Query 014701
Match_columns 420
No_of_seqs 109 out of 220
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 1E-104 2E-109 775.9 20.3 401 1-420 2-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 4.4E-51 9.6E-56 415.6 29.0 375 10-412 2-385 (385)
3 COG0679 Predicted permeases [G 100.0 4.3E-28 9.3E-33 241.4 21.4 308 7-417 2-309 (311)
4 TIGR00946 2a69 he Auxin Efflux 100.0 3.3E-27 7.1E-32 235.7 22.3 316 6-414 2-319 (321)
5 PRK09903 putative transporter 99.9 2.7E-24 5.8E-29 214.3 24.0 304 13-419 8-313 (314)
6 TIGR00841 bass bile acid trans 97.3 0.00083 1.8E-08 66.4 8.4 109 303-417 13-122 (286)
7 PF01758 SBF: Sodium Bile acid 93.3 0.27 5.9E-06 45.3 7.0 107 304-416 4-112 (187)
8 COG0385 Predicted Na+-dependen 92.9 0.5 1.1E-05 47.5 8.6 109 302-417 42-152 (319)
9 TIGR00841 bass bile acid trans 92.3 3.2 6.9E-05 41.0 13.5 133 10-161 137-273 (286)
10 PF13593 DUF4137: SBF-like CPA 90.9 1.2 2.6E-05 44.7 8.9 109 304-416 37-147 (313)
11 TIGR00832 acr3 arsenical-resis 87.5 3 6.4E-05 42.2 8.9 138 263-417 13-158 (328)
12 TIGR00832 acr3 arsenical-resis 80.7 3.5 7.6E-05 41.7 6.0 101 16-117 183-290 (328)
13 COG0385 Predicted Na+-dependen 76.7 11 0.00024 38.0 8.0 45 74-118 224-268 (319)
14 PRK12460 2-keto-3-deoxyglucona 57.0 36 0.00078 34.3 7.0 104 13-125 165-269 (312)
15 PF05684 DUF819: Protein of un 54.2 32 0.00068 35.6 6.4 85 17-104 28-116 (378)
16 TIGR00939 2a57 Equilibrative N 48.3 3.5E+02 0.0076 28.4 18.1 19 328-346 339-357 (437)
17 PF03806 ABG_transport: AbgT p 41.0 2.8E+02 0.0061 29.9 11.0 80 13-94 79-164 (502)
18 PRK11339 abgT putative aminobe 40.1 94 0.002 33.5 7.4 78 13-92 89-172 (508)
19 TIGR00783 ccs citrate carrier 39.6 1.1E+02 0.0025 31.2 7.6 81 17-101 207-294 (347)
20 PRK11677 hypothetical protein; 39.4 32 0.00069 30.3 3.2 25 73-100 3-27 (134)
21 PF03812 KdgT: 2-keto-3-deoxyg 38.3 1.3E+02 0.0027 30.4 7.5 108 11-127 168-277 (314)
22 KOG2262 Sexual differentiation 38.0 6.8 0.00015 43.0 -1.5 93 66-169 438-533 (761)
23 PF05684 DUF819: Protein of un 35.7 71 0.0015 33.0 5.6 104 14-128 240-344 (378)
24 PF13593 DUF4137: SBF-like CPA 34.2 1.6E+02 0.0035 29.5 7.7 97 13-113 163-266 (313)
25 PF06305 DUF1049: Protein of u 33.3 58 0.0013 24.4 3.5 26 73-98 18-43 (68)
26 TIGR03802 Asp_Ala_antiprt aspa 30.9 49 0.0011 36.0 3.7 152 10-171 8-187 (562)
27 PF06295 DUF1043: Protein of u 30.9 45 0.00098 29.0 2.8 22 79-100 2-23 (128)
28 PF03616 Glt_symporter: Sodium 30.4 4.5E+02 0.0096 27.0 10.4 106 56-171 73-186 (368)
29 COG2323 Predicted membrane pro 29.2 1.5E+02 0.0034 28.4 6.3 81 14-101 8-88 (224)
30 COG3763 Uncharacterized protei 28.3 91 0.002 24.4 3.7 25 71-95 2-26 (71)
31 PRK03818 putative transporter; 28.2 87 0.0019 34.1 5.0 131 32-171 50-185 (552)
32 PRK05326 potassium/proton anti 27.9 2.9E+02 0.0062 29.9 8.9 98 22-125 252-351 (562)
33 PRK04972 putative transporter; 27.7 96 0.0021 33.8 5.2 104 11-119 11-135 (558)
34 TIGR00210 gltS sodium--glutama 25.1 2.4E+02 0.0053 29.4 7.4 90 35-130 270-363 (398)
35 PRK05274 2-keto-3-deoxyglucona 25.0 1.3E+02 0.0028 30.5 5.3 100 15-122 174-274 (326)
36 PF06796 NapE: Periplasmic nit 24.9 1.2E+02 0.0026 22.7 3.7 21 7-27 24-44 (56)
37 TIGR03082 Gneg_AbrB_dup membra 24.8 1.3E+02 0.0028 26.8 4.7 47 55-101 55-105 (156)
38 COG3180 AbrB Putative ammonia 24.0 1.1E+02 0.0023 31.5 4.4 47 55-101 66-116 (352)
39 TIGR02972 TMAO_torE trimethyla 23.9 1.4E+02 0.003 21.6 3.6 22 6-27 15-36 (47)
40 PF09512 ThiW: Thiamine-precur 23.8 1.2E+02 0.0025 27.3 4.1 83 11-98 53-148 (150)
41 COG0475 KefB Kef-type K+ trans 23.0 2.4E+02 0.0053 29.2 7.0 65 37-102 264-329 (397)
42 TIGR00793 kdgT 2-keto-3-deoxyg 22.9 2.6E+02 0.0056 28.2 6.7 107 11-125 168-275 (314)
43 PRK01844 hypothetical protein; 22.9 1.3E+02 0.0028 23.7 3.7 25 72-96 3-27 (72)
44 TIGR02973 nitrate_rd_NapE peri 22.6 1.6E+02 0.0034 20.8 3.6 21 7-27 11-31 (42)
45 PF03601 Cons_hypoth698: Conse 22.3 83 0.0018 31.6 3.2 47 59-105 68-116 (305)
46 COG3493 CitS Na+/citrate sympo 20.1 4.9E+02 0.011 27.2 8.1 101 22-127 84-195 (438)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.6e-105 Score=775.93 Aligned_cols=401 Identities=43% Similarity=0.804 Sum_probs=342.9
Q ss_pred CchHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHH
Q 014701 1 MKILDLFIAAF--IPVLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLN 78 (420)
Q Consensus 1 m~~~~li~~a~--~pvlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~ 78 (420)
|||++++-.|. +|++||++++.+|+++|+++.|+|++|+||.+|+++|++|+|||+|+|+|+++|.|++.+||+||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 79999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCcccceeeEEEecCChhhHHHHHHHHHhhcCCCCCCChhHHhhhhhHHHHHHHHhhhh
Q 014701 79 ILITYIVGSSLGWIVLKTTKAPYDLWGLVLGCCAAGNLGNMLFIIIPAICKERGSPFGDADACYRQGMVYSALSMAIGAI 158 (420)
Q Consensus 79 ~ll~~~~g~~lg~~v~~i~~~P~~~~~~~v~a~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~g~aYi~~~~~~~~i 158 (420)
.++++++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|+++++|||++|.|.+||++|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeecceeeccccCC-CccCccc-cCCCCCCC-CCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCch
Q 014701 159 YMWSYVYNIVRIYSSCT-NSEGEKL-DNSTENIT-PMEETTEKLSNSRMRPLLPLNGCSAVKDHLNHFELDCSITARKPQ 235 (420)
Q Consensus 159 ~~wt~g~~ll~~~~~~~-~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 235 (420)
++|||+||++.+...+. +...+++ |+.+++.. .+.|.+.+ ++ .++.. .+ .+++++.+..
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~--~~----~k~~l------l~-~~en~~~~~~----- 223 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDED--ST----CKTLL------LA-SKENRNNQVV----- 223 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccc--cc----ccccc------cc-ccccCCCcee-----
Confidence 99999999887663211 1111111 11111000 00000000 00 00000 00 0000011110
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccChhHHHHHHHHHhhcchhHHhhhcCCCCCchhhhhHHHhhcCcchhhhhhhhcccc
Q 014701 236 VQLLEKIKQCFQTFATKFNLRKLFAPSTIAAIIGFMVGIIPEFRKLLIGEHAPLRVVEGSASLLGEASIPTVTLIVGANL 315 (420)
Q Consensus 236 ~~~~~kl~~~~~~~~~~~~l~~~~~Pp~ia~ilg~iig~ippLk~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L 315 (420)
..+.+.+++.+...++.+++++++||++|+++|+++|.|||||+++|++++|+++++|+++.+|+++|||++++|||||
T Consensus 224 -g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL 302 (408)
T KOG2722|consen 224 -GREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNL 302 (408)
T ss_pred -eccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhcccc
Confidence 1122222333333344456999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCCCCchHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCC-CChhhhHHhhhccCCchHHHHHHHHhhcccCchhHH
Q 014701 316 LRGLKGTRIQLSLIIGVIVIRYIALPLLGVGIVKGAIHFGFVK-SDPLYQFVLLLQFALPPAVNIGTMTQLFRAGESEYS 394 (420)
Q Consensus 316 ~~g~~~s~l~~~~iv~i~~~RliilPiigv~iv~~~~~~g~~~-~Dpv~~FVlll~~~~PpA~~l~~it~l~~~~e~e~s 394 (420)
++|+++|.++.|++++++++||+++|+.|++++..++|+|.++ |||+|+||++||+++|||||++++||++|.+|+|||
T Consensus 303 ~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs 382 (408)
T KOG2722|consen 303 IQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECS 382 (408)
T ss_pred ccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccC
Q 014701 395 VIMLWTYALASFSLTFWTTFFMWLVK 420 (420)
Q Consensus 395 ~ilfw~Y~~~~islt~~~~~fl~~~~ 420 (420)
+++||+|+++.+++|+|+++|+|++.
T Consensus 383 ~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 383 VILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 99999999999999999999999873
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=4.4e-51 Score=415.64 Aligned_cols=375 Identities=28% Similarity=0.429 Sum_probs=288.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHH
Q 014701 10 AFIPVLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLNILITYIVGSSL 89 (420)
Q Consensus 10 a~~pvlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~~ll~~~~g~~l 89 (420)
++++++++++++++||+++ |+|+++++.+|.+|++++++++|||+|++++++.+.+++.++|+++++.++.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhccCCCcccceeeEEEecCChhhHHHHHHHHHhhcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhheeecceee
Q 014701 90 GWIVLKTTKAPYDLWGLVLGCCAAGNLGNMLFIIIPAICKERGSPFGDADACYRQGMVYSALSMAIGAIYMWSYVYNIVR 169 (420)
Q Consensus 90 g~~v~~i~~~P~~~~~~~v~a~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~g~aYi~~~~~~~~i~~wt~g~~ll~ 169 (420)
+|++.|++|.|+++++.+..+|+|+|++++|+.++++++.+ +|++|++++..+..++.|++|+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999763 78999999999999999999999887
Q ss_pred ccccCCCccCccc--cCCCCCCCCCccc-cccc----cccCC--CCCCCCCCCCCCCCCCCccccccccccCCchhHHHH
Q 014701 170 IYSSCTNSEGEKL--DNSTENITPMEET-TEKL----SNSRM--RPLLPLNGCSAVKDHLNHFELDCSITARKPQVQLLE 240 (420)
Q Consensus 170 ~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~----~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 240 (420)
.+.++.+.+++++ .++....+.++++ +.+. +.++. ++++.....+ ..++++.+..+ ....++..+..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 224 (385)
T PF03547_consen 147 SRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPS-QSSASAPSSVS-TSPSPSNSTGAEQ 224 (385)
T ss_pred ccccccccccccccccccccccccCCccccCCcccccccccccccCCccccccc-ccccccchhhc-cCCcccccchhhh
Confidence 6644322211111 0000000000000 0000 00000 0000000000 00000000000 0000000001111
Q ss_pred HHHHHHHHHHhhhhcccccChhHHHHHHHHHhhcchhHHhhhcCCCCCchhhhhHHHhhcCcchhhhhhhhccccccCCC
Q 014701 241 KIKQCFQTFATKFNLRKLFAPSTIAAIIGFMVGIIPEFRKLLIGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLK 320 (420)
Q Consensus 241 kl~~~~~~~~~~~~l~~~~~Pp~ia~ilg~iig~ippLk~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~ 320 (420)
+..+..+....+.-++.++|||++|+++|++++++|+++.++++ .+++++++++|++++|++++++|++|+++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~ 299 (385)
T PF03547_consen 225 KSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPR 299 (385)
T ss_pred hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc
Confidence 11111111111111388999999999999999999999999986 8999999999999999999999999999888
Q ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHHHHHhhcccCchhHHHHHHHH
Q 014701 321 GTRIQLSLIIGVIVIRYIALPLLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIGTMTQLFRAGESEYSVIMLWT 400 (420)
Q Consensus 321 ~s~l~~~~iv~i~~~RliilPiigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~~it~l~~~~e~e~s~ilfw~ 400 (420)
.++.+.+.....+++|++++|++++++++.+. -|+....+++++.++|||++...+++.||..+++++..++|+
T Consensus 300 ~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~ 373 (385)
T PF03547_consen 300 KSALGWKPSIIAVLVRLIILPLIGIGIVFLLG------LDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWS 373 (385)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77888888888899999999999999999775 356678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014701 401 YALASFSLTFWT 412 (420)
Q Consensus 401 Y~~~~islt~~~ 412 (420)
|+++.+++|+|+
T Consensus 374 ~~~~~~~~~~~~ 385 (385)
T PF03547_consen 374 TLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHC
Confidence 999999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.96 E-value=4.3e-28 Score=241.38 Aligned_cols=308 Identities=20% Similarity=0.267 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHH
Q 014701 7 FIAAFIPVLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLNILITYIVG 86 (420)
Q Consensus 7 i~~a~~pvlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~~ll~~~~g 86 (420)
++..+.+++++++++++||+++ |.|.+|++..|.+|++++++.+|||+|++++++-..++ +++..+++..+.+...+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4678899999999999999999 99999999999999999999999999999999987666 88888888888888888
Q ss_pred HHHHHHhHhhccCCCcccceeeEEEecCChhhHHHHHHHHHhhcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhheeecc
Q 014701 87 SSLGWIVLKTTKAPYDLWGLVLGCCAAGNLGNMLFIIIPAICKERGSPFGDADACYRQGMVYSALSMAIGAIYMWSYVYN 166 (420)
Q Consensus 87 ~~lg~~v~~i~~~P~~~~~~~v~a~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~g~aYi~~~~~~~~i~~wt~g~~ 166 (420)
.+..++..|.+|.+++++.....+.+|+|+|++++.+..++ | .++|++|.++++.++++++|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~------G~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------F------GEKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------c------CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999997766555 3 3457999999999999999999987
Q ss_pred eeeccccCCCccCccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCchhHHHHHHHHHH
Q 014701 167 IVRIYSSCTNSEGEKLDNSTENITPMEETTEKLSNSRMRPLLPLNGCSAVKDHLNHFELDCSITARKPQVQLLEKIKQCF 246 (420)
Q Consensus 167 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~kl~~~~ 246 (420)
.+.....+ + + ....+..
T Consensus 146 ~l~~~~~~---------------------------~---------------------------------~---~~~~~~~ 162 (311)
T COG0679 146 LLARSGGG---------------------------T---------------------------------N---KSLLSVL 162 (311)
T ss_pred HHHHhcCC---------------------------c---------------------------------h---hHHHHHH
Confidence 66533110 0 0 0001111
Q ss_pred HHHHhhhhcccccChhHHHHHHHHHhhcchhHHhhhcCCCCCchhhhhHHHhhcCcchhhhhhhhccccccCCCcCCCCc
Q 014701 247 QTFATKFNLRKLFAPSTIAAIIGFMVGIIPEFRKLLIGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQL 326 (420)
Q Consensus 247 ~~~~~~~~l~~~~~Pp~ia~ilg~iig~ippLk~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~l~~ 326 (420)
+ +-+.||+.+|.++|++..... ... -.++.++.+++|++++|+.++.+|+.|+. .+.++...
T Consensus 163 ~--------~~~~nP~i~a~i~g~~~~~~~----i~l-----P~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~ 224 (311)
T COG0679 163 K--------KLLTNPLIIALILGLLLNLLG----ISL-----PAPLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKP 224 (311)
T ss_pred H--------HHHhCcHHHHHHHHHHHHHcC----CCC-----cHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccc
Confidence 1 456899999999999987655 111 13899999999999999999999999987 55566778
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 014701 327 SLIIGVIVIRYIALPLLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIGTMTQLFRAGESEYSVIMLWTYALASF 406 (420)
Q Consensus 327 ~~iv~i~~~RliilPiigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~~it~l~~~~e~e~s~ilfw~Y~~~~i 406 (420)
+.+......|+++.|++..++.+... + ++...-|+.++.++|+|.+-..+++-+|..++..+...+-+=.++.+
T Consensus 225 ~~~~~~~~~kll~~Pl~~~~~~~~~~----l--~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~ 298 (311)
T COG0679 225 PIILIALSLKLLLAPLVALLVAKLLG----L--SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLL 298 (311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC----C--ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 88888888899999999999766543 2 44444899999999999999999999988888888888888889999
Q ss_pred HHHHHHHhhhh
Q 014701 407 SLTFWTTFFMW 417 (420)
Q Consensus 407 slt~~~~~fl~ 417 (420)
++|.|..++.+
T Consensus 299 t~p~~~~~l~~ 309 (311)
T COG0679 299 TLPLLILLLLR 309 (311)
T ss_pred HHHHHHHHHhc
Confidence 99998887765
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.95 E-value=3.3e-27 Score=235.72 Aligned_cols=316 Identities=16% Similarity=0.183 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHH
Q 014701 6 LFIAAFIPVLKVLLLTALGLFL-ALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLNILITYI 84 (420)
Q Consensus 6 li~~a~~pvlkVlli~~~G~~l-A~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~~ll~~~ 84 (420)
.+|..+..++.++++.++|+++ . |+++++++..|.+|++++++.+|||+|+++++.-..++....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999 8 999999999999999999999999999999985433244455555555566677
Q ss_pred HHHHHHHHhHh-hccCCCcccceeeEEEecCChhhHHHHHHHHHhhcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhhee
Q 014701 85 VGSSLGWIVLK-TTKAPYDLWGLVLGCCAAGNLGNMLFIIIPAICKERGSPFGDADACYRQGMVYSALSMAIGAIYMWSY 163 (420)
Q Consensus 85 ~g~~lg~~v~~-i~~~P~~~~~~~v~a~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~g~aYi~~~~~~~~i~~wt~ 163 (420)
...+++|++.| .+|.+++.++....++.++|++.+-+-+++++-. ++. . .+..|...+.....+..|++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G-------~~~--~-~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFG-------EEG--A-KILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhc-------ccc--h-hhhHHHHHHHhccchhHHHH
Confidence 78899999998 8899988999999999999999999999999953 221 1 13566666666667788988
Q ss_pred ecceeeccccCCCccCccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCchhHHHHHHH
Q 014701 164 VYNIVRIYSSCTNSEGEKLDNSTENITPMEETTEKLSNSRMRPLLPLNGCSAVKDHLNHFELDCSITARKPQVQLLEKIK 243 (420)
Q Consensus 164 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~kl~ 243 (420)
++-+...... +++ + .. ++.+++++
T Consensus 150 ~~~~~~~~~~-----~~~--------------------~--------------------~~-----------~~~~~~~~ 173 (321)
T TIGR00946 150 GLFLVSEDGA-----GGE--------------------G--------------------SG-----------ESTRLMLI 173 (321)
T ss_pred HHHHhccccc-----ccc--------------------c--------------------cc-----------hhHHHHHH
Confidence 8744321100 000 0 00 01112222
Q ss_pred HHHHHHHhhhhcccccChhHHHHHHHHHhhcchhHHhhhcCCCCCchhhhhHHHhhcCcchhhhhhhhccccccCCCcCC
Q 014701 244 QCFQTFATKFNLRKLFAPSTIAAIIGFMVGIIPEFRKLLIGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTR 323 (420)
Q Consensus 244 ~~~~~~~~~~~l~~~~~Pp~ia~ilg~iig~ippLk~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~ 323 (420)
+.++ +-+.||+.+|.++|+++..... + -| .++.++++++|++++|+.++++|..+.. ++.+
T Consensus 174 ~~~~--------~~~~nP~iia~i~Gl~~~~~~i-~-------lP-~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~ 234 (321)
T TIGR00946 174 FVWK--------KLIKFPPLWAPLLSVILSLVGF-K-------MP-GLILKSISILSGATTPMALFSLGLALSP--RKIK 234 (321)
T ss_pred HHHH--------HHHhCCChHHHHHHHHHHHHhh-c-------Cc-HHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhc
Confidence 2222 3447899999999999998763 1 11 6899999999999999999999999863 2333
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHHHHHhhcccCchhHHHHHHHHHHH
Q 014701 324 IQLSLIIGVIVIRYIALPLLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIGTMTQLFRAGESEYSVIMLWTYAL 403 (420)
Q Consensus 324 l~~~~iv~i~~~RliilPiigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~~it~l~~~~e~e~s~ilfw~Y~~ 403 (420)
.+++.+...++.|+++.|++..++.+.. +-|+..+-+++++.++|||.+...+++-||..+++.+...+++-.+
T Consensus 235 ~~~~~~~~~~~~klil~P~i~~~~~~~~------~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~l 308 (321)
T TIGR00946 235 LGVRDAILALIVRFLVQPAVMAGISKLI------GLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVL 308 (321)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4567888899999999999997776532 4478889999999999999999999999999988899999999999
Q ss_pred HHHHHHHHHHh
Q 014701 404 ASFSLTFWTTF 414 (420)
Q Consensus 404 ~~islt~~~~~ 414 (420)
+.+++|+|+.+
T Consensus 309 s~~tlp~~~~l 319 (321)
T TIGR00946 309 SLISLPLFIIL 319 (321)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.93 E-value=2.7e-24 Score=214.33 Aligned_cols=304 Identities=15% Similarity=0.137 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 014701 13 PVLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLNILITYIVGSSLGWI 92 (420)
Q Consensus 13 pvlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~~ll~~~~g~~lg~~ 92 (420)
.++-++++.++|+++. |+|+++++..|.+|++++++.+||++|+++.+. +.++..+-|.+.+..++.+...++++|+
T Consensus 8 ~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (314)
T PRK09903 8 DLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSWF 84 (314)
T ss_pred HHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3555668899999999 999999999999999999999999999999875 5555553454567777888888888888
Q ss_pred hHh-hccCCCcccceeeEEEecCChhhHHHHHHHHHhhcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhheeecceeecc
Q 014701 93 VLK-TTKAPYDLWGLVLGCCAAGNLGNMLFIIIPAICKERGSPFGDADACYRQGMVYSALSMAIGAIYMWSYVYNIVRIY 171 (420)
Q Consensus 93 v~~-i~~~P~~~~~~~v~a~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~g~aYi~~~~~~~~i~~wt~g~~ll~~~ 171 (420)
+.| ..|-+++.++....+++++|.|.+-+-+++++- |++. . -|+.|..++. +.+++.|++|.-+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~-------G~~~--~-~~~~~a~~~~-~~~~~~~~~g~~~~~~~ 153 (314)
T PRK09903 85 GCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIY-------GDSV--S-TGLVVAIISI-IVNAITIPIGLYLLNPS 153 (314)
T ss_pred HHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHc-------Cchh--h-hhhHHHHHHH-HHHHHHHHHHHHHHccc
Confidence 875 667776667777788899999999999999983 4321 1 1454555443 57889999987665432
Q ss_pred ccCCCccCccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCchhHHHHHHHHHHHHHHh
Q 014701 172 SSCTNSEGEKLDNSTENITPMEETTEKLSNSRMRPLLPLNGCSAVKDHLNHFELDCSITARKPQVQLLEKIKQCFQTFAT 251 (420)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~kl~~~~~~~~~ 251 (420)
+. .++ + . +.. ++.++
T Consensus 154 ~~----~~~---------------------~--------------------~------------~~~----~~~l~---- 168 (314)
T PRK09903 154 SG----ADG---------------------K--------------------K------------NSN----LSALI---- 168 (314)
T ss_pred cc----ccc---------------------c--------------------c------------chH----HHHHH----
Confidence 10 000 0 0 001 12222
Q ss_pred hhhcccccChhHHHHHHHHHhhcchhHHhhhcCCCCCc-hhhhhHHHhhcCcchhhhhhhhccccccCCCcCCCCchHHH
Q 014701 252 KFNLRKLFAPSTIAAIIGFMVGIIPEFRKLLIGEHAPL-RVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLSLII 330 (420)
Q Consensus 252 ~~~l~~~~~Pp~ia~ilg~iig~ippLk~lf~~~~~pL-~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~l~~~~iv 330 (420)
+-+.||+.+|.++|+++.+.. =++ .++.++++++|++++|+.++.+|+.|++...+ .. +...
T Consensus 169 ----~~~~nP~iia~~~gl~~~l~~----------i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~--~~-~~~~ 231 (314)
T PRK09903 169 ----SAAKEPVVWAPVLATILVLVG----------VKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE--FS-AEIA 231 (314)
T ss_pred ----HHHhchHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc-HHHH
Confidence 335679999999999975421 112 69999999999999999999999999874322 22 3445
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHH
Q 014701 331 GVIVIRYIALPLLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIGTMTQLFRAGESEYSVIMLWTYALASFSLTF 410 (420)
Q Consensus 331 ~i~~~RliilPiigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~~it~l~~~~e~e~s~ilfw~Y~~~~islt~ 410 (420)
...+.|+++.|++..++.... |+ |+...=+++++.++|+|.+-..+++-||...+..+...+.+-.++++++|+
T Consensus 232 ~~~~~Kli~~P~i~~~~~~~~---~l---~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl 305 (314)
T PRK09903 232 YNTFLKLILMPLALLLVGMAC---HL---NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPL 305 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---CC---CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999886655432 33 667777999999999999999999999887777888899999999999999
Q ss_pred HHHhhhhcc
Q 014701 411 WTTFFMWLV 419 (420)
Q Consensus 411 ~~~~fl~~~ 419 (420)
|+.+ ++++
T Consensus 306 ~~~l-~~~~ 313 (314)
T PRK09903 306 WIYV-SRLV 313 (314)
T ss_pred HHHH-HHhh
Confidence 9985 4444
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.31 E-value=0.00083 Score=66.44 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=88.0
Q ss_pred chhhhhhhhcccccc-CCCcCCCCchHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHHH
Q 014701 303 SIPTVTLIVGANLLR-GLKGTRIQLSLIIGVIVIRYIALPLLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIGT 381 (420)
Q Consensus 303 ~VPl~llvLGa~L~~-g~~~s~l~~~~iv~i~~~RliilPiigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~~ 381 (420)
.+..+++.+|.++.. .+++....+|.+....+.|++++|+++.++.+.. +.||.+...+++..++|+|.+...
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~l~~~~~~glvL~~~~P~~~~s~v 86 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------KLPPELAVGVLIVGCCPGGTASNV 86 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHheeeCCCchHHHH
Confidence 367788999999873 2222224557888888999999999998887643 568999999999999999999999
Q ss_pred HHhhcccCchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014701 382 MTQLFRAGESEYSVIMLWTYALASFSLTFWTTFFMW 417 (420)
Q Consensus 382 it~l~~~~e~e~s~ilfw~Y~~~~islt~~~~~fl~ 417 (420)
+|+.+|...+..+.....+=+++++++|+|+.++..
T Consensus 87 ~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 87 FTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986655556777779999999999999988764
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.25 E-value=0.27 Score=45.30 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=72.5
Q ss_pred hhhhhhhhcccccc-CCCcCCCCchHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHHHH
Q 014701 304 IPTVTLIVGANLLR-GLKGTRIQLSLIIGVIVIRYIALPLLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIGTM 382 (420)
Q Consensus 304 VPl~llvLGa~L~~-g~~~s~l~~~~iv~i~~~RliilPiigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~~i 382 (420)
+-..++.+|.++.. -.++..-.+|.++...+..++++|+++.++.+.. ++.||-+..-+++..+.|.+...-.+
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 34556667776641 1222223467888889999999999999998444 36789999999999999999998888
Q ss_pred HhhcccCchhHH-HHHHHHHHHHHHHHHHHHHhhh
Q 014701 383 TQLFRAGESEYS-VIMLWTYALASFSLTFWTTFFM 416 (420)
Q Consensus 383 t~l~~~~e~e~s-~ilfw~Y~~~~islt~~~~~fl 416 (420)
|.+.| |+.+.| +.....=..+.+.+|+|..++.
T Consensus 79 t~l~~-Gd~~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 79 TYLAG-GDVALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcccccceeeHHHHHHHHHHHHHHHHHh
Confidence 88774 434443 3444666889999999987764
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=92.87 E-value=0.5 Score=47.49 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=83.1
Q ss_pred cchhhhhhhhccccccC-CCcCCCCchHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHH
Q 014701 302 ASIPTVTLIVGANLLRG-LKGTRIQLSLIIGVIVIRYIALPLLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIG 380 (420)
Q Consensus 302 a~VPl~llvLGa~L~~g-~~~s~l~~~~iv~i~~~RliilPiigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~ 380 (420)
..+-++++..|.+|.+- .+..-.+||..+...+.-++++|++|+++.+... -||-+.-=+++..+.|..++.-
T Consensus 42 ~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~------l~~~l~~Gl~ll~~~Pggv~S~ 115 (319)
T COG0385 42 IALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP------LPPELAVGLLLLGCCPGGVASN 115 (319)
T ss_pred HHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHhHHheeeCCCchhHH
Confidence 45677888999999741 1123357899999999999999999999998653 5888888889999999999998
Q ss_pred HHHhhcccCchhHH-HHHHHHHHHHHHHHHHHHHhhhh
Q 014701 381 TMTQLFRAGESEYS-VIMLWTYALASFSLTFWTTFFMW 417 (420)
Q Consensus 381 ~it~l~~~~e~e~s-~ilfw~Y~~~~islt~~~~~fl~ 417 (420)
.+|++. .|+--.| ..-.-+=+++++..|+++.+|+.
T Consensus 116 ~~t~lA-kGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 116 AMTYLA-KGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899988 3333322 22336777888888998888763
No 9
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.29 E-value=3.2 Score=41.04 Aligned_cols=133 Identities=10% Similarity=0.145 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH---hhchhhhhhhhHHHHHhhcccccccch-hhhhHHHHHHHHHHHH
Q 014701 10 AFIPVLKVLLLTALGLFLALDRIDILGDLARQH---LNKVVFFVFNPALVGSSLADHITAEGI-GMLWFMPLNILITYIV 85 (420)
Q Consensus 10 a~~pvlkVlli~~~G~~lA~~~~giL~~~~~k~---ls~lv~~vflP~LiFs~la~~it~~~i-~~~w~ipv~~ll~~~~ 85 (420)
..+ ..-+++-...|..+. |.- ++.+|. ++.+... ++=++++.-++.+.. ++ .+.|.+-+-.++...+
T Consensus 137 ~~~-~~~v~vPl~lG~~~r--~~~---p~~~~~~~~~~~~s~~-~l~liv~~~~~~~~~--~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 137 GLS-LVAVLIPVSIGMLVK--HKL---PQIAKIILKVGLISVF-LLSVIIAVVGGINVE--NLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHH-HHHHHHHHHHHHHHH--HHh---HHHHHHHHhCchHHHH-HHHHHHHHHHHhhHH--HHHHhhHHHHHHHHHHHHH
Confidence 344 677888899998776 321 222232 3322221 122334444443332 12 2334444557778899
Q ss_pred HHHHHHHhHhhccCCCcccceeeEEEecCChhhHHHHHHHHHhhcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhh
Q 014701 86 GSSLGWIVLKTTKAPYDLWGLVLGCCAAGNLGNMLFIIIPAICKERGSPFGDADACYRQGMVYSALSMAIGAIYMW 161 (420)
Q Consensus 86 g~~lg~~v~~i~~~P~~~~~~~v~a~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~g~aYi~~~~~~~~i~~w 161 (420)
|+.+||.+.|.+|.+++.+.-+.-.++..|++ +-+++..+. |++ + ...-...|...+...+.++.+
T Consensus 208 ~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~-~-~a~~~~~~~v~~~~~~~~~a~ 273 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP-E-VAVPSAIFPLIYALFQLAFAL 273 (286)
T ss_pred HHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888889999999998 555444433 332 1 222234565555555555443
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=90.85 E-value=1.2 Score=44.70 Aligned_cols=109 Identities=21% Similarity=0.286 Sum_probs=80.5
Q ss_pred hhhhhhhhcccccc-CCCcCCCCchHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHH-H
Q 014701 304 IPTVTLIVGANLLR-GLKGTRIQLSLIIGVIVIRYIALPLLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIG-T 381 (420)
Q Consensus 304 VPl~llvLGa~L~~-g~~~s~l~~~~iv~i~~~RliilPiigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~-~ 381 (420)
|..+.++-|.+|.. .++..--.+|..+.+...=+++.|+++.++...... + .|+-+..=+++..|+||.++.+ .
T Consensus 37 v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~ 112 (313)
T PF13593_consen 37 VALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVV 112 (313)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHH
Confidence 88889999988862 222233567888899999999999999999887752 3 3555889999999999998864 5
Q ss_pred HHhhcccCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014701 382 MTQLFRAGESEYSVIMLWTYALASFSLTFWTTFFM 416 (420)
Q Consensus 382 it~l~~~~e~e~s~ilfw~Y~~~~islt~~~~~fl 416 (420)
+|+..|-.+.-.-..-.-+-.+.++..|+|+..++
T Consensus 113 ~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 113 LTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 77776333222222223678888999999998876
No 11
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=87.53 E-value=3 Score=42.19 Aligned_cols=138 Identities=16% Similarity=0.080 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhcchhHHhhhcCCCCCchhhhhHHHhhcCcchh------hhhhhhccccc-cCCCcCCCCchHHHHHHHH
Q 014701 263 TIAAIIGFMVGIIPEFRKLLIGEHAPLRVVEGSASLLGEASIP------TVTLIVGANLL-RGLKGTRIQLSLIIGVIVI 335 (420)
Q Consensus 263 ~ia~ilg~iig~ippLk~lf~~~~~pL~~i~ds~~~lG~a~VP------l~llvLGa~L~-~g~~~s~l~~~~iv~i~~~ 335 (420)
.+++++|+++|..-|-.. .++.. . .+.....| .+++.+|.++. +-.++.--.+|.++...+.
T Consensus 13 ~~~~i~~~~~g~~~P~~~---------~~~~~-~-~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~ 81 (328)
T TIGR00832 13 FLAIAAGVGLGVLFPSVF---------QALAA-L-EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFI 81 (328)
T ss_pred HHHHHHHHHHHHhccccH---------HHHHH-H-HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHH
Confidence 466777888887554311 11111 0 11223344 46677777775 1122233457889999999
Q ss_pred HHHHHhHHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHHHHHhhcccCchhHHHHH-HHHHHHHHHHHHHHHHh
Q 014701 336 RYIALPLLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIGTMTQLFRAGESEYSVIM-LWTYALASFSLTFWTTF 414 (420)
Q Consensus 336 RliilPiigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~~it~l~~~~e~e~s~il-fw~Y~~~~islt~~~~~ 414 (420)
-++++|+++.++.+.. .+.+|-+..=+++..|.|.+.....+|.+. .|+...|..+ -..=.++.+..|.+..+
T Consensus 82 qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~lA-kGnvalsv~lt~~stLl~~~~~P~l~~l 155 (328)
T TIGR00832 82 NWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQLA-KGDPEYTLVLVAVNSLFQVFLYAPLAWL 155 (328)
T ss_pred HHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 256778999999999999999877778877 4444444443 35666677777777766
Q ss_pred hhh
Q 014701 415 FMW 417 (420)
Q Consensus 415 fl~ 417 (420)
|+.
T Consensus 156 l~~ 158 (328)
T TIGR00832 156 LLG 158 (328)
T ss_pred HHh
Confidence 653
No 12
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=80.74 E-value=3.5 Score=41.68 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhccC-----CCCCHHHHHHhhchhhhhhhhHHHHHhhccccc--ccchhhhhHHHHHHHHHHHHHHH
Q 014701 16 KVLLLTALGLFLALDRI-----DILGDLARQHLNKVVFFVFNPALVGSSLADHIT--AEGIGMLWFMPLNILITYIVGSS 88 (420)
Q Consensus 16 kVlli~~~G~~lA~~~~-----giL~~~~~k~ls~lv~~vflP~LiFs~la~~it--~~~i~~~w~ipv~~ll~~~~g~~ 88 (420)
-+++-...|..+.+-.. +...++.++.++.+.. +++=..++...+.+-+ .++..+.+.+-+-.++++.+++.
T Consensus 183 ~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~ 261 (328)
T TIGR00832 183 YLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFF 261 (328)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 34555667766553111 1122233333454433 2233334444444321 12223333444456788899999
Q ss_pred HHHHhHhhccCCCcccceeeEEEecCChh
Q 014701 89 LGWIVLKTTKAPYDLWGLVLGCCAAGNLG 117 (420)
Q Consensus 89 lg~~v~~i~~~P~~~~~~~v~a~~fgN~~ 117 (420)
+||.+.|.+|.+++.|.-+.-+++-.|.+
T Consensus 262 lg~~~~r~~~l~~~~~~a~~~e~g~qN~~ 290 (328)
T TIGR00832 262 LTFALAKKLGLPYSITAPAAFTGASNNFE 290 (328)
T ss_pred HHHHHHHHhCcChhhhhhheehhhhhhHH
Confidence 99999999999999999989999988853
No 13
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=76.73 E-value=11 Score=38.03 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhccCCCcccceeeEEEecCChhh
Q 014701 74 FMPLNILITYIVGSSLGWIVLKTTKAPYDLWGLVLGCCAAGNLGN 118 (420)
Q Consensus 74 ~ipv~~ll~~~~g~~lg~~v~~i~~~P~~~~~~~v~a~~fgN~~~ 118 (420)
.+-+..+++..+|+.+||...|.++.++..|.-+.-|++-.|.+.
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l 268 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL 268 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH
Confidence 567778888899999999999999999999999999999999863
No 14
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=56.95 E-value=36 Score=34.26 Aligned_cols=104 Identities=18% Similarity=0.090 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhH-HHHHHHHHHHHHHHHHH
Q 014701 13 PVLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWF-MPLNILITYIVGSSLGW 91 (420)
Q Consensus 13 pvlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~-ipv~~ll~~~~g~~lg~ 91 (420)
+++..++-..+|.++. | +|++.|+.+++=+-. ..|-.. --++.+++++++.+.++ .-+..++...+...+++
T Consensus 165 ~lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~f-~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG----N-LDPDMRKFLTKGGPL-LIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh----c-cchhhHHHHhccceE-eHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4466888899999888 5 777777777765332 333333 45899999999999854 44445666778888888
Q ss_pred HhHhhccCCCcccceeeEEEecCChhhHHHHHHH
Q 014701 92 IVLKTTKAPYDLWGLVLGCCAAGNLGNMLFIIIP 125 (420)
Q Consensus 92 ~v~~i~~~P~~~~~~~v~a~~fgN~~~LPl~li~ 125 (420)
.+.|.+|.+++. ....+...||.--=|-++.+
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAVaA 269 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAIAA 269 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHHHH
Confidence 999999888855 22233347777666655543
No 15
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=54.19 E-value=32 Score=35.60 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhh----HHHHHHHHHHHHHHHHHHH
Q 014701 17 VLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLW----FMPLNILITYIVGSSLGWI 92 (420)
Q Consensus 17 Vlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w----~ipv~~ll~~~~g~~lg~~ 92 (420)
++++...|.+++ ..|++|.+....+.+.+.+.++|.-++==+= +.+.+++.+.. ..-+...+.+++|..+++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl-~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLL-SADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHH-HccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999 9999966666778888888888876554332 23444444443 3334445555677777666
Q ss_pred hHhhccCCCccc
Q 014701 93 VLKTTKAPYDLW 104 (420)
Q Consensus 93 v~~i~~~P~~~~ 104 (420)
+.+..--|+.|+
T Consensus 105 l~~~~l~~~~wk 116 (378)
T PF05684_consen 105 LFGGFLGPEGWK 116 (378)
T ss_pred HHhhcccchHHH
Confidence 665553355444
No 16
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=48.29 E-value=3.5e+02 Score=28.40 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 014701 328 LIIGVIVIRYIALPLLGVG 346 (420)
Q Consensus 328 ~iv~i~~~RliilPiigv~ 346 (420)
.+....+.|++..|++-+-
T Consensus 339 ~l~i~s~~R~iFIPlf~lc 357 (437)
T TIGR00939 339 WLPILSFLRVLFIPLFLLC 357 (437)
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 6777899999999998543
No 17
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=40.98 E-value=2.8e+02 Score=29.90 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHH------HHH
Q 014701 13 PVLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLNILITY------IVG 86 (420)
Q Consensus 13 pvlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~~ll~~------~~g 86 (420)
|-+.+++++..|+=.| +|.|+++.-.||.+.+.-=.+.+|.++|.-+-+++-.| ..-+-.+|+.+++.. ..|
T Consensus 79 ~PLG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasD-Ag~Vvl~PL~a~iF~~~GRhPlaG 156 (502)
T PF03806_consen 79 PPLGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASD-AGYVVLPPLAAMIFAAVGRHPLAG 156 (502)
T ss_pred CcHHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhccccc-ceeEeHHhhHHHHHHHcCCChHHH
Confidence 4566777777786666 48999999999999999999999999999998888544 334446888777766 677
Q ss_pred HHHHHHhH
Q 014701 87 SSLGWIVL 94 (420)
Q Consensus 87 ~~lg~~v~ 94 (420)
...|+..+
T Consensus 157 i~~afa~v 164 (502)
T PF03806_consen 157 IAAAFAGV 164 (502)
T ss_pred HHHHHHHH
Confidence 77777644
No 18
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=40.07 E-value=94 Score=33.50 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHH------HHH
Q 014701 13 PVLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLNILITY------IVG 86 (420)
Q Consensus 13 pvlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~~ll~~------~~g 86 (420)
|-+.+++++..|+-.|. |.|.++.-.||.+.+.-=...+|..+|.-+-+++- +|.--+-++|+.+.+.. +.|
T Consensus 89 ~pLG~vlv~mlgvgvae-~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~a~if~a~Gr~PlaG 166 (508)
T PRK11339 89 APLGAILALVLGAGLAE-RVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMGALIFLAVGRHPVAG 166 (508)
T ss_pred CcHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 45677888888866663 89999999999999998888888887766655553 23333778999887777 556
Q ss_pred HHHHHH
Q 014701 87 SSLGWI 92 (420)
Q Consensus 87 ~~lg~~ 92 (420)
.+.++.
T Consensus 167 ia~~fa 172 (508)
T PRK11339 167 LLAAIA 172 (508)
T ss_pred HHHHHH
Confidence 666654
No 19
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=39.58 E-value=1.1e+02 Score=31.24 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHhhc---hhhhhhhhHHHHHhhc-ccccccchhhhh--HHHHHHHHHHHHHHH-H
Q 014701 17 VLLLTALGLFLALDRIDILGDLARQHLNK---VVFFVFNPALVGSSLA-DHITAEGIGMLW--FMPLNILITYIVGSS-L 89 (420)
Q Consensus 17 Vlli~~~G~~lA~~~~giL~~~~~k~ls~---lv~~vflP~LiFs~la-~~it~~~i~~~w--~ipv~~ll~~~~g~~-l 89 (420)
-..+...|+++. ..|+++++.....++ .+...+++.+++. ++ ...+++++.+.- ..-+ .++...+|.. .
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vv-iiv~~Vlg~ii~ 282 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVV-ICLSVVVAMILG 282 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhh-hHHHHHHHHHHH
Confidence 345667788888 899999987665544 4455577766652 33 346888888753 2222 2333344444 4
Q ss_pred HHHhHhhccCCC
Q 014701 90 GWIVLKTTKAPY 101 (420)
Q Consensus 90 g~~v~~i~~~P~ 101 (420)
++++.|+++.=+
T Consensus 283 s~lvGKllG~YP 294 (347)
T TIGR00783 283 GAFLGKLMGMYP 294 (347)
T ss_pred HHHHHHHhCCCh
Confidence 457888888755
No 20
>PRK11677 hypothetical protein; Provisional
Probab=39.36 E-value=32 Score=30.35 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhccCC
Q 014701 73 WFMPLNILITYIVGSSLGWIVLKTTKAP 100 (420)
Q Consensus 73 w~ipv~~ll~~~~g~~lg~~v~~i~~~P 100 (420)
|.+++ +.+++|.++|+++.|++...
T Consensus 3 W~~a~---i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYAL---IGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHH---HHHHHHHHHHHHHHhhccch
Confidence 55444 78889999999999975544
No 21
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=38.29 E-value=1.3e+02 Score=30.43 Aligned_cols=108 Identities=19% Similarity=0.080 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHH-HHHHHHHHHHHHHH
Q 014701 11 FIPVLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFM-PLNILITYIVGSSL 89 (420)
Q Consensus 11 ~~pvlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~i-pv~~ll~~~~g~~l 89 (420)
.++.+.+++-..+|.++. =+|+|.||.+++-. .+..|-+-| .++..++++++.+=..- .+-.++.+.+....
T Consensus 168 ~~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG-----NLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 578888999999999886 38999999999864 566777776 59999999999887632 22234445555555
Q ss_pred HHHhHhhc-cCCCcccceeeEEEecCChhhHHHHHHHHH
Q 014701 90 GWIVLKTT-KAPYDLWGLVLGCCAAGNLGNMLFIIIPAI 127 (420)
Q Consensus 90 g~~v~~i~-~~P~~~~~~~v~a~~fgN~~~LPl~li~sl 127 (420)
.++.-|.. |=+. .-+.=..+..||.-.-|-++-++-
T Consensus 241 ~~~~dr~i~~~~g--~aG~A~sstAGnavatPaaiA~~d 277 (314)
T PF03812_consen 241 LYLADRLILKGNG--VAGAAISSTAGNAVATPAAIAAAD 277 (314)
T ss_pred HHHHHHHHcCCCC--ceeehHHhhhhhhhhhhHHHHHhC
Confidence 66666653 3221 113334567899999998776543
No 22
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=38.04 E-value=6.8 Score=42.97 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=64.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHhHhhccC--CCcccceeeEEEecCChhhHHHHHHHHHhhcC-CCCCCChhHHh
Q 014701 66 AEGIGMLWFMPLNILITYIVGSSLGWIVLKTTKA--PYDLWGLVLGCCAAGNLGNMLFIIIPAICKER-GSPFGDADACY 142 (420)
Q Consensus 66 ~~~i~~~w~ipv~~ll~~~~g~~lg~~v~~i~~~--P~~~~~~~v~a~~fgN~~~LPl~li~sl~~~~-~~pfg~~~~~~ 142 (420)
.+++-+||+..+ .+++.++|..++...+- .-++. +++.||+++=...+|+.++||..++. |. +.-.
T Consensus 438 YKeVP~WWf~~i-----li~s~~l~~~~~~~~~~~~q~PwW-g~~va~~ia~vf~iPigii~AtTNq~~GL-----Niit 506 (761)
T KOG2262|consen 438 YKEVPDWWFLAI-----LIVSLGLGLAACEGYKTQVQLPWW-GLLVACAIAFVFTIPIGIIQATTNQTPGL-----NIIT 506 (761)
T ss_pred hccCcHHHHHHH-----HHHHHHHHhhheeeecccccCchH-HHHHHHHHHHHHhccHHHhhhhccCCccH-----HHHH
Confidence 677778888655 33455555566655554 33444 45678888899999999999997753 32 2344
Q ss_pred hhhhHHHHHHHHhhhhhhheeecceee
Q 014701 143 RQGMVYSALSMAIGAIYMWSYVYNIVR 169 (420)
Q Consensus 143 ~~g~aYi~~~~~~~~i~~wt~g~~ll~ 169 (420)
|.=..|+.=.-.+.++++-+|||.-++
T Consensus 507 E~i~Gy~~PgrPiAn~~FK~yGyism~ 533 (761)
T KOG2262|consen 507 EYIIGYIYPGRPIANLCFKTYGYISMT 533 (761)
T ss_pred HHHHHhhcCCchHHHHHHHHhchhhHH
Confidence 455666666668899999999997554
No 23
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=35.69 E-value=71 Score=33.05 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhcc-CCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 014701 14 VLKVLLLTALGLFLALDR-IDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLNILITYIVGSSLGWI 92 (420)
Q Consensus 14 vlkVlli~~~G~~lA~~~-~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~~ll~~~~g~~lg~~ 92 (420)
..-+++++.+|...+..| ++.+ .....++....++| |.-+|..-+.+++.+-..+.+.+++...+-.++-++
T Consensus 240 ~~~il~~tt~~l~~~~~~~~~~l--~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATSFPPFRKLL--RGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHhccchhhcC--CchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 446677777887766322 2333 56666776666654 788899999999999555666677777888888889
Q ss_pred hHhhccCCCcccceeeEEEecCChhhHHHHHHHHHh
Q 014701 93 VLKTTKAPYDLWGLVLGCCAAGNLGNMLFIIIPAIC 128 (420)
Q Consensus 93 v~~i~~~P~~~~~~~v~a~~fgN~~~LPl~li~sl~ 128 (420)
+.|++|.|. ..+.-++=.|+|.-+.+-+.|-.
T Consensus 313 ~~kl~k~~l----~~~~vAS~AnIGGpaTA~a~A~a 344 (378)
T PF05684_consen 313 LGKLFKIDL----FELLVASNANIGGPATAPAVAAA 344 (378)
T ss_pred HHHHHCCCH----HHHHHHhhcccCCcchHHHHHHh
Confidence 999999988 55555566666666666444443
No 24
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=34.16 E-value=1.6e+02 Score=29.48 Aligned_cols=97 Identities=21% Similarity=0.198 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHH--HhhchhhhhhhhHHHHHhhcccccc---cch--hhhhHHHHHHHHHHHH
Q 014701 13 PVLKVLLLTALGLFLALDRIDILGDLARQ--HLNKVVFFVFNPALVGSSLADHITA---EGI--GMLWFMPLNILITYIV 85 (420)
Q Consensus 13 pvlkVlli~~~G~~lA~~~~giL~~~~~k--~ls~lv~~vflP~LiFs~la~~it~---~~i--~~~w~ipv~~ll~~~~ 85 (420)
=++++++-..+|-.+. | .+.+...| ..-+.+=...+-.++++....+... +++ .....+-...+....+
T Consensus 163 L~~~vllP~~~Gq~~r--~--~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLR--R--WVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLV 238 (313)
T ss_pred HHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHH
Confidence 3456777777786554 2 23332221 1222223333445566666555321 122 2333444445666788
Q ss_pred HHHHHHHhHhhccCCCcccceeeEEEec
Q 014701 86 GSSLGWIVLKTTKAPYDLWGLVLGCCAA 113 (420)
Q Consensus 86 g~~lg~~v~~i~~~P~~~~~~~v~a~~f 113 (420)
...++|...|.++.+++.|--++.|++-
T Consensus 239 ~l~~~~~~~r~~~~~~~d~iA~~F~gs~ 266 (313)
T PF13593_consen 239 VLVLGWLAARLLGFSRPDRIAVLFCGSQ 266 (313)
T ss_pred HHHHHHHHHhhcCCChhhEEEEEEEcCc
Confidence 8899999999999999988666666553
No 25
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.29 E-value=58 Score=24.41 Aligned_cols=26 Identities=31% Similarity=0.706 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhcc
Q 014701 73 WFMPLNILITYIVGSSLGWIVLKTTK 98 (420)
Q Consensus 73 w~ipv~~ll~~~~g~~lg~~v~~i~~ 98 (420)
+++.+.+++++++|+++||++.....
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788888999999998876543
No 26
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=30.91 E-value=49 Score=36.03 Aligned_cols=152 Identities=15% Similarity=0.044 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC--CHH---H-----------HHHhhchhhhhhhhHHHHHhhccccc---ccchh
Q 014701 10 AFIPVLKVLLLTALGLFLALDRIDIL--GDL---A-----------RQHLNKVVFFVFNPALVGSSLADHIT---AEGIG 70 (420)
Q Consensus 10 a~~pvlkVlli~~~G~~lA~~~~giL--~~~---~-----------~k~ls~lv~~vflP~LiFs~la~~it---~~~i~ 70 (420)
.-+|++-+++++++|+++. |..+= +=- + .-.++..+-++++= |-..-++-+.- +++++
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~-lFvy~vG~~~Gp~Ff~~l~ 84 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFA-LFIFAIGYEVGPQFFASLK 84 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHH-HHHHHhhhccCHHHHHHHH
Confidence 4589999999999999988 53331 000 0 00122222222221 11122222221 23444
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHhHhhccCCCcccceeeEEEecCChhhHHHHHHHHHhhcCCCCCCC-------hhHHh
Q 014701 71 M-LWFMPLNILITYIVGSSLGWIVLKTTKAPYDLWGLVLGCCAAGNLGNMLFIIIPAICKERGSPFGD-------ADACY 142 (420)
Q Consensus 71 ~-~w~ipv~~ll~~~~g~~lg~~v~~i~~~P~~~~~~~v~a~~fgN~~~LPl~li~sl~~~~~~pfg~-------~~~~~ 142 (420)
+ =|..-+.+++..++|.++.|+..|++..|...--+ +.|++.-|+-.|=-+ .+++.+- + .++ .+.+.
T Consensus 85 ~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~G-l~aGalT~tp~l~aA-~~a~~~~-~--~~~~~~~~~~~~~av 159 (562)
T TIGR03802 85 KDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAG-LAAGGLTQSAVIGTA-GDAIEKL-G--LSPEQKTAYQGNVAV 159 (562)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHhchhhccHHHHHH-HHHHHhc-C--CCcchhhccccccce
Confidence 4 25555667777788999999999999999844333 345566666666444 5666431 1 111 12345
Q ss_pred hhhhHHHHHHHHhhhhhhhe-eecceeecc
Q 014701 143 RQGMVYSALSMAIGAIYMWS-YVYNIVRIY 171 (420)
Q Consensus 143 ~~g~aYi~~~~~~~~i~~wt-~g~~ll~~~ 171 (420)
..+++|.. -.+|.++... ..++++|.+
T Consensus 160 gYav~Ypf--Gvig~i~~~~~~~p~l~~~~ 187 (562)
T TIGR03802 160 AYAVTYIF--GTIGVIIVLVNILPWLMGID 187 (562)
T ss_pred eeehhhhh--HHHHHHHHHHHHHHHHhCCC
Confidence 55666652 2355564333 345566654
No 27
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.88 E-value=45 Score=28.96 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhHhhccCC
Q 014701 79 ILITYIVGSSLGWIVLKTTKAP 100 (420)
Q Consensus 79 ~ll~~~~g~~lg~~v~~i~~~P 100 (420)
+++.+++|+++|+++.|.+.-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5678899999999999987655
No 28
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=30.41 E-value=4.5e+02 Score=27.03 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=56.8
Q ss_pred HHHhhcccccccchhhhhH--HHH--HHHHHHHHHHHHHHHhHhhccCCCcccceeeE----EEecCChhhHHHHHHHHH
Q 014701 56 VGSSLADHITAEGIGMLWF--MPL--NILITYIVGSSLGWIVLKTTKAPYDLWGLVLG----CCAAGNLGNMLFIIIPAI 127 (420)
Q Consensus 56 iFs~la~~it~~~i~~~w~--ipv--~~ll~~~~g~~lg~~v~~i~~~P~~~~~~~v~----a~~fgN~~~LPl~li~sl 127 (420)
.|+.++-.-+.+++++-|- .+. .+.+...+..++|..+.+++..++. .+.... .++.|..... =+..
T Consensus 73 fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhGTAaa~----g~~f 147 (368)
T PF03616_consen 73 FFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHGTAAAF----GPTF 147 (368)
T ss_pred HHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHhccccccCCccHHHHH----HHHH
Confidence 3667777777777766652 111 1223346778888888888887763 333222 1222322221 1222
Q ss_pred hhcCCCCCCChhHHhhhhhHHHHHHHHhhhhhhheeecceeecc
Q 014701 128 CKERGSPFGDADACYRQGMVYSALSMAIGAIYMWSYVYNIVRIY 171 (420)
Q Consensus 128 ~~~~~~pfg~~~~~~~~g~aYi~~~~~~~~i~~wt~g~~ll~~~ 171 (420)
.+. +|- +.+.+-|+++.-+....|.++-=-++-+++|+.
T Consensus 148 e~~----~G~-~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~ 186 (368)
T PF03616_consen 148 EEL----YGW-EGATSVGMAAATFGLVVGGLIGGPIANWLIRKG 186 (368)
T ss_pred HHh----cCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 211 221 347888999988888766664322333355554
No 29
>COG2323 Predicted membrane protein [Function unknown]
Probab=29.25 E-value=1.5e+02 Score=28.36 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 014701 14 VLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLNILITYIVGSSLGWIV 93 (420)
Q Consensus 14 vlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~~ll~~~~g~~lg~~v 93 (420)
++|-+++..+++++. | -.+||++|++...=|.=.++...++.....++=...|...+.+++..++..++.|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776 5 567899999999999999999999999988887777777776777778888888887
Q ss_pred HhhccCCC
Q 014701 94 LKTTKAPY 101 (420)
Q Consensus 94 ~~i~~~P~ 101 (420)
.|--++-+
T Consensus 81 ~ks~~~r~ 88 (224)
T COG2323 81 LKSRKLRK 88 (224)
T ss_pred hccHHHHH
Confidence 76655444
No 30
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.30 E-value=91 Score=24.40 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHh
Q 014701 71 MLWFMPLNILITYIVGSSLGWIVLK 95 (420)
Q Consensus 71 ~~w~ipv~~ll~~~~g~~lg~~v~~ 95 (420)
++|...+.+++..++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566568888888999999987764
No 31
>PRK03818 putative transporter; Validated
Probab=28.21 E-value=87 Score=34.06 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=67.9
Q ss_pred CCC-CCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhh-hhHHHHHHHHHHHHHHHHHHHhHhhccCCCcccceeeE
Q 014701 32 IDI-LGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGM-LWFMPLNILITYIVGSSLGWIVLKTTKAPYDLWGLVLG 109 (420)
Q Consensus 32 ~gi-L~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~-~w~ipv~~ll~~~~g~~lg~~v~~i~~~P~~~~~~~v~ 109 (420)
.|+ .++.+...+.++-+.+|+=|. -.+-++++ .+++++ =|-..+..++.++++.+++|+..++++.|. ...+
T Consensus 50 ~~~~~~~~~~~~~~~~gl~lFv~~v-Gl~~Gp~f-~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 123 (552)
T PRK03818 50 FGLTLDSDMLHFIQEFGLILFVYTI-GIQVGPGF-FSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL----PVML 123 (552)
T ss_pred cCcccChHHHHHHHHHHHHHHHHHH-hhcccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHH
Confidence 344 455555556666666666543 22333333 223444 345556678888999999999999999998 3333
Q ss_pred EEecCChhhHHH-HH-HHHHhhcCCCC-CCChhHHhhhhhHHHHHHHHhhhhhhheeecceeecc
Q 014701 110 CCAAGNLGNMLF-II-IPAICKERGSP-FGDADACYRQGMVYSALSMAIGAIYMWSYVYNIVRIY 171 (420)
Q Consensus 110 a~~fgN~~~LPl-~l-i~sl~~~~~~p-fg~~~~~~~~g~aYi~~~~~~~~i~~wt~g~~ll~~~ 171 (420)
....|-.+|=|- .- .+++.+ .+.. -..++.+...+++|.. -.++.++.-.+.+++++.+
T Consensus 124 G~~aGa~T~tp~l~aa~~~~~~-~~~~~~~~~~~a~gYa~~Yp~--g~i~~il~~~~~~~~~~~~ 185 (552)
T PRK03818 124 GIFSGAVTNTPALGAGQQILRD-LGTPGDLVDQMGMGYAMAYPF--GICGILLSMWLIRLIFRIN 185 (552)
T ss_pred HHhhccccccHHHHHHHHHHhc-cCCCccccCCcchhhHhHhHH--HHHHHHHHHHHHHHHhCCC
Confidence 333333333332 22 233321 1110 0112234556666653 1244443333566666654
No 32
>PRK05326 potassium/proton antiporter; Reviewed
Probab=27.88 E-value=2.9e+02 Score=29.94 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=55.2
Q ss_pred HHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHH-HHHHHHHH-HHHHHHhHhhccC
Q 014701 22 ALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLN-ILITYIVG-SSLGWIVLKTTKA 99 (420)
Q Consensus 22 ~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~-~ll~~~~g-~~lg~~v~~i~~~ 99 (420)
..|..++ +......+..++..+-.-.++.|. .|..+|-.++++++.+.|..-+- +++...++ .+..++..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4565555 444444444444555555667755 79999999999988776432221 11222233 2333444566777
Q ss_pred CCcccceeeEEEecCChhhHHHHHHH
Q 014701 100 PYDLWGLVLGCCAAGNLGNMLFIIIP 125 (420)
Q Consensus 100 P~~~~~~~v~a~~fgN~~~LPl~li~ 125 (420)
|.+.+-. +.-+ |-=|..|+++-.
T Consensus 329 ~~~e~~~-i~~~--g~RG~v~i~lA~ 351 (562)
T PRK05326 329 NLREKLF-ISWV--GLRGAVPIVLAT 351 (562)
T ss_pred CHhhhhe-eeee--cchhHHHHHHHH
Confidence 7765533 3322 567888876653
No 33
>PRK04972 putative transporter; Provisional
Probab=27.70 E-value=96 Score=33.78 Aligned_cols=104 Identities=12% Similarity=-0.045 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC--------------------CCHHHHHHhhchhhhhhhhHHHHHhhcccccccchh
Q 014701 11 FIPVLKVLLLTALGLFLALDRIDI--------------------LGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIG 70 (420)
Q Consensus 11 ~~pvlkVlli~~~G~~lA~~~~gi--------------------L~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~ 70 (420)
-.|++-+.+++++|+++. |..+ +....-..+.++-+.+|+=|. -.+-++++ .++++
T Consensus 11 ~~~~~~lf~~i~lG~~lG--~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~v-G~~~Gp~F-~~~l~ 86 (558)
T PRK04972 11 GNYILLLFVVLALGLCLG--KLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCV-GVEAGPNF-FSIFF 86 (558)
T ss_pred cCChHHHHHHHHHHHhhh--ceEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-hhhhhHHH-HHHHH
Confidence 368888888888888887 4332 011111112233333443332 12222222 22334
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHHhHhhccCCCcccceeeEEEecCChhhH
Q 014701 71 ML-WFMPLNILITYIVGSSLGWIVLKTTKAPYDLWGLVLGCCAAGNLGNM 119 (420)
Q Consensus 71 ~~-w~ipv~~ll~~~~g~~lg~~v~~i~~~P~~~~~~~v~a~~fgN~~~L 119 (420)
+- |-.-+..++.++++.++++...|+++.+...--+ +.|++.-|+-.|
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~aGa~T~tp~l 135 (558)
T PRK04972 87 RDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAG-MLAGSMTSTPVL 135 (558)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HhhccccCcHHH
Confidence 32 4455567778889999999999999999833322 345555555554
No 34
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=25.07 E-value=2.4e+02 Score=29.38 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=56.2
Q ss_pred CCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHHhHhhcc-CCCcccceeeEEEec
Q 014701 35 LGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPLNILITYIVGSSLGWIVLKTTK-APYDLWGLVLGCCAA 113 (420)
Q Consensus 35 L~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv~~ll~~~~g~~lg~~v~~i~~-~P~~~~~~~v~a~~f 113 (420)
++.+..+.++.+...+|+=+=+. ++.+.++.++| +|+-+++...+....-+...-.+| .+|++..-+++++-+
T Consensus 270 ~~~~~i~~I~~~sLdlfl~~Alm-----sL~L~~l~~~a-~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~ 343 (398)
T TIGR00210 270 VAERAVSVIGNVSLSLFLAIALM-----SLQLWELADLA-GPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHC 343 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccc
Confidence 44458888999998888765443 47777888886 355444433333333223233344 567788887777666
Q ss_pred CC-hhhHHHH--HHHHHhhc
Q 014701 114 GN-LGNMLFI--IIPAICKE 130 (420)
Q Consensus 114 gN-~~~LPl~--li~sl~~~ 130 (420)
|- .|.=|.+ .++|+|+.
T Consensus 344 G~~lGatptaianm~av~~~ 363 (398)
T TIGR00210 344 GFGLGATPTAIANMQAVTER 363 (398)
T ss_pred cccccchHHHHHHHHHHHhc
Confidence 64 4666655 56999874
No 35
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=24.98 E-value=1.3e+02 Score=30.47 Aligned_cols=100 Identities=19% Similarity=0.088 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhh-hHHHHHHHHHHHHHHHHHHHh
Q 014701 15 LKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGML-WFMPLNILITYIVGSSLGWIV 93 (420)
Q Consensus 15 lkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~-w~ipv~~ll~~~~g~~lg~~v 93 (420)
+++++...+|..+. | ++++-++..++= .++.+|+-.|. +|.+++.+++.+- +..++-.+...++...+++.+
T Consensus 174 i~allplliG~~lg----n-l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG----N-LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH----h-HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 56668999998887 5 777777666654 44599999888 9999999999777 455554555555566667777
Q ss_pred HhhccCCCcccceeeEEEecCChhhHHHH
Q 014701 94 LKTTKAPYDLWGLVLGCCAAGNLGNMLFI 122 (420)
Q Consensus 94 ~~i~~~P~~~~~~~v~a~~fgN~~~LPl~ 122 (420)
-|+++..+...+ +-...+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g-~a~~ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAG-AAAGSTAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcch-HHHHHHHHHHHHHHHH
Confidence 788865443222 2233455666555555
No 36
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=24.89 E-value=1.2e+02 Score=22.69 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014701 7 FIAAFIPVLKVLLLTALGLFL 27 (420)
Q Consensus 7 i~~a~~pvlkVlli~~~G~~l 27 (420)
+-+-..|++.|.++.++||+.
T Consensus 24 l~~~l~PiL~v~~Vg~YGF~V 44 (56)
T PF06796_consen 24 LAVVLFPILAVAFVGGYGFIV 44 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999764
No 37
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=24.76 E-value=1.3e+02 Score=26.80 Aligned_cols=47 Identities=19% Similarity=0.406 Sum_probs=35.1
Q ss_pred HHHHhhcccccccchhh---hhH-HHHHHHHHHHHHHHHHHHhHhhccCCC
Q 014701 55 LVGSSLADHITAEGIGM---LWF-MPLNILITYIVGSSLGWIVLKTTKAPY 101 (420)
Q Consensus 55 LiFs~la~~it~~~i~~---~w~-ipv~~ll~~~~g~~lg~~v~~i~~~P~ 101 (420)
++-..+|.++|.+++++ +|. .-+..+++.+++.+.+|+..|.++.|.
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 35678899998766554 443 445456666889999999999999887
No 38
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=23.96 E-value=1.1e+02 Score=31.46 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=34.8
Q ss_pred HHHHhhcccccccc---hhhhhHHHHHHHH-HHHHHHHHHHHhHhhccCCC
Q 014701 55 LVGSSLADHITAEG---IGMLWFMPLNILI-TYIVGSSLGWIVLKTTKAPY 101 (420)
Q Consensus 55 LiFs~la~~it~~~---i~~~w~ipv~~ll-~~~~g~~lg~~v~~i~~~P~ 101 (420)
.+-..+|.++|.++ +++.|++-+..++ +..+|..+||+..|.-+.|+
T Consensus 66 ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~ 116 (352)
T COG3180 66 ILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPG 116 (352)
T ss_pred HHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45567888887654 5666766655554 44889999999999998887
No 39
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=23.90 E-value=1.4e+02 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014701 6 LFIAAFIPVLKVLLLTALGLFL 27 (420)
Q Consensus 6 li~~a~~pvlkVlli~~~G~~l 27 (420)
.+.+-..|++.|.++.++||+.
T Consensus 15 fl~v~l~PiLsV~~Vg~YGF~v 36 (47)
T TIGR02972 15 FIIVVLFPILSVAGIGGYGFII 36 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999764
No 40
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=23.79 E-value=1.2e+02 Score=27.34 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=58.8
Q ss_pred HHHHHHHHHHH---------HHHHHHHhccCCCCCHHHHH----HhhchhhhhhhhHHHHHhhcccccccchhhhhHHHH
Q 014701 11 FIPVLKVLLLT---------ALGLFLALDRIDILGDLARQ----HLNKVVFFVFNPALVGSSLADHITAEGIGMLWFMPL 77 (420)
Q Consensus 11 ~~pvlkVlli~---------~~G~~lA~~~~giL~~~~~k----~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~ipv 77 (420)
+..+++.++-. ..|++++ |++=+.++| .+..+.-+-..=+++-.-+++-+.-++...+.++|-
T Consensus 53 ~~sliR~~lg~Gt~lAfPGsm~GA~la----Gllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g~~~~~~~~v~~ 128 (150)
T PF09512_consen 53 ITSLIRNLLGTGTLLAFPGSMFGALLA----GLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMGKEAALFFFVPP 128 (150)
T ss_pred HHHHHHHHhCCCCHHHhccchHHHHHH----HHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhCCchhhhhhHHH
Confidence 44556665532 3566666 566555555 356667777778888888888887677666666666
Q ss_pred HHHHHHHHHHHHHHHhHhhcc
Q 014701 78 NILITYIVGSSLGWIVLKTTK 98 (420)
Q Consensus 78 ~~ll~~~~g~~lg~~v~~i~~ 98 (420)
.+..++.|..+|+++.+.+|
T Consensus 129 -F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 129 -FLISTLIGAIIGYILLKALK 148 (150)
T ss_pred -HHHHHHHHHHHHHHHHHHHh
Confidence 77889999999999988765
No 41
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=22.95 E-value=2.4e+02 Score=29.16 Aligned_cols=65 Identities=8% Similarity=-0.045 Sum_probs=49.6
Q ss_pred HHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhHH-HHHHHHHHHHHHHHHHHhHhhccCCCc
Q 014701 37 DLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWFM-PLNILITYIVGSSLGWIVLKTTKAPYD 102 (420)
Q Consensus 37 ~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~i-pv~~ll~~~~g~~lg~~v~~i~~~P~~ 102 (420)
.+..+++..+-..+|.| +-|.++|-+++++.+.+.|.. .+-..+....=.+..|+..|.++.+++
T Consensus 264 ~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~ 329 (397)
T COG0475 264 HELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSKR 329 (397)
T ss_pred HHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 57888898888888888 679999999999999998877 333333334445557888899996654
No 42
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=22.89 E-value=2.6e+02 Score=28.24 Aligned_cols=107 Identities=16% Similarity=-0.005 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhhhH-HHHHHHHHHHHHHHH
Q 014701 11 FIPVLKVLLLTALGLFLALDRIDILGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGMLWF-MPLNILITYIVGSSL 89 (420)
Q Consensus 11 ~~pvlkVlli~~~G~~lA~~~~giL~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~w~-ipv~~ll~~~~g~~l 89 (420)
.+..+-.++-..+|+++. =||+|.||.+++-. .+..|-.-| .++..++++++.+=.. -.+-.++...+....
T Consensus 168 ~~~lv~~ilPlliG~ilG-----NLD~~~r~fl~~~~-~~lIpFf~F-aLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 168 PHVFVGAVLPFLVGFALG-----NLDPELRDFFSKAV-QTLIPFFAF-ALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHhccCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 466777888889999886 38999999998854 556677666 4899999999977643 333345566677777
Q ss_pred HHHhHhhccCCCcccceeeEEEecCChhhHHHHHHH
Q 014701 90 GWIVLKTTKAPYDLWGLVLGCCAAGNLGNMLFIIIP 125 (420)
Q Consensus 90 g~~v~~i~~~P~~~~~~~v~a~~fgN~~~LPl~li~ 125 (420)
.++.-|.+.=.+..- +.=+....||.-.-|-++-+
T Consensus 241 ~~~~dr~~~g~~g~a-G~A~sstAGnAvatPaavA~ 275 (314)
T TIGR00793 241 LILADKFIGGGDGTA-GIAASSSAGAAVATPVLIAE 275 (314)
T ss_pred HHHHHHHhcCCCCch-hhHHHHHHHHhhhhHHHHHH
Confidence 788888774111111 23334467888888866544
No 43
>PRK01844 hypothetical protein; Provisional
Probab=22.89 E-value=1.3e+02 Score=23.66 Aligned_cols=25 Identities=20% Similarity=0.607 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhh
Q 014701 72 LWFMPLNILITYIVGSSLGWIVLKT 96 (420)
Q Consensus 72 ~w~ipv~~ll~~~~g~~lg~~v~~i 96 (420)
.|+..+..++..++|.+.|+.+.|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555677888999999887653
No 44
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=22.62 E-value=1.6e+02 Score=20.78 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014701 7 FIAAFIPVLKVLLLTALGLFL 27 (420)
Q Consensus 7 i~~a~~pvlkVlli~~~G~~l 27 (420)
+-+-..|++.|.++.++||..
T Consensus 11 l~~~l~PiLsV~~V~~YGF~v 31 (42)
T TIGR02973 11 LAAVIWPVLSVITVGGYGFAV 31 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999764
No 45
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=22.29 E-value=83 Score=31.55 Aligned_cols=47 Identities=19% Similarity=0.014 Sum_probs=37.4
Q ss_pred hhcccccccchhhhhH-HHHHHHHHHHHHHHHHHHhH-hhccCCCcccc
Q 014701 59 SLADHITAEGIGMLWF-MPLNILITYIVGSSLGWIVL-KTTKAPYDLWG 105 (420)
Q Consensus 59 ~la~~it~~~i~~~w~-ipv~~ll~~~~g~~lg~~v~-~i~~~P~~~~~ 105 (420)
=+|-+++.+++.+.+. ..+-.++.......+++.+. |.+|+|++..-
T Consensus 68 LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~ 116 (305)
T PF03601_consen 68 LLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAI 116 (305)
T ss_pred HHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3789999999999987 33446666677888888888 99999997664
No 46
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=20.11 E-value=4.9e+02 Score=27.23 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=66.6
Q ss_pred HHHHHHHhccCCCCCHHHHHHhhchh-----hhhhhhHHHHHhhc---ccccccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 014701 22 ALGLFLALDRIDILGDLARQHLNKVV-----FFVFNPALVGSSLA---DHITAEGIGMLWFMPLNILITYIVGSSLGWIV 93 (420)
Q Consensus 22 ~~G~~lA~~~~giL~~~~~k~ls~lv-----~~vflP~LiFs~la---~~it~~~i~~~w~ipv~~ll~~~~g~~lg~~v 93 (420)
.+-.++. +.|+++++..|..++.. .++|.+||+.-++= +.+=.+..+.+ +|. +++..+.+.+.|-++
T Consensus 84 fvaa~~v--~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~--i~~-il~g~v~A~~~g~lV 158 (438)
T COG3493 84 FVAAYLV--FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRY--IPP-ILAGMVGAAAVGILV 158 (438)
T ss_pred HHHHHHH--HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhh--hHH-HHHHHHHHHHHHHHH
Confidence 3334555 78999999999998775 57899999987652 23335566666 333 445555566666666
Q ss_pred HhhccCCC--cccceeeEEEecCC-hhhHHHHHHHHH
Q 014701 94 LKTTKAPY--DLWGLVLGCCAAGN-LGNMLFIIIPAI 127 (420)
Q Consensus 94 ~~i~~~P~--~~~~~~v~a~~fgN-~~~LPl~li~sl 127 (420)
..++..+. ..-+.+++-.+=|| -|.+|++.+-|=
T Consensus 159 G~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs~ 195 (438)
T COG3493 159 GLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYSS 195 (438)
T ss_pred HHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHHH
Confidence 66666554 34555566555555 488999988553
Done!