Query 014705
Match_columns 420
No_of_seqs 228 out of 606
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l6a_A Eukaryotic translation 100.0 4.6E-45 1.6E-49 369.7 27.3 248 140-407 104-364 (364)
2 1ug3_A EIF4GI, eukaryotic prot 100.0 3.2E-41 1.1E-45 338.5 19.1 320 28-386 8-337 (339)
3 1paq_A Translation initiation 100.0 2E-37 7E-42 287.4 16.7 167 250-416 20-189 (189)
4 3jui_A Translation initiation 100.0 5.2E-37 1.8E-41 283.1 17.7 166 250-415 12-182 (182)
5 3d3m_A Eukaryotic translation 100.0 6.6E-31 2.3E-35 239.3 16.7 153 255-407 3-168 (168)
6 2ful_A EIF-5, eukaryotic trans 99.9 4.5E-28 1.5E-32 222.3 8.6 118 288-418 49-171 (177)
7 2iu1_A EIF5, eukaryotic transl 99.9 4E-24 1.4E-28 200.5 15.3 129 270-416 29-163 (208)
8 1h2v_C 80 kDa nuclear CAP bind 98.3 0.00018 6E-09 79.1 26.4 297 28-383 293-606 (771)
9 2zu6_B Programmed cell death p 87.9 21 0.0007 34.7 21.7 271 30-377 2-282 (307)
10 2rg8_A Programmed cell death p 85.8 1.1 3.8E-05 39.8 5.7 156 25-209 4-164 (165)
11 3eiq_C Programmed cell death p 63.9 1.2E+02 0.004 30.0 21.9 271 24-376 47-332 (358)
12 3c5t_B Exendin-4, exenatide; l 41.7 12 0.0004 24.2 1.5 14 395-408 9-22 (31)
13 3ig3_A Plxna3 protein; plexin 38.6 68 0.0023 34.1 7.7 103 31-155 24-129 (627)
14 4b8b_A General negative regula 38.5 3.5E+02 0.012 28.6 13.0 53 251-303 446-498 (603)
15 2bwb_A Ubiquitin-like protein 37.4 21 0.0007 24.8 2.4 25 28-52 17-43 (46)
16 4adz_A CSOR; transcription, co 29.2 2.1E+02 0.0071 24.5 7.8 36 257-292 65-100 (136)
17 2rg8_A Programmed cell death p 28.5 2.9E+02 0.0098 23.9 12.4 128 250-390 7-137 (165)
18 2v75_A Nuclear polyadenylated 28.0 1.4E+02 0.0046 24.2 6.0 62 128-195 14-78 (104)
19 3clj_A Protein NRD1; CTD-inter 28.0 1.2E+02 0.0042 26.4 6.4 48 120-171 94-142 (157)
20 2jy5_A Ubiquilin-1; UBA, alter 27.4 36 0.0012 24.0 2.4 27 27-53 21-49 (52)
21 2knz_A Ubiquilin-4; cytoplasm, 26.5 38 0.0013 24.0 2.4 25 28-52 21-47 (53)
22 2g49_C Glucagon preproprotein; 26.3 30 0.001 21.9 1.5 12 395-406 17-28 (29)
23 2ion_A PDCD4, programmed cell 25.4 1.2E+02 0.004 26.1 5.8 60 107-169 65-127 (152)
24 1vej_A Riken cDNA 4931431F19; 24.4 52 0.0018 25.2 2.9 26 27-52 38-65 (74)
25 3d9j_A RNA-binding protein 16; 23.0 2.2E+02 0.0074 24.1 7.0 91 57-171 34-132 (145)
26 1jrj_A Exendin-4; Trp-CAGE, GL 22.9 37 0.0012 23.0 1.5 14 395-408 17-30 (39)
27 1wr1_B Ubiquitin-like protein 21.9 51 0.0018 24.0 2.4 25 28-52 27-53 (58)
28 2l63_A GLP-2, glucagon-like pe 21.8 41 0.0014 21.9 1.5 13 395-407 17-29 (33)
29 3iol_B Glucagon; receptor-liga 21.6 42 0.0014 21.4 1.6 12 395-406 17-28 (31)
No 1
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-45 Score=369.72 Aligned_cols=248 Identities=16% Similarity=0.287 Sum_probs=219.0
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccCCCchHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhhCC
Q 014705 140 ENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFP 219 (420)
Q Consensus 140 ~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G~al~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P 219 (420)
|.--..||.++|++++ +|.+|++.+... ++.|.+++|++++|+.+++++|.++++++|++||++ |++|||
T Consensus 104 P~a~~~la~f~ar~i~---~~~l~~~~l~~~-----l~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~~sgl~--l~~FlP 173 (364)
T 3l6a_A 104 PLVKSYLAQFAARAII---SELVSISELAQP-----LESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVN--MQKMLP 173 (364)
T ss_dssp TTHHHHHHHHHHHHHH---TTSSCHHHHHHH-----HGGGTTTTHHHHHHHHHHHHSCHHHHHHHHHHHTCC--SGGGSC
T ss_pred ccHHHHHHHHHHHHHH---cCCCCHHHHHHH-----hcccchHHHHHHHHHHHHHhcCHHHHHHHHHHcCCC--HHHhCC
Confidence 4457899999999999 999999999864 456999999999999999999999999999999998 999999
Q ss_pred CCCCChhHHHHHHHhcCCCccccchhhhhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHH
Q 014705 220 SSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDIL 299 (420)
Q Consensus 220 ~~kr~~e~f~~~f~~~~L~~l~~~~~~~~~~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~al 299 (420)
+++|+.++|.++|+++||++++++. +++++|.++++++.++++|+.||+++..++++++++||+++|+||
T Consensus 174 e~~~~~~~~~e~~~~~~L~~l~~~~----------~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v 243 (364)
T 3l6a_A 174 EIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSF 243 (364)
T ss_dssp GGGCSHHHHHHHHHHHTCGGGCHHH----------HHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhCCCcccCCHH----------HHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHH
Confidence 9999999999999999999998743 899999999999999999999999999999999999999999999
Q ss_pred HHHhh--hcc-c--------chhhhHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHhhchHHHhHHHHHHHHhh
Q 014705 300 MDAVQ--WSG-K--------NQQQNANAALRQVKTWAQLLNTFCTNA-KLELELMYKVQMQCYEDAKLMKLFPEIVRSLY 367 (420)
Q Consensus 300 m~~v~--~s~-k--------~~~~~~~~~~~~lk~~~pLL~~f~~~~-~~Ql~lL~ALQ~~c~e~~~~~k~f~~IL~~LY 367 (420)
|+++. ++. + +.........+.|++|+|+|++|+++. +.|+++|++||.+|++.......++.|++.||
T Consensus 244 ~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~~il~~LY 323 (364)
T 3l6a_A 244 LQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFY 323 (364)
T ss_dssp HHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99984 321 0 001112244578999999999999987 56999999999999974333456799999999
Q ss_pred hccccchhhHHHhhhcCCCc-chHHHHHHhHHHHHHHHccc
Q 014705 368 DQDVLAEDTILYWFRKGTNP-KGRQTFVKALEPFVKWLEEA 407 (420)
Q Consensus 368 d~DVlsEeaIl~W~~~~~~~-~Gk~~~lk~~~~FV~WLeEA 407 (420)
|.|||+||+|++||++.++. .|+++++++++|||+||+||
T Consensus 324 d~DileEe~il~W~~~~~~~~~~k~~~~~~~~~Fi~WL~eA 364 (364)
T 3l6a_A 324 DMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA 364 (364)
T ss_dssp HTTSSCHHHHHHHHHCCCCSSTTHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhcC
Confidence 99999999999999987653 48999999999999999997
No 2
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=100.00 E-value=3.2e-41 Score=338.48 Aligned_cols=320 Identities=13% Similarity=0.168 Sum_probs=244.4
Q ss_pred hhhHHHHHHHhhc--CCCCHHHHHHHh-hcCCccchhhhhhhHHhhhhcCCCCCCCcCcCCCCCCCceeeccCcchhhhh
Q 014705 28 AAFSDAVVQIYLD--NAGDLELIAKCI-ESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAIL 104 (420)
Q Consensus 28 ~~frd~~~~~~~~--~~~dle~~~~~l-~g~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~~~ 104 (420)
+.|...+-..+.+ ..||++.+...+ +=+...| +.+....++... .+ ++ + ..-.
T Consensus 8 ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~~---------le---~~-------~---~~re 63 (339)
T 1ug3_A 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVEST---------LE---RS-------A---IARE 63 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHH---------TT---TC-------H---HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHHH---------hC---CC-------H---HHHH
Confidence 4455566666665 447999988888 2222222 333333332211 11 11 1 1233
Q ss_pred hHHHHHHHHHhhhhhhHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCc-cchhhhhhccccCCCc
Q 014705 105 PSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPE-TVFQPLLKDNLVGKGL 180 (420)
Q Consensus 105 ~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~-~~l~~l~~~~Lv~~G~ 180 (420)
.-..+|..|....-.=...++.-..+++..+.-. -|..+.+||.++|++++ +|.+|+ +++.++. ++|+++|.
T Consensus 64 ~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~---~g~l~~~~l~~~~~-~~l~~~g~ 139 (339)
T 1ug3_A 64 HMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQ---EGGVPMGELFREIT-KPLRPLGK 139 (339)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGS---TTSCCHHHHHHHHT-TTHHHHTC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHH---CCCCCHHHHHHHHH-Hhhhccch
Confidence 4455666666553333344444455555555544 47799999999999999 999999 5555544 89999999
Q ss_pred hHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhhCCCCCCChhHHHHHHHhcCCCccccchhhhhHH--HHHHHHHH
Q 014705 181 VLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFE--VKLKDMKS 258 (420)
Q Consensus 181 al~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P~~kr~~e~f~~~f~~~~L~~l~~~~~~~~~~--~~~~El~~ 258 (420)
+.+|++++|+.|++++|.+++.++|++|||+ |.+|||+++| +.++|+++||++++++..+++.. ....++++
T Consensus 140 ~~~fl~~vl~~l~~~~g~~~l~~~~~~s~l~--l~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~ 213 (339)
T 1ug3_A 140 AASLLLEILGLLCKSMGPKKVGTLWREAGLS--WKEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNR 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTCC--GGGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHcCCC--HHHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHH
Confidence 9999999999999999999999999999999 9999999985 78899999999999998766655 67889999
Q ss_pred HHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHH-hhhcccchhhhHHHHHHHHHHHHHHHHHHhcChHH
Q 014705 259 TLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDA-VQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKL 337 (420)
Q Consensus 259 ~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~-v~~s~k~~~~~~~~~~~~lk~~~pLL~~f~~~~~~ 337 (420)
+|.++++++.++++|+.|||+++.++++++++|++++|+|+|++ +.|++. . ....+++++|+|+|++|+++.+.
T Consensus 214 ~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~---~--~~~~~~l~~~~pll~~~~~~~~~ 288 (339)
T 1ug3_A 214 QLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETP---L--RVDVAVLKARAKLLQKYLCDEQK 288 (339)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHTEECSSS---C--EECHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHHHHhcCCc---h--HHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999998 445321 1 12347899999999999998999
Q ss_pred HHHHHHHHHHHHhhchHHHhHHHHHHHHhhhccccchhhHHHhhhcCCC
Q 014705 338 ELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTN 386 (420)
Q Consensus 338 Ql~lL~ALQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIl~W~~~~~~ 386 (420)
|+++|+|||.||+++.+++++|..|++.|||.|||+||+|++||++.++
T Consensus 289 ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~~d~ 337 (339)
T 1ug3_A 289 ELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSKDP 337 (339)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHhCcchhhHHHHHHHHhcCCC
Confidence 9999999999999877778899999999999999999999999988654
No 3
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=100.00 E-value=2e-37 Score=287.42 Aligned_cols=167 Identities=17% Similarity=0.250 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHh-hhcccchhhhHHHHHHHHHHHHHHH
Q 014705 250 EVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAV-QWSGKNQQQNANAALRQVKTWAQLL 328 (420)
Q Consensus 250 ~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v-~~s~k~~~~~~~~~~~~lk~~~pLL 328 (420)
..|++|++++|.+++++|+++++++.|||++++++|+++++|++++|+|+|+.+ .|+++....+.+.+.++|++|+|+|
T Consensus 20 ~~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll 99 (189)
T 1paq_A 20 EDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLF 99 (189)
T ss_dssp -CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999999999998 5654433335668889999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHh--hchHHHhHHHHHHHHhhhccccchhhHHHhhhcCCCcchHHHHHHhHHHHHHHHcc
Q 014705 329 NTFCTNAKLELELMYKVQMQCY--EDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEE 406 (420)
Q Consensus 329 ~~f~~~~~~Ql~lL~ALQ~~c~--e~~~~~k~f~~IL~~LYd~DVlsEeaIl~W~~~~~~~~Gk~~~lk~~~~FV~WLeE 406 (420)
.+|+++.+.|+++|++||.||+ ++|++++.|+.||+.|||.|||+||+|++||++++......+++++++|||+||+|
T Consensus 100 ~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~~~~~~v~~~~~~Fi~WL~e 179 (189)
T 1paq_A 100 KRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEWLQN 179 (189)
T ss_dssp GGTCCSHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999 78999999999999999999999999999999876533223889999999999999
Q ss_pred cccCccCCCC
Q 014705 407 AEEEDYQLHK 416 (420)
Q Consensus 407 AEEEsdeee~ 416 (420)
||||||+|||
T Consensus 180 AEeEs~~eee 189 (189)
T 1paq_A 180 ADEESSSEEE 189 (189)
T ss_dssp TC--------
T ss_pred cCccccccCC
Confidence 9999888765
No 4
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=100.00 E-value=5.2e-37 Score=283.11 Aligned_cols=166 Identities=20% Similarity=0.354 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHhhh--ccc-chhhhHHHHHHHHHHHHH
Q 014705 250 EVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQW--SGK-NQQQNANAALRQVKTWAQ 326 (420)
Q Consensus 250 ~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v~~--s~k-~~~~~~~~~~~~lk~~~p 326 (420)
..|.+|++.+|.+++++|++++++++|||++++++|+|+++|++++|+|+|+.+.. ++. ......+++.+.|++|+|
T Consensus 12 ~~F~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ 91 (182)
T 3jui_A 12 KVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSP 91 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999743 221 123445578889999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhhchHHHhHHHHHHHHhhhccccchhhHHHhhhcCCCcc-hHH-HHHHhHHHHHHHH
Q 014705 327 LLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPK-GRQ-TFVKALEPFVKWL 404 (420)
Q Consensus 327 LL~~f~~~~~~Ql~lL~ALQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIl~W~~~~~~~~-Gk~-~~lk~~~~FV~WL 404 (420)
+|.+|+++.+.|+++|++||.||++++.+++.|+.||+.|||.|||+||+|++||+++++.. |++ .++++++|||+||
T Consensus 92 ll~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~vr~~~~~Fi~WL 171 (182)
T 3jui_A 92 VFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWL 171 (182)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987653 654 5789999999999
Q ss_pred cccccCccCCC
Q 014705 405 EEAEEEDYQLH 415 (420)
Q Consensus 405 eEAEEEsdeee 415 (420)
+||||||||||
T Consensus 172 ~eAEEEs~ee~ 182 (182)
T 3jui_A 172 KEAEEESSEDD 182 (182)
T ss_dssp HHHHC------
T ss_pred hccCcccCCCC
Confidence 99999988765
No 5
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.97 E-value=6.6e-31 Score=239.34 Aligned_cols=153 Identities=16% Similarity=0.351 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHhhhc--c-cch--h--h----hHHHHHHHHHH
Q 014705 255 DMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWS--G-KNQ--Q--Q----NANAALRQVKT 323 (420)
Q Consensus 255 El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v~~s--~-k~~--~--~----~~~~~~~~lk~ 323 (420)
++++.|.++++++++++.|+.||+++....++++++|++++|+|+|+++.+. + ++. . . ..+.+.+++++
T Consensus 3 ~~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~ 82 (168)
T 3d3m_A 3 KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS 82 (168)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999763 2 211 0 1 23577889999
Q ss_pred HHHHHHHHhcC-hHHHHHHHHHHHHHHhhchHHHhHHHHHHHHhhhccccchhhHHHhhhcCCC-cchHHHHHHhHHHHH
Q 014705 324 WAQLLNTFCTN-AKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTN-PKGRQTFVKALEPFV 401 (420)
Q Consensus 324 ~~pLL~~f~~~-~~~Ql~lL~ALQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIl~W~~~~~~-~~Gk~~~lk~~~~FV 401 (420)
|+|+|.+|+++ .+.|+++|++||.||++++.+++.|+.||+.|||.|||+||+|++||+++++ ..|+++++++++|||
T Consensus 83 ~~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~~~~~~~~~~~~~~Fi 162 (168)
T 3d3m_A 83 FKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWL 162 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 99999999986 7999999999999999988889999999999999999999999999998764 468899999999999
Q ss_pred HHHccc
Q 014705 402 KWLEEA 407 (420)
Q Consensus 402 ~WLeEA 407 (420)
+||+||
T Consensus 163 ~WL~eA 168 (168)
T 3d3m_A 163 TWLETA 168 (168)
T ss_dssp HHHHCC
T ss_pred HHHhcC
Confidence 999997
No 6
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.5e-28 Score=222.28 Aligned_cols=118 Identities=22% Similarity=0.395 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHh-hchHHHhHHHHHHHHh
Q 014705 288 DIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCY-EDAKLMKLFPEIVRSL 366 (420)
Q Consensus 288 ~~evi~~v~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~~f~~~~~~Ql~lL~ALQ~~c~-e~~~~~k~f~~IL~~L 366 (420)
.++++.++|.|+|+. .+.++|++|+|+|.+|+++.+.|+++|++||.||. +++++++.|+.||+.|
T Consensus 49 ~~~~~~vl~~~lf~~-------------~i~~~l~k~~~lL~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~L 115 (177)
T 2ful_A 49 DPKIGCVLAQCLFDE-------------DIVNEIAEHNAFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQL 115 (177)
T ss_dssp CTTHHHHHHHHSCST-------------THHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHH
T ss_pred hhHHHHHHHHHHhch-------------hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 378999999999952 34578999999999999989999999999999995 7899999999999999
Q ss_pred hhccccchhhHHHhhhcCCC----cchHHHHHHhHHHHHHHHcccccCccCCCCCC
Q 014705 367 YDQDVLAEDTILYWFRKGTN----PKGRQTFVKALEPFVKWLEEAEEEDYQLHKFP 418 (420)
Q Consensus 367 Yd~DVlsEeaIl~W~~~~~~----~~Gk~~~lk~~~~FV~WLeEAEEEsdeee~~~ 418 (420)
||.|||+||+|++||+++++ .+|+++++++++|||+||+|||||||+|||..
T Consensus 116 Yd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEEseeeeee~ 171 (177)
T 2ful_A 116 YNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDDDEEDDEL 171 (177)
T ss_dssp HHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC---------C
T ss_pred hccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHccccccccccccc
Confidence 99999999999999998763 34678899999999999999999877665543
No 7
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=99.91 E-value=4e-24 Score=200.49 Aligned_cols=129 Identities=26% Similarity=0.442 Sum_probs=102.6
Q ss_pred HHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHH
Q 014705 270 MSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCT-NAKLELELMYKVQMQ 348 (420)
Q Consensus 270 ~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~~f~~-~~~~Ql~lL~ALQ~~ 348 (420)
.++|+.+.+.+.. .+....+++.++|+. .+.++|++|+|+|.+|++ +.+.|+++|++||.|
T Consensus 29 ~~~i~~ea~~l~~-----k~~~~~vl~e~lf~~-------------~i~~~l~k~~~lL~~~~~~~~~~Q~~lL~alE~~ 90 (208)
T 2iu1_A 29 DKEIVAEAERLDV-----KAMGPLVLTEVLFNE-------------KIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECV 90 (208)
T ss_dssp HHHHHHHHHHTTC-----GGGHHHHHHHHHCST-------------THHHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcch-----HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3477777765433 235555666666632 346789999999999998 569999999999999
Q ss_pred Hhh-chHHHhHHHHHHHHhhhccccchhhHHHhhhcCCCcc-h---HHHHHHhHHHHHHHHcccccCccCCCC
Q 014705 349 CYE-DAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPK-G---RQTFVKALEPFVKWLEEAEEEDYQLHK 416 (420)
Q Consensus 349 c~e-~~~~~k~f~~IL~~LYd~DVlsEeaIl~W~~~~~~~~-G---k~~~lk~~~~FV~WLeEAEEEsdeee~ 416 (420)
|.. +|++++.|+.||+.|||.|||+||+|++||+++++.+ + ...++++++|||+||+|||||||++||
T Consensus 91 ~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~~~e~~k~v~~~~~pFI~WL~EAEEEs~eeee 163 (208)
T 2iu1_A 91 VAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEE 163 (208)
T ss_dssp HHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHCSSCCCCCCCC
T ss_pred HHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 764 6889999999999999999999999999999877542 1 125799999999999999999875443
No 8
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=98.30 E-value=0.00018 Score=79.15 Aligned_cols=297 Identities=8% Similarity=0.098 Sum_probs=204.6
Q ss_pred hhhHHHHHHHhhcCCCCHHHHHHHhhcCC--ccchhhhhhhHHhhhhcCCCCCCCcCcCCCCCCCceeecc----Ccchh
Q 014705 28 AAFSDAVVQIYLDNAGDLELIAKCIESSD--LNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDC----EPQRE 101 (420)
Q Consensus 28 ~~frd~~~~~~~~~~~dle~~~~~l~g~~--ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~i~~~----~~~~~ 101 (420)
..|||.++.+++--.+|-+..|+.|-+=. -.+ ++.+.+.| |||.. |.+.-
T Consensus 293 ~l~re~ildIi~~~~~nrkecA~~Ll~l~~~~~~-~~e~~iVE-----------------------~i~~el~~LP~p~~ 348 (771)
T 1h2v_C 293 FVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKI-PLNYHIVE-----------------------VIFAELFQLPAPPH 348 (771)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSSCC-CHHHHHHH-----------------------HHHHHHTCSSCCSS
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcc-cHHHHHHH-----------------------HHHHHHhcCCCCch
Confidence 46899999999988788899999993310 000 11222222 33332 33333
Q ss_pred hhhhHHHHHHHHHhhh-hhhHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHhhhcCCC--CCccchhhhhhccccCC
Q 014705 102 AILPSVIYIQKILRRR-PFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGL--PPETVFQPLLKDNLVGK 178 (420)
Q Consensus 102 ~~~~~~~~~~kl~rr~-kyl~k~~e~~~~~~l~~l~~f~~~~r~klA~~~a~~~~~~~~g~--~~~~~l~~l~~~~Lv~~ 178 (420)
...-|-.|+++|-+.- +=+...|+..+..+-.-|+..+.+-+.++|-..|..+| |-. .|=+....-+. +-..
T Consensus 349 ~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFShhLS---NF~f~W~W~eW~~~~e--~~~~ 423 (771)
T 1h2v_C 349 IDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLS---NFQFRWSWEDWSDCLS--QDPE 423 (771)
T ss_dssp CHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHHHHHT---TTTTCCCGGGGGGGTT--SCTT
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHh---cCCcCccHHHhHHhhc--CCcc
Confidence 4468888999999988 45677899999999999999999999999999999999 883 45554433211 1123
Q ss_pred CchHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhhCCCCCCChhHHHHHHHhcCCCccccchhhhhHHHHHHHHHH
Q 014705 179 GLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKS 258 (420)
Q Consensus 179 G~al~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P~~kr~~e~f~~~f~~~~L~~l~~~~~~~~~~~~~~El~~ 258 (420)
.-.-.|+..+|+..++....+.+... |-+-+..++|+.. .+ +| .|............+.+
T Consensus 424 ~p~r~Fik~ll~k~~RLSy~~rIk~~-----lP~~~~~llp~~p-~p-~f-------------~y~~e~~~~~p~~~~a~ 483 (771)
T 1h2v_C 424 SPKPKFVREVLEKCMRLSYHQRILDI-----VPPTFSALCPSNP-TC-IY-------------KYGDESSNSLPGHSVAL 483 (771)
T ss_dssp SHHHHHHHHHHHHHHHTSCHHHHHTT-----SCGGGGGGSCCCC-CC-CC-------------TTSTTSCTTSTTHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHh-----CcHHHHhhCCCCC-CC-Cc-------------eeCCccccCCcchHHHH
Confidence 33456999999999988777766543 3333777888742 22 12 12111000011234567
Q ss_pred HHHHHHHhcCcHHHHHHHHHhHhhhcCCC--------hHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 014705 259 TLTTQIAEETEMSEVIESVKQRVKDAKLP--------DIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNT 330 (420)
Q Consensus 259 ~L~~~l~e~~~~~~ii~eIk~~~~~~n~s--------~~evi~~v~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~~ 330 (420)
.|...+.+..++++|..+|++......-. ++-.+.+++++++.... |+ ..-....|++|.++|..
T Consensus 484 ~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~Gs---kS----~SH~~~~lery~~~lk~ 556 (771)
T 1h2v_C 484 CLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAA---KS----FSHSFSALAKFHEVFKT 556 (771)
T ss_dssp HHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHST---TC----HHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhcc---ch----HHHHHHHHHHHHHHHHH
Confidence 88888999999999999999844332211 12467777788877642 21 12445689999999999
Q ss_pred HhcChHHHHHHHHHHHHHHhhchHHHhHHHHHHHHhhhccccchhhHHHhhhc
Q 014705 331 FCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRK 383 (420)
Q Consensus 331 f~~~~~~Ql~lL~ALQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIl~W~~~ 383 (420)
++.+++.|..+|.++-.|...+|.. ...++..|-+.+||+-.+|..|-=+
T Consensus 557 l~~~~~~q~~il~~v~~~W~~~~q~---~~ividkll~~~iv~p~~Vv~w~f~ 606 (771)
T 1h2v_C 557 LAESDEGKLHVLRVMFEVWRNHPQM---IAVLVDKMIRTQIVDCAAVANWIFS 606 (771)
T ss_dssp HTSSHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCce---EehHHHHHHhcCCCCHHHHHHHHcC
Confidence 9998899999999999999998875 4667788999999999999999843
No 9
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=87.90 E-value=21 Score=34.67 Aligned_cols=271 Identities=12% Similarity=0.129 Sum_probs=138.1
Q ss_pred hHHHHHHHhhc--CCCCHHHHHHHhhcCCccchhhhhhhHHhhhhcCCCCCCCcCcCCCCCCCceeeccCcchhhhhhHH
Q 014705 30 FSDAVVQIYLD--NAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSV 107 (420)
Q Consensus 30 frd~~~~~~~~--~~~dle~~~~~l~g~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 107 (420)
|...+..++++ ..||.+.++..|.. |....|...|-..+|.=++ | +.+ ..+| .-.
T Consensus 2 ~~k~~~~ii~EYf~~~d~~Ea~~~l~e--l~~p~~~~~~v~~~i~~al---------d--r~~-------~erE---~~s 58 (307)
T 2zu6_B 2 FEKTLTPIIQEYFEHGDTNEVAEMLRD--LNLGEMKSGVPVLAVSLAL---------E--GKA-------SHRE---MTS 58 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHT--TCCGGGGGGHHHHHHHHHH---------T--SCH-------HHHH---HHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHH--hCCcchHHHHHHHHHHHHh---------C--CCH-------HHHH---HHH
Confidence 33344444444 33699999998832 4445566667666654221 1 111 1222 112
Q ss_pred HHHHHHHhhhhhhHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccCCCchHHH
Q 014705 108 IYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSF 184 (420)
Q Consensus 108 ~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G~al~f 184 (420)
.++.-|- ..-.=...++.-+.++|.++.-. .|.--+.||.++|+++. +|.+|++.+........-..|. -
T Consensus 59 ~LLs~L~-~~~ls~~~i~~gf~~ll~~ldDl~lD~P~a~~~la~flaraV~---d~~l~~~~l~~~~~~~~~~~g~---~ 131 (307)
T 2zu6_B 59 KLLSDLC-GTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG---DGILCNTYIDSYKGTVDCVQAR---A 131 (307)
T ss_dssp HHHHHHH-HHTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---TTSSCTTTTGGGTTTCCCHHHH---H
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHHhhhHhcccccchHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccchHHH---H
Confidence 2334442 11111223333455666666554 46678999999999999 9999999999866543222222 1
Q ss_pred HHHHHHHHHHhC-ChhHHHHHHHhCCCchhhhhhCCCCCCChhHHHHHHHhcCCCccccchhhhhHHHHHHHHHHHHHHH
Q 014705 185 ITDFFKEYLVDN-SLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQ 263 (420)
Q Consensus 185 l~~i~~~~~~~~-~~~~l~~~lrksgl~~~l~~f~P~~kr~~e~f~~~f~~~~L~~l~~~~~~~~~~~~~~El~~~L~~~ 263 (420)
.+..-+++++.+ |. .++++.|-. |...++ .+.+.+.+...|.+.
T Consensus 132 ~l~~a~~~l~~~~~~---------~~~~~~WG~--~~~~~~------------------------~eelkkki~~lL~EY 176 (307)
T 2zu6_B 132 ALDKATVLLSMSKGG---------KRKDSVWGS--GGGQQS------------------------VNHLVKEIDMLLKEY 176 (307)
T ss_dssp HHHHHHHHHHTCC-------------CCCSSCC--CSTTSC------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccH---------hHHhhhcCC--CCCCCC------------------------HHHHHHHHHHHHHHH
Confidence 111112222211 00 112211210 111112 233444566666666
Q ss_pred HHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHH-HHHhcChHHH---H
Q 014705 264 IAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLL-NTFCTNAKLE---L 339 (420)
Q Consensus 264 l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL-~~f~~~~~~Q---l 339 (420)
+.. .+.+++..-|+++..+. -.+++++.++...|+.. .+...+.+.+.+.. +. ...++..+.. .
T Consensus 177 ~~~-~D~~EA~~ci~EL~~p~--f~~e~V~~ai~~alE~~------~~~~re~~~~LL~~---L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 177 LLS-GDISEAEHCLKELEVPH--FHHELVYEAIIMVLEST------GESTFKMILDLLKS---LWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHH-CCHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHTCC------SSHHHHHHHHHHHH---HHHHCSSCHHHHHHHHH
T ss_pred HcC-CCHHHHHHHHHHcCCCc--chHHHHHHHHHHHHccC------ChHHHHHHHHHHHH---HHHCCCCCHHHHHHHHH
Confidence 654 57788888888886552 24566665555444431 01111122222221 11 1222212111 1
Q ss_pred HHHHHHHHHHhhchHHHhHHHHHHHHhhhccccchhhH
Q 014705 340 ELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTI 377 (420)
Q Consensus 340 ~lL~ALQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaI 377 (420)
.++..+.....+-|+.-.++..++......++|+..-+
T Consensus 245 ~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~ 282 (307)
T 2zu6_B 245 RIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLR 282 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHH
Confidence 34445555555668888889999999999999997543
No 10
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=85.84 E-value=1.1 Score=39.77 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=85.1
Q ss_pred CCchhhHHHHHHHhhc--CCCCHHHHHHHhhcCCccchhhhhhhHHhhhhcCCCCCCCcCcCCCCCCCceeeccCcchhh
Q 014705 25 LDPAAFSDAVVQIYLD--NAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREA 102 (420)
Q Consensus 25 ~dp~~frd~~~~~~~~--~~~dle~~~~~l~g~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~ 102 (420)
..+..|+..+...+++ ..+|.+.+...+.- |....|.-.+-..+|.= .-| +.+ ..+|
T Consensus 4 ~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~e--L~~p~~~~~~V~~~I~~---------ald--rk~-------~ere- 62 (165)
T 2rg8_A 4 LDERAFEKTLTPIIQEYFEHGDTNEVAEMLRD--LNLGEMKSGVPVLAVSL---------ALE--GKA-------SHRE- 62 (165)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HTCSGGGGHHHHHHHHH---------HHT--SCH-------HHHH-
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--hCCcccHHHHHHHHHHH---------HHc--CCH-------HHHH-
Confidence 3566788877777777 44799999998821 22234555565555531 111 111 1122
Q ss_pred hhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccCCC
Q 014705 103 ILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKG 179 (420)
Q Consensus 103 ~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G 179 (420)
.-..++..| ..--.=...+++-+..+|.++.-. .|.--+.||.++|+++. +|.+|++.+...........|
T Consensus 63 --~~s~LL~~L-~~~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~---d~~l~~~~l~~~~~~~~~~~~ 136 (165)
T 2rg8_A 63 --MTSKLLSDL-CGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG---DGILCNTYIDSYKGTVDCVQA 136 (165)
T ss_dssp --HHHHHHHHH-BTTTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---TTSSCTTHHHHTTTTCCCHHH
T ss_pred --HHHHHHHHH-HHCCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHH---cCCCCHHHHHHHHhccCchHH
Confidence 223455555 332222333444455555555554 45567999999999999 999999999987766544555
Q ss_pred chHHHHHHHHHHHHHhCChhHHHHHHHhCC
Q 014705 180 LVLSFITDFFKEYLVDNSLDDLIAILKRGK 209 (420)
Q Consensus 180 ~al~fl~~i~~~~~~~~~~~~l~~~lrksg 209 (420)
...-+..+ ..++...|..++..+|.-+|
T Consensus 137 ~~~l~~a~--~ll~~~~~~~~~~~~Wg~g~ 164 (165)
T 2rg8_A 137 RAALDKAT--VLLSMSKGGKRKDSVWGSGG 164 (165)
T ss_dssp HHHHHHHH--HHHHTC--------------
T ss_pred HHHHHHHH--HHHhccccHHHHHhhcCCCC
Confidence 54444444 45577889999999997654
No 11
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.90 E-value=1.2e+02 Score=30.00 Aligned_cols=271 Identities=14% Similarity=0.212 Sum_probs=132.9
Q ss_pred CCCchhhHHHHHHHhhc--CCCCHHHHHHHhhcCCccchhhhhhhHHhhhhcCCCCCCCcCcCCCCCCCceeeccCcchh
Q 014705 24 PLDPAAFSDAVVQIYLD--NAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQRE 101 (420)
Q Consensus 24 ~~dp~~frd~~~~~~~~--~~~dle~~~~~l~g~~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~i~~~~~~~~ 101 (420)
..++..|...+..++.+ ..+|.+.++..|.. |+...|.-.+-..+|.=.+ | |++ ..+|
T Consensus 47 ~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~e--L~~p~~~~~~v~~~I~~aL---------d--r~~-------~erE 106 (358)
T 3eiq_C 47 PLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRD--LNLGEMKSGVPVLAVSLAL---------E--GKA-------SHRE 106 (358)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHT--TTCCGGGGGHHHHHHHHHT---------T--SCH-------HHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--hCCchhHHHHHHHHHHHHh---------c--CCh-------HHHH
Confidence 44556787777777666 34788888888832 3333444455555544222 1 111 0111
Q ss_pred hhhhHHHHHHHHHhhhhhh-HHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccC
Q 014705 102 AILPSVIYIQKILRRRPFL-IKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVG 177 (420)
Q Consensus 102 ~~~~~~~~~~kl~rr~kyl-~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~ 177 (420)
- -.+++..|. . +.+ ...++.-..++|.++.-. .|.--..||.|+|+++. +|.+|++.|.... .++
T Consensus 107 ~---~s~LLs~L~-~-~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~---d~~l~~~~l~~~~-~~~-- 175 (358)
T 3eiq_C 107 M---TSKLLSDLC-G-TVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG---DGILCNTYIDSYK-GTV-- 175 (358)
T ss_dssp H---HHHHHHTTT-T-TSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHH---TTCSCSSTTGGGC------
T ss_pred H---HHHHHHHHH-h-CCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHH---hCCCCHHHHHHHh-hcc--
Confidence 0 011222221 1 111 111222233344444443 46677899999999999 9999999998742 221
Q ss_pred CCchHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhhCCCCCCChhHHHHHHH-hcCCCccccchhhhhHHHHHHHH
Q 014705 178 KGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFT-KEGLIPLVEYNEKKIFEVKLKDM 256 (420)
Q Consensus 178 ~G~al~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P~~kr~~e~f~~~f~-~~~L~~l~~~~~~~~~~~~~~El 256 (420)
++.. .. ++++++.. ++.. +...+++....- ..|+ +.-+...+.+
T Consensus 176 ~~~~---~~----------------~~l~~a~~---~L~~----~~~~~~~~~~WG~g~~~---------~~veelkkki 220 (358)
T 3eiq_C 176 DCVQ---AR----------------AALDKATV---LLSM----SKGGKRKDSVWGSGGGQ---------QPVNHLVKEI 220 (358)
T ss_dssp CCHH---HH----------------HHHHHHHH---HHTC-------------CCCCCCSS---------SCHHHHHHHH
T ss_pred cchH---HH----------------HHHHHHHH---HHhc----cchHHHHHHhcCCCCCC---------ccHHHHHHHH
Confidence 1111 11 22222220 1110 011111111000 0111 1223344566
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCh-
Q 014705 257 KSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNA- 335 (420)
Q Consensus 257 ~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~~f~~~~- 335 (420)
...|.+.+.. .+.+++..-|+++..+. -.+++++.++...|+.. .+... .....||...+...
T Consensus 221 ~~lL~EY~~s-~D~~EA~~ci~EL~~p~--fhhe~V~~av~~aLE~~------~~~~r-------e~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 221 DMLLKEYLLS-GDISEAEHCLKELEVPH--FHHELVYEAIVMVLEST------GESAF-------KMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHH-CCHHHHHHHHHHHCCTT--CHHHHHHHHHHHHHHCC------SSHHH-------HHHHHHHHHHHHTTC
T ss_pred HHHHHHhccC-CCHHHHHHHHHHccCCc--chHHHHHHHHHHHHccC------chHHH-------HHHHHHHHHHHHCCC
Confidence 6667777765 47888888888886542 34677776665555531 01011 11223444333321
Q ss_pred --HHH-----HHHHHHHHHHHhhchHHHhHHHHHHHHhhhccccchhh
Q 014705 336 --KLE-----LELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDT 376 (420)
Q Consensus 336 --~~Q-----l~lL~ALQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEea 376 (420)
..| ..++..+.....+-|+.-.++..++......++|+-.-
T Consensus 285 ls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f 332 (358)
T 3eiq_C 285 ITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQL 332 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHH
T ss_pred CCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHH
Confidence 111 12344445555556888888999999999999999744
No 12
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=41.65 E-value=12 Score=24.17 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=10.9
Q ss_pred HhHHHHHHHHcccc
Q 014705 395 KALEPFVKWLEEAE 408 (420)
Q Consensus 395 k~~~~FV~WLeEAE 408 (420)
++++.||.||.+.-
T Consensus 9 ~aakdFv~WL~ngk 22 (31)
T 3c5t_B 9 EAVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCC
Confidence 46788999998653
No 13
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=38.64 E-value=68 Score=34.10 Aligned_cols=103 Identities=16% Similarity=0.319 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHhhcC---CccchhhhhhhHHhhhhcCCCCCCCcCcCCCCCCCceeeccCcchhhhhhHH
Q 014705 31 SDAVVQIYLDNAGDLELIAKCIESS---DLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSV 107 (420)
Q Consensus 31 rd~~~~~~~~~~~dle~~~~~l~g~---~ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 107 (420)
|+..=+++.+--.|...+.+-|.|+ -|||+.|+.-.| | ||.. .+|. +.....+..+..=.
T Consensus 24 r~ecK~aFaELqt~m~dlt~dl~~~giPfLdyk~y~~rv~---F------P~~~------~hp~--l~~~~~~~~~e~~l 86 (627)
T 3ig3_A 24 ALECKEAFAELQTDINELTNHMDGVQIPFLDYRTYAVRVL---F------PGIE------AHPV--LKELDTPPNVEKAL 86 (627)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC---CCCCBCCHHHHHHHHH---S------TTCT------TCGG--GSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHccchhhhhhccccCCCCCcChHHHHHhhc---C------CCCC------CCcc--ccccccCCCHHHHH
Confidence 3333344433222334444455333 489999998654 4 4431 1221 11111122344555
Q ss_pred HHHHHHHhhhhhhHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHh
Q 014705 108 IYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFS 155 (420)
Q Consensus 108 ~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f~~~~r~klA~~~a~~~~ 155 (420)
.-|.+||....||..-+ +.|-.=+.|+..+|-.+|-++-.++.
T Consensus 87 ~~f~~LL~nk~FLl~fI-----~tLE~q~~Fs~rDr~~vASLL~vaL~ 129 (627)
T 3ig3_A 87 RLFGQLLHSRAFLLTFI-----HTLEAQSSFSMRDRGTVASLTMVALQ 129 (627)
T ss_dssp HHHHHHTTCHHHHHHHH-----HHHHTCTTCCHHHHHHHHHHHHHHTG
T ss_pred HHHHHHhcccHHHHHHH-----HHHhcCCCcchhcchhhHHHHHHHhc
Confidence 67888999988887533 34444479999999999988766655
No 14
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=38.46 E-value=3.5e+02 Score=28.63 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHh
Q 014705 251 VKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAV 303 (420)
Q Consensus 251 ~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v 303 (420)
..-+|+..-.++++..+.+.++++..++.++.+.+--++++..+++..+++-.
T Consensus 446 dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEy 498 (603)
T 4b8b_A 446 DIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAES 498 (603)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999999998887778899999999998865
No 15
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=37.39 E-value=21 Score=24.75 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.5
Q ss_pred hhh--HHHHHHHhhcCCCCHHHHHHHh
Q 014705 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (420)
Q Consensus 28 ~~f--rd~~~~~~~~~~~dle~~~~~l 52 (420)
-+| |++.++.|..+.||.+....+|
T Consensus 17 MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 17 MGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 356 6788899999999999888877
No 16
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=29.16 E-value=2.1e+02 Score=24.49 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHH
Q 014705 257 KSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVV 292 (420)
Q Consensus 257 ~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi 292 (420)
.+.+.++++++..+.+|+..|.+.+.+-+--...++
T Consensus 65 vrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~IL 100 (136)
T 4adz_A 65 IRGLQRMVDEDVYCIDILTQVSASTKALQSFALQLL 100 (136)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999988777553333333
No 17
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=28.50 E-value=2.9e+02 Score=23.86 Aligned_cols=128 Identities=9% Similarity=0.095 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHH
Q 014705 250 EVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLN 329 (420)
Q Consensus 250 ~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~v~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~ 329 (420)
+.+.+.+...|.+.+.. .+.++++.-++++..+. -.+.|+..+++..|+.-. ...+.+.+.+.. |..
T Consensus 7 ee~~kk~~~ii~EYf~~-~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~-------~ere~~s~LL~~---L~~ 73 (165)
T 2rg8_A 7 RAFEKTLTPIIQEYFEH-GDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKA-------SHREMTSKLLSD---LCG 73 (165)
T ss_dssp HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCH-------HHHHHHHHHHHH---HBT
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHH---HHH
Confidence 44555666666666654 57888888888876432 345666666665555421 111122222222 111
Q ss_pred HHhcChHH---HHHHHHHHHHHHhhchHHHhHHHHHHHHhhhccccchhhHHHhhhcCCCcchH
Q 014705 330 TFCTNAKL---ELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGR 390 (420)
Q Consensus 330 ~f~~~~~~---Ql~lL~ALQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIl~W~~~~~~~~Gk 390 (420)
+.++..+- =..+|..+.....+-|..-.++..++-...-.|++.-.-+-.=........|+
T Consensus 74 ~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~~~~~~~~ 137 (165)
T 2rg8_A 74 TVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQAR 137 (165)
T ss_dssp TTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTTCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhccCchHHH
Confidence 22222222 12455555666666688777888888999999999987666555553344454
No 18
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=28.02 E-value=1.4e+02 Score=24.23 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=42.5
Q ss_pred HHHHHHHhhccChhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccCCCchH---HHHHHHHHHHHHh
Q 014705 128 TRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVL---SFITDFFKEYLVD 195 (420)
Q Consensus 128 ~~~~l~~l~~f~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G~al---~fl~~i~~~~~~~ 195 (420)
+-+=|..|..|++. -+..|.++-++|+ ||.-|+++++.|. .|-.+=... +|+..+|..+-..
T Consensus 14 vaekL~~~~NF~ED-v~YVAEyIvlLis---Ng~s~~sivqELs--sLFd~v~~~a~~~vVqt~F~~l~~L 78 (104)
T 2v75_A 14 VAEKLAGIPNFNED-IKYVAEYIVLLIV---NGGTVESVVDELA--SLFDSVSRDTLANVVQTAFFALEAL 78 (104)
T ss_dssp HHHHHTTSTTCCSC-HHHHHHHHHHHHH---TTCCHHHHHHHHH--HHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccCcccc-HHHHHHHhheeee---CCCChHHHHHHHH--HHHccccHHHHHHHHHHHHHHHHHH
Confidence 44557788888864 6899999999999 9999999987654 232332222 4555555554433
No 19
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=28.01 E-value=1.2e+02 Score=26.45 Aligned_cols=48 Identities=13% Similarity=0.267 Sum_probs=36.9
Q ss_pred hHHHhHHHHHHHHHH-hhccChhhhHHHHHHHHHHHhhhcCCCCCccchhhhh
Q 014705 120 LIKNLENVTRRFMQS-LELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLL 171 (420)
Q Consensus 120 l~k~~e~~~~~~l~~-l~~f~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~ 171 (420)
+.+ +.+.++.++.- +..=++++|.|+-.++-+|=- ++.-|+.++.++.
T Consensus 94 v~~-~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k---~~~Fp~e~i~~i~ 142 (157)
T 3clj_A 94 INT-LGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDR---SGLFQKSYLNAIR 142 (157)
T ss_dssp HHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH---HTTTTTSCCTTTT
T ss_pred HHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---CCCCCHHHHHHHH
Confidence 444 56666666665 444478999999999999988 8999999998754
No 20
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=27.38 E-value=36 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=22.6
Q ss_pred chhh--HHHHHHHhhcCCCCHHHHHHHhh
Q 014705 27 PAAF--SDAVVQIYLDNAGDLELIAKCIE 53 (420)
Q Consensus 27 p~~f--rd~~~~~~~~~~~dle~~~~~l~ 53 (420)
--+| |++.++.|..++||+|....+|-
T Consensus 21 ~MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 21 AMGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HTTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3478 88889999999999999888883
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=26.46 E-value=38 Score=23.99 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=20.9
Q ss_pred hhh--HHHHHHHhhcCCCCHHHHHHHh
Q 014705 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (420)
Q Consensus 28 ~~f--rd~~~~~~~~~~~dle~~~~~l 52 (420)
-+| |++.++.|..++||++....+|
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 467 8888888888888999888887
No 22
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=26.33 E-value=30 Score=21.91 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.5
Q ss_pred HhHHHHHHHHcc
Q 014705 395 KALEPFVKWLEE 406 (420)
Q Consensus 395 k~~~~FV~WLeE 406 (420)
..++.||.||.+
T Consensus 17 ~aak~fv~wL~~ 28 (29)
T 2g49_C 17 RRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHhc
Confidence 457889999965
No 23
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.37 E-value=1.2e+02 Score=26.09 Aligned_cols=60 Identities=10% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCccchhh
Q 014705 107 VIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQP 169 (420)
Q Consensus 107 ~~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~ 169 (420)
..+|..|...--.=...++.-+.+++..|.-. .|.-...||.++|.++. +|.+|++.+..
T Consensus 65 ~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~---~g~l~~~~~~~ 127 (152)
T 2ion_A 65 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQ---AGIISKQLRDL 127 (152)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH---TTCSCHHHHHT
T ss_pred HHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHHHHHH---CCCCCHHHHHh
No 24
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.37 E-value=52 Score=25.21 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.4
Q ss_pred chhh--HHHHHHHhhcCCCCHHHHHHHh
Q 014705 27 PAAF--SDAVVQIYLDNAGDLELIAKCI 52 (420)
Q Consensus 27 p~~f--rd~~~~~~~~~~~dle~~~~~l 52 (420)
.-+| |+++++.|..+.||++....+|
T Consensus 38 eMGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 38 ALGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 3567 7899999999999999988888
No 25
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=22.96 E-value=2.2e+02 Score=24.09 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=58.9
Q ss_pred ccchhhhhhhHHhhhhcCCCCCCCcCcCCCCCCCceeeccCcchhhhhhHHHHHHHHHhhhhh--------hHHHhHHHH
Q 014705 57 LNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPF--------LIKNLENVT 128 (420)
Q Consensus 57 ldy~ry~~~lf~i~~~Gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kl~rr~ky--------l~k~~e~~~ 128 (420)
+++++|+..+-+++.. .|-.|+++ .=.+..=+++-++|..+. --..|...+
T Consensus 34 ~~~~~~~~~IV~~~~~-------------------~i~k~~~~--~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L 92 (145)
T 3d9j_A 34 IKAIKFYKHVVQSVEK-------------------FIQKCKPE--YKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNI 92 (145)
T ss_dssp HHTGGGHHHHHHHHHH-------------------HHHHSCGG--GHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------------HHHhCCcc--ceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHH
Confidence 3677777776666543 12223333 234444456666665553 234477777
Q ss_pred HHHHHHhhccChhhhHHHHHHHHHHHhhhcCCCCCccchhhhh
Q 014705 129 RRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLL 171 (420)
Q Consensus 129 ~~~l~~l~~f~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~ 171 (420)
.+++..+-.-.+..|.|+-.+...|-- .|.-|..++..+.
T Consensus 93 ~~~f~~~~~~~~~~r~kl~rLl~iW~~---r~vF~~~~l~~l~ 132 (145)
T 3d9j_A 93 ISTFQNLYRCPGDDKSKIVRVLNLWQK---NNVFKSEIIQPLL 132 (145)
T ss_dssp HHHHHHHTSSCGGGHHHHHHHHHHHHH---TTSSCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcC---CCCCCHHHHHHHH
Confidence 776654444468999999999999988 8888999998753
No 26
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=22.87 E-value=37 Score=23.00 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=10.8
Q ss_pred HhHHHHHHHHcccc
Q 014705 395 KALEPFVKWLEEAE 408 (420)
Q Consensus 395 k~~~~FV~WLeEAE 408 (420)
..++.||+||.+.-
T Consensus 17 ~aak~fv~wL~~~k 30 (39)
T 1jrj_A 17 EAVRLFIEWLKNGG 30 (39)
T ss_dssp HHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHcCC
Confidence 45788999998643
No 27
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.93 E-value=51 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.8
Q ss_pred hhh--HHHHHHHhhcCCCCHHHHHHHh
Q 014705 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (420)
Q Consensus 28 ~~f--rd~~~~~~~~~~~dle~~~~~l 52 (420)
-+| |++.++.|..+.||++....+|
T Consensus 27 MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 27 MGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 456 7788899999889999888887
No 28
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=21.79 E-value=41 Score=21.94 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.4
Q ss_pred HhHHHHHHHHccc
Q 014705 395 KALEPFVKWLEEA 407 (420)
Q Consensus 395 k~~~~FV~WLeEA 407 (420)
..++.||.||.+.
T Consensus 17 ~aak~fl~wL~~~ 29 (33)
T 2l63_A 17 LAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 4578899999764
No 29
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=21.65 E-value=42 Score=21.42 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.8
Q ss_pred HhHHHHHHHHcc
Q 014705 395 KALEPFVKWLEE 406 (420)
Q Consensus 395 k~~~~FV~WLeE 406 (420)
+.++.||.||..
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 568899999964
Done!