Query 014701
Match_columns 420
No_of_seqs 109 out of 220
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 16:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014701.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014701hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 18.5 25 0.0018 20.6 1.5 29 256-284 5-33 (34)
2 d1q90g_ f.23.26.1 (G:) PetG su 6.8 89 0.0065 17.7 1.2 12 267-278 6-17 (30)
3 d1tm9a_ a.225.1.1 (A:) Hypothe 4.7 2.2E+02 0.016 21.0 2.6 18 342-359 95-112 (137)
4 d1q90r_ f.23.12.1 (R:) ISP sub 3.9 2E+02 0.014 17.4 1.5 28 256-283 10-37 (39)
5 d1v54l_ f.23.6.1 (L:) Mitochon 3.3 5.4E+02 0.04 15.8 3.7 28 69-96 14-41 (46)
6 d1tbaa_ a.15.1.1 (A:) TAF(II)2 2.8 1.8E+02 0.013 19.5 0.5 14 34-47 37-50 (67)
7 d1lghb_ f.3.1.1 (B:) Light-har 2.8 6.1E+02 0.044 15.3 4.1 37 63-99 5-41 (43)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 2.8 2.9E+02 0.021 15.1 1.3 20 145-164 3-22 (30)
9 d1eija_ a.5.6.1 (A:) Hypotheti 2.4 3.1E+02 0.022 18.7 1.5 15 33-47 15-29 (72)
10 d1jo5a_ f.3.1.1 (A:) Light-har 2.1 5.6E+02 0.041 15.9 2.3 37 63-99 10-46 (48)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.50 E-value=25 Score=20.57 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=24.8
Q ss_pred ccccChhHHHHHHHHHhhcchhHHhhhcC
Q 014701 256 RKLFAPSTIAAIIGFMVGIIPEFRKLLIG 284 (420)
Q Consensus 256 ~~~~~Pp~ia~ilg~iig~ippLk~lf~~ 284 (420)
++|||=-+.|.+.|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 66777779999999999999998888763
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.78 E-value=89 Score=17.67 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=8.5
Q ss_pred HHHHHhhcchhH
Q 014701 267 IIGFMVGIIPEF 278 (420)
Q Consensus 267 ilg~iig~ippL 278 (420)
+.|++.|+||--
T Consensus 6 l~GivlGlipiT 17 (30)
T d1q90g_ 6 LCGIVLGLVPVT 17 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHhhHHHH
Confidence 567788888853
No 3
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=4.69 E-value=2.2e+02 Score=20.96 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhhcCCCCC
Q 014701 342 LLGVGIVKGAIHFGFVKS 359 (420)
Q Consensus 342 iigv~iv~~~~~~g~~~~ 359 (420)
+|-.-+.+.++|+|++.|
T Consensus 95 aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 95 AIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHTTCSCC
T ss_pred eehhhHHHHHHHhccccc
Confidence 333445678899999885
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.91 E-value=2e+02 Score=17.40 Aligned_cols=28 Identities=4% Similarity=0.026 Sum_probs=21.6
Q ss_pred ccccChhHHHHHHHHHhhcchhHHhhhc
Q 014701 256 RKLFAPSTIAAIIGFMVGIIPEFRKLLI 283 (420)
Q Consensus 256 ~~~~~Pp~ia~ilg~iig~ippLk~lf~ 283 (420)
|++||=-+.|++.+-..|+.-|.-+.|+
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccchhhhhhccceeEEec
Confidence 5556666888888888888888777776
No 5
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.32 E-value=5.4e+02 Score=15.76 Aligned_cols=28 Identities=7% Similarity=0.258 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHhh
Q 014701 69 IGMLWFMPLNILITYIVGSSLGWIVLKT 96 (420)
Q Consensus 69 i~~~w~ipv~~ll~~~~g~~lg~~v~~i 96 (420)
+.+=|-+-.-..+.++.|++.-++++|-
T Consensus 14 v~Nk~rLla~m~~~fGsgfa~PF~ivRh 41 (46)
T d1v54l_ 14 VENKWRLLAMMTLFFGSGFAAPFFIVRH 41 (46)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccchHHHHHH
Confidence 4555666666788889999988888764
No 6
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.83 E-value=1.8e+02 Score=19.52 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=12.8
Q ss_pred CCCHHHHHHhhchh
Q 014701 34 ILGDLARQHLNKVV 47 (420)
Q Consensus 34 iL~~~~~k~ls~lv 47 (420)
+||++.+|+++.+.
T Consensus 37 ~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 37 GFDAELRENIGSLS 50 (67)
T ss_dssp SCCTTTHHHHTTCT
T ss_pred ccCHHHHHHHHHHh
Confidence 89999999999876
No 7
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.80 E-value=6.1e+02 Score=15.33 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=27.6
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHhHhhccC
Q 014701 63 HITAEGIGMLWFMPLNILITYIVGSSLGWIVLKTTKA 99 (420)
Q Consensus 63 ~it~~~i~~~w~ipv~~ll~~~~g~~lg~~v~~i~~~ 99 (420)
-+|-++.+|.-=+.+.....|..-++++.+++.+.||
T Consensus 5 GLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 5 GLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777777777777777777888888877664
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.80 E-value=2.9e+02 Score=15.15 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=14.1
Q ss_pred hhHHHHHHHHhhhhhhheee
Q 014701 145 GMVYSALSMAIGAIYMWSYV 164 (420)
Q Consensus 145 g~aYi~~~~~~~~i~~wt~g 164 (420)
.++|+.+|.-+-+.++|..-
T Consensus 3 ~i~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHH
Confidence 37899988877666666543
No 9
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.45 E-value=3.1e+02 Score=18.66 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=10.6
Q ss_pred CCCCHHHHHHhhchh
Q 014701 33 DILGDLARQHLNKVV 47 (420)
Q Consensus 33 giL~~~~~k~ls~lv 47 (420)
.+|++++|..||++-
T Consensus 15 qiLt~eAreRL~~i~ 29 (72)
T d1eija_ 15 QILTPEARSRLANLR 29 (72)
T ss_dssp TTCCHHHHHHHHHHT
T ss_pred HHcCHHHHHHHHhhh
Confidence 577777777777653
No 10
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.12 E-value=5.6e+02 Score=15.90 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=25.8
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHhHhhccC
Q 014701 63 HITAEGIGMLWFMPLNILITYIVGSSLGWIVLKTTKA 99 (420)
Q Consensus 63 ~it~~~i~~~w~ipv~~ll~~~~g~~lg~~v~~i~~~ 99 (420)
-+|-++.+|+-=+-+.....|..-++++.+++.+.||
T Consensus 10 GLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 10 GLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp GGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566677777666666667777777777777777664
Done!