CCC-CCceEEeCCHHHhccCCcEE
Q 014700 130 VVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINE-KHCNCRY-FPE--QKL-PENVIATTDAKTALLGADYC 203 (420)
Q Consensus 130 I~IIGaGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~-~g~~~~~-l~~--~~l-~~~i~a~td~~eal~~aDiV 203 (420)
|+|+|.|.||...+..+.+.. +.+|.. .+.+++....+.. .+....+ .+. ..+ ..++.+..++++.+.++|+|
T Consensus 1 VaInG~GrIGr~varav~~~~-d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV 79 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD-DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV 79 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC-CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence 689999999999999987653 366664 4566664444433 2222110 111 011 12355666789988899999
Q ss_pred EEccChhh
Q 014700 204 LHAMPVQF 211 (420)
Q Consensus 204 IlaVp~~~ 211 (420)
+.|+|...
T Consensus 80 ve~Tp~~~ 87 (333)
T TIGR01546 80 VDATPGGI 87 (333)
T ss_pred EECCCCCC
Confidence 99999643
No 337
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.19 E-value=0.016 Score=58.25 Aligned_cols=107 Identities=10% Similarity=0.115 Sum_probs=57.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhc------CCCCeEE-EEeCCHHHHHHHHHhcCCCCC----CCCCCCC-CceEEeCCHHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANK------KSQLKVY-MLMRDPAVCQSINEKHCNCRY----FPEQKLP-ENVIATTDAKT 195 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~a------G~~~~V~-l~~r~~~~~~~i~~~g~~~~~----l~~~~l~-~~i~a~td~~e 195 (420)
|||+|||.|++|..++..|.+. |.+.+|. +.+++... +++.|++... .....+. .... ..++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l---~~~~Gldl~~l~~~~~~g~l~~~~~~-~~~~~~ 76 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSY---YNERGLDIGKIISYKEKGRLEEIDYE-KIKFDE 76 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcc---cCCcCCChHHHHHHHhcCccccCCCC-cCCHHH
Confidence 5999999999999999999873 3234544 44554311 1111111100 0000000 0000 013444
Q ss_pred hc-cCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 196 AL-LGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 196 al-~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
.+ .++|++|-|+++.. -......+...++.+.-||...||...
T Consensus 77 ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA 121 (326)
T PRK06392 77 IFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLA 121 (326)
T ss_pred HhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHH
Confidence 32 46899999998421 112244445566778889988887543
No 338
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.18 E-value=0.038 Score=51.36 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=59.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceE-EeCCHHHhccCCcEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI-ATTDAKTALLGADYC 203 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~-a~td~~eal~~aDiV 203 (420)
..++|+||| ...+|.++|..|.+.| ..|++++.+.-.. ..+ +...+ .... ... ...++.+.++.||+|
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~--AtVti~~~~~~~~--~~~-~~~~~----hs~t-~~~~~~~~l~~~~~~ADIV 130 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDG--ARVYSVDINGIQV--FTR-GESIR----HEKH-HVTDEEAMTLDCLSQSDVV 130 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEEecCcccc--ccc-ccccc----cccc-cccchhhHHHHHhhhCCEE
Confidence 368999999 5788999999999987 8999997543211 000 00000 0000 000 001266778999999
Q ss_pred EEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|.|++...+. +. .++++++++||++.
T Consensus 131 IsAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 131 ITGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred EEccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 9999965531 11 35678899999873
No 339
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.18 E-value=0.026 Score=57.84 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=31.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
|+|+|||+|.+|.+.|..|++.| ++|++++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence 68999999999999999999998 89999999753
No 340
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.15 E-value=0.26 Score=48.84 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=62.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCe-EEEEeCC--HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--C
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--A 200 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~-V~l~~r~--~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--a 200 (420)
..||+|.|. |.+|..+...|.+.| ++ |..+++. .+ .+ .++.+..+++++-+. .
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g--~~~v~pVnp~~~~~---~v----------------~G~~~y~sv~dlp~~~~~ 66 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG--TNIVGGVTPGKGGT---TV----------------LGLPVFNTVAEAVEATGA 66 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC--CCEEEEECCCCCCC---eE----------------eCeeccCCHHHHhhccCC
Confidence 469999996 999999999999877 55 3334443 11 11 134556678776555 7
Q ss_pred cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
|+.+++||...+.+++++.... . -+.+|.++.|+..
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~-g-vk~avI~s~Gf~~ 102 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDA-G-IDLIVCITEGIPV 102 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHC-C-CCEEEEECCCCCH
Confidence 9999999999999999887652 1 1234446678764
No 341
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.12 E-value=0.066 Score=54.48 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=55.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CC----------------CCCCCCCCCC-ceE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NC----------------RYFPEQKLPE-NVI 188 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~----------------~~l~~~~l~~-~i~ 188 (420)
..||.|||+|.+|+.++..|+..|. .+++++|.+.=....+++.-+ .. ...|...+.. ...
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 5699999999999999999999995 588888877411111111000 00 0011111100 001
Q ss_pred Ee-CCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700 189 AT-TDAKTALLGADYCLHAMPVQFSSSFLEGIS 220 (420)
Q Consensus 189 a~-td~~eal~~aDiVIlaVp~~~l~~vl~~i~ 220 (420)
.. .+..+.++++|+||.|+-....+.++.++.
T Consensus 107 i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 107 LTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred cCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11 122456789999999998777666666553
No 342
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.10 E-value=0.056 Score=53.27 Aligned_cols=73 Identities=25% Similarity=0.311 Sum_probs=55.6
Q ss_pred CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+|||-|. +|.++|..|.+.| ..|+++.... .++++.++.||+||
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvv 212 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRN--ATVSVCHVFT----------------------------DDLKKYTLDADILV 212 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCC--CEEEEEeccC----------------------------CCHHHHHhhCCEEE
Confidence 468999999988 9999999999887 8999886321 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|+--..+ +. ..+++++++||++.
T Consensus 213 ~AvG~p~~---i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 213 VATGVKHL---IK--ADMVKEGAVIFDVG 236 (287)
T ss_pred EccCCccc---cC--HHHcCCCcEEEEec
Confidence 97764321 11 34678899998863
No 343
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.08 E-value=0.075 Score=56.03 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=31.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..+||.|||+|..|...|..|++.| ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCC
Confidence 4579999999999999999999998 8999998764
No 344
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.04 E-value=0.054 Score=59.50 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=32.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..+||+|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4679999999999999999999998 9999999764
No 345
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.02 E-value=0.12 Score=49.88 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=31.7
Q ss_pred hcCCCeEEEEcccHHHHHHHHHHHhcCC-----C----CeEEEEeCCH
Q 014700 124 LERTNKVVVLGGGSFGTAMAAHVANKKS-----Q----LKVYMLMRDP 162 (420)
Q Consensus 124 ~~~~mkI~IIGaGamG~alA~~La~aG~-----~----~~V~l~~r~~ 162 (420)
..+..||.|||+|..|+.++..|++.|. + .+++++|.+.
T Consensus 8 ~~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 8 LSRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred HhCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3456799999999999999999999741 1 3889998764
No 346
>PRK06847 hypothetical protein; Provisional
Probab=95.00 E-value=0.027 Score=56.82 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=33.0
Q ss_pred hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
|..+++|.|||+|..|.++|..|++.| ++|+++++++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~ 37 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDP 37 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence 345679999999999999999999998 8999999875
No 347
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.069 Score=52.63 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=56.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~--atVt~chs~t----------------------------~~l~~~~~~ADIvI 206 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNEN--ATVTYCHSKT----------------------------KNLAELTKQADILI 206 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEEeCCc----------------------------hhHHHHHHhCCEEE
Confidence 468999999 6889999999999887 8999875321 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.++....+ +. ..+++++++||++.
T Consensus 207 ~AvG~p~~---i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 207 VAVGKPKL---IT--ADMVKEGAVVIDVG 230 (284)
T ss_pred EecCCCCc---CC--HHHcCCCCEEEEee
Confidence 99975543 11 35678999998873
No 348
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.93 E-value=0.03 Score=56.99 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=32.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
..++|.|||+|..|.++|..|++.| ++|++++|.++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCcc
Confidence 3579999999999999999999998 89999998753
No 349
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.92 E-value=0.15 Score=51.10 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=63.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcC-CCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC--cE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA--DY 202 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG-~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a--Di 202 (420)
.-|+||+|+|.|+.-+++.|...- .+|.|+ +.+|+.+++.++.+.+. +| +.++..+.+|.+++. |+
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~---------~~-~~k~y~syEeLakd~~vDv 75 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHN---------IP-NPKAYGSYEELAKDPEVDV 75 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcC---------CC-CCccccCHHHHhcCCCcCE
Confidence 458999999999999999986542 136766 56898888888877542 22 446777888888765 99
Q ss_pred EEEccChhhHHHHHHHhhh
Q 014700 203 CLHAMPVQFSSSFLEGISD 221 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~ 221 (420)
|.+++|..+..+++-.+..
T Consensus 76 Vyi~~~~~qH~evv~l~l~ 94 (351)
T KOG2741|consen 76 VYISTPNPQHYEVVMLALN 94 (351)
T ss_pred EEeCCCCccHHHHHHHHHH
Confidence 9999998877776655544
No 350
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.92 E-value=0.075 Score=60.38 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=32.0
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
...+||+|||+|.-|.+.|..|++.| |+|++++..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccc
Confidence 35789999999999999999999998 999999963
No 351
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.90 E-value=0.097 Score=55.25 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=33.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS 167 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~ 167 (420)
++||.|+|+|..|.++|..|.+.| ++|+++|++......
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~ 53 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELG--CDVVVADDNETARHK 53 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC--CEEEEECCChHHHHH
Confidence 578999999999999999999998 899999987654433
No 352
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.88 E-value=0.1 Score=54.93 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.++|.|||+|..|..+|..|++.| ++|+++++.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 468999999999999999999988 8999999654
No 353
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.87 E-value=0.095 Score=51.38 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=48.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM 207 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV 207 (420)
+++.|+|+|..+.+++..|++.|. .+|++++|+.++.+.+.+.- .. ....++. ...+|+||-|+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~~a~~la~~~-~~------------~~~~~~~--~~~~dlvINaT 186 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF-TDGTIVARNEKTGKALAELY-GY------------EWRPDLG--GIEADILVNVT 186 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHh-CC------------cchhhcc--cccCCEEEECC
Confidence 589999999999999999998872 47999999999888887631 10 0000111 24589999999
Q ss_pred Ch
Q 014700 208 PV 209 (420)
Q Consensus 208 p~ 209 (420)
|.
T Consensus 187 p~ 188 (272)
T PRK12550 187 PI 188 (272)
T ss_pred cc
Confidence 84
No 354
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.062 Score=52.79 Aligned_cols=73 Identities=23% Similarity=0.243 Sum_probs=55.9
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+|||-+ .+|..+|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~--AtVti~hs~T----------------------------~~l~~~~~~ADIvV 205 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNAN--ATVDICHIFT----------------------------KDLKAHTKKADIVI 205 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEE
Confidence 46899999987 99999999999887 7998764311 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|+.-..+ +. ..+++++++||++.
T Consensus 206 ~AvGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 206 VGVGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred EecCcccc---cC--HHHcCCCcEEEEee
Confidence 99985443 11 45678899998863
No 355
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.86 E-value=0.13 Score=52.09 Aligned_cols=92 Identities=22% Similarity=0.186 Sum_probs=55.2
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCC-CCCCCCCCCCceEEeCCHHHhc--cCCcEEEE
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNC-RYFPEQKLPENVIATTDAKTAL--LGADYCLH 205 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~-~~l~~~~l~~~i~a~td~~eal--~~aDiVIl 205 (420)
++.|+|+|.+|...+..+...| ..+|++.|+++++++..++.+... ...+... .......+.. ..+|++|-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-----~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGADVVVNPSED-----DAGAEILELTGGRGADVVIE 244 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCCeEeecCccc-----cHHHHHHHHhCCCCCCEEEE
Confidence 7999999999998877777776 368889999999888777633111 1000000 0000011222 25999999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeE
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPF 229 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iV 229 (420)
|+-... .+++....++++-.+
T Consensus 245 ~~G~~~---~~~~ai~~~r~gG~v 265 (350)
T COG1063 245 AVGSPP---ALDQALEALRPGGTV 265 (350)
T ss_pred CCCCHH---HHHHHHHHhcCCCEE
Confidence 999433 344444444444433
No 356
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=94.85 E-value=1.6 Score=42.67 Aligned_cols=163 Identities=16% Similarity=0.213 Sum_probs=91.2
Q ss_pred CceEEeCCHHHhccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE
Q 014700 185 ENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS 263 (420)
Q Consensus 185 ~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~ 263 (420)
-++++++|-.|+++++|++|+-+|--. ...+++.+.++++++.+|.+... +.+- .+...+.+ ++.. ++.+.+
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCT-Ipt~---~ly~~le~-l~R~--DvgIsS 199 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACT-IPTT---KFAKIFKD-LGRD--DLNVTS 199 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecccc-CCHH---HHHHHHHH-hCcc--cCCeec
Confidence 367888888899999999999999644 67899999999999998865442 4432 23344443 4432 222221
Q ss_pred C-cccHHHHhhcCCeEEEEe--cCCHHHHHHHHHHHhcCCceEEEc-CChhHHH--HHHHHHHHHHHHHHHHHhcc----
Q 014700 264 G-PSFALELMNKLPTAMVVA--SKDRKLANAVQQLLASKHLRISTS-SDVTGVE--IAGALKNVLAIAAGIVVGMN---- 333 (420)
Q Consensus 264 G-P~~a~ev~~g~~t~i~ia--~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~e--~~~alkNv~Ai~~G~~~gl~---- 333 (420)
- |.-.- +.+....++ -.+++..+++.++.++.+...|.. .|+.+.. +++++--+ ...|+++-..
T Consensus 200 ~HPaaVP----gt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VTAv--~~aGiL~Y~~~~tq 273 (342)
T PRK00961 200 YHPGAVP----EMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVTAI--VYAGILAYRDAVTQ 273 (342)
T ss_pred cCCCCCC----CCCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHH--HHHHHHHHHHHHHH
Confidence 1 11110 111111222 236788999999999887766553 3443321 22222111 1123332221
Q ss_pred -cch--hHHHHHHHHHHHHHHHHHHHcCCC
Q 014700 334 -LGN--NSMAALVAQGCSEIRWLATKMGAK 360 (420)
Q Consensus 334 -lg~--N~~~al~~~~~~E~~~lA~a~Gi~ 360 (420)
++- ...-..+...+.-+..|-+..|++
T Consensus 274 IlgAP~~mie~qa~eaL~tmasLme~~GI~ 303 (342)
T PRK00961 274 ILGAPADFAQMMADEALTQITALMREEGID 303 (342)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 111 112234455667777788888875
No 357
>PRK06753 hypothetical protein; Provisional
Probab=94.79 E-value=0.034 Score=56.13 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
|+|.|||+|..|.++|..|+++| ++|+++.+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 69999999999999999999998 89999998764
No 358
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.77 E-value=0.068 Score=52.71 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=56.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~--aTVtichs~T----------------------------~~l~~~~~~ADIvI 203 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLRED--ATVTLAHSKT----------------------------QDLPAVTRRADVLV 203 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5789999999999887 7999775321 15677788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+....+ + -..+++++++||++
T Consensus 204 sAvGkp~~---i--~~~~vk~GavVIDV 226 (287)
T PRK14173 204 VAVGRPHL---I--TPEMVRPGAVVVDV 226 (287)
T ss_pred EecCCcCc---c--CHHHcCCCCEEEEc
Confidence 99985543 1 14567899999886
No 359
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.68 E-value=0.25 Score=48.82 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=63.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--Cc
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD 201 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aD 201 (420)
+..||+|.| .|.+|..+-..|...| .+ .++..++.+ .+.+ .++.+..+++|+-+. .|
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g--~~-~v~~V~p~~~~~~v----------------~G~~~y~sv~dlp~~~~~D 65 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYG--TN-IVGGVTPGKGGTTV----------------LGLPVFDSVKEAVEETGAN 65 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCC--CC-EEEEECCCCCccee----------------cCeeccCCHHHHhhccCCC
Confidence 356999999 5999999999999888 56 555555421 0010 134556677775544 69
Q ss_pred EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700 202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238 (420)
Q Consensus 202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~ 238 (420)
+.++++|...+.+++++.... . -..+|.++.|+..
T Consensus 66 lavi~vpa~~v~~~l~e~~~~-G-vk~avIis~Gf~e 100 (286)
T TIGR01019 66 ASVIFVPAPFAADAIFEAIDA-G-IELIVCITEGIPV 100 (286)
T ss_pred EEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCH
Confidence 999999999999999887652 1 1244446778754
No 360
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.082 Score=52.40 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=56.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvI 206 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAAN--ATVTIAHSRT----------------------------QDLASITREADILV 206 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5789999999999887 8998874321 15677788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|+.-..+ +. ..+++++++||++.
T Consensus 207 sAvGkp~~---i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 207 AAAGRPNL---IG--AEMVKPGAVVVDVG 230 (297)
T ss_pred EccCCcCc---cC--HHHcCCCCEEEEec
Confidence 99985442 11 45678999998873
No 361
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.56 E-value=0.082 Score=58.14 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..+||+|||+|..|...|..|++.| ++|+++++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence 3579999999999999999999998 9999998764
No 362
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.54 E-value=0.083 Score=51.98 Aligned_cols=72 Identities=24% Similarity=0.326 Sum_probs=55.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI 204 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHD--ATVTIAHSKT----------------------------RNLKQLTKEADILV 204 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEECCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5789999999999887 8999774321 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+.-..+ +. ..+++++++||++
T Consensus 205 ~AvG~p~~---i~--~~~vk~GavVIDv 227 (282)
T PRK14169 205 VAVGVPHF---IG--ADAVKPGAVVIDV 227 (282)
T ss_pred EccCCcCc---cC--HHHcCCCcEEEEe
Confidence 99985543 11 3567889999886
No 363
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.52 E-value=0.027 Score=55.27 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=46.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|||.|.|+ |.+|..++..|++.| ++|++++|+++....+...+. .++ ...+.-..+++++++++|+||.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~-----~~D~~~~~~l~~~~~~~d~vi~~ 71 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG--EEVRVLVRPTSDRRNLEGLDV--EIV-----EGDLRDPASLRKAVAGCRALFHV 71 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC--CEEEEEEecCccccccccCCc--eEE-----EeeCCCHHHHHHHHhCCCEEEEe
Confidence 58999995 999999999999998 899999998654322221110 000 00011112345567789999876
Q ss_pred c
Q 014700 207 M 207 (420)
Q Consensus 207 V 207 (420)
.
T Consensus 72 a 72 (328)
T TIGR03466 72 A 72 (328)
T ss_pred c
Confidence 5
No 364
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.51 E-value=0.086 Score=51.76 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=56.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++.+..+.||+||
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~--AtVt~chs~T----------------------------~~l~~~~~~ADIvI 206 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNEN--ATVTICHSKT----------------------------KNLKEVCKKADILV 206 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5789999999999887 8999886421 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+....+ +. ..+++++.+||++
T Consensus 207 sAvGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 207 VAIGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred EcCCCcCc---cC--HHHcCCCcEEEEe
Confidence 99985543 11 3567899999887
No 365
>PLN02427 UDP-apiose/xylose synthase
Probab=94.48 E-value=0.07 Score=54.40 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCC-CCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l-~~~i~a~td~~eal~~aDiVI 204 (420)
.|||.|.|+ |-+|+.++..|.++| +++|++++|+.+....+...+. ....+++.+ ...+.-..+++++++++|+||
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLLEPDT-VPWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhhcccc-ccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 579999995 999999999999873 2899999988765544432210 000001110 001111113445677899999
Q ss_pred Ecc
Q 014700 205 HAM 207 (420)
Q Consensus 205 laV 207 (420)
.+.
T Consensus 92 HlA 94 (386)
T PLN02427 92 NLA 94 (386)
T ss_pred Ecc
Confidence 765
No 366
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.45 E-value=0.11 Score=52.41 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=32.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
.+||.|||+|-||...+..|.++|. .+|++.+|+.+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~-~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGY-SRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence 4799999999999999999999883 57999999874
No 367
>PRK07877 hypothetical protein; Provisional
Probab=94.43 E-value=0.079 Score=58.68 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=56.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCC----------------CCCCC---CCc
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF----------------PEQKL---PEN 186 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l----------------~~~~l---~~~ 186 (420)
...||+|+|+| +|+..|..|+++|.--+++++|.+.=....+|........+ |...+ +..
T Consensus 106 ~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 106 GRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred hcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 35799999999 99999999999982027888877642221222210000001 11111 111
Q ss_pred eEEeCCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700 187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGIS 220 (420)
Q Consensus 187 i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~ 220 (420)
+. ..+.++.+.++|+||-|+-....+-++.+..
T Consensus 185 i~-~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a 217 (722)
T PRK07877 185 LT-EDNVDAFLDGLDVVVEECDSLDVKVLLREAA 217 (722)
T ss_pred CC-HHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 11 1245666789999999999887777776543
No 368
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.42 E-value=0.092 Score=51.70 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=56.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .|+++..+.||+||
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~~l~~~~~~ADIvI 207 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMN--ATVTLCHSKT----------------------------QNLPSIVRQADIIV 207 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 5889999999999887 8999875321 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+....+ +. ..+++++++||++
T Consensus 208 sAvGk~~~---i~--~~~ik~gavVIDv 230 (284)
T PRK14177 208 GAVGKPEF---IK--ADWISEGAVLLDA 230 (284)
T ss_pred EeCCCcCc---cC--HHHcCCCCEEEEe
Confidence 99985543 11 4567899999987
No 369
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.42 E-value=0.16 Score=48.22 Aligned_cols=96 Identities=11% Similarity=-0.036 Sum_probs=58.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH----------HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP----------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~----------~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea 196 (420)
.++|+|.|.|++|..+|..|.+.|. ..|.+.|.+. +.++...+.+.... .+. .... +.++.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~-~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~-~~~------~~~~-~~~~l 93 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGG-KVLAVSDPDGYIYDPGITTEELINYAVALGGSAR-VKV------QDYF-PGEAI 93 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccc-cCc------cccc-Ccccc
Confidence 6899999999999999999999971 3566677777 65555554432111 111 0111 11222
Q ss_pred -ccCCcEEEEccChhhH-HHHHHHhhhcCCCCCeEEEeccCC
Q 014700 197 -LLGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 197 -l~~aDiVIlaVp~~~l-~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
-.+||++|-|.....+ .+...++ + -++|+...|+-
T Consensus 94 ~~~~~DVlipaA~~~~i~~~~a~~l----~-a~~V~e~AN~p 130 (217)
T cd05211 94 LGLDVDIFAPCALGNVIDLENAKKL----K-AKVVAEGANNP 130 (217)
T ss_pred eeccccEEeeccccCccChhhHhhc----C-ccEEEeCCCCC
Confidence 1379999999886643 2223332 2 34666667753
No 370
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.41 E-value=0.1 Score=53.81 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=55.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCCCCCCC----------CCCCceEE------
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPENVIA------ 189 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~~l~~~----------~l~~~i~a------ 189 (420)
..||.|||+|.+|+.+|..|+.+|. .+++++|.+.-....+++.-+ ....++.. .+.+.+++
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence 5699999999999999999999995 478888876422112221100 00000000 01111111
Q ss_pred -e-CCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700 190 -T-TDAKTALLGADYCLHAMPVQFSSSFLEGIS 220 (420)
Q Consensus 190 -~-td~~eal~~aDiVIlaVp~~~l~~vl~~i~ 220 (420)
. .+..+.++++|+||.|+-....+..+.++.
T Consensus 121 i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 153 (392)
T PRK07878 121 LDPSNAVELFSQYDLILDGTDNFATRYLVNDAA 153 (392)
T ss_pred CChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 1 123456788999999988777666666654
No 371
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.094 Score=51.59 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=56.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++..+.||+||
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~nl~~~~~~ADIvI 205 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAG--ATVSVCHIKT----------------------------KDLSLYTRQADLII 205 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 5789999999999887 8999775421 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|+....+ +. ..+++++++||++.
T Consensus 206 sAvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 206 VAAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred EcCCCcCc---cC--HHHcCCCCEEEEec
Confidence 99985543 11 35678999998873
No 372
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=94.38 E-value=0.22 Score=41.46 Aligned_cols=84 Identities=15% Similarity=-0.001 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhhHHH-HH
Q 014700 138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS-FL 216 (420)
Q Consensus 138 mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~-vl 216 (420)
-+..++..|.+.| .+|.++|..-....... .+. ..++...++++++++++|+||++++...... -.
T Consensus 18 p~~~l~~~L~~~g--~~V~~~DP~v~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 18 PALELIEELKERG--AEVSVYDPYVDEEEIKE-LGK----------LEGVEVCDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp HHHHHHHHHHHTT---EEEEE-TTSHHHHHHH-HCH----------HHCEEEESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred HHHHHHHHHHHCC--CEEEEECCccChHHHHh-hCC----------ccceEEecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 3466889999998 89999998654322222 110 0135677789999999999999999766554 34
Q ss_pred HHhhhcCCCCCeEEEecc
Q 014700 217 EGISDYVDPGLPFISLSK 234 (420)
Q Consensus 217 ~~i~~~l~~~~iVVs~sn 234 (420)
+.+...+.+..+|+.+-+
T Consensus 85 ~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp HHHHHHSCSSEEEEESSS
T ss_pred HHHHHhcCCCCEEEECcc
Confidence 566666666778887654
No 373
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.38 E-value=0.19 Score=47.95 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=58.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeC----------CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMR----------DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT 195 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r----------~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e 195 (420)
.++|+|.|.|++|..++..|.+.| ..|+ +.|. +.+.+.++.+.......+++ . ... +.++
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g--~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~-----~-~~~-~~~~ 101 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAG--AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPG-----A-ERI-TNEE 101 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCC-----c-eec-CCcc
Confidence 689999999999999999999988 7888 5565 55555555443222111111 1 111 1222
Q ss_pred h-ccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCC
Q 014700 196 A-LLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGL 236 (420)
Q Consensus 196 a-l~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi 236 (420)
. -.+||+++-|.+... ..+.+.++. -++|+-..|+-
T Consensus 102 i~~~~~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~ 139 (227)
T cd01076 102 LLELDCDILIPAALENQITADNADRIK-----AKIIVEAANGP 139 (227)
T ss_pred ceeecccEEEecCccCccCHHHHhhce-----eeEEEeCCCCC
Confidence 2 237999999987654 334444432 34666666653
No 374
>PRK05868 hypothetical protein; Validated
Probab=94.37 E-value=0.045 Score=55.73 Aligned_cols=35 Identities=34% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
|++|.|||+|..|.++|..|++.| ++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Confidence 579999999999999999999998 89999997753
No 375
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.37 E-value=0.15 Score=54.67 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=38.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK 171 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~ 171 (420)
.+++.|+|+|.+|.+++..|++.| .+|++++|+.++.+.+.+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G--~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKG--ARVVIANRTYERAKELADA 421 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHH
Confidence 468999999999999999999998 7999999998888777653
No 376
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.36 E-value=0.056 Score=55.42 Aligned_cols=46 Identities=33% Similarity=0.595 Sum_probs=35.4
Q ss_pred ccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhc-CCCC-eEEEEeCCH
Q 014700 111 WSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANK-KSQL-KVYMLMRDP 162 (420)
Q Consensus 111 ~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~a-G~~~-~V~l~~r~~ 162 (420)
|++.|+..+ ....-.|.|||+|.+|.++|..|++. | . +|+++++..
T Consensus 18 ~~~~~~~~~----~~~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~ 65 (407)
T TIGR01373 18 WKPAWRSPE----PKPTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGW 65 (407)
T ss_pred CCcccCCCC----CCccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEccc
Confidence 776555543 12234799999999999999999985 6 4 899999863
No 377
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.35 E-value=0.098 Score=51.46 Aligned_cols=72 Identities=25% Similarity=0.244 Sum_probs=56.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .|+.+..+.||+||
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~--ATVt~chs~T----------------------------~dl~~~~k~ADIvI 206 (282)
T PRK14180 157 EGAYAVVVGASNVVGKPVSQLLLNAK--ATVTTCHRFT----------------------------TDLKSHTTKADILI 206 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHhhhcCEEE
Confidence 368999999 5789999999999887 8999875321 15666688999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+....+ +. ..+++++++||++
T Consensus 207 sAvGkp~~---i~--~~~vk~gavVIDv 229 (282)
T PRK14180 207 VAVGKPNF---IT--ADMVKEGAVVIDV 229 (282)
T ss_pred EccCCcCc---CC--HHHcCCCcEEEEe
Confidence 99985543 11 3567889999886
No 378
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.31 E-value=0.097 Score=51.52 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=55.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI 205 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNEN--ATVTIAHSRT----------------------------KDLPQVAKEADILV 205 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5778999999999887 8999874321 25677789999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+....+ +. ..+++++++||++
T Consensus 206 ~AvG~~~~---i~--~~~vk~GavVIDv 228 (284)
T PRK14170 206 VATGLAKF---VK--KDYIKPGAIVIDV 228 (284)
T ss_pred EecCCcCc---cC--HHHcCCCCEEEEc
Confidence 99985543 11 3567889999886
No 379
>PRK08374 homoserine dehydrogenase; Provisional
Probab=94.26 E-value=0.082 Score=53.42 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHh--------cCCCCeEE-EEeCCHHH-------HHHHHHhcCCCCCCCCCCCCCceEE-
Q 014700 127 TNKVVVLGGGSFGTAMAAHVAN--------KKSQLKVY-MLMRDPAV-------CQSINEKHCNCRYFPEQKLPENVIA- 189 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~--------aG~~~~V~-l~~r~~~~-------~~~i~~~g~~~~~l~~~~l~~~i~a- 189 (420)
.++|+|+|.|++|..++..|.+ .|.+..|. +.+++... ..++.+.......+.. ++.....
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~--~~~~~~~~ 79 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSN--WGNDYEVY 79 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhh--cccccccc
Confidence 4799999999999999999887 34223444 33443211 1111110000000000 1000000
Q ss_pred eCCHHHhc--cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 190 TTDAKTAL--LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 190 ~td~~eal--~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
..++++.+ .++|+||-++......++..+ .+..+..||...||..
T Consensus 80 ~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~---al~~G~~VVtanK~~l 126 (336)
T PRK08374 80 NFSPEEIVEEIDADIVVDVTNDKNAHEWHLE---ALKEGKSVVTSNKPPI 126 (336)
T ss_pred CCCHHHHHhcCCCCEEEECCCcHHHHHHHHH---HHhhCCcEEECCHHHH
Confidence 11566665 479999999987655555444 3456788888888743
No 380
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.26 E-value=0.11 Score=51.53 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=56.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~--ATVtvchs~T----------------------------~nl~~~~~~ADIvv 215 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKAD--ATVTVVHSRT----------------------------PDPESIVREADIVI 215 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5788999999999887 8999884321 15677789999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|+....+ +. ..+++++++||++.
T Consensus 216 ~AvGk~~~---i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 216 AAAGQAMM---IK--GDWIKPGAAVIDVG 239 (299)
T ss_pred EcCCCcCc---cC--HHHcCCCCEEEEee
Confidence 99975421 11 45678999998863
No 381
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.23 E-value=0.11 Score=55.99 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
..++|+|||+|..|.+.|..|++.| ++|+++++.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence 4679999999999999999999998 899999853
No 382
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=94.19 E-value=0.37 Score=42.21 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=72.5
Q ss_pred hhcCCCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700 123 ILERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL 198 (420)
Q Consensus 123 ~~~~~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~ 198 (420)
...+.++|+++|+ ..-+...+..|.++| ++|+-++....- +.+.. .++..+++|.-+
T Consensus 12 iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~G--Y~ViPVNP~~~~-~eiLG----------------~k~y~sL~dIpe 72 (140)
T COG1832 12 ILKSAKTIAVVGASDKPDRPSYRVAKYLQQKG--YRVIPVNPKLAG-EEILG----------------EKVYPSLADIPE 72 (140)
T ss_pred HHHhCceEEEEecCCCCCccHHHHHHHHHHCC--CEEEeeCcccch-HHhcC----------------chhhhcHHhCCC
Confidence 3455689999998 568889999999999 999988774321 22221 234457888667
Q ss_pred CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch
Q 014700 199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT 240 (420)
Q Consensus 199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t 240 (420)
..|+|-+..++..+.+++++.... +.-++-+|-|+.+++
T Consensus 73 ~IDiVdvFR~~e~~~~i~~eal~~---~~kv~W~QlGi~n~e 111 (140)
T COG1832 73 PIDIVDVFRRSEAAPEVAREALEK---GAKVVWLQLGIRNEE 111 (140)
T ss_pred CCcEEEEecChhhhHHHHHHHHhh---CCCeEEEecCcCCHH
Confidence 889999999999999999887653 466788899998753
No 383
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.17 E-value=0.13 Score=53.96 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=44.8
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~a-lA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.++|.|||+|..|.+ +|..|.+.| ++|+++|.+.. ..+.+.+.|... ....+. +.+.++|+||
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G--~~V~~~D~~~~~~~~~l~~~gi~~------------~~~~~~-~~~~~~d~vv 71 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLG--YKVSGSDLKESAVTQRLLELGAII------------FIGHDA-ENIKDADVVV 71 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCC--CeEEEECCCCChHHHHHHHCCCEE------------eCCCCH-HHCCCCCEEE
Confidence 468999999999999 799999998 99999997542 233444433211 001123 3466789988
Q ss_pred Ec
Q 014700 205 HA 206 (420)
Q Consensus 205 la 206 (420)
++
T Consensus 72 ~s 73 (461)
T PRK00421 72 YS 73 (461)
T ss_pred EC
Confidence 75
No 384
>PRK07236 hypothetical protein; Provisional
Probab=94.16 E-value=0.061 Score=54.80 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=31.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.++|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence 479999999999999999999998 8999999875
No 385
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.16 E-value=0.06 Score=52.97 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=28.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.+|.|||+|.-|.++|..|+++| ++|+++++.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcc--cccccchhcc
Confidence 47999999999999999999999 9999999875
No 386
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.14 E-value=0.12 Score=50.93 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.6
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (420)
Q Consensus 127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~ 164 (420)
.++|.|.| +|-+|+.++..|.+.| ++|++++|+.+.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g--~~V~~~~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRG--YTVKATVRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCC--CEEEEEEcCCCc
Confidence 36899999 5999999999999998 999999887643
No 387
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.12 E-value=0.43 Score=46.88 Aligned_cols=101 Identities=11% Similarity=0.135 Sum_probs=66.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc----CCC-----CeEEEEeCCH------HHHHHHHHhcCCCCCCCCCCCCCceEEeC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATT 191 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~a----G~~-----~~V~l~~r~~------~~~~~i~~~g~~~~~l~~~~l~~~i~a~t 191 (420)
..||.|+|+|+-|..+|..|... |.. .+++++|+.- ..+...+..-.. . ... ....
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~-----~--~~~--~~~~ 95 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFAR-----K--DEE--KEGK 95 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHh-----h--cCc--ccCC
Confidence 36999999999999999999886 631 3788888652 001111111000 0 000 1124
Q ss_pred CHHHhcc--CCcEEEEcc--ChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 192 DAKTALL--GADYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 192 d~~eal~--~aDiVIlaV--p~~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
++.|+++ ++|++|=+. +.-..+++++.+..+. +..+|..++|-..
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 144 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSN-ERPIIFALSNPTS 144 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC-CCCEEEECCCcCC
Confidence 8999999 889998655 4566888888887765 4668888898654
No 388
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.11 E-value=0.12 Score=51.25 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=56.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~--aTVt~chs~T----------------------------~~l~~~~~~ADIvV 208 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGEN--CTVTTVHSAT----------------------------RDLADYCSKADILV 208 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 368999999 5789999999999887 8999875421 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+....+ +. ..+++++++||++
T Consensus 209 sAvGkp~~---i~--~~~ik~gaiVIDV 231 (294)
T PRK14187 209 AAVGIPNF---VK--YSWIKKGAIVIDV 231 (294)
T ss_pred EccCCcCc---cC--HHHcCCCCEEEEe
Confidence 99985543 11 3567789999886
No 389
>PRK07411 hypothetical protein; Validated
Probab=94.11 E-value=0.17 Score=52.27 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=56.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCCC----------------CCCCCCCC-ce
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRY----------------FPEQKLPE-NV 187 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~~----------------l~~~~l~~-~i 187 (420)
...||.|||+|.+|+.++..|+.+|. .+++++|.+.-....++++-+ .... .|...+.. ..
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 35699999999999999999999996 588888876322212221100 0000 11111100 00
Q ss_pred EEe-CCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700 188 IAT-TDAKTALLGADYCLHAMPVQFSSSFLEGIS 220 (420)
Q Consensus 188 ~a~-td~~eal~~aDiVIlaVp~~~l~~vl~~i~ 220 (420)
..+ .+..+.+.++|+||.|+-....+.++.++.
T Consensus 116 ~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 116 RLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred ccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111 123455789999999998777777676654
No 390
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=2 Score=41.04 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=54.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..|.+++||.|..|.+...+....+ +... +..|++++++.+.+.-. .| .. |.+...+-.+++|
T Consensus 9 ~~v~~~~vgtgrl~ra~~~ra~h~~--~~cs~i~srS~~~a~~LaE~~~---------a~-p~----d~~~~ael~~~vf 72 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRADHVV--VACSAISSRSRDRAQNLAETYV---------AP-PL----DVAKSAELLLLVF 72 (289)
T ss_pred eeeEEEEeecchHHHHHHHHhcchh--eeehhhhhcCHHHHhhchhccC---------CC-cc----chhhChhhhceEE
Confidence 3579999999999998554444333 2222 23577777766555311 01 11 2222223357888
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
.-+|...+..+..... ..++++++.++ |..
T Consensus 73 v~vpd~~~s~vaa~~~--~rpg~iv~HcS-ga~ 102 (289)
T COG5495 73 VDVPDALYSGVAATSL--NRPGTIVAHCS-GAN 102 (289)
T ss_pred ecchHHHHHHHHHhcc--cCCCeEEEEcc-CCC
Confidence 8899875544443322 34789999887 443
No 391
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.07 E-value=0.15 Score=48.89 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=53.9
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CC----------------CCCCCCCC---CCceE
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NC----------------RYFPEQKL---PENVI 188 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~----------------~~l~~~~l---~~~i~ 188 (420)
||.|||+|.+|+.++..|+..|. .+++++|.+.-....++++-+ .. +..|+..+ ...+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 68999999999999999999986 578888876422222221100 00 00111111 01110
Q ss_pred EeCC-HHHhccCCcEEEEccChhhHHHHHHHhhh
Q 014700 189 ATTD-AKTALLGADYCLHAMPVQFSSSFLEGISD 221 (420)
Q Consensus 189 a~td-~~eal~~aDiVIlaVp~~~l~~vl~~i~~ 221 (420)
-..+ .++.+++.|+||.|+-....+..+.+..-
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~ 113 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLI 113 (234)
T ss_pred hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 0011 23457789999999887776666666543
No 392
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.07 E-value=0.69 Score=45.73 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..||.|+|+|.+|+.+|..|+.+|. ..|+++|.+.
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCc
Confidence 4689999999999999999999995 5899998664
No 393
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=94.07 E-value=2.8 Score=41.16 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=91.0
Q ss_pred CceEEeCCHHHhccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE
Q 014700 185 ENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS 263 (420)
Q Consensus 185 ~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~ 263 (420)
-++++++|-.|+++++|++|+-+|--. ...+++.+.++++++.+|.+... +.+- .+...+.. ++.. ++.+.+
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCT-Ipt~---~ly~ilE~-l~R~--DvgVsS 197 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACT-IPTT---KFAKIFED-LGRE--DLNVTS 197 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEecccc-CChH---HHHHHHHh-hCcc--cCCeec
Confidence 367888888899999999999999644 67899999999999998865442 4432 23334433 3432 222221
Q ss_pred C-cccHHHHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEc-CChhHH--HHHHHHHHHHHHHHHHHHhcc-----c
Q 014700 264 G-PSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS-SDVTGV--EIAGALKNVLAIAAGIVVGMN-----L 334 (420)
Q Consensus 264 G-P~~a~ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~--e~~~alkNv~Ai~~G~~~gl~-----l 334 (420)
- |.-.-+. .++ ..+.-+-.+++..+++.++.++.+...+.. .|+.+. .+++++--+ ..+|+++-.. +
T Consensus 198 ~HPaaVPgt-~~q-~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv--~~aGiL~Y~~~~t~Il 273 (340)
T TIGR01723 198 YHPGCVPEM-KGQ-VYIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAI--VYAGLLAYRDAVTKIL 273 (340)
T ss_pred cCCCCCCCC-CCc-eEeecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 1 1111110 011 111112246788999999999887666553 344332 122222111 1123332221 1
Q ss_pred ch--hHHHHHHHHHHHHHHHHHHHcCCC
Q 014700 335 GN--NSMAALVAQGCSEIRWLATKMGAK 360 (420)
Q Consensus 335 g~--N~~~al~~~~~~E~~~lA~a~Gi~ 360 (420)
+- ...-..+...+.-+..|-+..|++
T Consensus 274 gAP~~miq~qa~eaL~tmasLme~~GI~ 301 (340)
T TIGR01723 274 GAPADFAQMMADEALTQIHNLMEEKGID 301 (340)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 11 112233455667777777888875
No 394
>PRK09242 tropinone reductase; Provisional
Probab=94.05 E-value=0.57 Score=44.46 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=35.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.+++.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~ 51 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLG--ADVLIVARDADALAQARD 51 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 468999996 899999999999998 899999999877665544
No 395
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.04 E-value=0.08 Score=40.56 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=26.9
Q ss_pred EEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 132 IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
|||+|.-|.+.|..|+++| ++|+++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCcc
Confidence 8999999999999999998 99999998763
No 396
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.03 E-value=0.13 Score=50.60 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=55.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~--AtVtichs~T----------------------------~nl~~~~~~ADIvI 205 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERH--ATVTIAHSRT----------------------------ADLAGEVGRADILV 205 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 478999999 5789999999999887 7999874321 25667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+.-..+ +. ..+++++++||++
T Consensus 206 ~AvGk~~~---i~--~~~ik~gaiVIDv 228 (282)
T PRK14182 206 AAIGKAEL---VK--GAWVKEGAVVIDV 228 (282)
T ss_pred EecCCcCc---cC--HHHcCCCCEEEEe
Confidence 99985432 11 4567899999886
No 397
>PRK09186 flagellin modification protein A; Provisional
Probab=94.00 E-value=0.5 Score=44.59 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=36.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
..++|.|.|+ |.+|.++|..|++.| ++|.+.+|+++..+.+.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~ 46 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG--GIVIAADIDKEALNELLE 46 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEecChHHHHHHHH
Confidence 3578999996 899999999999998 899999999876655543
No 398
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.99 E-value=0.12 Score=59.13 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=32.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..+||+|||+|.-|.+.|..|++.| |+|+++++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCC
Confidence 4689999999999999999999999 9999998763
No 399
>PLN02214 cinnamoyl-CoA reductase
Probab=93.99 E-value=0.12 Score=51.84 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=47.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH--HHHhcCCCCCCCCCCC-CCceEEeCCHHHhccCCcE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS--INEKHCNCRYFPEQKL-PENVIATTDAKTALLGADY 202 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~--i~~~g~~~~~l~~~~l-~~~i~a~td~~eal~~aDi 202 (420)
+|+|.|.|+ |.+|+.++..|.++| ++|++.+|+.+.... +.+.... .+.+.+ ...+.-..+.+++++++|+
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~d~ 84 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG--YTVKGTVRNPDDPKNTHLRELEGG---KERLILCKADLQDYEALKAAIDGCDG 84 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCchhhhHHHHHHhhCC---CCcEEEEecCcCChHHHHHHHhcCCE
Confidence 578999997 999999999999998 999999987653211 1111000 000000 0011111245566788999
Q ss_pred EEEccC
Q 014700 203 CLHAMP 208 (420)
Q Consensus 203 VIlaVp 208 (420)
||.+..
T Consensus 85 Vih~A~ 90 (342)
T PLN02214 85 VFHTAS 90 (342)
T ss_pred EEEecC
Confidence 998763
No 400
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.98 E-value=0.11 Score=55.92 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=36.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
..++|.|.|+ |.+|.+++..|++.| ++|++++|+.+..+.+.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence 3468999996 999999999999998 999999999887665543
No 401
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=93.98 E-value=0.051 Score=46.35 Aligned_cols=65 Identities=25% Similarity=0.288 Sum_probs=46.2
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhcc--ccch--hhh-hhc-ccCCCCcccccccc
Q 014700 328 IVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGD--IML-TCF-VNLSRNRTVGVRLG 392 (420)
Q Consensus 328 ~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~--g~gd--l~~-t~~-~~~sRn~~~G~~l~ 392 (420)
....+|+.+|........++.|+..++++.|++++++++.. +.|. .+. ... ....+++..+|.+.
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~ 72 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLD 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhH
Confidence 34556788899999999999999999999999999999842 3322 111 122 24578888888653
No 402
>PRK07588 hypothetical protein; Provisional
Probab=93.98 E-value=0.061 Score=54.81 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
|+|.|||+|..|.++|..|++.| ++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence 58999999999999999999998 89999987653
No 403
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.48 Score=44.44 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.++++.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 48 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG--WDLALVARSQDALEALAA 48 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3568999996 999999999999998 899999999876555443
No 404
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.96 E-value=0.19 Score=52.25 Aligned_cols=34 Identities=29% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.++|.|+|+|.+|.++|..|++.| ++|+++|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCC
Confidence 468999999999999999999999 8999999764
No 405
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.95 E-value=0.13 Score=54.08 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=31.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.++|+|||+|.-|.+.|..|+++| |+|+++.+.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~ 156 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVA 156 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcC
Confidence 489999999999999999999999 9999998765
No 406
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.94 E-value=0.18 Score=53.47 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~--~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
.++|.|+|.|..|.++|..|.+.| ++|+++|.... ..+.+.+.+.... +..-....+.+.++|+||
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~~~~L~~~~~~~~----------~~~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPNLAALRAELPDAE----------FVGGPFDPALLDGVDLVA 74 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchhHHHHHhhcCCcE----------EEeCCCchhHhcCCCEEE
Confidence 468999999999999999999998 89999996542 2234444321111 111111223456789999
Q ss_pred Ec
Q 014700 205 HA 206 (420)
Q Consensus 205 la 206 (420)
..
T Consensus 75 ~s 76 (498)
T PRK02006 75 LS 76 (498)
T ss_pred EC
Confidence 86
No 407
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.94 E-value=0.12 Score=52.22 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=55.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|..+|..|.+.+ ..|+++.... .++++..+.||+||
T Consensus 213 ~GK~vvVIGRS~iVGkPla~LL~~~~--ATVTicHs~T----------------------------~nl~~~~~~ADIvI 262 (345)
T PLN02897 213 AGKNAVVIGRSNIVGLPMSLLLQRHD--ATVSTVHAFT----------------------------KDPEQITRKADIVI 262 (345)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHHhhCCEEE
Confidence 478999999 5788999999999887 7998875321 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+.-..+ +. ..+++++++||++
T Consensus 263 sAvGkp~~---v~--~d~vk~GavVIDV 285 (345)
T PLN02897 263 AAAGIPNL---VR--GSWLKPGAVVIDV 285 (345)
T ss_pred EccCCcCc---cC--HHHcCCCCEEEEc
Confidence 99985543 11 4567899999886
No 408
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.94 E-value=0.47 Score=44.17 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=35.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.++|.|.|+ |.+|..++..|++.| ++|++++|+++..+.+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG--AKVVIYDSNEEAAEALA 46 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChhHHHHHH
Confidence 468999996 999999999999998 89999999987655443
No 409
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.93 E-value=0.48 Score=44.64 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.++|.|.|+ |.+|..++..|++.| ++|.+++|+++..+.+.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEG--AKVVIADLNDEAAAAAA 45 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 468999994 999999999999998 89999999987665544
No 410
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.93 E-value=0.19 Score=52.69 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH 172 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g 172 (420)
.+||.|||.|..|.+.|..|.+.| ++|+++|+.+.....+.+.|
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~~~~l~~~g 52 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGG--AEVIAWDDNPASRAKAAAAG 52 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEECCChhhHHHHHhcC
Confidence 468999999999999999999998 89999997754433444433
No 411
>PTZ00188 adrenodoxin reductase; Provisional
Probab=93.93 E-value=0.1 Score=55.31 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=50.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hcCCCCeEEEEeCCHHH--------------HHHHHHhcCCCCCCCCCCCCCceEEe
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAV--------------CQSINEKHCNCRYFPEQKLPENVIAT 190 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La-~aG~~~~V~l~~r~~~~--------------~~~i~~~g~~~~~l~~~~l~~~i~a~ 190 (420)
..+||+|||+|.-|.+.|..|+ +.| ++|++|++.+.. .+.+.+.-......+++.+..++.+-
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG 115 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG 115 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence 4579999999999999999775 456 999999987531 11110000000000111222234433
Q ss_pred C--CHHHhccCCcEEEEccChhh
Q 014700 191 T--DAKTALLGADYCLHAMPVQF 211 (420)
Q Consensus 191 t--d~~eal~~aDiVIlaVp~~~ 211 (420)
. +.++.....|.||+++-...
T Consensus 116 ~Dvt~eeL~~~YDAVIlAtGA~~ 138 (506)
T PTZ00188 116 VDLKMEELRNHYNCVIFCCGASE 138 (506)
T ss_pred CccCHHHHHhcCCEEEEEcCCCC
Confidence 3 36676678999999987553
No 412
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=93.93 E-value=0.56 Score=44.35 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=35.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
|+|.|+|+ |.+|.+++..|++.| ++|.+.+|+++.++.+..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG--HKVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 68999995 999999999999998 899999999876665543
No 413
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.88 E-value=0.13 Score=50.70 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=55.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHh--cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVAN--KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~--aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
..++|+||| .+.+|.++|..|.+ .+ ..|+++.... .++++.++.||+
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~~~--atVtvchs~T----------------------------~~l~~~~k~ADI 206 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRPIGLLLTRRSEN--ATVTLCHTGT----------------------------RDLAAHTRRADI 206 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHhhccCC--CEEEEeCCCC----------------------------CCHHHHHHhCCE
Confidence 368999999 57899999999997 45 7888875421 156777899999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
||.|+....+ +. ..+++++++||++
T Consensus 207 vV~AvGkp~~---i~--~~~ik~GavVIDv 231 (284)
T PRK14193 207 IVAAAGVAHL---VT--ADMVKPGAAVLDV 231 (284)
T ss_pred EEEecCCcCc---cC--HHHcCCCCEEEEc
Confidence 9999985542 11 4567899999886
No 414
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.88 E-value=0.14 Score=50.54 Aligned_cols=72 Identities=18% Similarity=0.319 Sum_probs=55.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++..+.||+||
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~--ATVtichs~T----------------------------~~L~~~~~~ADIvV 207 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKEN--CSVTICHSKT----------------------------HNLSSITSKADIVV 207 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 5788999999999887 8999775321 15677788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+.-..+ +. ..+++++++||++
T Consensus 208 ~AvGkp~~---i~--~~~vk~GavVIDv 230 (288)
T PRK14171 208 AAIGSPLK---LT--AEYFNPESIVIDV 230 (288)
T ss_pred EccCCCCc---cC--HHHcCCCCEEEEe
Confidence 99984432 11 3567899999886
No 415
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.88 E-value=0.12 Score=52.51 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=56.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..++|+||| ...+|.++|..|.+.+ ..|+++.... .++++.++.||+||
T Consensus 230 ~GK~vvVIGRS~iVGkPLa~LL~~~~--ATVTicHs~T----------------------------~nl~~~~r~ADIVI 279 (364)
T PLN02616 230 KGKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT----------------------------KNPEEITREADIII 279 (364)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCC--CeEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence 468999999 6889999999999987 8999874321 15677789999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+....+ +. ..+++++++||++
T Consensus 280 sAvGkp~~---i~--~d~vK~GAvVIDV 302 (364)
T PLN02616 280 SAVGQPNM---VR--GSWIKPGAVVIDV 302 (364)
T ss_pred EcCCCcCc---CC--HHHcCCCCEEEec
Confidence 99985543 11 4567899999886
No 416
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=93.85 E-value=0.25 Score=47.96 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=64.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc----CCC-----CeEEEEeCCH------HHHHHHHHhcCCCCCCCCCCCCCceEEeC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATT 191 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~a----G~~-----~~V~l~~r~~------~~~~~i~~~g~~~~~l~~~~l~~~i~a~t 191 (420)
..||.|+|+|+-|..+|..|.+. |.. .+++++|+.- +.+...++...... .......
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~--------~~~~~~~ 96 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKT--------NPEKDWG 96 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSS--------STTT--S
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccC--------ccccccc
Confidence 46999999999999999999988 842 4788888761 11111111100000 0011124
Q ss_pred CHHHhccCC--cEEEEc--cChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 192 DAKTALLGA--DYCLHA--MPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 192 d~~eal~~a--DiVIla--Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
++.|+++++ |++|=+ ++.-..+++++.+.++.+ ..+|..++|-..
T Consensus 97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e-rPIIF~LSNPt~ 145 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE-RPIIFPLSNPTP 145 (255)
T ss_dssp SHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS-SEEEEE-SSSCG
T ss_pred CHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC-CCEEEECCCCCC
Confidence 889999988 999865 456678999999888653 567778888654
No 417
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.84 E-value=0.08 Score=53.45 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.+++|+|||+|.+|.+.|..|++.| ++|+++++.+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCc
Confidence 3679999999999999999999999 7999998765
No 418
>PRK07538 hypothetical protein; Provisional
Probab=93.84 E-value=0.068 Score=55.06 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=31.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
|+|.|||+|..|.++|..|+++| ++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCc
Confidence 68999999999999999999998 89999998753
No 419
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.83 E-value=0.13 Score=51.38 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=53.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCC----------------CCCCCCC---CCceE
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCR----------------YFPEQKL---PENVI 188 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~----------------~l~~~~l---~~~i~ 188 (420)
||.|||+|.+|+.++..|+..|. .+++++|.+.-....++++-. ... ..|...+ ...+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 68999999999999999999996 588898876422222221100 000 0011111 01111
Q ss_pred EeCCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGIS 220 (420)
Q Consensus 189 a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~ 220 (420)
-.....+.+++.|+||.|+-....+..+.++.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c 111 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMC 111 (312)
T ss_pred CccchHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 00112355789999999998766666665553
No 420
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=93.83 E-value=0.51 Score=44.93 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=35.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
|+|.|.|+ |.+|.++|..|++.| ++|.+.+|+++..+.+.+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~ 42 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG--ARVVISSRNEENLEKALK 42 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 68999996 889999999999998 899999999876655443
No 421
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.81 E-value=0.12 Score=51.85 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=34.5
Q ss_pred cchhhcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 120 KTDILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 120 ~~~~~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
++.+...+|||.|.|+ |-+|+.++..|.+.| ++|++++|..
T Consensus 8 ~~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~ 49 (348)
T PRK15181 8 RTKLVLAPKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFS 49 (348)
T ss_pred hhcccccCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence 3444555689999996 999999999999998 8999999854
No 422
>PLN03075 nicotianamine synthase; Provisional
Probab=93.80 E-value=0.64 Score=46.15 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=64.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHh---ccCCc
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTA---LLGAD 201 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~ea---l~~aD 201 (420)
...+|..||.|..|..-...++....+..++.+|.+++.++..++.-.. ...+..++++. .|..+. ..+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-----~~gL~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-----DPDLSKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-----ccCccCCcEEEECchhhcccccCCcC
Confidence 4579999999998876555554432224799999999876655542100 01112223322 232221 36789
Q ss_pred EEEEccC----hhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 202 YCLHAMP----VQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 202 iVIlaVp----~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
+|++.+= ...-+.+++.+.+++++|.+++.-
T Consensus 198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999852 145678899999999998877643
No 423
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.76 E-value=0.067 Score=55.00 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=34.1
Q ss_pred hcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700 124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (420)
Q Consensus 124 ~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~ 164 (420)
+..+|||.|+|+ |.+|..++..|.+.| ++|++++|+...
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G--~~V~~l~R~~~~ 96 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRG--YNVVAVAREKSG 96 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEEechhh
Confidence 345689999996 999999999999998 999999998753
No 424
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.69 E-value=0.15 Score=50.21 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=55.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
..++|+||| ...+|.++|..|.+.|. +..|+++... +.++++.++.||+
T Consensus 152 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ADI 203 (287)
T PRK14181 152 HGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ----------------------------SENLTEILKTADI 203 (287)
T ss_pred CCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC----------------------------CCCHHHHHhhCCE
Confidence 368999999 57889999999998720 1688876431 1256777899999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
||.|+....+ +. ..+++++++||++
T Consensus 204 vV~AvG~p~~---i~--~~~ik~GavVIDv 228 (287)
T PRK14181 204 IIAAIGVPLF---IK--EEMIAEKAVIVDV 228 (287)
T ss_pred EEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence 9999985542 11 4567899999887
No 425
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.69 E-value=0.52 Score=43.96 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=35.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
++|.|+|+ |.+|..++..|++.| ++|.+.+|+++..+.+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG--YKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC--CEEEEeeCCHHHHHHHHH
Confidence 68999996 999999999999988 899999999876655543
No 426
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.67 E-value=0.1 Score=51.45 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=29.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
.|+|||+|..|.+.|..|++.| ++|+++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeec
Confidence 4899999999999999999998 999999987
No 427
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.66 E-value=0.23 Score=49.16 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=28.3
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
||.|||+|.+|+.++..|+..|. .+++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence 68999999999999999999996 478887755
No 428
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.63 E-value=0.065 Score=52.02 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=31.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (420)
Q Consensus 129 kI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~ 164 (420)
+|.|+|+ |.+|..++..|.+.| ++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g--~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS--VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC--CcEEEEeCCCcc
Confidence 5889997 999999999999998 999999998764
No 429
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.57 E-value=0.08 Score=54.25 Aligned_cols=36 Identities=28% Similarity=0.561 Sum_probs=32.3
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
...++|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~ 51 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQP 51 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCC
Confidence 33578999999999999999999998 9999999765
No 430
>PRK06182 short chain dehydrogenase; Validated
Probab=93.55 E-value=0.16 Score=48.84 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=36.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.++|.|.|+ |.+|.+++..|++.| ++|++.+|+++.++.+..
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQG--YTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh
Confidence 468999996 999999999999998 999999999887666544
No 431
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.54 E-value=0.55 Score=47.96 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=56.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHH-hcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 128 NKVVVLGG-GSFGTAMAAHVA-NKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La-~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
|||+|||+ |.+|..|-..|. +..+. .++.++..... .|... .+.+..+ .+...++. +...+.|++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s-------~g~~~-~f~~~~~--~v~~~~~~-~~~~~vDivf 69 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQL-------GQAAP-SFGGTTG--TLQDAFDI-DALKALDIII 69 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhh-------CCCcC-CCCCCcc--eEEcCccc-ccccCCCEEE
Confidence 58999997 999999999998 54432 24445543321 11111 1112111 22222222 2467899999
Q ss_pred EccChhhHHHHHHHhhhcCCCC--CeEEEecc
Q 014700 205 HAMPVQFSSSFLEGISDYVDPG--LPFISLSK 234 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~--~iVVs~sn 234 (420)
+|.+....+++...+.. .| .+||+.+.
T Consensus 70 fa~g~~~s~~~~p~~~~---aG~~~~VIDnSS 98 (366)
T TIGR01745 70 TCQGGDYTNEIYPKLRE---SGWQGYWIDAAS 98 (366)
T ss_pred EcCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 99998877766665543 46 56777664
No 432
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.50 E-value=0.092 Score=53.72 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=31.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
.++|.|||+|..|.++|..|+++| ++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 568999999999999999999999 999999987
No 433
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.47 E-value=0.091 Score=53.56 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAG--LSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCC
Confidence 468999999999999999999998 8999999864
No 434
>PLN02650 dihydroflavonol-4-reductase
Probab=93.46 E-value=0.19 Score=50.40 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=47.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCC-CCceEEeCCHHHhccCCcEEE
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l-~~~i~a~td~~eal~~aDiVI 204 (420)
.++|.|.|+ |-+|+.++..|++.| ++|++++|+.+..+.+..........+.+.+ ...+.-....+++++++|.||
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG--YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC--CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 568999996 999999999999998 8999998886554433221000000000000 001111123456677899998
Q ss_pred Ecc
Q 014700 205 HAM 207 (420)
Q Consensus 205 laV 207 (420)
.+.
T Consensus 83 H~A 85 (351)
T PLN02650 83 HVA 85 (351)
T ss_pred EeC
Confidence 764
No 435
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.46 E-value=0.19 Score=49.54 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=55.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~----aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a 200 (420)
..++|+||| ...+|.++|..|.+ .+ ..|+.+.... .++++.++.|
T Consensus 156 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--AtVt~~hs~t----------------------------~~l~~~~~~A 205 (286)
T PRK14184 156 AGKKAVVVGRSNIVGKPLALMLGAPGKFAN--ATVTVCHSRT----------------------------PDLAEECREA 205 (286)
T ss_pred CCCEEEEECCCccchHHHHHHHhCCcccCC--CEEEEEeCCc----------------------------hhHHHHHHhC
Confidence 468999999 57899999999998 44 6888776432 1566778899
Q ss_pred cEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|+||.|+....+ +. ..+++++++||++.
T Consensus 206 DIVI~AvG~p~l---i~--~~~vk~GavVIDVG 233 (286)
T PRK14184 206 DFLFVAIGRPRF---VT--ADMVKPGAVVVDVG 233 (286)
T ss_pred CEEEEecCCCCc---CC--HHHcCCCCEEEEee
Confidence 999999976543 11 34567899998863
No 436
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.43 E-value=0.21 Score=49.48 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=54.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA 200 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~----aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a 200 (420)
..++|+||| ...+|.++|..|.+ .+ ..|+....... ++++.++.|
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--atVt~~hs~t~----------------------------~l~~~~~~A 207 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANLMLQKLKESN--CTVTICHSATK----------------------------DIPSYTRQA 207 (295)
T ss_pred CCCEEEEECCCCcchHHHHHHHHhccccCC--CEEEEEeCCch----------------------------hHHHHHHhC
Confidence 368999999 57899999999987 45 68887764321 456778899
Q ss_pred cEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700 201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
|+||.|+....+ +. ..+++++.+||++.
T Consensus 208 DIvI~Avg~~~l---i~--~~~vk~GavVIDVg 235 (295)
T PRK14174 208 DILIAAIGKARF---IT--ADMVKPGAVVIDVG 235 (295)
T ss_pred CEEEEecCccCc---cC--HHHcCCCCEEEEee
Confidence 999999975432 11 34568899998874
No 437
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.43 E-value=0.22 Score=49.63 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=33.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhc
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKH 172 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g 172 (420)
..++|+|+|+|-+|+ ||..++++ .+++|+++++.. ++-+.++..|
T Consensus 181 pG~~vgI~GlGGLGh-~aVq~AKA-MG~rV~vis~~~~kkeea~~~LG 226 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGH-MAVQYAKA-MGMRVTVISTSSKKKEEAIKSLG 226 (360)
T ss_pred CCcEEEEecCcccch-HHHHHHHH-hCcEEEEEeCCchhHHHHHHhcC
Confidence 568999999999886 77777777 349999999986 3444444433
No 438
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=93.42 E-value=0.45 Score=46.14 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=64.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCC---------CeEEEEeCCHH------HHHHHHHhcCCCCCCCCCCCCCceEEeCC
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQ---------LKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATTD 192 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~---------~~V~l~~r~~~------~~~~i~~~g~~~~~l~~~~l~~~i~a~td 192 (420)
.||.|+|+|+-|..+|..|...+.. .+++++|+.-- .....++.- .+|... -....+
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~--~~~~~~------~~~~~~ 97 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHL--ARFANP------ERESGD 97 (254)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHH--HHHcCc------ccccCC
Confidence 6999999999999999999886521 16777776520 011111100 000000 011248
Q ss_pred HHHhcc--CCcEEEEcc--ChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700 193 AKTALL--GADYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE 237 (420)
Q Consensus 193 ~~eal~--~aDiVIlaV--p~~~l~~vl~~i~~~l~~~~iVVs~snGi~ 237 (420)
+.|+++ ++|++|=.. |.-..+++++.+..+. +..+|..++|-..
T Consensus 98 L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 145 (254)
T cd00762 98 LEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEIN-ERPVIFALSNPTS 145 (254)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcC-CCCEEEECCCcCC
Confidence 999999 899998533 4556888888887764 4567888888654
No 439
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.40 E-value=0.099 Score=53.07 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhc---CCCCeEEEEeCC
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANK---KSQLKVYMLMRD 161 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~a---G~~~~V~l~~r~ 161 (420)
.+++|.|||+|..|.++|..|++. | ++|+++++.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 356899999999999999999997 8 999999984
No 440
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.68 Score=43.37 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=35.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.++|.|.|+ |.+|..++..|++.| ++|.+.+|+++..+.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG--ATVAFNDGLAAEARELA 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 478999996 999999999999998 89999999987665544
No 441
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.37 E-value=0.67 Score=45.46 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=36.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.++|.|.|+ |.+|.++|..|++.| ++|.+.+|+.+..+.+.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G--~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG--ATVVAVARREDLLDAVAD 82 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 368999996 999999999999998 999999999877666544
No 442
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.36 E-value=0.095 Score=53.24 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=30.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.+|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAG--ASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCC
Confidence 47999999999999999999998 8999999864
No 443
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.34 E-value=0.091 Score=54.08 Aligned_cols=35 Identities=31% Similarity=0.581 Sum_probs=30.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
|||.|||+|.-|.++|..|+++|+ .+|+++++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~-~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSH-LNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEecCCc
Confidence 689999999999999999999871 49999998754
No 444
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.34 E-value=0.21 Score=48.29 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=36.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
+++|.|.|+ |.+|.++|..|++.| ++|++.+|+++..+.+.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G--~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG--WRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 467999997 999999999999998 899999999887776654
No 445
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.30 E-value=0.76 Score=43.09 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=35.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.++|.|+|+ |.+|..++..|++.| ++|++.+|+++..+.+..
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G--~~V~~~~r~~~~~~~~~~ 47 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEG--ARVVVTDRNEEAAERVAA 47 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 468999996 999999999999998 899999999876655443
No 446
>PRK01581 speE spermidine synthase; Validated
Probab=93.29 E-value=2.7 Score=43.05 Aligned_cols=105 Identities=20% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCC-CCceEE-eCCHHHhc----cC
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIA-TTDAKTAL----LG 199 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l-~~~i~a-~td~~eal----~~ 199 (420)
+..+|.|||+|. |.++...| +.....+|++++.+++.++..++. .....+....+ .+++++ ..|..+.+ ..
T Consensus 150 ~PkrVLIIGgGd-G~tlrelL-k~~~v~~It~VEIDpeVIelAr~~-~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGD-GLALREVL-KYETVLHVDLVDLDGSMINMARNV-PELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCEEEEECCCH-HHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhc-cccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 457999999884 44444444 432125899999999877666541 11000111111 224443 34444332 34
Q ss_pred CcEEEEccChh--------hHHHHHHHhhhcCCCCCeEEEec
Q 014700 200 ADYCLHAMPVQ--------FSSSFLEGISDYVDPGLPFISLS 233 (420)
Q Consensus 200 aDiVIlaVp~~--------~l~~vl~~i~~~l~~~~iVVs~s 233 (420)
.|+||+-.+.. ...++++.+...|+++.+++.-.
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 69999987642 24678888999999998876543
No 447
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.24 E-value=0.26 Score=51.94 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=31.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..++|+|||+|..|.+.|..|++.| ++|+++++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 3579999999999999999999998 8999998754
No 448
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.23 E-value=0.72 Score=43.33 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+++..+.+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g--~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG--ASVVVADINAEGAERVA 47 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 468999997 999999999999998 89999999876555443
No 449
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.22 E-value=0.11 Score=53.07 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=30.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 58999999999999999999998 9999999653
No 450
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.18 E-value=0.11 Score=52.29 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=30.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..|.|||+|.+|.++|..|++.| ++|+++++..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--CeEEEEeccc
Confidence 36999999999999999999998 8999999864
No 451
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.16 E-value=0.91 Score=43.54 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=35.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.++|.|.|+ |.+|.+++..|++.| ++|.+++|+++..+.+.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAG--AAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 479999996 899999999999998 89999999987655444
No 452
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.15 E-value=0.1 Score=54.94 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=32.6
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
...++|+|||+|.-|.+.|..|.+.| ++|+++.+++.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 34579999999999999999999998 89999988653
No 453
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.14 E-value=0.25 Score=56.60 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=31.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..+||+|||+|.-|.+.|..|++.| ++|+++++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEeccc
Confidence 4679999999999999999999998 9999998753
No 454
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.07 E-value=0.23 Score=50.22 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=64.9
Q ss_pred cchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700 120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG 199 (420)
Q Consensus 120 ~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~ 199 (420)
.++++...+++.|.|.|-.|.-+|.+|...| .+|.++..+|-. .+...- . +.++. ..+++.+.
T Consensus 202 aTn~liaGK~vVV~GYG~vGrG~A~~~rg~G--A~ViVtEvDPI~--AleA~M------d------Gf~V~-~m~~Aa~~ 264 (420)
T COG0499 202 ATNVLLAGKNVVVAGYGWVGRGIAMRLRGMG--ARVIVTEVDPIR--ALEAAM------D------GFRVM-TMEEAAKT 264 (420)
T ss_pred hhceeecCceEEEecccccchHHHHHhhcCC--CeEEEEecCchH--HHHHhh------c------CcEEE-EhHHhhhc
Confidence 3577888899999999999999999999888 899999998744 332210 1 12333 35778889
Q ss_pred CcEEEEccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700 200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS 231 (420)
Q Consensus 200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs 231 (420)
+|++|.++-...+-. .+. ...++++.++.+
T Consensus 265 gDifiT~TGnkdVi~-~eh-~~~MkDgaIl~N 294 (420)
T COG0499 265 GDIFVTATGNKDVIR-KEH-FEKMKDGAILAN 294 (420)
T ss_pred CCEEEEccCCcCccC-HHH-HHhccCCeEEec
Confidence 999999998655321 122 233566666544
No 455
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.07 E-value=0.79 Score=45.89 Aligned_cols=90 Identities=19% Similarity=0.194 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
..+|.|+|+|.+|...+..+++ .| ..+|++.++++++.+.+++.+.. + ...+..+. ..+|+||=
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~~~~~--~-----------~~~~~~~~-~g~d~viD 228 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSFADET--Y-----------LIDDIPED-LAVDHAFE 228 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhhcCce--e-----------ehhhhhhc-cCCcEEEE
Confidence 4689999999999988877765 33 25799999998877766542210 0 01112221 25899999
Q ss_pred ccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700 206 AMPVQFSSSFLEGISDYVDPGLPFIS 231 (420)
Q Consensus 206 aVp~~~l~~vl~~i~~~l~~~~iVVs 231 (420)
++........++.....++++..++.
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 98743223334444455555554443
No 456
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.06 E-value=0.24 Score=49.11 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=54.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
..++|+||| ...+|.++|..|.+.|. +..|+++.... .++++.++.||+
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T----------------------------~~l~~~~~~ADI 211 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS----------------------------KNLARHCQRADI 211 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC----------------------------cCHHHHHhhCCE
Confidence 368999999 58899999999998720 16888764321 156777899999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
||.|+.-..+ +. ..+++++++||++
T Consensus 212 vVsAvGkp~~---i~--~~~ik~gavVIDv 236 (297)
T PRK14168 212 LIVAAGVPNL---VK--PEWIKPGATVIDV 236 (297)
T ss_pred EEEecCCcCc---cC--HHHcCCCCEEEec
Confidence 9999874442 11 4567899999887
No 457
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.05 E-value=0.21 Score=48.99 Aligned_cols=72 Identities=25% Similarity=0.299 Sum_probs=56.0
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700 126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL 204 (420)
Q Consensus 126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI 204 (420)
..+++.|||.+ -+|.+||..|..++ +.|+++.... .++.+..+.||++|
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~n--aTVtvcHs~T----------------------------~~l~~~~k~ADIvv 204 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNAN--ATVTVCHSRT----------------------------KDLASITKNADIVV 204 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCC--CEEEEEcCCC----------------------------CCHHHHhhhCCEEE
Confidence 37899999975 57999999999987 8999886432 15667788999999
Q ss_pred EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 205 HAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 205 laVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
.|+--..+-. .++++++.++|.+
T Consensus 205 ~AvG~p~~i~-----~d~vk~gavVIDV 227 (283)
T COG0190 205 VAVGKPHFIK-----ADMVKPGAVVIDV 227 (283)
T ss_pred EecCCccccc-----cccccCCCEEEec
Confidence 9997543211 5778899999886
No 458
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.03 E-value=0.13 Score=52.69 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=31.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc--CCCCeEEEEeCCH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDP 162 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~a--G~~~~V~l~~r~~ 162 (420)
+..|.|||+|.+|.++|..|++. | ++|+++++..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g--~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPG--ARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCC--CeEEEEeCCC
Confidence 35899999999999999999998 7 8999999874
No 459
>PRK08013 oxidoreductase; Provisional
Probab=93.01 E-value=0.11 Score=53.22 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=31.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
.+|.|||+|..|.++|..|++.| ++|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence 58999999999999999999998 99999998754
No 460
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.99 E-value=0.23 Score=49.85 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=35.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
..|||.|.| +|-+|+.++..|++.| ++|++.+|+.+..+.+.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~ 51 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDPAKSLHLL 51 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence 367999999 5999999999999998 89999998876555443
No 461
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=92.98 E-value=0.64 Score=41.72 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=50.2
Q ss_pred CCeEEEEc-c-cHHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc
Q 014700 127 TNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL 197 (420)
Q Consensus 127 ~mkI~IIG-a-GamG~alA~~La~aG~~~~V~l~~r~~-------~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal 197 (420)
.+||++|| . +++..+++..|++-| .+|++..... +.++..++.... -...+..++|+++++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--------~g~~i~~~~~~~e~l 71 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFG--MEVVLIAPEGLRYPPDPEVLEKAKKNAKK--------NGGKITITDDIEEAL 71 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTT--SEEEEESSGGGGGSHHHHHHHHHHHHHHH--------HTTEEEEESSHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcC--CEEEEECCCcccCCCCHHHHHHHHHHHHH--------hCCCeEEEeCHHHhc
Confidence 46999999 4 899999999999987 7898887654 122222111000 012467789999999
Q ss_pred cCCcEEEEccCh
Q 014700 198 LGADYCLHAMPV 209 (420)
Q Consensus 198 ~~aDiVIlaVp~ 209 (420)
+++|+|+.-.-.
T Consensus 72 ~~aDvvy~~~~~ 83 (158)
T PF00185_consen 72 KGADVVYTDRWQ 83 (158)
T ss_dssp TT-SEEEEESSS
T ss_pred CCCCEEEEcCcc
Confidence 999999876543
No 462
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=92.97 E-value=0.92 Score=42.91 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.++|.|.|+ |.+|.+++..|++.| ++|++++|+++..+.+.+
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~ 53 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAG--AHVLVNGRNAATLEAAVA 53 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence 578999996 999999999999998 899999999876655443
No 463
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.93 E-value=0.12 Score=52.47 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
|.+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKG--IKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCC--CeEEEecCC
Confidence 468999999999999999999998 899999975
No 464
>PRK06949 short chain dehydrogenase; Provisional
Probab=92.90 E-value=1 Score=42.59 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=36.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.++|.|.|+ |.+|.+++..|++.| ++|++.+|+++..+.+.+
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAG--AKVVLASRRVERLKELRA 51 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 478999996 999999999999998 899999999887666544
No 465
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.81 E-value=0.18 Score=52.80 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=32.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV 164 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~ 164 (420)
+|||.|+|+|.-|.++|..|.+.| ++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCc
Confidence 789999999999999999999998 999999966543
No 466
>PRK07045 putative monooxygenase; Reviewed
Probab=92.79 E-value=0.13 Score=52.43 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
..++|.|||+|..|.+.|..|+++| ++|+++++.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCc
Confidence 3468999999999999999999998 89999997763
No 467
>PRK08251 short chain dehydrogenase; Provisional
Probab=92.79 E-value=1.2 Score=41.83 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=35.6
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.+++.|.| .|.+|.+++..|++.| ++|++.+|+++..+.+..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~ 44 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG--RDLALCARRTDRLEELKA 44 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 35788999 6999999999999998 899999999877665543
No 468
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=92.74 E-value=0.41 Score=48.60 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=53.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeC---CHHHhccCCcE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATT---DAKTALLGADY 202 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~t---d~~eal~~aDi 202 (420)
+++|||||.|..|..|+..-.+-| ++|.+++.+++. +..+....... ..+ .+.+.++.||+
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG--~~v~vLdp~~~~PA~~va~~~i~~-------------~~dD~~al~ela~~~DV 65 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLG--IKVIVLDPDADAPAAQVADRVIVA-------------AYDDPEALRELAAKCDV 65 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcC--CEEEEecCCCCCchhhcccceeec-------------CCCCHHHHHHHHhhCCE
Confidence 478999999999999999988887 999999977642 22332221110 112 35566778999
Q ss_pred E---EEccChhhHHHHHHH
Q 014700 203 C---LHAMPVQFSSSFLEG 218 (420)
Q Consensus 203 V---IlaVp~~~l~~vl~~ 218 (420)
| |--||.+.++.+.+.
T Consensus 66 iT~EfE~V~~~aL~~l~~~ 84 (375)
T COG0026 66 ITYEFENVPAEALEKLAAS 84 (375)
T ss_pred EEEeeccCCHHHHHHHHhh
Confidence 8 557887777766655
No 469
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.73 E-value=0.84 Score=43.14 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=35.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.++|.|.|+ |.+|..++..|++.| ++|.+.+|+++..+++.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~ 49 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG--AAVAIADLNQDGANAVAD 49 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 468999997 999999999999998 899999999876555443
No 470
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.72 E-value=1.1 Score=44.29 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=34.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.+++.|.|+ |.+|.++|..|++.| ++|++.+|+.+..++..
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G--~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAG--AEVILPVRNRAKGEAAV 55 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 468888995 889999999999998 89999999987655443
No 471
>PRK08017 oxidoreductase; Provisional
Probab=92.70 E-value=0.28 Score=46.31 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=35.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
++|.|.|+ |.+|.+++..|++.| ++|.+.+|+++..+.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG--YRVLAACRKPDDVARMNS 44 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHhHHHHh
Confidence 47999998 999999999999998 899999999877665543
No 472
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.68 E-value=0.71 Score=48.15 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
.++|.|+|.|..|.+.|..|++.| ++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g--~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG--AEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCC
Confidence 468999999999999999999998 89999997653
No 473
>PRK06197 short chain dehydrogenase; Provisional
Probab=92.67 E-value=1.1 Score=43.89 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=34.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI 168 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i 168 (420)
.++|.|.|+ |.+|.++|..|++.| ++|++.+|+.+..+..
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G--~~vi~~~r~~~~~~~~ 56 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKG--AHVVLAVRNLDKGKAA 56 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence 468999996 999999999999998 8999999997765443
No 474
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=92.64 E-value=0.37 Score=55.00 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=66.1
Q ss_pred CccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH----------
Q 014700 94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA---------- 163 (420)
Q Consensus 94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~---------- 163 (420)
.--+|.+.--+|+. -|=. . .....-..++|+|||.|.-|.+.|..|-+.| |.|++|.|.+.
T Consensus 1759 ksie~aiid~af~e--gwm~---p--~pp~~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygip 1829 (2142)
T KOG0399|consen 1759 KSIECAIIDKAFEE--GWMK---P--CPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGIP 1829 (2142)
T ss_pred cchhhHHHHHHHHh--cCCc---c--CCcccccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecCC
Confidence 34567788888887 3652 2 2234445789999999999999999999999 99999998752
Q ss_pred -----------HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh
Q 014700 164 -----------VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209 (420)
Q Consensus 164 -----------~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~ 209 (420)
+++-+.++|++ ++....+-+. -++++..+.-|.|++|+-+
T Consensus 1830 nmkldk~vv~rrv~ll~~egi~--f~tn~eigk~----vs~d~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1830 NMKLDKFVVQRRVDLLEQEGIR--FVTNTEIGKH----VSLDELKKENDAIVLATGS 1880 (2142)
T ss_pred ccchhHHHHHHHHHHHHhhCce--EEeecccccc----ccHHHHhhccCeEEEEeCC
Confidence 12222333321 1111111111 2567777889999998754
No 475
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.63 E-value=0.13 Score=52.79 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=31.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
.||.|||+|..|.++|..|+++| ++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 68999999999999999999998 89999998753
No 476
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=92.62 E-value=0.15 Score=52.35 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=30.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD 161 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~ 161 (420)
..+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 358999999999999999999998 899999985
No 477
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.61 E-value=0.14 Score=51.71 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=29.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
.|.|||+|.+|.+.|..|++.| .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--CeEEEEeccC
Confidence 5899999999999999999998 8999998753
No 478
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.60 E-value=0.12 Score=54.33 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
.++|+|||||+-|.+.|+.|.+.| ++|+++.|++.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCC--CCceEEEecCC
Confidence 579999999999999999999998 89999888753
No 479
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.59 E-value=0.29 Score=45.85 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=35.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
||+.|.|+ |.+|.+++..|++.| ++|++.+|+++.++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g--~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG--HKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 58999996 999999999999998 899999999887666544
No 480
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.59 E-value=0.89 Score=45.60 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeC---CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR---DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC 203 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r---~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV 203 (420)
..+|.|+|+|.+|...+..+...| .+|++++| ++++.+.+.+.|........ ..+. +. ......|+|
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~----~~~~---~~-~~~~~~d~v 242 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGATYVNSSK----TPVA---EV-KLVGEFDLI 242 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCEEecCCc----cchh---hh-hhcCCCCEE
Confidence 468999999999999988887777 78999988 56666666655432100000 0000 01 113468999
Q ss_pred EEccChh-hHHHHHHHhhhcCCCCCeEEE
Q 014700 204 LHAMPVQ-FSSSFLEGISDYVDPGLPFIS 231 (420)
Q Consensus 204 IlaVp~~-~l~~vl~~i~~~l~~~~iVVs 231 (420)
|-++... .+.+.+ ..++++..++.
T Consensus 243 id~~g~~~~~~~~~----~~l~~~G~~v~ 267 (355)
T cd08230 243 IEATGVPPLAFEAL----PALAPNGVVIL 267 (355)
T ss_pred EECcCCHHHHHHHH----HHccCCcEEEE
Confidence 9999854 344433 33445444443
No 481
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.57 E-value=1.6 Score=38.85 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=29.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEE-EeC-CHHHHHHHHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMR-DPAVCQSINE 170 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l-~~r-~~~~~~~i~~ 170 (420)
+||+|+|+|.||..++..+.+.. +.++.. .++ +++.+..+.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~-~~~lvai~d~~~~~~~a~ll~ 44 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERP-DIEVVAINDLTDPETLAHLLK 44 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CCEEEEeecCCCHHHHHHHhc
Confidence 58999999999999999987643 256654 453 5555555443
No 482
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.55 E-value=1.2 Score=42.36 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=34.5
Q ss_pred CCeEEEEcc-c-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-G-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-G-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.+++.|.|+ | .+|.+++..|++.| ++|++.+|+++..+...
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~ 59 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEG--ARVVISDIHERRLGETA 59 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 478999997 6 69999999999998 89999999887655443
No 483
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.55 E-value=1 Score=42.69 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=35.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.++|.|.|+ |.+|.+++..|++.| ++|.+.+|+++..+.+.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDPAKLAAAA 51 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 468999996 999999999999998 89999999987655443
No 484
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.55 E-value=0.74 Score=45.96 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=36.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.+.+.|.|+ |.+|.++|..|++.| ++|.+++|+++..+++.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G--~~Vil~~R~~~~l~~~~~ 95 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKG--LNLVLVARNPDKLKDVSD 95 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH
Confidence 467889996 889999999999998 899999999987766554
No 485
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.51 E-value=0.29 Score=46.53 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=52.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700 128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA 206 (420)
Q Consensus 128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla 206 (420)
|+|.|.|+ |.+|..+...|.+.| ++|....|+++....+. .+... ...+ +.-..++..++.+.|.++++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~--~~v~~~~r~~~~~~~~~-~~v~~-~~~d------~~~~~~l~~a~~G~~~~~~i 70 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG--HEVRAAVRNPEAAAALA-GGVEV-VLGD------LRDPKSLVAGAKGVDGVLLI 70 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC--CEEEEEEeCHHHHHhhc-CCcEE-EEec------cCCHhHHHHHhccccEEEEE
Confidence 68999995 999999999999998 99999999998877766 22211 0111 11112456677899999988
Q ss_pred cC
Q 014700 207 MP 208 (420)
Q Consensus 207 Vp 208 (420)
.+
T Consensus 71 ~~ 72 (275)
T COG0702 71 SG 72 (275)
T ss_pred ec
Confidence 88
No 486
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.50 E-value=0.31 Score=47.08 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=36.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.+++|.|.|+ |.+|.+++..|++.| ++|.+.+|+++..+.+.+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAG--HRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCc--CEEEEEeCCHHHHHHHHh
Confidence 3568999996 999999999999998 899999999887666554
No 487
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.48 E-value=0.28 Score=48.50 Aligned_cols=74 Identities=26% Similarity=0.288 Sum_probs=55.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 126 ~~mkI~IIG-aGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
..++|+||| ...+|.++|..|.+.|. +..|+++.... .++.+.++.||+
T Consensus 156 ~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADI 207 (293)
T PRK14185 156 SGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADI 207 (293)
T ss_pred CCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCE
Confidence 368999999 57899999999998731 26888774321 156677889999
Q ss_pred EEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700 203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
||.|+....+ +. ..+++++++||++
T Consensus 208 vIsAvGkp~~---i~--~~~vk~gavVIDv 232 (293)
T PRK14185 208 IIAALGQPEF---VK--ADMVKEGAVVIDV 232 (293)
T ss_pred EEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence 9999985543 11 4567899999887
No 488
>PRK13984 putative oxidoreductase; Provisional
Probab=92.46 E-value=0.41 Score=52.05 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
..++|.|||+|..|.+.|..|.+.| ++|+++++.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4678999999999999999999998 8999998764
No 489
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=92.43 E-value=0.16 Score=52.01 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=31.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
..+|.|||+|..|.+.|..|++.| ++|+++++.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 358999999999999999999999 99999998763
No 490
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.42 E-value=0.34 Score=54.65 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=45.6
Q ss_pred cCCCeEEEEcccHHHHHH-HHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700 125 ERTNKVVVLGGGSFGTAM-AAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY 202 (420)
Q Consensus 125 ~~~mkI~IIGaGamG~al-A~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi 202 (420)
..+++|.|||+|..|.+. |..|.+.| ++|+++|.++ ...+.+.+.|+. +. .-.+. +.+.++|+
T Consensus 2 ~~~~~i~viG~G~sG~salA~~L~~~G--~~V~~sD~~~~~~~~~L~~~gi~--~~----------~g~~~-~~~~~~d~ 66 (809)
T PRK14573 2 MKSLFYHFIGIGGIGMSALAHILLDRG--YSVSGSDLSEGKTVEKLKAKGAR--FF----------LGHQE-EHVPEDAV 66 (809)
T ss_pred CCcceEEEEEecHHhHHHHHHHHHHCC--CeEEEECCCCChHHHHHHHCCCE--Ee----------CCCCH-HHcCCCCE
Confidence 445679999999999997 99999998 9999999654 233445443321 10 01122 34667899
Q ss_pred EEEc
Q 014700 203 CLHA 206 (420)
Q Consensus 203 VIla 206 (420)
||..
T Consensus 67 vV~S 70 (809)
T PRK14573 67 VVYS 70 (809)
T ss_pred EEEC
Confidence 8875
No 491
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.39 E-value=1.2 Score=44.41 Aligned_cols=91 Identities=16% Similarity=0.087 Sum_probs=57.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc---cCCcE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADY 202 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal---~~aDi 202 (420)
..+|.|+|+|.+|.+....+...| . .|++.++++++.+.+.+.|........ . .+.++.. ...|+
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~-----~----~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREMGADKLVNPQ-----N----DDLDHYKAEKGYFDV 238 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHcCCcEEecCC-----c----ccHHHHhccCCCCCE
Confidence 468999999999999888777777 5 688899999888877765532111000 0 0122211 24799
Q ss_pred EEEccChh-hHHHHHHHhhhcCCCCCeEEEe
Q 014700 203 CLHAMPVQ-FSSSFLEGISDYVDPGLPFISL 232 (420)
Q Consensus 203 VIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~ 232 (420)
||-++... .+...++- ++++..++.+
T Consensus 239 vid~~G~~~~~~~~~~~----l~~~G~iv~~ 265 (343)
T PRK09880 239 SFEVSGHPSSINTCLEV----TRAKGVMVQV 265 (343)
T ss_pred EEECCCCHHHHHHHHHH----hhcCCEEEEE
Confidence 99998864 34444433 4445555444
No 492
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.38 E-value=0.34 Score=47.88 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=32.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC 165 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~ 165 (420)
.|+|.|.|+ |.+|+.++..|++.| ++|++..|+.+..
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G--~~V~~~~r~~~~~ 42 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG--YTINATVRDPKDR 42 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC--CEEEEEEcCCcch
Confidence 478999995 999999999999998 8999888876543
No 493
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.37 E-value=1.3 Score=42.08 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=34.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
.+.+.|.|+ |.+|.+++..|++.| ++|++.+|+++..+...
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~ 49 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAG--ASVAICGRDEERLASAE 49 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence 467899996 789999999999998 89999999987665543
No 494
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.36 E-value=2.1 Score=45.10 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=49.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH 205 (420)
Q Consensus 127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl 205 (420)
.+||.|||+|.++..=+..|.+.| .+|+++...- +.++.+.+.+. ..+.. .. . ...+ ++++++||.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~~~~-i~~~~-----~~---~-~~~d-l~~~~lv~~ 78 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWADAGM-LTLVE-----GP---F-DESL-LDTCWLAIA 78 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHhCCC-EEEEe-----CC---C-ChHH-hCCCEEEEE
Confidence 579999999999999999999998 8999997542 23344443321 11100 00 0 2233 688999999
Q ss_pred ccChhhHH
Q 014700 206 AMPVQFSS 213 (420)
Q Consensus 206 aVp~~~l~ 213 (420)
|+.+..+.
T Consensus 79 at~d~~~n 86 (457)
T PRK10637 79 ATDDDAVN 86 (457)
T ss_pred CCCCHHHh
Confidence 99875543
No 495
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.35 E-value=1.4 Score=40.76 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=33.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS 167 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~ 167 (420)
.++|.|.|+ |.+|..++..|++.| ++|++.+|+++...+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARG--ARVALIGRGAAPLSQ 46 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCC--CeEEEEeCChHhHHH
Confidence 468999996 999999999999998 899999998765433
No 496
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=92.32 E-value=0.14 Score=54.91 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=28.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA 163 (420)
Q Consensus 128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~ 163 (420)
+||+|||||.-|.+.++.|.+.| ++|+++.++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCC--CCCeEEecCCC
Confidence 69999999999999999999998 89999998875
No 497
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.31 E-value=0.34 Score=45.54 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=35.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
||+|.|.|+ |.+|.+++..|++.| ++|++.+|+++..+.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG--ARLYLAARDVERLERLA 42 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHH
Confidence 468999994 999999999999998 89999999987665543
No 498
>PRK06194 hypothetical protein; Provisional
Probab=92.30 E-value=1.3 Score=42.71 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=34.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN 169 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~ 169 (420)
+++|.|.|+ |.+|..++..|++.| ++|++++|+.+..+.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALG--MKLVLADVQQDALDRAV 47 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence 468999995 899999999999998 89999999876555443
No 499
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.30 E-value=0.48 Score=49.54 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=29.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP 162 (420)
Q Consensus 129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~ 162 (420)
||.|||+|..|.+.|..|.+.| ++|+++|+.+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCC
Confidence 7999999999999999999998 9999999764
No 500
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.29 E-value=1.2 Score=41.98 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=35.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700 127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE 170 (420)
Q Consensus 127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~ 170 (420)
.++|.|.|+ |.+|.++|..|++.| ++|.+.+|+++..+.+.+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~ 47 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAA 47 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 468999996 899999999999998 899999999876555543
Done!