Query 014706
Match_columns 420
No_of_seqs 199 out of 1581
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:44:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02857 octaprenyl-diphosphat 100.0 1.2E-88 2.6E-93 694.8 39.7 415 2-420 1-416 (416)
2 TIGR02749 prenyl_cyano solanes 100.0 4.7E-69 1E-73 537.5 37.8 321 97-420 2-322 (322)
3 PLN02890 geranyl diphosphate s 100.0 3.5E-68 7.6E-73 543.9 38.3 323 98-420 81-422 (422)
4 CHL00151 preA prenyl transfera 100.0 1.6E-67 3.4E-72 527.0 36.3 318 99-419 5-322 (323)
5 TIGR02748 GerC3_HepT heptapren 100.0 2.9E-67 6.3E-72 524.2 37.2 315 99-420 3-319 (319)
6 PRK10888 octaprenyl diphosphat 100.0 3.8E-67 8.3E-72 523.7 37.6 317 97-419 2-322 (323)
7 COG0142 IspA Geranylgeranyl py 100.0 3.4E-66 7.4E-71 516.9 36.1 316 101-420 3-322 (322)
8 KOG0776 Geranylgeranyl pyropho 100.0 1E-60 2.2E-65 475.4 30.3 314 97-418 63-384 (384)
9 PRK10581 geranyltranstransfera 100.0 3.5E-59 7.5E-64 461.7 31.3 277 103-419 5-298 (299)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 7.6E-55 1.6E-59 422.9 29.3 254 124-418 3-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 7.8E-55 1.7E-59 423.1 21.1 251 128-385 2-259 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 3.7E-41 8.1E-46 320.8 27.0 233 142-418 1-236 (236)
13 KOG0711 Polyprenyl synthetase 100.0 9.2E-36 2E-40 287.4 22.2 320 94-419 8-346 (347)
14 KOG0777 Geranylgeranyl pyropho 100.0 1E-35 2.2E-40 275.5 20.6 276 124-409 20-299 (322)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 2.1E-22 4.5E-27 187.3 28.9 223 168-414 13-240 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.5 0.0023 4.9E-08 60.7 13.4 105 164-276 32-137 (212)
17 TIGR01559 squal_synth farnesyl 97.1 0.022 4.7E-07 57.9 15.9 151 230-403 100-250 (336)
18 PF00494 SQS_PSY: Squalene/phy 96.5 0.14 2.9E-06 49.8 16.5 145 235-407 88-233 (267)
19 PLN02632 phytoene synthase 96.0 0.2 4.4E-06 50.8 15.1 137 239-402 141-279 (334)
20 TIGR03464 HpnC squalene syntha 95.8 0.52 1.1E-05 46.0 16.5 133 239-402 87-219 (266)
21 cd00683 Trans_IPPS_HH Trans-Is 95.5 1.4 3.1E-05 42.8 18.3 134 239-402 94-227 (265)
22 TIGR03465 HpnD squalene syntha 94.4 0.68 1.5E-05 45.2 12.7 133 239-402 86-218 (266)
23 cd00687 Terpene_cyclase_nonpla 92.9 9.3 0.0002 37.5 17.9 89 230-320 128-221 (303)
24 cd00868 Terpene_cyclase_C1 Ter 85.8 34 0.00074 32.8 18.1 88 231-318 122-213 (284)
25 COG1562 ERG9 Phytoene/squalene 75.7 41 0.00089 33.5 11.8 138 236-403 101-238 (288)
26 PRK10581 geranyltranstransfera 63.8 53 0.0011 32.8 9.7 62 167-228 205-278 (299)
27 TIGR01474 ubiA_proteo 4-hydrox 59.3 1.8E+02 0.004 28.5 14.4 56 170-225 45-105 (281)
28 PF06783 UPF0239: Uncharacteri 58.5 13 0.00028 30.2 3.4 29 290-318 14-42 (85)
29 PRK07566 bacteriochlorophyll/c 57.5 1.9E+02 0.0042 28.9 12.6 50 173-222 73-125 (314)
30 PRK09573 (S)-2,3-di-O-geranylg 55.6 2.1E+02 0.0045 28.0 15.8 55 170-224 42-99 (279)
31 PF01040 UbiA: UbiA prenyltran 51.2 2.1E+02 0.0046 26.7 18.1 147 175-347 33-190 (257)
32 PRK12884 ubiA prenyltransferas 50.1 2.5E+02 0.0054 27.2 18.1 156 169-347 41-199 (279)
33 PRK12872 ubiA prenyltransferas 49.2 2.6E+02 0.0056 27.2 13.1 35 303-348 172-206 (285)
34 PRK12882 ubiA prenyltransferas 45.6 3E+02 0.0064 26.8 17.5 56 170-225 43-101 (276)
35 cd00684 Terpene_cyclase_plant_ 37.3 5.7E+02 0.012 27.7 14.0 105 229-346 354-465 (542)
36 TIGR02748 GerC3_HepT heptapren 36.8 4E+02 0.0086 26.7 11.1 50 285-346 56-105 (319)
37 CHL00151 preA prenyl transfera 36.0 2.4E+02 0.0051 28.4 9.3 25 166-190 196-220 (323)
38 PLN02857 octaprenyl-diphosphat 35.4 2.7E+02 0.0058 29.3 9.8 24 167-190 290-313 (416)
39 PF03936 Terpene_synth_C: Terp 31.2 4.5E+02 0.0097 24.7 11.6 86 232-318 138-228 (270)
40 PRK12871 ubiA prenyltransferas 30.9 5.4E+02 0.012 25.6 16.2 32 305-347 188-219 (297)
41 KOG2802 Membrane protein HUEL 29.1 1.3E+02 0.0028 31.3 5.9 43 272-319 371-415 (503)
42 TIGR02056 ChlG chlorophyll syn 28.8 5.9E+02 0.013 25.3 12.8 50 172-221 61-113 (306)
43 PRK13591 ubiA prenyltransferas 28.6 5.5E+02 0.012 25.9 10.4 32 168-199 61-92 (307)
44 PF00348 polyprenyl_synt: Poly 27.2 3.1E+02 0.0068 26.4 8.3 54 281-346 22-75 (260)
45 PRK12871 ubiA prenyltransferas 26.3 4.1E+02 0.009 26.4 9.1 80 260-342 4-99 (297)
46 PRK13105 ubiA prenyltransferas 24.7 1.6E+02 0.0034 29.3 5.7 64 273-347 140-204 (282)
47 PRK12884 ubiA prenyltransferas 24.3 5.3E+02 0.012 24.9 9.4 81 260-343 3-85 (279)
48 cd00685 Trans_IPPS_HT Trans-Is 23.1 3.3E+02 0.0072 26.1 7.6 46 287-344 33-79 (259)
49 PF06304 DUF1048: Protein of u 22.6 52 0.0011 27.8 1.6 33 295-327 29-66 (103)
50 PF10163 EnY2: Transcription f 22.2 3.5E+02 0.0076 21.7 6.3 48 368-415 23-85 (86)
51 PRK12878 ubiA 4-hydroxybenzoat 21.5 4E+02 0.0088 26.7 8.0 79 259-341 28-120 (314)
52 PRK13387 1,4-dihydroxy-2-napht 20.8 2.8E+02 0.006 27.9 6.7 61 260-320 2-67 (317)
53 PRK12878 ubiA 4-hydroxybenzoat 20.8 8.5E+02 0.019 24.3 11.7 55 171-225 78-137 (314)
54 TIGR02749 prenyl_cyano solanes 20.5 8.5E+02 0.019 24.4 10.1 41 294-346 69-109 (322)
55 PRK12883 ubiA prenyltransferas 20.4 7.8E+02 0.017 23.8 9.7 81 260-343 2-85 (277)
No 1
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=1.2e-88 Score=694.81 Aligned_cols=415 Identities=77% Similarity=1.126 Sum_probs=389.5
Q ss_pred CccccccccccccccchhcccCCCCcccchhhhhhHhhhhcccccccccccccccccccccceeeccCCCCccccc-ccC
Q 014706 2 MSMTSHNLDFGRSVLDLVACGCSSSASIHRSSVRKIAMTGSRKSNRDCGARRLVCCRQNLARCRVYSTKTPETLLN-VGQ 80 (420)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (420)
|+|+|+|+|||++ +++|||||++.++|+.+|++++.+++.|+|+|+++ .++|||++++|+++++.+....++ ..+
T Consensus 1 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (416)
T PLN02857 1 MSMSCRNIDLGTS---LVACGCSSNASSRRRVVRNGATPVCKSCSRSYASS-LVTSRRDIGRCRVVSPSPETSLVNGIGQ 76 (416)
T ss_pred CCccccCCCCCcc---cccCCCccccccccccccccccccccccCcccccc-cchhccCcceeeccCCCCcccccCcccc
Confidence 8999999999999 66999999999999999999999999999999996 699999999999998855555666 466
Q ss_pred CCcccccccccccCcccHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCC
Q 014706 81 IPPAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGL 160 (420)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~ 160 (420)
.+.....++.....++++.++++.+.++++.|++.|.+.+....|.+.++++|++..||||+||+|++++++++++..|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKriRP~Lvll~a~a~g~~~g~ 156 (416)
T PLN02857 77 GPTVALDLKAESKEPISLSELFEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGL 156 (416)
T ss_pred ccHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCCCccHhHHHHHHHHHHhccccCC
Confidence 66666766777778899999999999999999999999999999999999999999999999999999999987765554
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 014706 161 KELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVI 240 (420)
Q Consensus 161 ~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~ 240 (420)
+...++.+.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+|||||++|++.++++.++++++++++++
T Consensus 157 ~~~~~~~~~lAaaiEliH~ASLIHDDI~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~ 236 (416)
T PLN02857 157 KELTTEHRRLAEITEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVI 236 (416)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHCccccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 43456788999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccc
Q 014706 241 KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 320 (420)
Q Consensus 241 ~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~ 320 (420)
.++++||+.|..+..+.+.++++|++++++|||+||+.+|++||+++|++++..+.+++||+++|+||||+||++||+++
T Consensus 237 ~~l~~Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~ 316 (416)
T PLN02857 237 KDFASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQS 316 (416)
T ss_pred HHHHhhHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999998888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCC
Q 014706 321 AEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 400 (420)
Q Consensus 321 ~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 400 (420)
++.+|||.|+||++||+|+|++++++.+|+++.++.+.+.+++++++++++|+++|+++++++++++|.++|++.|+.||
T Consensus 317 ~~~~GK~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp 396 (416)
T PLN02857 317 TEQLGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLP 396 (416)
T ss_pred HHHhCCCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999989999999888888889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCC
Q 014706 401 RSPFRVALEDMVMFNLERFV 420 (420)
Q Consensus 401 ~~~~~~~L~~l~~~~~~R~~ 420 (420)
+++.++.|..|++|+++|++
T Consensus 397 ~~~~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 397 RGAFRSSLEDMVDYNLERIY 416 (416)
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999974
No 2
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=4.7e-69 Score=537.47 Aligned_cols=321 Identities=67% Similarity=1.020 Sum_probs=301.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHH
Q 014706 97 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEM 176 (420)
Q Consensus 97 ~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEl 176 (420)
+..+++..+..+++.|++.+.+.+.+..|.+.++.+|++..||||+||.|+++++++++. .....+..+++|+++||
T Consensus 2 ~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~ll~~~~~~~---~~~~~~~~~~~A~avEl 78 (322)
T TIGR02749 2 SATSLFAPVEDDLYLLTDNLKSLVGARHPILYAAAEHLFSAGGKRLRPAIVLLVSRATAE---QQELTPRHRRLAEITEM 78 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC---CccccHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999887542 11223677899999999
Q ss_pred HHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccC
Q 014706 177 IHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD 256 (420)
Q Consensus 177 iH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~ 256 (420)
||+||||||||||+|++|||+||+|.+||++.||++||||+++|++.++...+.++++.+++++..++.||+.|.....+
T Consensus 79 iH~asLiHDDiiD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~ 158 (322)
T TIGR02749 79 IHTASLVHDDVIDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFD 158 (322)
T ss_pred HHHHHHHHcccccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999877777
Q ss_pred CCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCc
Q 014706 257 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGN 336 (420)
Q Consensus 257 ~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk 336 (420)
.++++++|++++++|||+||+++|++|++++|++++.++.+++||+++|+||||+||++||+++++.+|||.|+||++||
T Consensus 159 ~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk 238 (322)
T TIGR02749 159 SDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGN 238 (322)
T ss_pred CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014706 337 LTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 416 (420)
Q Consensus 337 ~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 416 (420)
+|+|++++++..|++..++.+...++++++++.++|.++|+++++++++++|.++|++.|+.+|+++.++.|..|+++++
T Consensus 239 ~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 318 (322)
T TIGR02749 239 LTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSPPREALKELVHFVL 318 (322)
T ss_pred chHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999998888888998887788899999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014706 417 ERFV 420 (420)
Q Consensus 417 ~R~~ 420 (420)
+|++
T Consensus 319 ~R~~ 322 (322)
T TIGR02749 319 SRLY 322 (322)
T ss_pred hcCC
Confidence 9986
No 3
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=3.5e-68 Score=543.95 Aligned_cols=323 Identities=41% Similarity=0.670 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCC--CCchHHHHHHHHHHHHhhhhCCc-----------ccc
Q 014706 98 LANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAG--GKRLRPALVFLVSRATAELVGLK-----------ELT 164 (420)
Q Consensus 98 ~~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~g--GKrlRp~Lvll~a~a~~~~~g~~-----------~~~ 164 (420)
..+++..+.++++.|++.|.+.+.+..|.+.++++|++..| |||+||+|+++++++++...+.. +..
T Consensus 81 ~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~~ 160 (422)
T PLN02890 81 QLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELR 160 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccchh
Confidence 45678899999999999999999999999999999999888 99999999999998764210000 012
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q 014706 165 TKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFA 244 (420)
Q Consensus 165 ~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~ 244 (420)
++++.+|+++||||+||||||||||++++|||+||+|.+||++.||++||||+++++..++...+.+++..+++++..++
T Consensus 161 ~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~~~l~ 240 (422)
T PLN02890 161 TRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVEHLV 240 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhh
Q 014706 245 SGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 324 (420)
Q Consensus 245 ~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~ 324 (420)
+||+.|.....+..+++++|++++++|||+||+.+|++||+++|++++..+.+++||+++|+||||+||++||+++++.+
T Consensus 241 ~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~ 320 (422)
T PLN02890 241 TGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSASL 320 (422)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhh
Confidence 99999988777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCCh-
Q 014706 325 GKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP- 403 (420)
Q Consensus 325 GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~- 403 (420)
|||.|+||++||+|+|++++++..++++.++.....++++++++.++|.++|++++|++++++|.++|++.|+.||+++
T Consensus 321 GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~s~~ 400 (422)
T PLN02890 321 GKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPETDD 400 (422)
T ss_pred CCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999998888888888877777889999999999999999999999999999999999999987
Q ss_pred -----HHHHHHHHHHHHhccCC
Q 014706 404 -----FRVALEDMVMFNLERFV 420 (420)
Q Consensus 404 -----~~~~L~~l~~~~~~R~~ 420 (420)
.++.|..|++++++|+.
T Consensus 401 ~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 401 EDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred ccchHHHHHHHHHHHHHHhccC
Confidence 79999999999999974
No 4
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1.6e-67 Score=526.97 Aligned_cols=318 Identities=53% Similarity=0.876 Sum_probs=296.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014706 99 ANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 178 (420)
Q Consensus 99 ~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH 178 (420)
.+++..+.++++.|++.|.+.+....|.+.++++|++..||||+||.|+++++++++. ......+.+.+|+++|++|
T Consensus 5 ~~~~~~~~~~l~~i~~~l~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~ll~~~~~~~---~~~~~~~~~~~A~aiEllH 81 (323)
T CHL00151 5 SNLLTPIEEELLILEDNLKKLIGSGHPILYAAAKHLFSAGGKRIRPAIVLLVAKATGG---NMEIKTSQQRLAEITEIIH 81 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcCCccHHHHHHHHHHHHcCC---CccccHHHHHHHHHHHHHH
Confidence 4667788999999999999999988899999999999999999999999998887542 1112356778999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCC
Q 014706 179 TASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCD 258 (420)
Q Consensus 179 ~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~ 258 (420)
+||||||||||+|++|||+||+|.+||++.||++||||++++++.++...++.+++.+++++..+++||+.|.....+..
T Consensus 82 ~asLiHDDi~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 161 (323)
T CHL00151 82 TASLVHDDVIDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAEGEIRQGLVQFDTT 161 (323)
T ss_pred HHHHHHcccccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999877666667
Q ss_pred CCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCccc
Q 014706 259 LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 338 (420)
Q Consensus 259 ~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~T 338 (420)
.+.++|++++++|||+||++||.+|++++|++++..+.+++||+++|+||||+||++||+++++.+|||.|+||++||+|
T Consensus 162 ~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~T 241 (323)
T CHL00151 162 LSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLT 241 (323)
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc
Q 014706 339 APVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418 (420)
Q Consensus 339 lP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R 418 (420)
||++++++..+++.+.+.....++.+++++.+++.++|+++++++++++|.++|++.|+.||+++.++.|..+++++++|
T Consensus 242 lp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R 321 (323)
T CHL00151 242 APVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSSAKDSLIEIANFIINR 321 (323)
T ss_pred HHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 99999999888888888877777889999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 014706 419 F 419 (420)
Q Consensus 419 ~ 419 (420)
+
T Consensus 322 ~ 322 (323)
T CHL00151 322 L 322 (323)
T ss_pred c
Confidence 6
No 5
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=2.9e-67 Score=524.17 Aligned_cols=315 Identities=35% Similarity=0.588 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014706 99 ANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 178 (420)
Q Consensus 99 ~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH 178 (420)
.++++.+.++++.|++.+.+.+....|.+.+++.|++..||||+||.|++++++++ |.. .+..+++|+++||||
T Consensus 3 ~~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKriRp~L~ll~~~~~----~~~--~~~~~~~A~aiEliH 76 (319)
T TIGR02748 3 ADIYSFLQKDIDSIEKELEKAVQAEHPVLSEASLHLLEAGGKRIRPVFVLLAGKFG----DYD--LDAIKHVAVALELIH 76 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhcCCchHHHHHHHHHHHHc----CCC--HHHHHHHHHHHHHHH
Confidence 45678899999999999999998888899999999999999999999999987753 322 367889999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCC
Q 014706 179 TASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCD 258 (420)
Q Consensus 179 ~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~ 258 (420)
+||||||||+|+|++|||+||+|.+||+++||++||||++++++.+++++++++++.+++++..+++||+.|.....+..
T Consensus 77 ~asLiHDDI~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~ 156 (319)
T TIGR02748 77 MASLVHDDVIDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCRGEIEQIKDKYNFD 156 (319)
T ss_pred HHHHHhccccCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999987766777
Q ss_pred CCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCccc
Q 014706 259 LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 338 (420)
Q Consensus 259 ~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~T 338 (420)
+++++|++++++|||+||+++|.+|++++|++++.++.+++||+++|+||||+||++||+++++.+|||.++||++||+|
T Consensus 157 ~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~T 236 (319)
T TIGR02748 157 QNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVT 236 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhChHHHHHHHhhcC--CcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014706 339 APVIFALEKEPKLREIIESEFC--ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 416 (420)
Q Consensus 339 lP~l~ale~~~~l~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 416 (420)
+|++++++..+ .+..+...+. +++++++++++++++|++++++.++++|.++|++.|+.||+++.++.|..++++++
T Consensus 237 lp~l~al~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 315 (319)
T TIGR02748 237 LPVLYAMEDPF-LKKRIEQVLEETTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGRAKKPLQEIAKYIG 315 (319)
T ss_pred HHHHHHhcCcc-hhHHHHHHHcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999998533 4444443332 45788999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014706 417 ERFV 420 (420)
Q Consensus 417 ~R~~ 420 (420)
+|+.
T Consensus 316 ~R~~ 319 (319)
T TIGR02748 316 KRKY 319 (319)
T ss_pred hccC
Confidence 9974
No 6
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=3.8e-67 Score=523.71 Aligned_cols=317 Identities=33% Similarity=0.585 Sum_probs=292.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHH
Q 014706 97 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEM 176 (420)
Q Consensus 97 ~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEl 176 (420)
++.+++..+..+++.|++.|.+.+.+..|.+.++.+|.+..||||+||.|++++++++ |.. .+..+++|+++||
T Consensus 2 ~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~~GKrlRp~l~ll~~~~~----g~~--~~~~~~~A~avEl 75 (323)
T PRK10888 2 NLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIISGGGKRIRPMIAVLAARAV----GYQ--GNAHVTIAALIEF 75 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhCCCchHHHHHHHHHHHHc----CCC--hHHHHHHHHHHHH
Confidence 4556788899999999999999998888999999999999999999999999988865 332 3567899999999
Q ss_pred HHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccC
Q 014706 177 IHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD 256 (420)
Q Consensus 177 iH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~ 256 (420)
||+||||||||||++++|||+||+|.+||+++||++||||++++++.++..++.+++..+++++..+++||+.|.....+
T Consensus 76 lH~asLiHDDI~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~ 155 (323)
T PRK10888 76 IHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVND 155 (323)
T ss_pred HHHHHHHHcccccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999876666
Q ss_pred CCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCc
Q 014706 257 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGN 336 (420)
Q Consensus 257 ~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk 336 (420)
.++++++|++++++|||+||+++|.+|++++|++++.++.+++||+++|+||||+||++||+++++.+|||.|+||++||
T Consensus 156 ~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk 235 (323)
T PRK10888 156 PDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGK 235 (323)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhh-ChHHHHHHHhhcCC---cchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHH
Q 014706 337 LTAPVIFALEK-EPKLREIIESEFCE---TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMV 412 (420)
Q Consensus 337 ~TlP~l~ale~-~~~l~~~l~~~~~~---~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~ 412 (420)
+|||++++++. +++.+..+...+.. +++++++.+++.++|+++++++.+++|.++|++.|+.+|+++.++.|..++
T Consensus 236 ~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~ 315 (323)
T PRK10888 236 PTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLA 315 (323)
T ss_pred chHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999987 55566655544432 356889999999999999999999999999999999999999999999999
Q ss_pred HHHhccC
Q 014706 413 MFNLERF 419 (420)
Q Consensus 413 ~~~~~R~ 419 (420)
+++++|+
T Consensus 316 ~~~~~R~ 322 (323)
T PRK10888 316 HIAVQRD 322 (323)
T ss_pred HHHHhCc
Confidence 9999996
No 7
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.4e-66 Score=516.86 Aligned_cols=316 Identities=39% Similarity=0.580 Sum_probs=287.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-CCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014706 101 IFEVVAEDLQTLNQNLKSIVG-AENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 179 (420)
Q Consensus 101 l~~~l~~~l~~v~~~l~~~~~-~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~ 179 (420)
+...+..+++.|++.|.+.++ +.++.+.+++.|.+..||||+||+++++++++++ .......+++.++|++|||||+
T Consensus 3 ~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~~--~~~~~~~~~~~~~aaavEliH~ 80 (322)
T COG0142 3 LLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALG--IDLETGGNDALDLAAAIELIHT 80 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCccHhHHHHHHHHHHcC--CCcccchhhHHHHHHHHHHHHH
Confidence 556788889999999999998 7788999999999999999999999999988765 1111113478999999999999
Q ss_pred HHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhHHHHHhhhccCC
Q 014706 180 ASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN--LEVIKLISQVIKDFASGEIKQASSLFDC 257 (420)
Q Consensus 180 AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~--~~v~~~ls~~~~~l~~Ge~~q~~~~~~~ 257 (420)
+|||||||||+|++|||+||+|.+||+..|||+||+|++.||+++++..+ +.+++.++.++..++.||..|+....+.
T Consensus 81 ~SLiHDDvmD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~ 160 (322)
T COG0142 81 ASLIHDDLMDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLCGGQALDLAFENKP 160 (322)
T ss_pred HHHHHhhcccCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999887 8899999999999999999998776555
Q ss_pred CCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcc
Q 014706 258 DLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 337 (420)
Q Consensus 258 ~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~ 337 (420)
+++++|++|+++|||.||+++|++|++++|++++..+.++.||+++|+||||+||++|++++++++|||+|+||++||.
T Consensus 161 -~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~ 239 (322)
T COG0142 161 -VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKP 239 (322)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhC-hHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014706 338 TAPVIFALEKE-PKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 416 (420)
Q Consensus 338 TlP~l~ale~~-~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 416 (420)
|||++++++.. ++.+ .+........+++++++++.++|+++++...++.|.++|++.|+.+|+++.++.|..+++|++
T Consensus 240 T~p~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~~~~~L~~la~~i~ 318 (322)
T COG0142 240 TLPVLLALEKANEDQK-LLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSEAKEALLELADFII 318 (322)
T ss_pred hHHHHHHHHcCchhhH-HHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 99999999984 3344 444433333399999999999999999999999999999999999998899999999999999
Q ss_pred ccCC
Q 014706 417 ERFV 420 (420)
Q Consensus 417 ~R~~ 420 (420)
+|+.
T Consensus 319 ~R~~ 322 (322)
T COG0142 319 KRKY 322 (322)
T ss_pred hccC
Confidence 9963
No 8
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-60 Score=475.44 Aligned_cols=314 Identities=45% Similarity=0.637 Sum_probs=290.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCC-C-hHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHH
Q 014706 97 SLANIFEVVAEDLQTLNQNLKSIVGAE-N-PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEII 174 (420)
Q Consensus 97 ~~~~l~~~l~~~l~~v~~~l~~~~~~~-~-p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaav 174 (420)
...+++..+..+++.+++.+..+++.. + +.+....+|.+..+||++||.++++.+++.+. + ....++++|+++
T Consensus 63 ~~~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~gKr~rP~l~~~~~e~~~~---g--~~~~q~~~A~i~ 137 (384)
T KOG0776|consen 63 LLFDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAGGKRVRPLLCLAACELVGS---G--DESSQRSLAEIV 137 (384)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhcccccCchhhhhHHHhccc---c--ccHHHHHHHHHH
Confidence 345667778888999999999998876 4 45667777999999999999999987776542 2 346789999999
Q ss_pred HHHHHHHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhh
Q 014706 175 EMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQAS 252 (420)
Q Consensus 175 EliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~ 252 (420)
||||++||||||| ||++++|||+||.|..||+++|||+||||+++|++.++.+.++.+++++++++.+++.|++.|..
T Consensus 138 EMIHtaSLIHDDv~~mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI~dLv~ge~~~~~ 217 (384)
T KOG0776|consen 138 EMIHTASLIHDDVPCMDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASAIADLVRGEFTQGL 217 (384)
T ss_pred HHHHHHHHHhcCcccccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hc---cCCC-CCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCC
Q 014706 253 SL---FDCD-LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPA 328 (420)
Q Consensus 253 ~~---~~~~-~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~ 328 (420)
.. .+.+ ..+++|..+..+|||+|++.+|++|++++|.++++++.+++||++||++||+.||++||+...+.+||+.
T Consensus 218 ~~~~~~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~a 297 (384)
T KOG0776|consen 218 VAGEGLDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTA 297 (384)
T ss_pred ccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcch
Confidence 65 3444 4899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHH
Q 014706 329 ASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVAL 408 (420)
Q Consensus 329 g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L 408 (420)
|.|+..|+.|+|+++++++.|++++.+.+.+.++.+.++..+.+. ++..|..++++|.++|++.|+.||++++|++|
T Consensus 298 g~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~l~~~p~s~ar~aL 374 (384)
T KOG0776|consen 298 GKDLKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVP---GVALAKYLARRHNNKALEALQSLPRSEARSAL 374 (384)
T ss_pred hhhhhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 999999999999999999999999999999999999999888888 89999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 014706 409 EDMVMFNLER 418 (420)
Q Consensus 409 ~~l~~~~~~R 418 (420)
+.|+.++++|
T Consensus 375 ~~l~~~~~~r 384 (384)
T KOG0776|consen 375 ENLVLAVLTR 384 (384)
T ss_pred HHHHHHHhcC
Confidence 9999999887
No 9
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=3.5e-59 Score=461.71 Aligned_cols=277 Identities=29% Similarity=0.412 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHHHHHhhCC---CChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014706 103 EVVAEDLQTLNQNLKSIVGA---ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 179 (420)
Q Consensus 103 ~~l~~~l~~v~~~l~~~~~~---~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~ 179 (420)
..+...++.|++.|.+.+.. .++.+.+++.|++..||||+||+|++++++++ |.+ .+...++|+++||||+
T Consensus 5 ~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~----g~~--~~~~~~~A~avEliH~ 78 (299)
T PRK10581 5 QQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQMF----GVS--TNTLDAPAAAVECIHA 78 (299)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcCcccHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHHH
Confidence 34556677788888888764 25678999999999999999999999987764 332 2567889999999999
Q ss_pred HHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc--------HHHHHHHHHH--HHHHHhHH
Q 014706 180 ASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN--------LEVIKLISQV--IKDFASGE 247 (420)
Q Consensus 180 AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~--------~~v~~~ls~~--~~~l~~Ge 247 (420)
|||||||| ||+|++|||+||+|.+||++.|||+||||++.++++++.... .++++.++++ +..++.||
T Consensus 79 aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ 158 (299)
T PRK10581 79 YSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQ 158 (299)
T ss_pred HHHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhh
Confidence 99999999 999999999999999999999999999999999999987532 1234444443 45689999
Q ss_pred HHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCC
Q 014706 248 IKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDG-SLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGK 326 (420)
Q Consensus 248 ~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~-~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK 326 (420)
+.|..... ..++.++|++|+++|||+||+++|.+|++++|.++ +.++.+++||+++|+||||+||++|++++++.+||
T Consensus 159 ~ld~~~~~-~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK 237 (299)
T PRK10581 159 ALDLEAEG-KQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGK 237 (299)
T ss_pred HHHHhccC-CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCC
Confidence 99876543 36789999999999999999999999999999874 57899999999999999999999999999999999
Q ss_pred CCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChH-H
Q 014706 327 PAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPF-R 405 (420)
Q Consensus 327 ~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~-~ 405 (420)
|.|+|+++||+|||+++++ +++++.+++|.++|++.|+.+|+++. +
T Consensus 238 ~~g~Dl~~gk~T~p~l~~~---------------------------------e~a~~~a~~~~~~A~~~l~~l~~~~~~~ 284 (299)
T PRK10581 238 RQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDDARQSLDQLAAQSLDT 284 (299)
T ss_pred CcchhhhcCCCCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhCcCCchhH
Confidence 9999999999999999975 36888999999999999999998766 7
Q ss_pred HHHHHHHHHHhccC
Q 014706 406 VALEDMVMFNLERF 419 (420)
Q Consensus 406 ~~L~~l~~~~~~R~ 419 (420)
+.|..+++|+++|+
T Consensus 285 ~~L~~l~~~~~~R~ 298 (299)
T PRK10581 285 SALEALANYIIQRD 298 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999996
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=7.6e-55 Score=422.92 Aligned_cols=254 Identities=45% Similarity=0.673 Sum_probs=236.0
Q ss_pred ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhh
Q 014706 124 NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL 203 (420)
Q Consensus 124 ~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~ 203 (420)
.+.+.++.+|++..+||++||.|+++++++++ ... .+....+|+++|++|+|+||||||+|+|++|||+||+|.+
T Consensus 3 ~~~l~~~~~~~~~~~GK~~Rp~l~~~~~~~~g----~~~-~~~~~~la~aiEllh~asLIhDDI~D~s~~RRG~p~~~~~ 77 (259)
T cd00685 3 VELLREALRYLLLAGGKRLRPLLVLLAARALG----GPE-LEAALRLAAAIELLHTASLVHDDVMDNSDLRRGKPTVHKV 77 (259)
T ss_pred chHHHHHHHHHHHcCCccHhHHHHHHHHHHhC----CCc-hHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCcHHHH
Confidence 45688899999999999999999999887753 321 2678899999999999999999999999999999999999
Q ss_pred cChHHHHHHhHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHH
Q 014706 204 YGTRVAVLAGDFMFAQSSWYLANLEN---LEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAAST 280 (420)
Q Consensus 204 ~G~~~Ail~GD~Ll~~a~~~l~~l~~---~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~ 280 (420)
||+..|||+||+|++.+++.++...+ .++++.+++.+..++.||+.|.....+..+++++|++|+.+|||+||+.+|
T Consensus 78 ~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KT~~l~~~~~ 157 (259)
T cd00685 78 FGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAAAP 157 (259)
T ss_pred hCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999998876 789999999999999999999876655578999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcC
Q 014706 281 KGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFC 360 (420)
Q Consensus 281 ~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~ 360 (420)
.+|++++|++++.++.+++||+++|++|||+||++|++++++.+||+.++||++||+|||+++++
T Consensus 158 ~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l--------------- 222 (259)
T cd00685 158 LLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL--------------- 222 (259)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc
Q 014706 361 ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418 (420)
Q Consensus 361 ~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R 418 (420)
++.++.|.++|+..|+.+|.+..++.|..+++++++|
T Consensus 223 ---------------------~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 ---------------------RELAREYEEKALEALKALPESPAREALRALADFILER 259 (259)
T ss_pred ---------------------HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcC
Confidence 6788999999999999999888889999999999987
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=7.8e-55 Score=423.13 Aligned_cols=251 Identities=39% Similarity=0.627 Sum_probs=223.6
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChH
Q 014706 128 MSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 207 (420)
Q Consensus 128 ~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~ 207 (420)
.+++.|++..||||+||.|+++++++++ . ..+.+.++|+++||||+||||||||+|+|++|||+||+|.+||+.
T Consensus 2 ~~~~~~~~~~~GK~~Rp~l~~~~~~~~~----~--~~~~~~~~a~avEliH~asLIhDDI~D~s~~RRG~pt~~~~~G~~ 75 (260)
T PF00348_consen 2 LEPARYYILRGGKRIRPLLVLLAAEALG----G--DPEKAIPLAAAVELIHAASLIHDDIIDNSDLRRGKPTVHKKFGNA 75 (260)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHHHHH
T ss_pred hHHHHHHhhCCCccHHHHHHHHHHHHhC----C--CHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcccccccccc
Confidence 3678889999999999999999887654 2 357889999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHHhHHHHHhhhccCC--CCCHHHHHHHHhhccHHHHHHHHH
Q 014706 208 VAVLAGDFMFAQSSWYLANLE----NLEVIKLISQVIKDFASGEIKQASSLFDC--DLELEEYLIKSYYKTASLIAASTK 281 (420)
Q Consensus 208 ~Ail~GD~Ll~~a~~~l~~l~----~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~--~~t~~~Yl~~i~~KTa~L~~~a~~ 281 (420)
.|||+||+|+++|+..++++. ...+..++......++.|+..|..+.... ++++++|++|+++|||+||+++|+
T Consensus 76 ~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~ 155 (260)
T PF00348_consen 76 IAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQ 155 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHH
T ss_pred chhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHH
Confidence 999999999999999999887 34566677777777888888888776655 889999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhC-hHHHHHHHhhcC
Q 014706 282 GAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKE-PKLREIIESEFC 360 (420)
Q Consensus 282 ~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~-~~l~~~l~~~~~ 360 (420)
+|++++|++++.++.+++||+++|+||||+||++|++++++.+||+.|+||++||+|||+++++++. ++++.++....
T Consensus 156 ~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~~~l~~~~- 234 (260)
T PF00348_consen 156 LGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELRELLQEAY- 234 (260)
T ss_dssp HHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 45666665544
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHH
Q 014706 361 ETGSLDEAIKLVKTSGGIEEAQELA 385 (420)
Q Consensus 361 ~~~~~~~i~~li~~~g~i~~a~~~a 385 (420)
...+.+++.+.+..++.++++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 235 GKEDSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhc
Confidence 3446778888888888899888775
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=3.7e-41 Score=320.85 Aligned_cols=233 Identities=40% Similarity=0.588 Sum_probs=208.7
Q ss_pred hHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhh-cChHHHHHHhHHHHHHH
Q 014706 142 LRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL-YGTRVAVLAGDFMFAQS 220 (420)
Q Consensus 142 lRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~-~G~~~Ail~GD~Ll~~a 220 (420)
+||.+++++++++ |.. .+....+++++|+||++++|||||+|++..|||+|++|.+ ||+..|+++||+++..+
T Consensus 1 ~r~~~~~~~~~~~----~~~--~~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~ai~~gd~l~~~a 74 (236)
T cd00867 1 SRPLLVLLLARAL----GGD--LEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALAILAGDYLLARA 74 (236)
T ss_pred CcHHHHHHHHHHc----CCC--HHHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHHHHHHHHHHHHH
Confidence 5899999887765 333 4678899999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 014706 221 SWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEY 300 (420)
Q Consensus 221 ~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~ 300 (420)
+..+.+....++.+++.+.+..+++||..|+....+...++++|.+++++|||.+|+.+|..++++++.+++..+.+.+|
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (236)
T cd00867 75 FQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDY 154 (236)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 99999887788899999999999999999876655457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHH
Q 014706 301 GRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEE 380 (420)
Q Consensus 301 G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~ 380 (420)
|.++|+||||.||++|+++|.+.+|| .++||++||+|||++++
T Consensus 155 ~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~------------------------------------ 197 (236)
T cd00867 155 GRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA------------------------------------ 197 (236)
T ss_pred HHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH------------------------------------
Confidence 99999999999999999999999999 99999999999999997
Q ss_pred HHHHHHHHHHHHHHHhccCCCCh--HHHHHHHHHHHHhcc
Q 014706 381 AQELAKEKANLAIHNLHCLPRSP--FRVALEDMVMFNLER 418 (420)
Q Consensus 381 a~~~a~~~~~~A~~~L~~lp~~~--~~~~L~~l~~~~~~R 418 (420)
.+.+.++.+++.+.+..+++.. .+..+..++.++.+|
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 -RERAAEYAEEAYAALEALPPSLPRARRALIALADFLYRR 236 (236)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhC
Confidence 4555666777777777665543 577888888888765
No 13
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.2e-36 Score=287.45 Aligned_cols=320 Identities=19% Similarity=0.135 Sum_probs=249.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCcccc----HHHHH
Q 014706 94 SPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELT----TKHRR 169 (420)
Q Consensus 94 ~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~----~~~~~ 169 (420)
+...|.+.|+.+-.++.+..... ...+...+.+.+...|. ..|||..|+..++.+.+++.+ ..++. ..+..
T Consensus 8 ~k~~f~~~f~~~vr~i~~~~~~~-~~~~da~~~~~~~L~yN-~~GGK~nRgl~vv~s~~~L~~---~~~l~~~~~~~a~~ 82 (347)
T KOG0711|consen 8 EKQDFLQVFPVLVRVLTEDLMAH-GESGDATEWLKEVLDYN-VIGGKLNRGLSVVDSFKALVE---PRKLDEEELQLALI 82 (347)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc-CCChHHHHHHHHHHhcc-CcccccccchhHHHHHHHhcC---ccCCCHHHHHHHHH
Confidence 34455666666655543321100 00001122344555554 589999999999998887653 22222 23456
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcCh-HHHHHHhHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHH
Q 014706 170 LAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGT-RVAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDF 243 (420)
Q Consensus 170 lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~-~~Ail~GD~Ll~~a~~~l~~l-----~~~~v~~~ls~~~~~l 243 (420)
++|++|++++..||.|||||+|.+|||+||||++-|. -.|||-+-+|-+--..+|... ...++++++.+....+
T Consensus 83 lGw~vElLQaffLiaDDIMDnS~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T 162 (347)
T KOG0711|consen 83 LGWCVELLQAFFLVADDIMDNSKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQT 162 (347)
T ss_pred HHHHHHHHHHHHHHhhhhhccccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999 468888866666555555532 2367889999999999
Q ss_pred HhHHHHHhhhcc--CCCCCHHHHHHHHhhccHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhHHhhHhhhcc
Q 014706 244 ASGEIKQASSLF--DCDLELEEYLIKSYYKTASL-IAASTKGAAIFSGV-DGSLSKQMYEYGRNLGLSFQIVDDILDFTQ 319 (420)
Q Consensus 244 ~~Ge~~q~~~~~--~~~~t~~~Yl~~i~~KTa~L-~~~a~~~gailag~-~~~~~~~l~~~G~~lGiafQI~DDllD~~~ 319 (420)
+.|+++...... -...+++.|..|+.+|||.+ |.+|.++|.+++|. ..+.......+...+|..||+|||++|++|
T Consensus 163 ~lGdllt~~~~~~~ls~fsl~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fg 242 (347)
T KOG0711|consen 163 ELGDLLTTPEGNKDLSKFSLEKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFG 242 (347)
T ss_pred hhhccccCcccchhHhhhhHHHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcC
Confidence 999554322211 12478999999999999999 99999999999995 456777888999999999999999999999
Q ss_pred chhhhCCCCcccccCCcccHHHHHHhhh-ChHHHHHHHhhcCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Q 014706 320 SAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIESEFCET--GSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNL 396 (420)
Q Consensus 320 ~~~~~GK~~g~DL~eGk~TlP~l~ale~-~~~l~~~l~~~~~~~--~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L 396 (420)
||+.+|| .|+||.++|+||.+.+|+++ ++++..++..+++.+ +.++.+..+..+.+......+.-..........|
T Consensus 243 Dp~vtgk-iGtDIqDnKCsWlv~~al~~~~~eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~~~~~Ik~~I 321 (347)
T KOG0711|consen 243 DPEVTGK-IGTDIQDNKCSWLVVKALQRASAEQYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEGSYKKIKKLI 321 (347)
T ss_pred ChhhcCC-CCCccccCceeeehHHHHhhcCHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHH
Confidence 9999999 89999999999999999998 899999999988754 5788999999999999999999999888888888
Q ss_pred ccCCCC--hHHHHHHHHHHHHhccC
Q 014706 397 HCLPRS--PFRVALEDMVMFNLERF 419 (420)
Q Consensus 397 ~~lp~~--~~~~~L~~l~~~~~~R~ 419 (420)
..++.+ +....+..++..+.+|.
T Consensus 322 ~~~~~~~~~~~~v~t~fl~kiykr~ 346 (347)
T KOG0711|consen 322 SQVDEDTGVKVKVGTSFLNKIYKRS 346 (347)
T ss_pred HHccCCCcchhhhHHHHHHHHHhhc
Confidence 887754 45666667888888775
No 14
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-35 Score=275.47 Aligned_cols=276 Identities=22% Similarity=0.340 Sum_probs=231.1
Q ss_pred ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhh
Q 014706 124 NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL 203 (420)
Q Consensus 124 ~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~ 203 (420)
...+.++..|++..+||.+|--|.+. ++.|...+ .++...+..++||+|++||+.|||.|+|.+|||.|+.|..
T Consensus 20 ~~ill~Py~yilq~PGKqfR~~L~~a----fNhwl~~P--~dkLaii~~ivemLHNsSLLIDDIEDNs~LRRG~pvaHsI 93 (322)
T KOG0777|consen 20 ESILLKPYNYILQKPGKQFRLNLIVA----FNHWLNLP--KDKLAIISQIVEMLHNSSLLIDDIEDNSPLRRGQPVAHSI 93 (322)
T ss_pred HHHHhchHHHHHhCchHHHHHHHHHH----HHHHHhCC--HHHHHHHHHHHHHHhccceeeccccccchhhcCCcchhhh
Confidence 34577899999999999999999884 44454433 2455667899999999999999999999999999999999
Q ss_pred cChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhc-cCCCCCHHHHHHHHhhccHHHHHHHHHH
Q 014706 204 YGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSL-FDCDLELEEYLIKSYYKTASLIAASTKG 282 (420)
Q Consensus 204 ~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~-~~~~~t~~~Yl~~i~~KTa~L~~~a~~~ 282 (420)
||+...|++++|++.+|++.+..+..++.++++.+-+..+..||-++..+. +-..++.++|..|+..|||-||.++.++
T Consensus 94 yGvpStINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcPtee~Yk~Mv~~KTGGLF~La~rL 173 (322)
T KOG0777|consen 94 YGVPSTINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCPTEEMYKNMVMNKTGGLFRLALRL 173 (322)
T ss_pred ccCcchhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCCCHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999954443222 1135799999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhCh---HHHHHHHhhc
Q 014706 283 AAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEP---KLREIIESEF 359 (420)
Q Consensus 283 gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~---~l~~~l~~~~ 359 (420)
.-.++... +.+..+-.-+|+.|||+||++++-..+..-.|..+.||.|||.++|+++|+...+ ....++....
T Consensus 174 MqlfS~~k----edl~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q~~Qvl~ILrqRT 249 (322)
T KOG0777|consen 174 MQLFSHHK----EDLVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQTEQVLRILRQRT 249 (322)
T ss_pred HHHHHhcc----hhHHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCchHHHHHHHHHhh
Confidence 99888554 3466788899999999999999976655567999999999999999999997643 3444554444
Q ss_pred CCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Q 014706 360 CETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALE 409 (420)
Q Consensus 360 ~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~ 409 (420)
.+-+-....++++++.|.++|++....+...+|...++....+++-..|.
T Consensus 250 ~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Npyl~~L~ 299 (322)
T KOG0777|consen 250 SDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENPYLPDLA 299 (322)
T ss_pred ccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence 33333456899999999999999999999999999999988887755544
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.92 E-value=2.1e-22 Score=187.29 Aligned_cols=223 Identities=35% Similarity=0.471 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhh---cChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q 014706 168 RRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL---YGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFA 244 (420)
Q Consensus 168 ~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~---~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~ 244 (420)
..++.++|.+|+++++||||+|++..|+|.|++|.. +|...+++.|+.++..++..+...........+.+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLL 92 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998 99999999999999999999988767788899999999999
Q ss_pred hHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhh
Q 014706 245 SGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 324 (420)
Q Consensus 245 ~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~ 324 (420)
.|+..+.....+..++.++|..+++.|||.++...+..++...+.+......+..++.++|++||+.||+.||..+.+..
T Consensus 93 ~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~ 172 (243)
T cd00385 93 EGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERG 172 (243)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 99998876654456899999999999999999999999998888777788899999999999999999999998775432
Q ss_pred CCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCCh-
Q 014706 325 GKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP- 403 (420)
Q Consensus 325 GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~- 403 (420)
+|+.|+|.+++.+....... ...++..+.++.+.+.+..+.+++++.+..+....
T Consensus 173 ---------~~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (243)
T cd00385 173 ---------EGKCTLPVLYALEYGVPAED---------------LLLVEKSGSLEEALEELAKLAEEALKELNELILSLP 228 (243)
T ss_pred ---------CCchHHHHHHHHHhCChhhH---------------HHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 57899999999886322111 11677888899999999999999999988766542
Q ss_pred -HHHHHHHHHHH
Q 014706 404 -FRVALEDMVMF 414 (420)
Q Consensus 404 -~~~~L~~l~~~ 414 (420)
....+...+..
T Consensus 229 ~~~~~~~~~~~~ 240 (243)
T cd00385 229 DVPRALLALALN 240 (243)
T ss_pred HHHHHHHHHHHH
Confidence 34444444443
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.50 E-value=0.0023 Score=60.68 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q 014706 164 TTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 243 (420)
Q Consensus 164 ~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l 243 (420)
.++....+.++-++|+|..+||.|-. +..+.+...-.+ ...||+|||+=++-+.+|++.++..+++.+++++..+
T Consensus 32 ~~~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k~R----QLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~ei 106 (212)
T PF07307_consen 32 EEEAERYALATMLVQIALDTHDEVDN-AGDESEESSKER----QLTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKEI 106 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHHhh----hhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35677889999999999999999966 333333222222 4699999999999999999999999999999999999
Q ss_pred HhHHHHHhhhccCCCCCHHHHHHHHh-hccHHHH
Q 014706 244 ASGEIKQASSLFDCDLELEEYLIKSY-YKTASLI 276 (420)
Q Consensus 244 ~~Ge~~q~~~~~~~~~t~~~Yl~~i~-~KTa~L~ 276 (420)
.+..+.= ......+.++|++.+. -+|+.+.
T Consensus 107 NE~K~~l---y~~~~~~~e~~~~~~~~ies~l~~ 137 (212)
T PF07307_consen 107 NELKMSL---YQKKKETAEEYLESVVTIESALFQ 137 (212)
T ss_pred HHHHHHH---HHhhhCCHHHHHHHHHHHHHHHHH
Confidence 8886531 1122347788876443 3444433
No 17
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=97.07 E-value=0.022 Score=57.89 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh
Q 014706 230 LEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQ 309 (420)
Q Consensus 230 ~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQ 309 (420)
+....++...+..|..|.............|+++|.+-+++=.|..-.+.+.+-+. +|..++......+++..+|+|+|
T Consensus 100 ~~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQ 178 (336)
T TIGR01559 100 PKYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQ 178 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHH
Confidence 34667777888888899754432211111688999888888777766665555332 33332222234678999999999
Q ss_pred HHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 014706 310 IVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKA 389 (420)
Q Consensus 310 I~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~ 389 (420)
+.|=+.|+. .|+.+|.+=||.=..-+......++ .+++..+++.+ .+++-...|..+.
T Consensus 179 lTNIlRDv~-----------ED~~~GR~YlP~e~l~~~g~~~~dl-----~~~~~~~~~~~------~l~~lv~~A~~~~ 236 (336)
T TIGR01559 179 KTNIIRDYL-----------EDINEGRMFWPREIWSKYAKKLGDF-----KKPENSDKALQ------CLNELVTNALHHA 236 (336)
T ss_pred HHHHHHHHH-----------hHHhCCCCCCCHHHHHHcCCCHHHh-----cCccccHHHHH------HHHHHHHHHHHHH
Confidence 999999974 6778888999965332222122221 12223333333 2445667788899
Q ss_pred HHHHHHhccCCCCh
Q 014706 390 NLAIHNLHCLPRSP 403 (420)
Q Consensus 390 ~~A~~~L~~lp~~~ 403 (420)
+.|+..+..+++..
T Consensus 237 ~~al~yl~~l~~~~ 250 (336)
T TIGR01559 237 TDCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999997654
No 18
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=96.53 E-value=0.14 Score=49.78 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhH
Q 014706 235 LISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDI 314 (420)
Q Consensus 235 ~ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDl 314 (420)
+..+.+..+.+|...++.. ..-.|++++..-+++-+|++..+.+.+... .+++ .....++.++|.|+|+.|=+
T Consensus 88 l~~~~l~~li~~~~~dl~~--~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~---~~~~--~~~~~~a~~lG~alql~nil 160 (267)
T PF00494_consen 88 LPREPLLELIDGMEMDLEF--TPYETFADLERYCYYVAGSVGLLLLQLLGA---HDPD--EAARDAARALGRALQLTNIL 160 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT---S--SSHHHHHHHHHHHTHHHHHHHHHHHHS---STSH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccccC--CCCCCHHHHHHHHHHHHHHHHHHHHHHhcc---ccch--hhHHHHHHHHHHHHHHHHHH
Confidence 3445556677776544432 334588999988888889888877665432 1222 56788899999999999988
Q ss_pred hhhccchhhhCCCCccc-ccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 014706 315 LDFTQSAEQLGKPAASD-LAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAI 393 (420)
Q Consensus 315 lD~~~~~~~~GK~~g~D-L~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~ 393 (420)
.|+- .| +..|++-+|.=..-+..-...+++... ... +.+..+ +......++.+.++|.
T Consensus 161 Rd~~-----------~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~-~~~---~~~~~~------~~~~~~~A~~~l~~a~ 219 (267)
T PF00494_consen 161 RDIP-----------EDALRRGRIYLPLDDLRRFGVTPEDLLAGR-PRS---ERLRAL------IRELAARARAHLDEAR 219 (267)
T ss_dssp HTHH-----------HH-HHTT---S-HHHHHHTTSSHHHHHHHG--GG---HHHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHhH-----------HHHHhcccccCCchhHHHcCCCHHHHHhcc-cCC---HHHHHH------HHHHHHHHHHHHHHHH
Confidence 8863 67 678889999876544321111222211 001 112222 3466778899999999
Q ss_pred HHhccCCCChHHHH
Q 014706 394 HNLHCLPRSPFRVA 407 (420)
Q Consensus 394 ~~L~~lp~~~~~~~ 407 (420)
..+..+|+...+..
T Consensus 220 ~~~~~l~~~~~~~~ 233 (267)
T PF00494_consen 220 AGLSALPPPRARPA 233 (267)
T ss_dssp HGGGGS--TTHHHH
T ss_pred HHHHHcCCHhhhHH
Confidence 99999955544443
No 19
>PLN02632 phytoene synthase
Probab=96.04 E-value=0.2 Score=50.78 Aligned_cols=137 Identities=14% Similarity=0.118 Sum_probs=84.9
Q ss_pred HHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHhHHhhHhh
Q 014706 239 VIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVD--GSLSKQMYEYGRNLGLSFQIVDDILD 316 (420)
Q Consensus 239 ~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~--~~~~~~l~~~G~~lGiafQI~DDllD 316 (420)
.+.++.+|...++.. ..-.|++++..-+++-.|.+..+++.+ ++..+ +...+.+...+.++|+|+|+.|=+.|
T Consensus 141 ~~~~li~g~~~Dl~~--~~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILRD 215 (334)
T PLN02632 141 PFRDMIEGMRMDLVK--SRYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILRD 215 (334)
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566775544432 234588888888888777777766654 23222 22235567889999999999998888
Q ss_pred hccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Q 014706 317 FTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNL 396 (420)
Q Consensus 317 ~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L 396 (420)
+ +.|+..|.+-+|.=..-+..-...+++... .-+.+..+ +.+-...++.|.++|...+
T Consensus 216 v-----------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~-----~~~~~~~l------~~~~~~~Ar~~~~~a~~~l 273 (334)
T PLN02632 216 V-----------GEDARRGRVYLPQDELAQFGLTDEDIFAGK-----VTDKWRAF------MKFQIKRARMYFAEAEEGV 273 (334)
T ss_pred H-----------HHHHhCCceeCCHHHHHHcCCCHHHHhcCC-----CCHHHHHH------HHHHHHHHHHHHHHHHHhH
Confidence 7 367788889888655433211111222111 11122222 2334467889999999999
Q ss_pred ccCCCC
Q 014706 397 HCLPRS 402 (420)
Q Consensus 397 ~~lp~~ 402 (420)
..+|..
T Consensus 274 ~~lp~~ 279 (334)
T PLN02632 274 SELDPA 279 (334)
T ss_pred hhCCHH
Confidence 988864
No 20
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.81 E-value=0.52 Score=46.05 Aligned_cols=133 Identities=10% Similarity=0.002 Sum_probs=80.6
Q ss_pred HHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhc
Q 014706 239 VIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFT 318 (420)
Q Consensus 239 ~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~ 318 (420)
.+..+.+|...++. .....|++++..-+++-.|++..+++.+ ++..+++ ...++.++|+|+|+.|=+.|+
T Consensus 87 ~~~~li~~~~~Dl~--~~~~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl- 156 (266)
T TIGR03464 87 PFLDLLDAFRQDVV--VTRYATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV- 156 (266)
T ss_pred HHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh-
Confidence 33445556543332 1234578888887777777777766543 3333322 346899999999999988886
Q ss_pred cchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcc
Q 014706 319 QSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHC 398 (420)
Q Consensus 319 ~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~ 398 (420)
+.|+..|.+.+|.=..-+..-...+++... .. ..+..+ +.+....++.+.++|...+..
T Consensus 157 ----------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~--~~---~~~~~~------~~~~~~~A~~~~~~a~~~~~~ 215 (266)
T TIGR03464 157 ----------GVDYRKGRVYLPRDDLARFGVSEEDLAAGR--AT---PALREL------MAFEVSRTRALLDRGAPLAAR 215 (266)
T ss_pred ----------HHHHhcCCccCCHHHHHHcCCCHHHHhcCC--CC---HHHHHH------HHHHHHHHHHHHHHHHHhHHh
Confidence 367778889998655433211111222111 11 122221 445666788999999999999
Q ss_pred CCCC
Q 014706 399 LPRS 402 (420)
Q Consensus 399 lp~~ 402 (420)
+|..
T Consensus 216 lp~~ 219 (266)
T TIGR03464 216 VDGR 219 (266)
T ss_pred CCHh
Confidence 9854
No 21
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=95.53 E-value=1.4 Score=42.75 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=83.2
Q ss_pred HHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhc
Q 014706 239 VIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFT 318 (420)
Q Consensus 239 ~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~ 318 (420)
.+..+.+|...++. ...-.+++++..-+++-.|++..+++.+ ++.... +....++.++|+|+|+.|=+.|+-
T Consensus 94 ~~~~li~g~~~Dl~--~~~~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~---~~~~~~A~~lG~AlqltnilRdv~ 165 (265)
T cd00683 94 PFRDLLAGMAMDLD--KRRYETLDELDEYCYYVAGVVGLMLLRV---FGASSD---EAALERARALGLALQLTNILRDVG 165 (265)
T ss_pred HHHHHHHHHHHhCC--CCCCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666554432 2234578888887777777766655543 222122 346688999999999999888873
Q ss_pred cchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcc
Q 014706 319 QSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHC 398 (420)
Q Consensus 319 ~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~ 398 (420)
.|+..|.+.+|.=..-+..-...+++. ...-+.+..+ +.+....++.+...|...+..
T Consensus 166 -----------eD~~~gR~YlP~d~l~~~gv~~~~l~~-----~~~~~~~~~~------~~~~~~~A~~~~~~a~~~~~~ 223 (265)
T cd00683 166 -----------EDARRGRIYLPREELARFGVTLEDLLA-----PENSPAFRAL------LRRLIARARAHYREALAGLAA 223 (265)
T ss_pred -----------HHHccCCCcCCHHHHHHcCCCHHHHcC-----CCCCHHHHHH------HHHHHHHHHHHHHHHHHhHHh
Confidence 677888899987654433211112221 1111222222 445667789999999999999
Q ss_pred CCCC
Q 014706 399 LPRS 402 (420)
Q Consensus 399 lp~~ 402 (420)
+|..
T Consensus 224 lp~~ 227 (265)
T cd00683 224 LPRR 227 (265)
T ss_pred CCHh
Confidence 9843
No 22
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=94.44 E-value=0.68 Score=45.17 Aligned_cols=133 Identities=16% Similarity=0.111 Sum_probs=83.5
Q ss_pred HHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhc
Q 014706 239 VIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFT 318 (420)
Q Consensus 239 ~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~ 318 (420)
.+.++.+|...++. .....|.+++..-+++-.|.+..+.+.+ ++ ..+ +....++.++|.|+|+.|=+.|+
T Consensus 86 ~~~~li~g~~~Dl~--~~~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg-~~~---~~~~~~a~~lG~AlqltnilRdv- 155 (266)
T TIGR03465 86 DFLEVIDGMEMDLE--QTRYPDFAELDLYCDRVAGAVGRLSARI---FG-ATD---ARTLEYAHHLGRALQLTNILRDV- 155 (266)
T ss_pred HHHHHHHHHHHHcC--CCCCCCHHHHHHHHHHhHHHHHHHHHHH---hC-CCC---hhHHHHHHHHHHHHHHHHHHHHh-
Confidence 45566677554432 2334588888888887777777776654 33 222 23567899999999999988886
Q ss_pred cchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcc
Q 014706 319 QSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHC 398 (420)
Q Consensus 319 ~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~ 398 (420)
+.|+..|++.+|.=..-+.+-...+++... .. +.+..+ +.+-...++.+.++|...+..
T Consensus 156 ----------~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~--~~---~~~~~~------~~~l~~~A~~~l~~a~~~~~~ 214 (266)
T TIGR03465 156 ----------GEDARRGRIYLPAEELQRFGVPAADILEGR--YS---PALAAL------CRFQAERARAHYAEADALLPA 214 (266)
T ss_pred ----------HHHHhCCCeecCHHHHHHcCCCHHHhcCCC--CC---HHHHHH------HHHHHHHHHHHHHHHHHhhhh
Confidence 367778889999755433321111122111 11 122221 344556678888999988888
Q ss_pred CCCC
Q 014706 399 LPRS 402 (420)
Q Consensus 399 lp~~ 402 (420)
+|..
T Consensus 215 ~p~~ 218 (266)
T TIGR03465 215 CDRR 218 (266)
T ss_pred CCHh
Confidence 8854
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=92.94 E-value=9.3 Score=37.52 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC--CChHHHH--HHHHHHHHH
Q 014706 230 LEVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSG--VDGSLSK--QMYEYGRNL 304 (420)
Q Consensus 230 ~~v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag--~~~~~~~--~l~~~G~~l 304 (420)
+.....+.+.+.....+.+.+..... ...+++++|+.+-..-.|..+.... +-...| .++...+ .+..+-...
T Consensus 128 ~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l--~~~~~g~~lp~~~~~~~~~~~l~~~~ 205 (303)
T cd00687 128 AEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGL--SEFIGGPEVPAAVRLDPVMRALEALA 205 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHH--HHHhcCCCCCHHHHhChHHHHHHHHH
Confidence 55566677777777778776654432 3457999999865444455443322 112223 3444433 377788888
Q ss_pred HHHHhHHhhHhhhccc
Q 014706 305 GLSFQIVDDILDFTQS 320 (420)
Q Consensus 305 GiafQI~DDllD~~~~ 320 (420)
+...-+.||+..|-.+
T Consensus 206 ~~~~~l~NDl~S~~KE 221 (303)
T cd00687 206 SDAIALVNDIYSYEKE 221 (303)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 9999999999998543
No 24
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=85.76 E-value=34 Score=32.79 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhc-cCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHHH
Q 014706 231 EVIKLISQVIKDFASGEIKQASSL-FDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDG---SLSKQMYEYGRNLGL 306 (420)
Q Consensus 231 ~v~~~ls~~~~~l~~Ge~~q~~~~-~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~---~~~~~l~~~G~~lGi 306 (420)
.....+.+.+..+..+...+.... ....++.++|+.+-..-.|..+..++..-+.--..++ .....+..+....+.
T Consensus 122 ~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~ 201 (284)
T cd00868 122 ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASST 201 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHH
Confidence 455566667777777777665543 2456899999997655544544333222111012344 345667778888888
Q ss_pred HHhHHhhHhhhc
Q 014706 307 SFQIVDDILDFT 318 (420)
Q Consensus 307 afQI~DDllD~~ 318 (420)
.-=+.||+..|-
T Consensus 202 ~~~l~NDl~S~~ 213 (284)
T cd00868 202 IGRLLNDIASYE 213 (284)
T ss_pred HHHHhccchHHH
Confidence 889999999984
No 25
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=75.74 E-value=41 Score=33.51 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=76.5
Q ss_pred HHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHh
Q 014706 236 ISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDIL 315 (420)
Q Consensus 236 ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDll 315 (420)
..+.+.++..|...++.... -.++++...-+++=.|....+ +..+++-.. ..........+|.|+|+.|=+.
T Consensus 101 ~~~~~~~~~da~~~Dl~~~~--y~~~~eL~~Yc~~vAg~vG~l---~~~Il~~~~---~~~~~~~a~~lG~A~QlvNilR 172 (288)
T COG1562 101 PREAFPALIDAMRMDLDRTR--YLDFEELEEYCYGVAGAVGLL---LARILGPDK---DAATRAYARGLGLALQLVNILR 172 (288)
T ss_pred CHHHHHHHHHHHHHHhhhcc--ccCHHHHHHHHHHhHHHHHHH---HHHHhCccc---chhhHHHHHHHHHHHHHHHHHH
Confidence 34455666777655543321 123444444444333333222 223333221 2345555666999999999888
Q ss_pred hhccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q 014706 316 DFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHN 395 (420)
Q Consensus 316 D~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~ 395 (420)
|+ +.|.++|+.-+|.=-...-.....+++.. ..-+.... .+++-...++++...|...
T Consensus 173 dv-----------~eD~~~GrvylP~e~l~~~g~~~~d~~~~-----~~~~~~~~------~~~~~~~~ar~~~~~a~~~ 230 (288)
T COG1562 173 DV-----------GEDRRRGRVYLPAEELARFGVSEADLLAG-----RVDDAFRE------LMRFEADRARDHLAEARRG 230 (288)
T ss_pred Hh-----------HHHHhCCcccCCHHHHHHhCCCHHHHHcc-----cchhHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 86 47778888888854433222222222211 11112222 2456677888999999999
Q ss_pred hccCCCCh
Q 014706 396 LHCLPRSP 403 (420)
Q Consensus 396 L~~lp~~~ 403 (420)
|..||...
T Consensus 231 ~~~lp~~~ 238 (288)
T COG1562 231 LPALPGRA 238 (288)
T ss_pred hhhCCccc
Confidence 99998764
No 26
>PRK10581 geranyltranstransferase; Provisional
Probab=63.75 E-value=53 Score=32.80 Aligned_cols=62 Identities=26% Similarity=0.251 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCC------------CCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC
Q 014706 167 HRRLAEIIEMIHTASLIHDDVLDE------------SDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228 (420)
Q Consensus 167 ~~~lAaavEliH~AsLIHDDIiD~------------s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~ 228 (420)
...+...-+.+=.|+-|.|||.|- .+.+.|++|+=..+|...|-...+-++.+|...+..++
T Consensus 205 ~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 205 LPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345666778889999999999983 34577778777777766666666666666666666653
No 27
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=59.34 E-value=1.8e+02 Score=28.49 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCC----C-CCCCchhhhcChHHHHHHhHHHHHHHHHHHH
Q 014706 170 LAEIIEMIHTASLIHDDVLDESDM----R-RGQETVHQLYGTRVAVLAGDFMFAQSSWYLA 225 (420)
Q Consensus 170 lAaavEliH~AsLIHDDIiD~s~~----R-RG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~ 225 (420)
+..++=++|.+..+..|+.|.+-. | +.+|-..-+...+.|...+-.+...++-...
T Consensus 45 ~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~ 105 (281)
T TIGR01474 45 FTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLL 105 (281)
T ss_pred HHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344556889999999999775433 2 3677777777888888887777666654443
No 28
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=58.47 E-value=13 Score=30.22 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhHHhhHhhhc
Q 014706 290 DGSLSKQMYEYGRNLGLSFQIVDDILDFT 318 (420)
Q Consensus 290 ~~~~~~~l~~~G~~lGiafQI~DDllD~~ 318 (420)
.+...+.+-+||..+|-.||++==+--++
T Consensus 14 Eet~~e~llRYGLf~GAIFQliCilAiI~ 42 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLICILAIIL 42 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 35678899999999999999985443333
No 29
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=57.46 E-value=1.9e+02 Score=28.87 Aligned_cols=50 Identities=8% Similarity=-0.102 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhcccCCCCCCC---CCCCchhhhcChHHHHHHhHHHHHHHHH
Q 014706 173 IIEMIHTASLIHDDVLDESDMR---RGQETVHQLYGTRVAVLAGDFMFAQSSW 222 (420)
Q Consensus 173 avEliH~AsLIHDDIiD~s~~R---RG~pt~h~~~G~~~Ail~GD~Ll~~a~~ 222 (420)
+.-++|.++.+..|+.|.+..| +.+|...-+...+.+...+-.++..++-
T Consensus 73 ~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 125 (314)
T PRK07566 73 AGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLA 125 (314)
T ss_pred HHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHH
Confidence 3557899999999999976655 4466666667778888777666655543
No 30
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=55.64 E-value=2.1e+02 Score=27.95 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCC---CCCCchhhhcChHHHHHHhHHHHHHHHHHH
Q 014706 170 LAEIIEMIHTASLIHDDVLDESDMR---RGQETVHQLYGTRVAVLAGDFMFAQSSWYL 224 (420)
Q Consensus 170 lAaavEliH~AsLIHDDIiD~s~~R---RG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l 224 (420)
...++=++|.+..+..|+.|-+..| +.+|-...+...+.|...+-.++..+.-..
T Consensus 42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~ 99 (279)
T PRK09573 42 AALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILS 99 (279)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 3445668999999999998876544 567877777888888888877776665433
No 31
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=51.21 E-value=2.1e+02 Score=26.75 Aligned_cols=147 Identities=16% Similarity=0.106 Sum_probs=75.9
Q ss_pred HHHHHHHhhhcccCCCCCCCC--CC---CchhhhcChHHHHHHhHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhHHH
Q 014706 175 EMIHTASLIHDDVLDESDMRR--GQ---ETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-LEVIKLISQVIKDFASGEI 248 (420)
Q Consensus 175 EliH~AsLIHDDIiD~s~~RR--G~---pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~-~~v~~~ls~~~~~l~~Ge~ 248 (420)
=++|.+.-+.||+.|-+..|. ++ |-...+...+.+...+-.++..+.-.....+. .-.+-.+.-.+. +..-
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~-~~Ys-- 109 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILLLGFLLG-LLYS-- 109 (257)
T ss_pred HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHh--
Confidence 399999999999988777766 43 34455666666666665555544433222221 111111111111 1000
Q ss_pred HHhhhccCCCCCHHHHHHHHhh-cc---HHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhHHhhHhhhccchhh
Q 014706 249 KQASSLFDCDLELEEYLIKSYY-KT---ASLIAASTKGAAIFSGVD-GSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQ 323 (420)
Q Consensus 249 ~q~~~~~~~~~t~~~Yl~~i~~-KT---a~L~~~a~~~gailag~~-~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~ 323 (420)
.. -.++.... |. |..+.....+|....+.+ +...-.+.-+.--++......+|+.|+.+
T Consensus 110 ~~------------~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---- 173 (257)
T PF01040_consen 110 PP------------LRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEG---- 173 (257)
T ss_pred hh------------hhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHH----
Confidence 00 00000011 21 222333334444444443 33333344444677778888889999864
Q ss_pred hCCCCcccccCCcccHHHHHHhhh
Q 014706 324 LGKPAASDLAKGNLTAPVIFALEK 347 (420)
Q Consensus 324 ~GK~~g~DL~eGk~TlP~l~ale~ 347 (420)
|.+.|+.|+|+.+..++
T Consensus 174 -------D~~~g~~Tl~v~~G~~~ 190 (257)
T PF01040_consen 174 -------DRKAGRRTLPVLLGEKK 190 (257)
T ss_pred -------HHHcCCcchHHHHHHHH
Confidence 45678899999986553
No 32
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=50.05 E-value=2.5e+02 Score=27.24 Aligned_cols=156 Identities=13% Similarity=0.007 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCC---CCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Q 014706 169 RLAEIIEMIHTASLIHDDVLDESDM---RRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFAS 245 (420)
Q Consensus 169 ~lAaavEliH~AsLIHDDIiD~s~~---RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~ 245 (420)
-...++=++|.+..+.+|+.|.+.. |..+|-...+...+.+...+-.+..-++-...-+ ++...-+ . .+ .+..
T Consensus 41 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l-~~~~~~~-~-~~-~~~~ 116 (279)
T PRK12884 41 LGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI-SPLAFLV-V-IL-VSVL 116 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH-H-HH-HHHH
Confidence 3445567899999999999776544 5556666555666677766655555444333222 1111111 0 01 0111
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhC
Q 014706 246 GEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLG 325 (420)
Q Consensus 246 Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~G 325 (420)
+-..-.. .....-..+.. .|..++.+...|....+......-.+.-+.--..+.+++..|+.|..
T Consensus 117 ~~~Ys~~--lK~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e------- 181 (279)
T PRK12884 117 GILYNWK--LKEYGLIGNLY------VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVE------- 181 (279)
T ss_pred HHHHHHh--hccccchhHHH------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence 2111100 01000011111 12233344444444333332222223333444556677788888864
Q ss_pred CCCcccccCCcccHHHHHHhhh
Q 014706 326 KPAASDLAKGNLTAPVIFALEK 347 (420)
Q Consensus 326 K~~g~DL~eGk~TlP~l~ale~ 347 (420)
.|-+.|+.|+|+.+.-++
T Consensus 182 ----~D~~~G~~Tl~v~~G~~~ 199 (279)
T PRK12884 182 ----GDRLRGARTLAILYGEKI 199 (279)
T ss_pred ----hHHHcCCeeechHhcHHH
Confidence 566788999999998764
No 33
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=49.17 E-value=2.6e+02 Score=27.15 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=27.2
Q ss_pred HHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhC
Q 014706 303 NLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKE 348 (420)
Q Consensus 303 ~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~ 348 (420)
-+-..+++..|+.|.. .|-+.|+.|+|+.+..++.
T Consensus 172 l~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~lG~~~t 206 (285)
T PRK12872 172 LKSFIREIVFDIKDIE-----------GDRKSGLKTLPIVLGKERT 206 (285)
T ss_pred HHHHHHHHHHhcccch-----------hHHHcCCcccchhcchHHH
Confidence 3356788999999975 4557788999999988753
No 34
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=45.58 E-value=3e+02 Score=26.79 Aligned_cols=56 Identities=14% Similarity=0.021 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCC---CCCCCchhhhcChHHHHHHhHHHHHHHHHHHH
Q 014706 170 LAEIIEMIHTASLIHDDVLDESDM---RRGQETVHQLYGTRVAVLAGDFMFAQSSWYLA 225 (420)
Q Consensus 170 lAaavEliH~AsLIHDDIiD~s~~---RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~ 225 (420)
+..+.=++|.++.+..|+.|-+.. |+.+|-..-....+.|...+-.+...++-...
T Consensus 43 ~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~ 101 (276)
T PRK12882 43 AFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAF 101 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999765543 57788887778888888888777766654433
No 35
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=37.27 E-value=5.7e+02 Score=27.68 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHH-HHHHHHhcC-CChHHHHHHH---HHHH
Q 014706 229 NLEVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAAS-TKGAAIFSG-VDGSLSKQMY---EYGR 302 (420)
Q Consensus 229 ~~~v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a-~~~gailag-~~~~~~~~l~---~~G~ 302 (420)
....+..+.+...+++.+-+.++.+.. ...|+.++|+.....-+|...... +..+ ++. .+++..+.+. .+..
T Consensus 354 ~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~ 431 (542)
T cd00684 354 GSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLG--MGDILTEEAFEWLESRPKLVR 431 (542)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHh--cCCCCCHHHHHHHhccHHHHH
Confidence 345566677788888888877776653 346799999998665544443222 2222 121 4555544443 5777
Q ss_pred HHHHHHhHHhhHhhhccchhhhCCCCcccccCCc-ccHHHHHHhh
Q 014706 303 NLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGN-LTAPVIFALE 346 (420)
Q Consensus 303 ~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk-~TlP~l~ale 346 (420)
..+...-+.||+..+-... ..|. .+...+|.-+
T Consensus 432 ~~~~i~rL~NDi~S~~kE~-----------~rGdv~n~V~~ymke 465 (542)
T cd00684 432 ASSTIGRLMNDIATYEDEM-----------KRGDVASSIECYMKE 465 (542)
T ss_pred HHHHHHHHhcChhhhHHHH-----------hcCCcccHHHHHHHh
Confidence 7888899999999984321 2333 4777777654
No 36
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=36.84 E-value=4e+02 Score=26.69 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=35.5
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 285 IFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 285 ilag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
.+.|.+++....+...-+-+=.|.=|.||+.|= +++|.|++|....|.-.
T Consensus 56 ~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRg~pt~~~~~G~~ 105 (319)
T TIGR02748 56 KFGDYDLDAIKHVAVALELIHMASLVHDDVIDD------------ADLRRGRPTIKSKWGNR 105 (319)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhccccCC------------CCCCCCCcCHHHHhChH
Confidence 345555555555666667777788999999873 67888988887776644
No 37
>CHL00151 preA prenyl transferase; Reviewed
Probab=35.97 E-value=2.4e+02 Score=28.38 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCC
Q 014706 166 KHRRLAEIIEMIHTASLIHDDVLDE 190 (420)
Q Consensus 166 ~~~~lAaavEliH~AsLIHDDIiD~ 190 (420)
....+...-+-+=.|+-|.|||.|-
T Consensus 196 ~~~~l~~~G~~lG~aFQi~DDilD~ 220 (323)
T CHL00151 196 DHNDFYLYGKHLGLAFQIIDDVLDI 220 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445666667888899999999883
No 38
>PLN02857 octaprenyl-diphosphate synthase
Probab=35.42 E-value=2.7e+02 Score=29.33 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCC
Q 014706 167 HRRLAEIIEMIHTASLIHDDVLDE 190 (420)
Q Consensus 167 ~~~lAaavEliH~AsLIHDDIiD~ 190 (420)
...+...-+.+=.|+-|.|||+|-
T Consensus 290 ~~~l~~fG~~LGiAFQI~DDiLD~ 313 (416)
T PLN02857 290 KEQMYEYGKNLGLAFQVVDDILDF 313 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334566667888899999999883
No 39
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=31.25 E-value=4.5e+02 Score=24.70 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHH
Q 014706 232 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGV----DGSLSKQMYEYGRNLGL 306 (420)
Q Consensus 232 v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~----~~~~~~~l~~~G~~lGi 306 (420)
..+.+.+.+.....|...+..... ...+++++|+.+-+.-+|..+...+..-.+ ... .++....-..+-...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 216 (270)
T PF03936_consen 138 QIKRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFAL-EFALGELPPEVLEHPPMLRRLAAD 216 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHC-SSCHTHHHHHHHHTTHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhC-CCccccccHHHHHhchHHHHHHHH
Confidence 344567777777777776655543 346799999987666666655444332111 211 11222221125556666
Q ss_pred HHhHHhhHhhhc
Q 014706 307 SFQIVDDILDFT 318 (420)
Q Consensus 307 afQI~DDllD~~ 318 (420)
.--+.||+..|-
T Consensus 217 ~~~l~NDl~S~~ 228 (270)
T PF03936_consen 217 IIRLVNDLYSYK 228 (270)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhcccchhh
Confidence 666779999984
No 40
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=30.88 E-value=5.4e+02 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=23.2
Q ss_pred HHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhh
Q 014706 305 GLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK 347 (420)
Q Consensus 305 GiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~ 347 (420)
-..+-+.+|+.|.. +|.+.|+.|+|+.+..+.
T Consensus 188 ~~~~~~~~a~~D~e-----------~D~~~G~~Tlpv~~G~~~ 219 (297)
T PRK12871 188 TMAHLGLNDFIDLE-----------NDRARGMKSIAVLYGMKG 219 (297)
T ss_pred HHHHHHHHHHhhhh-----------hHHHcCCeeeeeeechHH
Confidence 34556777777753 677888999999987553
No 41
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=29.06 E-value=1.3e+02 Score=31.32 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHH--HHHHHHHHHHhHHhhHhhhcc
Q 014706 272 TASLIAASTKGAAIFSGVDGSLSKQMY--EYGRNLGLSFQIVDDILDFTQ 319 (420)
Q Consensus 272 Ta~L~~~a~~~gailag~~~~~~~~l~--~~G~~lGiafQI~DDllD~~~ 319 (420)
||..++++|.......|.+-- +.+. -+|..+|+. .||+-|+-+
T Consensus 371 tGv~IAaa~m~lss~tgnPIy--D~~GSivvGaLLGmV---e~diyDvK~ 415 (503)
T KOG2802|consen 371 TGVIIAAACMGLSSITGNPIY--DSLGSIVVGALLGMV---ENDIYDVKA 415 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCc--cccchHHHHHHHHHH---HHhhhhccc
Confidence 667778777776666664321 1222 368889987 888888743
No 42
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=28.78 E-value=5.9e+02 Score=25.29 Aligned_cols=50 Identities=6% Similarity=-0.112 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhcccCCCCCCC---CCCCchhhhcChHHHHHHhHHHHHHHH
Q 014706 172 EIIEMIHTASLIHDDVLDESDMR---RGQETVHQLYGTRVAVLAGDFMFAQSS 221 (420)
Q Consensus 172 aavEliH~AsLIHDDIiD~s~~R---RG~pt~h~~~G~~~Ail~GD~Ll~~a~ 221 (420)
.+.=++|.++-++.|+.|.+..+ |.+|........+.+...+-.++..++
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 45578999999999998866444 445555556677777777755555443
No 43
>PRK13591 ubiA prenyltransferase; Provisional
Probab=28.57 E-value=5.5e+02 Score=25.90 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCCCc
Q 014706 168 RRLAEIIEMIHTASLIHDDVLDESDMRRGQET 199 (420)
Q Consensus 168 ~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt 199 (420)
.+...+.-++-.+..+.||..|-...|=++|.
T Consensus 61 ~~~~~~~~L~~~s~~~iNd~~D~eiD~IN~P~ 92 (307)
T PRK13591 61 ILTCIAGGLIIYSVYTLDRALDSEEDAVNRSE 92 (307)
T ss_pred hHHHHHHHHHHHHHHHHhhhccchhhhccCcc
Confidence 34455666778888999999888776667773
No 44
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=27.25 E-value=3.1e+02 Score=26.36 Aligned_cols=54 Identities=28% Similarity=0.150 Sum_probs=40.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 281 KGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 281 ~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
.+.+.+.|.+++....+...-+-+=.++=|.||+.|= +++|.|++|.-..|.-.
T Consensus 22 ~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~------------s~~RRG~pt~~~~~G~~ 75 (260)
T PF00348_consen 22 LLAAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN------------SDLRRGKPTVHKKFGNA 75 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc------------cccCCCCcccccccccc
Confidence 3344455566667777888888888899999999873 66788888877776544
No 45
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=26.30 E-value=4.1e+02 Score=26.41 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=44.3
Q ss_pred CHHHHHHHHhhccHHHHHHHHHHHHHhc---CCChHHH-----HHHHHHHHHHHHHHhHHhhHhhhccchhh----hC--
Q 014706 260 ELEEYLIKSYYKTASLIAASTKGAAIFS---GVDGSLS-----KQMYEYGRNLGLSFQIVDDILDFTQSAEQ----LG-- 325 (420)
Q Consensus 260 t~~~Yl~~i~~KTa~L~~~a~~~gaila---g~~~~~~-----~~l~~~G~~lGiafQI~DDllD~~~~~~~----~G-- 325 (420)
+...|++.++-+|-.+.-.+...|+.++ +...+.. -...-+....| . +.||+.|..-|... ++
T Consensus 4 ~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag--~-~iND~~D~~~D~~~v~rtm~r~ 80 (297)
T PRK12871 4 TLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAG--F-VLNDYVDRKRDRLDVENTLTRY 80 (297)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH--H-HHhhHHHHhcCcchHhhhhhcc
Confidence 5678999999887544434433565554 2222221 11222334333 3 99999999766422 33
Q ss_pred -CC-CcccccCCcccHHHH
Q 014706 326 -KP-AASDLAKGNLTAPVI 342 (420)
Q Consensus 326 -K~-~g~DL~eGk~TlP~l 342 (420)
|| ...=+..|++|.-..
T Consensus 81 ~~P~~~Rpl~sG~is~~~a 99 (297)
T PRK12871 81 WRPFKERPIPSGKLSSKNA 99 (297)
T ss_pred ccCCCCCccCCCCcCHHHH
Confidence 44 345566777764433
No 46
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=24.67 E-value=1.6e+02 Score=29.30 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhh
Q 014706 273 ASLIAASTKGAAIFSGVDGSLSKQMYEYGRNL-GLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK 347 (420)
Q Consensus 273 a~L~~~a~~~gailag~~~~~~~~l~~~G~~l-GiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~ 347 (420)
+.+|......|....+..-...--+--.+--+ ..++.+.+|+.|+. .|-++||.|+|+.+..++
T Consensus 140 ~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie-----------~Dr~~G~~Tlpv~lG~~~ 204 (282)
T PRK13105 140 STHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVV-----------ADREAGIASIATVLGARR 204 (282)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchH-----------hHHHcCCccchHHhcHHH
No 47
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=24.32 E-value=5.3e+02 Score=24.91 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=49.1
Q ss_pred CHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHH-HHHhHHhhHhhhccchhhhCCCCcccccCCcc
Q 014706 260 ELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLS-KQMYEYGRNLG-LSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 337 (420)
Q Consensus 260 t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~-~~l~~~G~~lG-iafQI~DDllD~~~~~~~~GK~~g~DL~eGk~ 337 (420)
....|++.++-++......++..|+.++...-... -.+.-+|--+. .+-.+.||+.|+.-|... |+ ..=+-.|+.
T Consensus 3 ~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~--r~-~Rpl~~G~i 79 (279)
T PRK12884 3 KMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN--RP-DRPIPSGRI 79 (279)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc--CC-CCCCCCCCC
Confidence 35678999988887777777777887775432111 11111222221 234789999999877544 42 455777887
Q ss_pred cHHHHH
Q 014706 338 TAPVIF 343 (420)
Q Consensus 338 TlP~l~ 343 (420)
|....+
T Consensus 80 s~~~a~ 85 (279)
T PRK12884 80 SRREAL 85 (279)
T ss_pred CHHHHH
Confidence 766443
No 48
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=23.12 E-value=3.3e+02 Score=26.10 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=31.4
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHH
Q 014706 287 SGVDG-SLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 344 (420)
Q Consensus 287 ag~~~-~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~a 344 (420)
.|.++ +....+...-+-+=.++-|.||+.|= +++|.|++|+-..|.
T Consensus 33 ~g~~~~~~~~~la~aiEllh~asLIhDDI~D~------------s~~RRG~p~~~~~~G 79 (259)
T cd00685 33 LGGPELEAALRLAAAIELLHTASLVHDDVMDN------------SDLRRGKPTVHKVFG 79 (259)
T ss_pred hCCCchHHHHHHHHHHHHHHHHHHHHhhhccC------------CcccCCCCcHHHHhC
Confidence 34444 55566777777888899999999772 445667777655544
No 49
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=22.59 E-value=52 Score=27.76 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=22.0
Q ss_pred HHHHHHHHHHH-----HHHhHHhhHhhhccchhhhCCC
Q 014706 295 KQMYEYGRNLG-----LSFQIVDDILDFTQSAEQLGKP 327 (420)
Q Consensus 295 ~~l~~~G~~lG-----iafQI~DDllD~~~~~~~~GK~ 327 (420)
.++..|-.+.| -..+|.+|++|+|.....-|+|
T Consensus 29 ~~i~~Yl~~~~~~~g~~~~~il~dildlfEe~aadG~~ 66 (103)
T PF06304_consen 29 KAIQKYLWYFGPTDGRDMMEILSDILDLFEEAAADGKS 66 (103)
T ss_dssp HHHHHHHHHHTBSSHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455555555 3579999999999877666775
No 50
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=22.16 E-value=3.5e+02 Score=21.69 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=26.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHH----------HH-----HHhccCCCChHHHHHHHHHHHH
Q 014706 368 AIKLVKTSGGIEEAQELAKEKANL----------AI-----HNLHCLPRSPFRVALEDMVMFN 415 (420)
Q Consensus 368 i~~li~~~g~i~~a~~~a~~~~~~----------A~-----~~L~~lp~~~~~~~L~~l~~~~ 415 (420)
+..-+.++|-.+..+.++++.+.+ -+ .+-..+|+.--++.+..+-.|+
T Consensus 23 L~~rL~e~GW~d~vr~~~re~i~~~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~~Ir~~L 85 (86)
T PF10163_consen 23 LRQRLIECGWRDEVRQLCREIIRERGIDNLTFEDLLEEITPKARAMVPDEVKKELLQRIRAFL 85 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHH-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence 344556677777777777766655 11 1223566665566666655553
No 51
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=21.47 E-value=4e+02 Score=26.68 Aligned_cols=79 Identities=15% Similarity=-0.001 Sum_probs=51.4
Q ss_pred CCHHHHHHHH---hhccHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHHHHH-----hHHhhHhhhccchhhh
Q 014706 259 LELEEYLIKS---YYKTASLIAASTKGAAIFSGVD------GSLSKQMYEYGRNLGLSF-----QIVDDILDFTQSAEQL 324 (420)
Q Consensus 259 ~t~~~Yl~~i---~~KTa~L~~~a~~~gailag~~------~~~~~~l~~~G~~lGiaf-----QI~DDllD~~~~~~~~ 324 (420)
.+...|.+.. +-+|-.+.-.++..|..++... .... .-+.--+|..+ .+.||+.|.--|.. .
T Consensus 28 ~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~-~ 103 (314)
T PRK12878 28 PWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDAK-V 103 (314)
T ss_pred hhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C
Confidence 4678899999 7788888888998998887542 1211 11222334433 89999999755542 3
Q ss_pred CCCCcccccCCcccHHH
Q 014706 325 GKPAASDLAKGNLTAPV 341 (420)
Q Consensus 325 GK~~g~DL~eGk~TlP~ 341 (420)
.++...=|..|++|..-
T Consensus 104 ~Rt~~RPl~sG~is~~~ 120 (314)
T PRK12878 104 ARTRSRPLPSGQVSRKQ 120 (314)
T ss_pred CCCCCCCCCCCCcCHHH
Confidence 33344667788888543
No 52
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=20.83 E-value=2.8e+02 Score=27.92 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=36.5
Q ss_pred CHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHHh----HHhhHhhhccc
Q 014706 260 ELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLG-LSFQ----IVDDILDFTQS 320 (420)
Q Consensus 260 t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lG-iafQ----I~DDllD~~~~ 320 (420)
+...|++.+|-+|-..-..++.+|+.++-......+-..-+..-+| +++| +.||+-||..+
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g 67 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKA 67 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 4567899999998777777777887776311111111112233333 3345 68999999653
No 53
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=20.78 E-value=8.5e+02 Score=24.34 Aligned_cols=55 Identities=11% Similarity=-0.065 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhcccCCCCC---CCC--CCCchhhhcChHHHHHHhHHHHHHHHHHHH
Q 014706 171 AEIIEMIHTASLIHDDVLDESD---MRR--GQETVHQLYGTRVAVLAGDFMFAQSSWYLA 225 (420)
Q Consensus 171 AaavEliH~AsLIHDDIiD~s~---~RR--G~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~ 225 (420)
..+.=++|.++.+..|+.|.+- .+| .+|...-....+.|+..+-.+...++-.+.
T Consensus 78 ~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~ 137 (314)
T PRK12878 78 FVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL 137 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4456689999999999966532 343 578888888888888777666555554443
No 54
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=20.46 E-value=8.5e+02 Score=24.38 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 294 ~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
...+...-+.+=.|.-|.||++|- +|+|.|++|+-..|...
T Consensus 69 ~~~~A~avEliH~asLiHDDiiD~------------s~~RRG~pt~h~~~G~~ 109 (322)
T TIGR02749 69 HRRLAEITEMIHTASLVHDDVIDE------------SDTRRGIETVHSLFGTR 109 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcccccC------------ccccCCCccHHHHhCcH
Confidence 344555566777788999999873 67899999988876543
No 55
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=20.42 E-value=7.8e+02 Score=23.82 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=48.0
Q ss_pred CHHHHHHHHhhccHHHHHHHHHHHHHhcCCC-hHH-HHHHHHHHHHHH-HHHhHHhhHhhhccchhhhCCCCcccccCCc
Q 014706 260 ELEEYLIKSYYKTASLIAASTKGAAIFSGVD-GSL-SKQMYEYGRNLG-LSFQIVDDILDFTQSAEQLGKPAASDLAKGN 336 (420)
Q Consensus 260 t~~~Yl~~i~~KTa~L~~~a~~~gailag~~-~~~-~~~l~~~G~~lG-iafQI~DDllD~~~~~~~~GK~~g~DL~eGk 336 (420)
+...|++..+-++-.+-..+...|+.++... +.. .-.+.-.+--++ .+=.+.||+.|+.-|.. .| ...=+-.|+
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~--n~-~~Rpl~sG~ 78 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKI--NR-PNRPLPRGA 78 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhcccc--CC-CCCCCCCCc
Confidence 4567999999998777666666777776322 221 111111222222 34579999999986653 33 345566777
Q ss_pred ccHHHHH
Q 014706 337 LTAPVIF 343 (420)
Q Consensus 337 ~TlP~l~ 343 (420)
.|....+
T Consensus 79 is~~~a~ 85 (277)
T PRK12883 79 MSRKAAL 85 (277)
T ss_pred cCHHHHH
Confidence 7654443
Done!