RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014706
(420 letters)
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 139 bits (349), Expect = 1e-38
Identities = 57/293 (19%), Positives = 108/293 (36%), Gaps = 12/293 (4%)
Query: 123 ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASL 182
+L+ + + GK++R L + LK K + + E+ EM+H ASL
Sbjct: 3 VQRILLEPYKYLLQLPGKQVRTKLSQAFNHW------LKVPEDKLQIIIEVTEMLHNASL 56
Query: 183 IHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKD 242
+ DD+ D S +RRG H +YG + + ++++ + L++ + +KL ++ + +
Sbjct: 57 LIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLE 116
Query: 243 FASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGR 302
G+ + EE + + G + +
Sbjct: 117 LHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDY---KEDLKPLLN 173
Query: 303 NLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK---EPKLREIIESEF 359
LGL FQI DD + K DL +G + P I A+ +++ I+
Sbjct: 174 TLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRT 233
Query: 360 CETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMV 412
+ ++ G E + KE A + +P VAL +
Sbjct: 234 ENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHL 286
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 120 bits (302), Expect = 5e-32
Identities = 72/295 (24%), Positives = 134/295 (45%), Gaps = 18/295 (6%)
Query: 106 AEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTT 165
+ +L+ + + ++ I+ + + GK LR L L + E+
Sbjct: 2 SYELEKVKERIEQIL---SQFFPEQIMKDLPLYGKMLRVRLSILSFKNRG-----VEIGE 53
Query: 166 KHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLA 225
+E++H ASL+HDDV+D + RRG+ET++ +YG + AV AGD + + +
Sbjct: 54 DAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVE 113
Query: 226 NLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAI 285
+ N ++ + VI + E+ + S + + EEYL K+ +L + + A+
Sbjct: 114 EIGNNKLRRAFLNVIGKMSEAELIEQLSRY-KPITKEEYLRIVEGKSGALFGLALQLPAL 172
Query: 286 FSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 345
G + +Y G +G +Q+ DDI+DF E++GK DL G + P++ A+
Sbjct: 173 LEGEL---GEDLYNLGVTIGTIYQMFDDIMDFA-GMEKIGKDGFLDLKNGVASFPLVTAM 228
Query: 346 EKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 400
EK P+ R++ E+ + ++ G ++E +E K I L
Sbjct: 229 EKFPEARQMFENR-----DWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLR 278
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 117 bits (293), Expect = 3e-30
Identities = 54/344 (15%), Positives = 107/344 (31%), Gaps = 30/344 (8%)
Query: 104 VVAEDLQTLNQNLKSIV------GAENPVLMSAAEQIFGA------GGKRLRPALVFLVS 151
VV + + IV G +P + A ++ GGK R V
Sbjct: 4 VVEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPGGKCNRGLTVVAAY 63
Query: 152 RATAELVGL-KELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAV 210
R + E + IE+ L+ DD++D+S RRGQ ++ G +
Sbjct: 64 RELSGPGQKDAESLRCALAVGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDA 123
Query: 211 LAGDFMFAQSSWYL------ANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEY 264
+ F+ S + + + +++L Q G++ + ++L +
Sbjct: 124 INDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHF 183
Query: 265 LIKSYYKTASLIAASTKGAA-------IFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDF 317
+ Y A + + +G FQI DD LD
Sbjct: 184 SEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDC 243
Query: 318 TQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIESEFC--ETGSLDEAIKLVKT 374
GK + V+ L++ P+ R+++E + E + + +L +
Sbjct: 244 FGDPALTGKVGTDI-QDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEA 302
Query: 375 SGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418
G Q+ + + + + +R
Sbjct: 303 VGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKR 346
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 108 bits (269), Expect = 2e-27
Identities = 77/298 (25%), Positives = 125/298 (41%), Gaps = 28/298 (9%)
Query: 103 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKE 162
V + Q L++ + + P ++ + GGKRLRP LV+
Sbjct: 9 ACVKQANQALSRFIAPLPFQNTP-VVETMQYGALLGGKRLRPFLVYATGHM------FGV 61
Query: 163 LTTKHRRLAEIIEMIHTASLIHDDVLDESDMRR--GQETVHQLYGTRVAVLAGDFMFAQS 220
T A +E IH SLIHDD+ D G T H +G A+LAGD + +
Sbjct: 62 STNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLA 121
Query: 221 SWYLANLENLEV-----IKLISQV-----IKDFASGEIKQASSLFDCDLELEEYLIKSYY 270
L++ + EV I +IS++ I G+ + + L+ +
Sbjct: 122 FSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDA-EGKHVPLDALERIHRH 180
Query: 271 KTASLIAASTKGAAIFSGVDGSLSKQM-YEYGRNLGLSFQIVDDILDFTQSAEQLGKPAA 329
KT +LI A+ + A+ +G G + + +Y ++GL+FQ+ DDILD LGK
Sbjct: 181 KTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG 240
Query: 330 SDLAKGNLTAPVIFALEK-EPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAK 386
+D G T P + LE+ K R++I+ + +L + S + LA
Sbjct: 241 ADQQLGKSTYPALLGLEQARKKARDLIDD------ARQSLKQLAEQSLDTSALEALAD 292
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 100 bits (248), Expect = 2e-24
Identities = 68/292 (23%), Positives = 117/292 (40%), Gaps = 25/292 (8%)
Query: 107 EDLQTLNQNLKSIVGAE--NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELT 164
+ + +N L + + L + AGGKR+RP L+ L + L
Sbjct: 7 KLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDS------LNTEY 60
Query: 165 TKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQET--VHQLYGTRVAVLAGDFMFAQSSW 222
+ A +EMIHT SLIHDD+ + + H++YG A+LAGD + ++
Sbjct: 61 ELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFE 120
Query: 223 YLANLENLEVIKLISQV-IKDFASGEIKQAS------SLFDCDLELEEYLIKSYYKTASL 275
+++ + L I + ASG + ++LE + KT +L
Sbjct: 121 LISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGAL 180
Query: 276 IAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKG 335
+ + AA + VD + + + Y +LG+ FQI DD+LD +LGK SDL
Sbjct: 181 LTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENN 240
Query: 336 NLTAPVIFALEK-EPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAK 386
T + + E KL ++ + + + + E+
Sbjct: 241 KSTYVSLLGKDGAEDKLTYHRDAAV-------DELTQIDEQFNTKHLLEIVD 285
>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 276
Score = 28.0 bits (62), Expect = 2.1
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 358 EFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 400
++CE SL + +++T + + ++A++ A + LH
Sbjct: 83 QWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ-GMDYLHAKS 124
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 268
Score = 27.4 bits (59), Expect = 3.4
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 104 VVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKR 141
+ D Q++ IVG+EN ++S+ +QI +
Sbjct: 11 LSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMK 48
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 27.3 bits (59), Expect = 3.5
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 348 EPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 407
E ++ E ++ + +++K EA + AKE L + P
Sbjct: 337 EERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQ----KWPVERL 392
Query: 408 LED 410
+ED
Sbjct: 393 IED 395
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 148
Score = 26.3 bits (58), Expect = 4.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 289 VDGSLSKQMYEYGRNLGLSFQIVDDI-----LDFTQSAEQLGKPAASDLAK 334
+D S+S +EY N +F+I DDI + E G +A DL
Sbjct: 74 IDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLES-GSCSAEDLKM 123
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 26.9 bits (58), Expect = 5.3
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 52 RRLVCCRQNLARCRVYSTKTPETLLNVGQIPPA 84
+CC +N ST +T Q+ PA
Sbjct: 318 VTTLCCGKNPLGDDEASTTVSKT--ETSQVAPA 348
>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
oxytoca [TaxId: 571]}
Length = 551
Score = 26.3 bits (58), Expect = 8.1
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 185 DDVLDESDMRRGQETVHQLYGTRVAVLAG-------DFMFAQSSWYLANLENLEVIK 234
D SDMRR + Q + +G D MFA S+ + ++ VI+
Sbjct: 335 DQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQ 391
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 26.0 bits (56), Expect = 9.0
Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 9/183 (4%)
Query: 216 MFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASL 275
+ Q+ + + I LI+ I+ FA S E+EE+ K + S
Sbjct: 201 ISTQTLQRDRHAHYMAAISLIATSIEKFAVEIRGLQKSETR---EVEEFFAK--GQKGSS 255
Query: 276 IAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKG 335
+ + G L++ + + + + + SAE++ P A+
Sbjct: 256 AMPHKRNPIGSENMTG-LARVIRGHMLTAYENVPLWHERDISHSSAERIILPDATIALNY 314
Query: 336 --NLTAPVIFALEKEP-KLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLA 392
N ++ L P ++ ++ S + L+ EEA ++ + +A A
Sbjct: 315 MLNRFGNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDKGMAREEAYDVVQPRAMEA 374
Query: 393 IHN 395
Sbjct: 375 WEK 377
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.368
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,447,533
Number of extensions: 65306
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 16
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)