BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014701
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A9O|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Phosphate
pdb|1A9P|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
9-deazainosine And Phosphate
pdb|1A9S|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Inosine And Sulfate
Length = 289
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 283 IGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLIIGVIVIRYIALPL 342
+GE L+ EG+ +LG P + LLR L + +S + VIV R+ L +
Sbjct: 181 MGEQRELQ--EGTYVMLGG---PNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRV 235
Query: 343 LGVGIVKGAI----------------HFGFVKSDPLYQFVLLLQFALPPAVNIG 380
G ++ + G + L QFV LL ++P + + G
Sbjct: 236 FGFSLITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG 289
>pdb|1V48|A Chain A, Calf Spleen Purine Nucleoside Phosphorylase (Pnp) Binary
Complex With 9-(5,5-Difluoro-5-Phosphonopenthyl)guanine
pdb|2AI1|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen
pdb|2AI2|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen
pdb|2AI3|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen
Length = 289
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 283 IGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLIIGVIVIRYIALPL 342
+GE L+ EG+ +LG P + LLR L + +S + VIV R+ L +
Sbjct: 181 MGEQRELQ--EGTYVMLGG---PNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRV 235
Query: 343 LGVGIVKGAI----------------HFGFVKSDPLYQFVLLLQFALPPAVNIG 380
G ++ + G + L QFV LL ++P + + G
Sbjct: 236 FGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG 289
>pdb|1FXU|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen In
Complex With N(7)- Acycloguanosine Inhibitor And A
Phosphate Ion
Length = 289
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 283 IGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLIIGVIVIRYIALPL 342
+GE L+ EG+ +LG P + LLR L + +S + VIV R+ L +
Sbjct: 181 MGEQRELQ--EGTYVMLGG---PNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRV 235
Query: 343 LGVGIVKGAI----------------HFGFVKSDPLYQFVLLLQFALPPAVNIG 380
G ++ + G + L QFV LL ++P + + G
Sbjct: 236 FGFSLITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG 289
>pdb|1LV8|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|B Chain B, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|C Chain C, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|D Chain D, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|E Chain E, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|F Chain F, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|B Chain B, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|C Chain C, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|D Chain D, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|E Chain E, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|F Chain F, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
Length = 289
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 283 IGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLIIGVIVIRYIALPL 342
+GE L+ EG+ +LG P + LLR L + +S + VIV R+ L +
Sbjct: 181 MGEQRELQ--EGTYVMLGG---PNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRV 235
Query: 343 LGVGIVKGAI----------------HFGFVKSDPLYQFVLLLQFALPPAVNIG 380
G ++ + G + L QFV LL ++P + + G
Sbjct: 236 FGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG 289
>pdb|1PBN|A Chain A, Purine Nucleoside Phosphorylase
pdb|3PNP|A Chain A, The High Resolution Crystal Structure Of Bovine Spleen
Purine Nucleoside Phosphorylase In Complex Forms With
Phosphate And 9- Deazainosine
pdb|4PNP|A Chain A, The High Resolution Crystal Structure Of Bovine Spleen
Purine Nucleoside Phosphorylase In Complex Forms With
Phosphate And 9- Deazainosine
Length = 289
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 283 IGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLIIGVIVIRYIALPL 342
+GE L+ EG+ +LG P + LLR L + +S + VIV R+ L +
Sbjct: 181 MGEQRELQ--EGTYVMLGG---PNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRV 235
Query: 343 LGVGIVKGAI----------------HFGFVKSDPLYQFVLLLQFALPPAVNIG 380
G ++ + G + L QFV LL ++P + + G
Sbjct: 236 FGFSLITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG 289
>pdb|1B8N|A Chain A, Purine Nucleoside Phosphorylase
pdb|1B8O|A Chain A, Purine Nucleoside Phosphorylase
pdb|3FUC|A Chain A, Recombinant Calf Purine Nucleoside Phosphorylase In A
Binary Complex With Multisubstrate Analogue Inhibitor
9-(5',5'- Difluoro-5'-Phosphonopentyl)-9-Deazaguanine
Structure In A New Space Group With One Full Trimer In
The Asymmetric Unit
pdb|3FUC|B Chain B, Recombinant Calf Purine Nucleoside Phosphorylase In A
Binary Complex With Multisubstrate Analogue Inhibitor
9-(5',5'- Difluoro-5'-Phosphonopentyl)-9-Deazaguanine
Structure In A New Space Group With One Full Trimer In
The Asymmetric Unit
pdb|3FUC|C Chain C, Recombinant Calf Purine Nucleoside Phosphorylase In A
Binary Complex With Multisubstrate Analogue Inhibitor
9-(5',5'- Difluoro-5'-Phosphonopentyl)-9-Deazaguanine
Structure In A New Space Group With One Full Trimer In
The Asymmetric Unit
Length = 284
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 283 IGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLIIGVIVIRYIALPL 342
+GE L+ EG+ +LG P + LLR L + +S + VIV R+ L +
Sbjct: 181 MGEQRELQ--EGTYVMLGG---PNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRV 235
Query: 343 LGVGIVKGAI----------------HFGFVKSDPLYQFVLLLQFALP 374
G ++ + G + L QFV LL ++P
Sbjct: 236 FGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIP 283
>pdb|1A9T|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
9-Deazainosine And Phosphate
Length = 284
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 283 IGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLIIGVIVIRYIALPL 342
+GE L+ EG+ +LG P + LLR L + +S + VIV R+ L +
Sbjct: 181 MGEQRELQ--EGTYVMLGG---PNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRV 235
Query: 343 LGVGIVKGAI----------------HFGFVKSDPLYQFVLLLQFALP 374
G ++ + G + L QFV LL ++P
Sbjct: 236 FGFSLITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIP 283
>pdb|2QPL|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase Complexed To A Novel Purine Analogue
Length = 282
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 283 IGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLIIGVIVIRYIALPL 342
+GE L+ EG+ +LG P + LLR L + +S + VIV R+ L +
Sbjct: 179 MGEQRELQ--EGTYVMLGG---PNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRV 233
Query: 343 LGVGIVKGAI----------------HFGFVKSDPLYQFVLLLQFALP 374
G ++ + G + L QFV LL ++P
Sbjct: 234 FGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIP 281
>pdb|1VFN|A Chain A, Purine Nucleoside Phosphorylase
Length = 281
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 283 IGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLIIGVIVIRYIALPL 342
+GE L+ EG+ +LG P + LLR L + +S + VIV R+ L +
Sbjct: 178 MGEQRELQ--EGTYVMLGG---PNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRV 232
Query: 343 LGVGIVKGAI----------------HFGFVKSDPLYQFVLLLQFALP 374
G ++ + G + L QFV LL ++P
Sbjct: 233 FGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIP 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,105,868
Number of Sequences: 62578
Number of extensions: 439035
Number of successful extensions: 924
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 12
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)