BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014705
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain
Length = 208
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 320 QVKTWAQLLNTFC-TNAKLELELMYKVQ-MQCYEDAKLMKLFPEIVRSLYDQDVLAEDTI 377
Q+K + + FC N K + L++ ++ + A+L+ P I++ +YD D+L E+ I
Sbjct: 61 QIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVI 120
Query: 378 LYWFRKGTNPKGRQTFVKAL----EPFVKWLEEA 407
+ W K + + K + EPF+KWL+EA
Sbjct: 121 ISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEA 154
>pdb|3JUI|A Chain A, Crystal Structure Of The C-terminal Domain Of Human
Translation Initiation Factor Eif2b Epsilon Subunit
Length = 182
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 321 VKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYW 380
+K W+ + + A LE + ++ E L +++ + Y ++LA +TIL W
Sbjct: 86 LKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISXAKVLXAFYQLEILAGETILSW 145
Query: 381 F-RKGTNPKGRQTFV-KALEPFVKWLE 405
F ++ T KG+Q + L+ F++WL+
Sbjct: 146 FSQRDTTDKGQQLRKNQQLQRFIQWLK 172
>pdb|2FUL|A Chain A, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|B Chain B, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|C Chain C, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|D Chain D, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|E Chain E, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
pdb|2FUL|F Chain F, Crystal Structure Of The C-Terminal Domain Of S.
Cerevisiae Eif5
Length = 177
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 351 EDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTN---PKGRQTFV-KALEPFVKWLEE 406
E L+ L P+I+ LY+ D+++E+ I+ + K + PK V +A +PF+ WLE
Sbjct: 100 EHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLET 159
Query: 407 A 407
A
Sbjct: 160 A 160
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi
pdb|1UG3|B Chain B, C-Terminal Portion Of Human Eif4gi
Length = 339
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 276 SVKQRVKD---AKLPDIEVV-RILWDILMDAVQWSGKXXXXXXXXXLRQVKTWAQLLNTF 331
S QRV D A L + ++V L LM AV +S + +K A+LL +
Sbjct: 223 SSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKY 282
Query: 332 CTNAKLELELMYKVQ---MQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYW 380
+ + EL+ +Y +Q + + L+++F +LYD+DV+ ED W
Sbjct: 283 LCDEQKELQALYALQALVVTLEQPPNLLRMF---FDALYDEDVVKEDAFYSW 331
>pdb|1PAQ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Eukaryotic
Initiation Factor 2b Epsilon
Length = 189
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 344 KVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRK-GTNPKGRQTFVKALE-PFV 401
K+ Q ++ L+ LF +V SLYD D++ ED I W+ T+P+ + VK L +V
Sbjct: 119 KIVEQSFDKPDLI-LFSALV-SLYDNDIIEEDVIYKWWDNVSTDPRYDE--VKKLTVKWV 174
Query: 402 KWLEEAE 408
+WL+ A+
Sbjct: 175 EWLQNAD 181
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 349 CYEDAKLMKLFPEIVRSLYD-QDVLAEDTIL 378
C++D + +FPE+ S Y +DVL +D++L
Sbjct: 41 CHDDGAALAVFPELTLSGYSIEDVLLQDSLL 71
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 349 CYEDAKLMKLFPEIVRSLYD-QDVLAEDTIL 378
C++D + +FPE+ S Y +DVL +D++L
Sbjct: 41 CHDDGAALAVFPELTLSGYSIEDVLLQDSLL 71
>pdb|1VSW|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
Length = 153
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 170 LLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLD 216
+ + +LVG GL + + F E++ L + LKR +E+N +D
Sbjct: 2 VFEGHLVGTGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEENDID 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,047,424
Number of Sequences: 62578
Number of extensions: 485788
Number of successful extensions: 1512
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1505
Number of HSP's gapped (non-prelim): 18
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)