Query 014706
Match_columns 420
No_of_seqs 199 out of 1581
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 7.2E-71 2.5E-75 553.2 36.6 321 93-419 19-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 5.5E-70 1.9E-74 546.5 36.9 320 94-419 7-332 (341)
3 3rmg_A Octaprenyl-diphosphate 100.0 4.6E-69 1.6E-73 538.5 31.1 316 97-419 5-325 (334)
4 3pko_A Geranylgeranyl pyrophos 100.0 1E-68 3.5E-73 536.0 29.5 316 100-420 16-334 (334)
5 1wy0_A Geranylgeranyl pyrophos 100.0 3.3E-68 1.1E-72 534.5 32.3 317 98-420 4-342 (342)
6 3lmd_A Geranylgeranyl pyrophos 100.0 2.3E-68 7.8E-73 537.3 29.7 314 99-419 34-351 (360)
7 3nf2_A Putative polyprenyl syn 100.0 1.8E-67 6.2E-72 530.0 31.6 311 103-419 7-343 (352)
8 3aqb_B Component B of hexapren 100.0 1.7E-67 6E-72 525.8 30.3 313 101-420 6-325 (325)
9 3apz_A Geranyl diphosphate syn 100.0 2.3E-68 7.8E-73 536.8 23.7 319 102-420 11-348 (348)
10 4dhd_A Polyprenyl synthetase; 100.0 2.6E-66 8.9E-71 522.9 32.5 312 100-420 5-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 9E-66 3.1E-70 514.4 29.7 304 108-420 8-330 (330)
12 3lk5_A Geranylgeranyl pyrophos 100.0 8E-64 2.7E-68 508.0 34.2 325 95-419 15-372 (380)
13 3tc1_A Octaprenyl pyrophosphat 100.0 4.4E-64 1.5E-68 498.5 29.6 297 109-416 6-307 (315)
14 1v4e_A Octoprenyl-diphosphate 100.0 1.1E-63 3.7E-68 492.7 27.7 282 105-404 9-290 (299)
15 2e8v_A Geranylgeranyl pyrophos 100.0 4.8E-64 1.7E-68 503.6 23.4 299 112-417 10-339 (340)
16 2q80_A Geranylgeranyl pyrophos 100.0 6.8E-63 2.3E-67 487.6 24.4 290 116-419 2-296 (301)
17 2h8o_A Geranyltranstransferase 100.0 7.7E-62 2.6E-66 485.7 29.3 279 99-419 37-334 (335)
18 3uca_A Geranyltranstransferase 100.0 2.8E-62 9.4E-67 486.4 25.3 287 93-420 25-324 (324)
19 2qis_A Farnesyl pyrophosphate 100.0 2.2E-61 7.5E-66 489.8 31.8 305 110-419 44-373 (374)
20 1yhl_A Farnesyl pyrophosphate 100.0 2.2E-61 7.4E-66 488.4 31.7 293 125-419 34-361 (362)
21 3ts7_A Geranyltranstransferase 100.0 3.6E-61 1.2E-65 478.4 29.6 277 101-419 9-301 (324)
22 1rtr_A Geranyltranstransferase 100.0 1.5E-61 5.1E-66 477.9 26.6 273 108-420 9-293 (301)
23 4f62_A Geranyltranstransferase 100.0 6.2E-61 2.1E-65 475.4 30.9 277 101-419 5-294 (317)
24 3lsn_A Geranyltranstransferase 100.0 6.6E-61 2.3E-65 473.4 30.0 277 101-419 3-295 (304)
25 1uby_A FPS, farnesyl diphospha 100.0 1.3E-60 4.3E-65 483.1 31.9 294 125-420 57-367 (367)
26 1rqj_A Geranyltranstransferase 100.0 1.8E-61 6.1E-66 477.2 24.7 280 101-420 3-299 (299)
27 2ihi_A Pyrophosphate synthase; 100.0 4.5E-61 1.5E-65 489.8 27.4 321 94-419 32-395 (395)
28 3p8r_A Geranyltranstransferase 100.0 4.1E-61 1.4E-65 474.7 24.6 275 104-420 12-302 (302)
29 2her_A Fragment, farnesyl pyro 100.0 1.3E-61 4.3E-66 488.9 21.3 312 95-419 25-355 (368)
30 3p8l_A Geranyltranstransferase 100.0 6.4E-61 2.2E-65 472.9 25.7 273 107-418 16-302 (302)
31 3mav_A Farnesyl pyrophosphate 100.0 6.2E-60 2.1E-64 482.7 31.4 312 106-418 41-394 (395)
32 3lom_A Geranyltranstransferase 100.0 3.7E-60 1.3E-64 469.5 28.0 277 101-419 9-302 (313)
33 3m0g_A Farnesyl diphosphate sy 100.0 2.7E-60 9.3E-65 467.6 26.0 273 102-419 4-288 (297)
34 3pde_A Farnesyl-diphosphate sy 100.0 2.7E-60 9.2E-65 469.3 25.6 280 100-419 7-299 (309)
35 3dyh_A Farnesyl pyrophosphate 100.0 2.7E-60 9.3E-65 483.8 26.0 292 126-419 57-389 (390)
36 2ftz_A Geranyltranstransferase 100.0 3.5E-59 1.2E-63 457.0 29.3 265 109-418 15-284 (284)
37 3ipi_A Geranyltranstransferase 100.0 2E-59 6.8E-64 461.0 26.5 271 110-419 12-283 (295)
38 3llw_A Geranyltranstransferase 100.0 2.1E-57 7.1E-62 449.5 30.0 280 103-419 10-304 (311)
39 2q58_A Fragment, farnesyl pyro 100.0 1.8E-57 6.3E-62 460.2 20.6 283 127-419 60-359 (368)
40 3npk_A Geranyltranstransferase 100.0 6.3E-56 2.2E-60 435.2 27.5 266 110-417 7-284 (291)
41 2azj_A Geranylgeranyl pyrophos 100.0 1.5E-55 5.1E-60 432.5 25.5 263 105-419 15-280 (289)
42 2j1p_A Geranylgeranyl pyrophos 100.0 1.3E-54 4.6E-59 426.9 28.0 265 102-420 14-293 (293)
43 4fp4_A Polyprenyl synthetase; 100.0 5.6E-51 1.9E-55 397.9 12.8 220 101-335 6-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 1.5E-46 5.2E-51 366.1 24.0 205 100-314 3-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 1.4E-45 4.6E-50 359.3 25.6 208 95-315 3-223 (273)
46 3vj8_A Squalene synthase; farn 95.9 0.096 3.3E-06 51.9 13.5 145 232-402 112-256 (343)
47 4hd1_A Squalene synthase HPNC; 94.9 1.2 4.1E-05 42.8 17.4 131 241-402 107-237 (294)
48 3kb9_A EPI-isozizaene synthase 93.7 2.8 9.6E-05 41.6 17.6 92 229-320 175-269 (382)
49 3acx_A Dehydrosqualene synthas 93.4 2.1 7.2E-05 40.9 15.5 134 240-403 110-243 (293)
50 3lsn_A Geranyltranstransferase 77.6 6.2 0.00021 38.1 8.1 81 166-246 204-298 (304)
51 3v1v_A 2-MIB synthase, 2-methy 77.1 65 0.0022 32.5 16.1 105 229-346 253-363 (433)
52 3g4d_A (+)-delta-cadinene synt 75.8 70 0.0024 33.4 16.0 87 231-319 366-458 (554)
53 3n0f_A Isoprene synthase; terp 71.5 72 0.0025 33.3 14.8 87 232-319 365-456 (555)
54 4f62_A Geranyltranstransferase 70.3 11 0.00039 36.5 7.9 64 165-228 202-277 (317)
55 3uca_A Geranyltranstransferase 70.1 16 0.00055 35.5 9.0 64 165-228 231-306 (324)
56 1rtr_A Geranyltranstransferase 69.5 12 0.0004 36.0 7.8 64 165-228 198-273 (301)
57 3m0g_A Farnesyl diphosphate sy 67.0 15 0.00051 35.3 7.9 60 169-228 200-271 (297)
58 3ts7_A Geranyltranstransferase 64.3 17 0.00058 35.4 7.8 64 166-229 210-285 (324)
59 3aqb_A Component A of hexapren 64.2 7.4 0.00025 33.3 4.4 40 209-248 72-111 (147)
60 1ps1_A Pentalenene synthase; a 64.1 98 0.0034 29.2 16.4 109 229-347 132-244 (337)
61 3m00_A Aristolochene synthase; 62.1 89 0.003 32.6 13.2 86 231-319 362-453 (550)
62 3p8l_A Geranyltranstransferase 61.9 23 0.00079 34.0 8.2 63 165-227 206-280 (302)
63 2h8o_A Geranyltranstransferase 60.4 23 0.00079 34.6 8.0 64 165-228 242-317 (335)
64 3p8r_A Geranyltranstransferase 59.1 17 0.00058 35.0 6.7 61 168-228 212-284 (302)
65 3lom_A Geranyltranstransferase 58.3 25 0.00087 33.9 7.8 64 165-228 210-285 (313)
66 1di1_A Aristolochene synthase; 57.5 1.2E+02 0.0041 28.0 18.1 63 257-319 150-212 (300)
67 3ipi_A Geranyltranstransferase 52.5 52 0.0018 31.4 8.9 64 166-229 188-265 (295)
68 3pde_A Farnesyl-diphosphate sy 47.0 46 0.0016 32.0 7.5 61 166-226 206-278 (309)
69 3nf2_A Putative polyprenyl syn 41.7 1.9E+02 0.0065 28.1 11.2 54 281-346 63-116 (352)
70 3bny_A Aristolochene synthase; 41.4 2.2E+02 0.0076 26.4 17.5 63 257-319 164-226 (320)
71 1n1b_A (+)-bornyl diphosphate 40.4 1.8E+02 0.0063 30.1 11.4 104 232-347 362-472 (549)
72 3sdr_A Alpha-bisabolene syntha 40.1 1.7E+02 0.0058 32.0 11.5 103 232-347 626-738 (817)
73 3p5p_A Taxadiene synthase; cla 39.1 3.2E+02 0.011 29.6 13.3 86 232-319 567-658 (764)
74 3mzv_A Decaprenyl diphosphate 38.7 2.7E+02 0.0093 26.8 11.8 69 263-345 46-114 (341)
75 3rmg_A Octaprenyl-diphosphate 38.6 2.3E+02 0.0078 27.2 11.2 52 283-346 58-109 (334)
76 3llw_A Geranyltranstransferase 35.8 1.5E+02 0.0052 28.3 9.3 59 168-226 213-281 (311)
77 3oyr_A Trans-isoprenyl diphosp 31.2 1.8E+02 0.006 28.3 9.0 40 166-205 213-264 (345)
78 2q80_A Geranylgeranyl pyrophos 30.5 3.5E+02 0.012 25.5 12.3 49 286-346 39-87 (301)
79 4fp4_A Polyprenyl synthetase; 29.8 1.4E+02 0.0049 28.2 7.8 44 290-345 66-109 (285)
80 3mhs_B Protein SUS1; multi-pro 26.4 1.8E+02 0.0062 23.0 6.6 67 349-415 6-89 (96)
81 2e8v_A Geranylgeranyl pyrophos 25.6 4.5E+02 0.015 25.1 11.8 49 286-346 54-102 (340)
82 2azj_A Geranylgeranyl pyrophos 23.7 1.4E+02 0.0049 28.1 6.6 51 284-346 61-111 (289)
83 3npk_A Geranyltranstransferase 23.5 3.5E+02 0.012 25.5 9.3 63 166-228 196-268 (291)
84 4dhx_B Enhancer of yellow 2 tr 23.0 1.5E+02 0.0051 23.7 5.6 70 348-417 9-97 (101)
85 2ong_A 4S-limonene synthase; m 22.3 6.5E+02 0.022 25.8 16.0 87 232-319 356-447 (543)
86 1wmw_A Geranylgeranyl diphosph 21.8 2.2E+02 0.0076 27.2 7.7 52 282-345 49-100 (330)
87 3aqb_B Component B of hexapren 20.6 5.4E+02 0.019 24.3 12.1 53 282-346 54-106 (325)
88 4dhd_A Polyprenyl synthetase; 20.3 1.1E+02 0.0036 30.0 5.0 46 288-345 61-106 (358)
89 1v4e_A Octoprenyl-diphosphate 20.0 1.9E+02 0.0066 27.3 6.7 47 288-346 56-103 (299)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=7.2e-71 Score=553.19 Aligned_cols=321 Identities=31% Similarity=0.533 Sum_probs=272.6
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHH
Q 014706 93 RSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAE 172 (420)
Q Consensus 93 ~~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAa 172 (420)
..++++.+++..+.++++.|++.|.+.+++.+|.+.++++|.+..||||+||+|+++++++++ .. .+.+.++|+
T Consensus 19 ~~~~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g----~~--~~~~~~~A~ 92 (345)
T 3oyr_A 19 RKSGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRPLMTVAAARLAG----AD--NDHFQKLAA 92 (345)
T ss_dssp -CCCCSHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTTCCCHHHHHHHHHHHHTT----CC--SSTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999999888754 22 256789999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhh
Q 014706 173 IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQAS 252 (420)
Q Consensus 173 avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~ 252 (420)
++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||+++++..++++++++++++..++.||+.|+.
T Consensus 93 aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~ 172 (345)
T 3oyr_A 93 AVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLM 172 (345)
T ss_dssp HHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999988
Q ss_pred hccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccc
Q 014706 253 SLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDL 332 (420)
Q Consensus 253 ~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL 332 (420)
...+.++++++|++|+++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++||+++++.+|||.|+||
T Consensus 173 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl 252 (345)
T 3oyr_A 173 RSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDF 252 (345)
T ss_dssp TSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred cCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchh
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHhhh-ChHHHHHHHhhcC----CcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Q 014706 333 AKGNLTAPVIFALEK-EPKLREIIESEFC----ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 407 (420)
Q Consensus 333 ~eGk~TlP~l~ale~-~~~l~~~l~~~~~----~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 407 (420)
++||+|||++++++. +++.+..+...+. +++++++++++++++|+++++++.+++|.++|++.|+.||+++.++.
T Consensus 253 ~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 332 (345)
T 3oyr_A 253 REGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREA 332 (345)
T ss_dssp ----CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHH
T ss_pred hcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999997 5666666655443 56789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q 014706 408 LEDMVMFNLERF 419 (420)
Q Consensus 408 L~~l~~~~~~R~ 419 (420)
|..|++|+++|.
T Consensus 333 L~~la~~~~~R~ 344 (345)
T 3oyr_A 333 LEELADFAVSRR 344 (345)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 999999999996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=5.5e-70 Score=546.46 Aligned_cols=320 Identities=31% Similarity=0.507 Sum_probs=282.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHH
Q 014706 94 SPISLANIFEVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAE 172 (420)
Q Consensus 94 ~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAa 172 (420)
.|+++.+++..+.++++.|++.|.+.+.+. +|.+.++++|.+..||||+||+|+++++++++ .. .+.+.++|+
T Consensus 7 ~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g----~~--~~~~~~~A~ 80 (341)
T 3mzv_A 7 ATKPHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVG----YG--GPFHVHLAA 80 (341)
T ss_dssp --CHHHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTT----CC--CSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHH
Confidence 678999999999999999999999999988 89999999999999999999999999888653 32 257889999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhh
Q 014706 173 IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQAS 252 (420)
Q Consensus 173 avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~ 252 (420)
++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++|++.+++..+.++++++++++..++.||+.|+.
T Consensus 81 aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~ 160 (341)
T 3mzv_A 81 TVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLT 160 (341)
T ss_dssp HHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999988
Q ss_pred hccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccc
Q 014706 253 SLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDL 332 (420)
Q Consensus 253 ~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL 332 (420)
...+.++++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+||
T Consensus 161 ~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl 240 (341)
T 3mzv_A 161 AAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDF 240 (341)
T ss_dssp HTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHH
T ss_pred hccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCccc
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHhhh-ChHHHHHHHhhc----CCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Q 014706 333 AKGNLTAPVIFALEK-EPKLREIIESEF----CETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 407 (420)
Q Consensus 333 ~eGk~TlP~l~ale~-~~~l~~~l~~~~----~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 407 (420)
++||+|||++++++. ++..+..+...+ .+++++++++++++++|+++++++.+++|.++|++.|+.||+++.++.
T Consensus 241 ~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 320 (341)
T 3mzv_A 241 RERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQM 320 (341)
T ss_dssp HTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred ccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999998 444555554443 356789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q 014706 408 LEDMVMFNLERF 419 (420)
Q Consensus 408 L~~l~~~~~~R~ 419 (420)
|..|++|+++|.
T Consensus 321 L~~la~~~~~r~ 332 (341)
T 3mzv_A 321 LDDLADYVVERV 332 (341)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHHHHhcc
Confidence 999999999995
No 3
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.6e-69 Score=538.53 Aligned_cols=316 Identities=31% Similarity=0.457 Sum_probs=270.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHH
Q 014706 97 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEM 176 (420)
Q Consensus 97 ~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEl 176 (420)
++.+++..+.++++.|++.|.+.+++.+|.+.++++|.+..||||+||+|+++++++++ . ..+.+.++|+++||
T Consensus 5 ~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g----~--~~~~~~~~A~aiEl 78 (334)
T 3rmg_A 5 SISLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRNGKMMRPILVLLVARLYG----A--VTPATLHAAVSLEL 78 (334)
T ss_dssp HHHHHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC----CHHHHHHHHHHHHHS----C--CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----C--ChHHHHHHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999888763 2 24688999999999
Q ss_pred HHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccC
Q 014706 177 IHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD 256 (420)
Q Consensus 177 iH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~ 256 (420)
||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..++...++++++++++++..++.||+.|+....+
T Consensus 79 iH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~ 158 (334)
T 3rmg_A 79 LHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSN 158 (334)
T ss_dssp HHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999887766
Q ss_pred CCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCc
Q 014706 257 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGN 336 (420)
Q Consensus 257 ~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk 336 (420)
..+++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++ +++.+|||.|+||++||
T Consensus 159 ~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK 237 (334)
T 3rmg_A 159 HSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGK 237 (334)
T ss_dssp --CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTC
T ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCc
Confidence 67899999999999999999999999999999999999999999999999999999999999 68899999999999999
Q ss_pred ccHHHHHHhhh-Ch----HHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 014706 337 LTAPVIFALEK-EP----KLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDM 411 (420)
Q Consensus 337 ~TlP~l~ale~-~~----~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l 411 (420)
+|||++++++. ++ .+.+++.+...+++++++++++++++|+++++++.+++|.++|++.|+.||+++.++.|..|
T Consensus 238 ~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l 317 (334)
T 3rmg_A 238 LTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALRTY 317 (334)
T ss_dssp CCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999997 33 35555555555678899999999999999999999999999999999999999999999999
Q ss_pred HHHHhccC
Q 014706 412 VMFNLERF 419 (420)
Q Consensus 412 ~~~~~~R~ 419 (420)
++|+++|.
T Consensus 318 ~~~~~~R~ 325 (334)
T 3rmg_A 318 LDYVVARE 325 (334)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcc
Confidence 99999995
No 4
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1e-68 Score=536.02 Aligned_cols=316 Identities=28% Similarity=0.431 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014706 100 NIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 179 (420)
Q Consensus 100 ~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~ 179 (420)
+.++.+.++++.|++.|.+.+.+.+|.+.++++|.+..||||+||.|++++++ + |+....+.+.++|+++||||+
T Consensus 16 ~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~-~----g~~~~~~~~~~~A~aiEliH~ 90 (334)
T 3pko_A 16 RQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFST-F----GNAATPAQLQAGAAAIEILHV 90 (334)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHCCCCHHHHHHHHHHT-T----CSCCCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCCCCcHHHHHHHHHHH-H----cCCCCHHHHHHHHHHHHHHHH
Confidence 44667888999999999999999999999999999999999999999998776 3 321234678899999999999
Q ss_pred HHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhHHHHHhhhccCCC
Q 014706 180 ASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-LEVIKLISQVIKDFASGEIKQASSLFDCD 258 (420)
Q Consensus 180 AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~-~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~ 258 (420)
||||||||||+|++|||+||+|.+||+++|||+||||+++|++++++..+ +++++.+++++..++.||+.|+....+.+
T Consensus 91 asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~ 170 (334)
T 3pko_A 91 GTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYRED 170 (334)
T ss_dssp HHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999998765 88999999999999999999988777778
Q ss_pred CCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCccc
Q 014706 259 LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 338 (420)
Q Consensus 259 ~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~T 338 (420)
+++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+||++||+|
T Consensus 171 ~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T 250 (334)
T 3pko_A 171 ITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYS 250 (334)
T ss_dssp CCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCh-HHHHHHH-hhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014706 339 APVIFALEKEP-KLREIIE-SEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 416 (420)
Q Consensus 339 lP~l~ale~~~-~l~~~l~-~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 416 (420)
||++++++..+ ++++++. ....+++++++++++++++|+++++++++++|.++|++.|+.||+++.++.|..|+++++
T Consensus 251 lp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 330 (334)
T 3pko_A 251 LPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRLLL 330 (334)
T ss_dssp HHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999999854 6777774 334466789999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014706 417 ERFV 420 (420)
Q Consensus 417 ~R~~ 420 (420)
+|+.
T Consensus 331 ~R~~ 334 (334)
T 3pko_A 331 RRDH 334 (334)
T ss_dssp TCC-
T ss_pred hccC
Confidence 9973
No 5
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.3e-68 Score=534.50 Aligned_cols=317 Identities=32% Similarity=0.482 Sum_probs=292.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHH
Q 014706 98 LANIFEVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEM 176 (420)
Q Consensus 98 ~~~l~~~l~~~l~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEl 176 (420)
+.+++..+.++++.|++.|.+.+... +|.+.++++|++..||||+||.|++++++++ |.. .+.+.++|+++||
T Consensus 4 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~----g~~--~~~~~~~A~avEl 77 (342)
T 1wy0_A 4 YEELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAV----GGD--PLRAIYPAVAIEL 77 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTT----TSC--GGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHc----CCC--HHHHHHHHHHHHH
Confidence 34677889999999999999999887 8899999999999999999999999877654 433 2467899999999
Q ss_pred HHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHhHHHHHh
Q 014706 177 IHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQA 251 (420)
Q Consensus 177 iH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l-----~~~~v~~~ls~~~~~l~~Ge~~q~ 251 (420)
||+||||||||||+|++|||+||+|.+||+++|||+||||+++|++++++. .+.++++++++++..++.||+.|+
T Consensus 78 iH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl 157 (342)
T 1wy0_A 78 IHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDL 157 (342)
T ss_dssp HHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987 456899999999999999999998
Q ss_pred hhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCccc
Q 014706 252 SSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASD 331 (420)
Q Consensus 252 ~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~D 331 (420)
....+...++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|
T Consensus 158 ~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~D 237 (342)
T 1wy0_A 158 EFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSD 237 (342)
T ss_dssp HHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHH
T ss_pred HcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhH
Confidence 87776678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccHHHHHHhhh-ChHHHHHHHhhcCC---------------cchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q 014706 332 LAKGNLTAPVIFALEK-EPKLREIIESEFCE---------------TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHN 395 (420)
Q Consensus 332 L~eGk~TlP~l~ale~-~~~l~~~l~~~~~~---------------~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~ 395 (420)
|++||+|||++++++. .++.+..+...+.. ++++++++++++++|+++++++.+++|.++|++.
T Consensus 238 l~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~ 317 (342)
T 1wy0_A 238 IRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEA 317 (342)
T ss_dssp HHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 56677777766653 4578899999999999999999999999999999
Q ss_pred hccCCCChHHHHHHHHHHHHhccCC
Q 014706 396 LHCLPRSPFRVALEDMVMFNLERFV 420 (420)
Q Consensus 396 L~~lp~~~~~~~L~~l~~~~~~R~~ 420 (420)
|+.+|+++.++.|..+++++++|..
T Consensus 318 L~~l~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 318 LRILPKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp GGGSCCCHHHHHHHHHHHHTTTCC-
T ss_pred HHhCCCcHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999974
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.3e-68 Score=537.26 Aligned_cols=314 Identities=27% Similarity=0.468 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014706 99 ANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 178 (420)
Q Consensus 99 ~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH 178 (420)
.++...+.++++.|++.|.+.+...+|.+.++++|++..||||+||+|++++++++ |.. ..+.++++|+++||||
T Consensus 34 ~~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~----~~~-~~~~~~~~A~avEliH 108 (360)
T 3lmd_A 34 PELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAGGKRFRPMFALLASEFG----EKP-LSENVIKAAVVVEITH 108 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTS----SST-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCCCCcHHHHHHHHHHHHh----CCC-ChHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999877643 311 3467889999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCC
Q 014706 179 TASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCD 258 (420)
Q Consensus 179 ~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~ 258 (420)
+||||||||||+|++|||+||+|.+||+++|||+||||+++|++++++++ +++++++++++..++.||+.|+....+.
T Consensus 109 ~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ~ldl~~~~~~- 186 (360)
T 3lmd_A 109 LATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQMRETVGPRDT- 186 (360)
T ss_dssp HHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCTTS-
T ss_pred HHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHhccCCC-
Confidence 99999999999999999999999999999999999999999999999875 4899999999999999999998766555
Q ss_pred CCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCccc
Q 014706 259 LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 338 (420)
Q Consensus 259 ~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~T 338 (420)
+++++|++|+++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++|++++++.+|||.|+||++||+|
T Consensus 187 ~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T 266 (360)
T 3lmd_A 187 DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFT 266 (360)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCC
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCh----HHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 014706 339 APVIFALEKEP----KLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMF 414 (420)
Q Consensus 339 lP~l~ale~~~----~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~ 414 (420)
||++++++..+ ++++++.+...+++++++++++++++|+++++++++++|.++|++.|+.||+++.++.|..|++|
T Consensus 267 lp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~La~~ 346 (360)
T 3lmd_A 267 LPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATF 346 (360)
T ss_dssp HHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999743 34444444444567899999999999999999999999999999999999999999999999999
Q ss_pred HhccC
Q 014706 415 NLERF 419 (420)
Q Consensus 415 ~~~R~ 419 (420)
+++|.
T Consensus 347 ~~~R~ 351 (360)
T 3lmd_A 347 TVKRV 351 (360)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99995
No 7
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.8e-67 Score=530.03 Aligned_cols=311 Identities=27% Similarity=0.401 Sum_probs=282.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH-----------cCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHH
Q 014706 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIF-----------GAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLA 171 (420)
Q Consensus 103 ~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~-----------~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA 171 (420)
+.+..-.+.|+..|++.+++.+|.+.+++.|++ ..||||+||+|+++++++++ .. .+.++++|
T Consensus 7 ~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g----~~--~~~~~~~A 80 (352)
T 3nf2_A 7 ALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTG----AA--PEVGVPGA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTT----CC--GGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcC----CC--HHHHHHHH
Confidence 455555667889999999999999999999988 68999999999999888653 32 35778999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHhHHH
Q 014706 172 EIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENL---EVIKLISQVIKDFASGEI 248 (420)
Q Consensus 172 aavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~---~v~~~ls~~~~~l~~Ge~ 248 (420)
+++||||+||||||||||+|++|||+||+|.+||+++|||+||||++++++++++.+++ ++++++++++..++.||+
T Consensus 81 ~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~ 160 (352)
T 3nf2_A 81 VAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQA 160 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998876 789999999999999999
Q ss_pred HHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCC
Q 014706 249 KQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPA 328 (420)
Q Consensus 249 ~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~ 328 (420)
.|+....+.++++++|++|+++|||+||+++|++|++++|++++.++.+++||+++|+||||+||++||+++++.+|||.
T Consensus 161 ~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~ 240 (352)
T 3nf2_A 161 QDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQT 240 (352)
T ss_dssp HHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCT
T ss_pred HHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCc
Confidence 99887767688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHhhh-Ch---HHHHHHHhhc-------CCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Q 014706 329 ASDLAKGNLTAPVIFALEK-EP---KLREIIESEF-------CETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLH 397 (420)
Q Consensus 329 g~DL~eGk~TlP~l~ale~-~~---~l~~~l~~~~-------~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 397 (420)
|+||++||+|||++++++. +| ++..++.+.. .+++++++++++|+++|+++++++++++|.++|++.|+
T Consensus 241 g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~ 320 (352)
T 3nf2_A 241 WSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALD 320 (352)
T ss_dssp THHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 34 4555555432 35578999999999999999999999999999999999
Q ss_pred cCCC-ChHHHHHHHHHHHHhccC
Q 014706 398 CLPR-SPFRVALEDMVMFNLERF 419 (420)
Q Consensus 398 ~lp~-~~~~~~L~~l~~~~~~R~ 419 (420)
.+|+ ++.|+.|..|++|+++|.
T Consensus 321 ~lp~~~~~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 321 AVDMPDRVRDRFTALADFVVVRK 343 (352)
T ss_dssp TSCCCHHHHHHHHHHHHHHCC--
T ss_pred hCCCCcHHHHHHHHHHHHHHhcc
Confidence 9997 789999999999999995
No 8
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=1.7e-67 Score=525.77 Aligned_cols=313 Identities=29% Similarity=0.456 Sum_probs=287.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHH
Q 014706 101 IFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTA 180 (420)
Q Consensus 101 l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~A 180 (420)
+++.+.++++.|++.|.+.+...+|.+.++++|++..||||+||.|++++++++ |.+ .+.+.++|+++||||+|
T Consensus 6 ~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~----g~~--~~~~~~~A~avEliH~a 79 (325)
T 3aqb_B 6 YKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSGGKRVRPMFVLLSGFLN----DTQ--KDDLIRTAVSLELVHMA 79 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHTTS----SCC--CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC--hHHHHHHHHHHHHHHHH
Confidence 466788899999999999998888999999999999999999999999887754 433 35788999999999999
Q ss_pred HhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCC
Q 014706 181 SLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLE 260 (420)
Q Consensus 181 sLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t 260 (420)
|||||||||+|++|||+||+|.+||++.|||+||||+++|++++++..+.++++.+++++..++.||+.|+....+..++
T Consensus 80 sLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~ 159 (325)
T 3aqb_B 80 SLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVS 159 (325)
T ss_dssp HHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Confidence 99999999999999999999999999999999999999999999998889999999999999999999998776666789
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHH
Q 014706 261 LEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAP 340 (420)
Q Consensus 261 ~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP 340 (420)
+++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+||++||+|||
T Consensus 160 ~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p 239 (325)
T 3aqb_B 160 FTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYP 239 (325)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCh-HHHHHHH---hhcCC---cchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Q 014706 341 VIFALEKEP-KLREIIE---SEFCE---TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVM 413 (420)
Q Consensus 341 ~l~ale~~~-~l~~~l~---~~~~~---~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~ 413 (420)
++++++..+ +.+..+. +.+.. ++++++++++++++ +++++++.+++|.++|++.|+.+|+++.++.|..+++
T Consensus 240 ~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~ 318 (325)
T 3aqb_B 240 LMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHE 318 (325)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999733 2333443 33332 46788999999999 9999999999999999999999999999999999999
Q ss_pred HHhccCC
Q 014706 414 FNLERFV 420 (420)
Q Consensus 414 ~~~~R~~ 420 (420)
++++|..
T Consensus 319 ~~~~R~~ 325 (325)
T 3aqb_B 319 KMLKRVY 325 (325)
T ss_dssp HHTTTTC
T ss_pred HHHhCcC
Confidence 9999974
No 9
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=2.3e-68 Score=536.77 Aligned_cols=319 Identities=41% Similarity=0.656 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCC--CCchHHHHHHHHHHHHhhhhCC-----------ccccHHHH
Q 014706 102 FEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAG--GKRLRPALVFLVSRATAELVGL-----------KELTTKHR 168 (420)
Q Consensus 102 ~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~g--GKrlRp~Lvll~a~a~~~~~g~-----------~~~~~~~~ 168 (420)
++.+.++++.|++.|.+.+.+.+|.+.++++|.+..| |||+||.|+++++++++..... .+..+++.
T Consensus 11 ~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (348)
T 3apz_A 11 FSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQR 90 (348)
T ss_dssp TTTTHHHHHHHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHH
Confidence 3457778999999999999999999999999999877 9999999999988765421000 00113568
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHH
Q 014706 169 RLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEI 248 (420)
Q Consensus 169 ~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~ 248 (420)
++|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++|+..++.+.+.++++++++++..++.||+
T Consensus 91 ~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ 170 (348)
T 3apz_A 91 GIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGET 170 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCC
Q 014706 249 KQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPA 328 (420)
Q Consensus 249 ~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~ 328 (420)
.|+....+..+++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.
T Consensus 171 ~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~ 250 (348)
T 3apz_A 171 MEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGS 250 (348)
T ss_dssp HHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSC
T ss_pred HHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcc
Confidence 98765444467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCCh-----
Q 014706 329 ASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP----- 403 (420)
Q Consensus 329 g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~----- 403 (420)
|+||++||+|||++++++..|++++++.+.+.+++++++++++++++|+++++++++++|.++|++.|+.||.++
T Consensus 251 g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~ 330 (348)
T 3apz_A 251 LSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVK 330 (348)
T ss_dssp CHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHH
T ss_pred hhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccH
Confidence 999999999999999999988899999888877889999999999999999999999999999999999999875
Q ss_pred -HHHHHHHHHHHHhccCC
Q 014706 404 -FRVALEDMVMFNLERFV 420 (420)
Q Consensus 404 -~~~~L~~l~~~~~~R~~ 420 (420)
.++.|..|++++++|..
T Consensus 331 ~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 331 RSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 79999999999999974
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.6e-66 Score=522.91 Aligned_cols=312 Identities=27% Similarity=0.368 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014706 100 NIFEVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 178 (420)
Q Consensus 100 ~l~~~l~~~l~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH 178 (420)
.+...+...++.|++.|.+.+... +|.+.++++|++..||||+||+|+++++++++. . .+.++++|+++||||
T Consensus 5 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~----~--~~~~~~~A~aiEliH 78 (358)
T 4dhd_A 5 VVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSG----Q--WRPALPAAAIVELIH 78 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHS----C--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC----C--HHHHHHHHHHHHHHH
Confidence 344566667788999999988877 789999999999999999999999999887652 2 357789999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhHHHHHhhhc---
Q 014706 179 TASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-LEVIKLISQVIKDFASGEIKQASSL--- 254 (420)
Q Consensus 179 ~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~-~~v~~~ls~~~~~l~~Ge~~q~~~~--- 254 (420)
+||||||||||+|++|||+||+|.+||+++|||+||||+++|++++..... .++++++++++..++.||+.|+...
T Consensus 79 ~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~ 158 (358)
T 4dhd_A 79 NYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAG 158 (358)
T ss_dssp HHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSC
T ss_pred HHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 999999999999999999999999999999999999999999999977553 6899999999999999999998765
Q ss_pred --------cCC-CCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhC
Q 014706 255 --------FDC-DLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLG 325 (420)
Q Consensus 255 --------~~~-~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~G 325 (420)
.+. ++++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|
T Consensus 159 ~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~G 238 (358)
T 4dhd_A 159 RSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFG 238 (358)
T ss_dssp CCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcC
Confidence 344 77999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCcc-cHHHHHHhhh-ChHHHH----HHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccC
Q 014706 326 KPAASDLAKGNL-TAPVIFALEK-EPKLRE----IIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCL 399 (420)
Q Consensus 326 K~~g~DL~eGk~-TlP~l~ale~-~~~l~~----~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 399 (420)
||.|+||++||+ |||++++++. +++.++ .+.+...+++++++++++++++|+++++++++++|.++|++.|+.|
T Consensus 239 K~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~l 318 (358)
T 4dhd_A 239 KEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKI 318 (358)
T ss_dssp -CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999 9999999998 455444 4443334567899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccCC
Q 014706 400 PRSPFRVALEDMVMFNLERFV 420 (420)
Q Consensus 400 p~~~~~~~L~~l~~~~~~R~~ 420 (420)
|+++ .|..|++|+++|+.
T Consensus 319 p~~~---~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 319 PNNG---TLKELLDFIVAREY 336 (358)
T ss_dssp SSCH---HHHHHHHHHTTTTT
T ss_pred CCCH---HHHHHHHHHHhccc
Confidence 9876 89999999999963
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=9e-66 Score=514.40 Aligned_cols=304 Identities=26% Similarity=0.267 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhccc
Q 014706 108 DLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDV 187 (420)
Q Consensus 108 ~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDI 187 (420)
..+.|++.|.+.+...+|.+.++++|++..||||+||.|+++++++++ .. .+.+.++|+++||||+||||||||
T Consensus 8 ~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~----~~--~~~~~~~A~avEliH~asLihDDi 81 (330)
T 1wmw_A 8 IRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHG----AP--LEAGLEAATALELFQNWVLVHDDI 81 (330)
T ss_dssp HHHHHHHHHHHHTCCSSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTT----CC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC----CC--HHHHHHHHHHHHHHHHHHHHHccc
Confidence 445678888888887889999999999999999999999999888653 22 357789999999999999999999
Q ss_pred CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHhHHHHHhhh-ccC-CCCC
Q 014706 188 LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-----LEVIKLISQVIKDFASGEIKQASS-LFD-CDLE 260 (420)
Q Consensus 188 iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~-----~~v~~~ls~~~~~l~~Ge~~q~~~-~~~-~~~t 260 (420)
||+|++|||+||+|.+||++.|||+||||+++|++++++..+ .++++++++++..++.||+.|+.. ..+ .+++
T Consensus 82 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~ 161 (330)
T 1wmw_A 82 EDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLR 161 (330)
T ss_dssp HHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred ccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 999999999999999999999999999999999999987533 689999999999999999999887 666 6789
Q ss_pred HHHHHHHHhhccHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccH
Q 014706 261 LEEYLIKSYYKTASL-IAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTA 339 (420)
Q Consensus 261 ~~~Yl~~i~~KTa~L-~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~Tl 339 (420)
+++|++|+++|||+| |+++|++|++++|++++.. +++||.++|+||||+||++|++++++ +|||.|+||++||+||
T Consensus 162 ~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~ 238 (330)
T 1wmw_A 162 PEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTL 238 (330)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCH
Confidence 999999999999999 9999999999999998876 99999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhh-ChHHHHHHHhhcC----C--cchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc----cCCCChHHHHH
Q 014706 340 PVIFALEK-EPKLREIIESEFC----E--TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLH----CLPRSPFRVAL 408 (420)
Q Consensus 340 P~l~ale~-~~~l~~~l~~~~~----~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~----~lp~~~~~~~L 408 (420)
|++++++. .++.+..+...+. + ++++++++++++++|+++++++++++|.++|++.|+ .+|+++.++.|
T Consensus 239 p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~L 318 (330)
T 1wmw_A 239 ILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHL 318 (330)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 99999998 4456666665554 2 467899999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhccCC
Q 014706 409 EDMVMFNLERFV 420 (420)
Q Consensus 409 ~~l~~~~~~R~~ 420 (420)
..|++++++|..
T Consensus 319 ~~l~~~~~~R~~ 330 (330)
T 1wmw_A 319 RGLLAALVERRA 330 (330)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhccC
Confidence 999999999963
No 12
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=8e-64 Score=507.97 Aligned_cols=325 Identities=23% Similarity=0.320 Sum_probs=265.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhCCCChH---HHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHH
Q 014706 95 PISLANIFEVVAEDLQTLNQNLKSIVGAENPV---LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLA 171 (420)
Q Consensus 95 ~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~---l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA 171 (420)
+.++.++...|...|+.+-......+....|. +.+++.|++..||||+||+|+++++++++.........+.++++|
T Consensus 15 ~~~~~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~A 94 (380)
T 3lk5_A 15 DLDLDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAA 94 (380)
T ss_dssp SCCTTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHH
Confidence 44466677777777766555444433333443 667788888899999999999999987652100012346789999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCchhhh----------------cChHHHHHHhHHHHHHHHHHHHcCCc-----H
Q 014706 172 EIIEMIHTASLIHDDVLDESDMRRGQETVHQL----------------YGTRVAVLAGDFMFAQSSWYLANLEN-----L 230 (420)
Q Consensus 172 aavEliH~AsLIHDDIiD~s~~RRG~pt~h~~----------------~G~~~Ail~GD~Ll~~a~~~l~~l~~-----~ 230 (420)
+++||||+||||||||||+|++|||+||+|.+ ||++.|||+||||+++|++++++... .
T Consensus 95 aaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~ 174 (380)
T 3lk5_A 95 ASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALA 174 (380)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999997 69999999999999999999998642 3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh
Q 014706 231 EVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASL-IAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQ 309 (420)
Q Consensus 231 ~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L-~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQ 309 (420)
+++++++.+...++.||+.|+....+..+++++|++|+++|||+| |+.+|++|++++|++++.++.+++||+++|+|||
T Consensus 175 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQ 254 (380)
T 3lk5_A 175 RTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQ 254 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 567778888889999999998877666789999999999999999 8999999999999999999999999999999999
Q ss_pred HHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhh----ChHHHHHHHhhcC---CcchHHHHHHHHHhcCcHHHHH
Q 014706 310 IVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK----EPKLREIIESEFC---ETGSLDEAIKLVKTSGGIEEAQ 382 (420)
Q Consensus 310 I~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~----~~~l~~~l~~~~~---~~~~~~~i~~li~~~g~i~~a~ 382 (420)
|+||++|++++++.+|||.|+||++||+|||++++++. +|+.++.|...++ +++++++++++|+++|++++++
T Consensus 255 I~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~ 334 (380)
T 3lk5_A 255 LRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVE 334 (380)
T ss_dssp HHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHH
Confidence 99999999999999999999999999999999999997 3566666665554 4567899999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHhccC
Q 014706 383 ELAKEKANLAIHNLHCLPR-SPFRVALEDMVMFNLERF 419 (420)
Q Consensus 383 ~~a~~~~~~A~~~L~~lp~-~~~~~~L~~l~~~~~~R~ 419 (420)
+++++|.++|++.|+.+|. ++.|+.|..|++++..|.
T Consensus 335 ~~~~~~~~~A~~~L~~lp~~~~~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 335 QRISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERR 372 (380)
T ss_dssp HHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhh
Confidence 9999999999999999995 579999999999999875
No 13
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=4.4e-64 Score=498.49 Aligned_cols=297 Identities=28% Similarity=0.377 Sum_probs=247.5
Q ss_pred HHHHHHHHHHhhCC-CChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCcc-ccHHHHHHHHHHHHHHHHHhhhcc
Q 014706 109 LQTLNQNLKSIVGA-ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKE-LTTKHRRLAEIIEMIHTASLIHDD 186 (420)
Q Consensus 109 l~~v~~~l~~~~~~-~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~-~~~~~~~lAaavEliH~AsLIHDD 186 (420)
++.|++.|.+.+.. ..|.+.+ .|.+..||||+||+|++++++. +... ..+++.++|+++||||+|||||||
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~~--~y~~~~gGKrlRp~l~l~~~~~-----~~~~~~~~~~~~~A~aiEliH~asLiHDD 78 (315)
T 3tc1_A 6 LKAIQNKIASWIKEIESGFIDE--LFSKIGPSKMLRSKLMLALLNE-----KTDAILLDKALNLCTIVEMIQTASLLHDD 78 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHH--HHTTCCCCCCHHHHHHHTTCCT-----TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHHHHH--HHHhcCCcccHHHHHHHHHhcc-----CccccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 45677777777653 3444443 4667789999999999976551 2111 125667999999999999999999
Q ss_pred cCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHH
Q 014706 187 VLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLI 266 (420)
Q Consensus 187 IiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~ 266 (420)
|||+|++|||+||+|.+||+++|||+||||+++|++.+++.+ +++++++++++..++.||+.|+....+..+++++|++
T Consensus 79 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~ 157 (315)
T 3tc1_A 79 VIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWR 157 (315)
T ss_dssp TC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHH
T ss_pred CCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999887 8999999999999999999998877667889999999
Q ss_pred HHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 267 KSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 267 ~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
|+++|||+||+++|++|++++|++ .+.+++||.++|+||||+||++|++++++.+|||.|+||++||+|||++++++
T Consensus 158 ~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~ 234 (315)
T 3tc1_A 158 ILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYE 234 (315)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHT
T ss_pred HHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHH
Confidence 999999999999999999999998 68899999999999999999999999999999999999999999999999999
Q ss_pred h-ChHHHHHHHhhcC--CcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014706 347 K-EPKLREIIESEFC--ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 416 (420)
Q Consensus 347 ~-~~~l~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 416 (420)
. +|+.++.+...+. +++++++++++++++|+++++++++++|.++|++.|+.||+++.|+.|..|++|+.
T Consensus 235 ~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 235 KLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISRTF 307 (315)
T ss_dssp TSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC--
T ss_pred hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 8 6777777766655 45778999999999999999999999999999999999999999999999998764
No 14
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.1e-63 Score=492.72 Aligned_cols=282 Identities=26% Similarity=0.409 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhh
Q 014706 105 VAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIH 184 (420)
Q Consensus 105 l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIH 184 (420)
+.++++.|++.|.+.+....| ++++|++..||||+||.|++++++++ |.. ..+.+.++|+++||||+|||||
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~gGKrlRp~l~l~~~~~~----g~~-~~~~~~~~A~avEliH~asLiH 80 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP---EQIMKDLPLYGKMLRVRLSILSFKNR----GVE-IGEDAISSLAALELVHLASLLH 80 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCCCCCCHHHHHHHHHHHHH----TCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH---HHHHHHHhCCCCcHHHHHHHHHHHHc----CCC-ChhHHHHHHHHHHHHHHHHHhh
Confidence 566788899999888766556 89999999999999999999988875 331 1257789999999999999999
Q ss_pred cccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHH
Q 014706 185 DDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEY 264 (420)
Q Consensus 185 DDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Y 264 (420)
|||||+|++|||+||+|.+||+++|||+||||+++|++++++..+.++++++++++..++.||+.|+....+. +++++|
T Consensus 81 DDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~y 159 (299)
T 1v4e_A 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKP-ITKEEY 159 (299)
T ss_dssp HHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CCHHHH
T ss_pred CCCCCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCCC-CCHHHH
Confidence 9999999999999999999999999999999999999999998889999999999999999999998776655 899999
Q ss_pred HHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHH
Q 014706 265 LIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 344 (420)
Q Consensus 265 l~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~a 344 (420)
++|+++|||+||+++|++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|||.|+||++||+|||++++
T Consensus 160 ~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~a 235 (299)
T 1v4e_A 160 LRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTA 235 (299)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHH
Confidence 999999999999999999999999987 89999999999999999999999999 99999999999999999999999
Q ss_pred hhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChH
Q 014706 345 LEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPF 404 (420)
Q Consensus 345 le~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 404 (420)
++..+.+++++.+ +++++++++++++|+++++++.+++|.++|.+.|+.||+...
T Consensus 236 l~~~~~l~~~l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~~ 290 (299)
T 1v4e_A 236 MEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFVD 290 (299)
T ss_dssp HHHCHHHHHHHHT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC--
T ss_pred HHhChHHHHHHhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 9986666666644 578999999999999999999999999999999999998743
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=4.8e-64 Score=503.60 Aligned_cols=299 Identities=19% Similarity=0.276 Sum_probs=234.1
Q ss_pred HHHHHHHhhC---CCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcccC
Q 014706 112 LNQNLKSIVG---AENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVL 188 (420)
Q Consensus 112 v~~~l~~~~~---~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDIi 188 (420)
|++.+.+... ..+|.+.++++|++..||||+||+|++++++++ |.. .+.+.++|+++||||+|||||||||
T Consensus 10 v~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~----~~~--~~~~~~~A~avEliH~asLiHDDI~ 83 (340)
T 2e8v_A 10 IDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVM----NLP--KDQLAIVSQIVELLHNSSLLIDDIE 83 (340)
T ss_dssp HHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHH----CCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHHHHHHHhCccc
Confidence 6666665553 345789999999999999999999999877754 332 2567899999999999999999999
Q ss_pred CCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHH-----HHHHHHHHHHHHHhHHHHHhhhccCC---CCC
Q 014706 189 DESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLE-----VIKLISQVIKDFASGEIKQASSLFDC---DLE 260 (420)
Q Consensus 189 D~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~-----v~~~ls~~~~~l~~Ge~~q~~~~~~~---~~t 260 (420)
|+|++|||+||+|.+||+++|||+||||+++|++++++..+++ +++++++.+..++.||+.|+....+. .++
T Consensus 84 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t 163 (340)
T 2e8v_A 84 DNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPT 163 (340)
T ss_dssp TTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCC
T ss_pred cCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Confidence 9999999999999999999999999999999999999987655 88999999999999999998765443 579
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHH
Q 014706 261 LEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAP 340 (420)
Q Consensus 261 ~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP 340 (420)
+++|++|+++|||+||+++|++|++++|+++ ..+.+++||.++|+||||+||++|++++++.+|||.|+||++||+|||
T Consensus 164 ~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp 242 (340)
T 2e8v_A 164 QEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFP 242 (340)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHH
Confidence 9999999999999999999999999999987 578999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhChH---------HHHHHHhhcCCcchHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHH-----hccCCCCh--
Q 014706 341 VIFALEKEPK---------LREIIESEFCETGSLDEAIKLVK-TSGGIEEAQELAKEKANLAIHN-----LHCLPRSP-- 403 (420)
Q Consensus 341 ~l~ale~~~~---------l~~~l~~~~~~~~~~~~i~~li~-~~g~i~~a~~~a~~~~~~A~~~-----L~~lp~~~-- 403 (420)
++++++..+. +..++.....+++..++++++|+ ++|+++++++++++|.++|++. |+.||+++
T Consensus 243 ~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~ 322 (340)
T 2e8v_A 243 IVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDT 322 (340)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccc
Confidence 9999997432 44455443333333448999999 9999999999999999999999 99999998
Q ss_pred ---HHHHHHHHHHHHhc
Q 014706 404 ---FRVALEDMVMFNLE 417 (420)
Q Consensus 404 ---~~~~L~~l~~~~~~ 417 (420)
+|+.|..|++++.+
T Consensus 323 ~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 323 ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -----------------
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999865
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=6.8e-63 Score=487.59 Aligned_cols=290 Identities=21% Similarity=0.297 Sum_probs=249.4
Q ss_pred HHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 014706 116 LKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRR 195 (420)
Q Consensus 116 l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RR 195 (420)
+++.+.+.+|.+.++++|++..||||+||.|++++++++ |.+ .+.+.++|+++||||+||||||||||+|++||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~----~~~--~~~~~~~A~avEliH~asLiHDDi~D~s~~RR 75 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWL----KVP--EDKLQIIIEVTEMLHNASLLIDDIEDNSKLRR 75 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHH----CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEET
T ss_pred cccccCCCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHHHHHHHHccccCCCCCCC
Confidence 345666777889999999999999999999999877654 332 35678999999999999999999999999999
Q ss_pred CCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccC-CCCCHHHHHHHHhhccHH
Q 014706 196 GQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD-CDLELEEYLIKSYYKTAS 274 (420)
Q Consensus 196 G~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~-~~~t~~~Yl~~i~~KTa~ 274 (420)
|+||+|.+||+++|||+||||+++|++.+++.+++++++++++.+..++.||+.|+....+ ..+++++|++|+++|||+
T Consensus 76 G~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~ 155 (301)
T 2q80_A 76 GFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGG 155 (301)
T ss_dssp TEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHH
Confidence 9999999999999999999999999999999877788999999999999999999876444 367999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhCh---HH
Q 014706 275 LIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEP---KL 351 (420)
Q Consensus 275 L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~---~l 351 (420)
||+++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|||.|+||++||+|||++++++.+| ++
T Consensus 156 L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l 231 (301)
T 2q80_A 156 LFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQV 231 (301)
T ss_dssp HHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHH
Confidence 99999999999999874 489999999999999999999999999999999999999999999999999744 46
Q ss_pred HHHHHhhcCCcchHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhccC
Q 014706 352 REIIESEFCETGSLD-EAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERF 419 (420)
Q Consensus 352 ~~~l~~~~~~~~~~~-~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~ 419 (420)
...+..... +.++. +++++++++|+++++++.+++|.++|++.|+.+|.++. |..+++++..|.
T Consensus 232 ~~~l~~~~~-~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~~---L~~l~~~l~~~~ 296 (301)
T 2q80_A 232 QNILRQRTE-NIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPE---LVALVKHLSKMF 296 (301)
T ss_dssp HHHHHHTCC-CHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHTTC
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHh
Confidence 666655433 33444 49999999999999999999999999999999998874 888999987774
No 17
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=7.7e-62 Score=485.71 Aligned_cols=279 Identities=26% Similarity=0.339 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHH
Q 014706 99 ANIFEVVAEDLQTLNQNLKSIVGA--------ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRL 170 (420)
Q Consensus 99 ~~l~~~l~~~l~~v~~~l~~~~~~--------~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~l 170 (420)
.++.+.+..+++.|++.|.+.+.. .++.+.++++|.+..||||+||.|++++++++ |.. .+.+.++
T Consensus 37 ~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~----g~~--~~~~~~~ 110 (335)
T 2h8o_A 37 TNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALL----GGD--AEAGLHV 110 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHT----TCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC--HHHHHHH
Confidence 445566777888899999998866 46789999999999999999999999988765 333 3567899
Q ss_pred HHHHHHHHHHHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcC--C-----cHHHHHHHHHHH-
Q 014706 171 AEIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL--E-----NLEVIKLISQVI- 240 (420)
Q Consensus 171 AaavEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l--~-----~~~v~~~ls~~~- 240 (420)
|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||+++++. . ..++++.+++++
T Consensus 111 A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g 190 (335)
T 2h8o_A 111 GAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAG 190 (335)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhh
Confidence 99999999999999999 9999999999999999999999999999999999999987 1 246778888888
Q ss_pred -HHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhcc
Q 014706 241 -KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQ 319 (420)
Q Consensus 241 -~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~ 319 (420)
..++.||+.|+....+ .+++++|++|+++|||+||+++|++|++++|++++.++.+++||.++|+||||+||++|+++
T Consensus 191 ~~~~~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~g 269 (335)
T 2h8o_A 191 IGGMAGGQALDLAAEKK-APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTA 269 (335)
T ss_dssp TTSHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999876655 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccC
Q 014706 320 SAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCL 399 (420)
Q Consensus 320 ~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 399 (420)
+++.+|||.|+||++||.|||++++ ++++++.+++|.++|++.|+.|
T Consensus 270 d~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------le~a~~~a~~~~~~A~~~L~~l 316 (335)
T 2h8o_A 270 DAATMGKATGKDAARGKGTLVALRG---------------------------------EAWAREKLQEQVAEASELLAPY 316 (335)
T ss_dssp ----------------CCCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHhCCCcchHHhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999996 3579999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccC
Q 014706 400 PRSPFRVALEDMVMFNLERF 419 (420)
Q Consensus 400 p~~~~~~~L~~l~~~~~~R~ 419 (420)
|. .++.|..|++|+++|.
T Consensus 317 ~~--~~~~L~~l~~~i~~R~ 334 (335)
T 2h8o_A 317 GE--KAAILIAAARFIAERK 334 (335)
T ss_dssp GG--GGHHHHHHHHHHHC--
T ss_pred ch--hHHHHHHHHHHHHhcc
Confidence 85 6889999999999996
No 18
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.8e-62 Score=486.41 Aligned_cols=287 Identities=31% Similarity=0.413 Sum_probs=237.0
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHH
Q 014706 93 RSPISLANIFEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRR 169 (420)
Q Consensus 93 ~~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~ 169 (420)
.++.++.+++..+.++++.|++.|.+.+... +|.+.++++|.+..||||+||.|++++++++ |.+ .+.+.+
T Consensus 25 ~~~~~~~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~----g~~--~~~~~~ 98 (324)
T 3uca_A 25 KKRKTLEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIY----KSD--YKKILT 98 (324)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHHHHHTT----CSC--GGGGHH
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC--HHHHHH
Confidence 3455566677788889999999999999875 7889999999999999999999999887754 433 257789
Q ss_pred HHHHHHHHHHHHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC--c----HHHHHHHHHHH-
Q 014706 170 LAEIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N----LEVIKLISQVI- 240 (420)
Q Consensus 170 lAaavEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~--~----~~v~~~ls~~~- 240 (420)
+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||+.+++.. + .++++.++++.
T Consensus 99 ~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g 178 (324)
T 3uca_A 99 PAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAG 178 (324)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHh
Confidence 999999999999999999 99999999999999999999999999999999999998743 1 45677788775
Q ss_pred -HHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhcc
Q 014706 241 -KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQ 319 (420)
Q Consensus 241 -~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~ 319 (420)
..++.||+.|+....+..+++++|++|+++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++|+++
T Consensus 179 ~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~g 258 (324)
T 3uca_A 179 SDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVG 258 (324)
T ss_dssp TTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5789999999877666678999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccC
Q 014706 320 SAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCL 399 (420)
Q Consensus 320 ~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 399 (420)
+++.+|||.|+|+++||+|||+++++ +++++.+++|.++|++.|+.|
T Consensus 259 d~~~~GK~~g~Dl~egK~T~p~l~al---------------------------------~~a~~~a~~~~~~A~~~L~~l 305 (324)
T 3uca_A 259 NAKDLGKNVHKDQESNKNNYITIFGL---------------------------------EECKKKCVNITEECIEILSSI 305 (324)
T ss_dssp C-----------------CHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHhCCCcchHhhcCCccHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999975 478999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccCC
Q 014706 400 PRSPFRVALEDMVMFNLERFV 420 (420)
Q Consensus 400 p~~~~~~~L~~l~~~~~~R~~ 420 (420)
|++ ++.|..|++|+++|..
T Consensus 306 ~~~--~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 306 KGN--TEPLKVLTMKLLERKF 324 (324)
T ss_dssp SSC--CHHHHHHHHHHHHCCC
T ss_pred CCc--HHHHHHHHHHHHhccC
Confidence 975 4899999999999963
No 19
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=2.2e-61 Score=489.78 Aligned_cols=305 Identities=18% Similarity=0.146 Sum_probs=264.8
Q ss_pred HHHHHHHHHhhCC-----CChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccH----HHHHHHHHHHHHHHH
Q 014706 110 QTLNQNLKSIVGA-----ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTT----KHRRLAEIIEMIHTA 180 (420)
Q Consensus 110 ~~v~~~l~~~~~~-----~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~----~~~~lAaavEliH~A 180 (420)
..|++.+...++. ..+.+.++++|.. .||||+||+|+++++++++. ....++ .+.++|+++||||+|
T Consensus 44 ~~v~~~l~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~---~~~~~~~~~~~a~~~A~avEliH~a 119 (374)
T 2qis_A 44 QIVRVLTEDEMGHPEIGDAIARLKEVLEYNA-IGGKYNRGLTVVVAFRELVE---PRKQDADSLQRAWTVGWCVELLQAF 119 (374)
T ss_dssp HHHHHHHTTC--CGGGHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSC---GGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHhhc-CCCcchHHHHHHHHHHHhCC---CCccchHHHHHHHHHHHHHHHHHHH
Confidence 3455555555432 1346777888655 79999999999999887642 111112 467889999999999
Q ss_pred HhhhcccCCCCCCCCCCCchhhhcChH-HHHHHhHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHhHHHHHhhhc
Q 014706 181 SLIHDDVLDESDMRRGQETVHQLYGTR-VAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQASSL 254 (420)
Q Consensus 181 sLIHDDIiD~s~~RRG~pt~h~~~G~~-~Ail~GD~Ll~~a~~~l~~l-----~~~~v~~~ls~~~~~l~~Ge~~q~~~~ 254 (420)
|||||||||+|++|||+||+|.+||++ +||++||++++.+|.++++. ...++++++++++..++.||+.|+...
T Consensus 120 sLIHDDImD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~ 199 (374)
T 2qis_A 120 FLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTA 199 (374)
T ss_dssp HHHHHHHHTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHccccCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999 99999999999999998864 347899999999999999999998765
Q ss_pred cC--C---CCCHHHHHHHHhhccHHH-HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCC
Q 014706 255 FD--C---DLELEEYLIKSYYKTASL-IAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKP 327 (420)
Q Consensus 255 ~~--~---~~t~~~Yl~~i~~KTa~L-~~~a~~~gailag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~ 327 (420)
.. . .+++++|++|+++|||+| |+++|++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 200 ~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK- 278 (374)
T 2qis_A 200 PQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK- 278 (374)
T ss_dssp CTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-
T ss_pred cccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-
Confidence 43 2 379999999999999999 9999999999999 99999999999999999999999999999999999999
Q ss_pred CcccccCCcccHHHHHHhhh-ChHHHHHHHhhcCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChH
Q 014706 328 AASDLAKGNLTAPVIFALEK-EPKLREIIESEFCE--TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPF 404 (420)
Q Consensus 328 ~g~DL~eGk~TlP~l~ale~-~~~l~~~l~~~~~~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 404 (420)
.|+||++||+|||++++++. .++.++.+...++. ++++++++++++++|+.+++++++++|.++|++.|+.||+++.
T Consensus 279 ~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~~ 358 (374)
T 2qis_A 279 IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLP 358 (374)
T ss_dssp CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred chhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999998 56788888777754 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 014706 405 RVALEDMVMFNLERF 419 (420)
Q Consensus 405 ~~~L~~l~~~~~~R~ 419 (420)
++.|..+++++++|+
T Consensus 359 k~~L~~l~~~i~~R~ 373 (374)
T 2qis_A 359 PAVFLGLARKIYKRR 373 (374)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999999999996
No 20
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=2.2e-61 Score=488.38 Aligned_cols=293 Identities=17% Similarity=0.151 Sum_probs=258.4
Q ss_pred hHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccc-cHHHHH----HHHHHHHHHHHHhhhcccCCCCCCCCCCCc
Q 014706 125 PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKEL-TTKHRR----LAEIIEMIHTASLIHDDVLDESDMRRGQET 199 (420)
Q Consensus 125 p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~-~~~~~~----lAaavEliH~AsLIHDDIiD~s~~RRG~pt 199 (420)
+.+.++.+|.+ .||||+||+|+++++++++........ .+.+++ +|+++||||+||||||||||+|++|||+||
T Consensus 34 ~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s~~RRG~pt 112 (362)
T 1yhl_A 34 RYLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPC 112 (362)
T ss_dssp HHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEEC
T ss_pred HHHHHHHHhhc-CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Confidence 45667777766 799999999999999886521000011 012344 788999999999999999999999999999
Q ss_pred hhhhcCh--HHHHHHhHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHhHHHHHhhhc-----------c--CC--
Q 014706 200 VHQLYGT--RVAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQASSL-----------F--DC-- 257 (420)
Q Consensus 200 ~h~~~G~--~~Ail~GD~Ll~~a~~~l~~l-----~~~~v~~~ls~~~~~l~~Ge~~q~~~~-----------~--~~-- 257 (420)
+|.+||+ ++||++||||++++++++++. .+.++++++++++..++.||+.|+... . +.
T Consensus 113 ~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~ 192 (362)
T 1yhl_A 113 WYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDF 192 (362)
T ss_dssp GGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSC
T ss_pred HHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Confidence 9999999 589999999999999999875 357899999999999999999998765 2 22
Q ss_pred -CCCHHHHHHHHhhccHHH-HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccC
Q 014706 258 -DLELEEYLIKSYYKTASL-IAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAK 334 (420)
Q Consensus 258 -~~t~~~Yl~~i~~KTa~L-~~~a~~~gailag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~e 334 (420)
.+++++|++|+++|||+| |+++|++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+||++
T Consensus 193 ~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~e 271 (362)
T 1yhl_A 193 AEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIED 271 (362)
T ss_dssp TTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTT
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhc
Confidence 479999999999999999 9999999999999 88888999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHhhh-ChHHHHHHHhhcCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHH--HHHH
Q 014706 335 GNLTAPVIFALEK-EPKLREIIESEFCE--TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFR--VALE 409 (420)
Q Consensus 335 Gk~TlP~l~ale~-~~~l~~~l~~~~~~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~--~~L~ 409 (420)
||+|||++++++. +++.+..+...+.. ++++++++++++++|+++++++++++|.++|++.|+.||+++.+ +.|.
T Consensus 272 gK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~~~L~ 351 (362)
T 1yhl_A 272 AKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVA 351 (362)
T ss_dssp TCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 9999999999998 56777777776653 46789999999999999999999999999999999999999888 9999
Q ss_pred HHHHHHhccC
Q 014706 410 DMVMFNLERF 419 (420)
Q Consensus 410 ~l~~~~~~R~ 419 (420)
.|++++++|+
T Consensus 352 ~l~~~i~~R~ 361 (362)
T 1yhl_A 352 VVWEKTHKRK 361 (362)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhcc
Confidence 9999999996
No 21
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=3.6e-61 Score=478.39 Aligned_cols=277 Identities=27% Similarity=0.381 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHH
Q 014706 101 IFEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMI 177 (420)
Q Consensus 101 l~~~l~~~l~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEli 177 (420)
+.+.+....+.|++.|.+.++.. ++.+.++++|.+..||||+||+|+++++++++ .. .+.+.++|+++|||
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g----~~--~~~~~~~A~avEli 82 (324)
T 3ts7_A 9 LSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIG----VA--ADLLDGPACAVEFI 82 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHT----CC--GGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHH
Confidence 34466777888999999988764 67899999999999999999999999887653 33 25678999999999
Q ss_pred HHHHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC--c------HHHHHHHHHHH--HHHHh
Q 014706 178 HTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N------LEVIKLISQVI--KDFAS 245 (420)
Q Consensus 178 H~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~--~------~~v~~~ls~~~--~~l~~ 245 (420)
|+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+++++.. + .++++.+++++ ..++.
T Consensus 83 H~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~ 162 (324)
T 3ts7_A 83 HVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVG 162 (324)
T ss_dssp HHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999 99999999999999999999999999999999999999864 1 35677788775 67999
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhh
Q 014706 246 GEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 324 (420)
Q Consensus 246 Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~ 324 (420)
||..|+....+ .+++++|++|+++|||+||+++|++|++++| ++++..+.+++||.++|+||||+||++|++++++.+
T Consensus 163 GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~ 241 (324)
T 3ts7_A 163 GQAIDLASVGK-KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTL 241 (324)
T ss_dssp HHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred hHHHHHHccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 99999876654 7899999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred CCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChH
Q 014706 325 GKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPF 404 (420)
Q Consensus 325 GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 404 (420)
|||.|+|+++||+|||++++ ++++++.++++.++|++.|+.||++
T Consensus 242 GK~~g~Dl~egK~T~p~l~g---------------------------------le~a~~~a~~~~~~A~~~L~~l~~~-- 286 (324)
T 3ts7_A 242 GKTRGKDRDHNKPNYPALLG---------------------------------LSGAKEKAEEMHEAALESLAGFGPE-- 286 (324)
T ss_dssp -----------CCCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHTTTTCCGG--
T ss_pred CCCccchhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCcc--
Confidence 99999999999999999995 5689999999999999999999976
Q ss_pred HHHHHHHHHHHhccC
Q 014706 405 RVALEDMVMFNLERF 419 (420)
Q Consensus 405 ~~~L~~l~~~~~~R~ 419 (420)
++.|..|++|+++|+
T Consensus 287 ~~~L~~la~~~~~R~ 301 (324)
T 3ts7_A 287 ADLLRELARFIIQRQ 301 (324)
T ss_dssp GHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 789999999999996
No 22
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.5e-61 Score=477.90 Aligned_cols=273 Identities=27% Similarity=0.372 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHhhCC--CChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhc
Q 014706 108 DLQTLNQNLKSIVGA--ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHD 185 (420)
Q Consensus 108 ~l~~v~~~l~~~~~~--~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHD 185 (420)
..+.|++.|.+.+.. .++.+.++++|.+..||||+||+|+++++++++ .+ .+..+++|+++||||+||||||
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~avEliH~asLiHD 82 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLN----TE--YELGMKSAIALEMIHTYSLIHD 82 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTT----SC--GGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHHHHHHhC
Confidence 345688888888765 467899999999999999999999999888653 32 2456889999999999999999
Q ss_pred cc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcC------CcHHHHHHHHHHH--HHHHhHHHHHhhhcc
Q 014706 186 DV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL------ENLEVIKLISQVI--KDFASGEIKQASSLF 255 (420)
Q Consensus 186 DI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l------~~~~v~~~ls~~~--~~l~~Ge~~q~~~~~ 255 (420)
|| ||+|++|||+||+|.+||+++|||+||||+++||+++++. ...++++.+++++ ..++.||+.|+....
T Consensus 83 DiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~ 162 (301)
T 1rtr_A 83 DLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEG 162 (301)
T ss_dssp HSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred CchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccC
Confidence 99 9999999999999999999999999999999999999987 2356778888888 779999999987655
Q ss_pred CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCC
Q 014706 256 DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKG 335 (420)
Q Consensus 256 ~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eG 335 (420)
+ .+++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+++|
T Consensus 163 ~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~g 241 (301)
T 1rtr_A 163 Q-PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENN 241 (301)
T ss_dssp S-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred C-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcC
Confidence 4 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 014706 336 NLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFN 415 (420)
Q Consensus 336 k~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~ 415 (420)
|+|||+++++ +++++.+++|.++|++.|+.||+++.++.|..+++|+
T Consensus 242 K~T~p~l~al---------------------------------~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i 288 (301)
T 1rtr_A 242 KSTYVSLLGK---------------------------------DGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLF 288 (301)
T ss_dssp -CCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHHH
T ss_pred CCcHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999985 3678999999999999999999888899999999999
Q ss_pred hccCC
Q 014706 416 LERFV 420 (420)
Q Consensus 416 ~~R~~ 420 (420)
++|..
T Consensus 289 ~~R~~ 293 (301)
T 1rtr_A 289 YSRDH 293 (301)
T ss_dssp HCC--
T ss_pred HHhhc
Confidence 99963
No 23
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=6.2e-61 Score=475.38 Aligned_cols=277 Identities=27% Similarity=0.379 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014706 101 IFEVVAEDLQTLNQNLKSIVGAE--NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 178 (420)
Q Consensus 101 l~~~l~~~l~~v~~~l~~~~~~~--~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH 178 (420)
+.+.+....+.|++.|.+.++.. ++.+.++++|.+..||||+||+|++++++++ |.. .+...++|+++||||
T Consensus 5 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~----g~~--~~~~~~~A~avEliH 78 (317)
T 4f62_A 5 LKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLV----GDI--SSLTDASAAALESIH 78 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHH----SCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHH
Confidence 44566777888999999998875 6789999999999999999999999888765 333 367899999999999
Q ss_pred HHHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC--c----HHHHHHHHHHH--HHHHhHHH
Q 014706 179 TASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N----LEVIKLISQVI--KDFASGEI 248 (420)
Q Consensus 179 ~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~--~----~~v~~~ls~~~--~~l~~Ge~ 248 (420)
+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+++++.. + .++++.+++++ ..++.||+
T Consensus 79 ~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~ 158 (317)
T 4f62_A 79 AYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQM 158 (317)
T ss_dssp HHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 999999999 99999999999999999999999999999999999999863 2 35667777766 36899999
Q ss_pred HHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCC
Q 014706 249 KQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKP 327 (420)
Q Consensus 249 ~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~ 327 (420)
.|+.... ..+++++|++|+++|||+||+++|++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|||
T Consensus 159 lDl~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~ 237 (317)
T 4f62_A 159 IDLSSEN-KNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKT 237 (317)
T ss_dssp HHHHTSS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHhccC-CCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCC
Confidence 9987653 35899999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred CcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Q 014706 328 AASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 407 (420)
Q Consensus 328 ~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 407 (420)
.|+|+++||+|||++++ ++++++.+++|.++|++.|+.||+ .++.
T Consensus 238 ~g~Dl~egK~T~p~l~g---------------------------------le~a~~~a~~~~~~A~~~L~~l~~--~~~~ 282 (317)
T 4f62_A 238 QFSDAEANKATYPKLLG---------------------------------LDGAKALVVRLHEQAIAQISEFGD--KSQP 282 (317)
T ss_dssp -------CCCCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHGGGGG--GGHH
T ss_pred cchHHhcCCCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCch--hHHH
Confidence 99999999999999996 458999999999999999999996 5899
Q ss_pred HHHHHHHHhccC
Q 014706 408 LEDMVMFNLERF 419 (420)
Q Consensus 408 L~~l~~~~~~R~ 419 (420)
|..|++|+++|.
T Consensus 283 L~~l~~~~~~R~ 294 (317)
T 4f62_A 283 LTDLANYIIDRN 294 (317)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHhc
Confidence 999999999996
No 24
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=6.6e-61 Score=473.36 Aligned_cols=277 Identities=29% Similarity=0.403 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHH
Q 014706 101 IFEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMI 177 (420)
Q Consensus 101 l~~~l~~~l~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEli 177 (420)
+.+.+....+.|++.|.+.++.. ++.+.++++|.+..||||+||.|++++++++ |.+ .+.+.++|+++|||
T Consensus 3 ~~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~----g~~--~~~~~~~A~aiEli 76 (304)
T 3lsn_A 3 LTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEAL----GGK--PEQANGAACAVELI 76 (304)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHT----TCC--GGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHH
Confidence 34456677788999999999875 4789999999999999999999999888765 333 25678999999999
Q ss_pred HHHHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC----c----HHHHHHHHHHHH--HHHh
Q 014706 178 HTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE----N----LEVIKLISQVIK--DFAS 245 (420)
Q Consensus 178 H~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~----~----~~v~~~ls~~~~--~l~~ 245 (420)
|+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+++++.. + .++++.+++++. .++.
T Consensus 77 H~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 156 (304)
T 3lsn_A 77 HAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVG 156 (304)
T ss_dssp HHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhH
Confidence 9999999999 99999999999999999999999999999999999999864 2 356777888774 4999
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhh
Q 014706 246 GEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGV-DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 324 (420)
Q Consensus 246 Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~-~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~ 324 (420)
||..|+....+ .+++++|++|+++|||+||+++|++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+
T Consensus 157 GQ~lDl~~~~~-~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~ 235 (304)
T 3lsn_A 157 GQAIDLGSVGL-KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATL 235 (304)
T ss_dssp HHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHh
Confidence 99999876544 58999999999999999999999999999999 88899999999999999999999999999999999
Q ss_pred CCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChH
Q 014706 325 GKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPF 404 (420)
Q Consensus 325 GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 404 (420)
|||.|+|+++||+|||++++ ++++++.++++.++|++.|+.||+ .
T Consensus 236 GK~~g~Dl~egK~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~--~ 280 (304)
T 3lsn_A 236 GKRQGADIARDKPTYPALLG---------------------------------LAAAKEYALELRDQALHALRPFDA--A 280 (304)
T ss_dssp ------------CCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHTTTSCG--G
T ss_pred CCCcccHHhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCch--h
Confidence 99999999999999999995 457999999999999999999996 4
Q ss_pred HHHHHHHHHHHhccC
Q 014706 405 RVALEDMVMFNLERF 419 (420)
Q Consensus 405 ~~~L~~l~~~~~~R~ 419 (420)
++.|..|++|+++|.
T Consensus 281 ~~~L~~l~~~~~~R~ 295 (304)
T 3lsn_A 281 AEPLRELARYIVERR 295 (304)
T ss_dssp GHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999995
No 25
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.3e-60 Score=483.08 Aligned_cols=294 Identities=18% Similarity=0.144 Sum_probs=262.1
Q ss_pred hHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhC-CccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhh
Q 014706 125 PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVG-LKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL 203 (420)
Q Consensus 125 p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g-~~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~ 203 (420)
+.+.++++|.+ .||||+||+|+++++++++...+ ..+..+.+.++|+++||||+||||||||||+|++|||+||+|.+
T Consensus 57 ~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~ 135 (367)
T 1uby_A 57 ARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWYKK 135 (367)
T ss_dssp HHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGS
T ss_pred HHHHHHHhhhc-CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHHHHHHHHHHHhCcccCCCCCCCCCCChhhc
Confidence 35777888776 79999999999999887641000 01111246889999999999999999999999999999999999
Q ss_pred cChH-HHHHHhHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHhHHHHHhhhccCC-----CCCHHHHHHHHhhcc
Q 014706 204 YGTR-VAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQASSLFDC-----DLELEEYLIKSYYKT 272 (420)
Q Consensus 204 ~G~~-~Ail~GD~Ll~~a~~~l~~l-----~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~-----~~t~~~Yl~~i~~KT 272 (420)
||++ ++|+.||++++.+++++++. ...++++++++++..++.||+.|+...... .+++++|++|+++||
T Consensus 136 ~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KT 215 (367)
T 1uby_A 136 EGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKT 215 (367)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCc
Confidence 9999 89999999999999999874 347899999999999999999998765432 579999999999999
Q ss_pred HHH-HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhh-Ch
Q 014706 273 ASL-IAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EP 349 (420)
Q Consensus 273 a~L-~~~a~~~gailag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~-~~ 349 (420)
|+| |+++|++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+||++||+|||++++++. ++
T Consensus 216 a~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~ 294 (367)
T 1uby_A 216 AFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTP 294 (367)
T ss_dssp HHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCchHHHHHHHHhCCH
Confidence 999 9999999999999 89999999999999999999999999999999999999 99999999999999999998 67
Q ss_pred HHHHHHHhhcCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhccCC
Q 014706 350 KLREIIESEFCE--TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERFV 420 (420)
Q Consensus 350 ~l~~~l~~~~~~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 420 (420)
+.++.+...++. ++++++++++++++|+.+++++++++|.++|++.|+.+|+++.++.|..+++++++|+.
T Consensus 295 ~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 295 EQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 888888877754 46789999999999999999999999999999999999999999999999999999973
No 26
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=1.8e-61 Score=477.15 Aligned_cols=280 Identities=28% Similarity=0.371 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHH
Q 014706 101 IFEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMI 177 (420)
Q Consensus 101 l~~~l~~~l~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEli 177 (420)
+.+.+..+++.|++.|.+.+... ++.+.++++|.+..||||+||.|++++++++ |.+ .+.+.++|+++|||
T Consensus 3 ~~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~----g~~--~~~~~~~A~avEli 76 (299)
T 1rqj_A 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMF----GVS--TNTLDAPAAAVECI 76 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHT----TCC--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHH
Confidence 34566777888999999988764 6789999999999999999999999988765 332 35678999999999
Q ss_pred HHHHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcC-----C---cHHHHHHHHHHH--HHHHh
Q 014706 178 HTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL-----E---NLEVIKLISQVI--KDFAS 245 (420)
Q Consensus 178 H~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l-----~---~~~v~~~ls~~~--~~l~~ 245 (420)
|+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+++++. + ..++++.+++++ ..++.
T Consensus 77 H~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 156 (299)
T 1rqj_A 77 HAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCG 156 (299)
T ss_dssp HHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999 9999999999999999999999999999999999999985 1 235677777776 68999
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhh
Q 014706 246 GEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIF-SGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 324 (420)
Q Consensus 246 Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gail-ag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~ 324 (420)
||+.|+....+ .+++++|++|+++|||+||+++|++|+++ +|++++..+.+++||.++|+||||+||++|++++++.+
T Consensus 157 GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~ 235 (299)
T 1rqj_A 157 GQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATL 235 (299)
T ss_dssp HHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHhccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 99999876555 78999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCC-Ch
Q 014706 325 GKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPR-SP 403 (420)
Q Consensus 325 GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~-~~ 403 (420)
|||.|+|+++||+|||++++++ ++++.+++|.++|++.|+.+|. ++
T Consensus 236 GK~~g~Dl~~gK~T~p~l~~l~---------------------------------~a~~~~~~~~~~A~~~L~~l~~~~~ 282 (299)
T 1rqj_A 236 GKRQGADQQLGKSTYPALLGLE---------------------------------QARKKARDLIDDARQSLKQLAEQSL 282 (299)
T ss_dssp SSCTTHHHHHTCCCHHHHHCHH---------------------------------HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCChhhHHHcCCCcHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999999999999864 5788999999999999999987 44
Q ss_pred HHHHHHHHHHHHhccCC
Q 014706 404 FRVALEDMVMFNLERFV 420 (420)
Q Consensus 404 ~~~~L~~l~~~~~~R~~ 420 (420)
.++.|..|++|+++|..
T Consensus 283 ~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 283 DTSALEALADYIIQRNK 299 (299)
T ss_dssp CCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 78999999999999963
No 27
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=4.5e-61 Score=489.79 Aligned_cols=321 Identities=18% Similarity=0.160 Sum_probs=254.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHH
Q 014706 94 SPISLANIFEVVAEDLQTLNQNLKSIVGAEN------PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKH 167 (420)
Q Consensus 94 ~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~------p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~ 167 (420)
....|.++|+.+..++.+ .+.....+.. +.+.++++|.. .||||+||+|+++++++++.........+.+
T Consensus 32 ~~~~f~~~~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a 107 (395)
T 2ihi_A 32 GLAFFRNMYDKYRDAFLS---HLNEYSLEEEIKEHISKYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKA 107 (395)
T ss_dssp ---CTTTTHHHHHHHHHH---HHHTSSCCHHHHHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHhhCCCChhhhhhHHHHHHHHHHhhc-cCcccHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 345577777777766433 4443211111 33556677766 9999999999999988764210000112467
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHH--HHHHhHHHHHHHHHHHHcC-C----cHHHHHHHHHHH
Q 014706 168 RRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRV--AVLAGDFMFAQSSWYLANL-E----NLEVIKLISQVI 240 (420)
Q Consensus 168 ~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~--Ail~GD~Ll~~a~~~l~~l-~----~~~v~~~ls~~~ 240 (420)
.++|+++||||+||||||||||+|++|||+||||+.||++. ||+.||+|++.++.++++. . ..++++++++++
T Consensus 108 ~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~ 187 (395)
T 2ihi_A 108 ACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDAT 187 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999998 9999999999999998763 1 268899999999
Q ss_pred HHHHhHHHHHhh-h---------------c----cCC----CCCHHHHHHHHhhccHHH-HHHHHHHHHHhcCCChHH--
Q 014706 241 KDFASGEIKQAS-S---------------L----FDC----DLELEEYLIKSYYKTASL-IAASTKGAAIFSGVDGSL-- 293 (420)
Q Consensus 241 ~~l~~Ge~~q~~-~---------------~----~~~----~~t~~~Yl~~i~~KTa~L-~~~a~~~gailag~~~~~-- 293 (420)
..++.||..|+. + . ... .+++++|++|+++|||+| |.++|++|++++|++++.
T Consensus 188 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~ 267 (395)
T 2ihi_A 188 LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLI 267 (395)
T ss_dssp HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTH
T ss_pred HHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHH
Confidence 999999999982 1 1 111 578999999999999999 999999999999999887
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhh-ChHHHHHHHhhcC--CcchHHHHHH
Q 014706 294 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIESEFC--ETGSLDEAIK 370 (420)
Q Consensus 294 ~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~-~~~l~~~l~~~~~--~~~~~~~i~~ 370 (420)
.+.+++||.++|+||||+||++|++++++.+|| .|+||++||+|||++++++. +|+.++.|...+. ++++++++++
T Consensus 268 ~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~ 346 (395)
T 2ihi_A 268 YKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDS 346 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999 99999999999999999998 7888888877765 3467899999
Q ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhccC
Q 014706 371 LVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERF 419 (420)
Q Consensus 371 li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~ 419 (420)
+++++|++++++++++++.++|++.|+.+|+++.++.|..+++++++|.
T Consensus 347 l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 347 LYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC-----
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999984
No 28
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=4.1e-61 Score=474.67 Aligned_cols=275 Identities=28% Similarity=0.407 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHH
Q 014706 104 VVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTA 180 (420)
Q Consensus 104 ~l~~~l~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~A 180 (420)
.+...++.|++.|.+.+... ++.+.++++|.+..||||+||.|++++++++ |.+ .+...++|+++||||+|
T Consensus 12 ~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~----g~~--~~~~~~~A~aiEliH~a 85 (302)
T 3p8r_A 12 ALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQML----GCE--LSDLDTPASAVECIHAY 85 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTT----TCC--GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHHHH
Confidence 45667788898898888664 5789999999999999999999999887754 433 35678999999999999
Q ss_pred Hhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC--c------HHHHHHHHHHH--HHHHhHHH
Q 014706 181 SLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N------LEVIKLISQVI--KDFASGEI 248 (420)
Q Consensus 181 sLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~--~------~~v~~~ls~~~--~~l~~Ge~ 248 (420)
||||||| ||+|++|||+||+|.+||+++|||+||||++++|+++++.. + .++++.+++++ ..++.||.
T Consensus 86 sLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~ 165 (302)
T 3p8r_A 86 SLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQA 165 (302)
T ss_dssp HHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHH
Confidence 9999999 99999999999999999999999999999999999999874 1 24677777776 57899999
Q ss_pred HHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCC
Q 014706 249 KQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKP 327 (420)
Q Consensus 249 ~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~ 327 (420)
.|+... +..+++++|++|+++|||+||+++|++|++++| ++++..+.+++||+++|+||||+||++|++++++.+|||
T Consensus 166 lDl~~~-~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~ 244 (302)
T 3p8r_A 166 LDLAAE-NRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKP 244 (302)
T ss_dssp HHHHTT-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHcc-CCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC
Confidence 998765 357899999999999999999999999999999 888889999999999999999999999999999999999
Q ss_pred CcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Q 014706 328 AASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 407 (420)
Q Consensus 328 ~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 407 (420)
.|+|+++||+|||+++++ +++++.+++|.++|++.|+.||++ ++.
T Consensus 245 ~g~Dl~egK~T~p~l~~l---------------------------------~~a~~~a~~~~~~A~~~L~~l~~~--~~~ 289 (302)
T 3p8r_A 245 QGSDQELNKSTYPALLGL---------------------------------EGAQQKAHTLLQEALLALEAIPYN--TEH 289 (302)
T ss_dssp --------CCCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHTTCSSC--THH
T ss_pred cchHHhcCCchHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhCCcc--HHH
Confidence 999999999999999964 589999999999999999999986 789
Q ss_pred HHHHHHHHhccCC
Q 014706 408 LEDMVMFNLERFV 420 (420)
Q Consensus 408 L~~l~~~~~~R~~ 420 (420)
|..|++|+++|..
T Consensus 290 L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 290 LEEFARYVVERKN 302 (302)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999999973
No 29
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=1.3e-61 Score=488.90 Aligned_cols=312 Identities=16% Similarity=0.135 Sum_probs=265.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhCCC-C-----hHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHH
Q 014706 95 PISLANIFEVVAEDLQTLNQNLKSIVGAE-N-----PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHR 168 (420)
Q Consensus 95 ~~~~~~l~~~l~~~l~~v~~~l~~~~~~~-~-----p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~ 168 (420)
...|...++.+..++.+ .+.....+. . +.+.++..|. ..||||+||+|+++++++++.. ..+..+.+.
T Consensus 25 ~~~f~~~~~~l~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~y~-~~GGKrlRp~l~l~~~~~~g~~--~~~~~~~~~ 98 (368)
T 2her_A 25 YTDFINYYDKFKVIVYN---VLKKLPLNDEIRKPVIEYYLNCIDYN-VKKGKHIRGKILVLISSLSSAY--SNIKRDSIY 98 (368)
T ss_dssp CTTGGGTHHHHHHHHHT---TCCCCTTSCCTTTTHHHHHHHHHHHH-TTSSTTTTTC-CHHHHTTTTCC--CSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHhCCCCcchhhhHHHHHHHHHHHh-hCCCCccchHHHHHHHHHhCCC--CcccHHHHH
Confidence 35566777777666433 333322222 2 3344555554 5999999999999988765321 112346788
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHH---HHHHHHHHcC-C---cHHHHHHHHHHHH
Q 014706 169 RLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMF---AQSSWYLANL-E---NLEVIKLISQVIK 241 (420)
Q Consensus 169 ~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll---~~a~~~l~~l-~---~~~v~~~ls~~~~ 241 (420)
++|+++||||+||||||||||+|++|||+||||.+||+.+|||+||+|+ +++++++++. . ..++++++++++.
T Consensus 99 ~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~ 178 (368)
T 2her_A 99 LLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIF 178 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 8888887763 2 2478999999999
Q ss_pred HHHhHHHHHhhhccCC-CCCH-HHHHHHHhhccHHH-HHHHHHHHHHhcCCChHH--HHHHHHHHHHHHHHHhHHhhHhh
Q 014706 242 DFASGEIKQASSLFDC-DLEL-EEYLIKSYYKTASL-IAASTKGAAIFSGVDGSL--SKQMYEYGRNLGLSFQIVDDILD 316 (420)
Q Consensus 242 ~l~~Ge~~q~~~~~~~-~~t~-~~Yl~~i~~KTa~L-~~~a~~~gailag~~~~~--~~~l~~~G~~lGiafQI~DDllD 316 (420)
.++.||+.|+...... ..+. ++|++|+++|||+| |++||++|++++|++++. .+.+++||.++|+||||+||++|
T Consensus 179 ~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD 258 (368)
T 2her_A 179 FTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSD 258 (368)
T ss_dssp HHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765432 3344 99999999999999 999999999999999887 89999999999999999999999
Q ss_pred hccchhhhCCCCcccccCCcccHHHHHHhhh-ChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q 014706 317 FTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHN 395 (420)
Q Consensus 317 ~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~-~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~ 395 (420)
++ .+|| .|+||++||+|||++++++. +|+.++.|...++.+. ++++++++++|+++++++++++|.++|++.
T Consensus 259 ~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~ 331 (368)
T 2her_A 259 YL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKL 331 (368)
T ss_dssp HH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 99 7899 99999999999999999998 7889999988887665 999999999999999999999999999999
Q ss_pred hccCCCChHHHHHHHHHHHHhccC
Q 014706 396 LHCLPRSPFRVALEDMVMFNLERF 419 (420)
Q Consensus 396 L~~lp~~~~~~~L~~l~~~~~~R~ 419 (420)
|+.+|+++.|+.|..|++++.+++
T Consensus 332 L~~lp~~~~k~~L~~l~~~i~~~~ 355 (368)
T 2her_A 332 VKDITDDSLQKVFIHLIHQISELI 355 (368)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 30
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=6.4e-61 Score=472.86 Aligned_cols=273 Identities=27% Similarity=0.379 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHHhhCC--CChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhh
Q 014706 107 EDLQTLNQNLKSIVGA--ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIH 184 (420)
Q Consensus 107 ~~l~~v~~~l~~~~~~--~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIH 184 (420)
.+++.|++.|.+.+.. .+|.+.++++|.+..||||+||.|++++++++ |.+ ..++..++|+++||||+|||||
T Consensus 16 ~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~----g~~-~~~~~~~~A~avEliH~asLIH 90 (302)
T 3p8l_A 16 QHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAF----QKE-METQDYQVAASLEMIHTYSLIH 90 (302)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT----TCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777664 46889999999999999999999999888765 333 2237889999999999999999
Q ss_pred ccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc-----HHHHHHHHHHH--HHHHhHHHHHhhhcc
Q 014706 185 DDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-----LEVIKLISQVI--KDFASGEIKQASSLF 255 (420)
Q Consensus 185 DDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~-----~~v~~~ls~~~--~~l~~Ge~~q~~~~~ 255 (420)
||| ||+|++|||+||+|.+||+++|||+||||+++||+.+++... .++++.+++++ ..++.||+.|+....
T Consensus 91 DDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~ 170 (302)
T 3p8l_A 91 DDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEK 170 (302)
T ss_dssp HHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred CCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccC
Confidence 999 999999999999999999999999999999999999998531 35677788776 678999999876654
Q ss_pred CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCC
Q 014706 256 DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKG 335 (420)
Q Consensus 256 ~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eG 335 (420)
. .+++++|.+|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+|+++|
T Consensus 171 ~-~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~eg 249 (302)
T 3p8l_A 171 V-SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALN 249 (302)
T ss_dssp S-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------------
T ss_pred C-CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcC
Confidence 3 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCC---ChHHHHHHHHH
Q 014706 336 NLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPR---SPFRVALEDMV 412 (420)
Q Consensus 336 k~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~---~~~~~~L~~l~ 412 (420)
|+|||++++++ .+++.++++.++|++.|+.||+ ++.++.|..|+
T Consensus 250 K~T~p~l~~l~---------------------------------~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~ 296 (302)
T 3p8l_A 250 KSTYPALLGIA---------------------------------GAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLL 296 (302)
T ss_dssp -CCHHHHHCHH---------------------------------HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred CCcHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHH
Confidence 99999999754 7889999999999999999986 77789999999
Q ss_pred HHHhcc
Q 014706 413 MFNLER 418 (420)
Q Consensus 413 ~~~~~R 418 (420)
+|+++|
T Consensus 297 ~~~~~R 302 (302)
T 3p8l_A 297 TQLQLR 302 (302)
T ss_dssp HHTSCC
T ss_pred HHHhhC
Confidence 999988
No 31
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=6.2e-60 Score=482.67 Aligned_cols=312 Identities=18% Similarity=0.152 Sum_probs=244.9
Q ss_pred HHHHHHHHHHHHHhhCCCCh-H----HHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHH
Q 014706 106 AEDLQTLNQNLKSIVGAENP-V----LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTA 180 (420)
Q Consensus 106 ~~~l~~v~~~l~~~~~~~~p-~----l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~A 180 (420)
.+-.+.+.+.|.+......| . +...+.+|...||||+||+|+++++++++..-......+.+.++|++|||||+|
T Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~a 120 (395)
T 3mav_A 41 DKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAA 120 (395)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 33344466666654433222 1 222333334479999999999999988753111112235678899999999999
Q ss_pred HhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHH--HHHHHHHcC-----CcHHHHHHHHHHHHHHHhHHHHHhhh
Q 014706 181 SLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFA--QSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQASS 253 (420)
Q Consensus 181 sLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~--~a~~~l~~l-----~~~~v~~~ls~~~~~l~~Ge~~q~~~ 253 (420)
|||||||||+|++|||+||+|.+||+++||++||+|+. .++.++... ...++++++++++..++.||..|+..
T Consensus 121 sLiHDDImD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~ 200 (395)
T 3mav_A 121 FLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNI 200 (395)
T ss_dssp HHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHhcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999774 456665532 24688999999999999999988753
Q ss_pred ccC------------------------CCCCHHHHHHHHhhccHHH-HHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHH
Q 014706 254 LFD------------------------CDLELEEYLIKSYYKTASL-IAASTKGAAIFSGVD--GSLSKQMYEYGRNLGL 306 (420)
Q Consensus 254 ~~~------------------------~~~t~~~Yl~~i~~KTa~L-~~~a~~~gailag~~--~~~~~~l~~~G~~lGi 306 (420)
..+ ..+++++|++|+++|||+| |.+||.+|++++|++ +...+.+++||.++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~ 280 (395)
T 3mav_A 201 FSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGE 280 (395)
T ss_dssp TSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHH
T ss_pred HhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Confidence 210 2368999999999999999 899999999999975 4567999999999999
Q ss_pred HHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhh-ChHHHHHHHhhcCC--cchHHHHHHHHHhcCcHHHHHH
Q 014706 307 SFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIESEFCE--TGSLDEAIKLVKTSGGIEEAQE 383 (420)
Q Consensus 307 afQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~-~~~l~~~l~~~~~~--~~~~~~i~~li~~~g~i~~a~~ 383 (420)
||||+||++|++++++.+|| +|+||++||+|||+++|+++ +++.+..+.+.++. ++.++.+.++++++|+.+++++
T Consensus 281 aFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~ 359 (395)
T 3mav_A 281 YFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYES 359 (395)
T ss_dssp HHHHHHHHHHHC---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 99999999999999999999 69999999999999999998 67788888777654 4567889999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc
Q 014706 384 LAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418 (420)
Q Consensus 384 ~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R 418 (420)
+++++.++|.+.|+.+|.+..+..|..+++.+.+|
T Consensus 360 ~~~~~~~~a~~~l~~l~~~~l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 360 YEKAQKAKILSAINELHHEGIEYVLKYLLEILFTG 394 (395)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcC
Confidence 99999999999999999887777777777776654
No 32
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=3.7e-60 Score=469.54 Aligned_cols=277 Identities=26% Similarity=0.354 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHH
Q 014706 101 IFEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMI 177 (420)
Q Consensus 101 l~~~l~~~l~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEli 177 (420)
+.+.+....+.|++.|.+.++.. ++.+.++++|.+..||||+||.|++++++++ |.+ .+.+.++|+++|||
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~----g~~--~~~~~~~A~aiEli 82 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLI----DVD--QGVLDIIAAALELT 82 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHT----TCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHH
Confidence 45566777788999999888764 6789999999999999999999999888765 333 36788999999999
Q ss_pred HHHHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC----c----HHHHHHHHHHH--HHHHh
Q 014706 178 HTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE----N----LEVIKLISQVI--KDFAS 245 (420)
Q Consensus 178 H~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~----~----~~v~~~ls~~~--~~l~~ 245 (420)
|+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+++++.. . .++++.+++++ ..++.
T Consensus 83 H~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~ 162 (313)
T 3lom_A 83 HCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVS 162 (313)
T ss_dssp HHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHH
Confidence 9999999999 99999999999999999999999999999999999998751 1 24666777765 57899
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhh
Q 014706 246 GEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG--VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQ 323 (420)
Q Consensus 246 Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag--~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~ 323 (420)
||..|+....+..+++++|++|+++|||+||+++|++ |+++| ++++..+.+++||.++|+||||+||++|++++++.
T Consensus 163 GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~ 241 (313)
T 3lom_A 163 GQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQI 241 (313)
T ss_dssp HHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred hHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence 9999987765557899999999999999999999999 99999 89999999999999999999999999999999999
Q ss_pred hCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCCh
Q 014706 324 LGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP 403 (420)
Q Consensus 324 ~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 403 (420)
+|||.|+|+++||+|||++++ ++++++.++++.++|++.|+.||++
T Consensus 242 ~GK~~g~Dl~~gK~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~~- 287 (313)
T 3lom_A 242 LGKGRSSDQANQKTTFATLFN---------------------------------KQQLEEEIAVHYQIAMDSLRLFGSK- 287 (313)
T ss_dssp ------------CCCHHHHSC---------------------------------HHHHHHHHHHHHHHHHHTTTTTGGG-
T ss_pred hCCCCcchhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCcc-
Confidence 999999999999999999996 4578999999999999999999975
Q ss_pred HHHHHHHHHHHHhccC
Q 014706 404 FRVALEDMVMFNLERF 419 (420)
Q Consensus 404 ~~~~L~~l~~~~~~R~ 419 (420)
++.|..|++|+++|.
T Consensus 288 -~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 288 -AAALIELTKQLQNRS 302 (313)
T ss_dssp -GHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcc
Confidence 789999999999985
No 33
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=2.7e-60 Score=467.60 Aligned_cols=273 Identities=27% Similarity=0.351 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHH
Q 014706 102 FEVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTA 180 (420)
Q Consensus 102 ~~~l~~~l~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~A 180 (420)
.+.+....+.|++.|.+.++.. ++.+.++++|. ..||||+||.|++++++++ |.+ .+.+.++|+++||||+|
T Consensus 4 ~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~gGKrlRp~L~l~~~~~~----g~~--~~~~~~~A~avEliH~a 76 (297)
T 3m0g_A 4 SERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQGGKRLRAFLAIESAAIH----GIS--MAQAMPAALAVEALHAY 76 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSCSCCHHHHHHHHHHHHT----TCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCCCCcHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHHHH
Confidence 3455566777888888888765 67899999999 8999999999999888765 333 36788999999999999
Q ss_pred Hhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC--c----HHHHHHHHHHH--HHHHhHHHHH
Q 014706 181 SLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N----LEVIKLISQVI--KDFASGEIKQ 250 (420)
Q Consensus 181 sLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~--~----~~v~~~ls~~~--~~l~~Ge~~q 250 (420)
||||||| ||+|++|||+||+|.+||+++|||+||||+++||+++++.. + .++++.+++++ ..++.||..|
T Consensus 77 sLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lD 156 (297)
T 3m0g_A 77 SLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALD 156 (297)
T ss_dssp HHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHH
Confidence 9999999 99999999999999999999999999999999999998864 1 36778888888 7899999999
Q ss_pred hhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCc
Q 014706 251 ASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAA 329 (420)
Q Consensus 251 ~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g 329 (420)
+.... ...+++++|++|+++|||+||+++|++|++++|++++ .+++||.++|+||||+||++|++++++.+|||.|
T Consensus 157 l~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g 233 (297)
T 3m0g_A 157 IAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLG 233 (297)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC--------------
T ss_pred HHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcc
Confidence 87652 4478999999999999999999999999999999877 8999999999999999999999999999999999
Q ss_pred ccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Q 014706 330 SDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALE 409 (420)
Q Consensus 330 ~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~ 409 (420)
+|+++||+|||++++++ ++++.++++.++|++.|+.||++. +.|.
T Consensus 234 ~Dl~~gK~T~p~l~~l~---------------------------------~a~~~~~~~~~~A~~~L~~~~~~~--~~L~ 278 (297)
T 3m0g_A 234 KDAEAHKATFVSLLGLA---------------------------------GAKSRAADLVAEAEAALAPYGEAA--STLR 278 (297)
T ss_dssp -------CCHHHHHCSS---------------------------------HHHHHHHHHHHHHHHHTGGGGGGG--HHHH
T ss_pred chhhcCCccHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHhCCCCH--HHHH
Confidence 99999999999999765 688899999999999999999864 8999
Q ss_pred HHHHHHhccC
Q 014706 410 DMVMFNLERF 419 (420)
Q Consensus 410 ~l~~~~~~R~ 419 (420)
.|++|+++|.
T Consensus 279 ~l~~~~~~R~ 288 (297)
T 3m0g_A 279 ACARYVIERD 288 (297)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHhc
Confidence 9999999996
No 34
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=2.7e-60 Score=469.31 Aligned_cols=280 Identities=26% Similarity=0.362 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHH--HHHHHHHH
Q 014706 100 NIFEVVAEDLQTLNQNLKSIVGAE--NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKH--RRLAEIIE 175 (420)
Q Consensus 100 ~l~~~l~~~l~~v~~~l~~~~~~~--~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~--~~lAaavE 175 (420)
++.+.+...++.|++.|.+.++.. +|.+.++++|.+..||||+||.|++++++++ |... ++. .++|+++|
T Consensus 7 ~~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~----g~~~--~~~~~~~~A~aiE 80 (309)
T 3pde_A 7 RLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSL----GVTF--VPERHWRPVMALE 80 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT----TCCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCCH--HHHhHhHHHHHHH
Confidence 455677788888999898887654 6889999999999999999999999888765 3332 355 89999999
Q ss_pred HHHHHHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc-----HHHHHHHHHHH--HHHHhH
Q 014706 176 MIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-----LEVIKLISQVI--KDFASG 246 (420)
Q Consensus 176 liH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~-----~~v~~~ls~~~--~~l~~G 246 (420)
|||+|||||||| ||+|++|||+||+|.+||+++|||+||+|+++||+.+++... .++++.+++++ ..++.|
T Consensus 81 liH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~G 160 (309)
T 3pde_A 81 LLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAG 160 (309)
T ss_dssp HHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHh
Confidence 999999999999 999999999999999999999999999999999999998642 35777888876 579999
Q ss_pred HHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCC
Q 014706 247 EIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGK 326 (420)
Q Consensus 247 e~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK 326 (420)
|..|+..... .+++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 161 Q~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK 239 (309)
T 3pde_A 161 QAKDIQSEHV-NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGK 239 (309)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHccCC-CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCC
Confidence 9998765433 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHH
Q 014706 327 PAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRV 406 (420)
Q Consensus 327 ~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~ 406 (420)
|.|+|+++||+|||++++++ .+.+.++++.++|++.|+.+|.+-..+
T Consensus 240 ~~g~Dl~egK~T~p~l~al~---------------------------------~a~~~~~~~~~~a~~~l~~~~~~~~~~ 286 (309)
T 3pde_A 240 ATQKDADEAKNTYPGKLGLI---------------------------------GANQALIDTIHSGQAALQGLPTSTQRD 286 (309)
T ss_dssp -----CTTTSSSHHHHHCHH---------------------------------HHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CccchhhcCCccHHHHHHHH---------------------------------HhHHHHHHHHHHHHHHHHHhhhccCHH
Confidence 99999999999999999876 577788899999999999987752222
Q ss_pred HHHHHHHHHhccC
Q 014706 407 ALEDMVMFNLERF 419 (420)
Q Consensus 407 ~L~~l~~~~~~R~ 419 (420)
.|..+++|+++|+
T Consensus 287 ~L~~l~~~~~~r~ 299 (309)
T 3pde_A 287 DLAAFFSYFDTER 299 (309)
T ss_dssp HHHGGGGGSCTTT
T ss_pred HHHHHHHHHHHhh
Confidence 3999999999996
No 35
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=2.7e-60 Score=483.79 Aligned_cols=292 Identities=19% Similarity=0.198 Sum_probs=255.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHhhh---hCC---c-cccHHHHHHHH----HHHHHHHHHhhhcccCCCCCCC
Q 014706 126 VLMSAAEQIFGAGGKRLRPALVFLVSRATAEL---VGL---K-ELTTKHRRLAE----IIEMIHTASLIHDDVLDESDMR 194 (420)
Q Consensus 126 ~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~---~g~---~-~~~~~~~~lAa----avEliH~AsLIHDDIiD~s~~R 194 (420)
.+.++++|.+ .||||+||+|+++++++++.. +++ . ...++.+++|+ ++||||+||||||||||+|++|
T Consensus 57 ~l~~~m~Y~~-~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~R 135 (390)
T 3dyh_A 57 YLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTR 135 (390)
T ss_dssp HHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHhhc-CCccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCc
Confidence 5788888988 999999999999988875420 000 0 12245666666 7999999999999999999999
Q ss_pred CCCCchhhhcChHHHHHHhHHHHHHH--HHHHHcC-C-c---HHHHHHHHHHHHHHHhHHHHHhhhcc----------C-
Q 014706 195 RGQETVHQLYGTRVAVLAGDFMFAQS--SWYLANL-E-N---LEVIKLISQVIKDFASGEIKQASSLF----------D- 256 (420)
Q Consensus 195 RG~pt~h~~~G~~~Ail~GD~Ll~~a--~~~l~~l-~-~---~~v~~~ls~~~~~l~~Ge~~q~~~~~----------~- 256 (420)
||+||||..||+++||++||+++.++ +.++++. . . .++++++++++..++.||+.|+...+ .
T Consensus 136 RG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~ 215 (390)
T 3dyh_A 136 RGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQP 215 (390)
T ss_dssp TTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCC
T ss_pred CCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999999999999755 6777653 1 1 47889999999999999999876521 0
Q ss_pred -----CCCCHHHHHHHHhhccHHH-HHHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCc
Q 014706 257 -----CDLELEEYLIKSYYKTASL-IAASTKGAAIFSGVDGSL-SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAA 329 (420)
Q Consensus 257 -----~~~t~~~Yl~~i~~KTa~L-~~~a~~~gailag~~~~~-~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g 329 (420)
..+++++|++|+++|||+| |+++|++|++++|++++. .+.+++||.++|+||||+||++|+++|++.+|| .|
T Consensus 216 ~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g 294 (390)
T 3dyh_A 216 TTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VG 294 (390)
T ss_dssp CCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CC
T ss_pred cccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-Cc
Confidence 2579999999999999999 999999999999998875 789999999999999999999999999999999 99
Q ss_pred ccccCCcccHHHHHHhhh-ChHHHHHHHhhcC--CcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCCh--H
Q 014706 330 SDLAKGNLTAPVIFALEK-EPKLREIIESEFC--ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP--F 404 (420)
Q Consensus 330 ~DL~eGk~TlP~l~ale~-~~~l~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~--~ 404 (420)
+||++||+|||++++++. +|+.++.|...++ +++++++++++++++|++++++++++++.++|.+.|+.||+++ .
T Consensus 295 ~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~ 374 (390)
T 3dyh_A 295 TDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGF 374 (390)
T ss_dssp CTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred chhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCchHH
Confidence 999999999999999998 7888888887775 4567899999999999999999999999999999999999887 4
Q ss_pred HHHHHHHHHHHhccC
Q 014706 405 RVALEDMVMFNLERF 419 (420)
Q Consensus 405 ~~~L~~l~~~~~~R~ 419 (420)
++.|..|++++++|+
T Consensus 375 ~~~l~~l~~~i~~R~ 389 (390)
T 3dyh_A 375 AASVETLWGKTYKRQ 389 (390)
T ss_dssp HHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999996
No 36
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-59 Score=457.01 Aligned_cols=265 Identities=25% Similarity=0.351 Sum_probs=231.5
Q ss_pred HHHHHHHHHHhhCC-CChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhccc
Q 014706 109 LQTLNQNLKSIVGA-ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDV 187 (420)
Q Consensus 109 l~~v~~~l~~~~~~-~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDI 187 (420)
.++|++.|.+.+.. .++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|+++||||+||||||||
T Consensus 15 ~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~avEliH~asLIHDDI 88 (284)
T 2ftz_A 15 XEXVEERIREILRPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLG----VE--EEXLLDVAVAVELFHTASLIHDDL 88 (284)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHT----CC--HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----cC--HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 35677777777643 356899999999999999999999999888753 32 356789999999999999999999
Q ss_pred --CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCC-CCCHHHH
Q 014706 188 --LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDC-DLELEEY 264 (420)
Q Consensus 188 --iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~-~~t~~~Y 264 (420)
||+|++|||+||+|.+||+++|||+||||+++|++++++.++.++++.+++++..++.||+.|+....+. .+++++|
T Consensus 89 P~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y 168 (284)
T 2ftz_A 89 PPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMV 168 (284)
T ss_dssp TTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHH
T ss_pred hhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999999999998776554 7899999
Q ss_pred HHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHH
Q 014706 265 LIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 344 (420)
Q Consensus 265 l~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~a 344 (420)
++|+++|||+||+++|++|++++|++++ .+++||.++|+||||+||++|++++++.+|||.|+||+ |+|||++++
T Consensus 169 ~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~ 243 (284)
T 2ftz_A 169 ERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVG 243 (284)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHC
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHH
Confidence 9999999999999999999999999877 89999999999999999999999999999999999999 999999997
Q ss_pred hhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH-HHHHHHHHhcc
Q 014706 345 LEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA-LEDMVMFNLER 418 (420)
Q Consensus 345 le~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~-L~~l~~~~~~R 418 (420)
+ +++++.+++|.++|++.|+.||+ +.++. |..|++|+++|
T Consensus 244 l---------------------------------~~a~~~a~~~~~~A~~~L~~l~~-~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 244 I---------------------------------QXAREMADXYYEEVLXGIESEGL-FRTLFLLXELXQMVEER 284 (284)
T ss_dssp H---------------------------------HHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTC
T ss_pred H---------------------------------HHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHcC
Confidence 4 46899999999999999999998 77888 99999999987
No 37
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=2e-59 Score=461.05 Aligned_cols=271 Identities=28% Similarity=0.423 Sum_probs=233.8
Q ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcccC
Q 014706 110 QTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVL 188 (420)
Q Consensus 110 ~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDIi 188 (420)
..|++.|.+.+... .|.+.++++|.+..||||+||.|+++++++++. . .+...++|+++||||+|||||||||
T Consensus 12 ~~i~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~----~--~~~~~~~A~avEliH~asLIHDDi~ 85 (295)
T 3ipi_A 12 RYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSG----S--YSRSLNAALAVEMMHSASLIHDDLL 85 (295)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHS----C--CGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC----C--HHHHHHHHHHHHHHHHHHHHHCcCc
Confidence 45677777666543 478999999999999999999999998887642 2 2567899999999999999999999
Q ss_pred CCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHH
Q 014706 189 DESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKS 268 (420)
Q Consensus 189 D~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i 268 (420)
|+|++|||+||+|.+||+++|||+||||+++||++++... .++++.+++++..++.||+.|+....+ .+++++|++|+
T Consensus 86 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~t~~~y~~~i 163 (295)
T 3ipi_A 86 DQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKLEDE-SFGENDYFKCI 163 (295)
T ss_dssp HHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHH
T ss_pred CCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHccCC-CCCHHHHHHHH
Confidence 9999999999999999999999999999999999998864 688999999999999999998765543 47889999999
Q ss_pred hhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhC
Q 014706 269 YYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKE 348 (420)
Q Consensus 269 ~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~ 348 (420)
++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++|++++++ || |+.+||+|||++++++..
T Consensus 164 ~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~al~~~ 237 (295)
T 3ipi_A 164 YKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIYMKSTS 237 (295)
T ss_dssp HHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTTSC
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998764 54 678999999999998753
Q ss_pred hHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhccC
Q 014706 349 PKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERF 419 (420)
Q Consensus 349 ~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~ 419 (420)
+ .++++++++.+++|.++|++.|+.||+++.++.|..|++|++.|.
T Consensus 238 ~-------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 238 K-------------------------EEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITVDM 283 (295)
T ss_dssp H-------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTGGG
T ss_pred c-------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 2 135899999999999999999999999999999999999999884
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=2.1e-57 Score=449.52 Aligned_cols=280 Identities=30% Similarity=0.359 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHHHHHhhCC---CChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014706 103 EVVAEDLQTLNQNLKSIVGA---ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 179 (420)
Q Consensus 103 ~~l~~~l~~v~~~l~~~~~~---~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~ 179 (420)
..+..... |++.|.+.++. .+|.+.++++|.+..||||+||.|+++++++++.....++..+.+.++|+++||||+
T Consensus 10 ~~~~~~~~-ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~aiEliH~ 88 (311)
T 3llw_A 10 FYYNECER-FESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHT 88 (311)
T ss_dssp HHHHHHHH-HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH
Confidence 34443334 88899988853 467899999999999999999999999888764210000011577899999999999
Q ss_pred HHhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHc--CCcH---HHHHHHHHH--HHHHHhHHHHH
Q 014706 180 ASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN--LENL---EVIKLISQV--IKDFASGEIKQ 250 (420)
Q Consensus 180 AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~--l~~~---~v~~~ls~~--~~~l~~Ge~~q 250 (420)
+||||||| ||+|++|||+||+|.+||+.+|||+||+|+++||+++++ +++. ++++.++++ +..++.||..|
T Consensus 89 aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lD 168 (311)
T 3llw_A 89 YSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALD 168 (311)
T ss_dssp HHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999 999999999999999999999999999999999999988 4332 466777777 46899999988
Q ss_pred hhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCc
Q 014706 251 ASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLS-KQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAA 329 (420)
Q Consensus 251 ~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~-~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g 329 (420)
+... +..+++++|++|+++|||+||+++|++|++++|++++.+ +.+++||.++|+||||+||++|++++++.+|||.|
T Consensus 169 l~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g 247 (311)
T 3llw_A 169 CYFE-NTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTH 247 (311)
T ss_dssp HHTT-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCcccc
Confidence 7654 456899999999999999999999999999999999988 99999999999999999999999999999999888
Q ss_pred ccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCC-ChH-HHH
Q 014706 330 SDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPR-SPF-RVA 407 (420)
Q Consensus 330 ~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~-~~~-~~~ 407 (420)
+ ++||+|||++++++ .+++.++++.++|++.|+.||. +.. .+.
T Consensus 248 ~--~~gK~T~p~l~~l~---------------------------------~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 292 (311)
T 3llw_A 248 L--DSAKNSFVNLLGLE---------------------------------RANNYAQTLKTEVLNDLDALKPAYPLLQEN 292 (311)
T ss_dssp -----CCSCHHHHHCHH---------------------------------HHHHHHHHHHHHHHHHHTTSTTTCHHHHHH
T ss_pred c--ccCcchHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHhhhccccCccHHHH
Confidence 7 99999999999866 5778888999999999999664 233 578
Q ss_pred HHHHHHHHhccC
Q 014706 408 LEDMVMFNLERF 419 (420)
Q Consensus 408 L~~l~~~~~~R~ 419 (420)
|..+++|+++|+
T Consensus 293 l~~l~~~~~~r~ 304 (311)
T 3llw_A 293 LNALLNTLFKGE 304 (311)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcc
Confidence 999999999996
No 39
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=1.8e-57 Score=460.23 Aligned_cols=283 Identities=17% Similarity=0.160 Sum_probs=240.0
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcCh
Q 014706 127 LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGT 206 (420)
Q Consensus 127 l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~ 206 (420)
+.++++|.+ .||||+||+|+++++++++.. .....+.++++|++|||||+||||||||||+|++|||+||+|.+||+
T Consensus 60 ~~~~l~Y~~-~GGKrlRp~l~~~~~~~~~~~--~~~~~e~~~~la~aiEliH~asLiHDDimD~s~~RRG~pt~h~~~G~ 136 (368)
T 2q58_A 60 YLNCIDYNV-KKGKHIRGKILVLISSLSSAY--SNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQ 136 (368)
T ss_dssp HHHHHHHHT-TCSTTTTTC-CHHHHTTTTCC--CSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHH
T ss_pred HHHHHhcCC-CCccchhHHHHHHHHHHhCCC--ccCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccCcch
Confidence 446677765 899999999999988765421 11223577899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHHhHHHHHhhhc--cCCCCCHHHHHHHHhhccHHH-H
Q 014706 207 RVAVLAGDFMFAQSSWYLANLEN-------LEVIKLISQVIKDFASGEIKQASSL--FDCDLELEEYLIKSYYKTASL-I 276 (420)
Q Consensus 207 ~~Ail~GD~Ll~~a~~~l~~l~~-------~~v~~~ls~~~~~l~~Ge~~q~~~~--~~~~~t~~~Yl~~i~~KTa~L-~ 276 (420)
++|||+||+|++.|++++.++.. .++++++++++..++.||..|+... .+.+.+.++|++|+++|||.| |
T Consensus 137 ~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~ 216 (368)
T 2q58_A 137 SNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTF 216 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccc
Confidence 99999999999999999987643 3678899999999999999987543 345678899999999999998 7
Q ss_pred HHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhh-ChHHHH
Q 014706 277 AASTKGAAIFSG--VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLRE 353 (420)
Q Consensus 277 ~~a~~~gailag--~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~-~~~l~~ 353 (420)
.+|+.+|++++| ++++..+.+++||.++|+||||+||++||++ |||.|+||++||+|||+++|++. +++.+.
T Consensus 217 ~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~ 291 (368)
T 2q58_A 217 YMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKL 291 (368)
T ss_dssp HHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHH
T ss_pred hHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCHHHHH
Confidence 999999999998 5677888999999999999999999999974 89999999999999999999998 688899
Q ss_pred HHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHH----HHHHHHHHHhccC
Q 014706 354 IIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRV----ALEDMVMFNLERF 419 (420)
Q Consensus 354 ~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~----~L~~l~~~~~~R~ 419 (420)
.+.+.++.. .+.+.+++...+..+.+.+.++++.+++.+.|+.+|++..++ .|.+|+++++.|+
T Consensus 292 ~L~~~~~~~--~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 292 KISENYGKN--SSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHHHHTTTC--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHhCCC--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh
Confidence 888877653 355677777788888899999999999999999999877655 4556666777664
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=6.3e-56 Score=435.18 Aligned_cols=266 Identities=30% Similarity=0.408 Sum_probs=217.5
Q ss_pred HHHHHHHHHhhC---CCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcc
Q 014706 110 QTLNQNLKSIVG---AENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDD 186 (420)
Q Consensus 110 ~~v~~~l~~~~~---~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDD 186 (420)
+.|++.|.+.++ ..+|.+.++++|.+..||||+||.|+++++++++ .. ..+.+.++|+++||||+|||||||
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~----~~-~~~~~~~~A~aiEliH~aSLIHDD 81 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNK----PE-LLNQALDVALALEFIHTYSLIHDD 81 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----GG-GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhC----CC-cHHHHHHHHHHHHHHHHHHHHHCC
Confidence 457777777664 3467899999999999999999999998887653 22 236788999999999999999999
Q ss_pred c--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC-c----HHHHHHHHHH--HHHHHhHHHHHhhhccCC
Q 014706 187 V--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE-N----LEVIKLISQV--IKDFASGEIKQASSLFDC 257 (420)
Q Consensus 187 I--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~-~----~~v~~~ls~~--~~~l~~Ge~~q~~~~~~~ 257 (420)
| ||+|++|||+||+|.+||+++|||+||+|+++||+.+++.. + .+++++++++ +..++.||..+..... .
T Consensus 82 Ip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~-~ 160 (291)
T 3npk_A 82 LPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFED-K 160 (291)
T ss_dssp STTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-S
T ss_pred cccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC-C
Confidence 9 99999999999999999999999999999999999998753 2 3567788888 7889999998876543 4
Q ss_pred CCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcc
Q 014706 258 DLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 337 (420)
Q Consensus 258 ~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~ 337 (420)
.+++++|.+|+++|||+||+++|++||+++|++++..+.+++||.++|+||||+||++|++++++.+|||.+.| +||+
T Consensus 161 ~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~ 238 (291)
T 3npk_A 161 RLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKN 238 (291)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------C
T ss_pred CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999887 9999
Q ss_pred cHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhc
Q 014706 338 TAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLE 417 (420)
Q Consensus 338 TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~ 417 (420)
|||++++++ .+.+.++++.++|++.|+.|+. ...+.|.++++|-++
T Consensus 239 T~p~l~~l~---------------------------------~a~~~~~~~~~~a~~~l~~~~~-~~~~~l~~la~~~~~ 284 (291)
T 3npk_A 239 SFVNLLGLE---------------------------------QAIKTKENLLNECEQDLEKLNE-KLAQMIQNLIIQYLE 284 (291)
T ss_dssp CHHHHHCHH---------------------------------HHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHH---------------------------------HhHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHh
Confidence 999999876 4666778889999999999874 236789999988764
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=1.5e-55 Score=432.51 Aligned_cols=263 Identities=20% Similarity=0.284 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHHhhCC-CChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhh
Q 014706 105 VAEDLQTLNQNLKSIVGA-ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLI 183 (420)
Q Consensus 105 l~~~l~~v~~~l~~~~~~-~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLI 183 (420)
+..-.+.|++.|.+.+.. ..|.+.++++|.+. ||||+||.|+++++++++ +. .+.+.++|+++||||+||||
T Consensus 15 ~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~avEliH~asLI 87 (289)
T 2azj_A 15 WLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALG----GD--IKDSYGGALAIEILHSASLA 87 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-CCCCHHHHHHHHHHHHTT----CC--GGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHHHHHH
Confidence 333344577777777654 35679999999998 999999999999888753 32 24578899999999999999
Q ss_pred hcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHH
Q 014706 184 HDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYL-ANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELE 262 (420)
Q Consensus 184 HDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l-~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t~~ 262 (420)
||||||+|++|||+||+|.+||+++|||+||||+++||+++ ++.+ +++++.+++++..++.||+.|+.. ++
T Consensus 88 HDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~-------~~ 159 (289)
T 2azj_A 88 LCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGALRDMYD-------NS 159 (289)
T ss_dssp HHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTTT-------TS
T ss_pred hCCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhh-------HH
Confidence 99999999999999999999999999999999999999999 8875 479999999999999999988653 67
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHH
Q 014706 263 EYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVI 342 (420)
Q Consensus 263 ~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l 342 (420)
+|++++++|||+||+++|++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+ |+++||.|||++
T Consensus 160 ~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l 231 (289)
T 2azj_A 160 DYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKY 231 (289)
T ss_dssp CHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHH
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHH
Confidence 8999999999999999999999999 99999999999999999999999999999986 574 899999999999
Q ss_pred HHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHhccC
Q 014706 343 FALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPR-SPFRVALEDMVMFNLERF 419 (420)
Q Consensus 343 ~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~-~~~~~~L~~l~~~~~~R~ 419 (420)
+ +..+ .+++ .+..+++|.++|++.|+.+|+ ++.++.|..+++|+++|.
T Consensus 232 ~--~~~g---------------~~~a------------~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 232 Y--REGK---------------LEEY------------VRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGL 280 (289)
T ss_dssp H--TTTC---------------HHHH------------HHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHH
T ss_pred H--HcCC---------------HHHH------------HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 9 2211 0111 135899999999999999998 788999999999999985
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=1.3e-54 Score=426.85 Aligned_cols=265 Identities=31% Similarity=0.424 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHH
Q 014706 102 FEVVAEDLQTLNQNLKSIVGAEN-PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTA 180 (420)
Q Consensus 102 ~~~l~~~l~~v~~~l~~~~~~~~-p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~A 180 (420)
-..+..+++.|++.|.+.+.... +.+.++++|.+..||||+||.|++++++++ |+. .+.+.++|+++||||+|
T Consensus 14 ~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~----g~~--~~~~~~~A~avEliH~a 87 (293)
T 2j1p_A 14 ISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELV----GGE--ESLAMPAACAVEMIHTM 87 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHT----TCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHHHH
Confidence 34566678889999999887654 569999999999999999999999988764 332 35678999999999999
Q ss_pred Hhhhccc--CCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC-----cHHHHHHH---HHHH--HHHHhHHH
Q 014706 181 SLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE-----NLEVIKLI---SQVI--KDFASGEI 248 (420)
Q Consensus 181 sLIHDDI--iD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~-----~~~v~~~l---s~~~--~~l~~Ge~ 248 (420)
||||||| ||+|++|||+||+|.+||+++|||+||+|+++|++++++.. +..+++++ ++++ ..++.||+
T Consensus 88 sLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~ 167 (293)
T 2j1p_A 88 SLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQV 167 (293)
T ss_dssp HHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 9999998 99999999999999999999999999999999999998752 33455544 4443 46899999
Q ss_pred HHhhhccC--CCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCC
Q 014706 249 KQASSLFD--CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGK 326 (420)
Q Consensus 249 ~q~~~~~~--~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK 326 (420)
.|+....+ ..+++++|..|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|+++++
T Consensus 168 ~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~----- 242 (293)
T 2j1p_A 168 VDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS----- 242 (293)
T ss_dssp HTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-----
Confidence 98765443 35688999999999999999999999999999999999999999999999999999999999774
Q ss_pred CCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHH
Q 014706 327 PAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRV 406 (420)
Q Consensus 327 ~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~ 406 (420)
|.|+|++++ ++++++.+++|.++|++.|+.+| ++.++
T Consensus 243 ---------K~T~p~l~g---------------------------------le~a~~~a~~~~~~A~~~L~~l~-~~~~~ 279 (293)
T 2j1p_A 243 ---------KLTYPKLMG---------------------------------LEKSREFAEKLNTEARDQLLGFD-SDKVA 279 (293)
T ss_dssp ---------CCCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHTTTSC-TTTTH
T ss_pred ---------cccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCC-cHHHH
Confidence 899999984 56899999999999999999998 44589
Q ss_pred HHHHHHHHHhccCC
Q 014706 407 ALEDMVMFNLERFV 420 (420)
Q Consensus 407 ~L~~l~~~~~~R~~ 420 (420)
.|..+++|+++|..
T Consensus 280 ~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 280 PLLALANYIANRQN 293 (293)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999974
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=5.6e-51 Score=397.88 Aligned_cols=220 Identities=25% Similarity=0.365 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014706 101 IFEVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 179 (420)
Q Consensus 101 l~~~l~~~l~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~ 179 (420)
+...+.++++.|++.|.+.+... +|.+.++++|++..||||+||+|+++++++++. .....+.+.++|+++||||+
T Consensus 6 l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~---~~~~~~~~~~~A~aiEliH~ 82 (285)
T 4fp4_A 6 LPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDR---RSIMDPRILEAAAIVELLHV 82 (285)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCG---GGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC---CCCChHHHHHHHHHHHHHHH
Confidence 44678889999999999999987 889999999999999999999999998887542 01134678899999999999
Q ss_pred HHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCC
Q 014706 180 ASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDL 259 (420)
Q Consensus 180 AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~~~~ 259 (420)
||||||||||+|++|||+||+|.+||+++|||+||||+++|++.+++.++ ++++++++++..++.||+.|+....+
T Consensus 83 aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~GQ~lDl~~~~~--- 158 (285)
T 4fp4_A 83 VSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVGQALDLEGERD--- 158 (285)
T ss_dssp HHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHHHHhcccc---
Confidence 99999999999999999999999999999999999999999999999865 89999999999999999988754321
Q ss_pred CHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCC
Q 014706 260 ELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKG 335 (420)
Q Consensus 260 t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eG 335 (420)
. |+++|||+||+++|++|++++|++ +..+.+++||+++|+||||+||++|++++++ .||+.|+||+++
T Consensus 159 ---~---~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 159 ---K---AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp ---H---HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred ---c---hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 1 999999999999999999999999 8889999999999999999999999999876 577899999887
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=1.5e-46 Score=366.07 Aligned_cols=205 Identities=15% Similarity=0.220 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChH-HHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014706 100 NIFEVVAEDLQTLNQNLKSIVGAENPV-LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 178 (420)
Q Consensus 100 ~l~~~l~~~l~~v~~~l~~~~~~~~p~-l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH 178 (420)
+++..+.. .|++.|.+.+....|. +.++++|++..||||+||.|++++++++ |.+ .++..++|+++||||
T Consensus 3 ~~~~~~~~---~ie~~L~~~l~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~----g~~--~~~~~~~A~aiEliH 73 (274)
T 3kra_B 3 PYWAAIEA---DIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELV----GGD--RSQAMAAAAAIHLVH 73 (274)
T ss_dssp HHHHHHHH---HHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHT----TCC--GGGGHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHH
Confidence 34444444 4788888888877775 9999999999999999999999888765 333 356789999999999
Q ss_pred HHHhhhcccC-CCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcH-------HHHHHHHHHH-----HHHHh
Q 014706 179 TASLIHDDVL-DESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENL-------EVIKLISQVI-----KDFAS 245 (420)
Q Consensus 179 ~AsLIHDDIi-D~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~-------~v~~~ls~~~-----~~l~~ 245 (420)
+||||||||+ |++++|||+||+|.+||+++|||+||+|+++||+++++...+ .+++++.... ..++.
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~ 153 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMIS 153 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999998 766789999999999999999999999999999999986542 4455554443 45799
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhH
Q 014706 246 GEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDI 314 (420)
Q Consensus 246 Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDl 314 (420)
||..|+....+ .+++++|++|+++|||+||+++|++|++++|++++.++.+++||+++|+||||+||.
T Consensus 154 GQ~lDl~~~~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 154 GLHREEEIVDG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHTTCCTT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988765544 689999999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=1.4e-45 Score=359.32 Aligned_cols=208 Identities=13% Similarity=0.195 Sum_probs=176.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhCCCChH-HHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHH
Q 014706 95 PISLANIFEVVAEDLQTLNQNLKSIVGAENPV-LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEI 173 (420)
Q Consensus 95 ~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~-l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaa 173 (420)
|.++.++++.+..+ |++.|.+.++...|. +.++++|.+..||||+||+|+++++++++ .+ .+++.++|++
T Consensus 3 ~~~~~~~~~~~~~~---i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g----~~--~~~~~~~A~a 73 (273)
T 3qkc_B 3 LTRTQTYRATIESD---IESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVG----GD--RSDAMAAAAA 73 (273)
T ss_dssp CCHHHHHHHHHHHH---HHHHHHHHSCCCCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTT----CC--GGGTHHHHHH
T ss_pred hhhHHHHHHHHHHH---HHHHHHHhcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHH
Confidence 55667777777655 677888888876664 99999999999999999999999887653 32 3577899999
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc------HHHHHHHHHHH-----HH
Q 014706 174 IEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN------LEVIKLISQVI-----KD 242 (420)
Q Consensus 174 vEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~------~~v~~~ls~~~-----~~ 242 (420)
+||||+||||||||+|.|+ |||+||+|.+||+++|||+||+|+++||+++++... .++++++.... ..
T Consensus 74 iEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~ 152 (273)
T 3qkc_B 74 VHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEG 152 (273)
T ss_dssp HHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhH
Confidence 9999999999999999999 999999999999999999999999999999987542 35566655543 45
Q ss_pred HHhHHHHHhhhccCCCCCHHHHHH-HHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHh
Q 014706 243 FASGEIKQASSLFDCDLELEEYLI-KSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDIL 315 (420)
Q Consensus 243 l~~Ge~~q~~~~~~~~~t~~~Yl~-~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDll 315 (420)
++.||..|+.. +...+. +|++ ++++|||+||+++|++||+++|++++.++.+++||.++|+||||+||+.
T Consensus 153 ~~~GQ~lDl~~--~~~~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 153 IVEGQYHELGL--NQLNDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHHHHHHHTTC--CSSCCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhc--CCCCCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 79999988755 333454 6665 5599999999999999999999999999999999999999999999996
No 46
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=95.89 E-value=0.096 Score=51.87 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHH
Q 014706 232 VIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIV 311 (420)
Q Consensus 232 v~~~ls~~~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~ 311 (420)
...++...+..+..|...++. ..-.|++++..-+++-.|....+.+.+-..-...+ +........+.++|.|+|+.
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~---~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~-~~~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLD---KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFED-PLVGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG---CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSC-HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCcc-chhhhHHHHHHHHHHHHHHH
Confidence 445566667777777655543 33458888888888877887777766644322222 22345677899999999999
Q ss_pred hhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 014706 312 DDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANL 391 (420)
Q Consensus 312 DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~ 391 (420)
|=+.|+- .|+..|.+-||.-..-+..-...+ +..+..-..+..+ +..-...++.+..+
T Consensus 188 NilRDv~-----------eD~~~gR~YlP~e~l~~~g~~~~d-----l~~~~~~~~~~~~------l~~l~~~A~~~~~~ 245 (343)
T 3vj8_A 188 NIIRDYL-----------EDQQGGREFWPQEVWSRYVKKLGD-----FAKPENIDLAVQC------LNELITNALHHIPD 245 (343)
T ss_dssp HHHHTHH-----------HHHHTTCCCSCHHHHTTTCSSGGG-----GGSGGGHHHHHHH------HHHHHHHHHTTHHH
T ss_pred HHHHHhH-----------HHHhCCCeeCCHHHHHHcCCCHHH-----HhcccCCHHHHHH------HHHHHHHHHHHHHH
Confidence 9888863 667778888887543332100000 1111222223322 34556677888888
Q ss_pred HHHHhccCCCC
Q 014706 392 AIHNLHCLPRS 402 (420)
Q Consensus 392 A~~~L~~lp~~ 402 (420)
|...+..+|+.
T Consensus 246 a~~~~~~L~~~ 256 (343)
T 3vj8_A 246 VITYLSRLRNQ 256 (343)
T ss_dssp HHHHHHTCCCH
T ss_pred HHHHHHhCCcc
Confidence 88888888774
No 47
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=94.94 E-value=1.2 Score=42.77 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=76.8
Q ss_pred HHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccc
Q 014706 241 KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 320 (420)
Q Consensus 241 ~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~ 320 (420)
.++..|...++.. ..-.|++++..-+++=.|....+.+.+ ++..+++ ...++.++|+|+|+.|=+.|+-
T Consensus 107 ~~li~g~~~Dl~~--~~~~t~~dL~~Y~~~vAg~VG~m~~~i---~g~~~~~----~~~~A~~lG~AlQltNilRDv~-- 175 (294)
T 4hd1_A 107 LRLIEANRRDQRK--HTYDTWEDLRDYCRYSADPVGRLVLGI---FGCLDDE----RARLSDATCTALQVANHMQDID-- 175 (294)
T ss_dssp HHHHHHHHHHHHC--SBCCSHHHHHHHHHHHTHHHHHHHHHH---TTCCSHH----HHHHHHHHHHHHHHHHHHHTHH--
T ss_pred HHHHHHHHhcccc--CCCCCHHHHHHHHHhccchHHHHHHHH---hCCCCHH----HHHHHHHHHHHHHHHHHHHhch--
Confidence 3455665444322 223477777776666556655554433 3333433 3467899999999999888874
Q ss_pred hhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCC
Q 014706 321 AEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 400 (420)
Q Consensus 321 ~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 400 (420)
.|+..|.+-+|.-..-+..-...++.. .. .. +.+..+ +..-...++.+.++|...+..+|
T Consensus 176 ---------eD~~~gR~YlP~~~l~~~gv~~~dl~~-~~-~~---~~~~~~------~~~~~~~A~~~~~~a~~~~~~lp 235 (294)
T 4hd1_A 176 ---------RDLALGRIYVPRADLEQFGATLDDIRA-RR-AT---DGVRRC------IALEVDRAQALFDEGRRLESLVP 235 (294)
T ss_dssp ---------HHHHTTCBCSCHHHHHTTTCCHHHHHT-TC-CC---HHHHHH------HHHHHHHHHHHHHHHGGGGGSSC
T ss_pred ---------hhhccCceeCCHHHHHHcCCCHHHHhc-CC-CC---HHHHHH------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 567788888887654443211112221 11 11 122222 23445667788888888888887
Q ss_pred CC
Q 014706 401 RS 402 (420)
Q Consensus 401 ~~ 402 (420)
..
T Consensus 236 ~~ 237 (294)
T 4hd1_A 236 PR 237 (294)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 48
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=93.74 E-value=2.8 Score=41.61 Aligned_cols=92 Identities=9% Similarity=-0.073 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHH--HHHHHHHHHH
Q 014706 229 NLEVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSK--QMYEYGRNLG 305 (420)
Q Consensus 229 ~~~v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~--~l~~~G~~lG 305 (420)
.+.....+.+.+..++.+-+.+..+.. ...+++++|+++-..-.|..+..+...-+.--..+++..+ .+.++-+..+
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~~~~~ 254 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQ 254 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHHHHHH
Confidence 455667777788888888877766543 4468999999986655555433322111111123444332 4666788889
Q ss_pred HHHhHHhhHhhhccc
Q 014706 306 LSFQIVDDILDFTQS 320 (420)
Q Consensus 306 iafQI~DDllD~~~~ 320 (420)
...-+.||+..|-.+
T Consensus 255 ~i~rL~NDi~S~~kE 269 (382)
T 3kb9_A 255 EFAAWYNDLCSLPKE 269 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998543
No 49
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=93.41 E-value=2.1 Score=40.94 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=82.4
Q ss_pred HHHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhcc
Q 014706 240 IKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQ 319 (420)
Q Consensus 240 ~~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~ 319 (420)
+.++..|...++.. ..-.|++++..-+++=.|....+.+.+- |.++. ......+.++|.|+|+.|=+.|+-
T Consensus 110 ~~~li~g~~~Dl~~--~~~~t~~dL~~Yc~~vAg~VG~l~~~l~----g~~~~--~~~~~~A~~lG~AlQltNilRDv~- 180 (293)
T 3acx_A 110 FYNLIDTVYKDQHF--TMFETDAELFGYCYGVAGTVGEVLTPIL----SDHET--HQTYDVARRLGESLQLINILRDVG- 180 (293)
T ss_dssp HHHHHHHHHHHTTC--CCCSSHHHHHHHHHHHTHHHHHHHHHHH----CSSCC--HHHHHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHcCC--CCCCCHHHHHHHHHHhhHHHHHHHHHHh----CCCCc--HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455665444321 2334788888877777777766665542 23221 235679999999999999888863
Q ss_pred chhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccC
Q 014706 320 SAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCL 399 (420)
Q Consensus 320 ~~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 399 (420)
.|+..|++-+|.=..-+..-...++.... .+ . .+.+ .+......++.+..+|...+..+
T Consensus 181 ----------eD~~~gR~YLP~d~l~~~gv~~e~l~~~~-~~-~---~~~~------~~~~l~~~A~~~~~~a~~~~~~l 239 (293)
T 3acx_A 181 ----------EDFENERIYFSKQRLKQYEVDIAEVYQNG-VN-N---HYID------LWEYYAAIAEKDFRDVMDQIKVF 239 (293)
T ss_dssp ----------HHHHTTCCCSCHHHHHHHTCCHHHHHHHC-CC-H---HHHH------HHHHHHHHHHHHHHHHHHTGGGS
T ss_pred ----------HHHhCCcEEeCHHHHHHcCCCHHHhcccC-CC-H---HHHH------HHHHHHHHHHHHHHHHHHhHHhC
Confidence 57778889999855433321111222211 11 1 2222 23455677888999999999999
Q ss_pred CCCh
Q 014706 400 PRSP 403 (420)
Q Consensus 400 p~~~ 403 (420)
|...
T Consensus 240 p~~~ 243 (293)
T 3acx_A 240 SIEA 243 (293)
T ss_dssp CTTH
T ss_pred CHHH
Confidence 8754
No 50
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=77.62 E-value=6.2 Score=38.13 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc--HH
Q 014706 166 KHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN--LE 231 (420)
Q Consensus 166 ~~~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~--~~ 231 (420)
....+...-+.+=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++. ..
T Consensus 204 ~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~ 283 (304)
T 3lsn_A 204 ELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAAEP 283 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 344566677888899999999977 6788999999999999999998888899999998888763 22
Q ss_pred HHHHHHHHHHHHHhH
Q 014706 232 VIKLISQVIKDFASG 246 (420)
Q Consensus 232 v~~~ls~~~~~l~~G 246 (420)
+..+....+.+..+|
T Consensus 284 L~~l~~~~~~R~~~~ 298 (304)
T 3lsn_A 284 LRELARYIVERRSEG 298 (304)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHhcccc
Confidence 223333344444444
No 51
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=77.09 E-value=65 Score=32.46 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC--CChHHHH--HHHHHHHH
Q 014706 229 NLEVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSG--VDGSLSK--QMYEYGRN 303 (420)
Q Consensus 229 ~~~v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag--~~~~~~~--~l~~~G~~ 303 (420)
.....+.+.+.+..++.+-+.+..+.. +..+++++|+++- ..||.....++ + -...| ..+++.+ .+.++-+.
T Consensus 253 ~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R-~~sg~~p~~~l-~-e~~~g~~lp~~v~~~p~~~~L~~~ 329 (433)
T 3v1v_A 253 TPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMR-QFNNFRPCPTI-T-DTVGGYELPADLHARPDMQRVIAL 329 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH-HHSSSTTTGGG-H-HHHHTCCCCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHhHHHHHHH-H-HHHcCCCCCHHHHhCchHHHHHHH
Confidence 445566667777777777776665532 4567999999974 45544322221 1 11122 3444433 46677888
Q ss_pred HHHHHhHHhhHhhhccchhhhCCCCcccccCCcc-cHHHHHHhh
Q 014706 304 LGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL-TAPVIFALE 346 (420)
Q Consensus 304 lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~-TlP~l~ale 346 (420)
.+...-+.||+..|-.+.+ +.|.. +...+|.-+
T Consensus 330 ~~~i~rL~NDI~Sy~kE~~----------~gg~~~N~V~~~mke 363 (433)
T 3v1v_A 330 AGNATTIVNDLYSYTKELN----------SPGRHLNLPVVIAER 363 (433)
T ss_dssp HHHHHHHHHHHHSHHHHTT----------SSSCCCCHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHh----------cCCCCCcHHHHHHHh
Confidence 8889999999999953321 11333 777777654
No 52
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=75.79 E-value=70 Score=33.42 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC--CChHHHHHH---HHHHHHH
Q 014706 231 EVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSG--VDGSLSKQM---YEYGRNL 304 (420)
Q Consensus 231 ~v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag--~~~~~~~~l---~~~G~~l 304 (420)
.++..+.+....++.+-+.++.+.. ...||+++|++...--+|......... ...| .+++..+.+ .++-+..
T Consensus 366 ~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~--~~mg~~lt~e~~e~~~~~p~i~~~~ 443 (554)
T 3g4d_A 366 YRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSF--VGMGDIVTPETFKWAASDPKIIQAS 443 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHH--HTSCTTSCHHHHHHHHTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHH--HhcCCCCCHHHHHhccccHHHHHHH
Confidence 5677777888888888888877654 446899999998766555543322211 1123 355555443 3678888
Q ss_pred HHHHhHHhhHhhhcc
Q 014706 305 GLSFQIVDDILDFTQ 319 (420)
Q Consensus 305 GiafQI~DDllD~~~ 319 (420)
+...-+.||+..+-.
T Consensus 444 ~~I~RL~NDI~S~k~ 458 (554)
T 3g4d_A 444 TIICRFMDDVAEHKF 458 (554)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHhcccchhhh
Confidence 999999999999853
No 53
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=71.55 E-value=72 Score=33.30 Aligned_cols=87 Identities=8% Similarity=0.181 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC-CChHHHHHH---HHHHHHHHH
Q 014706 232 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSLSKQM---YEYGRNLGL 306 (420)
Q Consensus 232 v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag-~~~~~~~~l---~~~G~~lGi 306 (420)
++..+.++..+++.+-+.++.+.. ...||+++|++...--+|.........-. ++. .+++..+-+ -++-+..+.
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~-mg~~lt~e~~e~~~~~p~i~~~~~~ 443 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFA-VVQNIKKEEIENLQKYHDIISRPSH 443 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHH-HCSSCCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHh-cCCCCCHHHHHhcccchHHHHHHHH
Confidence 455666777788888877777653 44689999999866555544322221111 122 355554433 357788888
Q ss_pred HHhHHhhHhhhcc
Q 014706 307 SFQIVDDILDFTQ 319 (420)
Q Consensus 307 afQI~DDllD~~~ 319 (420)
..-+.||+..+-.
T Consensus 444 i~RL~NDi~S~~~ 456 (555)
T 3n0f_A 444 IFRLCNDLASASA 456 (555)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhccchhhhh
Confidence 8999999999853
No 54
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=70.32 E-value=11 Score=36.51 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC
Q 014706 165 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228 (420)
Q Consensus 165 ~~~~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~ 228 (420)
+....+...-+.+=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 202 ~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 202 EQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3444566677888899999999976 467789999999999999998888888899988888775
No 55
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=70.12 E-value=16 Score=35.53 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC
Q 014706 165 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228 (420)
Q Consensus 165 ~~~~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~ 228 (420)
+....+...-+.+=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 231 ~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 306 (324)
T 3uca_A 231 GDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIK 306 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444566677888899999999965 456788999999999998888888888888888888875
No 56
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=69.48 E-value=12 Score=36.02 Aligned_cols=64 Identities=22% Similarity=0.186 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC
Q 014706 165 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228 (420)
Q Consensus 165 ~~~~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~ 228 (420)
+....+...-+.+=.|+-|.|||.| .++.+.|++|+=..+|...|.-...-+..+|...|..++
T Consensus 198 ~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 198 TTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344566667888889999999987 578899999999888888888778888888888887764
No 57
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=67.03 E-value=15 Score=35.31 Aligned_cols=60 Identities=25% Similarity=0.192 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC
Q 014706 169 RLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228 (420)
Q Consensus 169 ~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~ 228 (420)
.+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-++.+|...|..++
T Consensus 200 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~ 271 (297)
T 3m0g_A 200 PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYG 271 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456666788889999999987 357789999999999999998888888899988888765
No 58
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=64.28 E-value=17 Score=35.41 Aligned_cols=64 Identities=25% Similarity=0.226 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCc
Q 014706 166 KHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN 229 (420)
Q Consensus 166 ~~~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~ 229 (420)
....+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++.
T Consensus 210 ~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 210 QFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344566677888899999999965 4577899999999999999998888888999888887763
No 59
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=64.24 E-value=7.4 Score=33.29 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHH
Q 014706 209 AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEI 248 (420)
Q Consensus 209 Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~ 248 (420)
-||+||++=++.+.+|++......+..+++++..+.+...
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~ 111 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKS 111 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHH
Confidence 5599999999999999998888899999999988766543
No 60
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=64.13 E-value=98 Score=29.22 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHhhhcc-CCCC-CHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHH--HHHHHHHHH
Q 014706 229 NLEVIKLISQVIKDFASGEIKQASSLF-DCDL-ELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSK--QMYEYGRNL 304 (420)
Q Consensus 229 ~~~v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~-t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~--~l~~~G~~l 304 (420)
.+.....+.+....++.+.+.+..+.. ...+ ++++|+++-..-.|..+..+...-++--..+++..+ .+.++-...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~ 211 (337)
T 1ps1_A 132 TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIA 211 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHHHH
Confidence 455667777778888888776665543 2457 899999876555555443332222211123444332 455778888
Q ss_pred HHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhh
Q 014706 305 GLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK 347 (420)
Q Consensus 305 GiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~ 347 (420)
+...-+.||+..|-.+.+ -| | ..+...++.-+.
T Consensus 212 ~~i~rL~NDl~S~~kE~~-~G-----~----~~n~V~~~m~~~ 244 (337)
T 1ps1_A 212 VDVNLLLNDIASLEKEEA-RG-----E----QNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHHTHHHHHH-TT-----C----CCSHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHh-cC-----C----cchHHHHHHHHc
Confidence 999999999999964321 11 1 246666666553
No 61
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=62.14 E-value=89 Score=32.59 Aligned_cols=86 Identities=10% Similarity=0.093 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhc-C-CChHHHHH---HHHHHHHH
Q 014706 231 EVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFS-G-VDGSLSKQ---MYEYGRNL 304 (420)
Q Consensus 231 ~v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gaila-g-~~~~~~~~---l~~~G~~l 304 (420)
.++..+.+...+++.+-+.++.+.. ...||+++|++...--.|.....+.. .++ . .+.+..+- .-++-+..
T Consensus 362 ~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~~ 438 (550)
T 3m00_A 362 HIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEAS 438 (550)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHHH
Confidence 4566777788888888887777653 44689999999866555554322221 222 2 44554443 23577888
Q ss_pred HHHHhHHhhHhhhcc
Q 014706 305 GLSFQIVDDILDFTQ 319 (420)
Q Consensus 305 GiafQI~DDllD~~~ 319 (420)
+...-+.||+..+-.
T Consensus 439 ~~I~RL~NDI~S~k~ 453 (550)
T 3m00_A 439 VIICRVIDDTATYEV 453 (550)
T ss_dssp HHHHHHHHHHHSHHH
T ss_pred hhhheeeccchhHHH
Confidence 999999999999853
No 62
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=61.92 E-value=23 Score=34.05 Aligned_cols=63 Identities=25% Similarity=0.160 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcC
Q 014706 165 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL 227 (420)
Q Consensus 165 ~~~~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l 227 (420)
+....+...-+.+=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+...|...|..+
T Consensus 206 ~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 206 EVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444566667788889999999976 35678888898888888877777777777777766654
No 63
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=60.41 E-value=23 Score=34.56 Aligned_cols=64 Identities=30% Similarity=0.246 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC
Q 014706 165 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228 (420)
Q Consensus 165 ~~~~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~ 228 (420)
+....+...-+.+=.|+-|.|||.| .++.+.|++|+=..+|...+.-..+-+..+|...|..++
T Consensus 242 ~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 242 AERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3344566667888899999999976 356788999998888887777777777777777776654
No 64
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=59.11 E-value=17 Score=34.96 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC
Q 014706 168 RRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228 (420)
Q Consensus 168 ~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~ 228 (420)
..+...-+.+=.|+-|.||+.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 212 ~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 284 (302)
T 3p8r_A 212 PHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIP 284 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456667788889999999965 456788999999999988888888888888888888775
No 65
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=58.30 E-value=25 Score=33.92 Aligned_cols=64 Identities=17% Similarity=0.087 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC
Q 014706 165 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228 (420)
Q Consensus 165 ~~~~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~ 228 (420)
+....+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 210 ~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 285 (313)
T 3lom_A 210 QIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFG 285 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344566677888899999999965 457799999999999999998888888899988887765
No 66
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=57.53 E-value=1.2e+02 Score=28.00 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhcc
Q 014706 257 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQ 319 (420)
Q Consensus 257 ~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~ 319 (420)
..+++++|+.+-..-.|..+......-++=-..+++..+.+.++-...+...-+.||+..|-.
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~k 212 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDK 212 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 457999999976655555443333222222235677777888899999999999999999954
No 67
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=52.51 E-value=52 Score=31.38 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCC------CCCCCCCCCchhhhcC--------hHHHHHHhHHHHHHHHHHHHcCCc
Q 014706 166 KHRRLAEIIEMIHTASLIHDDVLD------ESDMRRGQETVHQLYG--------TRVAVLAGDFMFAQSSWYLANLEN 229 (420)
Q Consensus 166 ~~~~lAaavEliH~AsLIHDDIiD------~s~~RRG~pt~h~~~G--------~~~Ail~GD~Ll~~a~~~l~~l~~ 229 (420)
....+...-+.+=.|+-|.|||.| +.+.+.|++|+=..|+ ...|.-...-+..+|...|..++.
T Consensus 188 ~~~~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~ 265 (295)
T 3ipi_A 188 LAERFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETFRE 265 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344566667778889999999977 3556788888887777 555666666666777777777654
No 68
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=46.98 E-value=46 Score=32.04 Aligned_cols=61 Identities=20% Similarity=0.078 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCC------------CCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHc
Q 014706 166 KHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN 226 (420)
Q Consensus 166 ~~~~lAaavEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~ 226 (420)
....+...-+.+=.|+-|.|||.| .++.+.|++|+=..+|...|--.-.-++..|...+..
T Consensus 206 ~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 206 QWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344566667788889999999976 4678999999999998888877777777777777766
No 69
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=41.70 E-value=1.9e+02 Score=28.13 Aligned_cols=54 Identities=11% Similarity=-0.077 Sum_probs=40.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 281 KGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 281 ~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
.+++.+.|.+++....+...-+-|=.+.=|.||+.|= +|+|.|++|+-..|...
T Consensus 63 ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G~~ 116 (352)
T 3nf2_A 63 VLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVHGPA 116 (352)
T ss_dssp HHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHHCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhcChH
Confidence 3444555666665666777778888899999999883 77899999998877543
No 70
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=41.38 E-value=2.2e+02 Score=26.44 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhcc
Q 014706 257 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQ 319 (420)
Q Consensus 257 ~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~ 319 (420)
..+++++|+.+-..-.|..+......-++=-..+++..+.+.++-...+...-+.||+..|-.
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~k 226 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEK 226 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence 457999999987666665543333222221235677777788899999999999999999953
No 71
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=40.39 E-value=1.8e+02 Score=30.08 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC-CChHH-HHH---HHHHHHHHH
Q 014706 232 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSL-SKQ---MYEYGRNLG 305 (420)
Q Consensus 232 v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag-~~~~~-~~~---l~~~G~~lG 305 (420)
++..+.+....++.+-+.++.+.. ...||+++|++.-..-.|.........-+ ++. .+++. .+- ..++-+..+
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~-~g~~lt~e~~~e~~~~~p~i~~~~~ 440 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFT-FANASHDTAVIDSLYQYHDILCLAG 440 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTT-STTCCCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHH-cCCCCcHHHHHhhhcccHHHHHHHH
Confidence 344555666677777666665543 34579999999765444433222211111 122 33444 332 345777888
Q ss_pred HHHhHHhhHhhhccchhhhCCCCcccccCCc-ccHHHHHHhhh
Q 014706 306 LSFQIVDDILDFTQSAEQLGKPAASDLAKGN-LTAPVIFALEK 347 (420)
Q Consensus 306 iafQI~DDllD~~~~~~~~GK~~g~DL~eGk-~TlP~l~ale~ 347 (420)
+..-+.||+..+-.+. ..|. .+...+|.-+.
T Consensus 441 ~i~RL~NDi~S~~~E~-----------~rG~v~n~V~cyMke~ 472 (549)
T 1n1b_A 441 IILRLPDDLGTSYFEL-----------ARGDVPKTIQCYMKET 472 (549)
T ss_dssp HHHHHHHHHC--------------------CCCCHHHHHHHHH
T ss_pred HHHHHhcccchhhhhh-----------ccCCccHHHHHHHHHc
Confidence 8899999999885332 2333 36666666553
No 72
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=40.13 E-value=1.7e+02 Score=32.01 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHH--HHHHHHHHHhcC-CChHHHHHHH-----HHHH
Q 014706 232 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLI--AASTKGAAIFSG-VDGSLSKQMY-----EYGR 302 (420)
Q Consensus 232 v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~--~~a~~~gailag-~~~~~~~~l~-----~~G~ 302 (420)
++..+.++..+++.+-+.++.+.. ...+|+++|++...--.|... ...+..+ ++. .+++..+... ++-+
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHH
Confidence 455566677777878777766543 346899999997655444422 2222222 122 3455555444 6678
Q ss_pred HHHHHHhHHhhHhhhccchhhhCCCCcccccCCcc-cHHHHHHhhh
Q 014706 303 NLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL-TAPVIFALEK 347 (420)
Q Consensus 303 ~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~-TlP~l~ale~ 347 (420)
..+...-+.||+..+-.+. .+|.. +...+|.-+.
T Consensus 704 ~~~~I~RL~NDi~S~k~E~-----------~rG~~assV~cYMke~ 738 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAEK-----------ARGELASSIECYMKDH 738 (817)
T ss_dssp HHHHHHHHHHHHHSSCC-----------------CCCHHHHHHHHS
T ss_pred HHHHHHHHhccchHHHHHH-----------hcCCcchHHHHHHHhC
Confidence 8888889999999985332 23333 6666666553
No 73
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=39.13 E-value=3.2e+02 Score=29.60 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHH-HHHHHHHHHHhcC-CChHHHHHH---HHHHHHHH
Q 014706 232 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASL-IAASTKGAAIFSG-VDGSLSKQM---YEYGRNLG 305 (420)
Q Consensus 232 v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L-~~~a~~~gailag-~~~~~~~~l---~~~G~~lG 305 (420)
++..+.++..+++.+-+.++.+.. ...+|+++|++...--.|.. +...+..+ ++. .+++..+.. .++-+..+
T Consensus 567 ~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~ 644 (764)
T 3p5p_A 567 MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVS 644 (764)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHH
Confidence 455666677777777776766543 34689999999765555543 22222222 122 355555554 45778888
Q ss_pred HHHhHHhhHhhhcc
Q 014706 306 LSFQIVDDILDFTQ 319 (420)
Q Consensus 306 iafQI~DDllD~~~ 319 (420)
...-+.||+..+-.
T Consensus 645 ~I~RL~NDi~S~k~ 658 (764)
T 3p5p_A 645 LSWRLTNDTKTYQA 658 (764)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchHH
Confidence 89999999999853
No 74
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=38.75 E-value=2.7e+02 Score=26.82 Aligned_cols=69 Identities=23% Similarity=0.206 Sum_probs=41.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHH
Q 014706 263 EYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVI 342 (420)
Q Consensus 263 ~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l 342 (420)
.|....-+|- +-..-+.+++.+.|.+.+....+...-+-+=.+.-|.||+.|= +|+|.|++|+-..
T Consensus 46 ~y~~~~gGKr--lRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~ 111 (341)
T 3mzv_A 46 AHLIEAGGKR--LRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLL 111 (341)
T ss_dssp HHHHHSCCCC--HHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHH
T ss_pred HHHHhCCCCc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHh
Confidence 4554445563 2222233344445556555666777778888899999999772 6789999998877
Q ss_pred HHh
Q 014706 343 FAL 345 (420)
Q Consensus 343 ~al 345 (420)
|..
T Consensus 112 ~G~ 114 (341)
T 3mzv_A 112 WDN 114 (341)
T ss_dssp SCH
T ss_pred cCh
Confidence 653
No 75
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=38.60 E-value=2.3e+02 Score=27.24 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=31.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 283 AAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 283 gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
++.+.|.+++....+...-+-+=.++=|.||+.|= +|+|.|++|+-..|...
T Consensus 58 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G~~ 109 (334)
T 3rmg_A 58 VARLYGAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFNNK 109 (334)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcChH
Confidence 33334556665566777778888899999999772 77899999999888754
No 76
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=35.79 E-value=1.5e+02 Score=28.32 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhhcccCCC--CCC--------CCCCCchhhhcChHHHHHHhHHHHHHHHHHHHc
Q 014706 168 RRLAEIIEMIHTASLIHDDVLDE--SDM--------RRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN 226 (420)
Q Consensus 168 ~~lAaavEliH~AsLIHDDIiD~--s~~--------RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~ 226 (420)
..+...-+.|=.|+-|.|||.|- ++. +.||+|+=..+|...|--.-.-++..|...|..
T Consensus 213 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 213 KWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666778888899999999663 111 788899999999888888888888888888887
No 77
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=31.20 E-value=1.8e+02 Score=28.28 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCC------------CCCCCCCCchhhhcC
Q 014706 166 KHRRLAEIIEMIHTASLIHDDVLDE------------SDMRRGQETVHQLYG 205 (420)
Q Consensus 166 ~~~~lAaavEliH~AsLIHDDIiD~------------s~~RRG~pt~h~~~G 205 (420)
....+...-+.+=.|+-|.||+.|- ++.|.|++|+=..|+
T Consensus 213 ~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~a 264 (345)
T 3oyr_A 213 KSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLA 264 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHH
Confidence 3445666678888999999999883 355666777655543
No 78
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=30.50 E-value=3.5e+02 Score=25.48 Aligned_cols=49 Identities=24% Similarity=0.248 Sum_probs=36.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 286 FSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 286 lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
..|.+++....+...-+-+=.+.=|.||+.|= +|+|.|++|+-..|...
T Consensus 39 ~~~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G~~ 87 (301)
T 2q80_A 39 WLKVPEDKLQIIIEVTEMLHNASLLIDDIEDN------------SKLRRGFPVAHSIYGIP 87 (301)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHHCHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHccccCC------------CCCCCCCcchhhccCcH
Confidence 34555555556666777777888999999872 67899999998877644
No 79
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=29.81 E-value=1.4e+02 Score=28.23 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHh
Q 014706 290 DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 345 (420)
Q Consensus 290 ~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~al 345 (420)
+.+....+...-+-+=.+.-|.||+.|= +|+|.|++|+-..|..
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD~------------s~~RRG~Pt~h~~~G~ 109 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMDQ------------HDQRRGIKTPRAMYGD 109 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSBSSSSBCHHHHHCH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCCCCcHHHhcCh
Confidence 4455556666777788899999999772 6788899988776643
No 80
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=26.42 E-value=1.8e+02 Score=22.95 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=44.3
Q ss_pred hHHHHHHHhhcCCcchHHH----HHHHHHhcCcHHHHHHHHHHHHHHH--------H-----HHhccCCCChHHHHHHHH
Q 014706 349 PKLREIIESEFCETGSLDE----AIKLVKTSGGIEEAQELAKEKANLA--------I-----HNLHCLPRSPFRVALEDM 411 (420)
Q Consensus 349 ~~l~~~l~~~~~~~~~~~~----i~~li~~~g~i~~a~~~a~~~~~~A--------~-----~~L~~lp~~~~~~~L~~l 411 (420)
+.+++.+...+...++.++ +..-+.++|-.+..+.++++.+++- + .+-+.+|++--++.|..+
T Consensus 6 ~~lk~~I~~~LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~I 85 (96)
T 3mhs_B 6 AQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQI 85 (96)
T ss_dssp THHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHH
Confidence 4566666666555555444 4556778999999988888877642 1 222367877777777777
Q ss_pred HHHH
Q 014706 412 VMFN 415 (420)
Q Consensus 412 ~~~~ 415 (420)
-.|+
T Consensus 86 r~fL 89 (96)
T 3mhs_B 86 REFL 89 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 81
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=25.56 E-value=4.5e+02 Score=25.14 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=35.1
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 286 FSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 286 lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
..|.+++....+...-+-+=.+.=|.||+.|= +|+|.|++|+-..|...
T Consensus 54 ~~~~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G~~ 102 (340)
T 2e8v_A 54 VMNLPKDQLAIVSQIVELLHNSSLLIDDIEDN------------APLRRGQTTSHLIFGVP 102 (340)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHTCHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCcchhhccCch
Confidence 34555555555666666777788899999772 67899999988776543
No 82
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=23.67 E-value=1.4e+02 Score=28.15 Aligned_cols=51 Identities=20% Similarity=0.053 Sum_probs=35.9
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 284 AIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 284 ailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
+.+.|.+++....+...-+-+=.+.=|.||+.|= +|+|.|++|+-..|.-.
T Consensus 61 ~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~------------s~~RRG~pt~h~~~G~~ 111 (289)
T 2azj_A 61 TVALGGDIKDSYGGALAIEILHSASLALCDIVDL------------DATRRGDKAAWVVYGNR 111 (289)
T ss_dssp HHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCBSSSSBCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCccHHHhcChH
Confidence 3334555544455666667777788899999772 78899999988877644
No 83
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=23.47 E-value=3.5e+02 Score=25.47 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCC--CCC--------CCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCC
Q 014706 166 KHRRLAEIIEMIHTASLIHDDVLDE--SDM--------RRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 228 (420)
Q Consensus 166 ~~~~lAaavEliH~AsLIHDDIiD~--s~~--------RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~ 228 (420)
....+...-+.|=.|+-|.||+.|- ++. ..||+|+=..+|...|--.-.-++..+...|..++
T Consensus 196 ~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 268 (291)
T 3npk_A 196 ESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLN 268 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3445666778888999999999653 221 25667777777777776666777777777777664
No 84
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=23.03 E-value=1.5e+02 Score=23.67 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=46.7
Q ss_pred ChHHHHHHHhhcCCcchHHH----HHHHHHhcCcHHHHHHHHHHHHHHH----------H-----HHhccCCCChHHHHH
Q 014706 348 EPKLREIIESEFCETGSLDE----AIKLVKTSGGIEEAQELAKEKANLA----------I-----HNLHCLPRSPFRVAL 408 (420)
Q Consensus 348 ~~~l~~~l~~~~~~~~~~~~----i~~li~~~g~i~~a~~~a~~~~~~A----------~-----~~L~~lp~~~~~~~L 408 (420)
.+.++..+...+...++.++ +..-+.++|-.+..+.++++.+++- + .+-+.+|++--++.|
T Consensus 9 e~~lka~I~~~LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell 88 (101)
T 4dhx_B 9 DAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELL 88 (101)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHH
Confidence 45667777666655555544 4456678888888888888876542 1 223467887778888
Q ss_pred HHHHHHHhc
Q 014706 409 EDMVMFNLE 417 (420)
Q Consensus 409 ~~l~~~~~~ 417 (420)
..+-.|+-+
T Consensus 89 ~rIr~fL~~ 97 (101)
T 4dhx_B 89 QRIRTFLAQ 97 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887743
No 85
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=22.28 E-value=6.5e+02 Score=25.80 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcC-CChHHHHH---HHHHHHHHHH
Q 014706 232 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSLSKQ---MYEYGRNLGL 306 (420)
Q Consensus 232 v~~~ls~~~~~l~~Ge~~q~~~~~-~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag-~~~~~~~~---l~~~G~~lGi 306 (420)
++..+.+....++.+-+.++.+.. ...||+++|++.-..-.|.........-+ +++ .+++..+- .-++-+..++
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~-~g~~~t~e~~e~~~~~p~i~~~~~~ 434 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFR-VTDSFTKETVDSLYKYHDLVRWSSF 434 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHH-HSSCCCHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH-cCCCCCHHHHHHhcccHHHHHHHHH
Confidence 445566677777777776666554 34579999998765544443322222211 233 34444333 2356777788
Q ss_pred HHhHHhhHhhhcc
Q 014706 307 SFQIVDDILDFTQ 319 (420)
Q Consensus 307 afQI~DDllD~~~ 319 (420)
..-+.||+..+-.
T Consensus 435 i~RL~NDi~S~~~ 447 (543)
T 2ong_A 435 VLRLADDLGTSVE 447 (543)
T ss_dssp HHHHHHHHHSSHH
T ss_pred HHHHhcccchhhh
Confidence 8889999998853
No 86
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=21.76 E-value=2.2e+02 Score=27.20 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=36.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHh
Q 014706 282 GAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 345 (420)
Q Consensus 282 ~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~al 345 (420)
+++.+.|.+++....+...-+-+=.+.=|.||+.|= +|+|.|++|+-..|..
T Consensus 49 ~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~------------s~~RRG~pt~h~~~G~ 100 (330)
T 1wmw_A 49 YSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDG------------SEERRGRPALHRLHPM 100 (330)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHSCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC------------CCCCCCCCccccccCc
Confidence 334444556555556666777777889999999872 6788888887766543
No 87
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=20.58 E-value=5.4e+02 Score=24.29 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=36.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 282 GAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 282 ~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
+++.+.|.+++....+...-+-+=.+.-|.||+.|= +|+|.|++|+-..|...
T Consensus 54 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G~~ 106 (325)
T 3aqb_B 54 LSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDN------------SDMRRGNTSVHIAFDKD 106 (325)
T ss_dssp HHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHTCHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCCCcccccChH
Confidence 334444555554455666667777788999999872 67899999988776543
No 88
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=20.29 E-value=1.1e+02 Score=30.00 Aligned_cols=46 Identities=20% Similarity=0.049 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHh
Q 014706 288 GVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 345 (420)
Q Consensus 288 g~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~al 345 (420)
|.+.+....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|..
T Consensus 61 g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G~ 106 (358)
T 4dhd_A 61 SGQWRPALPAAAIVELIHNYSLIYDDIIDR------------GDVRRGLPTVRKAFGD 106 (358)
T ss_dssp HSCCGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCEETTEECHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCccccC------------CCCcCCCccHHHhcCH
Confidence 334454555666777888899999999772 6788999998776653
No 89
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=20.02 E-value=1.9e+02 Score=27.31 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=33.1
Q ss_pred CC-ChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhh
Q 014706 288 GV-DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 346 (420)
Q Consensus 288 g~-~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale 346 (420)
|. +++....+...-+-+=.+.=|.||+.|= +|+|.|++|+-..|...
T Consensus 56 g~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G~~ 103 (299)
T 1v4e_A 56 GVEIGEDAISSLAALELVHLASLLHDDVIDG------------ARFRRGKETINFMYGDK 103 (299)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHHCHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHhhCCCCCC------------CCCCCCCCchhhhcCHH
Confidence 44 4444445666666667788899999872 67899999988776543
Done!