BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014706
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 200/314 (63%), Gaps = 13/314 (4%)
Query: 102 FEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIF--GAGGKRLRPALVFLVS-----RAT 154
F +VA++L L+ L+ +V AE P L SAAE F G GK+ R ++ L++ R
Sbjct: 11 FSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVP 70
Query: 155 AELVG------LKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRV 208
L+G EL + R +AEI EMIH ASL+HDDVLD++D RRG +++ + G ++
Sbjct: 71 EALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKM 130
Query: 209 AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKS 268
+VLAGDF+ +++ LA L+N EV+ L++ ++ +GE + +S ++ Y+ K+
Sbjct: 131 SVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTAARYSMDYYMQKT 190
Query: 269 YYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPA 328
YYKTASLI+ S K A+ +G ++ +EYGRNLGL+FQ++DDILDFT ++ LGK +
Sbjct: 191 YYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGS 250
Query: 329 ASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEK 388
SD+ G +TAP++FA+E+ P+LRE+++ + ++D A++ + S GI+ A+ELA E
Sbjct: 251 LSDIRHGVITAPILFAMEEFPQLREVVDQVAADPRNVDIALEYLGKSKGIQRARELAMEH 310
Query: 389 ANLAIHNLHCLPRS 402
ANLA + LP +
Sbjct: 311 ANLAAAAIGSLPET 324
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 201/314 (64%), Gaps = 13/314 (4%)
Query: 102 FEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIF--GAGGKRLRPALVFLVS-----RAT 154
F +VA++L L+ L+ +V AE P L SAAE F G GK+ R ++ L++ R
Sbjct: 11 FSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVP 70
Query: 155 AELVG------LKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRV 208
L+G EL + R +AEI EMIH ASL+HDDVLD++D RRG +++ + G ++
Sbjct: 71 EALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKM 130
Query: 209 AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKS 268
+VLAGDF+ +++ LA L+N EV+ L++ ++ +GE + +S + ++ Y+ K+
Sbjct: 131 SVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKT 190
Query: 269 YYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPA 328
YYKTASLI+ S K A+ +G ++ +EYGRNLGL+FQ++DDILDFT ++ LGK +
Sbjct: 191 YYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGS 250
Query: 329 ASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEK 388
SD+ G +TAP++FA+E+ P+LRE+++ + ++D A++ + S GI+ A+ELA E
Sbjct: 251 LSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEH 310
Query: 389 ANLAIHNLHCLPRS 402
ANLA + LP +
Sbjct: 311 ANLAAAAIGSLPET 324
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 180/339 (53%), Gaps = 14/339 (4%)
Query: 86 LNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIVGAEN-PVLMSAAEQIFGAGGKRLRP 144
++L +K+ P + + +AED+ +N ++ + +E+ P + + AGGKRLRP
Sbjct: 1 MSLDDKATKPHD--RLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRP 58
Query: 145 ALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 204
L A A LVG H LA +E IHTA+L+HDDV+DES RRG+ T + L+
Sbjct: 59 MLTL----AAARLVGYG--GPFHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLW 112
Query: 205 GTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEY 264
+ +VL GD++FA+S + + N+ V+++++ A GE+ Q ++ + + Y
Sbjct: 113 DNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIY 172
Query: 265 LIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 324
L KTA+L +A+T+ I G + +++YG LG++FQIVDD+LD+ + ++
Sbjct: 173 LRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEI 232
Query: 325 GKPAASDLAKGNLTAPVI--FALEKEPK---LREIIESEFCETGSLDEAIKLVKTSGGIE 379
GK D + LT PVI AL E + + +IE + G L+ A+ L+ G +E
Sbjct: 233 GKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLE 292
Query: 380 EAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418
+ A + A L LP P R L+D+ + +ER
Sbjct: 293 ATRLAAIGWTDTARKALAKLPDHPLRQMLDDLADYVVER 331
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 182/336 (54%), Gaps = 21/336 (6%)
Query: 93 RSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSR 152
R S+ + + D+ +N+ + + ++ ++ + AE + AGGKRLRP L++
Sbjct: 19 RKSGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRP----LMTV 74
Query: 153 ATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLA 212
A A L G ++LA +E IHTA+L+HDDV+D S +RRG+ H ++G +VL
Sbjct: 75 AAARLAGAD--NDHFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLV 132
Query: 213 GDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKT 272
GDF+FA++ + +++ ++++++ + A GE+ Q D +L YL KT
Sbjct: 133 GDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKT 192
Query: 273 ASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDL 332
A L AA+++ A+ +GVD + S+ + +YG NLGL+FQ+ DD LD+ + E LGK A D
Sbjct: 193 AELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDF 252
Query: 333 AKGNLTAPVIFALEKE-PKLREIIESEFCE---------TGSLDEAIKLVKTSGGIEEAQ 382
+G T P++ A+ + P+ E+EF E A +L+ SG ++
Sbjct: 253 REGKATLPLLLAIARSGPR-----EAEFWERAIGRREQTEADFRRARELIIGSGALDATL 307
Query: 383 ELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418
+LA + A+ A L P + +R ALE++ F + R
Sbjct: 308 DLAADYADKAKAALAMFPANDWREALEELADFAVSR 343
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 172/342 (50%), Gaps = 32/342 (9%)
Query: 101 IFEVVAEDLQTLNQNLKSIVGAENP-VLMSAAEQIFGAGGKRLRPALVFLVSRATAELVG 159
+F + E + +++ + ++ ++P VL AA AGGKR+RP +V + E VG
Sbjct: 7 LFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVL----TSTEAVG 62
Query: 160 LKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQ 219
L + +A IE+IH SL+HDD++D + RRG+ TVH+++G +A+LAGD +F++
Sbjct: 63 GDPLRAIYPAVA--IELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSK 120
Query: 220 SSWYLANLE-----NLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTAS 274
+ +A E V+++I + + G+ + + +EEY+ KT +
Sbjct: 121 AFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGA 180
Query: 275 LIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAK 334
L AS K I + K + +GRN+G++FQI DD+LD ++LGKP SD+ K
Sbjct: 181 LFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRK 240
Query: 335 GNLTAPVIFALEK------------------EPKLREIIESEFCETGSLDEAIKLVKTSG 376
G T V E + K R IIE + + EAI L+K G
Sbjct: 241 GKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDI--KSDVMEAIDLLKKYG 298
Query: 377 GIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418
I+ A E+AK+ A L LP+S R+ LE + F +ER
Sbjct: 299 SIDYAAEIAKDMIKKANEALRILPKSKARMDLELLAKFIVER 340
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 163/312 (52%), Gaps = 24/312 (7%)
Query: 112 LNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALV----FLVSRATAELVGLKELTTKH 167
+ + L + +++ + AA I +GGKR+RP V FL +L+
Sbjct: 17 VEKRLYECIQSDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLI--------- 67
Query: 168 RRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL 227
R A +E++H ASL+HDD +D SDMRRG +VH + A+ G F+ A++ +A +
Sbjct: 68 -RTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATI 126
Query: 228 ENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFS 287
N + ++ S+ I + GE Q + F+ + YL + KTA LI AS A+ S
Sbjct: 127 NNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSS 186
Query: 288 GVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL-- 345
+D + + ++G +G+S+QI+DDILD+T LGKP SD+ G++T P++ A+
Sbjct: 187 QLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIAN 246
Query: 346 ---EKEPKLREIIESEFCETGSLDEAIKLVKT---SGGIEEAQELAKEKANLAIHNLHCL 399
+ + KL +++ + S DE + + + GIE A+ L+++ + A ++L L
Sbjct: 247 LKEQDDDKLEAVVKH--LTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQL 304
Query: 400 PRSPFRVALEDM 411
S + LE++
Sbjct: 305 QDSNIKDYLEEI 316
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 11/286 (3%)
Query: 137 AGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRG 196
AGGKR RP L S G K L+ + A ++E+ H A+L HDDV+DE+ MRRG
Sbjct: 72 AGGKRFRPMFALLASE-----FGEKPLSENVIKAAVVVEITHLATLYHDDVMDEASMRRG 126
Query: 197 QETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD 256
+ + + VA+LAGD + A +S ++ L + + ++ + +G++++ D
Sbjct: 127 VPSANARWDNSVAILAGDILLAHASGLMSQL-GTDTVAHFAETFGELVTGQMRETVGPRD 185
Query: 257 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILD 316
D +E Y KT LIA++ A+ +G + +G +G+ FQIVDDI+D
Sbjct: 186 TD-PIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIID 244
Query: 317 FTQSAEQLGKPAASDLAKGNLTAPVIFAL-EKEP---KLREIIESEFCETGSLDEAIKLV 372
+ GK +DL +G T PV++AL E P +LR+I+ + +++ ++L+
Sbjct: 245 IFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELL 304
Query: 373 KTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418
SGG + A + ++A L LP S + AL ++ F ++R
Sbjct: 305 SQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVKR 350
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 156/308 (50%), Gaps = 28/308 (9%)
Query: 124 NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLI 183
N +L S I GK +RP LV LV+R L G T H ++ +E++HTASL+
Sbjct: 32 NALLDSVITHIRKRNGKMMRPILVLLVAR----LYGAVTPATLHAAVS--LELLHTASLV 85
Query: 184 HDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243
HDDV+DES RRGQ +V+ ++ +V+VLAGD++ A S + N E+I+L+S + +
Sbjct: 86 HDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKL 145
Query: 244 ASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYE---- 299
A GE+ Q S++ + E Y +I T +LS Q+ E
Sbjct: 146 AEGELLQLSNVSNHSFSEEVYF--------DVIRKKTAALFAACAEAAALSVQVGEEEVA 197
Query: 300 ----YGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE--KEPKLRE 353
G +G+ FQI DDI D+ S +++GKP +D+ +G LT P ++AL K+ +
Sbjct: 198 FARLLGEYIGICFQIKDDIFDYFDS-KKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQ 256
Query: 354 IIESEFCETGSLDEAIKLV---KTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALED 410
I T + DE ++L+ K +GGIE A ++ A L LP S +AL
Sbjct: 257 IAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALRT 316
Query: 411 MVMFNLER 418
+ + + R
Sbjct: 317 YLDYVVAR 324
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 135/261 (51%), Gaps = 18/261 (6%)
Query: 110 QTLNQNLKSIVGAENPV-LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHR 168
+++N+ L++ V + P+ + + AGGKR+RP L A ELVG E T
Sbjct: 13 KSVNKALEAAVQMKEPLKIHESMRYSLLAGGKRVRPMLCI----AACELVGGDESTAMPA 68
Query: 169 RLAEIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN 226
A +EMIHT SL+HDD+ +D D+RRG+ T H +G VAVLAGD + + + ++A
Sbjct: 69 ACA--VEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFAFEHVAA 126
Query: 227 LENLEVIKLISQVIKDFA---------SGEIKQASSLFDCDLELEEYLIKSYYKTASLIA 277
+ I +V+ + A +G++ S ++ L+ ++KTA+L+
Sbjct: 127 ATKGAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHKTAALLQ 186
Query: 278 ASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 337
S AI G ++ ++ +GL FQ+VDDILD T+S+++LGK A DL
Sbjct: 187 GSVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKT 246
Query: 338 TAPVIFALEKEPKLREIIESE 358
T P + +EK + + + E
Sbjct: 247 TYPKLIGVEKSKEFADRLNRE 267
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 26/252 (10%)
Query: 163 LTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSW 222
L K L I+EMI TASL+HDDV+D++ MRR +++ L+G AV+ GD ++++ +
Sbjct: 55 LLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFF 114
Query: 223 YLANLENLEVIKLISQVIKDFASGEIKQ--ASSLFDCDLELEEYLIKSYYKTASLIAAST 280
L+ + L + + +S + + GEI+ F+ D + +++ KTA I AS
Sbjct: 115 ELSKMGEL-IAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILED--KTAHFIEASL 171
Query: 281 KGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAP 340
K AI D +K ++G N G++FQI+DD+LD TQ A+ LGKP SD +G T P
Sbjct: 172 KSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLP 228
Query: 341 VIFALEK-------------EPKLREIIE---SEFCETGSLDEAIKLVKTSGGIEEAQEL 384
+ EK + EIIE +F + G ++E +K + ++A E
Sbjct: 229 YLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYS--KKALEA 286
Query: 385 AKEKANLAIHNL 396
K + NL + L
Sbjct: 287 IKGENNLILEKL 298
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 148/320 (46%), Gaps = 8/320 (2%)
Query: 102 FEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLK 161
F V L L L V +N + + +GGK LRP +L S G
Sbjct: 11 FPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFS-----TFGNA 65
Query: 162 ELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFA-QS 220
+ + A IE++H +LIHDDV+D+S RRG T+ YG R A+ AGDFMF
Sbjct: 66 ATPAQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYF 125
Query: 221 SWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAAST 280
L + + +I+ + GE+ Q + D+ L+ YL + KTA L A S
Sbjct: 126 DQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSC 185
Query: 281 KGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAP 340
A +G S+ + + G +G ++Q++DDILD+ ++ KP DL G + P
Sbjct: 186 YQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLP 245
Query: 341 VIFALEKEPK-LREIIESEFCET-GSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHC 398
++ +L P+ ++++ + T + LV G+ A++LA++ + A+ +
Sbjct: 246 LLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQ 305
Query: 399 LPRSPFRVALEDMVMFNLER 418
LP + +LE + L R
Sbjct: 306 LPVGSAQQSLEQLTRLLLRR 325
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 148/320 (46%), Gaps = 8/320 (2%)
Query: 102 FEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLK 161
F V L L L V +N + + +GGK LRP +L S G
Sbjct: 18 FPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFST-----FGNA 72
Query: 162 ELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFA-QS 220
+ + A IE++H +LIHDDV+D+S RRG T+ YG R A+ AGDFMF
Sbjct: 73 ATPAQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYF 132
Query: 221 SWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAAST 280
L + + +I+ + GE+ Q + D+ L+ YL + KTA L A S
Sbjct: 133 DQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSC 192
Query: 281 KGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAP 340
A +G S+ + + G +G ++Q++DDILD+ ++ KP DL G + P
Sbjct: 193 YQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLP 252
Query: 341 VIFALEKEPK-LREIIESEFCET-GSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHC 398
++ +L P+ ++++ + T + LV G+ A++LA++ + A+ +
Sbjct: 253 LLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQ 312
Query: 399 LPRSPFRVALEDMVMFNLER 418
LP + +LE + L R
Sbjct: 313 LPVGSAQQSLEQLTRLLLRR 332
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 131/263 (49%), Gaps = 21/263 (7%)
Query: 109 LQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHR 168
+ L +NL V + +P A AGGK R L+ V ++ EL +
Sbjct: 10 IHHLEKNLPK-VESFHPFFNEALALXLKAGGKHFRAQLLLSVVQSNK-----PELLNQAL 63
Query: 169 RLAEIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYL-- 224
+A +E IHT SLIHDD+ D +D RRG T+H+ Y A+L GD + ++ L
Sbjct: 64 DVALALEFIHTYSLIHDDLPAXDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSH 123
Query: 225 ANLENLEVIKLISQVIKDFASG----EIKQASSLF--DCDLELEEYLIKSYYKTASLIAA 278
A+L++ IKLI + F +G I QA F D L L E +KTA LIAA
Sbjct: 124 AHLKDEIKIKLIKTLA--FNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAA 181
Query: 279 STKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 338
+ K ++ S Q+Y+ G LGL FQI DDI+D T S EQ GKP +D+ K +
Sbjct: 182 ALKXGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFV 241
Query: 339 APVIFALEKEPKLREIIESEFCE 361
+ LE+ K +E + +E CE
Sbjct: 242 N--LLGLEQAIKTKENLLNE-CE 261
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 131/253 (51%), Gaps = 29/253 (11%)
Query: 124 NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELT---TKHRRLAEIIEMIHTA 180
+P L A ++ GGKR RP L V A LVG K+ + T++ ++A IE +HT
Sbjct: 40 HPYLEKAFFEMVLNGGKRFRPKLFLAVLCA---LVGQKDYSNQQTEYFKIALSIECLHTY 96
Query: 181 SLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN--LEN---LEVI 233
SLIHDD+ +D + +RR T+H Y AVL GD + S L+N LE+ +E+I
Sbjct: 97 SLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELI 156
Query: 234 KLISQVIKDFASGEIKQA--SSLFDCDLE-----LEEYLIKSYYKTASLIAASTKGAAIF 286
K++S A+G IK DC E LE+ +KTA LI+AS +
Sbjct: 157 KILS------ANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVA 210
Query: 287 SGV-DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 345
SG+ D L K + +G +GL FQ++DDI+D TQ E+ GK D AK + + L
Sbjct: 211 SGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVN--LLGL 268
Query: 346 EKEPKLREIIESE 358
E+ + +++E
Sbjct: 269 ERANNYAQTLKTE 281
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 131/253 (51%), Gaps = 29/253 (11%)
Query: 124 NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELT---TKHRRLAEIIEMIHTA 180
+P L A ++ GGKR RP L V A LVG K+ + T++ ++A IE +HT
Sbjct: 33 HPYLEKAFFEMVLNGGKRFRPKLFLAVLCA---LVGQKDYSNQQTEYFKIALSIECLHTY 89
Query: 181 SLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN--LEN---LEVI 233
SLIHDD+ +D + +RR T+H Y AVL GD + S L+N LE+ +E+I
Sbjct: 90 SLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELI 149
Query: 234 KLISQVIKDFASGEIKQA--SSLFDCDLE-----LEEYLIKSYYKTASLIAASTKGAAIF 286
K++S A+G IK DC E LE+ +KTA LI+AS +
Sbjct: 150 KILS------ANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVA 203
Query: 287 SGV-DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 345
SG+ D L K + +G +GL FQ++DDI+D TQ E+ GK D AK + + L
Sbjct: 204 SGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVN--LLGL 261
Query: 346 EKEPKLREIIESE 358
E+ + +++E
Sbjct: 262 ERANNYAQTLKTE 274
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 138/294 (46%), Gaps = 49/294 (16%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRL---AEIIEMIHTASLIHDDVLDESDMR 194
GGKRLRP L++ A AE V + + R A I+E+IH SLI+DD++D D+R
Sbjct: 44 GGKRLRP----LLTLAAAEAV-----SGQWRPALPAAAIVELIHNYSLIYDDIIDRGDVR 94
Query: 195 RGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEV--------IKLISQVIKDFASG 246
RG TV + +G A+L G WY +E + K +++VIK G
Sbjct: 95 RGLPTVRKAFGDNAAILVG-------IWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEG 147
Query: 247 EIKQASSLFDC--------------DLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGS 292
E + LF+ ++ L++Y+ KT +LIAA+ K + D
Sbjct: 148 E--RLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRG 205
Query: 293 LSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDL---AKGNLTAPVIFALEKEP 349
L++ + +G G++FQI+DD+LD ++ GK D+ +GN V + E
Sbjct: 206 LAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEG 265
Query: 350 KLR---EIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 400
+ R EI+ E E + EA+ L+ + G EEA LA A +L +P
Sbjct: 266 ERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIP 319
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 134/264 (50%), Gaps = 35/264 (13%)
Query: 110 QTLNQNLKSIVGAENPVLMSAAEQI-FGAGGKRLRPALVFLVSRATAELVGLKELTTKHR 168
++N+ L S V P+ + A + AGGKR+RP L A ELVG +E
Sbjct: 22 DSVNKALDSAVPLREPLKIHEAXRYSLLAGGKRVRPVLCI----AACELVGGEESLAXPA 77
Query: 169 RLAEIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN 226
A +E IHT SLIHDD+ D D+RRG+ T H++YG VAVLAGD + + + +LA+
Sbjct: 78 ACA--VEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLAS 135
Query: 227 LENLEV-----IKLISQVIK-----DFASGEIKQASS--LFDCDLELEEYLIKSYYKTAS 274
+ EV ++ + ++ K +G++ SS L ++ LE +KTA+
Sbjct: 136 ATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAA 195
Query: 275 LIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAK 334
L+ AS I G +++ ++ R +GL FQ+VDDILD T+S++
Sbjct: 196 LLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSK------------ 243
Query: 335 GNLTAPVIFALEKEPKLREIIESE 358
LT P + LEK + E + +E
Sbjct: 244 --LTYPKLXGLEKSREFAEKLNTE 265
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 122/251 (48%), Gaps = 19/251 (7%)
Query: 110 QTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTK 166
+ ++Q+LK+ + N VL + GGKR+RP L+ L K++ T
Sbjct: 42 EEVDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKS--DYKKILTP 99
Query: 167 HRRLAEIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYL 224
A IEMIHT SLIHDD+ +D D+RRG+ T H+++G +AVLAGD + ++ L
Sbjct: 100 ----AMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKIL 155
Query: 225 AN--LENLEVIKLISQVIKDFASGEIKQASSLFDC------DLELEEYLIKSYYKTASLI 276
+ LE + +++I D A + + D ++ L+E KT LI
Sbjct: 156 VDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELI 215
Query: 277 AASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGN 336
AS A+ + K++ +G LGL+FQI DDILD +A+ LGK D
Sbjct: 216 KASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNK 275
Query: 337 LTAPVIFALEK 347
IF LE+
Sbjct: 276 NNYITIFGLEE 286
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 145/299 (48%), Gaps = 30/299 (10%)
Query: 136 GAGGKRLRPALVFLVSRAT--AELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDM 193
G GGK +RPAL L + T A VG+ A +E++H SL+HDD++D +
Sbjct: 51 GDGGKAVRPALAVLSAEVTGAAPEVGVPG--------AVAVELVHNFSLLHDDLMDGDEQ 102
Query: 194 RRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEV---IKLISQVIKDFASGEIKQ 250
RR ++TV +++G A+L GD +FA ++ L L +E + +++ + G+ +
Sbjct: 103 RRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQD 162
Query: 251 ASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQI 310
S + +EE L KT +L+A ++ A+ G D + + +YG +LGL+FQ
Sbjct: 163 ISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQA 222
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVI----FALEKEPKLREIIE-----SEFCE 361
VDD+L + GK SDL + + PV+ +L EI+ S+F
Sbjct: 223 VDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFAN 282
Query: 362 TGSLDEAIK--LVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRV-----ALEDMVM 413
+ A + L++ +GG E + A+ + +AI L + P RV AL D V+
Sbjct: 283 FSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVD-MPDRVRDRFTALADFVV 340
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 22/213 (10%)
Query: 117 KSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEM 176
+SI E+P L E + +GGKR+RP ++ LVS + ++ A +E
Sbjct: 20 ESITLIEDPGLKKXVEHVCHSGGKRIRPIILLLVSEICSGSY------SRSLNAALAVEX 73
Query: 177 IHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLI 236
H+ASLIHDD+LD+ +RR + + +G A+L GD++ A+S +++ +VI+
Sbjct: 74 XHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGE-KVIQDF 132
Query: 237 SQVIKDFASGEIKQASSLFDCDLELEE-------YLIKSYYKTASLIAASTKGAAIFSGV 289
+ D A GE+ DL+LE+ Y Y KTASL A S A G
Sbjct: 133 GKAGXDXAEGEV--------LDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGA 184
Query: 290 DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAE 322
+ L+++ +G LG ++QIVDDIL+F + E
Sbjct: 185 EEELAERFSHFGNALGTAYQIVDDILEFLEVVE 217
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAEHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAALNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N +
Sbjct: 70 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKAR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAALNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E+ H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELYHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H SL+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLYSLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H A L+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLAFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + N +
Sbjct: 70 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKAR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAALNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + + N +
Sbjct: 70 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKAR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAALNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + RG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLASLLHDDVIDGARFARGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H ASL+HDDV+D + R G+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLASLLHDDVIDGARFRAGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
+E++H L+HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++
Sbjct: 70 LELVHLYFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 129
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
+ VI + E+ + S + + EEYL K+ +L + + A+ ++G L
Sbjct: 130 RAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGEL 185
Query: 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLRE 353
+ +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R+
Sbjct: 186 GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQ 244
Query: 354 IIES 357
+ E+
Sbjct: 245 MFEN 248
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 18/220 (8%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDV--LDESDMRR 195
GGKR+RP L + A+A+LVG ++++ A +E IH SLIHDD+ +D ++RR
Sbjct: 44 GGKRIRPMLTY----ASAQLVG--DISSLTDASAAALESIHAYSLIHDDLPAMDNDELRR 97
Query: 196 GQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLE---VIKLISQVI-----KDFASGE 247
G+ T H + A+LAGD + + L+N + + IKLI +++ +G+
Sbjct: 98 GKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQ 157
Query: 248 IKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSLSKQMYEYGRNLGL 306
+ SS + ++ L E +KT +LI AS + A+ +G V ++ Y +GL
Sbjct: 158 MIDLSSE-NKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGL 216
Query: 307 SFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346
+FQ+ DDI+D T E LGK SD T P + L+
Sbjct: 217 AFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLD 256
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 113/213 (53%), Gaps = 27/213 (12%)
Query: 135 FGAGGKRLRPALVFLVSRA--TAELVGLKELTTKHRRLAEIIEMIHTASLIHDDV--LDE 190
AGGKR+RP L+ L + T +G+K A +EMIHT SLIHDD+ +D
Sbjct: 38 LNAGGKRIRPVLLLLTLDSLNTEYELGMKS--------AIALEMIHTYSLIHDDLPAMDN 89
Query: 191 SDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENL--EV-IKLISQVIKDFASGE 247
D RRG+ T H++YG A+LAGD + ++ +++ + L EV IK++ ++ ASG
Sbjct: 90 DDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRL--SIASGH 147
Query: 248 IKQ-ASSLFD-------CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYE 299
+ + D DLE E + K+ KT +L+ + AA + VD + + +
Sbjct: 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKT--KTGALLTFAVMSAADIANVDDTTKEHLES 205
Query: 300 YGRNLGLSFQIVDDILDFTQSAEQLGKPAASDL 332
Y +LG+ FQI DD+LD +LGK SDL
Sbjct: 206 YSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDL 238
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 18/258 (6%)
Query: 96 ISLANIFEVVAED--LQTLNQNLKSIVGAENPVLMSAAEQIFG--AGGKRLRPALVFLVS 151
+SL N + ED + LN LK + A++ AA + AGGKRLRP L++
Sbjct: 1 MSLINARLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRP----LLT 56
Query: 152 RATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVA 209
AT + +G+ + +H R +E++HT SLIHDD+ +D +RRG+ T H +G +A
Sbjct: 57 VATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMA 116
Query: 210 VLAGDFMFAQS-SWYLANLENLEVIKLISQVIKDFA------SGEIKQASSLFDCDLELE 262
LAGD + + W A + + Q + A +G+ K S +L L
Sbjct: 117 TLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEH-VNLPLS 175
Query: 263 EYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAE 322
+ + KT +L+ + + I + ++ GL+FQI DDILD S
Sbjct: 176 QLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPA 235
Query: 323 QLGKPAASDLAKGNLTAP 340
++GK D + T P
Sbjct: 236 EMGKATQKDADEAKNTYP 253
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Query: 184 HDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243
HDDV+D + RRG+ET++ +YG + AV AGD + + + + N ++ + VI
Sbjct: 80 HDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKM 139
Query: 244 ASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRN 303
+ E+ + S + + EEYL K+ +L + + A+ ++G L + +Y G
Sbjct: 140 SEAELIEQLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPAL---LEGELGEDLYNLGVT 195
Query: 304 LGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIES 357
+G +Q+ DDI+DF E++GK DL G + P++ A+EK P+ R++ E+
Sbjct: 196 IGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFEN 248
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 115/251 (45%), Gaps = 23/251 (9%)
Query: 110 QTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVG--LKELTTKH 167
Q L+Q L I P L+ A GGKR RP LV++ T +++G L +L T
Sbjct: 22 QQLDQWLNRIPFQTLP-LIEAMRYGLLLGGKRARPYLVYI----TGQMLGCELSDLDTP- 75
Query: 168 RRLAEIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGD------FMFAQ 219
A +E IH SLIHDD+ +D+ ++RRG+ T H + A+L GD F
Sbjct: 76 ---ASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILA 132
Query: 220 SSWYLANLENLEVIKLISQVIKDFASGE-IKQASSLFDCD--LELEEYLIKSYYKTASLI 276
A E V L + A G + QA L + + LEE KT +L+
Sbjct: 133 EGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALM 192
Query: 277 AASTKGAAIFSGVDG-SLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKG 335
+ + A+ +G G ++ + Y +GL+FQ+ DDILD E LGKP SD
Sbjct: 193 RCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELN 252
Query: 336 NLTAPVIFALE 346
T P + LE
Sbjct: 253 KSTYPALLGLE 263
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 116/255 (45%), Gaps = 42/255 (16%)
Query: 110 QTLNQNLKSIVGAENPV-LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHR 168
++N+ L S V P+ + A AGGKR+RP L A ELVG +E
Sbjct: 22 DSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCI----AACELVGGEESLAMPA 77
Query: 169 RLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228
A +EMIHT SLIHDDV YG VAVLAGD + + + +LA+
Sbjct: 78 ACA--VEMIHTMSLIHDDV----------------YGEDVAVLAGDALLSFAFEHLASAT 119
Query: 229 NLEV-----IKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGA 283
+ EV ++ + ++ K + + + ++ LE +KTA+L+ AS
Sbjct: 120 SSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISNVGLEHLKFIHLHKTAALLEASAVLG 179
Query: 284 AIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIF 343
I G +++ ++ R +GL FQ+VDDILD T + LT P +
Sbjct: 180 GIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTIA--------------DKLTYPKLM 225
Query: 344 ALEKEPKLREIIESE 358
LEK + E + +E
Sbjct: 226 GLEKSREFAEKLNTE 240
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 115/238 (48%), Gaps = 19/238 (7%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESD--MRR 195
GGKRLRP FLV + A L G E + +E +H SL+HDD+ D +RR
Sbjct: 84 GGKRLRP---FLVIESVALLGGDAEAGLH---VGAALECLHCYSLVHDDLPAMDDDDLRR 137
Query: 196 GQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-LEVIKLISQVIKDFASGEIKQASSL 254
GQ TVH+ + A+LAGD + + +A+ +N L + + VI + I +
Sbjct: 138 GQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGG 197
Query: 255 FDCDLELEE-------YLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLS 307
DL E+ + KT +L+ + + AI +G + + +++ +G +GLS
Sbjct: 198 QALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLS 257
Query: 308 FQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSL 365
FQ+ DD+LD T A +GK D A+G T + AL E RE ++ + E L
Sbjct: 258 FQLADDLLDLTADAATMGKATGKDAARGKGT---LVALRGEAWAREKLQEQVAEASEL 312
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 119/258 (46%), Gaps = 20/258 (7%)
Query: 123 ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASL 182
EN L A AGGKRLRP LV A KE+ T+ ++A +EMIHT SL
Sbjct: 34 ENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQ-----KEMETQDYQVAASLEMIHTYSL 88
Query: 183 IHDDVLDESD--MRRGQETVHQLYGTRVAVLAGDFMF--AQSSWYLANLENLEVIKLISQ 238
IHDD+ D +RRG+ T H+++G A+LAGD + A L+ L E + L+ Q
Sbjct: 89 IHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQ 148
Query: 239 VIKDFASGEIKQASSLF------DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGS 292
+ K A+G S L LEE KT +LI + + +
Sbjct: 149 LAK--AAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEE 206
Query: 293 LSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLR 352
+ + ++ + GL+FQI DD+LD T + LGK D A T P + + +
Sbjct: 207 VIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGI---AGAK 263
Query: 353 EIIESEFCETGSLDEAIK 370
+ + + E ++ E IK
Sbjct: 264 DALTHQLAEGSAVLEKIK 281
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 21/214 (9%)
Query: 123 ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASL 182
E +L SA GG R+RP LV + E +G++E +A +E+ HTASL
Sbjct: 35 EEAMLYSAT-----VGGXRIRPLLVLTL----GEDLGVEEEXLLDVAVA--VELFHTASL 83
Query: 183 IHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVI 240
IHDD+ +D +D RRG + H+ YG +A+LAGD +F + ++ + N + + S+
Sbjct: 84 IHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETA 143
Query: 241 KDFASGEIKQASSLFD-CDLELEEYLIKSYY--KTASLIAASTKGAAIFSGVDGSLSKQM 297
GE F+ +E+ + +++ Y T +L A I G D M
Sbjct: 144 YXLLLGEAMDVE--FERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXD---HTXM 198
Query: 298 YEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASD 331
G G++FQI DD+ D S E++GK D
Sbjct: 199 XLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 118/239 (49%), Gaps = 25/239 (10%)
Query: 135 FGA--GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESD 192
+GA GGKRLRP LV+ AT + G+ T A +E IH SLIHDD+ D
Sbjct: 39 YGALLGGKRLRPFLVY----ATGHMFGVS--TNTLDAPAAAVECIHAYSLIHDDLPAMDD 92
Query: 193 --MRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEV-----IKLISQVIKDFAS 245
+RRG T H +G A+LAGD + + L++ + EV I +IS++ AS
Sbjct: 93 DDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELAS--AS 150
Query: 246 GEIKQ-ASSLFDCDLELEEYLIKSY-----YKTASLIAASTKGAAIFSGVDGSLSKQMYE 299
G D D E + + + +KT +LI A+ + A+ +G G + + +
Sbjct: 151 GIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLD 210
Query: 300 -YGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIE 356
Y ++GL+FQ+ DDILD LGK +D G T P + LE+ K R++I+
Sbjct: 211 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 269
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 118/239 (49%), Gaps = 25/239 (10%)
Query: 135 FGA--GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESD 192
+GA GGKRLRP LV+ AT + G+ T A +E IH SLIHDD+ D
Sbjct: 38 YGALLGGKRLRPFLVY----ATGHMFGVS--TNTLDAPAAAVECIHAYSLIHDDLPAMDD 91
Query: 193 --MRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEV-----IKLISQVIKDFAS 245
+RRG T H +G A+LAGD + + L++ + EV I +IS++ AS
Sbjct: 92 DDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELAS--AS 149
Query: 246 GEIKQ-ASSLFDCDLELEEYLIKSY-----YKTASLIAASTKGAAIFSGVDGSLSKQMYE 299
G D D E + + + +KT +LI A+ + A+ +G G + + +
Sbjct: 150 GIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLD 209
Query: 300 -YGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIE 356
Y ++GL+FQ+ DDILD LGK +D G T P + LE+ K R++I+
Sbjct: 210 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 117/239 (48%), Gaps = 25/239 (10%)
Query: 135 FGA--GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESD 192
+GA GGKRLRP LV+ AT + G+ T A +E IH SLIHDD+ D
Sbjct: 62 YGALLGGKRLRPFLVY----ATGHMFGVS--TNTLDAPAAAVECIHAYSLIHDDLPAMDD 115
Query: 193 --MRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEV-----IKLISQVIKDFAS 245
+RRG T H +G A+LAGD + + L++ EV I +IS++ AS
Sbjct: 116 DDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDANMPEVSDRDRISMISELAS--AS 173
Query: 246 GEIKQ-ASSLFDCDLELEEYLIKSY-----YKTASLIAASTKGAAIFSGVDGSLSKQMYE 299
G D D E + + + +KT +LI A+ + A+ +G G + + +
Sbjct: 174 GIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLD 233
Query: 300 -YGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIE 356
Y ++GL+FQ+ DDILD LGK +D G T P + LE+ K R++I+
Sbjct: 234 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 292
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 19/232 (8%)
Query: 125 PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIH 184
P + SA +GGKR+RP LV+L G+ ++ +A +E+ H SLIH
Sbjct: 36 PQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDI------IAAALELTHCYSLIH 89
Query: 185 DDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSS----WYLANLENLEVIKLISQ 238
DD+ +D D+RRG+ + H+ + A+L GD M A + L+ L + I+Q
Sbjct: 90 DDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQ 149
Query: 239 V------IKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGA-AIFSGVDG 291
V I SG+ S L + E+ KT LI A + A V
Sbjct: 150 VLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSE 209
Query: 292 SLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIF 343
+ + YG+++GL FQ+ DD LD + LGK +SD A T +F
Sbjct: 210 QIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLF 261
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 44/233 (18%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDM--RR 195
GGKR+RP L + A E +G K + A +E+IH SL+HDD+ D RR
Sbjct: 43 GGKRVRPLLAY----AACEALGGK--PEQANGAACAVELIHAYSLVHDDLPAXDDDDLRR 96
Query: 196 GQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIK------ 249
GQ T H+ + A+LAGD L++L L+ + D AS EI+
Sbjct: 97 GQPTTHKAFDEACAILAGD-----------GLQSLAFSALLDPALSD-ASAEIRLRXVTT 144
Query: 250 -------------QASSLFDCDLELEEYLIK--SYYKTASLIAASTKGAAIFSGV--DGS 292
QA L L+L++ ++ +KT +LI AS A+ SG G
Sbjct: 145 LAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGE 204
Query: 293 LSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 345
L K + Y + +GL+FQ+ DDILD LGK +D+A+ T P + L
Sbjct: 205 L-KALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGL 256
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDV--LDESDMRR 195
GGKRLR FL +A + G+ LA +E +H SL+HDD+ +D D+RR
Sbjct: 41 GGKRLR---AFLAIE-SAAIHGISMAQAMPAALA--VEALHAYSLVHDDMPCMDNDDLRR 94
Query: 196 GQETVHQLYGTRVAVLAGDFMFAQSSWY-------LANLENLEVIKLISQVIKDFASGEI 248
G TVH+ + AVLAGD + Q+ + L + EN V + + A G +
Sbjct: 95 GLPTVHKKWDDATAVLAGDAL--QTLAFELCTDPVLGSAEN-RVALVAALAQASGAEGMV 151
Query: 249 KQ-----ASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVD-GSLSKQMYEYGR 302
A+ L L+E + KT +LI+ + + AI +G D G L+ Y
Sbjct: 152 YGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTA----YAT 207
Query: 303 NLGLSFQIVDDILDFTQSAEQLGK 326
LGL+FQI DDILD + E GK
Sbjct: 208 ALGLAFQIADDILDVEGNEEAAGK 231
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 107/233 (45%), Gaps = 44/233 (18%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDM--RR 195
GGKR+RP L + A E +G K A +E+IH SL+HDD+ D RR
Sbjct: 50 GGKRVRPLLAY----AACEALGGKPEQANGAACA--VELIHAYSLVHDDLPAXDDDDLRR 103
Query: 196 GQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIK------ 249
GQ T H+ + A+LAGD L++L L+ + D AS EI+
Sbjct: 104 GQPTTHKAFDEAXAILAGD-----------GLQSLAFSALLDPALSD-ASAEIRLRXVTT 151
Query: 250 -------------QASSLFDCDLELEEYLIK--SYYKTASLIAASTKGAAIFSGV--DGS 292
QA L L+L++ ++ +KT +LI AS A+ SG G
Sbjct: 152 LAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASGRAEKGE 211
Query: 293 LSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 345
L K + Y + +GL+FQ+ DDILD LGK +D+A+ T P + L
Sbjct: 212 L-KALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGL 263
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 25/252 (9%)
Query: 110 QTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELV--GLKELTTKH 167
Q L + L + + +P+ + GGK LR L + A + GL+ T
Sbjct: 10 QALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATA-- 67
Query: 168 RRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLA-- 225
+E+ L+HDD+ D S+ RRG+ +H+L+ +A+ AGD M A+ LA
Sbjct: 68 ------LELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEG 121
Query: 226 ---NLENLEVIKLISQVIKDFASGE----IKQASSLFDCDLELEEYLIKSYYKTASLIA- 277
L EV+ +V++ A G+ + F DL E+Y +K A A
Sbjct: 122 LARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTF--DLRPEDYFRMVAHKAAYYTAV 179
Query: 278 ASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 337
A + A+ +G + + E G LG +FQIVDD+L+ + E GK A DL +G
Sbjct: 180 APLRLGALLAGKTPPAAYE--EGGLRLGTAFQIVDDVLNL-EGGEAYGKERAGDLYEGKR 236
Query: 338 TAPVIFALEKEP 349
T ++ LE+ P
Sbjct: 237 TLILLRFLEEAP 248
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 104/244 (42%), Gaps = 40/244 (16%)
Query: 138 GGKRLRPALV---FLVSRATAELVGLKELTTKHRRL---AEIIEMIHTASLIHDDVLDES 191
GGKR+RP FL ++ G K + K + A +E I +LIHDD++D S
Sbjct: 61 GGKRIRPLYAWAGFLAAQ------GHKNSSEKLESVLDAAASLEFIQACALIHDDIIDSS 114
Query: 192 DMRRGQETVHQL----------------YGTRVAVLAGDFMFAQSSWYLANLENLEVIKL 235
D RRG TVH+ +G V++LAGD W L++ +
Sbjct: 115 DTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDXALV---WAEDXLQDSGLSAE 171
Query: 236 ISQVIKDFASGEIKQASSLFDCDLELEEYLIKSY--------YKTASL-IAASTKGAAIF 286
+D G + D+ LE + +S +KTA+ IA A
Sbjct: 172 ALARTRDAWRGXRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASI 231
Query: 287 SGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346
+G L + YG ++G++FQ+ DD+L GKPA D+ +G T + AL+
Sbjct: 232 AGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQ 291
Query: 347 KEPK 350
+ K
Sbjct: 292 RADK 295
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 104/226 (46%), Gaps = 28/226 (12%)
Query: 137 AGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESD--MR 194
GGKR+RP L + AT + +G+ A +E IH SLIHDD+ D +R
Sbjct: 48 GGGKRMRPLLTY----ATGQTIGVAADLLDGPACA--VEFIHVYSLIHDDLPAMDDDDLR 101
Query: 195 RGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEV-----IKLISQVIKDFASGE-- 247
RG+ T H+ Y A+LAGD + A + LA ++ V I +I + K ASG
Sbjct: 102 RGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAK--ASGPAG 159
Query: 248 ------IKQASSLFDCDLE-LEEYLIKSYYKTASLIAASTKGAAIF-SGVDGSLSKQMYE 299
I AS DL LE I+ KT +LI AS + A + G+ ++
Sbjct: 160 MVGGQAIDLASVGKKLDLPGLENMHIR---KTGALIRASVRLACLARPGLPAEQFDRLDH 216
Query: 300 YGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 345
Y + +GL+FQI DDILD + LGK D P + L
Sbjct: 217 YAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGL 262
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 15/228 (6%)
Query: 126 VLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHD 185
+L+ + + GK++R L S+A + + E K + + E+ EM+H ASL+ D
Sbjct: 12 ILLEPYKYLLQLPGKQVRTKL----SQAFNHWLKVPE--DKLQIIIEVTEMLHNASLLID 65
Query: 186 DVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFAS 245
D+ D S +RRG H +YG + + ++++ + L++ + +KL ++ + +
Sbjct: 66 DIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQ 125
Query: 246 GE---IKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGR 302
G+ I + + C E EEY KT L + +FS L +
Sbjct: 126 GQGLDIYWRDN-YTCPTE-EEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLL----N 179
Query: 303 NLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPK 350
LGL FQI DD + K DL +G + P I A+ P+
Sbjct: 180 TLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPE 227
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 171 AEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENL 230
A I+E++H SL+ DDV+D+ D RRG +T +YG A++A D++ A+S NL
Sbjct: 74 AAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNL-GA 132
Query: 231 EVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVD 290
+V+ ++ V + + G+ DLE E + +KTA LI A+ + G
Sbjct: 133 DVVTYLADVAQRLSVGQA--------LDLEGERDK-AAEFKTAPLIEAALVMPLVILG-R 182
Query: 291 GSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLA 333
L + + G LG+ +Q DD D E + +P +A
Sbjct: 183 RELIETAKKLGTKLGILYQYSDDYSD-----ENVERPETKSIA 220
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 28/277 (10%)
Query: 115 NLKSIVGAENPVLMSAA-EQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEI 173
N + ++N L+S I GK R L+ ++R + +L +++I
Sbjct: 15 NNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMN--LPKDQLAI----VSQI 68
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLE-- 231
+E++H +SL+ DD+ D + +RRGQ T H ++G + ++M+ ++ ++ L E
Sbjct: 69 VELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPL 128
Query: 232 ---VIKLISQVIKDFASGE---IKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAI 285
+I + ++ + + G+ I L + E YL KT L + +
Sbjct: 129 YHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEA 188
Query: 286 FSGVDGSLSKQMYEYGRNLGLSFQIVDDIL---DFTQSAEQLGKPAASDLAKGNLTAPVI 342
S + + LG+ +QI DD L DF S+E K A D+ +G L+ P++
Sbjct: 189 LSP-SSHHGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSE---KGFAEDITEGKLSFPIV 244
Query: 343 FALE------KEPKLREIIESEFCETGSLDEAIKLVK 373
AL + + EI+ T D +KL++
Sbjct: 245 HALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQ 281
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
IE++H+ASL DD++D RRG + +YG R + +++ + + + +
Sbjct: 78 IEILHSASLALDDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDAL 137
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
++ KD + G ++ ++D +Y+ KT SL ST +A ++ +
Sbjct: 138 NTSIELEKDTSVGALRD---MYDN----SDYIRTIELKTGSLFKLSTVLSA-YASKHYNT 189
Query: 294 SKQMYEYGRNLGLSFQIVDDILDF-TQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLR 352
+QM + G+ LG+ +Q++DD +D+ T+ E++ + +A +F +E KL
Sbjct: 190 KQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEI-----------DGSAKQLFKYYREGKLE 238
Query: 353 EIIESEFCE 361
E + S + E
Sbjct: 239 EYVRSVYLE 247
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 93/204 (45%), Gaps = 28/204 (13%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESD--MRR 195
GGKRLR L +A + G+ A +E +H SL+HDD + +RR
Sbjct: 40 GGKRLRAFLAI----ESAAIHGISXAQAX--PAALAVEALHAYSLVHDDXPCXDNDDLRR 93
Query: 196 GQETVHQLYGTRVAVLAGDFMFAQSSWY-------LANLENLEVIKLISQVIKDFASGEI 248
G TVH+ + AVLAGD + Q+ + L + EN V + + A G +
Sbjct: 94 GLPTVHKKWDDATAVLAGDAL--QTLAFELCTDPVLGSAEN-RVALVAALAQASGAEGXV 150
Query: 249 KQ-----ASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVD-GSLSKQMYEYGR 302
A+ L L+E + KT +LI+ + + AI +G D G L+ Y
Sbjct: 151 YGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTA----YAT 206
Query: 303 NLGLSFQIVDDILDFTQSAEQLGK 326
LGL+FQI DDILD + E GK
Sbjct: 207 ALGLAFQIADDILDVEGNEEAAGK 230
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVI 233
IE++H+ASL D++D RRG + +YG R + +++ + + + +
Sbjct: 78 IEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDAL 137
Query: 234 KLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSL 293
++ KD + G ++ ++D +Y+ KT SL ST +A ++ +
Sbjct: 138 NTSIELWKDTSVGALRD---MYDN----SDYIRTIELKTGSLFKLSTVLSA-YASKHYNT 189
Query: 294 SKQMYEYGRNLGLSFQIVDDILDF-TQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLR 352
+QM + G+ LG+ +Q++DD +D+ T+ E++ A +F +E KL
Sbjct: 190 KQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQ-----------LFKYYREGKLE 238
Query: 353 EIIESEFCE 361
E + S + E
Sbjct: 239 EYVRSVYLE 247
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 119/309 (38%), Gaps = 59/309 (19%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRR----LAEIIEMIHTASLIHDDVLDESDM 193
GGK R LV L+ E V +++ + LA IE++ A L+ DD++D+ +M
Sbjct: 78 GGKNNRGILVILI----YEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGEM 133
Query: 194 RRGQETVHQLYGTRVAVLAGDFMFAQSSWY----------------LANLENLEVIKLIS 237
RR + + L D + +S Y +A + + +I
Sbjct: 134 RRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIG 193
Query: 238 QVIK-DFASGEIKQASSLFDC-----------DLELEEYLI--------KSYYKTASLIA 277
Q + + S + A D D+ + + + +YY I
Sbjct: 194 QHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIV 253
Query: 278 ASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 337
A I VD + K++ + +G FQI DD LD + + GK SD+ L
Sbjct: 254 CGMLLAGI--AVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKL 310
Query: 338 TAPVI--FALEKEPKLREIIESEFCET-------GSLDEAIKLVKTSGGIEEAQELAKEK 388
T P+I F L EP +I+++ SL E K+ K E+AQ K K
Sbjct: 311 TWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQ---KAK 367
Query: 389 ANLAIHNLH 397
AI+ LH
Sbjct: 368 ILSAINELH 376
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 21/203 (10%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN---LENL 230
IE+ ASL+ DD++D+S RRGQ ++ G + + F+ S + + +
Sbjct: 106 IELFQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRP 165
Query: 231 EVIKLISQVIKDFASGEIKQASSLFDC---DLELEEYLIKSY-----YKTASLIAASTKG 282
+ L+ ++ E+ Q L ++L + + Y YKTA
Sbjct: 166 YYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVA 225
Query: 283 AAIFS-GVDGSLSKQMYEYGR----NLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 337
AA++ G+D SK+ +E + +G FQI DD LD GK +D+
Sbjct: 226 AAMYMVGID---SKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGK-VGTDIQDNKC 281
Query: 338 TAPVIFALEK-EPKLREIIESEF 359
+ V+ L++ P+ R+++E +
Sbjct: 282 SWLVVQCLQRVTPEQRQLLEDNY 304
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 32/220 (14%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAE------IIEMIHTASLIHDDVLDES 191
GGK R V V+ + E TK R L + +IE + L+ DD++D S
Sbjct: 45 GGKYFRGMTVVNVAEGFLAVTQHDE-ATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 103
Query: 192 DMRRGQETVHQLYGTRVAVLAGDFMFAQS-----SW-YLANLENL-EVIKLISQVIKDFA 244
MRRG+ ++ G D + +S +W Y A+ L +++ L +V A
Sbjct: 104 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATA 163
Query: 245 SGEIKQASSLFDC---DLELEEYLIKSY-------------YKTASLIAASTKGAAIF-S 287
G++ +S+ D D E+ + + + YKT +F S
Sbjct: 164 VGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVS 223
Query: 288 GVDGSLSKQMYEYGRNL-GLSFQIVDDILDFTQSAEQLGK 326
S+ + E +L G FQ+ DD++D EQLGK
Sbjct: 224 EAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 263
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 32/220 (14%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAE------IIEMIHTASLIHDDVLDES 191
GGK R V V+ + E TK R L + +IE + L+ DD++D S
Sbjct: 46 GGKYFRGMTVVNVAEGFLAVTQHDE-ATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104
Query: 192 DMRRGQETVHQLYGTRVAVLAGDFMFAQS-----SW-YLANLENL-EVIKLISQVIKDFA 244
MRRG+ ++ G D + +S +W Y A+ L +++ L +V A
Sbjct: 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATA 164
Query: 245 SGEIKQASSLFDC---DLELEEYLIKSY-------------YKTASLIAASTKGAAIF-S 287
G++ +S+ D D E+ + + + YKT +F S
Sbjct: 165 VGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVS 224
Query: 288 GVDGSLSKQMYEYGRNL-GLSFQIVDDILDFTQSAEQLGK 326
S+ + E +L G FQ+ DD++D EQLGK
Sbjct: 225 EAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 31/208 (14%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN---LENL 230
IE+ ASL+ DD++D+S RRGQ ++ G + + F+ S + + +
Sbjct: 106 IELFQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRP 165
Query: 231 EVIKLISQVIKDFASGEIKQASSLFDC---DLELEEYLIKSY-----YKTASLIAASTKG 282
+ L+ ++ E+ Q L ++L + + Y YKTA
Sbjct: 166 YYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVA 225
Query: 283 AAIFS-GVDGSLSKQMYEYGR----NLGLSFQIVDDILDFTQSAEQLGKPA-----ASDL 332
AA++ G+D SK+ +E + +G FQI DD LD G PA +D+
Sbjct: 226 AAMYMVGID---SKEEHENAKAILLEMGEYFQIQDDYLDC------FGDPALTGAVGTDI 276
Query: 333 AKGNLTAPVIFALEK-EPKLREIIESEF 359
+ V+ L++ P+ R+++E +
Sbjct: 277 QDNKCSWLVVQCLQRVTPEQRQLLEDNY 304
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 32/220 (14%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAE------IIEMIHTASLIHDDVLDES 191
GGK R V V+ + E TK R L + +IE + L+ DD++D S
Sbjct: 46 GGKYFRGMTVVNVAEGFLAVTQHDE-ATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104
Query: 192 DMRRGQETVHQLYGTRVAVLAGDFMFAQS-----SW-YLANLENL-EVIKLISQVIKDFA 244
MRRG+ ++ G D + +S +W Y A+ L +++ L +V A
Sbjct: 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATA 164
Query: 245 SGEIKQASSLFDC---DLELEEYLIKSY-------------YKTASLIAASTKGAAIF-S 287
G++ +S+ D D E+ + + + YKT +F S
Sbjct: 165 VGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVS 224
Query: 288 GVDGSLSKQMYEYGRNL-GLSFQIVDDILDFTQSAEQLGK 326
S+ + E +L G FQ+ DD++D EQLGK
Sbjct: 225 EAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264
>pdb|1ZW5|A Chain A, X-Ray Structure Of Farnesyl Diphosphate Synthase Protein
Length = 355
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 55/319 (17%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVF-----LVSRATAEL 157
+V A++ Q Q+ IV M E G RL+ L + +R +
Sbjct: 10 DVYAQEKQDFVQHFSQIVRVLTEDEMGHPE--IGDAIARLKEVLEYNAIGGKYNRGLTVV 67
Query: 158 VGLKELTTKHRRLAE----------IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207
V +EL ++ A+ +E++ L+ DD++D S RRGQ +Q G
Sbjct: 68 VAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVG 127
Query: 208 VAVLAGDFMFAQSSWYLANL---ENLEVIKLISQVIKDFASGEIKQASSLFDC---DLEL 261
+ + + + L L E + LI ++ EI Q L +++L
Sbjct: 128 LDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDL 187
Query: 262 EEYLIKSY-----YKTASLIAASTKGAAIF-SGVDG-----SLSKQMYEYGRNLGLSFQI 310
+ K Y YKTA AA++ +G+DG + K + E +G FQI
Sbjct: 188 VRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE----MGEFFQI 243
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIK 370
DD LD GK +D+ + V+ L++ + E +
Sbjct: 244 QDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQR----------------ATPEQYQ 286
Query: 371 LVKTSGGIEEAQELAKEKA 389
++K + G +EA+++A+ KA
Sbjct: 287 ILKENYGQKEAEKVARVKA 305
>pdb|2F7M|F Chain F, Crystal Structure Of Unliganded Human Fpps
pdb|2F89|F Chain F, Crystal Structure Of Human Fpps In Complex With
Pamidronate
pdb|2F8C|F Chain F, Crystal Structure Of Fpps In Complex With Zoledronate
pdb|2F8Z|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Isopentenyl Diphosphate
pdb|2F92|F Chain F, Crystal Structure Of Human Fpps In Complex With
Alendronate
pdb|2F94|F Chain F, Crystal Structure Of Human Fpps In Complex With
Ibandronate
pdb|2F9K|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Zn2+
pdb|3N1V|F Chain F, Human Fpps Complex With Fbs_01
pdb|3N1W|F Chain F, Human Fpps Complex With Fbs_02
pdb|3N3L|F Chain F, Human Fpps Complex With Fbs_03
pdb|3N49|F Chain F, Human Fpps Complex With Nov_292
pdb|3N5H|F Chain F, Human Fpps Complex With Nov_304
pdb|3N5J|F Chain F, Human Fpps Complex With Nov_311
pdb|3N6K|F Chain F, Human Fpps Complex With Nov_823
pdb|3N45|F Chain F, Human Fpps Complex With Fbs_04 And Zoledronic AcidMG2+
pdb|3N46|F Chain F, Human Fpps Complex With Nov_980 And Zoledronic AcidMG2+
Length = 350
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 55/319 (17%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVF-----LVSRATAEL 157
+V A++ Q Q+ IV M E G RL+ L + +R +
Sbjct: 5 DVYAQEKQDFVQHFSQIVRVLTEDEMGHPE--IGDAIARLKEVLEYNAIGGKYNRGLTVV 62
Query: 158 VGLKELTTKHRRLAE----------IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207
V +EL ++ A+ +E++ L+ DD++D S RRGQ +Q G
Sbjct: 63 VAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVG 122
Query: 208 VAVLAGDFMFAQSSWYLANL---ENLEVIKLISQVIKDFASGEIKQASSLFDC---DLEL 261
+ + + + L L E + LI ++ EI Q L +++L
Sbjct: 123 LDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDL 182
Query: 262 EEYLIKSY-----YKTASLIAASTKGAAIF-SGVDG-----SLSKQMYEYGRNLGLSFQI 310
+ K Y YKTA AA++ +G+DG + K + E +G FQI
Sbjct: 183 VRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE----MGEFFQI 238
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIK 370
DD LD GK +D+ + V+ L++ + E +
Sbjct: 239 QDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQR----------------ATPEQYQ 281
Query: 371 LVKTSGGIEEAQELAKEKA 389
++K + G +EA+++A+ KA
Sbjct: 282 ILKENYGQKEAEKVARVKA 300
>pdb|3B7L|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Minodronate
Length = 356
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 55/319 (17%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVF-----LVSRATAEL 157
+V A++ Q Q+ IV M E G RL+ L + +R +
Sbjct: 11 DVYAQEKQDFVQHFSQIVRVLTEDEMGHPE--IGDAIARLKEVLEYNAIGGKYNRGLTVV 68
Query: 158 VGLKELTTKHRRLAE----------IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207
V +EL ++ A+ +E++ L+ DD++D S RRGQ +Q G
Sbjct: 69 VAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVG 128
Query: 208 VAVLAGDFMFAQSSWYLANL---ENLEVIKLISQVIKDFASGEIKQASSLFDC---DLEL 261
+ + + + L L E + LI ++ EI Q L +++L
Sbjct: 129 LDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDL 188
Query: 262 EEYLIKSY-----YKTASLIAASTKGAAIF-SGVDG-----SLSKQMYEYGRNLGLSFQI 310
+ K Y YKTA AA++ +G+DG + K + E +G FQI
Sbjct: 189 VRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE----MGEFFQI 244
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIK 370
DD LD GK +D+ + V+ L++ + E +
Sbjct: 245 QDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQR----------------ATPEQYQ 287
Query: 371 LVKTSGGIEEAQELAKEKA 389
++K + G +EA+++A+ KA
Sbjct: 288 ILKENYGQKEAEKVARVKA 306
>pdb|3RYE|A Chain A, Human Fdps Synthase In Complex With A N-Methyl Pyridinum
Bisphosphonate
pdb|3S4J|A Chain A, Human Fdps Synthase In Complex With A Rigid Analog Of
Risedronate
Length = 349
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 55/319 (17%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVF-----LVSRATAEL 157
+V A++ Q Q+ IV M E G RL+ L + +R +
Sbjct: 4 DVYAQEKQDFVQHFSQIVRVLTEDEMGHPE--IGDAIARLKEVLEYNAIGGKYNRGLTVV 61
Query: 158 VGLKELTTKHRRLAE----------IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207
V +EL ++ A+ +E++ L+ DD++D S RRGQ +Q G
Sbjct: 62 VAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVG 121
Query: 208 VAVLAGDFMFAQSSWYLANL---ENLEVIKLISQVIKDFASGEIKQASSLFDC---DLEL 261
+ + + + L L E + LI ++ EI Q L +++L
Sbjct: 122 LDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDL 181
Query: 262 EEYLIKSY-----YKTASLIAASTKGAAIF-SGVDG-----SLSKQMYEYGRNLGLSFQI 310
+ K Y YKTA AA++ +G+DG + K + E +G FQI
Sbjct: 182 VRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE----MGEFFQI 237
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIK 370
DD LD GK +D+ + V+ L++ + E +
Sbjct: 238 QDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQR----------------ATPEQYQ 280
Query: 371 LVKTSGGIEEAQELAKEKA 389
++K + G +EA+++A+ KA
Sbjct: 281 ILKENYGQKEAEKVARVKA 299
>pdb|1YQ7|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Risedronate
pdb|1YV5|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Risedronate
pdb|2OPN|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 527
pdb|2OPM|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 461
Length = 374
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 55/319 (17%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVF-----LVSRATAEL 157
+V A++ Q Q+ IV M E G RL+ L + +R +
Sbjct: 29 DVYAQEKQDFVQHFSQIVRVLTEDEMGHPE--IGDAIARLKEVLEYNAIGGKYNRGLTVV 86
Query: 158 VGLKELTTKHRRLAE----------IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207
V +EL ++ A+ +E++ L+ DD++D S RRGQ +Q G
Sbjct: 87 VAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVG 146
Query: 208 VAVLAGDFMFAQSSWYLANL---ENLEVIKLISQVIKDFASGEIKQASSLFDC---DLEL 261
+ + + + L L E + LI ++ EI Q L +++L
Sbjct: 147 LDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDL 206
Query: 262 EEYLIKSY-----YKTASLIAASTKGAAIF-SGVDG-----SLSKQMYEYGRNLGLSFQI 310
+ K Y YKTA AA++ +G+DG + K + E +G FQI
Sbjct: 207 VRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE----MGEFFQI 262
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIK 370
DD LD GK +D+ + V+ L++ + E +
Sbjct: 263 QDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQR----------------ATPEQYQ 305
Query: 371 LVKTSGGIEEAQELAKEKA 389
++K + G +EA+++A+ KA
Sbjct: 306 ILKENYGQKEAEKVARVKA 324
>pdb|4DEM|F Chain F, Crystal Structure Of Human Fpps In Complex With Ys_04_70
pdb|4H5D|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Pyrophosphate
pdb|4H5E|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Isopentenyl Pyrophosphate
pdb|4H5C|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Phosphate
Length = 375
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 55/319 (17%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVF-----LVSRATAEL 157
+V A++ Q Q+ IV M E G RL+ L + +R +
Sbjct: 30 DVYAQEKQDFVQHFSQIVRVLTEDEMGHPE--IGDAIARLKEVLEYNAIGGKYNRGLTVV 87
Query: 158 VGLKELTTKHRRLAE----------IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207
V +EL ++ A+ +E++ L+ DD++D S RRGQ +Q G
Sbjct: 88 VAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVG 147
Query: 208 VAVLAGDFMFAQSSWYLANL---ENLEVIKLISQVIKDFASGEIKQASSLFDC---DLEL 261
+ + + + L L E + LI ++ EI Q L +++L
Sbjct: 148 LDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDL 207
Query: 262 EEYLIKSY-----YKTASLIAASTKGAAIF-SGVDG-----SLSKQMYEYGRNLGLSFQI 310
+ K Y YKTA AA++ +G+DG + K + E +G FQI
Sbjct: 208 VRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE----MGEFFQI 263
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIK 370
DD LD GK +D+ + V+ L++ + E +
Sbjct: 264 QDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQR----------------ATPEQYQ 306
Query: 371 LVKTSGGIEEAQELAKEKA 389
++K + G +EA+++A+ KA
Sbjct: 307 ILKENYGQKEAEKVARVKA 325
>pdb|2RAH|A Chain A, Human Fdps Synthase In Complex With Novel Inhibitor
pdb|2VF6|A Chain A, Human Fdps Synthase In Complex With Minodronate
Length = 378
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 55/319 (17%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVF-----LVSRATAEL 157
+V A++ Q Q+ IV M E G RL+ L + +R +
Sbjct: 33 DVYAQEKQDFVQHFSQIVRVLTEDEMGHPE--IGDAIARLKEVLEYNAIGGKYNRGLTVV 90
Query: 158 VGLKELTTKHRRLAE----------IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207
V +EL ++ A+ +E++ L+ DD++D S RRGQ +Q G
Sbjct: 91 VAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVG 150
Query: 208 VAVLAGDFMFAQSSWYLANL---ENLEVIKLISQVIKDFASGEIKQASSLFDC---DLEL 261
+ + + + L L E + LI ++ EI Q L +++L
Sbjct: 151 LDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDL 210
Query: 262 EEYLIKSY-----YKTASLIAASTKGAAIF-SGVDG-----SLSKQMYEYGRNLGLSFQI 310
+ K Y YKTA AA++ +G+DG + K + E +G FQI
Sbjct: 211 VRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE----MGEFFQI 266
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIK 370
DD LD GK +D+ + V+ L++ + E +
Sbjct: 267 QDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQR----------------ATPEQYQ 309
Query: 371 LVKTSGGIEEAQELAKEKA 389
++K + G +EA+++A+ KA
Sbjct: 310 ILKENYGQKEAEKVARVKA 328
>pdb|3EGT|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
pdb|3EGT|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-722
Length = 413
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 39/186 (20%)
Query: 173 IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEV 232
+IE + L+ DD++D S RRG+ ++ V D + +S ++ +
Sbjct: 137 MIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFAD 196
Query: 233 IKLISQVIKDF-------ASGEIKQASSLFDCD-----------LELEEYLIKSY----- 269
+ ++ F A G++ +S+FD + + E+ + +Y
Sbjct: 197 RPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVK 256
Query: 270 YKTASL---------IAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 320
YKTA + S + GV L+ M EY FQ+ DD++D
Sbjct: 257 YKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEY-------FQVQDDVMDCFTP 309
Query: 321 AEQLGK 326
E+LGK
Sbjct: 310 PERLGK 315
>pdb|2EWG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2EWG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Minodronate
pdb|2I19|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2I19|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate
pdb|2OGD|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2OGD|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-527
pdb|2P1C|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|2P1C|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-210
pdb|3DYF|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYF|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461 And Isopentyl Diphosphate
pdb|3DYG|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYG|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-461
pdb|3DYH|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3DYH|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-721
pdb|3EFQ|A Chain A, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
pdb|3EFQ|B Chain B, T. Brucei Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph-714
Length = 390
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 39/186 (20%)
Query: 173 IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEV 232
+IE + L+ DD++D S RRG+ ++ V D + +S ++ +
Sbjct: 114 MIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFAD 173
Query: 233 IKLISQVIKDF-------ASGEIKQASSLFDCD-----------LELEEYLIKSY----- 269
+ ++ F A G++ +S+FD + + E+ + +Y
Sbjct: 174 RPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVK 233
Query: 270 YKTASL---------IAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 320
YKTA + S + GV L+ M EY FQ+ DD++D
Sbjct: 234 YKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEY-------FQVQDDVMDCFTP 286
Query: 321 AEQLGK 326
E+LGK
Sbjct: 287 PERLGK 292
>pdb|2QIS|A Chain A, Crystal Structure Of Human Farnesyl Pyrophosphate Synthase
T210s Mutant Bound To Risedronate
Length = 374
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 126/319 (39%), Gaps = 55/319 (17%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVF-----LVSRATAEL 157
+V A++ Q Q+ IV M E G RL+ L + +R +
Sbjct: 29 DVYAQEKQDFVQHFSQIVRVLTEDEMGHPE--IGDAIARLKEVLEYNAIGGKYNRGLTVV 86
Query: 158 VGLKELTTKHRRLAE----------IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207
V +EL ++ A+ +E++ L+ DD++D S RRGQ +Q G
Sbjct: 87 VAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVG 146
Query: 208 VAVLAGDFMFAQSSWYLANL---ENLEVIKLISQVIKDFASGEIKQASSLFDC---DLEL 261
+ + + + L L E + LI ++ EI Q L +++L
Sbjct: 147 LDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDL 206
Query: 262 EEYLIKSY-----YKTASLIAASTKGAAIF-SGVDG-----SLSKQMYEYGRNLGLSFQI 310
+ K Y YK+A AA++ +G+DG + K + E +G FQI
Sbjct: 207 VRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE----MGEFFQI 262
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIK 370
DD LD GK +D+ + V+ L++ + E +
Sbjct: 263 QDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQR----------------ATPEQYQ 305
Query: 371 LVKTSGGIEEAQELAKEKA 389
++K + G +EA+++A+ KA
Sbjct: 306 ILKENYGQKEAEKVARVKA 324
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase
(T201a Mutant) Complexed With Mg And Biphosphonate
Inhibitor
Length = 376
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 125/319 (39%), Gaps = 55/319 (17%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVF-----LVSRATAEL 157
+V A++ Q Q+ IV M E G RL+ L + +R +
Sbjct: 31 DVYAQEKQDFVQHFSQIVRVLTEDEMGHPE--IGDAIARLKEVLEYNAIGGKYNRGLTVV 88
Query: 158 VGLKELTTKHRRLAE----------IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207
V +EL ++ A+ +E++ L+ DD++D S RRGQ +Q G
Sbjct: 89 VAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVG 148
Query: 208 VAVLAGDFMFAQSSWYLANL---ENLEVIKLISQVIKDFASGEIKQASSLFDC---DLEL 261
+ + + + L L E + LI ++ EI Q L +++L
Sbjct: 149 LDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDL 208
Query: 262 EEYLIKSY-----YKTASLIAASTKGAAIF-SGVDG-----SLSKQMYEYGRNLGLSFQI 310
+ K Y YK A AA++ +G+DG + K + E +G FQI
Sbjct: 209 VRFTEKRYKSIVKYKAAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLE----MGEFFQI 264
Query: 311 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIK 370
DD LD GK +D+ + V+ L++ + E +
Sbjct: 265 QDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQR----------------ATPEQYQ 307
Query: 371 LVKTSGGIEEAQELAKEKA 389
++K + G +EA+++A+ KA
Sbjct: 308 ILKENYGQKEAEKVARVKA 326
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 288 GVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVI--FAL 345
VD + K++ + +G FQI DD LD + + GK SD+ LT P+I F L
Sbjct: 263 AVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFEL 321
Query: 346 EKEPKLREIIESEFCET-------GSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLH 397
EP +I+++ SL E K+ K E+AQ K K AI+ LH
Sbjct: 322 CSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQ---KAKILSAINELH 377
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRR----LAEIIEMIHTASLIHDDVLDESDM 193
GGK R LV L+ E V +++ + LA IE++ A L+ DD++D+ +M
Sbjct: 79 GGKNNRGILVILI----YEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGEM 134
Query: 194 RRGQETVHQLYGTRVAVLAGDFMFAQSSWY 223
RR + + L D + +S Y
Sbjct: 135 RRNKYCWYLLKDVETKNAVNDVLLLYNSIY 164
>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate
Synthase At 2.6 Angstroms Resolution
Length = 348
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 21/203 (10%)
Query: 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN---LENL 230
IE+ L+ DD++D+S RRGQ ++ G + + F+ S + + +
Sbjct: 87 IELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRP 146
Query: 231 EVIKLISQVIKDFASGEIKQASSLFDC---DLELEEYLIKSY-----YKTASLIAASTKG 282
+ L+ ++ E+ Q L ++L + + Y YKTA
Sbjct: 147 YYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVA 206
Query: 283 AAIFS-GVDGSLSKQMYEYGR----NLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 337
AA++ G+D SK+ +E + +G FQI DD LD GK +D+
Sbjct: 207 AAMYMVGID---SKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGK-VGTDIQDNKC 262
Query: 338 TAPVIFALEK-EPKLREIIESEF 359
+ V+ L++ P+ R+++E +
Sbjct: 263 SWLVVQCLQRVTPEQRQLLEDNY 285
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2O1O|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2Q58|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
pdb|2Q58|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
Length = 368
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 139 GKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQE 198
GK +R ++ L+S ++ +K + L ++E I LI DD++D RRG
Sbjct: 71 GKHIRGKILVLISSLSSAYSNIKRDSI--YLLGWVVEAIQALILIADDIMDSGKFRRGAP 128
Query: 199 TVHQLYGTRVAV 210
+ ++G A+
Sbjct: 129 CWYIVHGQSNAI 140
>pdb|1YHM|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|B Chain B, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
pdb|1YHM|C Chain C, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Disphosphate Synthase With Alendronate, Isopentenyl
Diphosphate And Mg+2
Length = 362
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 83/220 (37%), Gaps = 32/220 (14%)
Query: 138 GGKRLRPALVFLVSRATAELVGLKELTTKHRRLAE------IIEMIHTASLIHDDVLDES 191
GGK R V V+ + E TK R L + IE + L+ DD+ D S
Sbjct: 46 GGKYFRGXTVVNVAEGFLAVTQHDE-ATKERILHDACVGGWXIEFLQAHYLVEDDIXDGS 104
Query: 192 DMRRGQETVHQLYGTRVAVLAGDFMFAQS-----SW-YLANLENL-EVIKLISQVIKDFA 244
RRG+ ++ G D + +S +W Y A+ L +++ L +V A
Sbjct: 105 VXRRGKPCWYRFPGVTTQCAINDGIILKSWTQIXAWHYFADRPFLKDLLCLFQKVDYATA 164
Query: 245 SGEIKQASSLFDCD-----------LELEEYLIKSY-----YKTASLIAASTKGAAIF-S 287
G+ +S D + + E+ Y YKT +F S
Sbjct: 165 VGQXYDVTSXCDSNKLDPEVAQPXTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVXGLFVS 224
Query: 288 GVDGSLSKQMYEYGRNL-GLSFQIVDDILDFTQSAEQLGK 326
S+ + E +L G FQ+ DD+ D EQLGK
Sbjct: 225 EAAASVEXNLVERVAHLIGEYFQVQDDVXDCFTPPEQLGK 264
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 357 SEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFN 415
+++C TGS D +IKL S G Q +A K+ + + + P + +A+ D VM N
Sbjct: 86 TKYCVTGSADYSIKLWDVSNG----QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKN 140
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 83 PAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKR- 141
PA+L L+EK + +VV + T + K +G ++P+ Q+F GK+
Sbjct: 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLF----SQVFWLDGKKC 126
Query: 142 LRPAL 146
LRP L
Sbjct: 127 LRPML 131
>pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 1413
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 108 DLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPAL 146
D QT+ + + G + V++ +AE+ AGGK LRPAL
Sbjct: 1042 DGQTITRQTDELTGLSSLVVLDSAERT--AGGKDLRPAL 1078
>pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|D Chain D, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|I Chain I, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1407
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 108 DLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPAL 146
D QT+ + + G + V++ +AE+ AGGK LRPAL
Sbjct: 1042 DGQTITRQTDELTGLSSLVVLDSAERT--AGGKDLRPAL 1078
>pdb|2AUK|A Chain A, Structure Of E. Coli Rna Polymerase Beta' GG' INSERT
pdb|2AUK|B Chain B, Structure Of E. Coli Rna Polymerase Beta' GG' INSERT
pdb|2AUK|C Chain C, Structure Of E. Coli Rna Polymerase Beta' GG' INSERT
pdb|2AUK|D Chain D, Structure Of E. Coli Rna Polymerase Beta' GG' INSERT
pdb|2AUK|E Chain E, Structure Of E. Coli Rna Polymerase Beta' GG' INSERT
Length = 190
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 108 DLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPAL 146
D QT+ + + G + V++ +AE+ AGGK LRPAL
Sbjct: 103 DGQTITRQTDELTGLSSLVVLDSAERT--AGGKDLRPAL 139
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 83 PAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKR- 141
PA+L L+EK + +VV + T + K +G ++P+ Q+F GK+
Sbjct: 91 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLF----SQVFWLDGKKC 146
Query: 142 LRPAL 146
LRP L
Sbjct: 147 LRPML 151
>pdb|4IQZ|A Chain A, The Crystal Structure Of A Large Insert In Rna Polymerase
(rpoc) Subunit From E. Coli
pdb|4IQZ|B Chain B, The Crystal Structure Of A Large Insert In Rna Polymerase
(rpoc) Subunit From E. Coli
pdb|4IQZ|C Chain C, The Crystal Structure Of A Large Insert In Rna Polymerase
(rpoc) Subunit From E. Coli
pdb|4IQZ|D Chain D, The Crystal Structure Of A Large Insert In Rna Polymerase
(rpoc) Subunit From E. Coli
pdb|4IQZ|E Chain E, The Crystal Structure Of A Large Insert In Rna Polymerase
(rpoc) Subunit From E. Coli
Length = 250
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 108 DLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELV 158
D QT+ + + G + V++ +AE+ AGGK LRPAL + ++ L+
Sbjct: 131 DGQTITRQTDELTGLSSLVVLDSAERT--AGGKDLRPALKIVDAQGNDVLI 179
>pdb|1DI6|A Chain A, 1.45 A Crystal Structure Of The Molybdenumm Cofactor
Biosynthesis Protein Moga From Escherichia Coli
pdb|1DI7|A Chain A, 1.60 Angstrom Crystal Structure Of The Molybdenum Cofactor
Biosynthesis Protein Moga From Escherichia Coli
Length = 195
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 325 GKPAASDLAKGNLTAPVIFALEKE--PKLREIIESEFCETGSLDE-AIKLVKTSGGIEEA 381
G PA + LT P F LE P + IIE CE +DE + LV T+GG A
Sbjct: 24 GIPALEEWLTSALTTP--FELETRLIPDEQAIIEQTLCEL--VDEMSCHLVLTTGGTGPA 79
Query: 382 QELAKEKANLAIHN 395
+ A LA+ +
Sbjct: 80 RRDVTPDATLAVAD 93
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 229 NLEVIKLISQVIKDFASGEIKQASS 253
N+ ++KL+S+ + DF+SG+I Q S
Sbjct: 167 NMVILKLLSEEVFDFSSGQITQVKS 191
>pdb|1FKX|A Chain A, Murine Adenosine Deaminase (D296a)
Length = 349
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 185 DDVLDESDMRRGQETVHQLYGTRV-AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243
DDV+D + +G + Q +G +V ++L M Q SW L LE + + V D
Sbjct: 124 DDVVDL--VNQGLQEGEQAFGIKVRSILC--CMRHQPSWSLEVLELCKKYNQKTVVAMDL 179
Query: 244 ASGEIKQASSLFDCDLELEEYLIKS 268
A E + SSLF +E E +K+
Sbjct: 180 AGDETIEGSSLFPGHVEAYEGAVKN 204
>pdb|1FKW|A Chain A, Murine Adenosine Deaminase (D295e)
Length = 349
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 185 DDVLDESDMRRGQETVHQLYGTRV-AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243
DDV+D + +G + Q +G +V ++L M Q SW L LE + + V D
Sbjct: 124 DDVVDL--VNQGLQEGEQAFGIKVRSILC--CMRHQPSWSLEVLELCKKYNQKTVVAMDL 179
Query: 244 ASGEIKQASSLFDCDLELEEYLIKS 268
A E + SSLF +E E +K+
Sbjct: 180 AGDETIEGSSLFPGHVEAYEGAVKN 204
>pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
Length = 352
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 185 DDVLDESDMRRGQETVHQLYGTRV-AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243
DDV+D + +G + Q +G +V ++L M Q SW L LE + + V D
Sbjct: 127 DDVVDL--VNQGLQEGEQAFGIKVRSILC--CMRHQPSWSLEVLELCKKYNQKTVVAMDL 182
Query: 244 ASGEIKQASSLFDCDLELEEYLIKS 268
A E + SSLF +E E +K+
Sbjct: 183 AGDETIEGSSLFPGHVEAYEGAVKN 207
>pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD|A Chain A, A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure
Of Adenosine Deaminase With Bound 1-Deaza-Adenosine And
Zinc-Activated Water
pdb|3MVT|A Chain A, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVT|C Chain C, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVI|A Chain A, Crystal Structure Of Holo Mada At 1.6 A Resolution
pdb|3MVI|B Chain B, Crystal Structure Of Holo Mada At 1.6 A Resolution
Length = 349
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 185 DDVLDESDMRRGQETVHQLYGTRV-AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243
DDV+D + +G + Q +G +V ++L M Q SW L LE + + V D
Sbjct: 124 DDVVDL--VNQGLQEGEQAFGIKVRSILC--CMRHQPSWSLEVLELCKKYNQKTVVAMDL 179
Query: 244 ASGEIKQASSLFDCDLELEEYLIKS 268
A E + SSLF +E E +K+
Sbjct: 180 AGDETIEGSSLFPGHVEAYEGAVKN 204
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 285 IFSGVDGSLSKQMYEYGRNLGLSFQ---IVDDILDFTQSAEQLGKPAASDLAKGNLT--- 338
+ G D +++++ +Y N G+ F + D+I + KP L KG+ T
Sbjct: 320 LLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLL-LVKGHYTDGK 378
Query: 339 ------APVIFALEKEPKLREIIESEFCET 362
VIFA+ +EP+L +++ CET
Sbjct: 379 KFEEEFETVIFAVGREPQLSKVL----CET 404
>pdb|1I7G|A Chain A, Crystal Structure Of The Ligand Binding Domain From Human
Ppar-Alpha In Complex With The Agonist Az 242
Length = 287
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 143 RPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIH 184
P +FL + ++ L++L T+H +L +II+ + + +H
Sbjct: 235 HPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALH 276
>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 185 DDVLDESDMRRGQETVHQLYGTRV-AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243
DDV+D + +G + Q +G +V ++L M Q SW L LE + + V D
Sbjct: 124 DDVVDL--VNQGLQEGEQAFGIKVRSILC--CMRHQPSWSLEVLELCKKYNQKTVVAMDL 179
Query: 244 ASGEIKQASSLFDCDLELEEYLIKS 268
A E + SSLF +E E +K+
Sbjct: 180 AGDETIEGSSLFPGHVEAYEGAVKN 204
>pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
Transition-State Analog: Understanding Catalysis And
Immunodeficiency Mutations
Length = 352
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 185 DDVLDESDMRRGQETVHQLYGTRV-AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243
DDV+D + +G + Q +G +V ++L M Q SW L LE + + V D
Sbjct: 127 DDVVDL--VNQGLQEGEQAFGIKVRSILC--CMRHQPSWSLEVLELCKKYNQKTVVAMDL 182
Query: 244 ASGEIKQASSLFDCDLELEEYLIKS 268
A E + SSLF +E E +K+
Sbjct: 183 AGDETIEGSSLFPGHVEAYEGAVKN 207
>pdb|1UIO|A Chain A, Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 185 DDVLDESDMRRGQETVHQLYGTRV-AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243
DDV+D + +G + Q +G +V ++L M Q SW L LE + + V D
Sbjct: 124 DDVVDL--VNQGLQEGEQAFGIKVRSILC--CMRHQPSWSLEVLELCKKYNQKTVVAMDL 179
Query: 244 ASGEIKQASSLFDCDLELEEYLIKS 268
A E + SSLF +E E +K+
Sbjct: 180 AGDETIEGSSLFPGHVEAYEGAVKN 204
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 285 IFSGVDGSLSKQMYEYGRNLGLSFQ---IVDDILDFTQSAEQLGKPAASDLAKGNLT--- 338
+ G D +++++ +Y N G+ F + D+I + KP L KG+ T
Sbjct: 320 LLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLL-LVKGHYTDGK 378
Query: 339 ------APVIFALEKEPKLREIIESEFCET 362
VIFA+ +EP+L +++ CET
Sbjct: 379 KFEEEFETVIFAVGREPQLSKVL----CET 404
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 285 IFSGVDGSLSKQMYEYGRNLGLSFQ---IVDDILDFTQSAEQLGKPAASDLAKGNLT--- 338
+ G D +++++ +Y N G+ F + D+I + KP L KG+ T
Sbjct: 320 LLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLL-LVKGHYTDGK 378
Query: 339 ------APVIFALEKEPKLREIIESEFCET 362
VIFA+ +EP+L +++ CET
Sbjct: 379 KFEEEFETVIFAVGREPQLSKVL----CET 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,655,496
Number of Sequences: 62578
Number of extensions: 404497
Number of successful extensions: 1305
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 127
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)