Query 014701
Match_columns 420
No_of_seqs 109 out of 220
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:16:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.3 0.00087 3E-08 66.2 10.0 135 263-416 21-156 (332)
2 3zux_A Transporter, ASBTNM; tr 82.5 2.1 7E-05 41.9 6.5 78 76-161 231-308 (332)
3 2k1a_A Integrin alpha-IIB; sin 12.8 3.3E+02 0.011 18.1 4.7 34 321-358 5-38 (42)
4 1zcd_A Na(+)/H(+) antiporter 1 8.6 2.7E+02 0.0092 27.5 4.1 97 35-131 247-352 (388)
5 3rlb_A THIT; S-component, ECF 7.7 1.1E+03 0.036 20.6 7.9 81 261-351 62-145 (192)
6 4f4l_A ION transport protein; 7.7 4.1E+02 0.014 20.9 4.2 53 113-165 36-90 (112)
7 1q90_G Cytochrome B6F complex 7.6 1.6E+02 0.0054 19.2 1.2 12 267-278 6-17 (37)
8 1q90_M Cytochrome B6F complex 5.6 6.8E+02 0.023 16.4 4.1 23 75-97 9-31 (39)
9 3rvy_A ION transport protein; 5.6 4.6E+02 0.016 23.8 3.9 49 115-163 177-230 (285)
10 2knc_A Integrin alpha-IIB; tra 5.2 8.5E+02 0.029 17.0 4.6 36 319-358 5-40 (54)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.29 E-value=0.00087 Score=66.25 Aligned_cols=135 Identities=9% Similarity=-0.023 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhcchhHHhhhcCCCCCchhhhhHHHhhcCcchhhhhhhhcccccc-CCCcCCCCchHHHHHHHHHHHHHh
Q 014701 263 TIAAIIGFMVGIIPEFRKLLIGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLR-GLKGTRIQLSLIIGVIVIRYIALP 341 (420)
Q Consensus 263 ~ia~ilg~iig~ippLk~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~-g~~~s~l~~~~iv~i~~~RliilP 341 (420)
++..+++.++|..-|=. ..++... -...+.++++..|.++.. ..++..-.+|......+.+++++|
T Consensus 21 ~l~i~~~~~lg~~~P~~---------~~~~~~~----i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~P 87 (332)
T 3zux_A 21 SLWAALFAAAAFFAPDT---------FKWAGPY----IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMP 87 (332)
T ss_dssp HHHHHHHHHHHHHCGGG---------TGGGGGG----HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcchh---------hhhhHHH----HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 66677777777653321 1122222 224688999999999963 122222356778888999999999
Q ss_pred HHHHHHHHhhhhcCCCCCChhhhHHhhhccCCchHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014701 342 LLGVGIVKGAIHFGFVKSDPLYQFVLLLQFALPPAVNIGTMTQLFRAGESEYSVIMLWTYALASFSLTFWTTFFM 416 (420)
Q Consensus 342 iigv~iv~~~~~~g~~~~Dpv~~FVlll~~~~PpA~~l~~it~l~~~~e~e~s~ilfw~Y~~~~islt~~~~~fl 416 (420)
+++.++.+.. +.||.+...+++..+.|++.+...+|++.+....-.......+-+++++++|+|..+++
T Consensus 88 ll~~~l~~~~------~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 88 ATAWCLSKLL------NLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHT------TCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------CCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999988754 57999999999999999999988899988655444555566888999999999988775
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=82.47 E-value=2.1 Score=41.87 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccCCCcccceeeEEEecCChhhHHHHHHHHHhhcCCCCCCChhHHhhhhhHHHHHHHHh
Q 014701 76 PLNILITYIVGSSLGWIVLKTTKAPYDLWGLVLGCCAAGNLGNMLFIIIPAICKERGSPFGDADACYRQGMVYSALSMAI 155 (420)
Q Consensus 76 pv~~ll~~~~g~~lg~~v~~i~~~P~~~~~~~v~a~~fgN~~~LPl~li~sl~~~~~~pfg~~~~~~~~g~aYi~~~~~~ 155 (420)
-+..++.+.+++.+||.+.|.+|.+++.+.-+.-.|+..|++ +-+.+..+. |+++....--..-|-..-...
T Consensus 231 ~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~-lai~lA~~~-------F~~~p~~alp~~iy~~~q~i~ 302 (332)
T 3zux_A 231 FAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSG-LAAALAAAH-------FAAAPVVAVPGALFSVWHNIS 302 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHH-HHHHHHHHH-------STTCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHH-HHHHHHHHH-------cCCCchHHHHHHHHHHHHHHH
Confidence 344677789999999999999999998887777778899983 555554443 321111222334455555555
Q ss_pred hhhhhh
Q 014701 156 GAIYMW 161 (420)
Q Consensus 156 ~~i~~w 161 (420)
+.++.+
T Consensus 303 ~~~la~ 308 (332)
T 3zux_A 303 GSLLAT 308 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=12.78 E-value=3.3e+02 Score=18.13 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=24.9
Q ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCC
Q 014701 321 GTRIQLSLIIGVIVIRYIALPLLGVGIVKGAIHFGFVK 358 (420)
Q Consensus 321 ~s~l~~~~iv~i~~~RliilPiigv~iv~~~~~~g~~~ 358 (420)
...+|++.++..+++=++++.+ ++..++|.|++.
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~l----i~~~LwK~GFFk 38 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLTI----LVLAMWKVGFFK 38 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHH----HHHHHHHTTTTC
T ss_pred cCCcchHHHHHHHHHHHHHHHH----HHHHHHHcCccc
Confidence 3568889888888887776653 456677888876
No 4
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=8.63 E-value=2.7e+02 Score=27.49 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=61.7
Q ss_pred CCHHHHHHhhchhhhhhhhHHHHHhhcccccccchhhh-hHHHHHHHHHH----HHH-HHHHHHhHhhc--cCCCcccc-
Q 014701 35 LGDLARQHLNKVVFFVFNPALVGSSLADHITAEGIGML-WFMPLNILITY----IVG-SSLGWIVLKTT--KAPYDLWG- 105 (420)
Q Consensus 35 L~~~~~k~ls~lv~~vflP~LiFs~la~~it~~~i~~~-w~ipv~~ll~~----~~g-~~lg~~v~~i~--~~P~~~~~- 105 (420)
..++-.+.+...+..+++|-.-|.|.|=+++.+..... -+.++.+.+.- .+| +..+|+..|.. |.|+.+++
T Consensus 247 ~~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~ 326 (388)
T 1zcd_A 247 PAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQ 326 (388)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHH
Confidence 35677888999999999999999999999987432222 01111111111 333 23356665554 67776433
Q ss_pred eeeEEEecCChhhHHHHHHHHHhhcC
Q 014701 106 LVLGCCAAGNLGNMLFIIIPAICKER 131 (420)
Q Consensus 106 ~~v~a~~fgN~~~LPl~li~sl~~~~ 131 (420)
...+.+.-.|++-..=.++..+.-++
T Consensus 327 ~~~~vg~L~gigftmsL~Ia~laf~~ 352 (388)
T 1zcd_A 327 QIMVVGILCGIGFTMSIFIASLAFGS 352 (388)
T ss_dssp GGTTHHHHTTCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhccchHHHHHHHHHhccC
Confidence 45666777888877777778887643
No 5
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=7.72 E-value=1.1e+03 Score=20.64 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhhcchhHHhhhcCCCCCchhhhhHHHhhcCcchhhhhhhhccccccCCCcCCCCch---HHHHHHHHHH
Q 014701 261 PSTIAAIIGFMVGIIPEFRKLLIGEHAPLRVVEGSASLLGEASIPTVTLIVGANLLRGLKGTRIQLS---LIIGVIVIRY 337 (420)
Q Consensus 261 Pp~ia~ilg~iig~ippLk~lf~~~~~pL~~i~ds~~~lG~a~VPl~llvLGa~L~~g~~~s~l~~~---~iv~i~~~Rl 337 (420)
-|..|.+.|++-|++ +++.++...+++++.-++++ ++.+.+.+.|.+++ .++++.... ..+..++.|+
T Consensus 62 Gp~~G~~~g~i~gll----~~i~g~~~~~~p~q~lldy~----laf~~~GlaG~f~~-~~~~~~~~~~~lg~~ig~~~r~ 132 (192)
T 3rlb_A 62 GLTAGLVGGLIWGIL----SMITGHAYILSLSQAFLEYL----VAPVSLGIAGLFRQ-KTAPLKLAPVLLGTFVAVLLKY 132 (192)
T ss_dssp CHHHHHHHHHHHHHH----HHHTTCSCCSSHHHHHHHHT----HHHHHGGGGGGGCC-CSSSCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH----HHHhCCccccchHHHHHHHH----HHHHHHHHHHhhee-ccccccHHHHHHHHHHHHHHHH
Confidence 345555566655555 44444433455555555554 55666666677765 333333332 3456778899
Q ss_pred HHHhHHHHHHHHhh
Q 014701 338 IALPLLGVGIVKGA 351 (420)
Q Consensus 338 iilPiigv~iv~~~ 351 (420)
+.-=+-|+ +.++.
T Consensus 133 ~~~~isgv-vff~~ 145 (192)
T 3rlb_A 133 FFHFIAGI-IFWSQ 145 (192)
T ss_dssp HHHHHHHH-HHCGG
T ss_pred HHHHHHHH-HHHHh
Confidence 88877777 44443
No 6
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=7.68 E-value=4.1e+02 Score=20.91 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=28.9
Q ss_pred cCChhhHHHHHHHHHhhcCCC--CCCChhHHhhhhhHHHHHHHHhhhhhhheeec
Q 014701 113 AGNLGNMLFIIIPAICKERGS--PFGDADACYRQGMVYSALSMAIGAIYMWSYVY 165 (420)
Q Consensus 113 fgN~~~LPl~li~sl~~~~~~--pfg~~~~~~~~g~aYi~~~~~~~~i~~wt~g~ 165 (420)
|+|.++==+.+-|-++.|+=. -..+..+....+..|...+..+++.+.-..-.
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfi 90 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFI 90 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 677776666667777654211 01111111223556778788777776665533
No 7
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=7.60 E-value=1.6e+02 Score=19.17 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=8.0
Q ss_pred HHHHHhhcchhH
Q 014701 267 IIGFMVGIIPEF 278 (420)
Q Consensus 267 ilg~iig~ippL 278 (420)
+.|+++|+||-.
T Consensus 6 L~GIVlGlipvt 17 (37)
T 1q90_G 6 LCGIVLGLVPVT 17 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHhhHHHH
Confidence 567777777743
No 8
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=5.63 E-value=6.8e+02 Score=16.38 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhc
Q 014701 75 MPLNILITYIVGSSLGWIVLKTT 97 (420)
Q Consensus 75 ipv~~ll~~~~g~~lg~~v~~i~ 97 (420)
+..-+...+.+|..+|+++-|+-
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445566788999999988874
No 9
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=5.61 E-value=4.6e+02 Score=23.78 Aligned_cols=49 Identities=6% Similarity=-0.052 Sum_probs=27.3
Q ss_pred ChhhHHHHHHHHHhhcCCCCCC-Ch-hHHhhh---hhHHHHHHHHhhhhhhhee
Q 014701 115 NLGNMLFIIIPAICKERGSPFG-DA-DACYRQ---GMVYSALSMAIGAIYMWSY 163 (420)
Q Consensus 115 N~~~LPl~li~sl~~~~~~pfg-~~-~~~~~~---g~aYi~~~~~~~~i~~wt~ 163 (420)
|-+|+|-++..+..--.+.-+| |- ..+.+. |.-|+..+..++++.....
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl 230 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINL 230 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHH
Confidence 5777777777554443334455 42 123332 3467777777776665544
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.21 E-value=8.5e+02 Score=16.99 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCcCCCCchHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCC
Q 014701 319 LKGTRIQLSLIIGVIVIRYIALPLLGVGIVKGAIHFGFVK 358 (420)
Q Consensus 319 ~~~s~l~~~~iv~i~~~RliilPiigv~iv~~~~~~g~~~ 358 (420)
.+...+|++.++..+++=++++.++ ++.++|.|++.
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~li----~~~LwK~GFFk 40 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTIL----VLAMWKVGFFK 40 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHTT
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHH----HHHHHHcCccc
Confidence 3445689999888888877776644 34445555544
Done!