Query 014708
Match_columns 420
No_of_seqs 376 out of 3501
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03034 phosphoglycerate kina 100.0 4.7E-62 1E-66 490.5 16.6 214 2-218 262-479 (481)
2 COG0126 Pgk 3-phosphoglycerate 100.0 3.6E-62 7.7E-67 476.5 14.7 205 1-215 185-393 (395)
3 cd00318 Phosphoglycerate_kinas 100.0 7.2E-62 1.6E-66 484.2 16.7 209 2-213 184-396 (397)
4 PLN02282 phosphoglycerate kina 100.0 1.5E-61 3.3E-66 481.8 15.2 210 2-214 187-400 (401)
5 PRK00073 pgk phosphoglycerate 100.0 1.2E-60 2.7E-65 474.3 15.8 206 2-213 180-388 (389)
6 PTZ00005 phosphoglycerate kina 100.0 3.6E-60 7.8E-65 474.0 16.9 210 2-214 201-416 (417)
7 KOG1367 3-phosphoglycerate kin 100.0 5.4E-60 1.2E-64 443.9 13.4 210 2-214 199-414 (416)
8 PRK13962 bifunctional phosphog 100.0 5.8E-58 1.3E-62 480.9 15.9 208 2-215 183-394 (645)
9 PF00162 PGK: Phosphoglycerate 100.0 3.9E-57 8.3E-62 450.4 12.1 197 2-204 184-384 (384)
10 PF02390 Methyltransf_4: Putat 100.0 5.6E-38 1.2E-42 289.3 20.8 188 218-416 6-195 (195)
11 COG0220 Predicted S-adenosylme 100.0 5.7E-38 1.2E-42 294.0 20.0 190 219-417 37-226 (227)
12 TIGR00091 tRNA (guanine-N(7)-) 100.0 4.4E-33 9.5E-38 257.1 21.4 185 219-417 6-194 (194)
13 PRK14121 tRNA (guanine-N(7)-)- 100.0 1.7E-31 3.6E-36 266.8 22.1 175 224-417 116-290 (390)
14 PRK01544 bifunctional N5-gluta 100.0 1E-29 2.2E-34 265.6 16.4 264 111-401 237-505 (506)
15 PRK00121 trmB tRNA (guanine-N( 99.9 3.5E-25 7.6E-30 205.7 19.1 172 218-403 29-201 (202)
16 KOG3115 Methyltransferase-like 99.8 1.3E-19 2.7E-24 162.8 8.7 192 218-418 43-246 (249)
17 COG2226 UbiE Methylase involve 99.7 1.6E-16 3.4E-21 149.9 11.7 105 230-347 51-155 (238)
18 PF12847 Methyltransf_18: Meth 99.6 4.5E-15 9.7E-20 123.8 12.2 108 231-348 2-111 (112)
19 PF01209 Ubie_methyltran: ubiE 99.6 1.7E-15 3.8E-20 143.5 10.5 105 230-347 47-152 (233)
20 PRK00107 gidB 16S rRNA methylt 99.6 2E-14 4.3E-19 131.8 15.1 120 231-369 46-165 (187)
21 PF05175 MTS: Methyltransferas 99.6 2.3E-14 5.1E-19 129.4 13.4 110 230-348 31-140 (170)
22 PF13847 Methyltransf_31: Meth 99.6 3.7E-14 8E-19 125.5 13.7 109 230-350 3-112 (152)
23 PRK08287 cobalt-precorrin-6Y C 99.6 9.8E-14 2.1E-18 127.1 16.7 123 230-370 31-153 (187)
24 PRK07402 precorrin-6B methylas 99.5 2.2E-13 4.7E-18 125.8 17.2 121 230-366 40-160 (196)
25 TIGR00138 gidB 16S rRNA methyl 99.5 8.2E-14 1.8E-18 127.2 13.9 120 231-369 43-165 (181)
26 TIGR03534 RF_mod_PrmC protein- 99.5 1.6E-13 3.5E-18 130.8 16.3 135 231-374 88-242 (251)
27 TIGR00537 hemK_rel_arch HemK-r 99.5 1.5E-13 3.1E-18 125.1 15.0 130 230-371 19-163 (179)
28 COG2890 HemK Methylase of poly 99.5 1.3E-13 2.9E-18 134.1 15.2 132 233-374 113-264 (280)
29 TIGR02752 MenG_heptapren 2-hep 99.5 1.5E-13 3.3E-18 129.7 15.0 106 230-348 45-151 (231)
30 COG2242 CobL Precorrin-6B meth 99.5 3.3E-13 7.2E-18 121.5 16.3 121 230-367 34-154 (187)
31 TIGR03533 L3_gln_methyl protei 99.5 1.9E-13 4E-18 133.5 15.8 127 231-367 122-268 (284)
32 TIGR00536 hemK_fam HemK family 99.5 2.3E-13 4.9E-18 133.0 15.8 134 232-374 116-270 (284)
33 PRK14966 unknown domain/N5-glu 99.5 3E-13 6.5E-18 136.7 17.0 136 231-374 252-406 (423)
34 COG2519 GCD14 tRNA(1-methylade 99.5 3.1E-13 6.6E-18 126.9 15.9 123 230-371 94-218 (256)
35 PLN02233 ubiquinone biosynthes 99.5 1.5E-13 3.3E-18 132.6 13.9 105 230-347 73-181 (261)
36 PRK14103 trans-aconitate 2-met 99.5 2.2E-13 4.7E-18 130.9 14.6 98 230-348 29-126 (255)
37 COG4123 Predicted O-methyltran 99.5 3.6E-13 7.9E-18 127.2 15.4 135 231-371 45-192 (248)
38 PF08241 Methyltransf_11: Meth 99.5 5.9E-14 1.3E-18 112.6 8.7 95 235-346 1-95 (95)
39 TIGR02469 CbiT precorrin-6Y C5 99.5 3.3E-13 7.1E-18 114.1 12.9 103 231-348 20-122 (124)
40 TIGR03704 PrmC_rel_meth putati 99.5 6.5E-13 1.4E-17 127.4 16.0 131 231-370 87-237 (251)
41 PF13659 Methyltransf_26: Meth 99.5 4.9E-13 1.1E-17 112.4 13.3 111 232-348 2-115 (117)
42 PRK15001 SAM-dependent 23S rib 99.5 5.5E-13 1.2E-17 134.4 14.8 121 231-360 229-353 (378)
43 PRK00377 cbiT cobalt-precorrin 99.5 1.4E-12 3.1E-17 120.6 16.4 123 230-367 40-164 (198)
44 PLN02244 tocopherol O-methyltr 99.5 3.9E-13 8.4E-18 134.6 13.1 105 230-348 118-223 (340)
45 PRK11805 N5-glutamine S-adenos 99.5 1.2E-12 2.5E-17 129.2 16.3 126 232-367 135-280 (307)
46 TIGR00740 methyltransferase, p 99.5 1E-12 2.2E-17 125.0 14.5 105 230-347 53-160 (239)
47 PRK15451 tRNA cmo(5)U34 methyl 99.5 5.8E-13 1.3E-17 127.5 12.8 134 197-347 27-163 (247)
48 PRK01544 bifunctional N5-gluta 99.5 1.3E-12 2.8E-17 137.1 16.3 136 231-375 139-295 (506)
49 PLN02396 hexaprenyldihydroxybe 99.5 1E-12 2.2E-17 130.1 14.5 155 231-411 132-287 (322)
50 PRK09328 N5-glutamine S-adenos 99.5 2.6E-12 5.6E-17 124.4 17.1 136 230-374 108-263 (275)
51 PRK04266 fibrillarin; Provisio 99.4 1.8E-12 3.9E-17 122.4 15.0 128 230-371 72-208 (226)
52 PRK11036 putative S-adenosyl-L 99.4 1.4E-12 3.1E-17 125.3 14.3 105 230-348 44-149 (255)
53 KOG1540 Ubiquinone biosynthesi 99.4 1.2E-12 2.5E-17 122.2 13.0 157 230-410 100-278 (296)
54 PRK11207 tellurite resistance 99.4 8.7E-13 1.9E-17 122.0 12.1 104 230-347 30-133 (197)
55 PRK01683 trans-aconitate 2-met 99.4 1.3E-12 2.9E-17 125.4 13.4 100 230-348 31-130 (258)
56 PF13649 Methyltransf_25: Meth 99.4 2.8E-13 6.1E-18 111.4 7.5 98 234-342 1-101 (101)
57 PF08704 GCD14: tRNA methyltra 99.4 3E-12 6.4E-17 121.9 15.1 126 230-371 40-169 (247)
58 PRK14968 putative methyltransf 99.4 5.9E-12 1.3E-16 114.6 15.7 132 230-371 23-171 (188)
59 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.2E-12 2.7E-17 121.9 10.9 112 230-362 59-175 (243)
60 PRK11873 arsM arsenite S-adeno 99.4 1.6E-11 3.5E-16 119.0 18.6 105 230-347 77-182 (272)
61 COG2813 RsmC 16S RNA G1207 met 99.4 3.1E-12 6.8E-17 123.3 12.9 127 226-362 154-281 (300)
62 PF08242 Methyltransf_12: Meth 99.4 9E-14 2E-18 113.7 1.8 99 235-344 1-99 (99)
63 PRK14967 putative methyltransf 99.4 1.1E-11 2.3E-16 116.9 15.7 129 230-368 36-179 (223)
64 TIGR00080 pimt protein-L-isoas 99.4 3.3E-12 7.2E-17 119.7 11.6 100 230-348 77-177 (215)
65 COG4106 Tam Trans-aconitate me 99.4 2.1E-12 4.5E-17 117.8 9.5 140 197-366 8-150 (257)
66 KOG1271 Methyltransferases [Ge 99.4 4.4E-12 9.5E-17 112.8 11.0 127 230-368 67-200 (227)
67 PRK11088 rrmA 23S rRNA methylt 99.4 3.8E-12 8.3E-17 123.5 11.8 107 230-361 85-194 (272)
68 PTZ00098 phosphoethanolamine N 99.4 1.2E-11 2.7E-16 119.5 15.0 104 230-347 52-155 (263)
69 TIGR00477 tehB tellurite resis 99.4 6.5E-12 1.4E-16 116.0 12.0 102 231-347 31-132 (195)
70 PF02353 CMAS: Mycolic acid cy 99.4 5.4E-12 1.2E-16 122.4 11.9 104 230-348 62-166 (273)
71 PRK09489 rsmC 16S ribosomal RN 99.4 8.1E-12 1.8E-16 124.9 13.4 119 231-360 197-316 (342)
72 PRK10258 biotin biosynthesis p 99.3 7E-12 1.5E-16 120.0 12.2 99 230-348 42-140 (251)
73 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.5E-11 3.3E-16 122.3 14.7 125 231-371 114-254 (340)
74 COG2230 Cfa Cyclopropane fatty 99.3 7.6E-12 1.7E-16 120.3 11.7 105 229-348 71-176 (283)
75 TIGR02072 BioC biotin biosynth 99.3 1.1E-11 2.4E-16 116.7 12.6 101 231-348 35-135 (240)
76 smart00828 PKS_MT Methyltransf 99.3 1.5E-11 3.2E-16 115.6 12.8 124 233-370 2-141 (224)
77 PRK13944 protein-L-isoaspartat 99.3 1.7E-11 3.6E-16 114.2 12.3 100 230-348 72-173 (205)
78 PLN02336 phosphoethanolamine N 99.3 2.9E-11 6.2E-16 126.4 15.5 104 230-348 266-369 (475)
79 PRK13942 protein-L-isoaspartat 99.3 1.5E-11 3.2E-16 115.2 11.8 100 230-348 76-176 (212)
80 PRK06922 hypothetical protein; 99.3 1.5E-11 3.3E-16 129.7 12.7 113 231-347 419-536 (677)
81 PRK00517 prmA ribosomal protei 99.3 4.6E-11 1E-15 114.6 14.6 117 230-371 119-236 (250)
82 TIGR00406 prmA ribosomal prote 99.3 7.6E-11 1.6E-15 115.5 16.3 122 230-371 159-281 (288)
83 PRK00811 spermidine synthase; 99.3 6.3E-11 1.4E-15 115.7 14.9 127 230-364 76-211 (283)
84 TIGR01177 conserved hypothetic 99.3 2.9E-11 6.4E-16 120.5 12.8 127 230-369 182-311 (329)
85 PRK04457 spermidine synthase; 99.3 7.1E-11 1.5E-15 114.1 15.0 126 230-363 66-193 (262)
86 PLN02672 methionine S-methyltr 99.3 7E-11 1.5E-15 131.8 16.9 134 231-371 119-301 (1082)
87 PLN03075 nicotianamine synthas 99.3 3.7E-11 7.9E-16 116.8 12.7 107 230-348 123-233 (296)
88 PRK12335 tellurite resistance 99.3 3.3E-11 7.1E-16 117.9 11.7 102 231-347 121-222 (287)
89 PRK01581 speE spermidine synth 99.3 1.3E-10 2.8E-15 115.6 15.9 132 230-368 150-292 (374)
90 TIGR00452 methyltransferase, p 99.3 2.1E-10 4.4E-15 113.3 16.8 104 230-348 121-225 (314)
91 TIGR02716 C20_methyl_CrtF C-20 99.2 2.4E-10 5.3E-15 112.7 16.2 103 230-347 149-253 (306)
92 PRK08317 hypothetical protein; 99.2 1.1E-10 2.4E-15 109.7 13.2 104 230-347 19-123 (241)
93 PRK15128 23S rRNA m(5)C1962 me 99.2 6.2E-10 1.3E-14 113.4 19.5 135 230-368 220-364 (396)
94 PRK14901 16S rRNA methyltransf 99.2 2.2E-10 4.8E-15 118.4 16.1 135 230-365 252-404 (434)
95 COG2264 PrmA Ribosomal protein 99.2 1.1E-10 2.5E-15 113.2 12.7 133 219-371 152-286 (300)
96 PRK14902 16S rRNA methyltransf 99.2 2.1E-10 4.5E-15 119.0 15.4 130 230-365 250-399 (444)
97 PRK15068 tRNA mo(5)U34 methylt 99.2 1E-10 2.2E-15 116.2 12.5 104 230-348 122-226 (322)
98 TIGR00438 rrmJ cell division p 99.2 2E-10 4.4E-15 105.2 13.4 131 230-374 32-171 (188)
99 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.4E-10 5.2E-15 110.6 14.5 114 230-350 71-201 (264)
100 PRK10901 16S rRNA methyltransf 99.2 3.3E-10 7.2E-15 116.9 15.5 116 230-349 244-373 (427)
101 PRK14903 16S rRNA methyltransf 99.2 3.8E-10 8.2E-15 116.4 15.8 116 230-349 237-367 (431)
102 TIGR03840 TMPT_Se_Te thiopurin 99.2 7.7E-11 1.7E-15 110.3 9.7 102 230-348 34-152 (213)
103 PLN02366 spermidine synthase 99.2 4.6E-10 1E-14 110.6 15.6 129 229-364 90-226 (308)
104 PRK03612 spermidine synthase; 99.2 3.3E-10 7.1E-15 119.6 15.6 130 229-366 296-437 (521)
105 PLN02781 Probable caffeoyl-CoA 99.2 2.6E-10 5.7E-15 108.3 13.3 106 230-346 68-176 (234)
106 PTZ00146 fibrillarin; Provisio 99.2 7.8E-10 1.7E-14 107.3 16.3 127 230-370 132-268 (293)
107 PRK00312 pcm protein-L-isoaspa 99.2 2.4E-10 5.1E-15 106.8 12.4 99 230-349 78-176 (212)
108 PF03848 TehB: Tellurite resis 99.2 3.4E-10 7.3E-15 103.7 13.0 104 230-348 30-133 (192)
109 PRK11188 rrmJ 23S rRNA methylt 99.2 3.2E-10 6.9E-15 105.9 13.1 133 230-374 51-190 (209)
110 PHA03411 putative methyltransf 99.2 3.6E-10 7.8E-15 108.5 13.6 124 231-367 65-208 (279)
111 PRK14904 16S rRNA methyltransf 99.2 4.1E-10 8.8E-15 116.8 15.2 115 230-350 250-379 (445)
112 TIGR03438 probable methyltrans 99.2 2.8E-10 6.2E-15 112.1 13.2 114 230-350 63-179 (301)
113 PRK05785 hypothetical protein; 99.2 3.1E-10 6.7E-15 107.3 12.7 90 231-342 52-141 (226)
114 TIGR00417 speE spermidine synt 99.2 6E-10 1.3E-14 108.1 14.6 113 230-350 72-188 (270)
115 KOG1541 Predicted protein carb 99.2 2.8E-10 6E-15 104.3 11.2 124 230-366 50-180 (270)
116 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 5.1E-10 1.1E-14 104.4 13.0 104 230-348 39-143 (223)
117 PRK10909 rsmD 16S rRNA m(2)G96 99.1 7.4E-10 1.6E-14 102.5 13.7 107 230-350 53-161 (199)
118 PRK00216 ubiE ubiquinone/menaq 99.1 5.3E-10 1.1E-14 105.4 12.9 104 231-347 52-157 (239)
119 PRK13943 protein-L-isoaspartat 99.1 4.9E-10 1.1E-14 111.0 12.8 101 230-349 80-181 (322)
120 KOG1270 Methyltransferases [Co 99.1 8.7E-11 1.9E-15 110.5 7.0 100 231-353 90-200 (282)
121 TIGR02021 BchM-ChlM magnesium 99.1 8.4E-10 1.8E-14 103.5 13.7 151 230-413 55-206 (219)
122 PRK11783 rlmL 23S rRNA m(2)G24 99.1 8.8E-10 1.9E-14 120.3 15.5 134 230-371 538-678 (702)
123 PF05401 NodS: Nodulation prot 99.1 4.3E-10 9.4E-15 102.3 10.4 121 226-365 39-172 (201)
124 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.1E-09 2.3E-14 113.6 14.8 126 230-371 297-422 (443)
125 PRK11705 cyclopropane fatty ac 99.1 5.2E-10 1.1E-14 113.7 12.0 101 230-348 167-267 (383)
126 PF01135 PCMT: Protein-L-isoas 99.1 3.5E-10 7.6E-15 105.5 9.7 101 230-349 72-173 (209)
127 PF06325 PrmA: Ribosomal prote 99.1 7.3E-10 1.6E-14 108.3 12.4 121 230-371 161-281 (295)
128 cd02440 AdoMet_MTases S-adenos 99.1 1.6E-09 3.5E-14 86.6 11.9 103 233-347 1-103 (107)
129 KOG2904 Predicted methyltransf 99.1 1.1E-09 2.5E-14 103.3 12.4 118 231-350 149-287 (328)
130 TIGR00479 rumA 23S rRNA (uraci 99.1 2.7E-09 5.8E-14 110.3 16.5 126 230-370 292-417 (431)
131 TIGR01983 UbiG ubiquinone bios 99.1 2.3E-09 4.9E-14 100.6 14.4 106 231-350 46-151 (224)
132 smart00138 MeTrc Methyltransfe 99.1 3.1E-10 6.6E-15 109.8 8.6 107 231-348 100-242 (264)
133 KOG3191 Predicted N6-DNA-methy 99.1 2.9E-09 6.2E-14 95.0 13.9 134 230-370 43-190 (209)
134 PF01596 Methyltransf_3: O-met 99.1 1.9E-09 4.2E-14 100.2 13.5 106 230-346 45-153 (205)
135 PRK03522 rumB 23S rRNA methylu 99.1 1.6E-09 3.6E-14 107.4 13.9 121 231-371 174-294 (315)
136 PRK13255 thiopurine S-methyltr 99.1 4.3E-10 9.3E-15 105.7 8.6 100 230-346 37-153 (218)
137 TIGR02085 meth_trns_rumB 23S r 99.1 4E-09 8.7E-14 107.0 16.3 121 231-371 234-354 (374)
138 PF13489 Methyltransf_23: Meth 99.1 5.4E-10 1.2E-14 98.6 8.7 96 230-350 22-117 (161)
139 COG2518 Pcm Protein-L-isoaspar 99.1 8.5E-10 1.8E-14 101.6 10.0 99 230-349 72-170 (209)
140 PRK11727 23S rRNA mA1618 methy 99.0 8.9E-09 1.9E-13 101.8 17.5 136 230-371 114-267 (321)
141 TIGR03587 Pse_Me-ase pseudamin 99.0 1.8E-09 3.9E-14 100.5 11.9 98 230-346 43-140 (204)
142 COG4122 Predicted O-methyltran 99.0 2.5E-09 5.4E-14 99.8 12.7 103 230-346 59-164 (219)
143 PLN02336 phosphoethanolamine N 99.0 1.2E-09 2.6E-14 114.3 11.6 105 230-347 37-141 (475)
144 TIGR00563 rsmB ribosomal RNA s 99.0 3.8E-09 8.2E-14 109.0 14.8 117 230-349 238-369 (426)
145 PLN02476 O-methyltransferase 99.0 4E-09 8.7E-14 102.1 13.9 106 230-346 118-226 (278)
146 PRK07580 Mg-protoporphyrin IX 99.0 6.7E-09 1.4E-13 97.7 14.5 151 230-413 63-214 (230)
147 KOG4300 Predicted methyltransf 99.0 1E-09 2.2E-14 99.8 7.6 104 231-347 77-181 (252)
148 PRK06202 hypothetical protein; 99.0 3.9E-09 8.4E-14 100.0 11.7 101 230-346 60-164 (232)
149 PLN02585 magnesium protoporphy 98.9 2.2E-08 4.8E-13 99.0 15.8 71 230-310 144-219 (315)
150 PRK05031 tRNA (uracil-5-)-meth 98.9 2E-08 4.3E-13 101.5 15.3 123 232-371 208-341 (362)
151 COG2263 Predicted RNA methylas 98.9 1.9E-08 4.1E-13 90.7 13.3 119 230-368 45-163 (198)
152 PF07021 MetW: Methionine bios 98.9 2.7E-08 5.9E-13 90.4 14.4 152 230-414 13-168 (193)
153 PRK05134 bifunctional 3-demeth 98.9 1.1E-08 2.4E-13 96.7 12.3 105 230-349 48-152 (233)
154 PLN02823 spermine synthase 98.9 2.6E-08 5.7E-13 99.2 15.3 129 230-364 103-242 (336)
155 TIGR00095 RNA methyltransferas 98.9 2.6E-08 5.7E-13 91.5 13.9 109 230-350 49-161 (189)
156 smart00650 rADc Ribosomal RNA 98.9 1.7E-08 3.7E-13 91.0 11.6 100 230-349 13-114 (169)
157 TIGR02143 trmA_only tRNA (urac 98.9 3.9E-08 8.4E-13 99.1 15.1 123 232-371 199-332 (353)
158 PHA03412 putative methyltransf 98.9 1.5E-08 3.2E-13 95.4 11.1 100 231-343 50-158 (241)
159 PLN02589 caffeoyl-CoA O-methyl 98.9 2.9E-08 6.4E-13 94.8 13.3 106 230-346 79-188 (247)
160 PF01170 UPF0020: Putative RNA 98.8 4.5E-08 9.7E-13 89.2 12.6 116 230-353 28-155 (179)
161 KOG2899 Predicted methyltransf 98.8 2.2E-08 4.8E-13 93.2 10.4 124 231-356 59-218 (288)
162 KOG2361 Predicted methyltransf 98.8 5.6E-09 1.2E-13 97.2 5.8 105 233-347 74-182 (264)
163 PF02475 Met_10: Met-10+ like- 98.8 3.2E-08 6.9E-13 91.5 10.0 99 230-346 101-200 (200)
164 TIGR02081 metW methionine bios 98.8 2E-07 4.2E-12 85.9 14.6 154 230-414 13-168 (194)
165 PF03291 Pox_MCEL: mRNA cappin 98.7 5.8E-08 1.3E-12 96.7 11.1 116 230-350 62-188 (331)
166 PF08003 Methyltransf_9: Prote 98.7 9.1E-08 2E-12 92.7 11.3 99 230-348 115-219 (315)
167 PRK13256 thiopurine S-methyltr 98.7 4.3E-08 9.4E-13 92.3 8.8 109 230-348 43-163 (226)
168 PRK11933 yebU rRNA (cytosine-C 98.7 2.7E-07 5.8E-12 95.9 15.4 132 230-365 113-262 (470)
169 KOG2915 tRNA(1-methyladenosine 98.7 2.5E-07 5.3E-12 87.6 13.5 131 230-376 105-238 (314)
170 PRK04338 N(2),N(2)-dimethylgua 98.7 1.3E-07 2.7E-12 96.1 12.5 104 232-352 59-163 (382)
171 PF01564 Spermine_synth: Sperm 98.7 2E-07 4.3E-12 89.3 12.6 128 229-364 75-211 (246)
172 PF02527 GidB: rRNA small subu 98.7 5.8E-07 1.3E-11 82.2 14.2 118 233-368 51-170 (184)
173 COG1092 Predicted SAM-dependen 98.7 1.2E-06 2.6E-11 88.6 17.4 118 230-350 217-338 (393)
174 KOG3010 Methyltransferase [Gen 98.6 4.2E-08 9.2E-13 91.4 5.6 100 232-347 35-136 (261)
175 COG2265 TrmA SAM-dependent met 98.6 6.6E-07 1.4E-11 92.1 14.0 123 231-369 294-416 (432)
176 COG0421 SpeE Spermidine syntha 98.6 7.5E-07 1.6E-11 86.6 13.3 119 228-354 74-196 (282)
177 KOG2187 tRNA uracil-5-methyltr 98.6 2.2E-07 4.8E-12 95.0 9.8 121 230-361 383-503 (534)
178 PF03602 Cons_hypoth95: Conser 98.6 5.5E-07 1.2E-11 82.4 11.5 112 230-351 42-156 (183)
179 KOG1975 mRNA cap methyltransfe 98.6 3.7E-07 8E-12 88.4 10.6 119 230-353 117-242 (389)
180 PLN02232 ubiquinone biosynthes 98.6 1.7E-07 3.7E-12 83.8 7.9 77 258-347 1-80 (160)
181 PF05724 TPMT: Thiopurine S-me 98.5 4.4E-08 9.6E-13 92.0 3.5 107 230-348 37-155 (218)
182 PF12147 Methyltransf_20: Puta 98.5 1.1E-06 2.4E-11 84.4 13.1 123 230-364 135-266 (311)
183 PF10672 Methyltrans_SAM: S-ad 98.5 9.4E-07 2E-11 86.1 12.8 116 230-350 123-240 (286)
184 COG2521 Predicted archaeal met 98.5 4.2E-07 9.1E-12 84.4 9.0 131 230-369 134-273 (287)
185 PF00891 Methyltransf_2: O-met 98.5 6.1E-07 1.3E-11 85.4 10.6 96 230-347 100-198 (241)
186 PRK00274 ksgA 16S ribosomal RN 98.5 1E-06 2.2E-11 85.7 12.3 71 230-310 42-112 (272)
187 PTZ00338 dimethyladenosine tra 98.5 4.2E-07 9.1E-12 89.2 9.5 74 230-312 36-110 (294)
188 PF09445 Methyltransf_15: RNA 98.5 3.7E-07 8E-12 81.5 8.1 77 233-315 2-79 (163)
189 TIGR00308 TRM1 tRNA(guanine-26 98.5 1.3E-06 2.7E-11 88.5 12.9 106 232-353 46-153 (374)
190 PRK14896 ksgA 16S ribosomal RN 98.5 4.6E-07 1E-11 87.4 9.0 71 230-311 29-99 (258)
191 COG1041 Predicted DNA modifica 98.5 1E-06 2.2E-11 87.0 11.0 126 230-370 197-327 (347)
192 COG0144 Sun tRNA and rRNA cyto 98.5 3.3E-06 7.2E-11 85.1 14.8 118 230-349 156-289 (355)
193 PF06080 DUF938: Protein of un 98.4 8.2E-07 1.8E-11 81.8 8.2 107 232-347 27-140 (204)
194 PF10294 Methyltransf_16: Puta 98.4 1.7E-06 3.7E-11 78.4 10.3 108 230-348 45-156 (173)
195 PF05958 tRNA_U5-meth_tr: tRNA 98.4 2.5E-06 5.3E-11 86.0 11.9 122 232-370 198-330 (352)
196 TIGR00755 ksgA dimethyladenosi 98.4 3.4E-06 7.3E-11 81.1 11.8 59 230-292 29-87 (253)
197 COG0742 N6-adenine-specific me 98.3 1.6E-05 3.5E-10 72.3 13.3 111 230-351 43-157 (187)
198 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.3 1.3E-05 2.8E-10 78.4 13.4 117 230-349 85-220 (283)
199 COG3963 Phospholipid N-methylt 98.3 7.5E-06 1.6E-10 72.5 10.5 128 204-348 28-156 (194)
200 KOG1663 O-methyltransferase [S 98.3 1.6E-05 3.4E-10 74.1 12.9 106 230-346 73-181 (237)
201 COG4976 Predicted methyltransf 98.3 3.6E-07 7.9E-12 84.6 1.9 122 232-371 127-263 (287)
202 COG2520 Predicted methyltransf 98.3 1.6E-05 3.4E-10 79.1 13.5 101 230-348 188-289 (341)
203 COG0357 GidB Predicted S-adeno 98.2 1E-05 2.2E-10 75.5 11.4 121 231-369 68-191 (215)
204 PRK00050 16S rRNA m(4)C1402 me 98.2 4.9E-06 1.1E-10 81.5 9.2 78 230-310 19-97 (296)
205 PRK04148 hypothetical protein; 98.2 6.4E-06 1.4E-10 71.1 8.7 93 230-348 16-109 (134)
206 KOG3420 Predicted RNA methylas 98.2 3.3E-06 7.1E-11 73.0 6.7 78 226-310 44-121 (185)
207 TIGR03439 methyl_EasF probable 98.2 1.7E-05 3.8E-10 78.5 12.5 115 230-350 76-199 (319)
208 PF05219 DREV: DREV methyltran 98.2 2.5E-05 5.5E-10 74.2 12.7 121 231-376 95-243 (265)
209 PF04816 DUF633: Family of unk 98.2 3.8E-05 8.2E-10 71.5 13.6 119 234-369 1-120 (205)
210 KOG1499 Protein arginine N-met 98.2 8.4E-06 1.8E-10 80.3 9.2 99 231-345 61-164 (346)
211 TIGR00478 tly hemolysin TlyA f 98.2 1.1E-05 2.3E-10 76.4 9.5 146 230-417 75-221 (228)
212 PRK11783 rlmL 23S rRNA m(2)G24 98.1 3.7E-05 8.1E-10 84.3 14.5 119 231-355 191-354 (702)
213 PF05185 PRMT5: PRMT5 arginine 98.1 1.5E-05 3.3E-10 82.6 10.7 103 231-345 187-294 (448)
214 TIGR01444 fkbM_fam methyltrans 98.1 8.9E-06 1.9E-10 70.6 7.3 59 233-291 1-59 (143)
215 TIGR02987 met_A_Alw26 type II 98.1 1.6E-05 3.5E-10 84.3 10.6 85 231-317 32-124 (524)
216 KOG1661 Protein-L-isoaspartate 98.1 1.5E-05 3.2E-10 73.2 8.5 100 230-348 82-193 (237)
217 PF13578 Methyltransf_24: Meth 98.0 1.6E-05 3.6E-10 65.6 6.0 99 235-346 1-103 (106)
218 PF05891 Methyltransf_PK: AdoM 98.0 3E-05 6.6E-10 72.0 8.2 105 231-347 56-160 (218)
219 PF02384 N6_Mtase: N-6 DNA Met 97.9 2.9E-05 6.3E-10 76.7 8.2 130 230-364 46-204 (311)
220 COG4262 Predicted spermidine s 97.9 0.00015 3.2E-09 71.6 12.5 131 230-368 289-431 (508)
221 PF01728 FtsJ: FtsJ-like methy 97.9 4.5E-05 9.8E-10 69.2 8.3 107 230-348 23-139 (181)
222 COG0116 Predicted N6-adenine-s 97.9 0.00018 3.9E-09 72.2 12.7 112 232-350 193-346 (381)
223 COG0500 SmtA SAM-dependent met 97.8 0.00043 9.3E-09 57.9 12.2 103 234-349 52-156 (257)
224 PRK00536 speE spermidine synth 97.8 0.00034 7.4E-09 67.4 12.8 114 227-363 69-190 (262)
225 COG0030 KsgA Dimethyladenosine 97.8 9.1E-05 2E-09 71.0 8.1 72 231-311 31-103 (259)
226 PF03141 Methyltransf_29: Puta 97.7 2.5E-05 5.5E-10 80.3 3.7 98 231-348 118-219 (506)
227 PF01269 Fibrillarin: Fibrilla 97.7 0.0028 6.1E-08 59.2 16.8 127 230-370 73-209 (229)
228 PF08123 DOT1: Histone methyla 97.7 0.00015 3.3E-09 67.4 8.1 104 230-346 42-156 (205)
229 PF13679 Methyltransf_32: Meth 97.6 0.00012 2.5E-09 64.0 6.6 63 230-292 25-94 (141)
230 KOG2730 Methylase [General fun 97.6 7.4E-05 1.6E-09 69.0 5.4 62 231-294 95-157 (263)
231 PF01739 CheR: CheR methyltran 97.6 6E-05 1.3E-09 69.7 4.7 107 231-348 32-175 (196)
232 KOG3045 Predicted RNA methylas 97.6 0.00026 5.7E-09 67.0 8.7 106 228-368 178-286 (325)
233 PF05148 Methyltransf_8: Hypot 97.6 0.00014 3.1E-09 67.1 6.8 108 229-369 71-181 (219)
234 KOG1500 Protein arginine N-met 97.6 0.00029 6.3E-09 68.8 9.2 98 231-345 178-279 (517)
235 PF05971 Methyltransf_10: Prot 97.6 0.00027 6E-09 69.1 8.4 85 231-318 103-190 (299)
236 PRK10611 chemotaxis methyltran 97.5 0.00015 3.2E-09 70.9 6.2 108 231-348 116-262 (287)
237 KOG0820 Ribosomal RNA adenine 97.5 0.00032 7E-09 66.9 8.1 111 230-351 58-180 (315)
238 KOG1122 tRNA and rRNA cytosine 97.4 0.0023 5E-08 64.6 13.2 117 230-349 241-372 (460)
239 COG1352 CheR Methylase of chem 97.4 0.00051 1.1E-08 66.4 8.3 103 231-348 97-241 (268)
240 COG0293 FtsJ 23S rRNA methylas 97.4 0.0024 5.2E-08 59.1 12.2 103 230-348 45-159 (205)
241 KOG1331 Predicted methyltransf 97.4 8.5E-05 1.8E-09 71.3 2.5 98 230-347 45-142 (293)
242 KOG1709 Guanidinoacetate methy 97.4 0.00054 1.2E-08 63.3 7.6 105 230-347 101-205 (271)
243 PRK01747 mnmC bifunctional tRN 97.4 0.0022 4.7E-08 70.1 13.4 126 231-369 58-223 (662)
244 COG2384 Predicted SAM-dependen 97.3 0.0028 6.1E-08 58.9 11.5 122 231-369 17-139 (226)
245 COG1889 NOP1 Fibrillarin-like 97.3 0.01 2.3E-07 54.5 14.4 127 230-370 76-211 (231)
246 KOG2940 Predicted methyltransf 97.3 0.00031 6.7E-09 65.4 4.4 102 230-347 72-173 (325)
247 PF06962 rRNA_methylase: Putat 97.2 0.0089 1.9E-07 52.1 12.9 88 256-348 1-92 (140)
248 COG4076 Predicted RNA methylas 97.2 0.00047 1E-08 62.4 5.0 100 231-345 33-132 (252)
249 PF03059 NAS: Nicotianamine sy 97.2 0.0035 7.6E-08 60.8 10.9 107 231-349 121-231 (276)
250 PF10354 DUF2431: Domain of un 97.1 0.0017 3.7E-08 58.4 7.8 132 237-369 3-148 (166)
251 COG0275 Predicted S-adenosylme 97.1 0.02 4.3E-07 55.8 15.2 63 230-293 23-86 (314)
252 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0026 5.7E-08 61.4 9.3 94 230-340 30-123 (262)
253 PRK10742 putative methyltransf 97.1 0.0036 7.7E-08 59.6 9.9 74 231-310 89-171 (250)
254 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0044 9.5E-08 63.0 11.0 119 231-365 50-173 (377)
255 COG1867 TRM1 N2,N2-dimethylgua 97.1 0.0047 1E-07 61.6 10.6 107 231-353 53-160 (380)
256 KOG1269 SAM-dependent methyltr 97.0 0.00094 2E-08 67.4 5.3 103 231-347 111-214 (364)
257 TIGR00006 S-adenosyl-methyltra 97.0 0.0059 1.3E-07 60.1 10.7 79 230-310 20-99 (305)
258 PF01861 DUF43: Protein of unk 96.8 0.025 5.5E-07 53.5 12.9 130 230-373 44-178 (243)
259 PF04672 Methyltransf_19: S-ad 96.8 0.012 2.5E-07 56.7 10.7 123 232-365 70-211 (267)
260 KOG1562 Spermidine synthase [A 96.5 0.038 8.3E-07 53.6 12.0 122 229-358 120-246 (337)
261 KOG4589 Cell division protein 96.4 0.072 1.6E-06 48.5 12.1 107 230-348 69-184 (232)
262 COG1189 Predicted rRNA methyla 96.4 0.028 6.1E-07 53.0 9.9 148 230-417 79-228 (245)
263 KOG3178 Hydroxyindole-O-methyl 96.2 0.02 4.3E-07 56.8 8.7 154 231-414 178-331 (342)
264 PF07091 FmrO: Ribosomal RNA m 96.0 0.032 6.8E-07 53.2 8.5 73 231-310 106-178 (251)
265 COG3897 Predicted methyltransf 95.9 0.022 4.8E-07 52.1 6.8 71 230-310 79-149 (218)
266 KOG2198 tRNA cytosine-5-methyl 95.8 0.089 1.9E-06 52.7 10.9 119 230-349 155-297 (375)
267 PF01795 Methyltransf_5: MraW 95.7 0.033 7.2E-07 54.9 7.5 79 230-309 20-99 (310)
268 PRK11760 putative 23S rRNA C24 95.7 0.095 2.1E-06 52.3 10.5 86 230-341 211-296 (357)
269 PF09243 Rsm22: Mitochondrial 95.7 0.12 2.6E-06 50.3 11.2 124 231-368 34-163 (274)
270 KOG3987 Uncharacterized conser 95.6 0.0056 1.2E-07 56.3 1.6 92 230-347 112-206 (288)
271 KOG1253 tRNA methyltransferase 95.5 0.021 4.7E-07 58.8 5.5 108 230-350 109-219 (525)
272 PF04989 CmcI: Cephalosporin h 95.5 0.064 1.4E-06 49.8 8.0 107 230-347 32-146 (206)
273 PF11599 AviRa: RRNA methyltra 95.1 0.28 6E-06 45.7 10.9 119 230-350 51-215 (246)
274 KOG2352 Predicted spermine/spe 95.1 0.1 2.2E-06 54.1 8.9 102 233-348 51-161 (482)
275 PF03141 Methyltransf_29: Puta 95.0 0.052 1.1E-06 56.4 6.7 120 231-369 366-487 (506)
276 PF11968 DUF3321: Putative met 94.9 0.086 1.9E-06 49.2 7.0 109 231-370 52-178 (219)
277 PF07942 N2227: N2227-like pro 94.9 0.11 2.5E-06 50.3 8.2 127 230-370 56-239 (270)
278 PF07757 AdoMet_MTase: Predict 94.8 0.026 5.5E-07 46.7 2.9 42 222-265 50-91 (112)
279 KOG3201 Uncharacterized conser 94.7 0.051 1.1E-06 48.3 4.9 127 231-368 30-161 (201)
280 PF05430 Methyltransf_30: S-ad 94.4 0.14 3E-06 43.8 6.8 77 281-370 32-108 (124)
281 KOG1596 Fibrillarin and relate 94.4 0.4 8.6E-06 45.4 10.2 125 230-368 156-290 (317)
282 COG0286 HsdM Type I restrictio 94.3 0.22 4.9E-06 52.5 9.6 117 231-348 187-326 (489)
283 PRK13699 putative methylase; P 94.3 0.23 4.9E-06 47.0 8.6 82 282-369 2-92 (227)
284 KOG2352 Predicted spermine/spe 94.0 0.18 3.8E-06 52.3 7.7 132 231-363 296-433 (482)
285 cd00315 Cyt_C5_DNA_methylase C 94.0 0.6 1.3E-05 45.4 11.1 125 233-370 2-140 (275)
286 PRK11524 putative methyltransf 93.9 0.25 5.5E-06 48.2 8.5 81 280-367 7-97 (284)
287 COG4798 Predicted methyltransf 93.9 0.26 5.6E-06 45.2 7.7 130 230-368 48-200 (238)
288 PF04445 SAM_MT: Putative SAM- 93.6 0.24 5.2E-06 47.0 7.2 79 231-318 76-163 (234)
289 cd08283 FDH_like_1 Glutathione 93.4 0.51 1.1E-05 47.9 10.0 114 230-348 184-306 (386)
290 PF02254 TrkA_N: TrkA-N domain 93.4 1 2.2E-05 37.1 10.1 106 239-367 4-111 (116)
291 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.2 0.16 3.4E-06 48.9 5.5 133 230-370 56-236 (256)
292 PF00145 DNA_methylase: C-5 cy 93.1 1.5 3.2E-05 42.9 12.4 124 233-370 2-139 (335)
293 COG4301 Uncharacterized conser 92.9 1.7 3.7E-05 41.5 11.6 113 231-352 79-197 (321)
294 PRK11524 putative methyltransf 92.8 0.24 5.1E-06 48.4 6.3 45 230-276 208-252 (284)
295 PF05711 TylF: Macrocin-O-meth 92.6 0.43 9.3E-06 45.8 7.5 123 231-368 75-233 (248)
296 KOG1501 Arginine N-methyltrans 92.4 0.27 5.8E-06 50.3 5.9 54 232-286 68-122 (636)
297 COG3129 Predicted SAM-dependen 92.1 0.23 5.1E-06 46.7 4.8 117 196-316 41-164 (292)
298 PLN02668 indole-3-acetate carb 91.7 0.81 1.8E-05 46.7 8.7 115 231-348 64-237 (386)
299 PF00107 ADH_zinc_N: Zinc-bind 91.2 0.65 1.4E-05 39.0 6.4 87 240-348 1-89 (130)
300 PF01555 N6_N4_Mtase: DNA meth 91.1 0.38 8.2E-06 44.4 5.2 41 230-272 191-231 (231)
301 PRK13699 putative methylase; P 91.0 0.59 1.3E-05 44.2 6.4 46 230-277 163-208 (227)
302 KOG4058 Uncharacterized conser 90.4 1 2.3E-05 39.6 6.7 62 230-292 72-134 (199)
303 COG1064 AdhP Zn-dependent alco 89.6 1.2 2.6E-05 44.6 7.5 90 231-347 167-258 (339)
304 KOG2793 Putative N2,N2-dimethy 89.4 3.5 7.5E-05 39.5 10.2 107 231-349 87-200 (248)
305 PF12692 Methyltransf_17: S-ad 88.8 1.5 3.2E-05 38.6 6.5 103 232-346 30-132 (160)
306 COG4121 Uncharacterized conser 88.8 2.3 4.9E-05 40.8 8.5 129 231-369 59-225 (252)
307 COG5459 Predicted rRNA methyla 88.3 0.71 1.5E-05 46.1 4.8 110 231-347 114-224 (484)
308 COG1063 Tdh Threonine dehydrog 88.1 2.5 5.3E-05 42.6 8.8 98 232-348 170-269 (350)
309 PRK03659 glutathione-regulated 87.7 4.7 0.0001 43.8 11.2 95 239-353 406-503 (601)
310 COG1568 Predicted methyltransf 87.7 4.7 0.0001 39.2 9.7 125 230-367 152-282 (354)
311 KOG2078 tRNA modification enzy 86.8 0.59 1.3E-05 47.7 3.4 62 230-293 249-312 (495)
312 PHA01634 hypothetical protein 86.7 1.8 4E-05 37.1 5.7 47 230-277 28-74 (156)
313 KOG2912 Predicted DNA methylas 85.7 1.5 3.3E-05 43.2 5.4 57 234-290 106-163 (419)
314 PF07279 DUF1442: Protein of u 85.1 15 0.00033 34.4 11.4 76 230-310 41-122 (218)
315 PF03492 Methyltransf_7: SAM d 85.0 5.9 0.00013 39.7 9.6 22 230-251 16-37 (334)
316 PF05206 TRM13: Methyltransfer 83.7 2 4.3E-05 41.5 5.3 63 230-293 18-86 (259)
317 cd08254 hydroxyacyl_CoA_DH 6-h 83.2 12 0.00027 36.3 10.9 95 231-347 166-262 (338)
318 PRK10669 putative cation:proto 83.1 12 0.00026 40.2 11.5 106 239-368 423-531 (558)
319 TIGR00675 dcm DNA-methyltransf 83.1 12 0.00025 37.2 10.6 121 234-369 1-136 (315)
320 PF02636 Methyltransf_28: Puta 82.2 1.7 3.6E-05 41.6 4.2 46 231-276 19-72 (252)
321 COG1565 Uncharacterized conser 81.1 3.8 8.2E-05 41.3 6.2 53 224-276 71-131 (370)
322 KOG2798 Putative trehalase [Ca 80.7 3 6.6E-05 41.1 5.3 38 230-269 150-187 (369)
323 PRK03562 glutathione-regulated 80.0 15 0.00032 40.1 11.0 99 232-352 401-502 (621)
324 PF03446 NAD_binding_2: NAD bi 78.0 14 0.00029 32.7 8.4 105 237-369 7-116 (163)
325 PF11899 DUF3419: Protein of u 76.2 8.2 0.00018 39.4 7.1 64 276-348 271-334 (380)
326 PF01408 GFO_IDH_MocA: Oxidore 76.0 41 0.0009 27.4 10.5 107 234-367 3-115 (120)
327 TIGR00497 hsdM type I restrict 76.0 14 0.00031 39.1 9.2 113 231-346 218-353 (501)
328 KOG2651 rRNA adenine N-6-methy 74.8 5.1 0.00011 40.6 5.0 41 231-272 154-194 (476)
329 PF03721 UDPG_MGDP_dh_N: UDP-g 74.8 11 0.00024 34.3 7.1 121 235-365 4-139 (185)
330 KOG2671 Putative RNA methylase 74.7 7.5 0.00016 38.9 6.1 111 230-348 208-354 (421)
331 KOG0024 Sorbitol dehydrogenase 74.5 16 0.00035 36.4 8.3 99 230-347 169-272 (354)
332 cd05188 MDR Medium chain reduc 74.2 28 0.00061 32.2 10.0 97 230-348 134-232 (271)
333 PF06859 Bin3: Bicoid-interact 74.1 2.8 6.1E-05 34.9 2.6 27 328-354 24-51 (110)
334 KOG1227 Putative methyltransfe 74.0 1.8 3.8E-05 42.5 1.6 74 230-310 194-269 (351)
335 PRK09880 L-idonate 5-dehydroge 73.4 27 0.00058 34.6 10.0 94 231-347 170-265 (343)
336 PF05050 Methyltransf_21: Meth 73.3 6.8 0.00015 33.9 5.1 38 236-273 1-42 (167)
337 PRK09496 trkA potassium transp 73.1 40 0.00087 34.7 11.6 74 232-313 232-307 (453)
338 KOG2360 Proliferation-associat 72.6 6.2 0.00013 40.0 5.0 63 230-292 213-276 (413)
339 COG3510 CmcI Cephalosporin hyd 72.0 19 0.00041 33.3 7.5 106 230-347 69-179 (237)
340 COG0677 WecC UDP-N-acetyl-D-ma 71.7 54 0.0012 33.7 11.4 124 232-363 10-144 (436)
341 KOG0822 Protein kinase inhibit 71.4 16 0.00034 38.7 7.8 100 231-346 368-476 (649)
342 TIGR03451 mycoS_dep_FDH mycoth 70.7 37 0.00081 33.7 10.4 97 231-347 177-275 (358)
343 PRK15057 UDP-glucose 6-dehydro 69.7 83 0.0018 32.2 12.7 118 236-365 5-135 (388)
344 COG0270 Dcm Site-specific DNA 69.2 52 0.0011 32.8 10.9 126 231-367 3-141 (328)
345 cd05278 FDH_like Formaldehyde 68.6 43 0.00092 32.8 10.2 97 231-347 168-266 (347)
346 PRK11064 wecC UDP-N-acetyl-D-m 66.6 93 0.002 32.1 12.5 122 233-364 5-136 (415)
347 PRK15182 Vi polysaccharide bio 66.4 46 0.00099 34.5 10.2 104 232-348 7-120 (425)
348 cd08230 glucose_DH Glucose deh 66.0 40 0.00087 33.4 9.5 93 230-347 172-268 (355)
349 PRK09496 trkA potassium transp 65.7 63 0.0014 33.2 11.2 96 234-349 3-100 (453)
350 cd08281 liver_ADH_like1 Zinc-d 65.1 49 0.0011 33.1 10.0 96 231-347 192-289 (371)
351 cd08237 ribitol-5-phosphate_DH 64.6 42 0.0009 33.3 9.3 91 230-347 163-255 (341)
352 PLN02353 probable UDP-glucose 64.2 88 0.0019 33.0 11.9 122 233-363 3-143 (473)
353 cd06259 YdcF-like YdcF-like. Y 63.4 35 0.00076 29.3 7.5 70 9-78 2-95 (150)
354 KOG2782 Putative SAM dependent 63.1 5 0.00011 37.6 2.1 52 224-275 37-88 (303)
355 PRK10458 DNA cytosine methylas 62.9 1.2E+02 0.0025 32.0 12.4 133 231-369 88-255 (467)
356 PRK15001 SAM-dependent 23S rib 62.2 65 0.0014 32.9 10.1 109 233-363 47-157 (378)
357 TIGR03201 dearomat_had 6-hydro 61.4 39 0.00085 33.5 8.4 42 230-272 166-208 (349)
358 TIGR01202 bchC 2-desacetyl-2-h 61.1 46 0.00099 32.4 8.7 85 231-347 145-230 (308)
359 cd08285 NADP_ADH NADP(H)-depen 60.6 82 0.0018 31.0 10.6 96 231-346 167-264 (351)
360 TIGR03366 HpnZ_proposed putati 60.3 75 0.0016 30.3 9.9 96 231-347 121-217 (280)
361 PRK08293 3-hydroxybutyryl-CoA 60.2 94 0.002 30.1 10.7 97 233-347 5-119 (287)
362 PF03686 UPF0146: Uncharacteri 60.2 59 0.0013 27.9 7.9 89 231-348 14-102 (127)
363 PRK10206 putative oxidoreducta 60.2 46 0.001 33.3 8.7 70 233-315 3-76 (344)
364 cd08261 Zn_ADH7 Alcohol dehydr 59.8 71 0.0015 31.2 9.9 97 230-347 159-257 (337)
365 PLN03154 putative allyl alcoho 59.4 1E+02 0.0022 30.6 11.0 96 230-347 158-257 (348)
366 KOG1099 SAM-dependent methyltr 59.0 47 0.001 31.7 7.6 102 231-347 42-162 (294)
367 TIGR03026 NDP-sugDHase nucleot 57.4 1E+02 0.0022 31.6 10.9 105 234-348 3-120 (411)
368 PTZ00357 methyltransferase; Pr 57.2 41 0.00089 37.0 7.8 102 232-343 702-830 (1072)
369 PRK11559 garR tartronate semia 57.0 83 0.0018 30.4 9.7 106 234-367 5-116 (296)
370 PRK09424 pntA NAD(P) transhydr 56.7 1.1E+02 0.0023 32.7 10.9 42 230-272 164-206 (509)
371 PRK07904 short chain dehydroge 56.6 49 0.0011 31.1 7.8 80 231-311 8-95 (253)
372 cd05292 LDH_2 A subgroup of L- 56.3 2.1E+02 0.0045 28.1 14.1 115 234-359 3-127 (308)
373 PRK10537 voltage-gated potassi 55.3 1E+02 0.0022 31.6 10.3 104 239-368 246-352 (393)
374 COG0673 MviM Predicted dehydro 54.9 2.1E+02 0.0045 28.0 12.3 72 232-315 4-79 (342)
375 PRK07102 short chain dehydroge 53.8 64 0.0014 29.8 8.1 59 233-292 3-63 (243)
376 cd08232 idonate-5-DH L-idonate 53.7 1.1E+02 0.0024 29.8 10.1 95 231-347 166-261 (339)
377 COG5379 BtaA S-adenosylmethion 53.1 54 0.0012 32.3 7.3 76 259-348 291-366 (414)
378 KOG0023 Alcohol dehydrogenase, 52.5 78 0.0017 31.7 8.4 96 231-347 182-278 (360)
379 PF11312 DUF3115: Protein of u 52.5 25 0.00054 34.8 5.0 113 231-347 87-241 (315)
380 PRK10834 vancomycin high tempe 52.3 53 0.0011 31.4 7.1 60 3-62 41-122 (239)
381 COG4627 Uncharacterized protei 52.2 21 0.00045 31.9 3.9 81 232-349 4-87 (185)
382 KOG2811 Uncharacterized conser 52.0 29 0.00063 35.1 5.4 60 232-292 184-246 (420)
383 PRK00299 sulfur transfer prote 51.9 31 0.00068 26.9 4.7 57 301-370 9-65 (81)
384 PF01555 N6_N4_Mtase: DNA meth 51.7 9 0.00019 35.0 1.8 41 328-368 36-78 (231)
385 PRK02006 murD UDP-N-acetylmura 51.6 47 0.001 35.0 7.4 43 6-48 387-430 (498)
386 PRK05808 3-hydroxybutyryl-CoA 51.5 1.1E+02 0.0025 29.3 9.6 96 233-349 5-119 (282)
387 PLN02740 Alcohol dehydrogenase 51.2 1.4E+02 0.003 30.0 10.6 95 230-347 198-299 (381)
388 cd08238 sorbose_phosphate_red 51.0 1.2E+02 0.0026 30.9 10.2 100 231-347 176-287 (410)
389 KOG2920 Predicted methyltransf 51.0 13 0.00028 36.2 2.8 37 230-267 116-152 (282)
390 KOG4174 Uncharacterized conser 51.0 98 0.0021 29.9 8.5 135 230-367 56-211 (282)
391 cd08234 threonine_DH_like L-th 50.6 1.3E+02 0.0028 29.1 10.0 95 231-347 160-256 (334)
392 PLN02827 Alcohol dehydrogenase 50.2 1.6E+02 0.0034 29.7 10.7 96 230-347 193-294 (378)
393 cd08255 2-desacetyl-2-hydroxye 50.2 1.2E+02 0.0026 28.5 9.4 90 231-347 98-189 (277)
394 PRK07326 short chain dehydroge 50.0 68 0.0015 29.3 7.5 59 231-292 6-66 (237)
395 PRK11579 putative oxidoreducta 49.2 2.2E+02 0.0049 28.2 11.6 69 232-315 5-76 (346)
396 TIGR02825 B4_12hDH leukotriene 48.8 2.2E+02 0.0047 27.6 11.3 94 230-347 138-236 (325)
397 COG0863 DNA modification methy 48.5 42 0.00091 32.3 6.1 47 230-278 222-268 (302)
398 PRK07530 3-hydroxybutyryl-CoA 47.8 2.5E+02 0.0055 27.1 11.4 98 232-348 5-119 (292)
399 TIGR01771 L-LDH-NAD L-lactate 47.7 2.8E+02 0.0061 27.2 12.4 108 237-355 2-120 (299)
400 COG0287 TyrA Prephenate dehydr 47.5 1E+02 0.0022 30.1 8.4 107 232-365 4-112 (279)
401 PRK00683 murD UDP-N-acetylmura 47.4 50 0.0011 33.9 6.7 41 5-45 311-352 (418)
402 KOG1098 Putative SAM-dependent 47.0 19 0.0004 38.9 3.4 100 230-345 44-155 (780)
403 PF02826 2-Hacid_dh_C: D-isome 46.8 1.6E+02 0.0034 26.3 9.1 108 230-364 35-144 (178)
404 TIGR02819 fdhA_non_GSH formald 46.8 2E+02 0.0042 29.3 10.9 105 232-347 187-298 (393)
405 cd05285 sorbitol_DH Sorbitol d 46.8 2E+02 0.0043 28.1 10.7 96 231-347 163-264 (343)
406 PRK07806 short chain dehydroge 46.8 2.3E+02 0.0051 25.9 11.2 116 231-348 6-134 (248)
407 COG1748 LYS9 Saccharopine dehy 46.7 1.5E+02 0.0032 30.5 9.7 57 232-292 2-59 (389)
408 cd08236 sugar_DH NAD(P)-depend 46.4 1.9E+02 0.0042 28.1 10.6 95 231-347 160-257 (343)
409 TIGR02818 adh_III_F_hyde S-(hy 45.7 2.1E+02 0.0044 28.6 10.8 96 230-347 185-286 (368)
410 PRK08945 putative oxoacyl-(acy 45.2 94 0.002 28.7 7.7 60 230-290 11-72 (247)
411 PRK10309 galactitol-1-phosphat 45.1 2E+02 0.0043 28.2 10.4 97 231-347 161-259 (347)
412 cd03422 YedF YedF is a bacteri 45.0 50 0.0011 24.8 4.7 42 330-371 15-56 (69)
413 KOG2741 Dimeric dihydrodiol de 44.8 1.6E+02 0.0035 29.6 9.4 65 242-315 15-84 (351)
414 PRK07454 short chain dehydroge 44.8 1.2E+02 0.0025 27.9 8.3 60 231-292 6-67 (241)
415 PLN02819 lysine-ketoglutarate 44.8 1.9E+02 0.0042 33.7 11.2 78 231-315 569-660 (1042)
416 PRK13302 putative L-aspartate 44.8 1.7E+02 0.0037 28.2 9.6 108 232-367 7-118 (271)
417 PRK08703 short chain dehydroge 44.6 85 0.0018 28.9 7.3 59 231-290 6-66 (239)
418 cd08293 PTGR2 Prostaglandin re 43.5 2E+02 0.0043 28.1 10.1 94 232-347 156-253 (345)
419 cd03420 SirA_RHOD_Pry_redox Si 43.3 77 0.0017 23.7 5.5 40 331-370 16-55 (69)
420 cd08278 benzyl_alcohol_DH Benz 43.3 2.7E+02 0.0058 27.7 11.1 94 231-347 187-284 (365)
421 TIGR02822 adh_fam_2 zinc-bindi 43.2 2.2E+02 0.0047 27.9 10.3 88 230-347 165-253 (329)
422 cd05281 TDH Threonine dehydrog 42.8 2.2E+02 0.0048 27.8 10.3 96 231-347 164-261 (341)
423 TIGR01692 HIBADH 3-hydroxyisob 42.4 3.1E+02 0.0066 26.5 11.1 104 240-369 3-112 (288)
424 PRK08213 gluconate 5-dehydroge 42.3 1.3E+02 0.0029 27.9 8.3 61 230-292 11-73 (259)
425 PRK02705 murD UDP-N-acetylmura 42.2 74 0.0016 32.9 7.1 42 7-48 349-391 (459)
426 cd08295 double_bond_reductase_ 42.1 2.9E+02 0.0062 26.9 11.0 96 230-347 151-250 (338)
427 PRK05396 tdh L-threonine 3-deh 42.0 2.1E+02 0.0045 27.9 10.0 98 231-348 164-263 (341)
428 PRK07066 3-hydroxybutyryl-CoA 41.2 2.3E+02 0.0051 28.2 10.1 97 232-348 8-119 (321)
429 cd08245 CAD Cinnamyl alcohol d 41.0 1.3E+02 0.0029 29.0 8.4 94 230-348 162-256 (330)
430 cd05565 PTS_IIB_lactose PTS_II 41.0 1.1E+02 0.0024 24.9 6.5 80 237-354 5-84 (99)
431 COG1255 Uncharacterized protei 40.9 1.5E+02 0.0033 25.1 7.2 67 231-314 14-81 (129)
432 cd00300 LDH_like L-lactate deh 40.6 3.6E+02 0.0078 26.3 12.8 110 237-356 4-123 (300)
433 TIGR00006 S-adenosyl-methyltra 40.5 50 0.0011 32.7 5.1 45 318-363 197-255 (305)
434 TIGR01761 thiaz-red thiazoliny 40.4 2.8E+02 0.006 28.0 10.5 66 231-309 3-70 (343)
435 PRK12490 6-phosphogluconate de 40.3 3.6E+02 0.0077 26.2 11.7 105 240-367 7-114 (299)
436 PRK07502 cyclohexadienyl dehyd 39.7 2.1E+02 0.0046 27.8 9.6 90 232-346 7-98 (307)
437 cd05564 PTS_IIB_chitobiose_lic 39.6 1.5E+02 0.0032 23.7 7.0 79 237-353 4-82 (96)
438 PF03514 GRAS: GRAS domain fam 39.3 3.4E+02 0.0073 27.6 11.1 62 224-286 104-180 (374)
439 PF01206 TusA: Sulfurtransfera 39.0 74 0.0016 23.5 4.9 42 330-371 16-57 (70)
440 PF02153 PDH: Prephenate dehyd 39.0 1.4E+02 0.003 28.5 7.9 79 244-348 1-79 (258)
441 KOG0821 Predicted ribosomal RN 38.1 51 0.0011 31.2 4.4 61 230-292 50-110 (326)
442 PRK07417 arogenate dehydrogena 37.9 2.4E+02 0.0051 27.2 9.4 83 234-344 3-87 (279)
443 PRK09590 celB cellobiose phosp 37.9 2.3E+02 0.0049 23.3 9.0 82 237-354 6-87 (104)
444 PF03269 DUF268: Caenorhabditi 37.9 1.5E+02 0.0033 26.7 7.2 20 329-348 92-111 (177)
445 cd00291 SirA_YedF_YeeD SirA, Y 37.7 60 0.0013 23.8 4.1 39 332-370 17-55 (69)
446 TIGR00692 tdh L-threonine 3-de 37.5 3.2E+02 0.0069 26.6 10.6 96 231-347 162-260 (340)
447 PRK06125 short chain dehydroge 37.5 1.6E+02 0.0035 27.4 8.1 78 231-310 7-88 (259)
448 PF14740 DUF4471: Domain of un 37.3 68 0.0015 31.5 5.4 73 282-368 202-284 (289)
449 PRK07523 gluconate 5-dehydroge 37.2 1.6E+02 0.0035 27.3 8.0 61 230-292 9-71 (255)
450 PRK07677 short chain dehydroge 37.1 1.5E+02 0.0033 27.4 7.8 58 232-291 2-61 (252)
451 PRK08410 2-hydroxyacid dehydro 37.0 1.4E+02 0.003 29.6 7.7 86 230-346 144-230 (311)
452 PRK00050 16S rRNA m(4)C1402 me 36.9 85 0.0018 30.9 6.1 35 328-363 216-251 (296)
453 PRK06124 gluconate 5-dehydroge 36.7 1.8E+02 0.0038 27.0 8.2 61 230-292 10-72 (256)
454 PRK07666 fabG 3-ketoacyl-(acyl 36.4 1.8E+02 0.004 26.5 8.2 60 231-292 7-68 (239)
455 cd05291 HicDH_like L-2-hydroxy 36.3 4.2E+02 0.0091 25.9 14.1 113 233-355 2-124 (306)
456 cd08294 leukotriene_B4_DH_like 36.3 3.2E+02 0.0069 26.2 10.2 94 231-347 144-240 (329)
457 PRK09260 3-hydroxybutyryl-CoA 36.0 2E+02 0.0043 27.7 8.6 96 234-349 4-118 (288)
458 PRK06172 short chain dehydroge 35.9 1.8E+02 0.0038 26.9 8.1 60 231-292 7-68 (253)
459 PRK11018 hypothetical protein; 35.7 87 0.0019 24.1 4.8 57 301-370 8-64 (78)
460 PRK12384 sorbitol-6-phosphate 35.5 1.8E+02 0.0039 27.0 8.1 60 232-292 3-65 (259)
461 cd08300 alcohol_DH_class_III c 35.2 4.3E+02 0.0093 26.2 11.2 96 230-347 186-287 (368)
462 PF07991 IlvN: Acetohydroxy ac 35.1 1.8E+02 0.0039 26.2 7.2 93 231-350 4-97 (165)
463 PTZ00142 6-phosphogluconate de 35.0 5.6E+02 0.012 27.0 12.3 114 236-368 6-122 (470)
464 PRK05786 fabG 3-ketoacyl-(acyl 34.9 1.9E+02 0.0042 26.2 8.1 115 231-348 5-135 (238)
465 cd08241 QOR1 Quinone oxidoredu 34.8 3.7E+02 0.008 25.2 10.3 96 230-347 139-237 (323)
466 COG0604 Qor NADPH:quinone redu 34.7 2.1E+02 0.0045 28.4 8.7 96 231-348 143-241 (326)
467 PLN02702 L-idonate 5-dehydroge 34.7 4E+02 0.0086 26.3 10.8 99 231-347 182-284 (364)
468 PRK06130 3-hydroxybutyryl-CoA 34.4 3.8E+02 0.0083 26.0 10.5 98 233-348 6-115 (311)
469 PRK07814 short chain dehydroge 34.0 2E+02 0.0044 26.9 8.2 61 230-292 9-71 (263)
470 PLN03209 translocon at the inn 33.5 5.3E+02 0.011 28.0 11.8 78 230-310 79-166 (576)
471 PRK05867 short chain dehydroge 33.4 1.9E+02 0.0041 26.8 7.8 61 230-292 8-70 (253)
472 PF01795 Methyltransf_5: MraW 33.1 64 0.0014 32.1 4.5 36 328-364 221-257 (310)
473 COG1062 AdhC Zn-dependent alco 33.0 2.5E+02 0.0055 28.4 8.6 95 230-347 185-284 (366)
474 PRK06949 short chain dehydroge 32.9 2.2E+02 0.0047 26.3 8.1 60 231-292 9-70 (258)
475 PRK07576 short chain dehydroge 32.8 2.2E+02 0.0048 26.7 8.2 60 231-292 9-70 (264)
476 PRK09548 PTS system ascorbate- 32.4 2.2E+02 0.0047 31.0 8.6 55 232-310 507-561 (602)
477 TIGR00518 alaDH alanine dehydr 32.4 2.9E+02 0.0063 28.0 9.4 41 231-272 167-208 (370)
478 PRK04308 murD UDP-N-acetylmura 32.3 1.3E+02 0.0029 31.0 7.1 41 6-46 342-383 (445)
479 cd08233 butanediol_DH_like (2R 32.3 3.7E+02 0.008 26.3 10.0 97 231-347 173-271 (351)
480 PRK08643 acetoin reductase; Va 32.3 2.1E+02 0.0046 26.4 8.0 59 232-292 3-63 (256)
481 cd08279 Zn_ADH_class_III Class 32.1 3.6E+02 0.0078 26.6 10.0 95 231-347 183-281 (363)
482 PRK08251 short chain dehydroge 32.1 2.4E+02 0.0051 25.9 8.2 60 232-292 3-65 (248)
483 cd03423 SirA SirA (also known 32.1 81 0.0017 23.5 4.0 41 331-371 16-56 (69)
484 cd08263 Zn_ADH10 Alcohol dehyd 32.1 4.2E+02 0.0092 26.1 10.5 95 231-347 188-286 (367)
485 PRK06181 short chain dehydroge 31.9 2.2E+02 0.0048 26.4 8.1 58 233-292 3-62 (263)
486 PRK08507 prephenate dehydrogen 31.8 2.2E+02 0.0047 27.3 8.0 84 234-345 3-88 (275)
487 PRK06914 short chain dehydroge 30.8 2.4E+02 0.0053 26.5 8.2 61 231-292 3-66 (280)
488 PRK08339 short chain dehydroge 30.8 2.4E+02 0.0052 26.5 8.1 61 231-292 8-70 (263)
489 PRK00066 ldh L-lactate dehydro 30.8 5.3E+02 0.012 25.4 14.5 115 231-355 6-129 (315)
490 PRK07024 short chain dehydroge 30.7 1.8E+02 0.0039 27.0 7.2 58 232-292 3-62 (257)
491 cd08286 FDH_like_ADH2 formalde 30.7 2.7E+02 0.0058 27.1 8.7 96 232-347 168-265 (345)
492 cd08301 alcohol_DH_plants Plan 30.6 5E+02 0.011 25.6 10.8 95 231-347 188-288 (369)
493 PRK08217 fabG 3-ketoacyl-(acyl 30.5 2.5E+02 0.0055 25.6 8.1 59 231-291 5-65 (253)
494 COG1052 LdhA Lactate dehydroge 30.2 2E+02 0.0043 28.7 7.5 86 231-345 146-233 (324)
495 TIGR00075 hypD hydrogenase exp 29.7 99 0.0021 31.4 5.2 47 244-290 126-176 (369)
496 PRK15062 hydrogenase isoenzyme 29.7 99 0.0022 31.3 5.2 64 244-307 120-189 (364)
497 TIGR03215 ac_ald_DH_ac acetald 29.6 2E+02 0.0042 28.2 7.3 70 233-314 3-75 (285)
498 PRK09291 short chain dehydroge 29.5 3E+02 0.0065 25.3 8.5 76 232-310 3-80 (257)
499 PRK09135 pteridine reductase; 29.1 2.7E+02 0.006 25.3 8.1 61 231-292 6-69 (249)
500 PRK12480 D-lactate dehydrogena 29.0 3.6E+02 0.0078 26.8 9.2 87 231-347 146-233 (330)
No 1
>PLN03034 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=4.7e-62 Score=490.48 Aligned_cols=214 Identities=31% Similarity=0.540 Sum_probs=198.1
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014708 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (420)
Q Consensus 2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (420)
+++|+||+++|+||+||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 262 ~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~ 341 (481)
T PLN03034 262 VSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLL 341 (481)
T ss_pred HcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014708 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (420)
Q Consensus 82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (420)
||+||+|++++ .+.+..+++.++||++||++||||+|++.|+++|.+|+||+||||||+||+++|+.||++|+++++++
T Consensus 342 lPvD~v~a~~~~~~~~~~~~~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~akTI~WNGPmGvFE~~~Fa~GT~~l~~aia~~ 421 (481)
T PLN03034 342 LPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAEL 421 (481)
T ss_pred CCceEEEecccCCCCCeEEeehhcCCCCCEEEecCHHHHHHHHHHHhhCCEEEEECCcccccCCcchHHHHHHHHHHHHh
Confidence 99999999876 33444566889999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccCCcc
Q 014708 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPF 218 (420)
Q Consensus 161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~~p~ 218 (420)
++.++ +||+||++ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.+.+|+
T Consensus 422 ~~~~a-~sIvGGGDt~aAi~~~g~~~~~shiST--GGGA~Le~LeGk~LPgv~aL~~~~~~ 479 (481)
T PLN03034 422 SGKGV-TTIIGGGDSVAAVEKVGVADVMSHIST--GGGASLELLEGKELPGVVALDEATPV 479 (481)
T ss_pred hcCCC-eEEEcCcHHHHHHHHcCCccceeEEeC--cHHHHHHHHcCCCCcHHHHHhhcCCc
Confidence 64444 78888765 4457888888999999 89999999999999999999988764
No 2
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-62 Score=476.51 Aligned_cols=205 Identities=29% Similarity=0.478 Sum_probs=187.3
Q ss_pred CCCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014708 1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITI 80 (420)
Q Consensus 1 ~~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i 80 (420)
++++|+||+++|+|||||||||+||+||+++||+|||||+||||||+|+|++||+|++|.+.++.|++||+++++ +|
T Consensus 185 ~l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tFl~A~G~~vG~sl~E~~~~~~Ak~ll~k~~~---~I 261 (395)
T COG0126 185 ALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDGAKELLEKAKD---KI 261 (395)
T ss_pred HhcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhCC---cE
Confidence 368999999999999999999999999999999999999999999999999999999999999999999998655 89
Q ss_pred ecceeEEEecCCCCCc-eeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHh
Q 014708 81 LYPKDFWCTKIHHPNQ-VEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK 159 (420)
Q Consensus 81 ~lP~D~~~~~~~~~~~-~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~ 159 (420)
+||+|++|++++.... ...+ . +||++||++||||+|++.|++.|..|+||+|||||||||+++|+.||.++++++++
T Consensus 262 ~lPvD~~v~~~f~~~~~~~~~-~-~i~~~~~~lDIGp~Ti~~~~~~i~~AktivwNGP~GVfE~~~Fa~GT~~v~~aia~ 339 (395)
T COG0126 262 VLPVDVVVAKEFSRDAPATVK-L-EIPDDLMILDIGPKTIELFAEIIKGAKTIVWNGPMGVFEFENFAKGTEEVAKAIAK 339 (395)
T ss_pred ECcceeEEccccccccccccc-c-CCCCCccccccCHHHHHHHHHHHhhCCEEEEeCCccceecchhhhhHHHHHHHHHh
Confidence 9999999999974433 3333 3 99999999999999999999999999999999999999999999999999999988
Q ss_pred hhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccC
Q 014708 160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215 (420)
Q Consensus 160 ~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~ 215 (420)
++ ..+||+||++ ++..+|+.++++|+|| ||||+++||+|+.+|++++|.+.
T Consensus 340 ~~---~a~SiiGGGdt~aAi~~~G~~d~~shIST--GGGAsLe~leGk~LPgv~aL~~~ 393 (395)
T COG0126 340 SS---GAFSIIGGGDTAAAIDKLGLADKISHIST--GGGASLEFLEGKELPGVEALEES 393 (395)
T ss_pred cC---CCeEEECCcHHHHHHHHcCccccCceEec--CchHHHHHhcCCCcchHHHHhhc
Confidence 62 2588888875 4457889889999999 99999999999999999998764
No 3
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=100.00 E-value=7.2e-62 Score=484.25 Aligned_cols=209 Identities=27% Similarity=0.533 Sum_probs=193.8
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014708 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (420)
Q Consensus 2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (420)
+++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|++++++++++|+
T Consensus 184 l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~sl~e~~~i~~a~~il~~a~~~~~~I~ 263 (397)
T cd00318 184 LENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIV 263 (397)
T ss_pred HcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHhHhcCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCCC-CCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014708 82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (420)
Q Consensus 82 lP~D~~~~~~~~-~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (420)
||+|++|++++. +.+..+++.++||++||++||||+|++.|+++|..|+||+||||||+||.++|+.||++|++++++.
T Consensus 264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~ 343 (397)
T cd00318 264 LPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAEVIRKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAA 343 (397)
T ss_pred CCceEEEeeccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCCcCccCCcccHHHHHHHHHHHHh
Confidence 999999998753 3444566889999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccc
Q 014708 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 213 (420)
Q Consensus 161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~ 213 (420)
+++++ +|++||++ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.
T Consensus 344 ~~~~a-~sivGGGdt~aa~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgi~aL~ 396 (397)
T cd00318 344 TKAGA-FSIIGGGDTAAAAEKFGLADKISHVST--GGGASLELLEGKELPGVAALE 396 (397)
T ss_pred ccCCC-EEEEeCcHHHHHHHHcCCCCCceEEcC--chHHHHHHHcCCCCchHHhhc
Confidence 64444 88888875 4456888888999999 999999999999999999886
No 4
>PLN02282 phosphoglycerate kinase
Probab=100.00 E-value=1.5e-61 Score=481.75 Aligned_cols=210 Identities=30% Similarity=0.523 Sum_probs=194.0
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014708 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (420)
Q Consensus 2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (420)
+++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 187 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~ 266 (401)
T PLN02282 187 VANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLL 266 (401)
T ss_pred hcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEe
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCCC-CCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014708 82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (420)
Q Consensus 82 lP~D~~~~~~~~-~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (420)
||+||+|++++. +.+..++++++||++||++||||+|++.|+++|..|+||+||||||+||+++|+.||++|++++++.
T Consensus 267 lPvD~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~ 346 (401)
T PLN02282 267 LPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAEL 346 (401)
T ss_pred CCceEEEecccCCCCCeEEeehhcCCCCCeeeccCHHHHHHHHHHHhhCCEEEEECCcCCccCcchhHHHHHHHHHHHHh
Confidence 999999998753 3344566889999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014708 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214 (420)
Q Consensus 161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~ 214 (420)
++.++ +|++||++ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.+
T Consensus 347 t~~~a-~sivGGGdt~aA~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgi~aL~~ 400 (401)
T PLN02282 347 SGKGV-TTIIGGGDSVAAVEKVGLADKMSHIST--GGGASLELLEGKPLPGVLALDD 400 (401)
T ss_pred hcCCC-EEEEeCcHHHHHHHHcCCcCCceEEeC--chHHHHHHHcCCCcchHHHhhc
Confidence 64444 78888765 4457888888999999 8999999999999999999864
No 5
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=100.00 E-value=1.2e-60 Score=474.28 Aligned_cols=206 Identities=28% Similarity=0.509 Sum_probs=192.0
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014708 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (420)
Q Consensus 2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (420)
+++|+||+++|+||+||||||.+|+||+++||+|++||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 180 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~ 259 (389)
T PRK00073 180 LENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIP 259 (389)
T ss_pred hcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCCCCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhhh
Q 014708 82 YPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVS 161 (420)
Q Consensus 82 lP~D~~~~~~~~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~~ 161 (420)
||+|++|++++.+.+..+++.++||++||++||||+|++.|+++|..|+||+||||||+||.++|+.||++|++++++.+
T Consensus 260 lPvD~vv~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~~ 339 (389)
T PRK00073 260 LPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEST 339 (389)
T ss_pred CCCeeEEeeccCCCceEEeEcccCCCCCeeeecCHHHHHHHHHHHhhCCEEEEECCCCccccccchHHHHHHHHHHHhcC
Confidence 99999999875444445678899999999999999999999999999999999999999999999999999999998853
Q ss_pred cCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccc
Q 014708 162 QGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 213 (420)
Q Consensus 162 ~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~ 213 (420)
.+|++||++ ++..+|+.++++|+|| ||||+++||+|+.+|++++|.
T Consensus 340 ----a~sivGGGdt~aa~~~~g~~~~~shiST--GGGA~Le~LeGk~LPgv~aL~ 388 (389)
T PRK00073 340 ----AFSIIGGGDTAAAVEKLGLADKFSHIST--GGGASLEFLEGKELPGVAALE 388 (389)
T ss_pred ----CeEEEcCCHHHHHHHHcCCCCCccEEcC--CcHHHHHHHcCCCcchHHHhc
Confidence 378888774 4457888899999999 999999999999999999885
No 6
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=3.6e-60 Score=474.03 Aligned_cols=210 Identities=25% Similarity=0.532 Sum_probs=191.8
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHh-cCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014708 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI 80 (420)
Q Consensus 2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a-~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i 80 (420)
+++|+||+++|+||+||||||.+|+||+++||+|++||+||||||+| +|++||+|++|++.++.|++++++++++|++|
T Consensus 201 ~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I 280 (417)
T PTZ00005 201 LENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKI 280 (417)
T ss_pred hcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEE
Confidence 57999999999999999999999999999999999999999999999 68999999999999999999999999999999
Q ss_pred ecceeEEEecCCC-CCceeEe-cCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014708 81 LYPKDFWCTKIHH-PNQVEIF-PSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC 158 (420)
Q Consensus 81 ~lP~D~~~~~~~~-~~~~~~~-~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a 158 (420)
+||+|++|++++. +.+..++ +.++||++||++||||+|++.|+++|..|+||+||||||+||.++|+.||++|+++++
T Consensus 281 ~lPvD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akTV~wNGP~GvFE~~~F~~GT~~i~~aia 360 (417)
T PTZ00005 281 HLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVV 360 (417)
T ss_pred eCCceEEEecccCCCCCeEEecCccCCCCCCEEeccCHHHHHHHHHHHhhCCEEEEECCCccccCCcchHHHHHHHHHHH
Confidence 9999999998753 3333344 5678999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014708 159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214 (420)
Q Consensus 159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~ 214 (420)
+.++.+ .+||+||++ ++..+|+.++++|+|| ||||+++||+|+.+|++++|.+
T Consensus 361 ~~t~~~-a~sivGGGdt~aAi~~~g~~~~~shvST--GGGA~Le~LeGk~LPgv~aL~~ 416 (417)
T PTZ00005 361 KATEKG-AITIVGGGDTASLVEKTGAANKVSHVST--GGGASLELLEGKELPGVVALSN 416 (417)
T ss_pred HhccCC-CEEEEeCcHHHHHHHHcCCCCCCceEcC--chHHHHHHHcCCCcchHHHhhc
Confidence 866443 488888764 4457888888999999 9999999999999999999864
No 7
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-60 Score=443.87 Aligned_cols=210 Identities=27% Similarity=0.514 Sum_probs=193.8
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhc-CCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014708 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDAASDLIQFARDKHITI 80 (420)
Q Consensus 2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~-g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i 80 (420)
+++|.|||++|+||+||+|||++|+||+++||.+||||+||||||+++ |++||+|++|+++.+.+++|+++|+++|++|
T Consensus 199 lenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMaftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i 278 (416)
T KOG1367|consen 199 LENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMAFTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRI 278 (416)
T ss_pred HcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCceeehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEE
Confidence 689999999999999999999999999999999999999999999997 6999999999999999999999999999999
Q ss_pred ecceeEEEecCC-CCCceeEecC-CCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHH
Q 014708 81 LYPKDFWCTKIH-HPNQVEIFPS-HGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC 158 (420)
Q Consensus 81 ~lP~D~~~~~~~-~~~~~~~~~~-~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a 158 (420)
+||+||++++.+ +++....++. +.||+|||+|||||+|++.|++.+.+++||+||||+|+||.+.|++||.+|.+++.
T Consensus 279 ~lPvDfv~adkf~~da~s~~~ta~~gIp~g~mgLD~GPes~k~fa~~v~~aKtIvWNGP~GvfE~~~Fa~GTeal~d~~v 358 (416)
T KOG1367|consen 279 LLPVDFVIADKFAEDANSKQVTAEEGIPDGWMGLDIGPESIKMFAEAVATAKTIVWNGPPGVFEFEKFAAGTEALMDALV 358 (416)
T ss_pred EeeeeeeeeccccCccccceeccccCCCCCccccccChHHHHHHHHHHhhhhEEEecCCCcccchhhhhhhHHHHHHHHH
Confidence 999999999886 4444444444 47999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCcccccc
Q 014708 159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214 (420)
Q Consensus 159 ~~~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~ 214 (420)
+++.++. .+++||++ ++.++|.++++||+|| ||||++|.|+|+.+||+.+|..
T Consensus 359 ~~t~~G~-~tiiGGGDTata~~k~g~~dk~ShVST--GGGasLeLLeGK~LPGv~aLs~ 414 (416)
T KOG1367|consen 359 KLTGKGV-TTIIGGGDTATACKKFGTEDKVSHVST--GGGASLELLEGKVLPGVDALSE 414 (416)
T ss_pred HHhcCCc-EEEEcCCcHHHHHHHhCcccceeeeec--CCceehhhhcCCcCcchhhhcc
Confidence 9887765 67777653 5578999999999999 9999999999999999998865
No 8
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=5.8e-58 Score=480.92 Aligned_cols=208 Identities=26% Similarity=0.510 Sum_probs=192.6
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014708 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (420)
Q Consensus 2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (420)
+++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 183 l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~ 262 (645)
T PRK13962 183 LANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLL 262 (645)
T ss_pred HcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014708 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (420)
Q Consensus 82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (420)
||+|++|++++ .+.+..+++.++||++||++||||+|++.|++.+..|+||+||||||+||.++|+.||++|+++++..
T Consensus 263 lPvD~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~ 342 (645)
T PRK13962 263 LPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFAKKIADAKTIVWNGPMGVFEFDNFAEGTRAVAEAVAES 342 (645)
T ss_pred CCcEEEeecccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCCccccCCCchHHHHHHHHHHHhc
Confidence 99999999876 33444566889999999999999999999999999999999999999999999999999999999863
Q ss_pred hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccccCCCccccccC
Q 014708 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215 (420)
Q Consensus 161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~~lPgv~aL~~~ 215 (420)
+ .+|++||++ ++..+|+.++++|+|| ||||+++||+|+.+|++++|.+.
T Consensus 343 ---~-~~svvGGGdt~aa~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgv~aL~~s 394 (645)
T PRK13962 343 ---G-AITIIGGGDSAAAVEKLGFADKMSHIST--GGGASLEFLEGKVLPGIACLLDK 394 (645)
T ss_pred ---C-CeEEECchHHHHHHHHcCCccCceEEcC--ChHHHHHHHcCCccHHHHHHhhc
Confidence 2 488888875 4446788889999999 99999999999999999999654
No 9
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=100.00 E-value=3.9e-57 Score=450.42 Aligned_cols=197 Identities=28% Similarity=0.533 Sum_probs=174.9
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHhcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014708 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (420)
Q Consensus 2 ~~~~~~p~~~i~GG~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (420)
+++|+||+++|+||+||||||++|+||+++||+|++||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 184 ~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~~e~~~i~~a~~ll~~~~~~g~~i~ 263 (384)
T PF00162_consen 184 LENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSLVEEDLIEEAKELLEKAKDRGVKIV 263 (384)
T ss_dssp HHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSSCHGGGHHHHHHHHHHHHHTT-EEE
T ss_pred hcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccchhhhhHHHHHHHHHHHHhcCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCC-CCCceeEecCCCCCCCCCcccCCcccHHHHHHHhcCCCeEEEeccceEEEcCCCCchHHHHHHHHHhh
Q 014708 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (420)
Q Consensus 82 lP~D~~~~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~~~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (420)
||+||+|++++ .+++.++++.++||++|+++||||+|++.|++.+..|+||+||||||+||.++|+.||++|++++++.
T Consensus 264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktv~wNGP~GvfE~~~F~~GT~~l~~aia~~ 343 (384)
T PF00162_consen 264 LPVDFVVADEFSDGARVEVVPADEIPDGWMILDIGPKTIELFSEIIKKAKTVFWNGPMGVFEIENFAEGTRALAKAIAKS 343 (384)
T ss_dssp --SEEEEESSSSTTSCEEEEETTGBCTTSEEEEE-HHHHHHHHHHHHT-SEEEEES-SS-TTSGGGCHHHHHHHHHHHHH
T ss_pred EEEEEeehhcccCCCCcEeccccccCCCCeeeccCHHHHHHHHHHHhCCCeEEEECCcccCchhhhhHHHHHHHHHHHhc
Confidence 99999999986 44556677899999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCeeEechhH---HHHHhhcCCCcceeeeecCCCeeeeeeccc
Q 014708 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGR 204 (420)
Q Consensus 161 ~~~~~~~~i~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~g~ 204 (420)
. .++++||++ ++..+|+.++++|+|| ||||+++||+|+
T Consensus 344 ~----a~sivGGGdt~~a~~~~g~~~~~shvST--GGGA~L~~LeGk 384 (384)
T PF00162_consen 344 G----AFSIVGGGDTAAAIKKFGLADKFSHVST--GGGAFLEFLEGK 384 (384)
T ss_dssp T----SEEEEESHHHHHHHHHTTGGGGSSEEES--SSHHHHHHHTTS
T ss_pred C----CeEEEcccHHHHHHHhcCcccceeEEec--CcHHHHHHhcCC
Confidence 2 478888775 3446788889999999 999999999986
No 10
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=100.00 E-value=5.6e-38 Score=289.33 Aligned_cols=188 Identities=26% Similarity=0.508 Sum_probs=155.5
Q ss_pred cccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhh
Q 014708 218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV 297 (420)
Q Consensus 218 ~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~ 297 (420)
..++|.+.|++ +.+++||||||+|.+++.+|+++|+.+|+|+|++...+..|.+++.+.+++|+.++++|+..++..++
T Consensus 6 ~~~~~~~~f~~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 6 EPLDWQEIFGN-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF 84 (195)
T ss_dssp CTTCHHHHHTS-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred CccCHHHHcCC-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence 35689999987 57899999999999999999999999999999999999999999999999999999999999877776
Q ss_pred ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHc-CCceeEe-eccc
Q 014708 298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY-GKGKLVL-VQDE 375 (420)
Q Consensus 298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~-g~~~~~~-~~D~ 375 (420)
+++++|.|+++|||||||++|+|||+++++|++.++++|+|||.|++.||++.|+++|++.+.+. +.+.... ..+
T Consensus 85 --~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~~- 161 (195)
T PF02390_consen 85 --PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESDD- 161 (195)
T ss_dssp --TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TESS-
T ss_pred --cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCcc-
Confidence 57999999999999999999999999999999999999999999999999999999999999994 5443211 112
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014708 376 CDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP 416 (420)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~ 416 (420)
.++. +.++..+.|+||++|+++|++||++.|+|+
T Consensus 162 ----~~~~---~~~~~~~~T~yE~k~~~~G~~i~~~~f~k~ 195 (195)
T PF02390_consen 162 ----LHES---PFDDDYIPTKYERKWLAEGKPIYRLIFKKV 195 (195)
T ss_dssp ----GGCS---CCCTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred ----cccC---CCCCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence 1111 112368999999999999999999999985
No 11
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=100.00 E-value=5.7e-38 Score=293.98 Aligned_cols=190 Identities=26% Similarity=0.362 Sum_probs=166.3
Q ss_pred ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc
Q 014708 219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA 298 (420)
Q Consensus 219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~ 298 (420)
..+|.+.|+++..+++||||||+|.+++.+|+++|+.+|+|||++...+..|.+++.+.+++|+++++.||..+++.++
T Consensus 37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~- 115 (227)
T COG0220 37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI- 115 (227)
T ss_pred cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC-
Confidence 3568889988656899999999999999999999999999999999999999999999999999999999999977665
Q ss_pred cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecccccc
Q 014708 299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT 378 (420)
Q Consensus 299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~ 378 (420)
+++++|.|+++|||||||++|+|||++++.|+..+.+.|+|||.|+|+||++.|++++.....++.........|.
T Consensus 116 -~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~--- 191 (227)
T COG0220 116 -PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDL--- 191 (227)
T ss_pred -CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhcccccc---
Confidence 4679999999999999999999999999999999999999999999999999999996665655544444444442
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014708 379 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 417 (420)
Q Consensus 379 ~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~ 417 (420)
+. |....+.++.|+||+++.+.|++|+++.+++..
T Consensus 192 --~~--~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~ 226 (227)
T COG0220 192 --HY--NLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK 226 (227)
T ss_pred --cc--ccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence 21 233455689999999999999999999999864
No 12
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=100.00 E-value=4.4e-33 Score=257.06 Aligned_cols=185 Identities=22% Similarity=0.388 Sum_probs=160.6
Q ss_pred ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc
Q 014708 219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA 298 (420)
Q Consensus 219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~ 298 (420)
+.+|.+.|++ +.+++||||||+|.++..+|+++|+.+|+|+|+++++++.|++++.+.+++|++++++|+.++++..+
T Consensus 6 ~~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~- 83 (194)
T TIGR00091 6 KPDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF- 83 (194)
T ss_pred CCCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-
Confidence 4578888885 57899999999999999999999999999999999999999999999999999999999998754444
Q ss_pred cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcC-CceeEeeccccc
Q 014708 299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKLVLVQDECD 377 (420)
Q Consensus 299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g-~~~~~~~~D~~~ 377 (420)
+++++|.|+++|||||++++|+++|++++++++.++++|||||.|++.||+..|++++++.+.+++ |.......|
T Consensus 84 -~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~--- 159 (194)
T TIGR00091 84 -PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTD--- 159 (194)
T ss_pred -CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccc---
Confidence 356899999999999999999999999999999999999999999999999999999999999987 332222222
Q ss_pred cccCCCCCCCCCC---CCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014708 378 TKTNQGGWLGENS---FGVRSDWEQHVIDRGAPMYRLMLSKPS 417 (420)
Q Consensus 378 ~~~~~~~~~~~~~---~~~~T~~E~~~~~~G~~i~~~~~~k~~ 417 (420)
+ ...+ ..+.|+||++|+++|++||+++++|+.
T Consensus 160 -------~-~~~~~~~~~~~T~~E~~~~~~g~~i~~~~~~~~~ 194 (194)
T TIGR00091 160 -------L-NNSPLSRPRNMTEYEQRFERLGHPVFDLCFERLP 194 (194)
T ss_pred -------c-CCCcccccCcCCHHHHHHHHCCCCeEEEEEEECC
Confidence 1 1122 234799999999999999999999863
No 13
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=100.00 E-value=1.7e-31 Score=266.83 Aligned_cols=175 Identities=18% Similarity=0.299 Sum_probs=154.8
Q ss_pred cccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCe
Q 014708 224 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGK 303 (420)
Q Consensus 224 ~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~ 303 (420)
+.|...+++++||||||+|.+++.+|+++|+.+|+|+|+++.+++.|.+++.+.+++|++++++|+..++ +.+ ++++
T Consensus 116 ~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll-~~~--~~~s 192 (390)
T PRK14121 116 DFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL-ELL--PSNS 192 (390)
T ss_pred HHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh-hhC--CCCc
Confidence 3444446789999999999999999999999999999999999999999999999999999999998874 334 5889
Q ss_pred EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCC
Q 014708 304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQG 383 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~ 383 (420)
+|.|+++|||||+|++| ||++++.++++++++|+|||.+++.||+..|++++++.+.+++......
T Consensus 193 ~D~I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~------------ 258 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI------------ 258 (390)
T ss_pred eeEEEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec------------
Confidence 99999999999999988 7999999999999999999999999999999999999998886543211
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014708 384 GWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 417 (420)
Q Consensus 384 ~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~ 417 (420)
...++..+.|+||++|+++|++||++.+++.+
T Consensus 259 --~~~~~~~i~TkyE~r~~~~G~~Iy~l~~~~~~ 290 (390)
T PRK14121 259 --KKNAQLEVSSKYEDRWKKQNKDIYDLRIYNLE 290 (390)
T ss_pred --ccCCCCCCCCHHHHHHHHCCCCEEEEEEEeCC
Confidence 11244578899999999999999999999965
No 14
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.96 E-value=1e-29 Score=265.63 Aligned_cols=264 Identities=15% Similarity=0.200 Sum_probs=186.6
Q ss_pred cccCCcccHHHHHHHhcCCCeEEEeccce--EEEcCCCCchHHHHHHHHHhhhcCCCCeeEechhHHHHHhhcCCCccee
Q 014708 111 PVDIGPRSVEEITSTITKCKKVIWVGPVK--FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGL 188 (420)
Q Consensus 111 ~~DiGp~T~~~~~~~~~~~~~i~wnGp~G--~~e~~~f~~GT~~l~~~~a~~~~~~~~~~i~gg~~~~~~~~~~~~~~~~ 188 (420)
.++-|+...+.|...+..+.++. -|-| ++|.. +++ ..++.+.+.. . + +..+.- ...+.|. +.+-.+
T Consensus 237 AL~gg~dGl~~~~~il~~a~~~L--~~gG~l~lEig-~~q-~~~v~~~~~~---~-g-~~~~~~--~~D~~g~-~R~v~~ 304 (506)
T PRK01544 237 ALFAEEDGLQAYFIIAENAKQFL--KPNGKIILEIG-FKQ-EEAVTQIFLD---H-G-YNIESV--YKDLQGH-SRVILI 304 (506)
T ss_pred HhcCCccHHHHHHHHHHHHHHhc--cCCCEEEEEEC-Cch-HHHHHHHHHh---c-C-CCceEE--EecCCCC-ceEEEe
Confidence 57778888888888888777654 3434 55653 332 2233333222 1 1 111100 0001111 111111
Q ss_pred eeecCCCeeeeeeccc-cCCCcccc-ccCCc-cccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChH
Q 014708 189 NMVESGSAVWEFLKGR-MLPGVSAL-DRAFP-FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGK 265 (420)
Q Consensus 189 st~~GGGa~le~l~g~-~lPgv~aL-~~~~p-~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~ 265 (420)
+.. +=+-+.....|+ ..++++++ ...+| +.+++...|+. +++++||||||+|.+++.+|+.+|+.+|+|+|++..
T Consensus 305 ~~~-~~~rs~~rr~g~~~~~~q~~~~e~~~p~~~i~~eklf~~-~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~ 382 (506)
T PRK01544 305 SPI-NLNRSYARRIGKSLSGVQQNLLDNELPKYLFSKEKLVNE-KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLN 382 (506)
T ss_pred ccc-cCCcceeccCCCCCCHHHHHHHHhhhhhhCCCHHHhCCC-CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHH
Confidence 110 111233334443 33444444 44455 45566666765 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014708 266 LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 345 (420)
Q Consensus 266 ~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~ 345 (420)
.+..|.+++.+.+++|+++++.|+..+ ...+ +++++|.|+++|||||||++|+|||+++++|++.+++.|||||.|+
T Consensus 383 ~~~~~~~~~~~~~l~N~~~~~~~~~~~-~~~~--~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 383 GVANVLKLAGEQNITNFLLFPNNLDLI-LNDL--PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCHHHH-HHhc--CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999998765 4455 5889999999999999999999999999999999999999999999
Q ss_pred EEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 014708 346 LQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHV 401 (420)
Q Consensus 346 ~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~~~~~~~T~~E~~~ 401 (420)
+.||+++|++++++.+.+++.+.. ...+ .|+...+..+.|+||+|.
T Consensus 460 ~~TD~~~y~~~~~~~~~~~~~f~~-~~~~---------~~~~~~~~~~~T~yE~k~ 505 (506)
T PRK01544 460 FASDIENYFYEAIELIQQNGNFEI-INKN---------DYLKPHDNYVITKYHQKA 505 (506)
T ss_pred EEcCCHHHHHHHHHHHHhCCCeEe-cccc---------cccCCCCCCCCchhccCc
Confidence 999999999999999999874432 1222 233345678999999974
No 15
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.93 E-value=3.5e-25 Score=205.66 Aligned_cols=172 Identities=22% Similarity=0.371 Sum_probs=151.1
Q ss_pred cccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcCh-hhhhhhh
Q 014708 218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA-TSTFRSI 296 (420)
Q Consensus 218 ~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da-~~~~~~~ 296 (420)
....|...|.. ++..|||+|||+|.++..+++.+|..+|+|+|+|+++++.|++++...++.|+.++++|+ ..+ +..
T Consensus 29 ~~~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l-~~~ 106 (202)
T PRK00121 29 APLDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL-LDM 106 (202)
T ss_pred CCCCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH-HHH
Confidence 56788888887 688999999999999999999999999999999999999999999888888999999999 544 333
Q ss_pred hccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecccc
Q 014708 297 VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEC 376 (420)
Q Consensus 297 ~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~ 376 (420)
+ +++++|.|+++||+||.+..|++++...+.+++++.++|||||.|++.+++..+..++++.++++|+... +. |
T Consensus 107 ~--~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~-~~-~-- 180 (202)
T PRK00121 107 F--PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV-SE-A-- 180 (202)
T ss_pred c--CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc-cc-c--
Confidence 3 4778999999999999888888888778899999999999999999999999999999999999997642 21 2
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHH
Q 014708 377 DTKTNQGGWLGENSFGVRSDWEQHVID 403 (420)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~T~~E~~~~~ 403 (420)
.+|...++..+.|+||++|+.
T Consensus 181 ------~~~~~~~~~~~~~~~~~~~~~ 201 (202)
T PRK00121 181 ------GDYVPRPEGRPMTEYERKGLR 201 (202)
T ss_pred ------hhhcccCccCCCcHHHHHhhc
Confidence 356677899999999999975
No 16
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=99.80 E-value=1.3e-19 Score=162.77 Aligned_cols=192 Identities=21% Similarity=0.342 Sum_probs=155.3
Q ss_pred cccccccccCC---C--CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-------CCcEEEE
Q 014708 218 FDIDWSAAYHD---P--AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-------ITNGYFI 285 (420)
Q Consensus 218 ~~~~~~~~f~~---~--~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-------l~nv~~~ 285 (420)
...+|+..|+. + ...-+.|||||.|.+++.|+..||+..++|+||.-+..+..+++++... +.|+.++
T Consensus 43 ~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vl 122 (249)
T KOG3115|consen 43 QEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVL 122 (249)
T ss_pred HhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceee
Confidence 45678876643 1 2367999999999999999999999999999999999999988887654 7899999
Q ss_pred EcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcC
Q 014708 286 ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 365 (420)
Q Consensus 286 ~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g 365 (420)
+.++..+++++| ..++++.+++.||||++|.+.++.|++...++.++.-+|++||.++..||+....+||...+++++
T Consensus 123 r~namk~lpn~f--~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 123 RTNAMKFLPNFF--EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred eccchhhccchh--hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 999999988887 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeeccccccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014708 366 KGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC 418 (420)
Q Consensus 366 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~~ 418 (420)
.+.....++ +.+.+ ...-..-.|+.-.+..++|...|...|+++..
T Consensus 201 lfe~lt~ee-----~~~d~--~v~~~~~~teeg~kv~r~~g~~f~a~f~r~~~ 246 (249)
T KOG3115|consen 201 LFERLTEEE-----EENDP--CVELLSNATEEGKKVARNGGKKFVAVFRRIPN 246 (249)
T ss_pred Hhhhcchhh-----hcCCc--chhhhhhhhhhcccccccCCceeeeeeeeccC
Confidence 775321111 00000 00001223555566677777888888888765
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=1.6e-16 Score=149.85 Aligned_cols=105 Identities=17% Similarity=0.276 Sum_probs=91.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..|||||||||.++..+++..+..+++|+|+|+.|++.|++++.+.+..|++|+++||+++ |+++++||.+++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-----Pf~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL-----PFPDNSFDAVTI 125 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-----CCCCCccCEEEe
Confidence 478999999999999999999999999999999999999999999998888899999999987 447999999998
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.|.--+..+ .+..|++++|+|||||++.+.
T Consensus 126 ~fglrnv~d--------~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 126 SFGLRNVTD--------IDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred eehhhcCCC--------HHHHHHHHHHhhcCCeEEEEE
Confidence 763322111 148999999999999987763
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.62 E-value=4.5e-15 Score=123.80 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=85.4
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+.+|||||||+|.++..+++++|..+++|+|+|+.+++.|++++.+.+. .|++++++|+ ..... ....||.|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~----~~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD----FLEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT----TSSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc----cCCCCCEEEE
Confidence 5789999999999999999999999999999999999999999965554 6899999999 32111 3557999998
Q ss_pred eC-CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.. .-.+ -.+. -...++++.+.+.|+|||+|++.+
T Consensus 77 ~~~~~~~--~~~~---~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHF--LLPL---DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGG--CCHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccc--ccch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75 1111 0111 112478999999999999999865
No 19
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.62 E-value=1.7e-15 Score=143.49 Aligned_cols=105 Identities=16% Similarity=0.269 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|||+|||+|..+..++++ .|+..++|+|+|+.|++.|++++...+..|+.++++|+.++ |+++++||.|+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-----p~~d~sfD~v~ 121 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-----PFPDNSFDAVT 121 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-----cCCCCceeEEE
Confidence 4679999999999999999988 47789999999999999999999998888999999999987 33689999999
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+.|--....+ ..+.+++++|+|||||++.+.
T Consensus 122 ~~fglrn~~d--------~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 122 CSFGLRNFPD--------RERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp EES-GGG-SS--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhhHHhhCC--------HHHHHHHHHHHcCCCeEEEEe
Confidence 8762111100 137899999999999998764
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=2e-14 Score=131.75 Aligned_cols=120 Identities=20% Similarity=0.189 Sum_probs=101.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.+|||||||+|..++.+++..|+.+|+|+|+|+.+++.|++++++.+++|++++++|+.++ + .+++||.|+++
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~-----~-~~~~fDlV~~~ 119 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF-----G-QEEKFDVVTSR 119 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC-----C-CCCCccEEEEc
Confidence 67899999999999999999999999999999999999999999999998999999999875 1 25689999986
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~ 369 (420)
.-.+ -+.+++.+++.|||||+|++.. ...+...+.+..+.+|+...
T Consensus 120 ~~~~------------~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 120 AVAS------------LSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKALGGKVE 165 (187)
T ss_pred cccC------------HHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhcCceEe
Confidence 3111 1479999999999999999874 44566667777777888754
No 21
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.58 E-value=2.3e-14 Score=129.43 Aligned_cols=110 Identities=19% Similarity=0.335 Sum_probs=90.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
....+||+|||+|.+++.+++..|+.+++++|+++.+++.|++++..+++.++++++.|..+.. .+.+||.|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~------~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL------PDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC------CTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc------cccceeEEEE
Confidence 3678999999999999999999999999999999999999999999999988999999997652 3689999999
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
| .|+....+.. ..+..+++++..+.|||||.|++..
T Consensus 105 N--PP~~~~~~~~-~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 105 N--PPFHAGGDDG-LDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp -----SBTTSHCH-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--cchhcccccc-hhhHHHHHHHHHHhccCCCEEEEEe
Confidence 8 4443333211 2234689999999999999997765
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.57 E-value=3.7e-14 Score=125.46 Aligned_cols=109 Identities=15% Similarity=0.297 Sum_probs=88.6
Q ss_pred CCCEEEEEcCCccHHHHHHH-HhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA-~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||+|||+|.++..++ +.+|..+++|+|+|+.+++.|++++.+.+++|++|.++|+.++ +..+ +..||.|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~---~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQEL---EEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCS---STTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-cccc---CCCeeEEE
Confidence 46889999999999999999 5588999999999999999999999999999999999999985 3212 27899999
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
+..+-.+... ...+++.+.+.|+++|.+++..-.
T Consensus 79 ~~~~l~~~~~--------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPD--------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSH--------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccC--------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 8733221110 137899999999999999986533
No 23
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.57 E-value=9.8e-14 Score=127.11 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=100.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||+|||+|.+++.+++++|+.+++|+|+|+.+++.|++++.+.++.+++++++|+... .+.++|.|++
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-------~~~~~D~v~~ 103 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-------LPGKADAIFI 103 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-------cCcCCCEEEE
Confidence 467899999999999999999999999999999999999999999888888899999998432 2457999988
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
...... -+++++.+.+.|+|||++++..-......++.+.++++|+...+
T Consensus 104 ~~~~~~-----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 104 GGSGGN-----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCCccC-----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcce
Confidence 643211 13688999999999999988642344456788889999986544
No 24
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.55 E-value=2.2e-13 Score=125.78 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=95.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+.+|||+|||+|.++..+++..|+..++|+|+|+.+++.+++++.+.++.|++++++|+.+.++.. ...+|.+++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~----~~~~d~v~~ 115 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL----APAPDRVCI 115 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC----CCCCCEEEE
Confidence 4678999999999999999988899999999999999999999999989889999999997643221 223466666
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCC
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 366 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~ 366 (420)
....++ ..+++.+.+.|+|||+|++.+..........+.+++.+.
T Consensus 116 ~~~~~~------------~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 116 EGGRPI------------KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred ECCcCH------------HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 432221 478999999999999999987655555556667766543
No 25
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.55 E-value=8.2e-14 Score=127.20 Aligned_cols=120 Identities=22% Similarity=0.217 Sum_probs=95.2
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.++||+|||+|.+++.+|...|+.+++|+|+|+.+++.+++++++.++.|++++++|+.++. .+++||.|+++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~------~~~~fD~I~s~ 116 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ------HEEQFDVITSR 116 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc------ccCCccEEEeh
Confidence 678999999999999999999999999999999999999999999899889999999998751 35689999875
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHH---cCCcee
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE---YGKGKL 369 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~---~g~~~~ 369 (420)
. + +. -+.+++.+.+.|+|||.+++.... ....++....++ .|+..+
T Consensus 117 ~---~----~~-----~~~~~~~~~~~LkpgG~lvi~~~~-~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 117 A---L----AS-----LNVLLELTLNLLKVGGYFLAYKGK-KYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred h---h----hC-----HHHHHHHHHHhcCCCCEEEEEcCC-CcHHHHHHHHHhhhhcCceEe
Confidence 2 1 10 136888899999999999987543 333444444444 565543
No 26
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.54 E-value=1.6e-13 Score=130.81 Aligned_cols=135 Identities=19% Similarity=0.309 Sum_probs=107.6
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+..|||+|||+|.++..+++.+|+.+++|+|+++.+++.|++++...+++|+.++++|+.+.+ .++++|.|+++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL------PGGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC------cCCceeEEEEC
Confidence 468999999999999999999999999999999999999999999889889999999987632 36789999987
Q ss_pred CCCCCCCCcc------------hhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 311 CPNPDFNRPE------------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 311 fpdp~~k~~~------------~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
. |+..... +...+ ....+++.+.+.|+|||.+++.+.+. ..+.+.+.+.++|+..+.
T Consensus 162 p--Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 162 P--PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-QGEAVRALFEAAGFADVE 238 (251)
T ss_pred C--CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-HHHHHHHHHHhCCCCceE
Confidence 3 3322110 01111 12478899999999999999987553 456788889999988766
Q ss_pred eecc
Q 014708 371 LVQD 374 (420)
Q Consensus 371 ~~~D 374 (420)
+..|
T Consensus 239 ~~~d 242 (251)
T TIGR03534 239 TRKD 242 (251)
T ss_pred EEeC
Confidence 6666
No 27
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=1.5e-13 Score=125.10 Aligned_cols=130 Identities=19% Similarity=0.238 Sum_probs=100.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||+|||+|.++..+++..+ +++|+|+|+.+++.+++++...+. +++++++|+.+. ...+||.|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------~~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG-------VRGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-------cCCcccEEEE
Confidence 356799999999999999999876 899999999999999999987775 689999998664 2458999988
Q ss_pred eCCCCCCCCcchh---------------hhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 310 QCPNPDFNRPEHR---------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 310 ~fpdp~~k~~~~k---------------~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
+ .|++...... .+....++++++.++|||||.+++.+.......++.+.+++.||....+
T Consensus 89 n--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 89 N--PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred C--CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 7 3443221100 1122468999999999999999987654443567888999999876543
No 28
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.3e-13 Score=134.07 Aligned_cols=132 Identities=17% Similarity=0.333 Sum_probs=106.3
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 312 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp 312 (420)
.|||+|||||++++.+|++.|+++|+|+|+|+.+++.|++|+..+++.|+.++++|...- ..+.||.|.+|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-------~~~~fDlIVsN-- 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-------LRGKFDLIVSN-- 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------cCCceeEEEeC--
Confidence 799999999999999999999999999999999999999999999987888888877553 24589999998
Q ss_pred CCCCCCc-----------chhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCC-ceeEee
Q 014708 313 NPDFNRP-----------EHRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK-GKLVLV 372 (420)
Q Consensus 313 dp~~k~~-----------~~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~-~~~~~~ 372 (420)
.|+.... .+...+ +..+++..+.+.|+|||.+.++++. .+.+.+.+.+.+.++ ..+...
T Consensus 184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-TQGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-CcHHHHHHHHHhcCCceEEEEE
Confidence 5654333 122122 3478999999999999999999864 346779999999994 434444
Q ss_pred cc
Q 014708 373 QD 374 (420)
Q Consensus 373 ~D 374 (420)
+|
T Consensus 263 ~d 264 (280)
T COG2890 263 KD 264 (280)
T ss_pred ec
Confidence 44
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.53 E-value=1.5e-13 Score=129.71 Aligned_cols=106 Identities=15% Similarity=0.210 Sum_probs=88.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|++++...++.|+.++++|+.++ + + +++++|.|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~--~--~~~~fD~V~ 119 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-P--F--DDNSFDYVT 119 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-C--C--CCCCccEEE
Confidence 46799999999999999999885 6789999999999999999999888888999999999775 1 2 467899998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+.+.-.+..+ ..++++++.++|+|||++++..
T Consensus 120 ~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 120 IGFGLRNVPD--------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EecccccCCC--------HHHHHHHHHHHcCcCeEEEEEE
Confidence 8754333221 1378999999999999998764
No 30
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.53 E-value=3.3e-13 Score=121.52 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=105.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+++|||||||..++++|...|..++++||.++++++..++|+++.+.+|+.++.+||.+.+++ .+ ++|.+|+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~----~~-~~daiFI 108 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD----LP-SPDAIFI 108 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC----CC-CCCEEEE
Confidence 478999999999999999998899999999999999999999999999999999999999877531 22 7999999
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~ 367 (420)
.-.-. .+.+|+.+...|||||++++..-..+....+.+.++++|++
T Consensus 109 GGg~~------------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 109 GGGGN------------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred CCCCC------------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 74322 14899999999999999999766666666788999999984
No 31
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.53 E-value=1.9e-13 Score=133.52 Aligned_cols=127 Identities=10% Similarity=0.178 Sum_probs=101.3
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
..+|||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++|+..+++. ++.++++|+.+.+ ++.+||.|++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~------~~~~fD~Iv~ 195 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL------PGRKYDLIVS 195 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc------CCCCccEEEE
Confidence 46899999999999999999999999999999999999999999998885 6999999986532 3457999998
Q ss_pred eCCCCCCCCcc-----------hhhh--------hhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014708 310 QCPNPDFNRPE-----------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 310 ~fpdp~~k~~~-----------~k~R--------l~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~ 367 (420)
+ .|+..... +... -....+++.+.+.|+|||+++++++. .. +.+.+.+.+++|.
T Consensus 196 N--PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 196 N--PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM-EALEEAYPDVPFT 268 (284)
T ss_pred C--CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH-HHHHHHHHhCCCc
Confidence 7 44432111 1111 12357899999999999999999976 33 5788888888765
No 32
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.52 E-value=2.3e-13 Score=132.99 Aligned_cols=134 Identities=13% Similarity=0.225 Sum_probs=105.0
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
.+|||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++++..+++.+ +.|+++|+.+.+ ++..||.|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~------~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL------AGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC------cCCCccEEEEC
Confidence 58999999999999999999999999999999999999999999888865 999999986532 23479999887
Q ss_pred CCCCCCCCcc-----------hhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHH-HcCCceeE
Q 014708 311 CPNPDFNRPE-----------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL-EYGKGKLV 370 (420)
Q Consensus 311 fpdp~~k~~~-----------~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~-~~g~~~~~ 370 (420)
.|+....+ +...+ ....++..+.+.|+|||++++++.+ .+.+.+.+.+. +.+|....
T Consensus 190 --PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 190 --PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSLKELLRIKFTWYDVE 266 (284)
T ss_pred --CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHHhcCCCceeE
Confidence 44432221 11111 3467899999999999999999865 44566777777 46776666
Q ss_pred eecc
Q 014708 371 LVQD 374 (420)
Q Consensus 371 ~~~D 374 (420)
+.+|
T Consensus 267 ~~~D 270 (284)
T TIGR00536 267 NGRD 270 (284)
T ss_pred EecC
Confidence 6667
No 33
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.52 E-value=3e-13 Score=136.72 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=108.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.++||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++|+...+. |++++++|+.+.. ++ ...+||.|++|
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~---l~-~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTD---MP-SEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccc---cc-cCCCccEEEEC
Confidence 4689999999999999999999999999999999999999999988775 8999999986531 11 24579999987
Q ss_pred CCCCCCCCcc-----------hhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 311 CPNPDFNRPE-----------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 311 fpdp~~k~~~-----------~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
.|+..... +...+ +..++++.+.+.|+|||.++++++. ++.+.+.+.+++.||..+.+
T Consensus 327 --PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 327 --PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred --CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCCCcEEEE
Confidence 34432211 11112 2357888899999999999999865 56788999999999887777
Q ss_pred ecc
Q 014708 372 VQD 374 (420)
Q Consensus 372 ~~D 374 (420)
.+|
T Consensus 404 ~kD 406 (423)
T PRK14966 404 LPD 406 (423)
T ss_pred EEc
Confidence 777
No 34
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.1e-13 Score=126.86 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=112.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+.+|+|.|.|||.++..||.. .|..+++.+|+.++.++.|++|+.+.++.| +.+..+|+.+.. .+..||.|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~------~~~~vDav 167 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI------DEEDVDAV 167 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc------cccccCEE
Confidence 4789999999999999999975 788999999999999999999999999987 999999998763 24489999
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
++..|||| ++++.+.+.|||||.+.+-+..-++.+...+.++++||...++
T Consensus 168 ~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 168 FLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred EEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 99999999 9999999999999999999988889999999999999876544
No 35
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.52 E-value=1.5e-13 Score=132.57 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHH---hCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQL---SGITNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~---~~l~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
++.+|||+|||+|.++..++++. |+.+++|+|+|++|++.|+++... ....|++++++|+.++ ++++++||
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-----p~~~~sfD 147 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-----PFDDCYFD 147 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-----CCCCCCEe
Confidence 36789999999999999999884 678999999999999999887542 2356899999999876 23578999
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.|++.+.-.+..+ + ..++++++++|||||+|++.
T Consensus 148 ~V~~~~~l~~~~d--~------~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 148 AITMGYGLRNVVD--R------LKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEEecccccCCC--H------HHHHHHHHHHcCcCcEEEEE
Confidence 9988654332211 1 37999999999999999885
No 36
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=2.2e-13 Score=130.94 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+.+|||||||+|.++..+++.+|+.+++|+|+|+.|++.|+++ ++.++++|+.++. ++++||.|++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~------~~~~fD~v~~ 95 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK------PKPDTDVVVS 95 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC------CCCCceEEEE
Confidence 46889999999999999999999999999999999999998652 5789999997651 3578999999
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
++.-.|..+ + ..+++++++.|||||++.+..
T Consensus 96 ~~~l~~~~d--~------~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 96 NAALQWVPE--H------ADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ehhhhhCCC--H------HHHHHHHHHhCCCCcEEEEEc
Confidence 865555322 1 378999999999999999874
No 37
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.51 E-value=3.6e-13 Score=127.23 Aligned_cols=135 Identities=16% Similarity=0.287 Sum_probs=109.6
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
..+|||+|||+|..++.+|++.++..++|+|+++.+.+.|+++.+.+++. +++++++|+.++... . ...+||.|++
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~-~--~~~~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA-L--VFASFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-c--cccccCEEEe
Confidence 68899999999999999999988899999999999999999999988875 699999999998532 2 2447999999
Q ss_pred eCCCCCCCCcch----hh--------hhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 310 QCPNPDFNRPEH----RW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 310 ~fpdp~~k~~~~----k~--------Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
| .|+++.... .. .+.-.++++...++|||||++.+..-.+. ..++.+.+.+++|....+
T Consensus 122 N--PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er-l~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 122 N--PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER-LAEIIELLKSYNLEPKRI 192 (248)
T ss_pred C--CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH-HHHHHHHHHhcCCCceEE
Confidence 8 666554322 11 12237999999999999999999885444 556888999988876544
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.51 E-value=5.9e-14 Score=112.61 Aligned_cols=95 Identities=16% Similarity=0.288 Sum_probs=75.3
Q ss_pred EEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCC
Q 014708 235 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 314 (420)
Q Consensus 235 LDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp 314 (420)
||+|||+|..+..++++ +..+++|+|+|+++++.++++.... ++.+.++|+.++ ++++++||.|++...-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l-----~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDL-----PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSS-----SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhC-----cccccccccccccccee
Confidence 89999999999999998 8999999999999999999987543 466999999887 33689999998874333
Q ss_pred CCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 315 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 315 ~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
|. . -...+++++.|+|||||+++|
T Consensus 72 ~~--~------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL--E------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GS--S------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ec--c------CHHHHHHHHHHHcCcCeEEeC
Confidence 22 1 114899999999999999986
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.50 E-value=3.3e-13 Score=114.10 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=86.5
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.++||+|||+|.++..+++++|+.+|+|+|+|+.+++.+++++...++.++.++..|+...++. ...++|.|++.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~v~~~ 95 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED----SLPEPDRVFIG 95 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh----hcCCCCEEEEC
Confidence 56899999999999999999999999999999999999999999888888999999998754221 24589999886
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.+... ..++++.+.+.|+|||+|++..
T Consensus 96 ~~~~~-----------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGGL-----------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccchh-----------HHHHHHHHHHHcCCCCEEEEEe
Confidence 42211 1389999999999999999853
No 40
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.49 E-value=6.5e-13 Score=127.43 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=101.2
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
..++||+|||+|.+++.+++..|..+++|+|+|+.+++.|++|+..++ ++++++|+.+.++... .+.||.|+++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~---~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTAL---RGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhc---CCCEeEEEEC
Confidence 358999999999999999999999999999999999999999997765 4789999876532211 3579999887
Q ss_pred CCCCCCCCc------------chhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 311 CPNPDFNRP------------EHRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 311 fpdp~~k~~------------~~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
.|+.... .++..+ +...+++.+.+.|+|||.+++.+... +...+.+.++++++....
T Consensus 161 --PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 161 --APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-QAPLAVEAFARAGLIARV 237 (251)
T ss_pred --CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc-hHHHHHHHHHHCCCCcee
Confidence 4443211 011111 23588899999999999999998764 467799999999987643
No 41
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.49 E-value=4.9e-13 Score=112.42 Aligned_cols=111 Identities=24% Similarity=0.330 Sum_probs=88.8
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|++++...++ .+++++++|+.+.. ..+ .+.++|.|+.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~--~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP-EPL--PDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH-HTC--TTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch-hhc--cCceeEEEEEC
Confidence 579999999999999999997 79999999999999999999999887 57999999998874 223 47899999998
Q ss_pred CCCCCCCCcc--hhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 311 CPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 311 fpdp~~k~~~--~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.||....+ ...+-....+++++.+.|+|||.+.+.+
T Consensus 78 --pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 --PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ---STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 55543211 1112244699999999999999999876
No 42
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.48 E-value=5.5e-13 Score=134.35 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=92.6
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC---CcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI---TNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l---~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
..+|||+|||+|.+++.+++++|+.+++++|+|+.+++.|+++++.++. .+++++..|+...+ .+.+||.|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~------~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV------EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC------CCCCEEEE
Confidence 3589999999999999999999999999999999999999999987764 37899999986531 35689999
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HHHHHHHHHH
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ 360 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~~~~~~~~~ 360 (420)
++| .|++...... .-+..++++.+.++|+|||.|++..+. ..|...+.+.
T Consensus 303 lsN--PPfh~~~~~~-~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~ 353 (378)
T PRK15001 303 LCN--PPFHQQHALT-DNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI 353 (378)
T ss_pred EEC--cCcccCccCC-HHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence 997 4443221111 112347899999999999999998642 4454444443
No 43
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.48 E-value=1.4e-12 Score=120.58 Aligned_cols=123 Identities=14% Similarity=0.209 Sum_probs=100.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+..+||+|||+|.+++.+|+. .|..+++++|+++.+++.|++++...+ ..|+.++++|+.+.++. .++.+|.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D~V 115 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFDRI 115 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCCEE
Confidence 4679999999999999999987 467899999999999999999999888 46899999999875432 24679999
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~ 367 (420)
++...... ...+++.+.+.|+|||++++.+-.......+.+.++++|+.
T Consensus 116 ~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 116 FIGGGSEK-----------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred EECCCccc-----------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 88532211 13789999999999999998655555667788889999974
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=99.47 E-value=3.9e-13 Score=134.60 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..|||||||+|.++..|++.+ +.+++|+|+|+.+++.|++++...++. +++|+++|+.++ ++++++||.|+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-----PFEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-----CCCCCCccEEE
Confidence 46789999999999999999987 789999999999999999999888874 799999999875 22578999998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+...-.+..+ ...+++++.++|||||.|++.+
T Consensus 192 s~~~~~h~~d--------~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPD--------KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence 8644333221 1379999999999999999864
No 45
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=1.2e-12 Score=129.22 Aligned_cols=126 Identities=11% Similarity=0.217 Sum_probs=99.0
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
..|||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++++..+++. ++.++++|+.+.+ ++.+||.|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l------~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL------PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC------CCCCccEEEEC
Confidence 5899999999999999999999999999999999999999999998875 5999999986542 24579999887
Q ss_pred CCCCCCCCcc-----------hhhh--------hhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014708 311 CPNPDFNRPE-----------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 311 fpdp~~k~~~-----------~k~R--------l~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~ 367 (420)
.|+..... +... -+...+++.+.+.|+|||.+++.+++.. +.+.+.+.++++.
T Consensus 209 --PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~--~~~~~~~~~~~~~ 280 (307)
T PRK11805 209 --PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR--VHLEEAYPDVPFT 280 (307)
T ss_pred --CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHhhCCCE
Confidence 34422111 1100 1235789999999999999999987642 3477777776643
No 46
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.46 E-value=1e-12 Score=125.04 Aligned_cols=105 Identities=14% Similarity=0.237 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~ 306 (420)
++.+|||||||+|.++..++++ +|+++++|+|+|+.|++.|++++...+. .+++++++|+.++. ...+|.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-------IKNASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-------CCCCCE
Confidence 4678999999999999999987 4899999999999999999999877654 47999999998761 234788
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
|++.+.-.|..... ...+++++++.|||||.|++.
T Consensus 126 v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 126 VILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEEe
Confidence 87776544422111 137999999999999999986
No 47
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=5.8e-13 Score=127.47 Aligned_cols=134 Identities=14% Similarity=0.220 Sum_probs=96.4
Q ss_pred eeeeeccccCCCccccccCCccccccccccCCCCCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHh
Q 014708 197 VWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSL 274 (420)
Q Consensus 197 ~le~l~g~~lPgv~aL~~~~p~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~ 274 (420)
.+..+..+..|+++.+..... .+...+.. ++.+|||||||+|..+..+++. +|+.+++|+|+|+.|++.|++++
T Consensus 27 ~yd~~~~~~~p~y~~~~~~~~---~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~ 102 (247)
T PRK15451 27 VFPDMIQRSVPGYSNIISMIG---MLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI 102 (247)
T ss_pred hhhhHHHhcCCChHHHHHHHH---HHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHH
Confidence 344555667888765443321 11122222 4678999999999999999884 68999999999999999999999
Q ss_pred HHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 275 QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 275 ~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
...+.. +++++++|+.++ +...+|.|++++.-.+.... -...+++++++.|||||.|++.
T Consensus 103 ~~~~~~~~v~~~~~d~~~~-------~~~~~D~vv~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 103 DAYKAPTPVDVIEGDIRDI-------AIENASMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred HhcCCCCCeEEEeCChhhC-------CCCCCCEEehhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 887765 799999999775 12347887765432221110 1247899999999999999885
No 48
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.46 E-value=1.3e-12 Score=137.12 Aligned_cols=136 Identities=15% Similarity=0.201 Sum_probs=107.9
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
...|||+|||+|.+++.+++.+|+.+++|+|+|+.+++.|++|+..+++. ++.++++|+.+.+ .+.+||.|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~------~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI------EKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC------cCCCccEEEE
Confidence 46899999999999999999999999999999999999999999888875 6999999986532 3567999998
Q ss_pred eCCCCCCCCc------------chhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014708 310 QCPNPDFNRP------------EHRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 310 ~fpdp~~k~~------------~~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~ 369 (420)
+ .|+.... ++...+ ....+++.+.+.|+|||.+++.+.. .+.+.+.+.+.+.+|...
T Consensus 213 N--PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 213 N--PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAVTQIFLDHGYNIE 289 (506)
T ss_pred C--CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHHHHHHHhcCCCce
Confidence 7 3332211 111111 2357888999999999999999854 457778889999998776
Q ss_pred Eeeccc
Q 014708 370 VLVQDE 375 (420)
Q Consensus 370 ~~~~D~ 375 (420)
.+.+|.
T Consensus 290 ~~~~D~ 295 (506)
T PRK01544 290 SVYKDL 295 (506)
T ss_pred EEEecC
Confidence 667773
No 49
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.45 E-value=1e-12 Score=130.12 Aligned_cols=155 Identities=16% Similarity=0.139 Sum_probs=103.6
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+.+|||||||+|.++..|++. +.+|+|||+|+++++.|++++...+. .++.++++|+.++ + ..+++||.|++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~----~~~~~FD~Vi~ 204 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-A----DEGRKFDAVLS 204 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-h----hccCCCCEEEE
Confidence 568999999999999999874 78999999999999999988765543 4899999999876 1 14678999987
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCCC
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN 389 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~~ 389 (420)
...-.+..+ + ..+++++.++|||||.+++.+-+.....+....... .+...++... .| .| .
T Consensus 205 ~~vLeHv~d--~------~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~-eyi~~~lp~g-----th--~~---~ 265 (322)
T PLN02396 205 LEVIEHVAN--P------AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGA-EYILRWLPKG-----TH--QW---S 265 (322)
T ss_pred hhHHHhcCC--H------HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhH-HHHHhcCCCC-----Cc--Cc---c
Confidence 532111111 1 389999999999999999987654432222211110 0000001000 11 12 1
Q ss_pred CCCCCCHHHHHHHHCCCCeEEE
Q 014708 390 SFGVRSDWEQHVIDRGAPMYRL 411 (420)
Q Consensus 390 ~~~~~T~~E~~~~~~G~~i~~~ 411 (420)
.+..+.++++.+.+.|..+...
T Consensus 266 ~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 266 SFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CCCCHHHHHHHHHHcCCeEEEE
Confidence 2344567788888899877553
No 50
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=2.6e-12 Score=124.44 Aligned_cols=136 Identities=15% Similarity=0.242 Sum_probs=104.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..|||+|||+|.+++.+++..|+.+++|+|+|+.+++.|++++......|+.++++|+...+ .+++||.|++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~------~~~~fD~Iv~ 181 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL------PGGRFDLIVS 181 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC------CCCceeEEEE
Confidence 3578999999999999999999999999999999999999999987334468999999985431 2468999988
Q ss_pred eCCCCCCCCcc------------hhhhh--------hHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014708 310 QCPNPDFNRPE------------HRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 310 ~fpdp~~k~~~------------~k~Rl--------~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~ 369 (420)
+ .|+..... +...+ ....+++.+.+.|+|||++++.+++ .+.+.+.+.+.+.|+..+
T Consensus 182 n--pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-~~~~~~~~~l~~~gf~~v 258 (275)
T PRK09328 182 N--PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-DQGEAVRALLAAAGFADV 258 (275)
T ss_pred C--CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-hHHHHHHHHHHhCCCcee
Confidence 7 33322111 11111 2257889999999999999999865 446678888988888755
Q ss_pred Eeecc
Q 014708 370 VLVQD 374 (420)
Q Consensus 370 ~~~~D 374 (420)
.+..|
T Consensus 259 ~~~~d 263 (275)
T PRK09328 259 ETRKD 263 (275)
T ss_pred EEecC
Confidence 55445
No 51
>PRK04266 fibrillarin; Provisional
Probab=99.45 E-value=1.8e-12 Score=122.37 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=98.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||+|||+|.++..+++..+...|+|+|+++.|++.+.+++.+. .|+.++.+|+.... ...+ .+.++|.|+.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~-~~~~-l~~~~D~i~~ 147 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPE-RYAH-VVEKVDVIYQ 147 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcc-hhhh-ccccCCEEEE
Confidence 467999999999999999999987779999999999999888877543 68999999987521 1111 1356999998
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-----eCc----HHHHHHHHHHHHHcCCceeEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-----td~----~~~~~~~~~~l~~~g~~~~~~ 371 (420)
..++||. ...+++.+.+.|||||.|++. .|+ ...++...+.+++.||.....
T Consensus 148 d~~~p~~----------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 148 DVAQPNQ----------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred CCCChhH----------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 7777761 125689999999999999994 333 233345668888999886543
No 52
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=125.31 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|||+|||+|.++..+++. ..+|+|+|+|+++++.|++++...++ .|++++++|+.++. .. .+++||.|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~---~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QH---LETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh-hh---cCCCCCEEE
Confidence 3578999999999999999987 57899999999999999999988886 47999999998862 21 367899998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
++..-.|..+ + ..+++++.++|||||++.+..
T Consensus 118 ~~~vl~~~~~--~------~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVAD--P------KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCC--H------HHHHHHHHHHcCCCeEEEEEE
Confidence 7643222111 1 378999999999999998754
No 53
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.44 E-value=1.2e-12 Score=122.24 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=109.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCC------CeEEEEeCChHHHHHHHHHhHHhCCC---cEEEEEcChhhhhhhhhccC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKD------LNFLGLEVNGKLVTHCRDSLQLSGIT---NGYFIATNATSTFRSIVASY 300 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~------~~viGiDis~~~i~~A~~~~~~~~l~---nv~~~~~Da~~~~~~~~~~~ 300 (420)
++..+||++||||.++..+.++.+. .+|+.+|+|++|+..+.+++.+.++. .+.++++||+++ |++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-----pFd 174 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-----PFD 174 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----CCC
Confidence 5689999999999999999998776 89999999999999999999887763 399999999987 347
Q ss_pred CCeEeEEEEeC-----CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce-eE----
Q 014708 301 PGKLILVSIQC-----PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK-LV---- 370 (420)
Q Consensus 301 ~~~~d~i~~~f-----pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~-~~---- 370 (420)
+.++|..++.| +|| ++.|++++|+|||||+|.+- +....-.+.+..|....++. +.
T Consensus 175 d~s~D~yTiafGIRN~th~-------------~k~l~EAYRVLKpGGrf~cL-eFskv~~~~l~~fy~~ysf~VlpvlG~ 240 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHI-------------QKALREAYRVLKPGGRFSCL-EFSKVENEPLKWFYDQYSFDVLPVLGE 240 (296)
T ss_pred CCcceeEEEecceecCCCH-------------HHHHHHHHHhcCCCcEEEEE-EccccccHHHHHHHHhhhhhhhchhhH
Confidence 89999998765 444 37899999999999998753 11111101222222222221 11
Q ss_pred -eeccccccccCCCCCCC--CCCCCCCCHHHHHHHHCCCCeEE
Q 014708 371 -LVQDECDTKTNQGGWLG--ENSFGVRSDWEQHVIDRGAPMYR 410 (420)
Q Consensus 371 -~~~D~~~~~~~~~~~~~--~~~~~~~T~~E~~~~~~G~~i~~ 410 (420)
+..| + .+.-++. .+.+....+|+.+-...|++.-.
T Consensus 241 ~iagd-~----~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 241 IIAGD-R----KSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhh-H----hhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 1111 0 0111221 24456677999999999987653
No 54
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=8.7e-13 Score=122.02 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||+|||+|.++..||++ ..+|+|+|+|+.+++.+++++...+++|+++.+.|+.++. .+.+||.|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT------FDGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC------cCCCcCEEEE
Confidence 3578999999999999999987 5799999999999999999998888889999999987641 2457999987
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
++.-.+... -..+.+++.+.++|+|||++++.
T Consensus 102 ~~~~~~~~~------~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEA------KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 743222110 01248999999999999996553
No 55
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=1.3e-12 Score=125.44 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||||||+|.++..+++.+|+.+++|+|+|+.+++.|+++. +|+.|+.+|+..+. ++.++|.|++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~------~~~~fD~v~~ 99 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ------PPQALDLIFA 99 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC------CCCCccEEEE
Confidence 467899999999999999999999999999999999999998763 57899999997652 3568999998
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
++.-.|.++. ..+++++.++|||||.|.+.+
T Consensus 100 ~~~l~~~~d~--------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 100 NASLQWLPDH--------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccChhhCCCH--------HHHHHHHHHhcCCCcEEEEEC
Confidence 8665554321 378999999999999999975
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=2.8e-13 Score=111.43 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=74.6
Q ss_pred EEEEcCCccHHHHHHHHhC---CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 234 VVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 234 vLDIGcG~G~~~~~lA~~~---P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
|||+|||+|..+..+++.+ |..+++|+|+|+.|++.++++....+. +++|+++|+.++ +. .++++|.|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l-~~----~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDL-PF----SDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCH-HH----HSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHC-cc----cCCCeeEEEEc
Confidence 7999999999999999986 668999999999999999999987666 899999999886 21 36799999985
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCe
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 342 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG 342 (420)
+.... +-.+-....+++++.++|+|||
T Consensus 75 ~~~~~-----~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLH-----HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGG-----GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccC-----CCCHHHHHHHHHHHHHHhCCCC
Confidence 33111 1111122589999999999998
No 57
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.43 E-value=3e-12 Score=121.87 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=106.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhh-hhhhhhccCCCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-TFRSIVASYPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~-~~~~~~~~~~~~~d~ 306 (420)
++.+|||.|+|+|.++..||+. .|..+|+.+|++++.++.|+++++.+++. |+++.+.|+.. .+..- .+..+|.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~---~~~~~Da 116 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE---LESDFDA 116 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TTSEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---ccCcccE
Confidence 4899999999999999999987 79999999999999999999999999986 89999999964 22111 2467999
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhc-cCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL-VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~L-kpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
|++..|+|| ..+..+.+.| ||||++++-+.+-.+.....+.|+++||..+.+
T Consensus 117 vfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 117 VFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp EEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence 999999999 8899999999 999999999999999999999999999866543
No 58
>PRK14968 putative methyltransferase; Provisional
Probab=99.41 E-value=5.9e-12 Score=114.58 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=99.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc--EEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n--v~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
++..+||+|||+|.++..+++. ..+++|+|+|+.+++.+++++...++++ +.++++|+.+.+ .+.++|.|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~d~v 94 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF------RGDKFDVI 94 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc------cccCceEE
Confidence 4678999999999999999988 6899999999999999999998888766 899999986532 24589999
Q ss_pred EEeCCCCCCCCc-------------c--hhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 308 SIQCPNPDFNRP-------------E--HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 308 ~~~fpdp~~k~~-------------~--~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
+.+.| +.... + ...+.....+++++.++|||||.+++........+.+.+.+.+.|+.....
T Consensus 95 i~n~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 95 LFNPP--YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred EECCC--cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence 87633 21100 0 000112357899999999999998886543333456888899999876543
No 59
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.41 E-value=1.2e-12 Score=121.91 Aligned_cols=112 Identities=19% Similarity=0.281 Sum_probs=93.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+.+|||||||-|.++..||+. +.+|+|+|+|+++|+.|+..+.+.++. +.+.+..++++.. ..++||.|.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~-----~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLAS-----AGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHh-----cCCCccEEEE
Confidence 4788999999999999999999 599999999999999999999888874 7788888888742 2479999976
Q ss_pred -----eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHH
Q 014708 310 -----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL 362 (420)
Q Consensus 310 -----~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~ 362 (420)
+.|||- .|++.+.+.+||||.+++.|-+.....++...+.
T Consensus 131 mEVlEHv~dp~-------------~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ 175 (243)
T COG2227 131 MEVLEHVPDPE-------------SFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG 175 (243)
T ss_pred hhHHHccCCHH-------------HHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH
Confidence 357773 7999999999999999999977665555554443
No 60
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.40 E-value=1.6e-11 Score=118.98 Aligned_cols=105 Identities=16% Similarity=0.240 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|||||||+|..+..+++. .+..+++|+|+++.+++.|+++....++.|++|+++|+.++ +.++++||.|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-----~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-----PVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-----CCCCCceeEEE
Confidence 4789999999999998887776 46678999999999999999999888888999999998765 22467899998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.+..-.+... .+.+++++.++|||||+|++.
T Consensus 152 ~~~v~~~~~d--------~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 152 SNCVINLSPD--------KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EcCcccCCCC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 7642222111 137899999999999999984
No 61
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.1e-12 Score=123.34 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=98.4
Q ss_pred cCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 226 f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
++......|||+|||.|-+++.+|+.+|+..++.+|++..+++.|++|+..++++|..++..|..+- -.++||
T Consensus 154 l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-------v~~kfd 226 (300)
T COG2813 154 LPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-------VEGKFD 226 (300)
T ss_pred CCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------cccccc
Confidence 3333345899999999999999999999999999999999999999999999999876777777553 234899
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-cHHHHHHHHHHHH
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFL 362 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-~~~~~~~~~~~l~ 362 (420)
.|++| .|.+....--.+ +..++++...+.|++||.|++... ..+|...|.+.|.
T Consensus 227 ~IisN--PPfh~G~~v~~~-~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 227 LIISN--PPFHAGKAVVHS-LAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred EEEeC--CCccCCcchhHH-HHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 99997 565433322222 234899999999999999999875 3555555555544
No 62
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.39 E-value=9e-14 Score=113.73 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=65.6
Q ss_pred EEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCC
Q 014708 235 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 314 (420)
Q Consensus 235 LDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp 314 (420)
||||||+|.++..+++++|..+++|+|+|+.|++.|+++.......+...+..+..+..... ..++||.|++...-.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD---PPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC---C----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc---cccccceehhhhhHh
Confidence 79999999999999999999999999999999999999988877666666666555542111 235999999886555
Q ss_pred CCCCcchhhhhhHHHHHHHHHhhccCCeEE
Q 014708 315 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 344 (420)
Q Consensus 315 ~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l 344 (420)
|. .+. ..+++.+++.|||||.|
T Consensus 78 ~l--~~~------~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HL--EDI------EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-H------HHHHHHHTTT-TSS-EE
T ss_pred hh--hhH------HHHHHHHHHHcCCCCCC
Confidence 54 111 38999999999999986
No 63
>PRK14967 putative methyltransferase; Provisional
Probab=99.38 E-value=1.1e-11 Score=116.86 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=95.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++...+. ++.++++|+.+. + .+.+||.|++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~--~~~~fD~Vi~ 107 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V--EFRPFDVVVS 107 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c--cCCCeeEEEE
Confidence 3578999999999999999986 345899999999999999999988776 689999998654 2 3578999998
Q ss_pred eCCCCCCCCcc-------h--------hhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014708 310 QCPNPDFNRPE-------H--------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 310 ~fpdp~~k~~~-------~--------k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~ 368 (420)
+- |+..... + ........+++++.+.|||||++++.+..........+.+++.++..
T Consensus 108 np--Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 108 NP--PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred CC--CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 72 3322111 0 01112357889999999999999986433323456777888888764
No 64
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.38 E-value=3.3e-12 Score=119.68 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||||||+|.++..||+..+ +.+|+|+|+++.+++.|++++.+.+++|++++++|+.+.+. ....||.|+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Ii 151 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-----PLAPYDRIY 151 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-----ccCCCCEEE
Confidence 468999999999999999999854 57899999999999999999999999999999999976521 245899998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+..+.+ .+...+.+.|+|||++++..
T Consensus 152 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 152 VTAAGP--------------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EcCCcc--------------cccHHHHHhcCcCcEEEEEE
Confidence 874432 34456788999999999865
No 65
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.37 E-value=2.1e-12 Score=117.85 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=103.4
Q ss_pred eeeeeccccCCCccccccCCccccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH
Q 014708 197 VWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL 276 (420)
Q Consensus 197 ~le~l~g~~lPgv~aL~~~~p~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~ 276 (420)
+++|-..++.|..+-|.. .|. .....|+|+|||+|+.+..|++++|+..++|+|-|++|++.|+++
T Consensus 8 Yl~F~~eRtRPa~dLla~-Vp~----------~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--- 73 (257)
T COG4106 8 YLQFEDERTRPARDLLAR-VPL----------ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--- 73 (257)
T ss_pred HHHHHHhccCcHHHHHhh-CCc----------cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh---
Confidence 344445566666544432 221 135679999999999999999999999999999999999999665
Q ss_pred hCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-Cc--HHH
Q 014708 277 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DI--EEV 353 (420)
Q Consensus 277 ~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~--~~~ 353 (420)
+.|++|.++|+.++- ++.+.|.++.|-.-.|..+ | +++|.++...|.|||.+.++. || +..
T Consensus 74 --lp~~~f~~aDl~~w~------p~~~~dllfaNAvlqWlpd-H-------~~ll~rL~~~L~Pgg~LAVQmPdN~deps 137 (257)
T COG4106 74 --LPDATFEEADLRTWK------PEQPTDLLFANAVLQWLPD-H-------PELLPRLVSQLAPGGVLAVQMPDNLDEPS 137 (257)
T ss_pred --CCCCceecccHhhcC------CCCccchhhhhhhhhhccc-c-------HHHHHHHHHhhCCCceEEEECCCccCchh
Confidence 578999999998872 5778899987754444221 2 488999999999999999986 22 233
Q ss_pred HHHHHHHHHHcCC
Q 014708 354 MLRMKQQFLEYGK 366 (420)
Q Consensus 354 ~~~~~~~l~~~g~ 366 (420)
...|.+..++.+|
T Consensus 138 H~~mr~~A~~~p~ 150 (257)
T COG4106 138 HRLMRETADEAPF 150 (257)
T ss_pred HHHHHHHHhcCch
Confidence 4456666665544
No 66
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.37 E-value=4.4e-12 Score=112.80 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=95.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhc------cCCC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVA------SYPG 302 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~------~~~~ 302 (420)
+.++|||+|||+|.++..|++.--....+|+|.|+++++.|+..+++.+.+| ++|.+.|+.+- .+++ ...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFLSGQFDLVLDKG 144 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cccccceeEEeecC
Confidence 4569999999999999999998434569999999999999999999999998 99999999873 2210 0124
Q ss_pred eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014708 303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~ 368 (420)
.+|.|.+ .||-. ..|+ .-++..+.+.|+|||.|++.+.+ ...+++.+.+++.++..
T Consensus 145 T~DAisL-s~d~~------~~r~--~~Y~d~v~~ll~~~gifvItSCN-~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 145 TLDAISL-SPDGP------VGRL--VVYLDSVEKLLSPGGIFVITSCN-FTKDELVEEFENFNFEY 200 (227)
T ss_pred ceeeeec-CCCCc------ccce--eeehhhHhhccCCCcEEEEEecC-ccHHHHHHHHhcCCeEE
Confidence 4455544 34432 1121 25778889999999999997644 44678899999888653
No 67
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.37 E-value=3.8e-12 Score=123.52 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCC---CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKD---LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~---~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~ 306 (420)
...+|||+|||+|.++..+++..|. ..++|+|+|+.+++.|+++ .+|+.+.++|+.++ ++.+++||.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~l-----p~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRL-----PFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccC-----CCcCCceeE
Confidence 3567999999999999999988774 3799999999999999765 35789999998775 235789999
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHH
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 361 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l 361 (420)
|+..+. | ..++++.++|||||+|++.+....+..++.+.+
T Consensus 155 I~~~~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 155 IIRIYA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred EEEecC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 987653 2 345788999999999999886665555555444
No 68
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.36 E-value=1.2e-11 Score=119.46 Aligned_cols=104 Identities=16% Similarity=0.126 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||||||+|..+..+++.+ ..+|+|+|+|+.+++.|++++.. ..++.|.++|+... +.++++||.|++
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~-----~~~~~~FD~V~s 123 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK-----DFPENTFDMIYS 123 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC-----CCCCCCeEEEEE
Confidence 46789999999999999998875 67999999999999999988653 35799999999754 224789999987
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
...-.+.... -...++++++++|||||+|++.
T Consensus 124 ~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 124 RDAILHLSYA------DKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred hhhHHhCCHH------HHHHHHHHHHHHcCCCcEEEEE
Confidence 5211111000 1147999999999999999984
No 69
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=6.5e-12 Score=116.03 Aligned_cols=102 Identities=9% Similarity=-0.003 Sum_probs=79.2
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.+|||+|||+|.++..+|++ ..+|+|+|+|+.+++.+++++...+++ +++.+.|+... + .+.++|.|+++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~-~-----~~~~fD~I~~~ 101 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAA-A-----LNEDYDFIFST 101 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhc-c-----ccCCCCEEEEe
Confidence 468999999999999999986 579999999999999999998887774 78888887543 1 24579999876
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
++-.+... -..+.+++.+++.|||||++++.
T Consensus 102 ~~~~~~~~------~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 102 VVFMFLQA------GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cccccCCH------HHHHHHHHHHHHHhCCCcEEEEE
Confidence 43222111 01247999999999999996654
No 70
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.35 E-value=5.4e-12 Score=122.35 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=79.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||||||.|.++..+|+++ +++|+|+.+|++..+.+++++.+.|+.+ +++.+.|..++ +.+||.|+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--------~~~fD~Iv 132 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--------PGKFDRIV 132 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--------CCCCCEEE
Confidence 58899999999999999999998 8999999999999999999999999874 99999998775 34899987
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
..-.-.+... --.+.|++.+.++|||||.+++.+
T Consensus 133 Si~~~Ehvg~------~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 133 SIEMFEHVGR------KNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EESEGGGTCG------GGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEechhhcCh------hHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7632222111 112589999999999999999864
No 71
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=8.1e-12 Score=124.89 Aligned_cols=119 Identities=17% Similarity=0.264 Sum_probs=90.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
..+|||+|||+|.++..+++++|+..++++|+|+.+++.|++++..+++. .+++..|+... .++.||.|+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-------~~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-------IKGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-------cCCCccEEEEC
Confidence 45799999999999999999999999999999999999999999988874 57778887542 25689999997
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HHHHHHHHHH
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ 360 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~~~~~~~~~ 360 (420)
. |.+........ ...++++.+.+.|||||.|++.... .+|...+.+.
T Consensus 269 P--PFH~g~~~~~~-~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~ 316 (342)
T PRK09489 269 P--PFHDGIQTSLD-AAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDET 316 (342)
T ss_pred C--CccCCccccHH-HHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHH
Confidence 3 44322111111 2258999999999999999987643 4454444333
No 72
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.35 E-value=7e-12 Score=120.05 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=80.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+...|||+|||+|.++..+++. ..+++|+|+|+.+++.|+++.. +..++++|+..+ +.++++||.|+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~-----~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL-----PLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC-----cCCCCcEEEEEE
Confidence 3578999999999999998875 5799999999999999988642 346889999775 225778999998
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+++-.|..+. ..++.++.++|+|||.+++.+
T Consensus 110 ~~~l~~~~d~--------~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGNL--------STALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CchhhhcCCH--------HHHHHHHHHHcCCCeEEEEEe
Confidence 7655553321 378999999999999999986
No 73
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.34 E-value=1.5e-11 Score=122.32 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=94.4
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.+|||||||+|.++..+++..|..+++|+|+|+.+++.|+++.. ..|++++++|+.++ +.++++||.|+++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l-----p~~~~sFDvVIs~ 185 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL-----PFPTDYADRYVSA 185 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC-----CCCCCceeEEEEc
Confidence 578999999999999999998888999999999999999998754 35789999999875 2246789999875
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HH---------------HHHHHHHHHHHcCCceeEe
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EE---------------VMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~---------------~~~~~~~~l~~~g~~~~~~ 371 (420)
..-.+..+ . ...++++.++|||||++++.... +. ..+++.+.+++.||..+.+
T Consensus 186 ~~L~~~~d--~------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 186 GSIEYWPD--P------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred ChhhhCCC--H------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 32222111 1 26899999999999999875321 10 1255667778888876543
No 74
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=7.6e-12 Score=120.35 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.++.++||||||.|..++.+|+++ +.+|+|+++|+++.+.+++++.+.|++ |+++.-.|..++ .+.||.|
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--------~e~fDrI 141 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--------EEPFDRI 141 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------cccccee
Confidence 368999999999999999999999 999999999999999999999999998 899999999876 3349998
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
...-.=-++... -.+.|++.+.+.|+|||.+.+.+
T Consensus 142 vSvgmfEhvg~~------~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 142 VSVGMFEHVGKE------NYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eehhhHHHhCcc------cHHHHHHHHHhhcCCCceEEEEE
Confidence 654211111111 12589999999999999999875
No 75
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=1.1e-11 Score=116.65 Aligned_cols=101 Identities=16% Similarity=0.278 Sum_probs=84.3
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.+|||+|||+|.++..+++..|..+++|+|+++.++..++++.. +|+.++++|+.+. +.+++++|.|+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~-----~~~~~~fD~vi~~ 105 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKL-----PLEDSSFDLIVSN 105 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhC-----CCCCCceeEEEEh
Confidence 468999999999999999999999999999999999999988754 4789999999875 1246789999987
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+.-.|..+. ..+++.+.+.|+|||.+++.+
T Consensus 106 ~~l~~~~~~--------~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 106 LALQWCDDL--------SQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhccCH--------HHHHHHHHHHcCCCcEEEEEe
Confidence 654443221 378999999999999999875
No 76
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.33 E-value=1.5e-11 Score=115.56 Aligned_cols=124 Identities=16% Similarity=0.198 Sum_probs=94.7
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
+|||||||+|.++..+++.+|+.+++|+|+|+.+++.|++++...++. +++++..|+... + .+++||.|+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-----~~~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-----FPDTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-----CCCCCCEeehHH
Confidence 599999999999999999999999999999999999999999887775 699999998654 1 245799997642
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcH------------H---HHHHHHHHHHHcCCceeE
Q 014708 312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE------------E---VMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~------------~---~~~~~~~~l~~~g~~~~~ 370 (420)
.-.+..+ .+.+++.+.++|||||++++..-.. . ...+..+.+.+.|+....
T Consensus 76 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 76 VIHHIKD--------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred HHHhCCC--------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 2111111 1489999999999999999853100 0 123466778888887654
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=1.7e-11 Score=114.17 Aligned_cols=100 Identities=10% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
++.+|||||||+|..+..+++..+ ..+++|+|+++++++.|++++.+.++. |++++++|+.+.++ ...+||.|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-----KHAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-----cCCCccEE
Confidence 357899999999999999998853 679999999999999999999888876 59999999976531 24689999
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
++...-+ .+.+++.+.|+|||+|++..
T Consensus 147 i~~~~~~--------------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAAS--------------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcc--------------hhhHHHHHhcCcCcEEEEEE
Confidence 9875433 23356788999999998854
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.31 E-value=2.9e-11 Score=126.42 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+.+|||||||+|.++..+++.+ +.+++|+|+|+.+++.|++++...+ .++.|.++|+.... + ++++||.|++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~---~--~~~~fD~I~s 338 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT---Y--PDNSFDVIYS 338 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC---C--CCCCEEEEEE
Confidence 46789999999999999999876 7799999999999999998875322 37999999987651 2 4678999987
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
...-.|..+ ...++++++++|||||.|++..
T Consensus 339 ~~~l~h~~d--------~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 339 RDTILHIQD--------KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCcccccCC--------HHHHHHHHHHHcCCCeEEEEEE
Confidence 533222211 1379999999999999999863
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=1.5e-11 Score=115.16 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|||||||+|.++..+++.. ++.+++|+|+++++++.|++++.+.+..|++++++|+...+ . ....||.|+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~---~--~~~~fD~I~ 150 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY---E--ENAPYDRIY 150 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC---C--cCCCcCEEE
Confidence 46789999999999999999884 56799999999999999999999999999999999997652 1 357899998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+...-+ .+...+.+.|||||++++..
T Consensus 151 ~~~~~~--------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 151 VTAAGP--------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ECCCcc--------------cchHHHHHhhCCCcEEEEEE
Confidence 864322 23345677899999998864
No 80
>PRK06922 hypothetical protein; Provisional
Probab=99.30 E-value=1.5e-11 Score=129.74 Aligned_cols=113 Identities=14% Similarity=0.232 Sum_probs=86.5
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.+|||||||+|.++..+++.+|+.+++|+|+|+.|++.|++++...+ .++.++++|+.++ +..+ +++++|.|+++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dL-p~~f--edeSFDvVVsn 494 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINL-SSSF--EKESVDTIVYS 494 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhC-cccc--CCCCEEEEEEc
Confidence 578999999999999999999999999999999999999998876554 4789999999875 3334 57899999876
Q ss_pred CCCCCCC-----CcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 311 CPNPDFN-----RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 311 fpdp~~k-----~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
++-.|.. ....-..-....++++++++|||||.+++.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4322110 000000011248999999999999999986
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.30 E-value=4.6e-11 Score=114.57 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|||+|||+|..++.+++..+ ..++|+|+|+.+++.|++++..+++. ++.+..+ +.+||.|+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------~~~fD~Vv 184 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------DLKADVIV 184 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-------------CCCcCEEE
Confidence 468899999999999988776543 46999999999999999999887763 3332222 22689998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
++.... ....++.++.++|||||++++..-.....+.+.+.+.++|+.....
T Consensus 185 ani~~~-----------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 185 ANILAN-----------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred EcCcHH-----------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 763211 1247889999999999999997544555677888899999876544
No 82
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.29 E-value=7.6e-11 Score=115.45 Aligned_cols=122 Identities=15% Similarity=0.215 Sum_probs=93.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++++..+++.+ +.+...|.... .+++||.|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-------~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-------IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-------cCCCceEEE
Confidence 4689999999999999888865 45689999999999999999999888764 66776663222 356899999
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
++..-. ....++..+.+.|||||+|++..-......++.+.++++ |....+
T Consensus 231 an~~~~-----------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 231 ANILAE-----------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred EecCHH-----------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 874211 113788999999999999998654555667778888776 665443
No 83
>PRK00811 spermidine synthase; Provisional
Probab=99.28 E-value=6.3e-11 Score=115.70 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=99.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-----CCcEEEEEcChhhhhhhhhccCCCeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-----l~nv~~~~~Da~~~~~~~~~~~~~~~ 304 (420)
++..||+||||+|..+..+++..+..+++++|+++.+++.|++.....+ -++++++.+|+..++.. .+++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE----TENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----CCCcc
Confidence 4678999999999999999976556799999999999999999876432 35799999999987532 36789
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 364 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~ 364 (420)
|.|++..+||+.. ...+...+|++.+.+.|+|||.+++.+.. ......+.+.+++.
T Consensus 152 DvIi~D~~dp~~~----~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~ 211 (283)
T PRK00811 152 DVIIVDSTDPVGP----AEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV 211 (283)
T ss_pred cEEEECCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 9999988888722 22456679999999999999999997643 23344455555554
No 84
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.28 E-value=2.9e-11 Score=120.54 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=97.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++..+||.|||+|.+++.++.. ..+++|+|+++.|+..|++|+...++.++.++++|+.++ +..++++|.|++
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l-----~~~~~~~D~Iv~ 254 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL-----PLSSESVDAIAT 254 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC-----CcccCCCCEEEE
Confidence 4678999999999999987764 679999999999999999999999998899999999875 213678999988
Q ss_pred eCCCCCCCCc---chhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014708 310 QCPNPDFNRP---EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 310 ~fpdp~~k~~---~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~ 369 (420)
+ .|+-... .+...-+..++++.+.+.|||||++++.+.... .+.+.++++|| ..
T Consensus 255 d--PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 255 D--PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR-VV 311 (329)
T ss_pred C--CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc-ch
Confidence 7 3332211 111112346899999999999999988764432 24456778887 54
No 85
>PRK04457 spermidine synthase; Provisional
Probab=99.28 E-value=7.1e-11 Score=114.07 Aligned_cols=126 Identities=11% Similarity=0.113 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|||||||+|.++..+++.+|+.+++++|+++.+++.|+++....+ .++++++++|+.+++.. .+.++|.|+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I~ 141 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVIL 141 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEEE
Confidence 4578999999999999999999999999999999999999999876544 36899999999887542 246799998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHHHH
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLE 363 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l~~ 363 (420)
+...++. . ....+...+|++.+.+.|+|||.+.+.. ..........+.+++
T Consensus 142 ~D~~~~~---~-~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~ 193 (262)
T PRK04457 142 VDGFDGE---G-IIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLES 193 (262)
T ss_pred EeCCCCC---C-CccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHH
Confidence 7532211 1 1112345699999999999999999842 222233344455544
No 86
>PLN02672 methionine S-methyltransferase
Probab=99.28 E-value=7e-11 Score=131.77 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=102.7
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC----------------CcEEEEEcChhhhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI----------------TNGYFIATNATSTFR 294 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l----------------~nv~~~~~Da~~~~~ 294 (420)
+.+|||+|||+|.+++.+++.+|..+++|+|+|+.+++.|++|+..+++ .+++|+++|+.+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 3589999999999999999999999999999999999999999987543 369999999976531
Q ss_pred hhhccCCCeEeEEEEeCCCCCCCCcc------------h---------hhhh-----------hHHHHHHHHHhhccCCe
Q 014708 295 SIVASYPGKLILVSIQCPNPDFNRPE------------H---------RWRM-----------VQRSLVEAVSDLLVHDG 342 (420)
Q Consensus 295 ~~~~~~~~~~d~i~~~fpdp~~k~~~------------~---------k~Rl-----------~~~~~l~~i~~~LkpgG 342 (420)
. ....||.|..| .|+..... + .-.+ +.++++.++.++|+|||
T Consensus 199 ~----~~~~fDlIVSN--PPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG 272 (1082)
T PLN02672 199 D----NNIELDRIVGC--IPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG 272 (1082)
T ss_pred c----cCCceEEEEEC--CCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence 0 12369999887 33322110 0 0111 22688899999999999
Q ss_pred EEEEEeCcHHHHHHHH-HHHHHcCCceeEe
Q 014708 343 KVFLQSDIEEVMLRMK-QQFLEYGKGKLVL 371 (420)
Q Consensus 343 ~l~~~td~~~~~~~~~-~~l~~~g~~~~~~ 371 (420)
.++++++. .+.+.+. +.+++.||....+
T Consensus 273 ~l~lEiG~-~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 273 IMIFNMGG-RPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred EEEEEECc-cHHHHHHHHHHHHCCCCeeEE
Confidence 99999964 5577788 6999999876443
No 87
>PLN03075 nicotianamine synthase; Provisional
Probab=99.28 E-value=3.7e-11 Score=116.85 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCccHHH--HHHHHhCCCCeEEEEeCChHHHHHHHHHhHH-hCCCc-EEEEEcChhhhhhhhhccCCCeEe
Q 014708 230 AQPLVVDIGSGNGLFL--LGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-SGITN-GYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~--~~lA~~~P~~~viGiDis~~~i~~A~~~~~~-~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
.+.+|+|||||.|.++ +.+++.+|+..|+|+|+++++++.|++.+.+ .++.+ ++|.++|+.+... ....||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-----~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-----SLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----ccCCcC
Confidence 4688999999988553 3345568999999999999999999999965 67764 9999999987521 136799
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.|++..--.|-+. . ..++++.+++.|+|||.+++.+
T Consensus 198 lVF~~ALi~~dk~-~------k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLAALVGMDKE-E------KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEecccccccc-c------HHHHHHHHHHhcCCCcEEEEec
Confidence 9988632222111 1 1489999999999999999987
No 88
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.26 E-value=3.3e-11 Score=117.93 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=81.2
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.+|||+|||+|..+..+|+. ..+|+|+|+|+.+++.+++++...++ ++++.+.|+.... .+++||.|++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~------~~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS------IQEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc------ccCCccEEEEc
Confidence 458999999999999999986 68999999999999999999988888 8999999986541 26789999876
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+.-.+... -..+.+++.+.+.|+|||++++.
T Consensus 192 ~vl~~l~~------~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 192 VVLMFLNR------ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred chhhhCCH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 42221110 01248999999999999996654
No 89
>PRK01581 speE spermidine synthase; Validated
Probab=99.26 E-value=1.3e-10 Score=115.60 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=101.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHH-----hHHh--CCCcEEEEEcChhhhhhhhhccCCC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS-----LQLS--GITNGYFIATNATSTFRSIVASYPG 302 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~-----~~~~--~l~nv~~~~~Da~~~~~~~~~~~~~ 302 (420)
++.+||+||||.|..+..+.+..+..+++++|+++.+++.|++. ..+. .-++++++.+|+.+++.. .++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~~~ 225 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----PSS 225 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----cCC
Confidence 56799999999999988888765668999999999999999962 1111 235799999999987542 356
Q ss_pred eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHH----HHHHHHHHHcCCce
Q 014708 303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM----LRMKQQFLEYGKGK 368 (420)
Q Consensus 303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~----~~~~~~l~~~g~~~ 368 (420)
.||.|++.+|||... ...++...+|++.+.+.|+|||.|+..+..+.+. ..+.+.+++.++..
T Consensus 226 ~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 226 LYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred CccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 899999999888622 2346777899999999999999999987654433 33566677766543
No 90
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.25 E-value=2.1e-10 Score=113.30 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||||||+|.++..++...+. .|+|+|.|+.|+..++......+ ..++.+...++.++ + ...+||.|+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p-----~~~~FD~V~ 193 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-H-----ELYAFDTVF 193 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-C-----CCCCcCEEE
Confidence 4689999999999999999988653 79999999999977544322222 34688888988776 1 235799998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+...-.|.. .+ ..+|++++++|||||.|++.+
T Consensus 194 s~gvL~H~~--dp------~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 194 SMGVLYHRK--SP------LEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EcchhhccC--CH------HHHHHHHHHhcCCCCEEEEEE
Confidence 763222111 11 279999999999999999864
No 91
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.23 E-value=2.4e-10 Score=112.72 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..++||||||+|.+++.+++++|+.+++++|. +.+++.+++++.+.++. +++++.+|+.+. + + + ..|.++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~--~---~-~~D~v~ 220 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--Y---P-EADAVL 220 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-C--C---C-CCCEEE
Confidence 357999999999999999999999999999997 78999999999988875 699999998753 1 2 2 248776
Q ss_pred EeCCC-CCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpd-p~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+...- -|.. -....+++++++.|+|||++++.
T Consensus 221 ~~~~lh~~~~-------~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 221 FCRILYSANE-------QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred eEhhhhcCCh-------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 54211 1110 01137899999999999999875
No 92
>PRK08317 hypothetical protein; Provisional
Probab=99.23 E-value=1.1e-10 Score=109.73 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..|||+|||+|.++..+++.+ |..+++|+|+|+.+++.|+++.. ....|+.+.+.|+... +..++.||.|+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~-----~~~~~~~D~v~ 92 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGL-----PFPDGSFDAVR 92 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccC-----CCCCCCceEEE
Confidence 46789999999999999999987 78999999999999999988732 3346899999998764 12467899998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+...-.+..+ + ..+++++.++|||||.+++.
T Consensus 93 ~~~~~~~~~~--~------~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 93 SDRVLQHLED--P------ARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred EechhhccCC--H------HHHHHHHHHHhcCCcEEEEE
Confidence 7632222111 1 37899999999999999875
No 93
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.23 E-value=6.2e-10 Score=113.41 Aligned_cols=135 Identities=12% Similarity=0.141 Sum_probs=97.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+.+|||+|||+|.+++.++.. ....++++|+|+.+++.|++|+..+++. +++++++|+.+.+..+.. ...+||.|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCCEE
Confidence 3678999999999999876653 4569999999999999999999999884 799999999987644321 24579999
Q ss_pred EEeCCCCCCCCcchh-hhh--hHHHHHHHHHhhccCCeEEEEEeCc-----HHHHHHHHHHHHHcCCce
Q 014708 308 SIQCPNPDFNRPEHR-WRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k-~Rl--~~~~~l~~i~~~LkpgG~l~~~td~-----~~~~~~~~~~l~~~g~~~ 368 (420)
+++ .|.+...... ... -..+++..+.++|+|||.|+..|.. +.+.+.+.+.....+...
T Consensus 298 ilD--PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~ 364 (396)
T PRK15128 298 VMD--PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV 364 (396)
T ss_pred EEC--CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence 886 3333222111 011 1356778899999999999986642 444444555555655444
No 94
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=2.2e-10 Score=118.42 Aligned_cols=135 Identities=15% Similarity=0.259 Sum_probs=97.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||+|||+|..+..+++.. +...++++|+++.+++.+++++.+.|+.|+.++++|+..+. ...+..+++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~-~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL-ELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc-cccccccccCCEEE
Confidence 46899999999999999999884 45799999999999999999999999999999999998762 11101256899998
Q ss_pred EeCC----CCCCCCcchhhh--------h--hHHHHHHHHHhhccCCeEEEEEeCc---HHHHHHHHHHHHHcC
Q 014708 309 IQCP----NPDFNRPEHRWR--------M--VQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG 365 (420)
Q Consensus 309 ~~fp----dp~~k~~~~k~R--------l--~~~~~l~~i~~~LkpgG~l~~~td~---~~~~~~~~~~l~~~g 365 (420)
+.-| .-+.+....+.+ + ++.++|+.+.+.|||||+++..|-. ++-.+.+...+++++
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 8632 011111111111 1 2578999999999999999887632 122223445556664
No 95
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.1e-10 Score=113.16 Aligned_cols=133 Identities=14% Similarity=0.217 Sum_probs=100.9
Q ss_pred ccccccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhh
Q 014708 219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIV 297 (420)
Q Consensus 219 ~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~ 297 (420)
.+.|.+.+.. ++..+||+|||||-+++..++.. ...++|+|++|-+++.|++|+..+++.. ++.-..+.... .
T Consensus 152 cL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~----~ 225 (300)
T COG2264 152 CLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV----P 225 (300)
T ss_pred HHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh----c
Confidence 4456555554 57899999999999999999874 4579999999999999999999998875 22323333222 1
Q ss_pred ccCCCeEeEEEEeC-CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 298 ASYPGKLILVSIQC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 298 ~~~~~~~d~i~~~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
....+|.|..|- .+|. ..+..++.+.|||||++++.==-.++.+.+.+.+.+.||....+
T Consensus 226 --~~~~~DvIVANILA~vl------------~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 226 --ENGPFDVIVANILAEVL------------VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred --ccCcccEEEehhhHHHH------------HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 235899998872 2221 37889999999999999997545677888888999999987654
No 96
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=2.1e-10 Score=119.03 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=95.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|||+|||+|..+..+++.. |+..++++|+++.+++.+++++++.|+.|+.++++|+..+. ..+ .++||.|+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~---~~~fD~Vl 325 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-EKF---AEKFDKIL 325 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-chh---cccCCEEE
Confidence 46789999999999999999885 77899999999999999999999999999999999998752 112 36799998
Q ss_pred EeCCCCCCCC----cchh-------h---hh--hHHHHHHHHHhhccCCeEEEEEeCc--H-HHHHHHHHHHHHcC
Q 014708 309 IQCPNPDFNR----PEHR-------W---RM--VQRSLVEAVSDLLVHDGKVFLQSDI--E-EVMLRMKQQFLEYG 365 (420)
Q Consensus 309 ~~fpdp~~k~----~~~k-------~---Rl--~~~~~l~~i~~~LkpgG~l~~~td~--~-~~~~~~~~~l~~~g 365 (420)
+.-| +.-. +++. . ++ ++.++|+.+.+.|||||+++..|-. . .....+...+++++
T Consensus 326 ~D~P--csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 326 VDAP--CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP 399 (444)
T ss_pred EcCC--CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence 8633 1100 0110 1 11 3467899999999999999977632 1 21222344556664
No 97
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.21 E-value=1e-10 Score=116.21 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|||||||+|.++..+++..+. .|+|+|.|+.++..++......+ -.|+.|+.+|+.++ + .+++||.|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-----p-~~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-----P-ALKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-----C-CcCCcCEEE
Confidence 4689999999999999999998765 59999999999876554433222 24799999999876 2 267899998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+...-.+ ...+ ..+++++++.|+|||.|++.+
T Consensus 195 s~~vl~H--~~dp------~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLYH--RRSP------LDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhhc--cCCH------HHHHHHHHHhcCCCcEEEEEE
Confidence 7521111 1111 378999999999999999864
No 98
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=2e-10 Score=105.24 Aligned_cols=131 Identities=13% Similarity=0.082 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh--h---hhhccCCCe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF--R---SIVASYPGK 303 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~--~---~~~~~~~~~ 303 (420)
.+..|||+|||+|.++..+++.+ +..+++|+|+|+.+ ...|+.++++|+.+.. . ..+ +++.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~--~~~~ 98 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERV--GDDK 98 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHh--CCCC
Confidence 46889999999999999999886 67799999999864 2357889999986531 1 112 3567
Q ss_pred EeEEEEeCCCCC---CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecc
Q 014708 304 LILVSIQCPNPD---FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 374 (420)
Q Consensus 304 ~d~i~~~fpdp~---~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D 374 (420)
+|.|+++.+.+. +...|+........+++.+.++|+|||++++......-...+.+.+++. +....+.+|
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~~~~~~~~ 171 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FEKVKVTKP 171 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hceEEEeCC
Confidence 999998653221 1111221111235789999999999999999754433334455555554 433444444
No 99
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=2.4e-10 Score=110.56 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||+|||+|..+..+|+... ...++++|+++.+++.+++++++.++.|+.+++.|+..+. . ...+||.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~----~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-A----AVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-h----hccCCCEEE
Confidence 467899999999999999998854 4699999999999999999999999999999999997752 1 234699998
Q ss_pred EeCCCCCCCC----cch-------hhh-----hhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 309 IQCPNPDFNR----PEH-------RWR-----MVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 309 ~~fpdp~~k~----~~~-------k~R-----l~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
+.- |+.-. +++ ... ..+.++|+.+.+.|||||+++..|-.
T Consensus 146 ~D~--Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 146 LDA--PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EcC--CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 862 22111 111 111 13567999999999999999988743
No 100
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=3.3e-10 Score=116.87 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..|||+|||+|..+..+++..++..++|+|+|+.+++.+++++.+.|+. ++++++|+.+. ..++ .+.+||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~-~~~~--~~~~fD~Vl~ 319 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDP-AQWW--DGQPFDRILL 319 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccc-hhhc--ccCCCCEEEE
Confidence 467899999999999999999987789999999999999999999988875 78999999865 2222 3567999987
Q ss_pred eCCC---------CCCCCcchhh-----hhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 310 QCPN---------PDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 310 ~fpd---------p~~k~~~~k~-----Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
+-|- |..+...... .-.+.++|+.+.+.|||||++++.|.
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 6331 1000000000 12346899999999999999998873
No 101
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=3.8e-10 Score=116.45 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=90.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|||+|||+|..+..+|+.. +..+++++|+|+.+++.+++++.+.|++|+.++++|+..+ +.. .+++||.|+
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~~~---~~~~fD~Vl 312 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-TEY---VQDTFDRIL 312 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-hhh---hhccCCEEE
Confidence 46789999999999999999885 5789999999999999999999999999999999999876 222 256799998
Q ss_pred EeCCCC----CCCCcchhh--------hh--hHHHHHHHHHhhccCCeEEEEEeC
Q 014708 309 IQCPNP----DFNRPEHRW--------RM--VQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 309 ~~fpdp----~~k~~~~k~--------Rl--~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
+.-|-- +.++.+.+. ++ .+.++|..+.+.|||||.++..|-
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 853210 011111111 11 457889999999999999999874
No 102
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.19 E-value=7.7e-11 Score=110.34 Aligned_cols=102 Identities=18% Similarity=0.075 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH------------hCCCcEEEEEcChhhhhhhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIV 297 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~------------~~l~nv~~~~~Da~~~~~~~~ 297 (420)
++.++||+|||.|..++.||++ ..+|+|+|+|+.+++.+.+.... ....+++++++|+.++....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 4679999999999999999987 78999999999999987543211 01236999999998762111
Q ss_pred ccCCCeEeEEEE-----eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 298 ASYPGKLILVSI-----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 298 ~~~~~~~d~i~~-----~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.+.||.|+- ++| | -.++++++.+.++|||||++++.+
T Consensus 111 ---~~~fD~i~D~~~~~~l~-~----------~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 111 ---LGPVDAVYDRAALIALP-E----------EMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred ---CCCcCEEEechhhccCC-H----------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 234555542 221 1 123579999999999999866653
No 103
>PLN02366 spermidine synthase
Probab=99.19 E-value=4.6e-10 Score=110.60 Aligned_cols=129 Identities=15% Similarity=0.176 Sum_probs=99.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--CC--CcEEEEEcChhhhhhhhhccCCCeE
Q 014708 229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKL 304 (420)
Q Consensus 229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--~l--~nv~~~~~Da~~~~~~~~~~~~~~~ 304 (420)
++..+||+||||.|..+..+++..+..+++.+|+++.+++.|++..... ++ ++++++++|+..++.+. +++.|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---PEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---cCCCC
Confidence 3568899999999999999987633468999999999999999987543 22 46999999998875431 25689
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHc
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 364 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~ 364 (420)
|.|++..++|+. +...+..++|++.+.++|+|||.+..++.. ......+.+.+.+.
T Consensus 167 DvIi~D~~dp~~----~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~ 226 (308)
T PLN02366 167 DAIIVDSSDPVG----PAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET 226 (308)
T ss_pred CEEEEcCCCCCC----chhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH
Confidence 999998888863 234567789999999999999999886553 33334455555554
No 104
>PRK03612 spermidine synthase; Provisional
Probab=99.19 E-value=3.3e-10 Score=119.60 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=101.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHh--HHh-----CCCcEEEEEcChhhhhhhhhccC
Q 014708 229 PAQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSL--QLS-----GITNGYFIATNATSTFRSIVASY 300 (420)
Q Consensus 229 ~~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~--~~~-----~l~nv~~~~~Da~~~~~~~~~~~ 300 (420)
+++.+|||||||+|..+..+++ +|. .+++++|+++++++.|+++. ... .-++++++++|+.+++.. .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----L 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----C
Confidence 3567899999999999999887 455 79999999999999999842 211 125799999999987532 3
Q ss_pred CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc----HHHHHHHHHHHHHcCC
Q 014708 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGK 366 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~----~~~~~~~~~~l~~~g~ 366 (420)
+++||.|++.+|+|+... ..++...+|++.+.+.|+|||.+++++.. ...+..+.+.+++.|+
T Consensus 371 ~~~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 568999999998886221 13466779999999999999999997642 3445567788888877
No 105
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=2.6e-10 Score=108.33 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc-CCCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~-~~~~~d~ 306 (420)
...+|||||||+|..++.+|+..| +.+++++|+++++++.|++++.+.++. +++++++|+.+.++...+. +.++||.
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 357899999999999999998854 789999999999999999999999986 5999999999886554321 2468999
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
|++. .. | . .+..+++.+.+.|+|||.+++
T Consensus 148 VfiD---a~-k-~------~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 148 AFVD---AD-K-P------NYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEEC---CC-H-H------HHHHHHHHHHHhcCCCeEEEE
Confidence 9884 22 1 0 124788999999999999886
No 106
>PTZ00146 fibrillarin; Provisional
Probab=99.18 E-value=7.8e-10 Score=107.28 Aligned_cols=127 Identities=13% Similarity=0.094 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|||+|||+|.++..+|+.. |...|+++|+|+.+.+...+.+... +|+.++..|+..-.. + .....++|.|+
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~-y-~~~~~~vDvV~ 207 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQK-Y-RMLVPMVDVIF 207 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhh-h-hcccCCCCEEE
Confidence 46799999999999999999985 5679999999998765555544322 689999999865311 1 11235799999
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-----Cc----HHHHHHHHHHHHHcCCceeE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----DI----EEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-----d~----~~~~~~~~~~l~~~g~~~~~ 370 (420)
+...+|+ + ...++..+.+.|||||.|++.. |. +..+.+-++.|++.+|...+
T Consensus 208 ~Dva~pd-----q-----~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e 268 (293)
T PTZ00146 208 ADVAQPD-----Q-----ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKE 268 (293)
T ss_pred EeCCCcc-----h-----HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEE
Confidence 8876655 1 1245667899999999999852 22 22222334788888888654
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.18 E-value=2.4e-10 Score=106.77 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++.+.++.|+.+.++|+.+.++ ..++||.|++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~I~~ 150 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-----AYAPFDRILV 150 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-----cCCCcCEEEE
Confidence 46789999999999999888875 4799999999999999999999999999999999865421 2468999988
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
..+-+ .+.+.+.+.|+|||.+++...
T Consensus 151 ~~~~~--------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 151 TAAAP--------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ccCch--------------hhhHHHHHhcCCCcEEEEEEc
Confidence 64322 334567889999999998764
No 108
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.18 E-value=3.4e-10 Score=103.73 Aligned_cols=104 Identities=11% Similarity=0.126 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.++||+|||.|..++.||++ +..|+++|+|+.+++.+++.+++.+++ ++..+.|+.+.. .+..+|.|+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~------~~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD------FPEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-------TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc------ccCCcCEEEE
Confidence 3678999999999999999999 889999999999999999999888886 999999987651 2567999875
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
...-.+ -.|-..+++++.+.+.++|||++++.+
T Consensus 101 t~v~~f------L~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMF------LQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGG------S-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecc------CCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 311111 111123689999999999999988854
No 109
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=3.2e-10 Score=105.91 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh--hhhh-ccCCCeEe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF--RSIV-ASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~--~~~~-~~~~~~~d 305 (420)
++..|||||||+|.++..+++.. +...|+|+|+++ + ....|+.++++|+.+.. +... +..+.++|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 46789999999999999999985 567999999998 1 23467999999998741 1110 11467899
Q ss_pred EEEEeCCCCCCCCc--chhh-hhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecc
Q 014708 306 LVSIQCPNPDFNRP--EHRW-RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 374 (420)
Q Consensus 306 ~i~~~fpdp~~k~~--~~k~-Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D 374 (420)
.|+.+....|.-.. +..+ -.....+|+.+.++|||||.|++.+-....+.+....++. .|....+.+|
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~~v~~~Kp 190 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKP 190 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-CceEEEEECC
Confidence 99886522221111 1100 0012478999999999999999965222222233344433 3555555555
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=99.17 E-value=3.6e-10 Score=108.53 Aligned_cols=124 Identities=14% Similarity=0.055 Sum_probs=93.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
..+|||+|||+|.+++.++++.+..+++|+|+++.+++.|+++. +++.++++|+.++. .+..||.|+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~------~~~kFDlIIsN 133 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFE------SNEKFDVVISN 133 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhc------ccCCCcEEEEc
Confidence 46799999999999999998887789999999999999998763 47899999998762 25679999997
Q ss_pred CCCCCCCCcchhh----hh----------hHHHHHHHHHhhccCCeEEEEEeCcHHHH------HHHHHHHHHcCCc
Q 014708 311 CPNPDFNRPEHRW----RM----------VQRSLVEAVSDLLVHDGKVFLQSDIEEVM------LRMKQQFLEYGKG 367 (420)
Q Consensus 311 fpdp~~k~~~~k~----Rl----------~~~~~l~~i~~~LkpgG~l~~~td~~~~~------~~~~~~l~~~g~~ 367 (420)
.|+......++ +. .-.+++......|+|+|.+.+.-+..+++ ++-...++++|+.
T Consensus 134 --PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 134 --PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred --CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 45533221111 11 12478899999999999988875554442 3455678888864
No 111
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=4.1e-10 Score=116.84 Aligned_cols=115 Identities=17% Similarity=0.063 Sum_probs=88.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|||+|||+|..+..+++.. +..+++|+|+|+.+++.+++++.+.|+.|+.++++|+..+. ++.+||.|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~------~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS------PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc------cCCCCCEEE
Confidence 46789999999999999999874 45699999999999999999999999999999999998752 356799998
Q ss_pred EeCCC---------C---CCCCcchhhh--hhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 309 IQCPN---------P---DFNRPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 309 ~~fpd---------p---~~k~~~~k~R--l~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
+.-|- | |......-.+ -.+..+|..+.+.|||||++++.|..
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 75221 1 1100000000 13467999999999999999998843
No 112
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.17 E-value=2.8e-10 Score=112.09 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=79.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCC-CeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYP-GKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~-~~~d~ 306 (420)
++..|||+|||+|..+..|+++.+ ..+|+|+|+|++|++.|++++..... -++.++++|+.+.++ +..... .....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEE
Confidence 357899999999999999999976 58999999999999999998765431 257889999987522 111000 11222
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
+++..+-.++. +. -..++|+++++.|+|||.|++..|.
T Consensus 142 ~~~gs~~~~~~---~~---e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 142 FFPGSTIGNFT---PE---EAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEecccccCCC---HH---HHHHHHHHHHHhcCCCCEEEEeccC
Confidence 22222222211 11 1247999999999999999987654
No 113
>PRK05785 hypothetical protein; Provisional
Probab=99.17 E-value=3.1e-10 Score=107.29 Aligned_cols=90 Identities=7% Similarity=0.021 Sum_probs=71.7
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+..|||||||+|.++..+++.+ +.+++|+|+|++|++.|+++. .++++|+.++ |+++++||.|++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l-----p~~d~sfD~v~~~ 117 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL-----PFRDKSFDVVMSS 117 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC-----CCCCCCEEEEEec
Confidence 5789999999999999999887 579999999999999997641 3578888775 3368999999987
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCe
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 342 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG 342 (420)
|.-.+..+ .++.+++++|+|||..
T Consensus 118 ~~l~~~~d--------~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 FALHASDN--------IEKVIAEFTRVSRKQV 141 (226)
T ss_pred ChhhccCC--------HHHHHHHHHHHhcCce
Confidence 64322111 1479999999999953
No 114
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.16 E-value=6e-10 Score=108.13 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC----CCcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~----l~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
++.+||+||||+|.++..+++..+..+++++|+++.+++.|++.....+ -.+++++.+|+..++.. .+++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCCcc
Confidence 4569999999999999999887667899999999999999999875432 24689999999887542 357899
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
.|++..++|+.. ...+...++++.+.+.|+|||.+++.+..
T Consensus 148 vIi~D~~~~~~~----~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 148 VIIVDSTDPVGP----AETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EEEEeCCCCCCc----ccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 999987777522 22355679999999999999999997654
No 115
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.15 E-value=2.8e-10 Score=104.32 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=92.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
....|||||||+|..+..|... ...++|+|||+.|++.|.++--+ -.++.+|+-.-+ |+.+++||.++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-----gdlil~DMG~Gl----pfrpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-----GDLILCDMGEGL----PFRPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-----cCeeeeecCCCC----CCCCCccceEEE
Confidence 4678999999999999998876 68999999999999999874222 256777876553 557899998754
Q ss_pred eCCCCC-----CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe--CcHHHHHHHHHHHHHcCC
Q 014708 310 QCPNPD-----FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGK 366 (420)
Q Consensus 310 ~fpdp~-----~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t--d~~~~~~~~~~~l~~~g~ 366 (420)
.-.-.| ....++++|+. .|+..++.+|++|++.+++. .++.+.+.+.+.-...||
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~--~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLL--RFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred eeeeeeecccCccccChHHHHH--HHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 332233 23345777885 79999999999999988875 455566656665555564
No 116
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.14 E-value=5.1e-10 Score=104.35 Aligned_cols=104 Identities=14% Similarity=0.206 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|||+|||+|.++..+++..|. .+++|+|+++.++..++++.. ...+++++++|+.+.. + .++.+|.|+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~---~--~~~~~D~i~ 111 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP---F--EDNSFDAVT 111 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC---C--CCCcEEEEE
Confidence 4679999999999999999999887 799999999999999998865 3457999999998752 2 456899998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+++.-.+... ...+++.+.+.|+|||++++..
T Consensus 112 ~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 112 IAFGLRNVTD--------IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EeeeeCCccc--------HHHHHHHHHHHcCCCcEEEEEE
Confidence 7643221111 1378999999999999998753
No 117
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.14 E-value=7.4e-10 Score=102.51 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.++||+|||+|.+++.++.+. ..+++++|+++.+++.+++|++..++.|++++++|+.+.+.. ...++|.|++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~~ 127 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVFV 127 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEEE
Confidence 35789999999999999755554 368999999999999999999999988999999999876421 2456999988
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHh--hccCCeEEEEEeCc
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDI 350 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~--~LkpgG~l~~~td~ 350 (420)
+ .|+.+. +.+..++.+.. +|+|++.+++++..
T Consensus 128 D--PPy~~g-------~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 128 D--PPFRKG-------LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C--CCCCCC-------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 6 343222 12355565555 48999999998743
No 118
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.14 E-value=5.3e-10 Score=105.40 Aligned_cols=104 Identities=16% Similarity=0.236 Sum_probs=83.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+.+|||+|||+|.++..+++..| +.+++|+|+++.+++.+++++...+. .++.++++|+.+.. + .++++|.|+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~--~~~~~D~I~ 126 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP---F--PDNSFDAVT 126 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC---C--CCCCccEEE
Confidence 57899999999999999999987 78999999999999999999876554 46999999997751 1 356899997
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+.+.-.+... ...+++.+.+.|+|||.+++.
T Consensus 127 ~~~~l~~~~~--------~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 127 IAFGLRNVPD--------IDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EecccccCCC--------HHHHHHHHHHhccCCcEEEEE
Confidence 7532211111 137899999999999998774
No 119
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=4.9e-10 Score=111.02 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||||||+|.++..+|+..+. ..++|+|+++++++.|++++.+.+..|+.++++|+..... ...++|.|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii 154 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIF 154 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEE
Confidence 3678999999999999999998753 5799999999999999999999999999999999876531 235799998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
+.+.-+ .....+.+.|+|||.+++..+
T Consensus 155 ~~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 155 VTVGVD--------------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ECCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence 863221 233456789999999988654
No 120
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.13 E-value=8.7e-11 Score=110.45 Aligned_cols=100 Identities=19% Similarity=0.372 Sum_probs=79.6
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC------cEEEEEcChhhhhhhhhccCCCeE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT------NGYFIATNATSTFRSIVASYPGKL 304 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~------nv~~~~~Da~~~~~~~~~~~~~~~ 304 (420)
+..|||+|||.|.++..||+. ..+|+|||+++++++.|++.....-.. .+.+.+.|++.. .+.|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--------~~~f 159 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--------TGKF 159 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------cccc
Confidence 466999999999999999998 689999999999999999984432221 266777888765 3459
Q ss_pred eEEEEe-----CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014708 305 ILVSIQ-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 353 (420)
Q Consensus 305 d~i~~~-----fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~ 353 (420)
|.|.+. .-|| ++|++.+.+.|||||.+++.|-+...
T Consensus 160 DaVvcsevleHV~dp-------------~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 160 DAVVCSEVLEHVKDP-------------QEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred ceeeeHHHHHHHhCH-------------HHHHHHHHHHhCCCCceEeeehhhhH
Confidence 999775 1233 48999999999999999998855443
No 121
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.13 E-value=8.4e-10 Score=103.55 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=100.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.++||+|||+|.++..+++. ...++|+|+|++++..|++++...+. .|+.|.++|+... +.+||.|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--------CCCcCEEE
Confidence 3678999999999999999986 56899999999999999999877765 4799999999765 36799987
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCC
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE 388 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~ 388 (420)
+...-.++... ....+++++.+.+++++.+.+.. ...+. .....+... +... .. . ..
T Consensus 125 ~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~~~~-~~~~~-~~~~~~~~~-~~~~---~~-------~----~~ 181 (219)
T TIGR02021 125 CMDVLIHYPAS------DMAKALGHLASLTKERVIFTFAP-KTAWL-AFLKMIGEL-FPGS---SR-------A----TS 181 (219)
T ss_pred EhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEEECC-CchHH-HHHHHHHhh-CcCc---cc-------c----cc
Confidence 64221111000 11367888999999887777643 22221 122222221 1100 00 0 00
Q ss_pred CCCCCCCHHHHHHHHCCCCeEEEEE
Q 014708 389 NSFGVRSDWEQHVIDRGAPMYRLML 413 (420)
Q Consensus 389 ~~~~~~T~~E~~~~~~G~~i~~~~~ 413 (420)
.-....++++..+...|..+.....
T Consensus 182 ~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 182 AYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred eEEecHHHHHHHHHHcCceeeeeec
Confidence 1123567899999999998877653
No 122
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.12 E-value=8.8e-10 Score=120.28 Aligned_cols=134 Identities=10% Similarity=0.168 Sum_probs=101.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+.+|||+|||+|.+++.+|+. ....|+++|+|+.+++.|++|+..++++ +++|+++|+.+++.. ...+||.|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~----~~~~fDlI 612 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE----AREQFDLI 612 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH----cCCCcCEE
Confidence 3678999999999999999986 3457999999999999999999999885 799999999887532 24689999
Q ss_pred EEeCCCCCCCCcch-----hhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 308 SIQCPNPDFNRPEH-----RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 308 ~~~fpdp~~k~~~~-----k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
+++ .|.+..... ...-...+++..+.+.|+|||.+++.++... +....+.+.+.|+....+
T Consensus 613 ilD--PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 613 FID--PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred EEC--CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCeEEEE
Confidence 886 332221110 0011235788999999999999999886544 334577788888776544
No 123
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.11 E-value=4.3e-10 Score=102.33 Aligned_cols=121 Identities=12% Similarity=0.211 Sum_probs=85.1
Q ss_pred cCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 226 f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
++++.-..++|+|||.|.++..||.+. -.++++|+|+.+++.|++++. +.+||+|++.|+.... +++.||
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~------P~~~FD 108 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW------PEGRFD 108 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---------SS-EE
T ss_pred cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC------CCCCee
Confidence 343334679999999999999999994 689999999999999999985 4579999999997753 588999
Q ss_pred EEEEe----CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc---------HHHHHHHHHHHHHcC
Q 014708 306 LVSIQ----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---------EEVMLRMKQQFLEYG 365 (420)
Q Consensus 306 ~i~~~----fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~---------~~~~~~~~~~l~~~g 365 (420)
.|++. |-++. . .-..+++.+...|+|||.+++.+=. ..=.+.+.++|.++-
T Consensus 109 LIV~SEVlYYL~~~----~-----~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 109 LIVLSEVLYYLDDA----E-----DLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp EEEEES-GGGSSSH----H-----HHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred EEEEehHhHcCCCH----H-----HHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 99875 22221 0 1136889999999999999998621 112455777777763
No 124
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.11 E-value=1.1e-09 Score=113.63 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=95.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++..|||+|||+|.+++.+|+.. ..++|+|+|+.|++.|++++..++++|++|+++|+.+.+... +..+.++|.|++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~fD~Vi~ 373 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ-PWALGGFDKVLL 373 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh-hhhcCCCCEEEE
Confidence 35789999999999999999884 689999999999999999999999999999999998764221 113467999987
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
+ .|+. . . .+.++.+.+ |+|++.+++.+|...+...+. .|.+.||....+
T Consensus 374 d--PPr~--g------~-~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~-~L~~~gY~l~~i 422 (443)
T PRK13168 374 D--PPRA--G------A-AEVMQALAK-LGPKRIVYVSCNPATLARDAG-VLVEAGYRLKRA 422 (443)
T ss_pred C--cCCc--C------h-HHHHHHHHh-cCCCeEEEEEeChHHhhccHH-HHhhCCcEEEEE
Confidence 5 2321 1 1 245555555 799999999987777666555 455667776544
No 125
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.11 E-value=5.2e-10 Score=113.71 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||||||+|.++..+|+.+ +.+|+|+|+|+++++.|++++. ++ ++++...|..++ +++||.|+.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--------~~~fD~Ivs 234 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--------NGQFDRIVS 234 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--------CCCCCEEEE
Confidence 46799999999999999999875 6799999999999999999874 33 488888887653 467999876
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
...-.+.... -.+.+++++.++|||||++++.+
T Consensus 235 ~~~~ehvg~~------~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 235 VGMFEHVGPK------NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred eCchhhCChH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence 5211111000 11478999999999999999864
No 126
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.10 E-value=3.5e-10 Score=105.46 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|||||||+|.++..||+. .+...|+++|+.+..++.|++++...+..|+.++++|....++ ....||.|+
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-----~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-----EEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-----GG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-----cCCCcCEEE
Confidence 4789999999999999999998 4556799999999999999999999999999999999987643 246799999
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
+...-+ +.-..+.+.|++||++++-..
T Consensus 147 v~~a~~--------------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 147 VTAAVP--------------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ESSBBS--------------S--HHHHHTEEEEEEEEEEES
T ss_pred Eeeccc--------------hHHHHHHHhcCCCcEEEEEEc
Confidence 975333 122345668999999998543
No 127
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.10 E-value=7.3e-10 Score=108.30 Aligned_cols=121 Identities=18% Similarity=0.295 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||+|||||-+++..++.. ..+++|+|+++.+++.|++|+..+++.+ ++......+. ....||.|..
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~-------~~~~~dlvvA 231 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL-------VEGKFDLVVA 231 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT-------CCS-EEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc-------ccccCCEEEE
Confidence 46799999999999999988873 4589999999999999999999999876 3322222222 3588999999
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
|--. ..+ ..++..+.+.|+|||+|++.==-....+.+.+.+++ |+.....
T Consensus 232 NI~~----------~vL-~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 232 NILA----------DVL-LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp ES-H----------HHH-HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred CCCH----------HHH-HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 8211 111 367788899999999999963234455678888876 8776543
No 128
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.09 E-value=1.6e-09 Score=86.59 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=81.4
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 312 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp 312 (420)
+++|+|||+|.++..+++ .+..+++++|+++.++..+++.....+..++++++.|..+... . ....+|.++++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--E--ADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--c--cCCceEEEEEccc
Confidence 379999999999999998 6788999999999999999865545556789999999987632 1 3567999988754
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 313 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 313 dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-.++ .-....+++.+.+.|+|||.+++.
T Consensus 76 ~~~~-------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4331 012248899999999999999875
No 129
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=1.1e-09 Score=103.31 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=86.5
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
...+||+|||+|++++.++..-|.+.++++|.|+.++..|.+|+++.++.+ +..++.++..-...-.+...+.+|.+..
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 458999999999999999999999999999999999999999999999876 5555444432211001124678899988
Q ss_pred eCCCCCCCCcc------------hhhhhh--------HHHHHHHHHhhccCCeEEEEEeCc
Q 014708 310 QCPNPDFNRPE------------HRWRMV--------QRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 310 ~fpdp~~k~~~------------~k~Rl~--------~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
| .|+.++.+ ++..|. ...++.-+.|.|+|||.+.|+++.
T Consensus 229 N--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 229 N--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred C--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 7 45533321 111111 145667788999999999999873
No 130
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.08 E-value=2.7e-09 Score=110.31 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=94.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||+|||+|.+++.+|+.. ..++|+|+++.+++.|++|+..++++|++|+++|+.+.++... ..+.++|.|++
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~-~~~~~~D~vi~ 368 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP-WAGQIPDVLLL 368 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-hcCCCCCEEEE
Confidence 35789999999999999999873 5899999999999999999999999999999999988654321 12457899977
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
. |-.. . +...+++.+.+ |+|++.+++.++... +..-...|.+.||....
T Consensus 369 d---PPr~-G------~~~~~l~~l~~-l~~~~ivyvsc~p~t-lard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 369 D---PPRK-G------CAAEVLRTIIE-LKPERIVYVSCNPAT-LARDLEFLCKEGYGITW 417 (431)
T ss_pred C---cCCC-C------CCHHHHHHHHh-cCCCEEEEEcCCHHH-HHHHHHHHHHCCeeEEE
Confidence 4 3211 1 12467776654 899999998776444 43345556677776543
No 131
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.08 E-value=2.3e-09 Score=100.59 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=82.9
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+..|||+|||+|.++..+++.. ..++|+|+++.++..+++++...+..++++.+.|+.++... .++++|.|++.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK----GAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC----CCCCccEEEeh
Confidence 5789999999999999998874 46999999999999999998877766799999999876311 24689999875
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
..-.+. ..+ ..+++.+.+.|+|||.+++.+..
T Consensus 120 ~~l~~~--~~~------~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 120 EVLEHV--PDP------QAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hHHHhC--CCH------HHHHHHHHHhcCCCcEEEEEecC
Confidence 321111 111 37899999999999999987643
No 132
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.08 E-value=3.1e-10 Score=109.78 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=76.8
Q ss_pred CCEEEEEcCCccH----HHHHHHHhCC-----CCeEEEEeCChHHHHHHHHHhHH----hC-------------------
Q 014708 231 QPLVVDIGSGNGL----FLLGMARKRK-----DLNFLGLEVNGKLVTHCRDSLQL----SG------------------- 278 (420)
Q Consensus 231 ~~~vLDIGcG~G~----~~~~lA~~~P-----~~~viGiDis~~~i~~A~~~~~~----~~------------------- 278 (420)
+.+|+|+|||+|. +++.+++..| +..++|+|+|+.|++.|++.+-. .+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4689999999997 4555666554 57899999999999999985310 01
Q ss_pred ---C-CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 279 ---I-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 279 ---l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+ .+|+|.+.|+.+.. + ++++||.|++...-.++.. -...++++.+++.|+|||+|++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~---~--~~~~fD~I~crnvl~yf~~------~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAES---P--PLGDFDLIFCRNVLIYFDE------PTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCC---C--ccCCCCEEEechhHHhCCH------HHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1 36899999998751 1 3678999987422111111 012479999999999999999853
No 133
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.9e-09 Score=95.02 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=104.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+...++|||||+|..+..|++. -|+..+++.|+++.+++...+.+..++. ++..++.|....+ ..+++|.+.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l------~~~~VDvLv 115 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGL------RNESVDVLV 115 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhh------ccCCccEEE
Confidence 3678999999999999999887 6899999999999999999998877665 4889999998775 358999998
Q ss_pred EeCC---CCC-CCC---------cchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 309 IQCP---NPD-FNR---------PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 309 ~~fp---dp~-~k~---------~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
+|=| .+. +.. ....-|-+..+++.++...|.|.|.|++.+-..+-.+++...++..+|....
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRI 190 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeE
Confidence 8721 111 110 0011233446899999999999999999876666677888889998887643
No 134
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.08 E-value=1.9e-09 Score=100.18 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=87.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccC-CCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASY-PGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~-~~~~d~ 306 (420)
....||||||++|..++.+|+..| +.+++.+|++++..+.|++++.+.|+. +++++.+|+.+.++...+.. .+.||.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 367899999999999999999876 589999999999999999999999985 69999999999876654311 358999
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
||+. .+ +. -+..+++.+.+.|+|||.+++
T Consensus 125 VFiD---a~--K~------~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 125 VFID---AD--KR------NYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEE---ST--GG------GHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEc---cc--cc------chhhHHHHHhhhccCCeEEEE
Confidence 9885 22 11 234788999999999999988
No 135
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.08 E-value=1.6e-09 Score=107.38 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=90.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.+|||+|||+|.+++.+|+. ..+++|+|+|+.+++.|++++..++++|++|+++|+.++... ....+|.|+++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEEC
Confidence 578999999999999999985 579999999999999999999999998999999999886421 23468999886
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
.|. .. ..+.+++.+ ..++|++.+++.++...+...... + .||....+
T Consensus 248 --PPr--~G------~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~-l--~~y~~~~~ 294 (315)
T PRK03522 248 --PPR--RG------IGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAH-L--PGYRIERV 294 (315)
T ss_pred --CCC--CC------ccHHHHHHH-HHcCCCeEEEEECCcccchhHHhh-c--cCcEEEEE
Confidence 221 11 112343333 447899999998877776665544 3 46665443
No 136
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.06 E-value=4.3e-10 Score=105.68 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH------------hCCCcEEEEEcChhhhhhhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIV 297 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~------------~~l~nv~~~~~Da~~~~~~~~ 297 (420)
++.+|||+|||.|..++.||++ +.+|+|+|+|+.+++.+.+.... ....++++.++|+.++...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-- 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-- 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence 4579999999999999999987 78999999999999987542110 0124689999999887321
Q ss_pred ccCCCeEeEEE-----EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 298 ASYPGKLILVS-----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 298 ~~~~~~~d~i~-----~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
....||.|+ +.+| | . .+++++..+.++|+|||++++
T Consensus 113 --~~~~fd~v~D~~~~~~l~-~-------~---~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 --DLADVDAVYDRAALIALP-E-------E---MRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred --cCCCeeEEEehHhHhhCC-H-------H---HHHHHHHHHHHHcCCCCeEEE
Confidence 124677775 2221 1 1 235899999999999997555
No 137
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.06 E-value=4e-09 Score=107.02 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=94.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.++||+|||+|.+++.+|.. ...++|+|+++.+++.|++|+..++++|++|+++|+.+++.. ...++|.|+++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~vi~D 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA----QMSAPELVLVN 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----cCCCCCEEEEC
Confidence 468999999999999999965 578999999999999999999999999999999999876432 12458998775
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
.|. .. ..+.+++.+. .++|++.+++.++...+...+... .||....+
T Consensus 308 --PPr-~G-------~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~ 354 (374)
T TIGR02085 308 --PPR-RG-------IGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERV 354 (374)
T ss_pred --CCC-CC-------CcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence 232 11 2236666665 479999999999877777766654 57766544
No 138
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.06 E-value=5.4e-10 Score=98.61 Aligned_cols=96 Identities=20% Similarity=0.316 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++..|||||||+|.++..+++.. .+++|+|+|+.+++. .++.+...+..... . ++++||.|++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~---~--~~~~fD~i~~ 84 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK----------RNVVFDNFDAQDPP---F--PDGSFDLIIC 84 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH----------TTSEEEEEECHTHH---C--HSSSEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh----------hhhhhhhhhhhhhh---c--cccchhhHhh
Confidence 57899999999999999997763 399999999999987 23344444443321 1 4789999998
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
+..-.|..+ + ..+|+.+.+.|||||++++.+..
T Consensus 85 ~~~l~~~~d--~------~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 85 NDVLEHLPD--P------EEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ESSGGGSSH--H------HHHHHHHHHCEEEEEEEEEEEEB
T ss_pred HHHHhhccc--H------HHHHHHHHHhcCCCCEEEEEEcC
Confidence 843333221 1 38999999999999999998744
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.5e-10 Score=101.60 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..|||||||+|..+.-||+.. .+|+.+|+.++..+.|++++...|+.||.+.++|...-++ ....||.|++
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-----~~aPyD~I~V 144 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-----EEAPYDRIIV 144 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-----CCCCcCEEEE
Confidence 47899999999999999999984 3999999999999999999999999999999999988743 3578999988
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
.-.-|. .=+.+.+.||+||++++-..
T Consensus 145 taaa~~--------------vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 145 TAAAPE--------------VPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred eeccCC--------------CCHHHHHhcccCCEEEEEEc
Confidence 743221 11234568999999998654
No 140
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.05 E-value=8.9e-09 Score=101.78 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=95.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-CCC-cEEEEE-cChhhhhhhhhccCCCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GIT-NGYFIA-TNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-~l~-nv~~~~-~Da~~~~~~~~~~~~~~~d~ 306 (420)
....+||||||+|++...|+.+.++++++|+|+++.+++.|+++++.+ ++. ++.+.+ .|..+++.... ...+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceEE
Confidence 357899999999999999999989999999999999999999999998 676 477754 55555432221 13568999
Q ss_pred EEEeCCCCCCCCcch-------hhhhhH--------HHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 307 VSIQCPNPDFNRPEH-------RWRMVQ--------RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 307 i~~~fpdp~~k~~~~-------k~Rl~~--------~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
|++| .|++..... +.|-+. -.|=....+.+.+||.+.|.. .+.++..+...+.+|+..-+
T Consensus 193 ivcN--PPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~---~mi~eS~~~~~~~gwftsmv 267 (321)
T PRK11727 193 TLCN--PPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIK---RMIEESKAFAKQVLWFTSLV 267 (321)
T ss_pred EEeC--CCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeeh---HhhHHHHHHHhhCcEEEEEe
Confidence 9998 666544322 111000 011123456678999988754 35556677777888776544
No 141
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.04 E-value=1.8e-09 Score=100.49 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..|||||||+|.++..|++..|..+++|+|+|+.+++.|+++. .++.+.++|+.+. + ++++||.|++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~----~--~~~sfD~V~~ 111 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP----F--KDNFFDLVLT 111 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC----C--CCCCEEEEEE
Confidence 356799999999999999999888999999999999999998764 3577888888652 2 5789999987
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
+..-.+.. + -...++++++.+++ ++++++
T Consensus 112 ~~vL~hl~---p---~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 112 KGVLIHIN---P---DNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred CChhhhCC---H---HHHHHHHHHHHhhc--CcEEEE
Confidence 63221110 0 01137888888887 345544
No 142
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.04 E-value=2.5e-09 Score=99.76 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEE-cChhhhhhhhhccCCCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIA-TNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~-~Da~~~~~~~~~~~~~~~d~ 306 (420)
...++||||++.|.+++.||..-| +.+++.+|+++++.+.|+++.++.|+.+ +.++. +|+.+.+.. . ..++||.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~--~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-L--LDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-c--cCCCccE
Confidence 468899999999999999999988 8899999999999999999999999987 88888 599988654 2 4789999
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
||+. .+ +. .++++++.+.+.|+|||.+++
T Consensus 136 iFID---ad--K~------~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFID---AD--KA------DYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEe---CC--hh------hCHHHHHHHHHHhCCCcEEEE
Confidence 9884 32 11 246999999999999999987
No 143
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.04 E-value=1.2e-09 Score=114.25 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++..+||||||+|.++..+++.. .+++|+|+|+.+++.+++.. ...+|+.++++|+.... ++.++++||.|++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~---~~~~~~~fD~I~~ 109 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPD---LNISDGSVDLIFS 109 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccc---cCCCCCCEEEEeh
Confidence 35789999999999999999884 58999999999998876532 23468999999996431 1225678999998
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.++-.+..... -.++++++.++|||||++++.
T Consensus 110 ~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 110 NWLLMYLSDKE------VENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEEE
Confidence 75433321110 147999999999999999884
No 144
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.03 E-value=3.8e-09 Score=109.03 Aligned_cols=117 Identities=13% Similarity=0.212 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..|||+|||+|..+..+++..++.+++|+|+++.+++.+++++++.|+. ++.+.++|+... ..+. .+.+||.|+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~--~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWA--ENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccc--cccccCEEE
Confidence 468999999999999999999888889999999999999999999998886 244477777543 1111 356799998
Q ss_pred EeCC---------CCCC---CCcchhhh--hhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 309 IQCP---------NPDF---NRPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 309 ~~fp---------dp~~---k~~~~k~R--l~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
+.-| .|.. ...+.-.+ -++.++|+.+.+.|||||+++..|-
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 7521 1110 00000001 1357899999999999999998863
No 145
>PLN02476 O-methyltransferase
Probab=99.03 E-value=4e-09 Score=102.06 Aligned_cols=106 Identities=12% Similarity=0.183 Sum_probs=88.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc-CCCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~-~~~~~d~ 306 (420)
...+||||||++|.+++.+|+..| +..++.+|.+++.++.|++++++.|+. +++++.+|+.+.++..... .+++||.
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 367899999999999999998864 678999999999999999999999987 6999999999987654311 1368999
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
|++ |++ | . -++.+++.+.+.|+|||.+++
T Consensus 198 VFI---Da~-K-~------~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 198 AFV---DAD-K-R------MYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEE---CCC-H-H------HHHHHHHHHHHhcCCCcEEEE
Confidence 987 454 1 1 235889999999999999887
No 146
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.01 E-value=6.7e-09 Score=97.72 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=93.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|||||||+|.++..+++.. ..++|+|+|+.+++.|+++....+. .++.+..+|... .+++||.|+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~v~ 132 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDTVV 132 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCEEE
Confidence 46789999999999999999874 4699999999999999999887776 579999999432 256899997
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCC
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE 388 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~ 388 (420)
+...-.++.... ....++.+.+.+++++.+.+ ........ ....+.. +... .+ +. ..
T Consensus 133 ~~~~l~~~~~~~------~~~~l~~l~~~~~~~~~i~~-~~~~~~~~-~~~~l~~--~~~~---~~------~~----~~ 189 (230)
T PRK07580 133 CLDVLIHYPQED------AARMLAHLASLTRGSLIFTF-APYTPLLA-LLHWIGG--LFPG---PS------RT----TR 189 (230)
T ss_pred EcchhhcCCHHH------HHHHHHHHHhhcCCeEEEEE-CCccHHHH-HHHHhcc--ccCC---cc------CC----CC
Confidence 752211111100 13677777777655554443 22222111 1111111 1100 00 00 01
Q ss_pred CCCCCCCHHHHHHHHCCCCeEEEEE
Q 014708 389 NSFGVRSDWEQHVIDRGAPMYRLML 413 (420)
Q Consensus 389 ~~~~~~T~~E~~~~~~G~~i~~~~~ 413 (420)
.......+++..+.+.|..+.+..-
T Consensus 190 ~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 190 IYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred ccccCHHHHHHHHHHCCCceEeeee
Confidence 1234567788888888888877554
No 147
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=1e-09 Score=99.76 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=80.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEE-EEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~-~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
...+||||||+|..-.-+-- -|...++++|.++.|-+.|.+++.+....++. |+.++++++ ++ + +++++|.|..
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~-l--~d~s~DtVV~ 151 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQ-L--ADGSYDTVVC 151 (252)
T ss_pred ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cc-c--ccCCeeeEEE
Confidence 35589999999987654432 36789999999999999999999888777866 999999988 32 2 6899999854
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.|.-.-..+. .+.|+++.++|+|||+++|.
T Consensus 152 TlvLCSve~~--------~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 152 TLVLCSVEDP--------VKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEeccCCH--------HHHHHHHHHhcCCCcEEEEE
Confidence 4321111110 27899999999999998874
No 148
>PRK06202 hypothetical protein; Provisional
Probab=98.98 E-value=3.9e-09 Score=99.96 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
.+.+|||||||+|.++..|++. .|+.+++|+|+|+.|++.|+++... .|+.+.+.++..+ + ..++++|
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~l-~----~~~~~fD 131 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDEL-V----AEGERFD 131 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---CCCeEEEEecccc-c----ccCCCcc
Confidence 4578999999999999888864 4667999999999999999887543 3466666666544 1 1467899
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
.|++++.--+..+. ...++++++.++++ |.+++
T Consensus 132 ~V~~~~~lhh~~d~------~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 132 VVTSNHFLHHLDDA------EVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred EEEECCeeecCChH------HHHHHHHHHHHhcC--eeEEE
Confidence 99887532221111 01379999999998 44444
No 149
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.95 E-value=2.2e-08 Score=99.03 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-----CCcEEEEEcChhhhhhhhhccCCCeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-----l~nv~~~~~Da~~~~~~~~~~~~~~~ 304 (420)
.+.+|||+|||+|.++..+++. ..+++|+|+|+.|++.|++++...+ ..++.|.+.|+.++ +++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--------~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--------SGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--------CCCc
Confidence 3579999999999999999987 6799999999999999999987642 34688999997543 4678
Q ss_pred eEEEEe
Q 014708 305 ILVSIQ 310 (420)
Q Consensus 305 d~i~~~ 310 (420)
|.|++.
T Consensus 214 D~Vv~~ 219 (315)
T PLN02585 214 DTVTCL 219 (315)
T ss_pred CEEEEc
Confidence 988654
No 150
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.93 E-value=2e-08 Score=101.48 Aligned_cols=123 Identities=15% Similarity=0.189 Sum_probs=91.1
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccC-----------
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY----------- 300 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~----------- 300 (420)
..+||++||+|.+++.+++.. ..++|+|+++.+++.|++|+..++++|++|+++|+.++++......
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 469999999999999999885 4899999999999999999999999999999999998764321100
Q ss_pred CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
...+|.|++ ||-.. . +.+.+++.+.+ |++.+|+.+|...+...+.... + ||....+
T Consensus 286 ~~~~D~v~l---DPPR~-G------~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v 341 (362)
T PRK05031 286 SYNFSTIFV---DPPRA-G------LDDETLKLVQA---YERILYISCNPETLCENLETLS-Q-THKVERF 341 (362)
T ss_pred CCCCCEEEE---CCCCC-C------CcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEE
Confidence 124788877 55322 1 22356666654 7899999988767666555443 3 6765443
No 151
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.9e-08 Score=90.71 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++..|+|+|||||.+++..+...| ..|+|+|+++++++.+++|+.+ ...++.|+++|+.++ ...+|.+..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~--------~~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF--------RGKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc--------CCccceEEE
Confidence 578899999999999999887654 6899999999999999999988 556899999999886 567887777
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~ 368 (420)
| .||=.++.|.. ..||....+.- -.++-.. ...+.+.+......+|...
T Consensus 115 N--PPFG~~~rhaD----r~Fl~~Ale~s---~vVYsiH-~a~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 115 N--PPFGSQRRHAD----RPFLLKALEIS---DVVYSIH-KAGSRDFVEKFAADLGGTV 163 (198)
T ss_pred C--CCCccccccCC----HHHHHHHHHhh---heEEEee-ccccHHHHHHHHHhcCCeE
Confidence 6 56533322222 36666555543 2333222 2335566777888888664
No 152
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.93 E-value=2.7e-08 Score=90.41 Aligned_cols=152 Identities=14% Similarity=0.182 Sum_probs=99.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+|||+|||.|.++..|.+. .+....|+|++++.+..+.++ | +.++++|+.+-+.. | ++++||.|++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL~~-f--~d~sFD~VIl 81 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGLAD-F--PDQSFDYVIL 81 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhHhh-C--CCCCccEEeh
Confidence 4799999999999999888875 589999999999998777553 3 56899999987653 3 6999999987
Q ss_pred eCCCCCCCCcchhhhhhH-HHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeecc-ccccccCCCCCCC
Q 014708 310 QCPNPDFNRPEHRWRMVQ-RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD-ECDTKTNQGGWLG 387 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~-~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D-~~~~~~~~~~~~~ 387 (420)
+- -.- .+.+ ..+|+++ |+-|...++...+-.|...-.+.+ -.|-..+ ++. +| .|..
T Consensus 82 sq--tLQ-------~~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~-~~GrmPv--t~~lPy-------~WYd 139 (193)
T PF07021_consen 82 SQ--TLQ-------AVRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLL-LRGRMPV--TKALPY-------EWYD 139 (193)
T ss_pred Hh--HHH-------hHhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHH-hcCCCCC--CCCCCC-------cccC
Confidence 61 110 0111 2455555 455777777666655555444433 2232221 111 12 1332
Q ss_pred CCC--CCCCCHHHHHHHHCCCCeEEEEEE
Q 014708 388 ENS--FGVRSDWEQHVIDRGAPMYRLMLS 414 (420)
Q Consensus 388 ~~~--~~~~T~~E~~~~~~G~~i~~~~~~ 414 (420)
.+. .-....||....+.|..|-+-.+-
T Consensus 140 TPNih~~Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 140 TPNIHLCTIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred CCCcccccHHHHHHHHHHCCCEEEEEEEE
Confidence 222 234467899999999999775553
No 153
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.92 E-value=1.1e-08 Score=96.72 Aligned_cols=105 Identities=23% Similarity=0.289 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..|||||||+|.++..+++. ..+++|+|+++.++..|++++...+. ++.+...|+...... .++.||.|++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE----HPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh----cCCCccEEEE
Confidence 3578999999999999999886 56899999999999999998876665 688888988776311 3568999977
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
...-.+.. .+ ..+++.+.+.|+|||.+++.+-
T Consensus 121 ~~~l~~~~--~~------~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 121 MEMLEHVP--DP------ASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhHhhccC--CH------HHHHHHHHHHcCCCcEEEEEec
Confidence 53212111 11 3789999999999999998753
No 154
>PLN02823 spermine synthase
Probab=98.92 E-value=2.6e-08 Score=99.25 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=98.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh----CCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~----~l~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
+...||.||+|.|..+..+.+..+..+++.+|+++++++.|++..... .-++++++.+|+..++.. .+++||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----RDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----CCCCcc
Confidence 457899999999999999988767789999999999999999987532 135799999999998642 367899
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHH-HHHhhccCCeEEEEEeCc------HHHHHHHHHHHHHc
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEY 364 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~-~i~~~LkpgG~l~~~td~------~~~~~~~~~~l~~~ 364 (420)
.|++..+||+... +..++...+|++ .+.+.|+|||.++++.-. ......+.+.+.+.
T Consensus 179 vIi~D~~dp~~~~--~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v 242 (336)
T PLN02823 179 VIIGDLADPVEGG--PCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV 242 (336)
T ss_pred EEEecCCCccccC--cchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh
Confidence 9999888876221 123467789998 899999999999887422 33344455555553
No 155
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.91 E-value=2.6e-08 Score=91.54 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=80.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCC-eEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPG-KLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~-~~d~i 307 (420)
.+.++||++||+|.++++++.+.. ..++++|+++.+++.+++|++..++. +++++++|+...+.... ... .+|.|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~--~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA--KKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh--ccCCCceEE
Confidence 367899999999999999999854 48999999999999999999998886 69999999977654322 122 35555
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHH--hhccCCeEEEEEeCc
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI 350 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~--~~LkpgG~l~~~td~ 350 (420)
+. ||.+.... ....+..+. .+|+++|.+++++..
T Consensus 126 ~~---DPPy~~~~------~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 126 YL---DPPFFNGA------LQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EE---CcCCCCCc------HHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 44 55433211 124444443 479999999998753
No 156
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.89 E-value=1.7e-08 Score=90.96 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..+||||||+|.++..++++ ..+++++|+++.+++.+++++.. .+|++++++|+.++. + ++..+|.|+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~---~--~~~~~d~vi~ 83 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFD---L--PKLQPYKVVG 83 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCC---c--cccCCCEEEE
Confidence 3568999999999999999988 57899999999999999998753 468999999998762 1 3446898887
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhh--ccCCeEEEEEeC
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDL--LVHDGKVFLQSD 349 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~--LkpgG~l~~~td 349 (420)
+ .|+.. ..+++..+.+. +.++|.|+++.+
T Consensus 84 n--~Py~~---------~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 84 N--LPYNI---------STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred C--CCccc---------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 6 33311 12333333332 458899988753
No 157
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.88 E-value=3.9e-08 Score=99.05 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=90.5
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc---c---C-----
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA---S---Y----- 300 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~---~---~----- 300 (420)
..+||++||+|.+++.|++.. ..++|+|+++++++.|++|+..++++|++|+++|+.+++..... . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 469999999999999999885 48999999999999999999999999999999999987643210 0 0
Q ss_pred CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
...+|.|++ ||- ... +.+.+++.+.+ |++.+|+++|...++..+.... + +|....+
T Consensus 277 ~~~~d~v~l---DPP-R~G------~~~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~-~-~Y~l~~v 332 (353)
T TIGR02143 277 SYNCSTIFV---DPP-RAG------LDPDTCKLVQA---YERILYISCNPETLKANLEQLS-E-THRVERF 332 (353)
T ss_pred cCCCCEEEE---CCC-CCC------CcHHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHh-c-CcEEEEE
Confidence 113688776 553 122 12356665544 8999999998878777766544 2 2554443
No 158
>PHA03412 putative methyltransferase; Provisional
Probab=98.88 E-value=1.5e-08 Score=95.40 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=76.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhC---CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~---P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
+.+|||+|||+|.+++.++++. +..+++|+|+++.+++.|+++. .++.++++|+.... .+.+||.|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~------~~~~FDlI 118 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTE------FDTLFDMA 118 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhccc------ccCCccEE
Confidence 5789999999999999999874 4679999999999999999774 35889999997541 25689999
Q ss_pred EEeCCCCCCCCc--chhh----hhhHHHHHHHHHhhccCCeE
Q 014708 308 SIQCPNPDFNRP--EHRW----RMVQRSLVEAVSDLLVHDGK 343 (420)
Q Consensus 308 ~~~fpdp~~k~~--~~k~----Rl~~~~~l~~i~~~LkpgG~ 343 (420)
+.| .|+.+.. +... -++...+++.+.+++++|+.
T Consensus 119 IsN--PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 119 ISN--PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEC--CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 998 5554322 1111 23456799999997777665
No 159
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.87 E-value=2.9e-08 Score=94.78 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=87.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc--CCCeEe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~--~~~~~d 305 (420)
...+|||||+++|..++.+|+.. |+.+++.+|++++..+.|++++.+.|+. +++++.+|+.+.++..... ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 35789999999999999999885 5789999999999999999999999975 6999999999987654321 136899
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
.||+ |.+ |. .+..+++.+.+.|+|||.+++
T Consensus 159 ~iFi---Dad-K~-------~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFV---DAD-KD-------NYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEe---cCC-HH-------HhHHHHHHHHHhcCCCeEEEE
Confidence 9987 443 11 235888999999999999887
No 160
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.83 E-value=4.5e-08 Score=89.25 Aligned_cols=116 Identities=21% Similarity=0.303 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCe---------EEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhcc
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLN---------FLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVAS 299 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~---------viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~ 299 (420)
++..+||--||+|.++++.|...++.. ++|.|+++++++.|++|+...++.+ +.+.+.|+.++ + +
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-~--~-- 102 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-P--L-- 102 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-G--G--
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-c--c--
Confidence 367899999999999999988877776 9999999999999999999999864 89999999987 2 2
Q ss_pred CCCeEeEEEEeCCCCCCCCcc--hhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014708 300 YPGKLILVSIQCPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 353 (420)
Q Consensus 300 ~~~~~d~i~~~fpdp~~k~~~--~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~ 353 (420)
.++++|.|..+ .||=..-. ...+-+++++++++.++|++ ..+++.+....+
T Consensus 103 ~~~~~d~Ivtn--PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~ 155 (179)
T PF01170_consen 103 PDGSVDAIVTN--PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL 155 (179)
T ss_dssp TTSBSCEEEEE----STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH
T ss_pred ccCCCCEEEEC--cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH
Confidence 47799999998 56633211 12244568999999999999 555555555443
No 161
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=2.2e-08 Score=93.18 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=83.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-----CC-------------------------
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----IT------------------------- 280 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-----l~------------------------- 280 (420)
...+|||||-+|..++.+|+.+-...++|+||++..|+.|+++++..- ..
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 567999999999999999999988999999999999999999864210 11
Q ss_pred -----cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHH
Q 014708 281 -----NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVM 354 (420)
Q Consensus 281 -----nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~ 354 (420)
|+.|...+..---.+++......||.|.+.--.-|..-.|+..=+ .+|++.+++.|.|||+|+++- .|..|.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvEPQpWksY~ 216 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVEPQPWKSYK 216 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence 222222221110001111134678888766545553222222212 389999999999999999984 567775
Q ss_pred HH
Q 014708 355 LR 356 (420)
Q Consensus 355 ~~ 356 (420)
..
T Consensus 217 ka 218 (288)
T KOG2899|consen 217 KA 218 (288)
T ss_pred HH
Confidence 53
No 162
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=5.6e-09 Score=97.20 Aligned_cols=105 Identities=11% Similarity=0.211 Sum_probs=76.3
Q ss_pred EEEEEcCCccHHHHHHHHhCCC--CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh-hhhhhccCCCeEeEEEE
Q 014708 233 LVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-FRSIVASYPGKLILVSI 309 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~--~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~-~~~~~~~~~~~~d~i~~ 309 (420)
.|||||||.|+....+.+.+|+ ..++++|.|+.+++..+++..... +++.-.+.|+..- +...+ ..+++|.+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~--~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPP--EEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCC--CcCccceEEE
Confidence 7999999999999999999887 999999999999999988764332 4444445555432 11112 4688998866
Q ss_pred eCCC-CCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpd-p~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.|-- ..+..++ ...+..++++|||||.++++
T Consensus 151 IFvLSAi~pek~-------~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 151 IFVLSAIHPEKM-------QSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEEEeccChHHH-------HHHHHHHHHHhCCCcEEEEe
Confidence 5521 1111111 37889999999999999996
No 163
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.79 E-value=3.2e-08 Score=91.55 Aligned_cols=99 Identities=22% Similarity=0.326 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|+|+-||-|.|++.+|+..+...|+++|++|.+++..+++++.+++++ +..+++|+.++. ....+|.|.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------~~~~~drvi 174 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------PEGKFDRVI 174 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------CccccCEEE
Confidence 4789999999999999999997778899999999999999999999999876 899999998874 267899999
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
++.|.-- ..||..+.+++++||.+++
T Consensus 175 m~lp~~~------------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 175 MNLPESS------------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp E--TSSG------------GGGHHHHHHHEEEEEEEEE
T ss_pred ECChHHH------------HHHHHHHHHHhcCCcEEEC
Confidence 9854321 2799999999999999874
No 164
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.76 E-value=2e-07 Score=85.90 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=93.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..|||||||+|.++..+++. ....++|+|+|+++++.+++ .++.++++|+.+.++. + +++++|.|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~-~--~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEA-F--PDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccc-c--CCCCcCEEEE
Confidence 3578999999999999998876 45688999999999988854 2578899998753211 2 4678999988
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCC-
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE- 388 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~- 388 (420)
+.+-.|..+ + ..+++++.+.++ ..++...+..+.......+ ..+... ....-.| .|...
T Consensus 82 ~~~l~~~~d--~------~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~-~~~~~~-~~~~~~~-------~~~~~~ 141 (194)
T TIGR02081 82 SQTLQATRN--P------EEILDEMLRVGR---HAIVSFPNFGYWRVRWSIL-TKGRMP-VTGELPY-------DWYNTP 141 (194)
T ss_pred hhHhHcCcC--H------HHHHHHHHHhCC---eEEEEcCChhHHHHHHHHH-hCCccc-cCCCCCc-------cccCCC
Confidence 743222111 1 267777777655 4444444444433222222 222111 0100000 12211
Q ss_pred -CCCCCCCHHHHHHHHCCCCeEEEEEE
Q 014708 389 -NSFGVRSDWEQHVIDRGAPMYRLMLS 414 (420)
Q Consensus 389 -~~~~~~T~~E~~~~~~G~~i~~~~~~ 414 (420)
..+....++.+.+.+.|.++....+.
T Consensus 142 ~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 142 NIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred CcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 12345567788999999999876654
No 165
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.75 E-value=5.8e-08 Score=96.67 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-------CC---CcEEEEEcChhhh-hhhhhc
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-------GI---TNGYFIATNATST-FRSIVA 298 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-------~l---~nv~~~~~Da~~~-~~~~~~ 298 (420)
.+..|||+|||.|.-+....+.. -..++|+|++...|+.|+++..+. .. -...|+.+|.... +...++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 46899999999999999988764 468999999999999999998321 11 2477888888643 123332
Q ss_pred cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
.....||.|.+.|.-.+.-....+- +.+|+.+.+.|+|||+|+..|-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~a----r~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKA----RQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHH----HHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccCCCcceeehHHHHHHhcCCHHHH----HHHHHHHHHhcCCCCEEEEEecC
Confidence 1235999999987544322222221 47999999999999999998744
No 166
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.72 E-value=9.1e-08 Score=92.66 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|||||||+|.++..|+.+.| ..|+|+|-+.....+.+--.+-.|.++ +.++-.-++++ + ..+.||.|+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L-----p-~~~~FDtVF 187 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL-----P-NLGAFDTVF 187 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc-----c-ccCCcCEEE
Confidence 578999999999999999999864 479999999887766443323334333 33332344433 2 256899997
Q ss_pred EeC-----CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQC-----PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~f-----pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+.. .+|. ..|.++.+.|+|||.++++|
T Consensus 188 ~MGVLYHrr~Pl-------------~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 188 SMGVLYHRRSPL-------------DHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EeeehhccCCHH-------------HHHHHHHHhhCCCCEEEEEE
Confidence 642 3332 78999999999999999987
No 167
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.72 E-value=4.3e-08 Score=92.26 Aligned_cols=109 Identities=9% Similarity=0.026 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhH------------HhCCCcEEEEEcChhhhhhhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ------------LSGITNGYFIATNATSTFRSIV 297 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~------------~~~l~nv~~~~~Da~~~~~~~~ 297 (420)
.+.+||..|||.|.-+..||.+ +..|+|+|+|+.+++.+.+... ...-.+++++++|..++-..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-- 118 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-- 118 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--
Confidence 3579999999999999999998 7889999999999999866321 01124799999999887210
Q ss_pred ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+...+.||.|+-...-. .-++. ++.++.+.+.++|+|||.+++.+
T Consensus 119 ~~~~~~fD~VyDra~~~---Alpp~---~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYI---ALPND---LRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccCCcCeeeeehhHh---cCCHH---HHHHHHHHHHHHhCCCcEEEEEE
Confidence 00124688875321000 00011 23589999999999999988764
No 168
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.72 E-value=2.7e-07 Score=95.89 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=97.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|||+|||.|.=+.++|... ....+++.|+++..++..++++++.|+.|+.+.+.|+..+ ...+ +..||.|.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~~~---~~~fD~IL 188 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GAAL---PETFDAIL 188 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hhhc---hhhcCeEE
Confidence 46899999999999999999985 4569999999999999999999999999999999999876 2222 45799998
Q ss_pred EeCCCC----CCCCcchhh----------hhhHHHHHHHHHhhccCCeEEEEEeCc--HHHHHHHHH-HHHHcC
Q 014708 309 IQCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQSDI--EEVMLRMKQ-QFLEYG 365 (420)
Q Consensus 309 ~~fpdp----~~k~~~~k~----------Rl~~~~~l~~i~~~LkpgG~l~~~td~--~~~~~~~~~-~l~~~g 365 (420)
+.-|=. +.++...+. .-+|.++|+.+.+.|||||+++-.|.. +.--+.+.+ .+++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 763311 111111111 124589999999999999999888743 222334444 345554
No 169
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=2.5e-07 Score=87.65 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=109.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+.+|||-|+|+|.+.-.+|+. -|..+++-.|+.+...+.|++..+++++. |+++.+-|+... -|.-.+..+|.|
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~---GF~~ks~~aDaV 181 (314)
T KOG2915|consen 105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS---GFLIKSLKADAV 181 (314)
T ss_pred CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC---CccccccccceE
Confidence 4799999999999999999999 69999999999999999999999999975 899999999764 122136779999
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCe-EEEEEeCcHHHHHHHHHHHHHcCCceeEeecccc
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEC 376 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG-~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~ 376 (420)
++..|.|| ..+..++..||.+| +|+--|..-.+.+...+.+.++||..++.-++.+
T Consensus 182 FLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 182 FLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred EEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEeeh
Confidence 99999999 66777788999877 7766677777788889999999998766555533
No 170
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.71 E-value=1.3e-07 Score=96.13 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=86.0
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
.+|||++||+|.+++.+|+..+...|+++|+++.+++.+++|++.++++++.+.++|+..++.. ...||.|.+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~l-- 131 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDI-- 131 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEE--
Confidence 5899999999999999999877668999999999999999999999999999999999877421 356999987
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHH
Q 014708 312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEE 352 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~ 352 (420)
||. -. + ..++....+.+++||.+++. ||...
T Consensus 132 -DP~-Gs--~------~~~l~~al~~~~~~gilyvSAtD~~~ 163 (382)
T PRK04338 132 -DPF-GS--P------APFLDSAIRSVKRGGLLCVTATDTAP 163 (382)
T ss_pred -CCC-CC--c------HHHHHHHHHHhcCCCEEEEEecCchh
Confidence 453 11 1 27888878889999999996 45433
No 171
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.69 E-value=2e-07 Score=89.28 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=97.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC----CCcEEEEEcChhhhhhhhhccCCC-e
Q 014708 229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPG-K 303 (420)
Q Consensus 229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~----l~nv~~~~~Da~~~~~~~~~~~~~-~ 303 (420)
++...||=||-|.|..+..+.+..+-.+++.+|+++..++.|++...... -++++++.+|+..++.. ... .
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----TQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----SSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----ccCCc
Confidence 35789999999999999999877667899999999999999999765432 25799999999998754 244 8
Q ss_pred EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC----cHHHHHHHHHHHHHc
Q 014708 304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IEEVMLRMKQQFLEY 364 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td----~~~~~~~~~~~l~~~ 364 (420)
+|.|++..+||...... +...+|++.+.+.|+|||.+++... .+.....+.+.+++.
T Consensus 151 yDvIi~D~~dp~~~~~~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPN----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp EEEEEEESSSTTSCGGG----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred ccEEEEeCCCCCCCccc----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 99999988887532222 7778999999999999999999753 234445555666654
No 172
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.66 E-value=5.8e-07 Score=82.17 Aligned_cols=118 Identities=26% Similarity=0.335 Sum_probs=90.7
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 312 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp 312 (420)
.++|||+|.|.-++.||-.+|+.+|+.+|.+.+-+...+.-+.+.+++|+++++..+++. ....+||.|+.---
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------EYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT------TTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc------ccCCCccEEEeehh
Confidence 799999999999999999999999999999999999999999999999999999999882 14778999988643
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC--cHHHHHHHHHHHHHcCCce
Q 014708 313 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 313 dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td--~~~~~~~~~~~l~~~g~~~ 368 (420)
.|. ..+++.+...|++||.+++.-. +.+-.++....+...+...
T Consensus 125 ~~l------------~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 125 APL------------DKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp SSH------------HHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred cCH------------HHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 332 3788999999999999888653 2222333444555554443
No 173
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.65 E-value=1.2e-06 Score=88.65 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=91.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+.+||++-|=||.++++.|... ...++++|+|..+++.|++|++.+|+. .+.|+++|+.+++...-. ....||.|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cCCcccEE
Confidence 37889999999999999999872 339999999999999999999999974 489999999999765431 23589999
Q ss_pred EEeCCCCCCCCcchhhhh--hHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 308 SIQCPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl--~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
++. |+-.-+.+....+. .+..++..+.++|+|||.+++.|..
T Consensus 295 ilD-PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 295 ILD-PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEC-CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 884 22222222211111 2368899999999999999998854
No 174
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.63 E-value=4.2e-08 Score=91.42 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=66.6
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
...+|+|||+|..+..+|..+ .+|+|+|+|+.|++.|++.-...- ....++...+..+++ ..++|+|.|.+-
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-----g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-----GGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-----CCCcceeeehhh
Confidence 389999999997777777774 479999999999998876422110 011223333333331 148899999764
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCe-EEEEE
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQ 347 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG-~l~~~ 347 (420)
=.-.|+. .++|.+.++|+||+.| .+.+-
T Consensus 108 qa~HWFd---------le~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 108 QAVHWFD---------LERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hhHHhhc---------hHHHHHHHHHHcCCCCCEEEEE
Confidence 2233322 2589999999999877 55543
No 175
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=6.6e-07 Score=92.08 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=94.5
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.+++|+=||.|.|++.||++ ..+|+|+|+++++++.|++|++.+++.|++|..+|+.++...+- ....+|.|++
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~Vvv- 368 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVVV- 368 (432)
T ss_pred CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEEE-
Confidence 578999999999999999976 67899999999999999999999999999999999999864332 2346799977
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~ 369 (420)
||--+- ..+++++.+. .++|-..+|+.++-..+...+ ..|.+.++...
T Consensus 369 --DPPR~G-------~~~~~lk~l~-~~~p~~IvYVSCNP~TlaRDl-~~L~~~gy~i~ 416 (432)
T COG2265 369 --DPPRAG-------ADREVLKQLA-KLKPKRIVYVSCNPATLARDL-AILASTGYEIE 416 (432)
T ss_pred --CCCCCC-------CCHHHHHHHH-hcCCCcEEEEeCCHHHHHHHH-HHHHhCCeEEE
Confidence 553222 1236666665 468888999987666655544 45666666443
No 176
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.58 E-value=7.5e-07 Score=86.63 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=98.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC----CCcEEEEEcChhhhhhhhhccCCCe
Q 014708 228 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGK 303 (420)
Q Consensus 228 ~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~----l~nv~~~~~Da~~~~~~~~~~~~~~ 303 (420)
+++..+||-||-|.|..+..+.+..+-.+++.+||++..++.|++...... -+++.++..|+.+++.+. +..
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~----~~~ 149 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC----EEK 149 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC----CCc
Confidence 334469999999999999999999888999999999999999999875543 367999999999987542 448
Q ss_pred EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHH
Q 014708 304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 354 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~ 354 (420)
||.|++...||- .+...|++.+|.+.+.+.|+++|.+..++..+.+.
T Consensus 150 fDvIi~D~tdp~----gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 150 FDVIIVDSTDPV----GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred CCEEEEcCCCCC----CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 999999877772 24446788999999999999999999997654443
No 177
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.2e-07 Score=95.02 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=88.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..++|+.||||.+.+++|+. -..|+|||++++++.-|++|+..+|++|++|+++-++++++..+...-.+=+.+.+
T Consensus 383 ~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~i 460 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAI 460 (534)
T ss_pred CCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEE
Confidence 4689999999999999999987 57899999999999999999999999999999999988876554311122344444
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHH
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 361 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l 361 (420)
. ||--+.-|. .++..+.+.-.+-=.+++....+..+..+.+.+
T Consensus 461 i--DPpR~Glh~-------~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc 503 (534)
T KOG2187|consen 461 I--DPPRKGLHM-------KVIKALRAYKNPRRLVYVSCNPHTAARNVIDLC 503 (534)
T ss_pred E--CCCcccccH-------HHHHHHHhccCccceEEEEcCHHHhhhhHHHhh
Confidence 4 664344343 677777776667767777654433333444443
No 178
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.58 E-value=5.5e-07 Score=82.38 Aligned_cols=112 Identities=18% Similarity=0.236 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.++||+-||||.++++.+.+. ...++.+|.++.++...++|++..+..+ +++++.|+...+..... ....||.|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-KGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH-CTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc-cCCCceEEE
Confidence 47899999999999999977763 4689999999999999999999999876 99999999887654321 367899997
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHH--hhccCCeEEEEEeCcH
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDIE 351 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~--~~LkpgG~l~~~td~~ 351 (420)
+. .|+ .... ....+++.+. .+|+++|.++++++..
T Consensus 120 lD--PPY-~~~~-----~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 120 LD--PPY-AKGL-----YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp E----ST-TSCH-----HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EC--CCc-ccch-----HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 74 333 2221 1246777776 8999999999998543
No 179
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.57 E-value=3.7e-07 Score=88.35 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-CC-----CcEEEEEcChhhh-hhhhhccCCC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GI-----TNGYFIATNATST-FRSIVASYPG 302 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-~l-----~nv~~~~~Da~~~-~~~~~~~~~~ 302 (420)
....++|+|||.|.-++..-+.- =..++|+||++-.|+.|+++...- +. -.+.|+++|...- +.+.+++.+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35678999999999999887663 347999999999999999987542 11 1378999998754 2334443455
Q ss_pred eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014708 303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 353 (420)
Q Consensus 303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~ 353 (420)
+||.|.+.|.-.+.-....+. +.+|+.+.++|+|||+|+-.+.+.+.
T Consensus 196 ~fDivScQF~~HYaFetee~a----r~~l~Nva~~LkpGG~FIgTiPdsd~ 242 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESA----RIALRNVAKCLKPGGVFIGTIPDSDV 242 (389)
T ss_pred CcceeeeeeeEeeeeccHHHH----HHHHHHHHhhcCCCcEEEEecCcHHH
Confidence 599998776544322222222 25789999999999999887655443
No 180
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.57 E-value=1.7e-07 Score=83.81 Aligned_cols=77 Identities=10% Similarity=0.074 Sum_probs=59.6
Q ss_pred EEEeCChHHHHHHHHHhHHhC---CCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHH
Q 014708 258 LGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 334 (420)
Q Consensus 258 iGiDis~~~i~~A~~~~~~~~---l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i 334 (420)
+|+|+|++|++.|+++....+ ..|++|+++|+.++ +.++++||.|++.+.-.+..++ .++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~v~~~~~l~~~~d~--------~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-----PFDDCEFDAVTMGYGLRNVVDR--------LRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-----CCCCCCeeEEEecchhhcCCCH--------HHHHHHH
Confidence 489999999999988765322 35799999999886 2357799999887644332211 3799999
Q ss_pred HhhccCCeEEEEE
Q 014708 335 SDLLVHDGKVFLQ 347 (420)
Q Consensus 335 ~~~LkpgG~l~~~ 347 (420)
+++|||||.|++.
T Consensus 68 ~rvLkpGG~l~i~ 80 (160)
T PLN02232 68 YRVLKPGSRVSIL 80 (160)
T ss_pred HHHcCcCeEEEEE
Confidence 9999999999874
No 181
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.55 E-value=4.4e-08 Score=92.02 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH------------hCCCcEEEEEcChhhhhhhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIV 297 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~------------~~l~nv~~~~~Da~~~~~~~~ 297 (420)
.+.+||..|||.|.-+..||++ +.+|+|+|+|+.+++.+.+.... ....+++++++|..++.+.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~-- 112 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE-- 112 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS--
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh--
Confidence 4568999999999999999998 68999999999999998554221 1234689999999987321
Q ss_pred ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
..+.||.|+=.-.-. .-++. .++++.+.+.++|+|||.+++.|
T Consensus 113 --~~g~fD~iyDr~~l~---Alpp~---~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 113 --DVGKFDLIYDRTFLC---ALPPE---MRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp --CHHSEEEEEECSSTT---TS-GG---GHHHHHHHHHHCEEEEEEEEEEE
T ss_pred --hcCCceEEEEecccc---cCCHH---HHHHHHHHHHHHhCCCCcEEEEE
Confidence 124799997331000 00122 23589999999999999955543
No 182
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.55 E-value=1.1e-06 Score=84.38 Aligned_cols=123 Identities=16% Similarity=0.173 Sum_probs=95.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCC--CeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~--~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~ 306 (420)
...+||||.||.|...+.....+|. ..+.-.|.|+..++..++.+++.|++++ +|.++||.+.. .+-. .+...+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~-l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAA-LDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhhc-cCCCCCE
Confidence 4578999999999999999999997 7999999999999999999999999996 99999998862 2211 1222344
Q ss_pred EE-----EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHHHHc
Q 014708 307 VS-----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEY 364 (420)
Q Consensus 307 i~-----~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l~~~ 364 (420)
++ =+|||- .++ .+.+..++++|.|||+++... .|+++.+.+...|.+|
T Consensus 213 ~iVsGL~ElF~Dn---------~lv-~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH 266 (311)
T PF12147_consen 213 AIVSGLYELFPDN---------DLV-RRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH 266 (311)
T ss_pred EEEecchhhCCcH---------HHH-HHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc
Confidence 33 345553 123 367889999999999997742 4788888888888776
No 183
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.55 E-value=9.4e-07 Score=86.07 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+.+|||+-|=+|.|++..+.. ....++.+|.|..+++.|++|+..++++ +++|++.|+.+++...- ..+.||.|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~--~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK--KGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH--HTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh--cCCCCCEE
Confidence 4789999999999999987764 3457999999999999999999999864 79999999998865432 25689999
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
++. |..+-|.+....| -+.+++..+.++|+|||.+++.|..
T Consensus 200 IlD-PPsF~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 200 ILD-PPSFAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EE---SSEESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EEC-CCCCCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 885 3333222221112 2357899999999999999988754
No 184
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.52 E-value=4.2e-07 Score=84.37 Aligned_cols=131 Identities=10% Similarity=0.102 Sum_probs=100.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC--CcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l--~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+.+|||.|.|-|.+++..+++- ..+|+-+|.++..++.|.-|--..++ .++.++.+|+.+..++ | .+.+||.|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~--~D~sfDaI 209 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-F--DDESFDAI 209 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-C--CccccceE
Confidence 47899999999999999988872 33999999999999998766443443 2589999999998654 3 58899998
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH-------HHHHHHHHHHHcCCcee
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-------VMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~-------~~~~~~~~l~~~g~~~~ 369 (420)
.- ||- ...+.-+|.+.+|-++++|+|||||.++-.+.++. ....+.+.|++.||..+
T Consensus 210 iH---DPP--RfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 210 IH---DPP--RFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred ee---CCC--ccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence 44 442 11122367889999999999999999988775433 45568888889888743
No 185
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.52 E-value=6.1e-07 Score=85.37 Aligned_cols=96 Identities=15% Similarity=0.254 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
....+||||+|+|.++..+++++|+.+++..|. |..++.+++ ..+++++.+|..+- + +. .|.+++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~----~---P~-~D~~~l 164 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP----L---PV-ADVYLL 164 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC----C---SS-ESEEEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhh----h---cc-ccceee
Confidence 357899999999999999999999999999998 888888877 56899999999732 2 33 898876
Q ss_pred eC-CCCCCCCcchhhhhhHHHHHHHHHhhccCC--eEEEEE
Q 014708 310 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHD--GKVFLQ 347 (420)
Q Consensus 310 ~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg--G~l~~~ 347 (420)
.. -.-|+. . ....+|+.+++.|+|| |+|++.
T Consensus 165 ~~vLh~~~d---~----~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 165 RHVLHDWSD---E----DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp ESSGGGS-H---H----HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ehhhhhcch---H----HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 52 122211 1 1247999999999999 999885
No 186
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.52 E-value=1e-06 Score=85.70 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++..|||||||+|.++..++++.+ +++|+|+++.+++.++++... .|+.++++|+.++. + ++...+.|+.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~---~--~~~~~~~vv~ 111 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVD---L--SELQPLKVVA 111 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCC---H--HHcCcceEEE
Confidence 457899999999999999999964 899999999999999887642 68999999998762 1 1111477777
Q ss_pred e
Q 014708 310 Q 310 (420)
Q Consensus 310 ~ 310 (420)
|
T Consensus 112 N 112 (272)
T PRK00274 112 N 112 (272)
T ss_pred e
Confidence 7
No 187
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.51 E-value=4.2e-07 Score=89.20 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..|||||||+|.++..+++. ..+++|+|+++.+++.+++++...+ ..|++++++|+.... ...+|.|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-------~~~~d~Vv 106 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-------FPYFDVCV 106 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-------ccccCEEE
Confidence 4678999999999999999987 4579999999999999999987766 568999999998751 23578888
Q ss_pred EeCC
Q 014708 309 IQCP 312 (420)
Q Consensus 309 ~~fp 312 (420)
.+.|
T Consensus 107 aNlP 110 (294)
T PTZ00338 107 ANVP 110 (294)
T ss_pred ecCC
Confidence 8743
No 188
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.51 E-value=3.7e-07 Score=81.55 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=57.0
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
.|+|+.||.|..++.+|+.+ .+|+++|+++..++.|+.|++-.|.. |+.|+++|..+++...- ....+|.|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~--~~~~~D~vFlS- 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK--SNKIFDVVFLS- 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB--------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc--ccccccEEEEC-
Confidence 68999999999999999995 57999999999999999999999964 89999999999854321 11227999776
Q ss_pred CCCC
Q 014708 312 PNPD 315 (420)
Q Consensus 312 pdp~ 315 (420)
.||
T Consensus 77 -PPW 79 (163)
T PF09445_consen 77 -PPW 79 (163)
T ss_dssp ---B
T ss_pred -CCC
Confidence 777
No 189
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.50 E-value=1.3e-06 Score=88.50 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=88.0
Q ss_pred CEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 232 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
..+||..||+|..++.++++.+ -..|+++|+++.+++.+++|++.+++.|+.+.+.|+..++.. ....||.|++
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----~~~~fDvIdl- 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----RNRKFHVIDI- 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----hCCCCCEEEe-
Confidence 5899999999999999999854 358999999999999999999999988999999999988642 1356998877
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHHH
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV 353 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~~ 353 (420)
||. ... ..|+..+.+.+++||.+++. ||...+
T Consensus 121 --DPf-Gs~--------~~fld~al~~~~~~glL~vTaTD~~~L 153 (374)
T TIGR00308 121 --DPF-GTP--------APFVDSAIQASAERGLLLVTATDTSAL 153 (374)
T ss_pred --CCC-CCc--------HHHHHHHHHhcccCCEEEEEecccHHh
Confidence 663 211 27999999999999999986 665443
No 190
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.49 E-value=4.6e-07 Score=87.36 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++..|||||||+|.++..++++ ..+++|+|+++.+++.+++++.. ..|+.++++|+.++. -..+|.|+.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~-------~~~~d~Vv~ 97 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD-------LPEFNKVVS 97 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC-------chhceEEEE
Confidence 4678999999999999999998 45899999999999999988754 468999999998751 224788888
Q ss_pred eC
Q 014708 310 QC 311 (420)
Q Consensus 310 ~f 311 (420)
|.
T Consensus 98 Nl 99 (258)
T PRK14896 98 NL 99 (258)
T ss_pred cC
Confidence 73
No 191
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.48 E-value=1e-06 Score=87.03 Aligned_cols=126 Identities=17% Similarity=0.235 Sum_probs=96.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..+||==||||.++++..-. +++++|.|++..|++-|+.|++..++....++.. ||..+ + + ++.++|.|.
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-p--l--~~~~vdaIa 269 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-P--L--RDNSVDAIA 269 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-C--C--CCCccceEE
Confidence 3679999999999999998877 8999999999999999999999999888877777 99887 2 3 466799997
Q ss_pred EeCCCCCCCCc----chhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 309 IQCPNPDFNRP----EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 309 ~~fpdp~~k~~----~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
.. .|+=... ..-.+| ..++|+.++++||+||++.|.++.. ....+...+|....
T Consensus 270 tD--PPYGrst~~~~~~l~~L-y~~~le~~~evLk~gG~~vf~~p~~-----~~~~~~~~~f~v~~ 327 (347)
T COG1041 270 TD--PPYGRSTKIKGEGLDEL-YEEALESASEVLKPGGRIVFAAPRD-----PRHELEELGFKVLG 327 (347)
T ss_pred ec--CCCCcccccccccHHHH-HHHHHHHHHHHhhcCcEEEEecCCc-----chhhHhhcCceEEE
Confidence 74 2321111 111123 4699999999999999999998732 23345566666543
No 192
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=3.3e-06 Score=85.09 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=90.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCC--CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~--~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
++.+|||++.+.|.=+.++|+..++ ..|+++|+|+..+...++++.+.|+.|+..++.|+..+..... ....||.|
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~--~~~~fD~i 233 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP--GGEKFDRI 233 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc--ccCcCcEE
Confidence 4789999999999999999999654 5679999999999999999999999999999999987632211 12359999
Q ss_pred EEeCC---------CCCCCCcchhh-----hhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 308 SIQCP---------NPDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 308 ~~~fp---------dp~~k~~~~k~-----Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
.+.-| +|-.+...... .-+|.++|....+.|||||.++..|.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 76522 22111111111 12568999999999999999999874
No 193
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.42 E-value=8.2e-07 Score=81.85 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=80.6
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhh---ccCCCeEeEE
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIV---ASYPGKLILV 307 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~---~~~~~~~d~i 307 (420)
..|||||||||.++..+|+++|...+.-.|..+......+..+...+++|+ .-+..|+..-...+. +....++|.|
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 369999999999999999999999999999999998888888888888884 345566655311110 0124579998
Q ss_pred EEe---CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 308 SIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 308 ~~~---fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+.. .--|| -.-..+++.+.+.|++||.|++.
T Consensus 107 ~~~N~lHI~p~---------~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 107 FCINMLHISPW---------SAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred eehhHHHhcCH---------HHHHHHHHHHHHhCCCCCEEEEe
Confidence 643 12344 12258999999999999999985
No 194
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.42 E-value=1.7e-06 Score=78.36 Aligned_cols=108 Identities=18% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC---CCcEEEEEcChhhhh-hhhhccCCCeEe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTF-RSIVASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~---l~nv~~~~~Da~~~~-~~~~~~~~~~~d 305 (420)
.+.+|||+|||+|..++.+|+..+...|+..|.++ .+...+.|++.++ ..++.+...|..+-. .+.+ .+..||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSBS
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccCC
Confidence 46899999999999999999987788999999999 9999999998776 346888887765422 2223 356899
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.|+.. |-..... ..+.+++.+.+.|+|+|.+++..
T Consensus 122 ~Ilas--Dv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILAS--DVLYDEE------LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEE--S--S-GG------GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEe--cccchHH------HHHHHHHHHHHHhCCCCEEEEEe
Confidence 99765 5543322 23689999999999999977764
No 195
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.40 E-value=2.5e-06 Score=86.01 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=78.6
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhh-----h------ccC
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSI-----V------ASY 300 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~-----~------~~~ 300 (420)
..+||+-||.|.+++.||+.. ..|+|+|+++.+++.|++|+..+++.|++|+++++.++...+ + ...
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 379999999999999999984 689999999999999999999999999999999987652211 0 001
Q ss_pred CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
...+|.|.+ ||--+.- .+.+++.+. ++.=.+|+.+|...+...+.. |.+ +|....
T Consensus 276 ~~~~d~vil---DPPR~G~-------~~~~~~~~~---~~~~ivYvSCnP~tlaRDl~~-L~~-~y~~~~ 330 (352)
T PF05958_consen 276 SFKFDAVIL---DPPRAGL-------DEKVIELIK---KLKRIVYVSCNPATLARDLKI-LKE-GYKLEK 330 (352)
T ss_dssp CTTESEEEE------TT-S-------CHHHHHHHH---HSSEEEEEES-HHHHHHHHHH-HHC-CEEEEE
T ss_pred hcCCCEEEE---cCCCCCc-------hHHHHHHHh---cCCeEEEEECCHHHHHHHHHH-Hhh-cCEEEE
Confidence 235788866 5632221 235555553 345678888777776666654 443 666543
No 196
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.38 E-value=3.4e-06 Score=81.08 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
++..|||||||+|.++..|+++.+ .++++|+++.+++.+++++.. .+|+.++++|+...
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence 467899999999999999999975 599999999999999887643 46899999999876
No 197
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.29 E-value=1.6e-05 Score=72.35 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.++||+=+|||..+++.+.+. ...++.+|.+..++...++|++..++ .+++++..|+..+++..- ..++||.||
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~--~~~~FDlVf 119 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG--TREPFDLVF 119 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC--CCCcccEEE
Confidence 57999999999999999988874 56899999999999999999998885 479999999997654321 123599997
Q ss_pred EeCCCCCCCCcchhhhhhH-HHHHH--HHHhhccCCeEEEEEeCcH
Q 014708 309 IQCPNPDFNRPEHRWRMVQ-RSLVE--AVSDLLVHDGKVFLQSDIE 351 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~-~~~l~--~i~~~LkpgG~l~~~td~~ 351 (420)
+ ||-+.+. +.. ..-+. .-..+|+|+|.++++++..
T Consensus 120 l---DPPy~~~-----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 L---DPPYAKG-----LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred e---CCCCccc-----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 7 5543322 111 01112 2457899999999998754
No 198
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.28 E-value=1.3e-05 Score=78.38 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=91.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..|||++++.|.=+.++|+..+ ...+++.|+++..+...++++++.|..|+...+.|+....+... ...||.|.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~Vl 161 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDRVL 161 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccchhh
Confidence 467899999999999999999965 77999999999999999999999999999999999988743332 44699998
Q ss_pred EeCCCCC----CCCcchhhh----------hhHHHHHHHHHhhc----cCCeEEEEEeC
Q 014708 309 IQCPNPD----FNRPEHRWR----------MVQRSLVEAVSDLL----VHDGKVFLQSD 349 (420)
Q Consensus 309 ~~fpdp~----~k~~~~k~R----------l~~~~~l~~i~~~L----kpgG~l~~~td 349 (420)
+.-|=.. -++.+.+.+ -+|.++|+.+.+.+ ||||+++..|-
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 8633111 111111111 14689999999999 99999999884
No 199
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.28 E-value=7.5e-06 Score=72.48 Aligned_cols=128 Identities=17% Similarity=0.175 Sum_probs=91.2
Q ss_pred ccCCCccccccCCccccccccccCCCCCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcE
Q 014708 204 RMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNG 282 (420)
Q Consensus 204 ~~lPgv~aL~~~~p~~~~~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv 282 (420)
-.+|....+.+.+...++|. .+--|||+|.|+|-++-++.++ .++..++.||.|++.+....+.. +.+
T Consensus 28 aI~PsSs~lA~~M~s~I~pe------sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~ 96 (194)
T COG3963 28 AILPSSSILARKMASVIDPE------SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGV 96 (194)
T ss_pred eecCCcHHHHHHHHhccCcc------cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCc
Confidence 45676655555544455663 3556999999999999998776 88899999999999998776653 456
Q ss_pred EEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 283 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 283 ~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.++.+|+.++-...-......||.|++..|--- --.++|+ ++|+.+...|.+||.++--|
T Consensus 97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~---~P~~~~i---aile~~~~rl~~gg~lvqft 156 (194)
T COG3963 97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLN---FPMHRRI---AILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccccchhhHHHHHhhcCCCeeeeEEecccccc---CcHHHHH---HHHHHHHHhcCCCCeEEEEE
Confidence 799999998731111124678999976533211 1122333 88999999999999988655
No 200
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=1.6e-05 Score=74.10 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=88.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhcc-CCCeEeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~-~~~~~d~ 306 (420)
.+.++||||.=+|..++..|...| +..|+++|++++..+.+.+.....|.. .++++++++.+.+++.++. ..++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 368899999999999999999976 469999999999999999988888876 5999999999998877642 3578998
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
+|+ |.| |++- -.+.+++.+.||+||.+++
T Consensus 153 aFv---Dad------K~nY--~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 153 AFV---DAD------KDNY--SNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EEE---ccc------hHHH--HHHHHHHHhhcccccEEEE
Confidence 877 555 2222 2788999999999999988
No 201
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.26 E-value=3.6e-07 Score=84.56 Aligned_cols=122 Identities=11% Similarity=0.168 Sum_probs=82.5
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
.++||+|||||..+..|-.. -.+.+|+|||+.|+++|.++-. .. ++.++|+..+++. +.+..+|.|..--
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~---YD--~L~~Aea~~Fl~~---~~~er~DLi~AaD 196 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL---YD--TLYVAEAVLFLED---LTQERFDLIVAAD 196 (287)
T ss_pred ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc---hH--HHHHHHHHHHhhh---ccCCcccchhhhh
Confidence 57999999999999887666 3468999999999999977521 11 3456666655431 1467789886541
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC----cH--------HH---HHHHHHHHHHcCCceeEe
Q 014708 312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IE--------EV---MLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td----~~--------~~---~~~~~~~l~~~g~~~~~~ 371 (420)
.-|+.-. + ..++..+...|+|||.|.|++. +. .| -.++...++..|+..+.+
T Consensus 197 Vl~YlG~------L--e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 197 VLPYLGA------L--EGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred HHHhhcc------h--hhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 1121111 0 4788899999999999999752 11 11 124677777888776654
No 202
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=1.6e-05 Score=79.09 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=86.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||.=+|-|-|++.+|+.-.-. |+++|++|.+++..++|+..+++.+ +..+++|+...... ...+|.|+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-----~~~aDrIi 261 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-----LGVADRII 261 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc-----cccCCEEE
Confidence 48999999999999999999984333 9999999999999999999999988 99999999988421 26799999
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
++.|.-- ..|+..+.+.+++||.+++..
T Consensus 262 m~~p~~a------------~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 262 MGLPKSA------------HEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred eCCCCcc------------hhhHHHHHHHhhcCcEEEEEe
Confidence 9865421 279999999999999999875
No 203
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=1e-05 Score=75.54 Aligned_cols=121 Identities=22% Similarity=0.183 Sum_probs=93.9
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCe-EeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGK-LILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~-~d~i~~ 309 (420)
+.+++|||+|.|.-++.||-.+|+.+|+-+|...+.+...+.-..+.+++|++++++.++++-+ +.. +|.|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~------~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ------EKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc------ccccCcEEEe
Confidence 4789999999999999999999999999999999999999999999999999999999998731 223 899977
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE--eCcHHHHHHHHHHHHHcCCcee
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~--td~~~~~~~~~~~l~~~g~~~~ 369 (420)
---.+. ..+++-+...||+||.+... .-..++..+........++...
T Consensus 142 RAva~L------------~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~ 191 (215)
T COG0357 142 RAVASL------------NVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVE 191 (215)
T ss_pred ehccch------------HHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEE
Confidence 422221 36778888999999987432 1234455556666666665543
No 204
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.22 E-value=4.9e-06 Score=81.50 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..+||.+||.|.++..+++..| +..|+|+|.++.+++.|++++.+ ..++.++++|..++. ..++..-.++|.|+
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~-~~l~~~~~~vDgIl 95 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLK-EVLAEGLGKVDGIL 95 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHH-HHHHcCCCccCEEE
Confidence 356999999999999999999985 78999999999999999998765 568999999999883 33321012688886
Q ss_pred Ee
Q 014708 309 IQ 310 (420)
Q Consensus 309 ~~ 310 (420)
+.
T Consensus 96 ~D 97 (296)
T PRK00050 96 LD 97 (296)
T ss_pred EC
Confidence 43
No 205
>PRK04148 hypothetical protein; Provisional
Probab=98.22 E-value=6.4e-06 Score=71.11 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCccH-HHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGL-FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~-~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.++||||||+|. ++..|++. +..|+++|+++.+++.++++ .+.++++|..+-..++ -..+|.|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~----y~~a~liy 82 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEI----YKNAKLIY 82 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHH----HhcCCEEE
Confidence 45789999999996 78888876 68999999999998888665 2578899997642222 24589999
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
..-|.|. +++.+++ +++.+ |.-+++.+
T Consensus 83 sirpp~e----------l~~~~~~-la~~~--~~~~~i~~ 109 (134)
T PRK04148 83 SIRPPRD----------LQPFILE-LAKKI--NVPLIIKP 109 (134)
T ss_pred EeCCCHH----------HHHHHHH-HHHHc--CCCEEEEc
Confidence 9877663 3334443 44433 55566664
No 206
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=3.3e-06 Score=72.99 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 226 f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
+++-++..++|+|||.|-..+..+ .+....++|+||.+++++.+++|+++..+ |+.++|+|..+.. + ..+.||
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle---~--~~g~fD 116 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLE---L--KGGIFD 116 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchh---c--cCCeEe
Confidence 343467899999999999985443 23456899999999999999999998887 4689999998763 2 357899
Q ss_pred EEEEe
Q 014708 306 LVSIQ 310 (420)
Q Consensus 306 ~i~~~ 310 (420)
...++
T Consensus 117 taviN 121 (185)
T KOG3420|consen 117 TAVIN 121 (185)
T ss_pred eEEec
Confidence 99887
No 207
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.20 E-value=1.7e-05 Score=78.53 Aligned_cols=115 Identities=10% Similarity=0.113 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC----CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEE--EEcChhhhhhhhhccC--C
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR----KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF--IATNATSTFRSIVASY--P 301 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~----P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~--~~~Da~~~~~~~~~~~--~ 301 (420)
++..++|+|||+|.=+..|.+.. ....|+++|||.++++.+.+++.....+++.+ +++|..+.+ .+++.+ .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l-~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL-AWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH-hhccccccc
Confidence 35689999999999877766553 35789999999999999999987556666655 888887763 233211 1
Q ss_pred CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHh-hccCCeEEEEEeCc
Q 014708 302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSDI 350 (420)
Q Consensus 302 ~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~-~LkpgG~l~~~td~ 350 (420)
.....+++. ---.-+..+. -..+||+.+++ .|+|||.|++-.|-
T Consensus 155 ~~~r~~~fl--GSsiGNf~~~---ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 155 SRPTTILWL--GSSIGNFSRP---EAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred CCccEEEEe--CccccCCCHH---HHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 222333322 1111111111 12389999999 99999999997764
No 208
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.18 E-value=2.5e-05 Score=74.23 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=83.2
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
...+||||.|.|..+..|+..+. +|++.|+|+.|..+.++ .|. +.+ |..++ .+ .+..||.|.++
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----kg~---~vl--~~~~w-~~----~~~~fDvIscL 158 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----KGF---TVL--DIDDW-QQ----TDFKFDVISCL 158 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----CCC---eEE--ehhhh-hc----cCCceEEEeeh
Confidence 46799999999999999999875 49999999999655443 444 222 33333 11 35689999765
Q ss_pred -CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-----------C----------------cHHHHHHHHHHHH
Q 014708 311 -CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----------D----------------IEEVMLRMKQQFL 362 (420)
Q Consensus 311 -fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-----------d----------------~~~~~~~~~~~l~ 362 (420)
--|-..+ | ..+|+++++.|+|+|.++++. . ++++...+.++++
T Consensus 159 NvLDRc~~---P------~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~ 229 (265)
T PF05219_consen 159 NVLDRCDR---P------LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFE 229 (265)
T ss_pred hhhhccCC---H------HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHH
Confidence 2222100 1 279999999999999998852 1 2344555668888
Q ss_pred HcCCceeEeecccc
Q 014708 363 EYGKGKLVLVQDEC 376 (420)
Q Consensus 363 ~~g~~~~~~~~D~~ 376 (420)
..||.....+.-+|
T Consensus 230 p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 230 PAGFEVERWTRLPY 243 (265)
T ss_pred hcCCEEEEEeccCc
Confidence 88888766555555
No 209
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.18 E-value=3.8e-05 Score=71.47 Aligned_cols=119 Identities=13% Similarity=0.229 Sum_probs=87.0
Q ss_pred EEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014708 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCP 312 (420)
Q Consensus 234 vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp 312 (420)
|.||||-.|...+.|.++.....++++|+++..++.|++++.+.++.+ +.+..+|....++ +.+.+|.|.+-..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-----~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-----PGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-------GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-----CCCCCCEEEEecC
Confidence 689999999999999999888899999999999999999999999764 9999999877542 1233788876521
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014708 313 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 313 dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~ 369 (420)
.-.++ .++|+.....++..-.|+++.... ...+++.+.++||...
T Consensus 76 ---------GG~lI-~~ILe~~~~~~~~~~~lILqP~~~--~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 76 ---------GGELI-IEILEAGPEKLSSAKRLILQPNTH--AYELRRWLYENGFEII 120 (205)
T ss_dssp ----------HHHH-HHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTTEEEE
T ss_pred ---------CHHHH-HHHHHhhHHHhccCCeEEEeCCCC--hHHHHHHHHHCCCEEE
Confidence 11222 378888888887777899987543 3468999999999764
No 210
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.16 E-value=8.4e-06 Score=80.26 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=77.5
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+.+|||+|||+|.+.+--|+.. ..+|+|+|-|.-+ +.|++.+..+++++ ++++++.+.++. + |.+.+|.|..
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~---L--P~eKVDiIvS 133 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE---L--PVEKVDIIVS 133 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe---c--CccceeEEee
Confidence 6899999999999999888886 6799999988766 99999999999988 999999998872 3 3578999865
Q ss_pred eCCCCCCCCcchhhhhhH----HHHHHHHHhhccCCeEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQ----RSLVEAVSDLLVHDGKVF 345 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~----~~~l~~i~~~LkpgG~l~ 345 (420)
-+.--| ++. ...|-.--++|+|||.++
T Consensus 134 EWMGy~---------Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYF---------LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHH---------HHHhhhhhhhhhhhhhccCCCceEc
Confidence 432221 222 245555678999999864
No 211
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.15 E-value=1.1e-05 Score=76.38 Aligned_cols=146 Identities=14% Similarity=0.052 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHH-HHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTH-CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~-A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++..+||+|||+|.++..+++. +...++|+|+++.++.. .+++.. -+.+...|+.....+.+...-..+|..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~-----v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDER-----VKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCC-----eeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 4678999999999999999987 45789999999988865 222211 0112233333221111110113678776
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCC
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGE 388 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~ 388 (420)
+.. ...+..+.+.|+| |.+++-. .+++|--.+.....|. +.+.. .|
T Consensus 149 iS~----------------~~~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~gi----v~~~~----~~------- 194 (228)
T TIGR00478 149 ISL----------------ISILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGV----VRDKE----AI------- 194 (228)
T ss_pred eeh----------------HhHHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCe----ecCHH----HH-------
Confidence 651 1367888999999 7776543 4555544433333331 11110 11
Q ss_pred CCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014708 389 NSFGVRSDWEQHVIDRGAPMYRLMLSKPS 417 (420)
Q Consensus 389 ~~~~~~T~~E~~~~~~G~~i~~~~~~k~~ 417 (420)
.....++.....+.|..+..+....+.
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~s~i~ 221 (228)
T TIGR00478 195 --ALALHKVIDKGESPDFQEKKIIFSLTK 221 (228)
T ss_pred --HHHHHHHHHHHHcCCCeEeeEEECCCC
Confidence 123344555556667777666665554
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.13 E-value=3.7e-05 Score=84.27 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=83.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhC------------------------------------------CCCeEEEEeCChHHHH
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR------------------------------------------KDLNFLGLEVNGKLVT 268 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~------------------------------------------P~~~viGiDis~~~i~ 268 (420)
+..++|-.||+|.++++.|... +...++|+|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 5789999999999999987631 1236999999999999
Q ss_pred HHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcc--hhhhhhHHHHHHHHHhhccCCeEEE
Q 014708 269 HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVF 345 (420)
Q Consensus 269 ~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~--~k~Rl~~~~~l~~i~~~LkpgG~l~ 345 (420)
.|++|+..+|+.+ +.|.++|+.++.. +...+++|.|..| .|+-..-. ...+-++..+-+ ..+.+.+|+.++
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~---~~~~~~~d~IvtN--PPYg~r~~~~~~l~~lY~~lg~-~lk~~~~g~~~~ 344 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKN---PLPKGPTGLVISN--PPYGERLGEEPALIALYSQLGR-RLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhccc---ccccCCCCEEEEC--CCCcCccCchHHHHHHHHHHHH-HHHHhCCCCeEE
Confidence 9999999999875 8999999988621 1123579999887 56533221 111222333333 333344999999
Q ss_pred EEeCcHHHHH
Q 014708 346 LQSDIEEVML 355 (420)
Q Consensus 346 ~~td~~~~~~ 355 (420)
+.|.+..+..
T Consensus 345 llt~~~~l~~ 354 (702)
T PRK11783 345 LFSSSPELLS 354 (702)
T ss_pred EEeCCHHHHH
Confidence 8887766543
No 213
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.12 E-value=1.5e-05 Score=82.60 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=72.9
Q ss_pred CCEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
..+|+|||||+|-+....++. .-..+|+++|.++.++...++++.+++. .+|+++++|++++. .+..+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~------lpekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE------LPEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC------HSS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC------CCCcee
Confidence 478999999999997655443 3457999999999999888887777887 46999999999872 255899
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 345 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~ 345 (420)
.|+.-...-. -. . -+.++.|....+.|||||.++
T Consensus 261 IIVSElLGsf-g~--n---El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSF-GD--N---ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTT-BT--T---TSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCc-cc--c---ccCHHHHHHHHhhcCCCCEEe
Confidence 9975422211 00 0 134688999999999998753
No 214
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.09 E-value=8.9e-06 Score=70.62 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=54.3
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhh
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 291 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~ 291 (420)
+++|||||.|.++..+++.+|..+++++|.++.+.+.+++++..++++|+++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999999999999999999999999999998888889998877754
No 215
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.09 E-value=1.6e-05 Score=84.34 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=60.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhCC--------CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCC
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRK--------DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPG 302 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P--------~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~ 302 (420)
..+|||.|||+|.+++.+++..+ +.+++|+|+++.++..|+.++...+.-...+.+.|.............+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 46899999999999999988764 2679999999999999999887665223455555543210000111135
Q ss_pred eEeEEEEeCCCCCCC
Q 014708 303 KLILVSIQCPNPDFN 317 (420)
Q Consensus 303 ~~d~i~~~fpdp~~k 317 (420)
.||.|..| .||-+
T Consensus 112 ~fD~IIgN--PPy~~ 124 (524)
T TIGR02987 112 LFDIVITN--PPYGR 124 (524)
T ss_pred cccEEEeC--CCccc
Confidence 79999998 77754
No 216
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.5e-05 Score=73.17 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhC----------CCcEEEEEcChhhhhhhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSG----------ITNGYFIATNATSTFRSIV 297 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~----------l~nv~~~~~Da~~~~~~~~ 297 (420)
++...||+|.|+|.++..+|.. -|..+.+|||.-++.++.+.+++.+.- ..++.++.+|......
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~--- 158 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA--- 158 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC---
Confidence 3678999999999999999966 455566999999999999999986542 3469999999988742
Q ss_pred ccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 298 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 298 ~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
...++|.|++.-..+ +..+.+...|+|||.+++-.
T Consensus 159 --e~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 159 --EQAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred --ccCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEEee
Confidence 457899999974333 45566777899999998854
No 217
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.96 E-value=1.6e-05 Score=65.56 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=43.9
Q ss_pred EEEcCCccHHHHHHHHhCCCC---eEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 235 VDIGSGNGLFLLGMARKRKDL---NFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 235 LDIGcG~G~~~~~lA~~~P~~---~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
|||||..|.++..+++..+.. +++++|..+. .+.+++.+++.++ .+++++++|..+.++.+. ..++|.+++-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEEC
Confidence 799999999999998875544 6999999996 3344444444454 369999999998865432 5789999986
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
-. |... .+ ..-++.+.+.|+|||.+++
T Consensus 77 g~-------H~~~-~~-~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 77 GD-------HSYE-AV-LRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp S----------HH-HH-HHHHHHHGGGEEEEEEEEE
T ss_pred CC-------CCHH-HH-HHHHHHHHHHcCCCeEEEE
Confidence 21 1111 11 2567889999999999987
No 218
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.95 E-value=3e-05 Score=72.00 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=73.7
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
..+.||.|+|-|..+-.+...+ --.|-.+|..++.++.|++.+......-..+.+..+.++.+ .+..+|+|++.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P-----~~~~YDlIW~Q 129 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP-----EEGKYDLIWIQ 129 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------TT-EEEEEEE
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC-----CCCcEeEEEeh
Confidence 5789999999999999875553 35799999999999999987655333447888888877632 35789999999
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+.-.+..+. .+ -+||+++...|+|+|.+++.
T Consensus 130 W~lghLTD~----dl--v~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 130 WCLGHLTDE----DL--VAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp S-GGGS-HH----HH--HHHHHHHHHHEEEEEEEEEE
T ss_pred HhhccCCHH----HH--HHHHHHHHHhCcCCcEEEEE
Confidence 654432111 12 37999999999999999996
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.92 E-value=2.9e-05 Score=76.68 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-------CCCCeEEEEeCChHHHHHHHHHhHHhCC--CcEEEEEcChhhhhhhhhccC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASY 300 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-------~P~~~viGiDis~~~i~~A~~~~~~~~l--~nv~~~~~Da~~~~~~~~~~~ 300 (420)
.+.+|+|-+||+|.+++++.+. .+..+++|+|+++.++..|+-++.-++. .+..+.++|..... ... .
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~--~~~-~ 122 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND--KFI-K 122 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH--SCT-S
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc--ccc-c
Confidence 3568999999999999998874 4788999999999999999988766664 34568888876541 110 1
Q ss_pred CCeEeEEEEeCCCCCCCC--cchh-------------hhhhHHHHHHHHHhhccCCeEEEEEeCcHH-----HHHHHHHH
Q 014708 301 PGKLILVSIQCPNPDFNR--PEHR-------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----VMLRMKQQ 360 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~~k~--~~~k-------------~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~-----~~~~~~~~ 360 (420)
...+|.|..+ .||-.. .+.. ..-..-.|+..+.+.|++||++.+...... +...+++.
T Consensus 123 ~~~~D~ii~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ 200 (311)
T PF02384_consen 123 NQKFDVIIGN--PPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKY 200 (311)
T ss_dssp T--EEEEEEE----CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHH
T ss_pred ccccccccCC--CCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHH
Confidence 4689999998 455332 1110 011123689999999999999876653322 22345665
Q ss_pred HHHc
Q 014708 361 FLEY 364 (420)
Q Consensus 361 l~~~ 364 (420)
+.+.
T Consensus 201 ll~~ 204 (311)
T PF02384_consen 201 LLEN 204 (311)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5443
No 220
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.91 E-value=0.00015 Score=71.65 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=100.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHH-----hCC--CcEEEEEcChhhhhhhhhccCC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQL-----SGI--TNGYFIATNATSTFRSIVASYP 301 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~-----~~l--~nv~~~~~Da~~~~~~~~~~~~ 301 (420)
....+|=+|-|.|.-+.++.+ +| -.+++-+|++|+|++.++++..- ... ++++++..|+.++++. ..
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----a~ 363 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----AA 363 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----hc
Confidence 357899999999999988875 68 56999999999999999854321 112 4699999999998653 35
Q ss_pred CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH----HHHHHHHHHHcCCce
Q 014708 302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV----MLRMKQQFLEYGKGK 368 (420)
Q Consensus 302 ~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~----~~~~~~~l~~~g~~~ 368 (420)
+.||.+++.+|||-- ..-.|+.+.+|-..+.+.|+++|.++++...+-+ +=.+...+++.|+..
T Consensus 364 ~~fD~vIVDl~DP~t---ps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~ 431 (508)
T COG4262 364 DMFDVVIVDLPDPST---PSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRV 431 (508)
T ss_pred ccccEEEEeCCCCCC---cchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCccee
Confidence 689999999999952 2234788899999999999999999998643221 223566778888643
No 221
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.90 E-value=4.5e-05 Score=69.24 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh-----hhhhhccCCCe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGK 303 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~-----~~~~~~~~~~~ 303 (420)
++..+||+||++|.|+..++++. +...++|+|+.+. ...+++.++++|..+. +...++.....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999999986 7799999999987 3346788888887653 12222111268
Q ss_pred EeEEEEeCCCCCCCCc---c-hhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 304 LILVSIQCPNPDFNRP---E-HRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~---~-~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+|.|......+....+ + ...++.. ..+..+.+.|+|||.+++.+
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~-~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLIL-SQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHH-HHHHHHHHHHCTTEEEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHH-HHHHHHHhhhcCCCEEEEEe
Confidence 9999875422211111 1 1113333 44456778899999988875
No 222
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.00018 Score=72.24 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=87.0
Q ss_pred CEEEEEcCCccHHHHHHHHhCCC--------------------------------C-------eEEEEeCChHHHHHHHH
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKD--------------------------------L-------NFLGLEVNGKLVTHCRD 272 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~--------------------------------~-------~viGiDis~~~i~~A~~ 272 (420)
..++|==||+|.++++.|...++ . .++|+|+++.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 56899999999999999988653 1 27899999999999999
Q ss_pred HhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchh--hhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 273 SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 273 ~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k--~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
|+++.|+.. +.|.++|+..+-+ +-.++|.|++| .||=..-..+ -.-+++.|.+.+.+.++--+.++|.|+
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~-----~~~~~gvvI~N--PPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKE-----PLEEYGVVISN--PPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCC-----CCCcCCEEEeC--CCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 999999875 9999999998721 11688999888 5552221111 222557888899999999899999875
Q ss_pred c
Q 014708 350 I 350 (420)
Q Consensus 350 ~ 350 (420)
-
T Consensus 346 e 346 (381)
T COG0116 346 E 346 (381)
T ss_pred H
Confidence 3
No 223
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.80 E-value=0.00043 Score=57.88 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=69.3
Q ss_pred EEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCC-CeEeEEEEeC
Q 014708 234 VVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQC 311 (420)
Q Consensus 234 vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~-~~~d~i~~~f 311 (420)
++|+|||+|... .+++..+. ..++|+|+++.++..++.........++.+...|.... .++... ..+|.+ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG---VLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC---CCCCCCCCceeEE-eee
Confidence 999999999987 44444444 48999999999999855554332221268888887652 012133 478888 443
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
...+... ....+..+.+.|+|+|.+.+...
T Consensus 127 ~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHLLP--------PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhcCC--------HHHHHHHHHHhcCCCcEEEEEec
Confidence 3222111 13788999999999999988754
No 224
>PRK00536 speE spermidine synthase; Provisional
Probab=97.80 E-value=0.00034 Score=67.44 Aligned_cols=114 Identities=8% Similarity=-0.072 Sum_probs=82.5
Q ss_pred CCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--CC--CcEEEEEcChhhhhhhhhccCCC
Q 014708 227 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPG 302 (420)
Q Consensus 227 ~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--~l--~nv~~~~~Da~~~~~~~~~~~~~ 302 (420)
.+++..+||=||-|.|..+.++.+. |. +++-+||++.+++.+++..... ++ ++++++.. + .+ ...+
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~---~~~~ 138 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LD---LDIK 138 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hh---ccCC
Confidence 3456789999999999999999976 54 9999999999999999854332 22 45777641 1 11 1246
Q ss_pred eEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH----HHHHHHHHHHH
Q 014708 303 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----VMLRMKQQFLE 363 (420)
Q Consensus 303 ~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~----~~~~~~~~l~~ 363 (420)
+||.|++-..++ ++|.+.+.+.|+|||.+..++..+. .+..+.+.+++
T Consensus 139 ~fDVIIvDs~~~-------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~ 190 (262)
T PRK00536 139 KYDLIICLQEPD-------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD 190 (262)
T ss_pred cCCEEEEcCCCC-------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence 899998852222 3899999999999999999875433 33445555555
No 225
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=9.1e-05 Score=70.97 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=59.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCC-eEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPG-KLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~-~~d~i~~ 309 (420)
+..|||||+|.|.+|..|+++ ...|+++|+++.++...+++.. ...|++++++|+.... + +.. ..+.|+.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d---~--~~l~~~~~vVa 101 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFD---F--PSLAQPYKVVA 101 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCc---c--hhhcCCCEEEE
Confidence 578999999999999999999 5679999999999999988765 4568999999998872 1 111 5677877
Q ss_pred eC
Q 014708 310 QC 311 (420)
Q Consensus 310 ~f 311 (420)
|-
T Consensus 102 Nl 103 (259)
T COG0030 102 NL 103 (259)
T ss_pred cC
Confidence 73
No 226
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.71 E-value=2.5e-05 Score=80.26 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=64.4
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEE---eCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGL---EVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGi---Dis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
-.++||||||+|.|+..|..+ +...+.+ |..+..++.|.+ .|+.- +.+-+. ..-+|+++++||.|
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale----RGvpa---~~~~~~---s~rLPfp~~~fDmv 185 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE----RGVPA---MIGVLG---SQRLPFPSNAFDMV 185 (506)
T ss_pred eEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh----cCcch---hhhhhc---cccccCCccchhhh
Confidence 468999999999999999987 3433332 444555555544 34431 111100 11235579999999
Q ss_pred EEe-CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 308 SIQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 308 ~~~-fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
++. +-.||.... .-+|-++.|+|+|||+|++..
T Consensus 186 Hcsrc~i~W~~~~--------g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 186 HCSRCLIPWHPND--------GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred hcccccccchhcc--------cceeehhhhhhccCceEEecC
Confidence 764 557884432 147889999999999999853
No 227
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.70 E-value=0.0028 Score=59.17 Aligned_cols=127 Identities=16% Similarity=0.132 Sum_probs=89.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..||-+|..+|....+++.- -|+..|+++|.|+...+....-+++ .+|+--+..||..- ..+-. .-+.+|.|+
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R~NIiPIl~DAr~P-~~Y~~-lv~~VDvI~ 148 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--RPNIIPILEDARHP-EKYRM-LVEMVDVIF 148 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--STTEEEEES-TTSG-GGGTT-TS--EEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--CCceeeeeccCCCh-HHhhc-ccccccEEE
Confidence 4789999999999999999998 5689999999999776655555443 35999999999864 22211 234899998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---------CcHHHHHHHHHHHHHcCCceeE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---------d~~~~~~~~~~~l~~~g~~~~~ 370 (420)
..-..|- . .+-++..+...||+||.+++.. +.+..+....+.|++.++...+
T Consensus 149 ~DVaQp~------Q----a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 149 QDVAQPD------Q----ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EE-SSTT------H----HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred ecCCChH------H----HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 8755542 1 1235667778999999998753 3455566677788888887644
No 228
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.67 E-value=0.00015 Score=67.43 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH-------hC--CCcEEEEEcChhhhh--hhhhc
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-------SG--ITNGYFIATNATSTF--RSIVA 298 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~-------~~--l~nv~~~~~Da~~~~--~~~~~ 298 (420)
++.+.+|||||.|...+..|..++-...+|||+.+...+.|+...+. .| ...+.+.++|..+.. ...+
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~- 120 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW- 120 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG-
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh-
Confidence 46899999999999999999888767799999999999888764332 23 346889999986531 1112
Q ss_pred cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
..-|.|++| +-.+... +. .-|.+....||+|-+++-
T Consensus 121 ---s~AdvVf~N--n~~F~~~------l~-~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 ---SDADVVFVN--NTCFDPD------LN-LALAELLLELKPGARIIS 156 (205)
T ss_dssp ---HC-SEEEE----TTT-HH------HH-HHHHHHHTTS-TT-EEEE
T ss_pred ---cCCCEEEEe--ccccCHH------HH-HHHHHHHhcCCCCCEEEE
Confidence 246788886 2111110 11 334566678888888753
No 229
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.65 E-value=0.00012 Score=64.05 Aligned_cols=63 Identities=29% Similarity=0.421 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHhHHhC--C-CcEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSG--I-TNGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~~~~~--l-~nv~~~~~Da~~~ 292 (420)
+...|+|+|||.|.++..|+.. .|+.+|+|+|.++..++.++++.++.+ . .++.+..++....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 4678999999999999999981 278999999999999999999988877 4 5677777766543
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.64 E-value=7.4e-05 Score=69.04 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=56.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFR 294 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~ 294 (420)
.++|+|.=||.|..++..|.++| .|++||+++.-|..|++|++-.|+++ ++|+|+|..+...
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~ 157 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS 157 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHH
Confidence 68899999999999999999964 69999999999999999999999874 9999999998754
No 231
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.63 E-value=6e-05 Score=69.67 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=63.9
Q ss_pred CCEEEEEcCCccHHHHHHH----Hh----CC-CCeEEEEeCChHHHHHHHHHh--------------HH-----hC----
Q 014708 231 QPLVVDIGSGNGLFLLGMA----RK----RK-DLNFLGLEVNGKLVTHCRDSL--------------QL-----SG---- 278 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA----~~----~P-~~~viGiDis~~~i~~A~~~~--------------~~-----~~---- 278 (420)
.-+|+-.||++|.=.-.|| +. .+ +..++|.|+|+.+++.|++-. .+ .+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 5689999999997543333 21 12 468999999999999998610 11 01
Q ss_pred -----CCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 279 -----ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 279 -----l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.++|+|.+.|+.+. . + ..+.+|.|++-----++. .-.+.++++.+++.|+|||+|++..
T Consensus 112 v~~~lr~~V~F~~~NL~~~-~---~-~~~~fD~I~CRNVlIYF~------~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP-D---P-PFGRFDLIFCRNVLIYFD------PETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS-------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred EChHHcCceEEEecccCCC-C---c-ccCCccEEEecCEEEEeC------HHHHHHHHHHHHHHcCCCCEEEEec
Confidence 14699999999872 1 1 467899997641111111 1133589999999999999999954
No 232
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.62 E-value=0.00026 Score=67.00 Aligned_cols=106 Identities=10% Similarity=0.195 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 228 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 228 ~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
++.+.+|.|+|||-+.++. .. ..+|+.+|+-+. |=+++.+|+.+. |..++++|.+
T Consensus 178 r~~~~vIaD~GCGEakiA~--~~---~~kV~SfDL~a~---------------~~~V~~cDm~~v-----Pl~d~svDva 232 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS--SE---RHKVHSFDLVAV---------------NERVIACDMRNV-----PLEDESVDVA 232 (325)
T ss_pred CcCceEEEecccchhhhhh--cc---ccceeeeeeecC---------------CCceeeccccCC-----cCccCcccEE
Confidence 3568899999999998876 11 246888876532 446778888875 4468999987
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---CcHHHHHHHHHHHHHcCCce
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DIEEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---d~~~~~~~~~~~l~~~g~~~ 368 (420)
.+..+ .+-. . + ..|+.++.|+|+|||.+++.- -..+. ....+.+...||..
T Consensus 233 V~CLS--LMgt-----n-~-~df~kEa~RiLk~gG~l~IAEv~SRf~dv-~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 233 VFCLS--LMGT-----N-L-ADFIKEANRILKPGGLLYIAEVKSRFSDV-KGFVRALTKLGFDV 286 (325)
T ss_pred EeeHh--hhcc-----c-H-HHHHHHHHHHhccCceEEEEehhhhcccH-HHHHHHHHHcCCee
Confidence 54311 1000 0 0 389999999999999999962 11221 12556677888875
No 233
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.61 E-value=0.00014 Score=67.08 Aligned_cols=108 Identities=9% Similarity=0.136 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 229 ~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..-+|.|+|||.+.++..+.+ ..+|.-.|+-.. |=.+..+|+.+. |.+++++|.+.
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---------------n~~Vtacdia~v-----PL~~~svDv~V 127 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---------------NPRVTACDIANV-----PLEDESVDVAV 127 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-S---------------STTEEES-TTS------S--TT-EEEEE
T ss_pred CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---------------CCCEEEecCccC-----cCCCCceeEEE
Confidence 4567999999999998855432 357999997653 223567888765 34689999986
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---CcHHHHHHHHHHHHHcCCcee
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---d~~~~~~~~~~~l~~~g~~~~ 369 (420)
+..+ .+-.. -..|++++.|+|||||.|.+.- -..+ .+...+.++..||...
T Consensus 128 fcLS--LMGTn-------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~-~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 128 FCLS--LMGTN-------WPDFIREANRVLKPGGILKIAEVKSRFEN-VKQFIKALKKLGFKLK 181 (219)
T ss_dssp EES-----SS--------HHHHHHHHHHHEEEEEEEEEEEEGGG-S--HHHHHHHHHCTTEEEE
T ss_pred EEhh--hhCCC-------cHHHHHHHHheeccCcEEEEEEecccCcC-HHHHHHHHHHCCCeEE
Confidence 5421 11110 1589999999999999999962 1111 2345667888898764
No 234
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.61 E-value=0.00029 Score=68.85 Aligned_cols=98 Identities=18% Similarity=0.333 Sum_probs=70.9
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+.+|||+|||+|.+..-.|+. ...+|+++|-|+ |.+.|++.+..+.+. ++.++.+-++++. .++.+|.++.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie------LPEk~DviIS 249 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE------LPEKVDVIIS 249 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc------CchhccEEEe
Confidence 688999999999988777766 357899999775 788998887766654 5889999888772 3667888754
Q ss_pred eCCCCCCCCcchhhhhhHHHHHH---HHHhhccCCeEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVE---AVSDLLVHDGKVF 345 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~---~i~~~LkpgG~l~ 345 (420)
.|. .--+++++.|+ ..+++|||.|..+
T Consensus 250 ---EPM------G~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 250 ---EPM------GYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred ---ccc------hhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 332 01134444444 3469999998754
No 235
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.56 E-value=0.00027 Score=69.09 Aligned_cols=85 Identities=13% Similarity=0.224 Sum_probs=51.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-CCC-cEEEEEcChh-hhhhhhhccCCCeEeEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GIT-NGYFIATNAT-STFRSIVASYPGKLILV 307 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-~l~-nv~~~~~Da~-~~~~~~~~~~~~~~d~i 307 (420)
..++||||||.-++--.|+.+..+++|+|.||++.+++.|++++.++ +++ +++++...-. .++..... ..+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEE
Confidence 56899999999998666655544899999999999999999999998 776 4877765332 23332221 34578888
Q ss_pred EEeCCCCCCCC
Q 014708 308 SIQCPNPDFNR 318 (420)
Q Consensus 308 ~~~fpdp~~k~ 318 (420)
.++ .|++..
T Consensus 182 mCN--PPFy~s 190 (299)
T PF05971_consen 182 MCN--PPFYSS 190 (299)
T ss_dssp EE-------SS
T ss_pred ecC--CccccC
Confidence 876 555443
No 236
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.53 E-value=0.00015 Score=70.91 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=70.9
Q ss_pred CCEEEEEcCCccHHHHHHHH----hCC----CCeEEEEeCChHHHHHHHHHh------------------HH-----hC-
Q 014708 231 QPLVVDIGSGNGLFLLGMAR----KRK----DLNFLGLEVNGKLVTHCRDSL------------------QL-----SG- 278 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~----~~P----~~~viGiDis~~~i~~A~~~~------------------~~-----~~- 278 (420)
.-+|+-.||.||.=.-.||- ..+ +..++|.|||+.+++.|++-. .+ .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 46899999999985444332 222 468999999999999998631 00 01
Q ss_pred ------C-CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 279 ------I-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 279 ------l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+ +.|+|.+.|+.+. .+ + ..+.||.|++...-.++.. -.+.++++.+++.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~--~~-~-~~~~fD~I~cRNvliyF~~------~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAK--QW-A-VPGPFDAIFCRNVMIYFDK------TTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCC--CC-c-cCCCcceeeHhhHHhcCCH------HHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1 3478888888652 11 1 2467999976311111111 123589999999999999998854
No 237
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.53 E-value=0.00032 Score=66.87 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
....|||||.|+|..+..|.+. ..+|+++|+++.|+....++.+....+ .++++++|.... ....+|.++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-------d~P~fd~cV 128 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-------DLPRFDGCV 128 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-------CCcccceee
Confidence 4689999999999999999998 789999999999999998887544333 499999999876 224567666
Q ss_pred EeCCCCCC-----CCc-c-----hhhhhhHHHHHHHHHhhccCCeEEEEEeCcH
Q 014708 309 IQCPNPDF-----NRP-E-----HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 351 (420)
Q Consensus 309 ~~fpdp~~-----k~~-~-----~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~ 351 (420)
.+-|-... |-- | ...-+++.+|...+ .=+||-.++...+..
T Consensus 129 sNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RL--va~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 129 SNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRL--VARPGDSLYCRLSIN 180 (315)
T ss_pred ccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhh--ccCCCCchhceeehh
Confidence 55332110 000 0 00113445665544 556888888776544
No 238
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.44 E-value=0.0023 Score=64.58 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.+|||.++-.|.=+.++|... -..-+++.|.+...+.....++++.|..|...+..|...+-...+ .++||.|.
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~---~~~fDRVL 317 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF---PGSFDRVL 317 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc---Ccccceee
Confidence 47899999999999999998873 456899999999999999999999999999999999987632334 33899997
Q ss_pred EeCC---------CCCCCCcc-----hhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 309 IQCP---------NPDFNRPE-----HRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 309 ~~fp---------dp~~k~~~-----~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
+.-| |+-.+... .+.-.+|+++|..+...+++||+|+-.|-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 7532 11111111 00123568999999999999999998873
No 239
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.42 E-value=0.00051 Score=66.39 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=71.4
Q ss_pred CCEEEEEcCCccHH----HHHHHHhCC-----CCeEEEEeCChHHHHHHHHH------h---------HH----h--C--
Q 014708 231 QPLVVDIGSGNGLF----LLGMARKRK-----DLNFLGLEVNGKLVTHCRDS------L---------QL----S--G-- 278 (420)
Q Consensus 231 ~~~vLDIGcG~G~~----~~~lA~~~P-----~~~viGiDis~~~i~~A~~~------~---------~~----~--~-- 278 (420)
.-+|.-.||+||.= ++.|.+..| ...++|.|||..+++.|++= . .+ . +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 56899999999974 444455565 58999999999999999751 1 00 0 1
Q ss_pred ------CCcEEEEEcChhhhhhhhhccCCCeEeEEEEe----CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 279 ------ITNGYFIATNATSTFRSIVASYPGKLILVSIQ----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 279 ------l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~----fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.++|+|-+.|+..-. + ..+.||.|++- |-|.. .+.++++..+..|+|||+|++-+
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~--~---~~~~fD~IfCRNVLIYFd~~----------~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDS--P---FLGKFDLIFCRNVLIYFDEE----------TQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCc--c---ccCCCCEEEEcceEEeeCHH----------HHHHHHHHHHHHhCCCCEEEEcc
Confidence 134777777776531 1 25678988542 22322 45689999999999999999953
No 240
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0024 Score=59.08 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-----hhhhccCCCe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVASYPGK 303 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-----~~~~~~~~~~ 303 (420)
++.+|+|+|+-.|.++..+++. .+...++|+|+.|-- ...+|.++++|...-. .+.+ ....
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l--~~~~ 111 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEAL--GGAP 111 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHc--CCCC
Confidence 4789999999999999999988 455679999998742 3567999999997631 1222 2344
Q ss_pred EeEEEEeCCCCCCCCc-----chhh-hhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 304 LILVSIQCPNPDFNRP-----EHRW-RMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~-----~~k~-Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+|.|.. |+.|... +|.+ -.+-...+..+...|+|||.|.+..
T Consensus 112 ~DvV~s---D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 112 VDVVLS---DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred cceEEe---cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 688865 4443322 2221 1122456677888999999998764
No 241
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.40 E-value=8.5e-05 Score=71.31 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..++|+|||+|..+.. +|.+.++|.|++...+..|++. +. .....+|+..+ |..+.+||....
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~----~~--~~~~~ad~l~~-----p~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS----GG--DNVCRADALKL-----PFREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC----CC--ceeehhhhhcC-----CCCCCccccchh
Confidence 478999999999998764 5999999999999998877552 21 15778888876 235677887643
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.-.-. |...|.-+...++++.+.|+|||...+.
T Consensus 110 iavih-----hlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 110 IAVIH-----HLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhh-----hhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 21111 1122333358999999999999987664
No 242
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00054 Score=63.26 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++.+||+||+|-|.....+-++.|..+++ ||-+++.+++.+...-. .-.||..+.+-.++.++.+ +++.||-|+.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~I-iE~hp~V~krmr~~gw~-ek~nViil~g~WeDvl~~L---~d~~FDGI~y 175 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWI-IEAHPDVLKRMRDWGWR-EKENVIILEGRWEDVLNTL---PDKHFDGIYY 175 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEE-EecCHHHHHHHHhcccc-cccceEEEecchHhhhccc---cccCcceeEe
Confidence 58999999999999988887777776654 89999999888876542 2358999988887775433 5788999976
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.-=.|. .. --..|...+.++|||+|.|-+-
T Consensus 176 DTy~e~-----yE---dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DTYSEL-----YE---DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred echhhH-----HH---HHHHHHHHHhhhcCCCceEEEe
Confidence 411111 00 0125677899999999999874
No 243
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.37 E-value=0.0022 Score=70.14 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=84.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhC-------C-----CCeEEEEeCCh---HHHHHHHH-----------HhHH-----hCC
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR-------K-----DLNFLGLEVNG---KLVTHCRD-----------SLQL-----SGI 279 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~-------P-----~~~viGiDis~---~~i~~A~~-----------~~~~-----~~l 279 (420)
.-+|+|+|+|+|...+...+.+ | ..+|+++|..+ +.+..+.+ ..+. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4789999999999876665443 4 46999999754 33333321 1111 122
Q ss_pred -------C--cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc
Q 014708 280 -------T--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 280 -------~--nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~ 350 (420)
. +++++.+|+.+.++.+ ...+|.+|+. +....+.+ .+-++++++.+++.++|||+|.-.|
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~lD---~FsP~~np--~~W~~~~~~~l~~~~~~~~~~~t~t-- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFLD---GFAPAKNP--DMWSPNLFNALARLARPGATLATFT-- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEeC---CCCCccCh--hhccHHHHHHHHHHhCCCCEEEEee--
Confidence 1 4678889999876432 3468998774 32111111 2345699999999999999998555
Q ss_pred HHHHHHHHHHHHHcCCcee
Q 014708 351 EEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 351 ~~~~~~~~~~l~~~g~~~~ 369 (420)
-...++..|.+.||...
T Consensus 207 --~a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 207 --SAGFVRRGLQEAGFTVR 223 (662)
T ss_pred --hHHHHHHHHHHcCCeee
Confidence 35568889999998754
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.33 E-value=0.0028 Score=58.92 Aligned_cols=122 Identities=11% Similarity=0.136 Sum_probs=95.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+..+.||||-.+.....|.+.+|...+++.|+++..++.|.++..+.++. .++..++|...-+. .+..+|.+++
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-----~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-----LEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-----ccCCcCEEEE
Confidence 34499999999999999999999999999999999999999999998875 57777787754421 3557899887
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~ 369 (420)
-..-. +++ .++|++-.+.|+.=-+++++..+.. .++++.+.+++|...
T Consensus 92 AGMGG---------~lI-~~ILee~~~~l~~~~rlILQPn~~~--~~LR~~L~~~~~~I~ 139 (226)
T COG2384 92 AGMGG---------TLI-REILEEGKEKLKGVERLILQPNIHT--YELREWLSANSYEIK 139 (226)
T ss_pred eCCcH---------HHH-HHHHHHhhhhhcCcceEEECCCCCH--HHHHHHHHhCCceee
Confidence 63222 233 3788888888876668888875544 478899999998764
No 245
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.01 Score=54.47 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=94.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..||=+|.-+|....+.+.-.++..++|+|.|+.........+++ .+|+--+..||..-. .+- .--+.+|+|+.
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~-~Y~-~~Ve~VDviy~ 151 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPE-KYR-HLVEKVDVIYQ 151 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcH-Hhh-hhcccccEEEE
Confidence 57899999999999999999999989999999999988777766655 358999999998642 211 01346899988
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---------CcHHHHHHHHHHHHHcCCceeE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---------d~~~~~~~~~~~l~~~g~~~~~ 370 (420)
.-..|- + ..=+...+...||+||++++.. |....+..-.+.+++.+|...+
T Consensus 152 DVAQp~------Q----a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 152 DVAQPN------Q----AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred ecCCch------H----HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 655542 1 1235677889999999776642 4566677677778888877654
No 246
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.26 E-value=0.00031 Score=65.40 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
..+.++||||+-|....+|..+. -.+++-+|.|..|++.++.- +..++. +....+|-+.+ ++.++++|.|..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~-qdp~i~-~~~~v~DEE~L-----df~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA-QDPSIE-TSYFVGDEEFL-----DFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc-CCCceE-EEEEecchhcc-----cccccchhhhhh
Confidence 46789999999999999998875 45799999999999988653 223332 44555665444 346899999976
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
...-.|..+ + |..+.++...|||+|.|+-.
T Consensus 144 SlslHW~Nd------L--Pg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWTND------L--PGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhcc------C--chHHHHHHHhcCCCccchhH
Confidence 655455211 1 57888999999999998754
No 247
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.23 E-value=0.0089 Score=52.06 Aligned_cols=88 Identities=14% Similarity=0.218 Sum_probs=60.0
Q ss_pred eEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEEEEeC---CCCCCCCcchhhhhhHHHHH
Q 014708 256 NFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQC---PNPDFNRPEHRWRMVQRSLV 331 (420)
Q Consensus 256 ~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f---pdp~~k~~~~k~Rl~~~~~l 331 (420)
+|+|+||.+.+++.+++++.+.++. ++++++.+=..+ ..+++ ++++|.+.+|+ |-.- +.-.-+.-..-..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l-~~~i~--~~~v~~~iFNLGYLPggD--k~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL-DEYIP--EGPVDAAIFNLGYLPGGD--KSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG-GGT----S--EEEEEEEESB-CTS---TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH-HhhCc--cCCcCEEEEECCcCCCCC--CCCCcCcHHHHHHH
Confidence 5899999999999999999998875 599999887776 45552 35899998883 3211 11111122234678
Q ss_pred HHHHhhccCCeEEEEEe
Q 014708 332 EAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 332 ~~i~~~LkpgG~l~~~t 348 (420)
+.+.+.|+|||.+.+..
T Consensus 76 ~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 76 EAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHEEEEEEEEEEE
T ss_pred HHHHHhhccCCEEEEEE
Confidence 99999999999998875
No 248
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.22 E-value=0.00047 Score=62.35 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=73.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
...+.|+|.|+|-++.-.|+. .-+|++||.+|.....|.+|++-.|..|+.++.+||.+.. | ..-|.|.+-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---f----e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---F----ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc---c----cccceeHHH
Confidence 367999999999998877766 6689999999999999999998889999999999998872 1 234665443
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 345 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~ 345 (420)
.-|-..-.- -+-..++.+...||.++.++
T Consensus 104 mlDTaLi~E------~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 104 MLDTALIEE------KQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhHHhhcc------cccHHHHHHHHHhhcCCccc
Confidence 222210000 01256777777888888875
No 249
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.18 E-value=0.0035 Score=60.82 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=64.3
Q ss_pred CCEEEEEcCCccHH-HHHHHHhC-CCCeEEEEeCChHHHHHHHHHhH-HhCCC-cEEEEEcChhhhhhhhhccCCCeEeE
Q 014708 231 QPLVVDIGSGNGLF-LLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQ-LSGIT-NGYFIATNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 231 ~~~vLDIGcG~G~~-~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~-~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~ 306 (420)
..+|+=||||.=-+ ++.|++++ ++..|+++|+++++++.+++-+. ..++. ++.|+++|+.+... .-..+|.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----dl~~~Dv 195 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----DLKEYDV 195 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----G----SE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----ccccCCE
Confidence 35899999996555 55667654 68899999999999999998776 44554 59999999987621 1247899
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
|++----.. ...+| .+++..+.+.++||..+.+++-
T Consensus 196 V~lAalVg~--~~e~K-----~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 196 VFLAALVGM--DAEPK-----EEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp EEE-TT-S------SH-----HHHHHHHHHHS-TTSEEEEEE-
T ss_pred EEEhhhccc--ccchH-----HHHHHHHHhhCCCCcEEEEecc
Confidence 987521111 11122 4789999999999999999973
No 250
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.13 E-value=0.0017 Score=58.41 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=81.4
Q ss_pred EcCCccHHHHHHHHhCC-CCeEEEE--eCChHHHHHH---HHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 237 IGSGNGLFLLGMARKRK-DLNFLGL--EVNGKLVTHC---RDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 237 IGcG~G~~~~~lA~~~P-~~~viGi--Dis~~~i~~A---~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
||=|+=.|+..||++++ ..++++. |-.++..+.- ..+++...-.++ .....||..+ ...+......||.|++
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l-~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKL-HKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcc-cccccccCCcCCEEEE
Confidence 67777788899999977 5566654 4444444333 244444322233 3456788887 3333224678999999
Q ss_pred eCCCCCCCCcc-----hhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHH-HHcCCcee
Q 014708 310 QCPNPDFNRPE-----HRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQF-LEYGKGKL 369 (420)
Q Consensus 310 ~fpdp~~k~~~-----~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l-~~~g~~~~ 369 (420)
|||-.-....+ +.+|.+=..|+..+.++|+++|.+++.. +.++|-.|-...+ +..|+...
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV 148 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence 99876411111 1222233699999999999999999974 4455655544444 45565543
No 251
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.02 Score=55.80 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 293 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~ 293 (420)
.+...+|.=.|-|.++..+.++.|+. +++|+|.++.+++.|+++....+ .++++++.+..++.
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~ 86 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLA 86 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHH
Confidence 35889999999999999999998765 59999999999999999987665 68999999877763
No 252
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.10 E-value=0.0026 Score=61.42 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++..|||||+|.|.++..|++.. .+++++|+++.+++..+++.. .-+|++++++|+..+..... ....-..|+.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~--~~~~~~~vv~ 103 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDL--LKNQPLLVVG 103 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGH--CSSSEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHh--hcCCceEEEE
Confidence 46889999999999999999985 899999999999999888765 45689999999998732111 1234455666
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccC
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 340 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkp 340 (420)
+- |+ -+...++.++...-+.
T Consensus 104 Nl--Py---------~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 104 NL--PY---------NISSPILRKLLELYRF 123 (262)
T ss_dssp EE--TG---------TGHHHHHHHHHHHGGG
T ss_pred Ee--cc---------cchHHHHHHHhhcccc
Confidence 63 33 1233566666654344
No 253
>PRK10742 putative methyltransferase; Provisional
Probab=97.10 E-value=0.0036 Score=59.65 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=62.5
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh------C--C-CcEEEEEcChhhhhhhhhccCC
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS------G--I-TNGYFIATNATSTFRSIVASYP 301 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~------~--l-~nv~~~~~Da~~~~~~~~~~~~ 301 (420)
.+.|||.=+|+|..+..+|.. ++.|+++|.++......++++++. + + .+++++++|+.+++.. ..
T Consensus 89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~----~~ 162 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----IT 162 (250)
T ss_pred CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh----CC
Confidence 468999999999999999988 778999999999999998888774 3 2 5799999999998753 23
Q ss_pred CeEeEEEEe
Q 014708 302 GKLILVSIQ 310 (420)
Q Consensus 302 ~~~d~i~~~ 310 (420)
.+||.||+-
T Consensus 163 ~~fDVVYlD 171 (250)
T PRK10742 163 PRPQVVYLD 171 (250)
T ss_pred CCCcEEEEC
Confidence 479999874
No 254
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.07 E-value=0.0044 Score=63.02 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=85.4
Q ss_pred CCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCc--EEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~n--v~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
..++||-=+|+|.=++.+++..+ ...|+.-|+|+++++..++|++.+++++ +.+.+.||..++. .....||.|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~I 125 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVI 125 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEE
Confidence 45899999999999999999944 4689999999999999999999999876 9999999998863 136789999
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHHHHHH-HHHHHHHcC
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLR-MKQQFLEYG 365 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~~~~~-~~~~l~~~g 365 (420)
.+ ||+= .+ ..||+.+.+.++.||.+.+. ||...+.-. -...+..+|
T Consensus 126 Dl---DPfG---Sp------~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg 173 (377)
T PF02005_consen 126 DL---DPFG---SP------APFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYG 173 (377)
T ss_dssp EE-----SS-----------HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHS
T ss_pred Ee---CCCC---Cc------cHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcC
Confidence 88 5641 11 27999999999999999986 665443221 233445554
No 255
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0047 Score=61.56 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=87.6
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
...|+|-=+|+|.=++.+|..-+...++.-|+|+++++..++|+..+...+...+..|+..++.+ ....||.|-+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----~~~~fd~IDi- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----LHRAFDVIDI- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----cCCCccEEec-
Confidence 57899999999999999999988889999999999999999999888566777777999988643 2367899876
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHHH
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV 353 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~~ 353 (420)
||+=. + -.|+..+.+.++.||.+.+. ||...+
T Consensus 128 --DPFGS---P------aPFlDaA~~s~~~~G~l~vTATD~a~L 160 (380)
T COG1867 128 --DPFGS---P------APFLDAALRSVRRGGLLCVTATDTAPL 160 (380)
T ss_pred --CCCCC---C------chHHHHHHHHhhcCCEEEEEecccccc
Confidence 45411 1 17999999999999999985 665443
No 256
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.00 E-value=0.00094 Score=67.36 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=77.5
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+..++|+|||.|.....++. +....++|+|.++-.+.++...+....++| ..++.+|..+. ++++..+|.+++
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-----~fedn~fd~v~~ 184 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-----PFEDNTFDGVRF 184 (364)
T ss_pred cccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-----CCCccccCcEEE
Confidence 44789999999999988875 557899999999999999988887777765 34466676655 236888998876
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+-.-.+ ...+ ..++.+++++++|||++...
T Consensus 185 ld~~~~-~~~~-------~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCH-APDL-------EKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred Eeeccc-CCcH-------HHHHHHHhcccCCCceEEeH
Confidence 632211 1111 27899999999999999874
No 257
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.99 E-value=0.0059 Score=60.12 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~ 308 (420)
++.+++|.=||.|..+..+++..|+..++|+|.++.+++.|++++...+ .++.+++++..++. ..+.. ...++|.|+
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~-~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFF-EHLDELLVTKIDGIL 97 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHH-HHHHhcCCCcccEEE
Confidence 4578999999999999999999878999999999999999999876543 57999999998873 33321 235688885
Q ss_pred Ee
Q 014708 309 IQ 310 (420)
Q Consensus 309 ~~ 310 (420)
+.
T Consensus 98 ~D 99 (305)
T TIGR00006 98 VD 99 (305)
T ss_pred Ee
Confidence 43
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.81 E-value=0.025 Score=53.51 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..||=+|=.. ..++++|...+..+++-+|+++..++.-++.+.+.|++ ++.++.|+.+-+++.+ .+.||.++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~---~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL---RGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT---SS-BSEEEE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH---hcCCCEEEe
Confidence 467899888444 33455666677789999999999999999999999997 9999999998765433 578999987
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCe-EEEEEe-Cc---HHHHHHHHHHHHHcCCceeEeec
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQS-DI---EEVMLRMKQQFLEYGKGKLVLVQ 373 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG-~l~~~t-d~---~~~~~~~~~~l~~~g~~~~~~~~ 373 (420)
. .||-... + .-|+.+....||.-| ..+|.. .. ......+++.+.+.|+.+..+..
T Consensus 119 D--PPyT~~G------~-~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 119 D--PPYTPEG------L-KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp -----SSHHH------H-HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred C--CCCCHHH------H-HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence 5 4442111 0 368899999999766 444442 22 22334588888899987655443
No 259
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.79 E-value=0.012 Score=56.74 Aligned_cols=123 Identities=15% Similarity=0.249 Sum_probs=70.3
Q ss_pred CEEEEEcCCcc--HHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc--------cC
Q 014708 232 PLVVDIGSGNG--LFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA--------SY 300 (420)
Q Consensus 232 ~~vLDIGcG~G--~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~--------~~ 300 (420)
...||||||-= ..+-+.|++ .|+++|+=+|..+-.+..++..+....-....++++|+.+- ...+. ..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p-~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP-EAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H-HHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH-HHHhcCHHHHhcCCC
Confidence 56899999943 345566666 89999999999999999998877544322389999999875 22221 02
Q ss_pred CCeEeEEEE---eC-CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---C-cHHHHHHHHHHHHHcC
Q 014708 301 PGKLILVSI---QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---D-IEEVMLRMKQQFLEYG 365 (420)
Q Consensus 301 ~~~~d~i~~---~f-pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---d-~~~~~~~~~~~l~~~g 365 (420)
+..+-.+.+ +| +|. ..+ ..+++.+...|.||.+|.+.. | .+...+.+.+.+.+.+
T Consensus 149 ~rPVavll~~vLh~v~D~----~dp------~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDD----DDP------AGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp TS--EEEECT-GGGS-CG----CTH------HHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred CCCeeeeeeeeeccCCCc----cCH------HHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 344444432 11 221 111 379999999999999999974 2 2333455566666554
No 260
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.038 Score=53.60 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=96.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHh--C--CCcEEEEEcChhhhhhhhhccCCCe
Q 014708 229 PAQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLS--G--ITNGYFIATNATSTFRSIVASYPGK 303 (420)
Q Consensus 229 ~~~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~--~--l~nv~~~~~Da~~~~~~~~~~~~~~ 303 (420)
++...+|=||=|.|.+....+++ +. .+++-+|+....++..++..... + -+.|.++.+|...++... ..+.
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~~ 195 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KENP 195 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccCC
Confidence 46788999999999999998887 44 37999999999999888875542 3 346999999999986543 4789
Q ss_pred EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHH
Q 014708 304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK 358 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~ 358 (420)
+|.|..--+||-- +.-.++++.++..+.+.||+||+++.+.|.-++.....
T Consensus 196 ~dVii~dssdpvg----pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i 246 (337)
T KOG1562|consen 196 FDVIITDSSDPVG----PACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYI 246 (337)
T ss_pred ceEEEEecCCccc----hHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHH
Confidence 9999998888862 33346778999999999999999999988755544333
No 261
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.072 Score=48.49 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-Chhhhh--hhhhc-cCCCeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTF--RSIVA-SYPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~--~~~~~-~~~~~~ 304 (420)
++.+|||+||..|.++.-.-++ +|+..++|||+-.- ..+..+.++++ |..+-. ..++. .+...+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 3789999999999999988777 59999999998642 22345667776 655421 11221 146778
Q ss_pred eEEEEe-CCCCC-CCCcchhhhhhH--HHHHHHHHhhccCCeEEEEEe
Q 014708 305 ILVSIQ-CPNPD-FNRPEHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 305 d~i~~~-fpdp~-~k~~~~k~Rl~~--~~~l~~i~~~LkpgG~l~~~t 348 (420)
|.|... .|++- ...++|. |++. ...+.-....++|+|.|+..+
T Consensus 138 dvVlSDMapnaTGvr~~Dh~-~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHY-RSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred cEEEeccCCCCcCcchhhHH-HHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 988654 23332 1111221 2221 344555667788999999886
No 262
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.028 Score=53.02 Aligned_cols=148 Identities=18% Similarity=0.111 Sum_probs=97.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+.++||||.-||.|+-.+.++- ..+|+|+|+....+..--+ ....-+.+-..|+..+.++.+ .+..|.+.+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR----~d~rV~~~E~tN~r~l~~~~~---~~~~d~~v~ 150 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR----NDPRVIVLERTNVRYLTPEDF---TEKPDLIVI 150 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh----cCCcEEEEecCChhhCCHHHc---ccCCCeEEE
Confidence 57999999999999999998873 5689999999876643322 122225566678877755544 224555543
Q ss_pred e--CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCC
Q 014708 310 Q--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG 387 (420)
Q Consensus 310 ~--fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~ 387 (420)
- |-. + ..+|..+...|+|++.+++-. .++++..++.+...|. + .|+.
T Consensus 151 DvSFIS-----------L--~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~~v~kkGv----v-~d~~----------- 199 (245)
T COG1189 151 DVSFIS-----------L--KLILPALLLLLKDGGDLVLLV--KPQFEAGREQVGKKGV----V-RDPK----------- 199 (245)
T ss_pred Eeehhh-----------H--HHHHHHHHHhcCCCceEEEEe--cchhhhhhhhcCcCce----e-cCcc-----------
Confidence 2 210 1 367888999999999887753 5677877776654442 1 2211
Q ss_pred CCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014708 388 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 417 (420)
Q Consensus 388 ~~~~~~~T~~E~~~~~~G~~i~~~~~~k~~ 417 (420)
.......+.+....+.|+.+..+.+..+.
T Consensus 200 -~~~~v~~~i~~~~~~~g~~~~gl~~Spi~ 228 (245)
T COG1189 200 -LHAEVLSKIENFAKELGFQVKGLIKSPIK 228 (245)
T ss_pred -hHHHHHHHHHHHHhhcCcEEeeeEccCcc
Confidence 11234556677777777777777777665
No 263
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.24 E-value=0.02 Score=56.83 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=92.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
-...+|+|-|.|..+-.+...||. +-|++.....+..++.... .| |..+-+|..+- .| . -|.|++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~----~P--~--~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQD----TP--K--GDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC---cceeccccccc----CC--C--cCeEEEE
Confidence 478999999999999999999987 6678888877777666553 33 77778888654 22 2 2477665
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEeeccccccccCCCCCCCCCC
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 390 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~~~D~~~~~~~~~~~~~~~~ 390 (420)
+.-...-+.+ + -.||+.++..|+|||.+++.-..-+- +...... ........|.+.. .+.+ ..-
T Consensus 244 WiLhdwtDed----c--vkiLknC~~sL~~~GkIiv~E~V~p~-e~~~dd~----~s~v~~~~d~lm~-~~~~----~Gk 307 (342)
T KOG3178|consen 244 WILHDWTDED----C--VKILKNCKKSLPPGGKIIVVENVTPE-EDKFDDI----DSSVTRDMDLLML-TQTS----GGK 307 (342)
T ss_pred eecccCChHH----H--HHHHHHHHHhCCCCCEEEEEeccCCC-CCCcccc----ccceeehhHHHHH-HHhc----cce
Confidence 3222111111 2 38999999999999999885211110 0000000 0000011121110 1111 011
Q ss_pred CCCCCHHHHHHHHCCCCeEEEEEE
Q 014708 391 FGVRSDWEQHVIDRGAPMYRLMLS 414 (420)
Q Consensus 391 ~~~~T~~E~~~~~~G~~i~~~~~~ 414 (420)
.....+||..+.++|++.+.+.+.
T Consensus 308 ert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 308 ERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred eccHHHHHhcchhhcCceeEEEec
Confidence 245688899999999999987654
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.03 E-value=0.032 Score=53.18 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=56.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
..+|+|||||---+++..-...|+..|+|+||+..+++...+-....+. +..+...|...-. +....|...++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~------~~~~~DlaLll 178 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDP------PKEPADLALLL 178 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSH------TTSEESEEEEE
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccC------CCCCcchhhHH
Confidence 6789999999999999888888899999999999999999988877774 4666666775541 46778988876
No 265
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.94 E-value=0.022 Score=52.11 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+.+|||+|+|+|.-.+.-|+.. ...++..|+.+..+...+-|+..++. ++.|.+.|..- .+..+|.+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--------~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--------SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--------CCcceeEEEe
Confidence 36889999999999999888763 46899999999999888888887774 68899888854 2667899866
Q ss_pred e
Q 014708 310 Q 310 (420)
Q Consensus 310 ~ 310 (420)
.
T Consensus 149 g 149 (218)
T COG3897 149 G 149 (218)
T ss_pred e
Confidence 4
No 266
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.089 Score=52.67 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCC---CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhh-h----ccC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKD---LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSI-V----ASY 300 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~---~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~-~----~~~ 300 (420)
++..|||++...|.=++.|.+. ++. ..+++=|+++..+...++........|+.....|+..+ +.. + +..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~-p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLF-PNIYLKDGNDKE 233 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceec-cccccccCchhh
Confidence 4789999999999999988777 433 37999999999999998888666666777777777665 222 1 011
Q ss_pred CCeEeEEEEeCC---CCCCCCc-------chhhh-----hhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 301 PGKLILVSIQCP---NPDFNRP-------EHRWR-----MVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 301 ~~~~d~i~~~fp---dp~~k~~-------~~k~R-----l~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
...||.|.+.-| |.++.+. ....| .+|-++|+.-.+.||+||.++-.|-
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 245899876543 3322111 11112 3567899999999999999998873
No 267
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.70 E-value=0.033 Score=54.92 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~ 308 (420)
++..++|.=.|.|.++..+.++.|+..++|+|.++.+++.|++++... -.++.+++++..++...+-.. ....+|.|.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence 467999999999999999999999999999999999999998887644 357999999988873322221 235788885
Q ss_pred E
Q 014708 309 I 309 (420)
Q Consensus 309 ~ 309 (420)
+
T Consensus 99 ~ 99 (310)
T PF01795_consen 99 F 99 (310)
T ss_dssp E
T ss_pred E
Confidence 4
No 268
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.67 E-value=0.095 Score=52.32 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
++..+|||||++|.++-.|+++ +..|++||..+ + + .++ ...++|..++.|...+.+ ....+|.+.+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l---~-~~L--~~~~~V~h~~~d~fr~~p-----~~~~vDwvVc 276 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-M---A-QSL--MDTGQVEHLRADGFKFRP-----PRKNVDWLVC 276 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-c---C-Hhh--hCCCCEEEEeccCcccCC-----CCCCCCEEEE
Confidence 4789999999999999999998 67999999554 1 1 111 234579999999987632 2567888877
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCC
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD 341 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg 341 (420)
..... + .+.++.+.++|..|
T Consensus 277 Dmve~------P------~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMVEK------P------ARVAELMAQWLVNG 296 (357)
T ss_pred ecccC------H------HHHHHHHHHHHhcC
Confidence 53221 1 15667777788665
No 269
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.66 E-value=0.12 Score=50.35 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=72.5
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
..+|||+|||.|..+.+....+|. ..++.+|.|+.|++.++..+..... .+.... .+.. .+..+ -..-|.|+
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~---~~~~~--~~~~DLvi 107 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLY---RDFLP--FPPDDLVI 107 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhh---ccccc--CCCCcEEE
Confidence 568999999999988887777774 4799999999999999887653321 111111 1111 00011 11238887
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE-EeCcHHH---HHHHHHHHHHcCCce
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL-QSDIEEV---MLRMKQQFLEYGKGK 368 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~-~td~~~~---~~~~~~~l~~~g~~~ 368 (420)
+.|.--.... ..| .++++.+.+.+.+ .|++ +...+.- ...+++.+.+.++.+
T Consensus 108 ~s~~L~EL~~---~~r---~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v 163 (274)
T PF09243_consen 108 ASYVLNELPS---AAR---AELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHV 163 (274)
T ss_pred EehhhhcCCc---hHH---HHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence 6652111111 112 3788888887766 4444 4333332 335666776666553
No 270
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.62 E-value=0.0056 Score=56.35 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+.++||+|.|.|.++..++..+. .|++.|.|..|..+.+++ +. || + .+.+..+ .+-.+|.|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----~y-nV--l--~~~ew~~-----t~~k~dli~c 175 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----NY-NV--L--TEIEWLQ-----TDVKLDLILC 175 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----CC-ce--e--eehhhhh-----cCceeehHHH
Confidence 457899999999999999998864 488999999998776553 22 11 1 1111111 2345677654
Q ss_pred e-CCCCCCCCcchhhhhhH-HHHHHHHHhhccC-CeEEEEE
Q 014708 310 Q-CPNPDFNRPEHRWRMVQ-RSLVEAVSDLLVH-DGKVFLQ 347 (420)
Q Consensus 310 ~-fpdp~~k~~~~k~Rl~~-~~~l~~i~~~Lkp-gG~l~~~ 347 (420)
+ .-|-+ .+ -.+|+.++.+|+| +|++++.
T Consensus 176 lNlLDRc----------~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 176 LNLLDRC----------FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHhh----------cChHHHHHHHHHHhccCCCcEEEE
Confidence 3 11111 11 2788999999999 8887664
No 271
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.51 E-value=0.021 Score=58.85 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=86.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
+..+|||.=|++|.-++..|+..|+. .+++-|.++.++...++|++.++..+ +...+.||..+.-.. +.....||.|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~-~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH-PMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc-cccccccceE
Confidence 46789999999999999999998886 79999999999999999998887765 778889998764221 1124689999
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCc
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDI 350 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~ 350 (420)
.+ ||+=.. ..||+.+.+.++.||.+++. ||.
T Consensus 188 DL---DPyGs~---------s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 188 DL---DPYGSP---------SPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred ec---CCCCCc---------cHHHHHHHHHhhcCCEEEEEecch
Confidence 77 665211 27999999999999999986 453
No 272
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.45 E-value=0.064 Score=49.82 Aligned_cols=107 Identities=12% Similarity=0.115 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHh---C-CCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhc--cCCC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK---R-KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVA--SYPG 302 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~---~-P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~--~~~~ 302 (420)
.+.+|+|+|.-.|..++-+|.. . ++.+|+|+|+.-....+.... .+.+ ++++|+++|..+. ..... ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e--~hp~~~rI~~i~Gds~d~-~~~~~v~~~~~ 108 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE--SHPMSPRITFIQGDSIDP-EIVDQVRELAS 108 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG--G----TTEEEEES-SSST-HHHHTSGSS--
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh--hccccCceEEEECCCCCH-HHHHHHHHhhc
Confidence 4689999999999999877653 3 889999999965544322221 2222 5799999999765 11110 0011
Q ss_pred eEeEE-EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 303 KLILV-SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 303 ~~d~i-~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
..+.+ .+. |..|...|- -+-|+.+...+++|+++++.
T Consensus 109 ~~~~vlVil--Ds~H~~~hv------l~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 109 PPHPVLVIL--DSSHTHEHV------LAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp --SSEEEEE--SS----SSH------HHHHHHHHHT--TT-EEEET
T ss_pred cCCceEEEE--CCCccHHHH------HHHHHHhCccCCCCCEEEEE
Confidence 12222 222 333222222 25667799999999999874
No 273
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.12 E-value=0.28 Score=45.73 Aligned_cols=119 Identities=11% Similarity=0.076 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCC--eEEEEeCChHHHHHHHHHhH--------------------------------
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDL--NFLGLEVNGKLVTHCRDSLQ-------------------------------- 275 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~--~viGiDis~~~i~~A~~~~~-------------------------------- 275 (420)
.+-.+-|=+||+|.++..++-.+++. +++|-||++++++.|++|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 35678999999999999988887664 79999999999999998753
Q ss_pred ---------Hh-CCCcEEEEEcChhhhhhh-hhccCCCeEeEEEEeCCCCCCCCcch-hhhhhHHHHHHHHHhhccCCeE
Q 014708 276 ---------LS-GITNGYFIATNATSTFRS-IVASYPGKLILVSIQCPNPDFNRPEH-RWRMVQRSLVEAVSDLLVHDGK 343 (420)
Q Consensus 276 ---------~~-~l~nv~~~~~Da~~~~~~-~~~~~~~~~d~i~~~fpdp~~k~~~~-k~Rl~~~~~l~~i~~~LkpgG~ 343 (420)
.. +..-..+.+.|+.+--.. -.+ .....|.|+...|-...-.+.. ..---.+++|+.++.+|-+++.
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 01 122356777777763110 011 2334688877644322111111 0011226899999999966666
Q ss_pred EEEEeCc
Q 014708 344 VFLQSDI 350 (420)
Q Consensus 344 l~~~td~ 350 (420)
+.+ ||-
T Consensus 210 V~v-~~k 215 (246)
T PF11599_consen 210 VAV-SDK 215 (246)
T ss_dssp EEE-EES
T ss_pred EEE-ecC
Confidence 666 653
No 274
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.10 E-value=0.1 Score=54.08 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=74.4
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE---
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI--- 309 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~--- 309 (420)
+++-+|||+-.+...+-+. -...++-+|+|+-.++....+-. ....-.++...|+..+. | ++++||.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~---f--edESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLV---F--EDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhcc---C--CCcceeEEEecCc
Confidence 6899999999999888766 24568999999999988876543 23344889999998762 3 6888888742
Q ss_pred ---eC---CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 ---QC---PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ---~f---pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.| +++|.+ + .....+.+++++|++||++...|
T Consensus 124 lDal~~de~a~~~~--~-----~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 124 LDALFEDEDALLNT--A-----HVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred cccccCCchhhhhh--H-----HhhHHHhhHHHHhccCCEEEEEE
Confidence 12 233321 1 12478899999999999987765
No 275
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.04 E-value=0.052 Score=56.37 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=75.4
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCC--eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDL--NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~--~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
-..|+|...|.|.|+++|... |-+ +|+=+ ..++.+.. +-.+|+-. +..|. .+.|++++.++|.|+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~-~~~ntL~v----IydRGLIG---~yhDW----CE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-PVWVMNVVPV-SGPNTLPV----IYDRGLIG---VYHDW----CEAFSTYPRTYDLLH 432 (506)
T ss_pred eeeeeeecccccHHHHHhccC-CceEEEeccc-CCCCcchh----hhhcccch---hccch----hhccCCCCcchhhee
Confidence 356999999999999999764 311 22222 11111111 11233211 11222 344667899999998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCcee
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~ 369 (420)
...--. ..+.|-.-..+|-++-|+|+|+|.++++ |.....+.+..++....|...
T Consensus 433 A~~lfs-----~~~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 433 ADGLFS-----LYKDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhhhhh-----hhcccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEE
Confidence 652111 1112222257889999999999999996 677888889999999888764
No 276
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.88 E-value=0.086 Score=49.18 Aligned_cols=109 Identities=13% Similarity=0.217 Sum_probs=72.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~i~~ 309 (420)
.-++|||||=+...... ..+-..|+.||+++. .. .+.+.|..+. + +| ..++.||.|.+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~----------~~-----~I~qqDFm~r-p--lp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ----------HP-----GILQQDFMER-P--LPKNESEKFDVISL 110 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC----------CC-----CceeeccccC-C--CCCCcccceeEEEE
Confidence 36799999976655444 345567999999872 11 3456666554 1 11 13567888743
Q ss_pred ----e-CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeE-----EEEEeC-----cHHHHH--HHHHHHHHcCCceeE
Q 014708 310 ----Q-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-----VFLQSD-----IEEVML--RMKQQFLEYGKGKLV 370 (420)
Q Consensus 310 ----~-fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~-----l~~~td-----~~~~~~--~~~~~l~~~g~~~~~ 370 (420)
+ .|+|- .| -+.++.+.+.|+|+|. |++.+. +..|+. ...+++...||..+.
T Consensus 111 SLVLNfVP~p~-------~R---G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 111 SLVLNFVPDPK-------QR---GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred EEEEeeCCCHH-------HH---HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence 3 36662 22 3899999999999999 888753 344443 466788899987643
No 277
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.87 E-value=0.11 Score=50.26 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH---------------------------------
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL--------------------------------- 276 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~--------------------------------- 276 (420)
+..+||==|||-|.++-++|++ +..+.|.|.|--|+-..+--+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4688999999999999999999 78999999999997544321110
Q ss_pred -------hCCCcEEEEEcChhhhhhhhhccCCCeEeEE-EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 277 -------SGITNGYFIATNATSTFRSIVASYPGKLILV-SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 277 -------~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i-~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
....|+.+..+|..++... +...+++|.| +++|-|-. .-+ -++++.+.++|||||+++ ..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~--~~~~~~~d~VvT~FFIDTA-------~Ni--~~Yi~tI~~lLkpgG~WI-N~ 201 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGP--DENKGSFDVVVTCFFIDTA-------ENI--IEYIETIEHLLKPGGYWI-NF 201 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCC--cccCCcccEEEEEEEeech-------HHH--HHHHHHHHHHhccCCEEE-ec
Confidence 0012344444555443110 0012577876 44555543 112 279999999999999653 21
Q ss_pred --------C--------cHHHHHHHHHHHHHcCCceeE
Q 014708 349 --------D--------IEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 349 --------d--------~~~~~~~~~~~l~~~g~~~~~ 370 (420)
+ .+--.++++++.+..||....
T Consensus 202 GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 202 GPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 1 122367889999999998653
No 278
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.75 E-value=0.026 Score=46.73 Aligned_cols=42 Identities=24% Similarity=0.503 Sum_probs=30.2
Q ss_pred cccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChH
Q 014708 222 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGK 265 (420)
Q Consensus 222 ~~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~ 265 (420)
|.+.....+.+..+|||||+|.+.--|.+. +..=.|+|....
T Consensus 50 W~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~R 91 (112)
T PF07757_consen 50 WRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDARRR 91 (112)
T ss_pred HhcccCCCCCCceEEccCCchHHHHHHHhC--CCCccccccccc
Confidence 433333224577999999999998888877 556689997653
No 279
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.051 Score=48.30 Aligned_cols=127 Identities=18% Similarity=0.166 Sum_probs=81.6
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh---CCCcEEEEEcChhhhhhhhhccCCCeEeE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~---~l~nv~~~~~Da~~~~~~~~~~~~~~~d~ 306 (420)
+..|||+|-|- |..++.+|...|+..|.-.|=++++++-.++....+ +++.+..+.-+.... .. ......||.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a-qs--q~eq~tFDi 106 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA-QS--QQEQHTFDI 106 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh-HH--HHhhCcccE
Confidence 46799999995 455667788899999999999999998877655433 222222222211111 00 002357999
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HHHHHHHHHHHHHcCCce
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~~~~~~~~~l~~~g~~~ 368 (420)
|... |..|-+-|| ..+++.+.+.|+|.|.-.+-+.- -+..+..++.....||..
T Consensus 107 IlaA--DClFfdE~h------~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v 161 (201)
T KOG3201|consen 107 ILAA--DCLFFDEHH------ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTV 161 (201)
T ss_pred EEec--cchhHHHHH------HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEE
Confidence 8765 666555555 38999999999999986665532 223444566666777553
No 280
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.42 E-value=0.14 Score=43.77 Aligned_cols=77 Identities=8% Similarity=-0.012 Sum_probs=52.3
Q ss_pred cEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHH
Q 014708 281 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 360 (420)
Q Consensus 281 nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~ 360 (420)
++++..+|+.+.++.+ +..+|.+|+. +....+.+ .+-+.++++.++++++|||.+.-.|- ...+++.
T Consensus 32 ~L~L~~gDa~~~l~~l----~~~~Da~ylD---gFsP~~nP--elWs~e~~~~l~~~~~~~~~l~Tys~----a~~Vr~~ 98 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL----DARFDAWYLD---GFSPAKNP--ELWSEELFKKLARLSKPGGTLATYSS----AGAVRRA 98 (124)
T ss_dssp EEEEEES-HHHHHHHB-----T-EEEEEE----SS-TTTSG--GGSSHHHHHHHHHHEEEEEEEEES------BHHHHHH
T ss_pred EEEEEEcHHHHHHHhC----cccCCEEEec---CCCCcCCc--ccCCHHHHHHHHHHhCCCcEEEEeec----hHHHHHH
Confidence 4889999998886542 4689999874 33222222 24457999999999999999876553 3458889
Q ss_pred HHHcCCceeE
Q 014708 361 FLEYGKGKLV 370 (420)
Q Consensus 361 l~~~g~~~~~ 370 (420)
|.+.||.+..
T Consensus 99 L~~aGF~v~~ 108 (124)
T PF05430_consen 99 LQQAGFEVEK 108 (124)
T ss_dssp HHHCTEEEEE
T ss_pred HHHcCCEEEE
Confidence 9999988643
No 281
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.42 E-value=0.4 Score=45.43 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..||=+|.++|....+.+.. -|+..|+++|.|...=.....-+. ..+|+-.+.-||..- ..+-- .-.-+|.||
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--kRtNiiPIiEDArhP-~KYRm-lVgmVDvIF 231 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--KRTNIIPIIEDARHP-AKYRM-LVGMVDVIF 231 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--ccCCceeeeccCCCc-hheee-eeeeEEEEe
Confidence 4789999999999999999887 699999999999654332222221 236899999999764 11100 123678887
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe---------CcHHHHHHHHHHHHHcCCce
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t---------d~~~~~~~~~~~l~~~g~~~ 368 (420)
...+.|- ..| -+.-.....||+||-|.+.. +.+..+..-.+.|++..+..
T Consensus 232 aDvaqpd------q~R----ivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP 290 (317)
T KOG1596|consen 232 ADVAQPD------QAR----IVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKP 290 (317)
T ss_pred ccCCCch------hhh----hhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCc
Confidence 6655552 112 23345677899999998853 23444444444555554443
No 282
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.34 E-value=0.22 Score=52.49 Aligned_cols=117 Identities=19% Similarity=0.167 Sum_probs=77.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhCC----CCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhh-ccCCCeE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRK----DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIV-ASYPGKL 304 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P----~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~-~~~~~~~ 304 (420)
..+|.|-.||+|.+.+..++..- +..++|.|+++.....|+-+.--+|+. ++...++|...- +..- ......|
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~-~~~~~~~~~~~~ 265 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN-PKHDDKDDKGKF 265 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC-CcccccCCccce
Confidence 45899999999999888776642 378999999999999999999888886 456666665443 1110 0123568
Q ss_pred eEEEEeCCCC---CCCCc---c-hhhhh---------hH-HHHHHHHHhhccCCeEEEEEe
Q 014708 305 ILVSIQCPNP---DFNRP---E-HRWRM---------VQ-RSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 305 d~i~~~fpdp---~~k~~---~-~k~Rl---------~~-~~~l~~i~~~LkpgG~l~~~t 348 (420)
|.|..+-|.- |-... . ..++. -. ..|+..+...|+|||+..+..
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 9888873321 21110 0 00000 01 578999999999988666543
No 283
>PRK13699 putative methylase; Provisional
Probab=94.29 E-value=0.23 Score=47.00 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=53.6
Q ss_pred EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCC-cch-hhh-------hhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014708 282 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PEH-RWR-------MVQRSLVEAVSDLLVHDGKVFLQSDIEE 352 (420)
Q Consensus 282 v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~-~~~-k~R-------l~~~~~l~~i~~~LkpgG~l~~~td~~~ 352 (420)
.+++++|+.+.+.. + +++++|+|+.. .|+... ++. .+. -....++.+++|+|||||.+++-+++..
T Consensus 2 ~~l~~gD~le~l~~-l--pd~SVDLIiTD--PPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~ 76 (227)
T PRK13699 2 SRFILGNCIDVMAR-F--PDNAVDFILTD--PPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR 76 (227)
T ss_pred CeEEechHHHHHHh-C--CccccceEEeC--CCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc
Confidence 46889999988653 3 58999999775 444311 100 110 0124788999999999999987666543
Q ss_pred HHHHHHHHHHHcCCcee
Q 014708 353 VMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 353 ~~~~~~~~l~~~g~~~~ 369 (420)
. ......+++.||...
T Consensus 77 ~-~~~~~al~~~GF~l~ 92 (227)
T PRK13699 77 V-DRFMAAWKNAGFSVV 92 (227)
T ss_pred H-HHHHHHHHHCCCEEe
Confidence 2 335567788887643
No 284
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.03 E-value=0.18 Score=52.33 Aligned_cols=132 Identities=7% Similarity=0.030 Sum_probs=92.3
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc--CCCeEeEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS--YPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~--~~~~~d~i~ 308 (420)
...+|=+|-|.|.+..-+-...|...++++|+.+.+++.|.++..-..-.+...+..|..+++.+.... .+..+|.+.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 567888999999999999989999999999999999999998765433234556667777765544321 346788886
Q ss_pred Ee--CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE--eCcHHHHHHHHHHHHH
Q 014708 309 IQ--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLE 363 (420)
Q Consensus 309 ~~--fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~--td~~~~~~~~~~~l~~ 363 (420)
+. -+|++ -..-+....+.+.+|..+...|.|-|.|.+. +-+..+..+++.-|+.
T Consensus 376 ~dvds~d~~-g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~ 433 (482)
T KOG2352|consen 376 VDVDSKDSH-GMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK 433 (482)
T ss_pred EECCCCCcc-cCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence 64 33422 1111222345568899999999999998774 5555666666655543
No 285
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.96 E-value=0.6 Score=45.39 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=78.1
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 312 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp 312 (420)
.++|+-||.|.+...+.+.. -..+.++|+++.+++..+.|.. +. ++++|+.++....+ ...+|.++..+|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~~~---~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEKDF---IPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchhhc---CCCCCEEEeCCC
Confidence 48999999999988887763 2358899999999988877753 21 66788887632211 346899888754
Q ss_pred CC-CCCC------cchhhhhhHHHHHHHHHhhccCCeEEEEE-------eCcHHHHHHHHHHHHHcCCceeE
Q 014708 313 NP-DFNR------PEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 313 dp-~~k~------~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-------td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
=. +... .+.+..++ ..+++.+ +.++|- .|+++ .+....+..+++.|++.|+...+
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~-~~~~~~i-~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLF-FEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW 140 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHH-HHHHHHH-HhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence 21 1111 11222233 2455433 445675 44444 12234567788899999886543
No 286
>PRK11524 putative methyltransferase; Provisional
Probab=93.94 E-value=0.25 Score=48.21 Aligned_cols=81 Identities=9% Similarity=0.077 Sum_probs=51.7
Q ss_pred CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcc---h-----hhhhh--HHHHHHHHHhhccCCeEEEEEeC
Q 014708 280 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE---H-----RWRMV--QRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 280 ~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~---~-----k~Rl~--~~~~l~~i~~~LkpgG~l~~~td 349 (420)
.+.+++++|+.+.+.. + +++++|+|++. .|+..... . ..+.. -..++.++.++|||||.|++.++
T Consensus 7 ~~~~i~~gD~~~~l~~-l--~~~siDlIitD--PPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKK-I--PSESVDLIFAD--PPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHh-c--ccCcccEEEEC--CCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4568999999997543 3 47899999885 34322110 0 01111 14788999999999999999877
Q ss_pred cHHHHHHHHHHHHHcCCc
Q 014708 350 IEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 350 ~~~~~~~~~~~l~~~g~~ 367 (420)
..... . ...+.+.+|.
T Consensus 82 ~~~~~-~-~~~~~~~~f~ 97 (284)
T PRK11524 82 TENMP-F-IDLYCRKLFT 97 (284)
T ss_pred chhhh-H-HHHHHhcCcc
Confidence 65432 2 3344455554
No 287
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.91 E-value=0.26 Score=45.23 Aligned_cols=130 Identities=15% Similarity=0.036 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHh-CCCCeEEEEeCChHHH----HHHH--HHhHHhCCCcEEEEEcChhhhhhhhhccCCC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLV----THCR--DSLQLSGITNGYFIATNATSTFRSIVASYPG 302 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~-~P~~~viGiDis~~~i----~~A~--~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~ 302 (420)
.+..|+|+=.|.|.++.-++.. -|...|+++--.+... ...+ .-..+....|+..+-.+...+. +++
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~------~pq 121 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG------APQ 121 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC------CCC
Confidence 5789999999999999999987 6777888874333211 1111 1112233456665555554441 355
Q ss_pred eEeEEEE--eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe----------CcHHH----HHHHHHHHHHcCC
Q 014708 303 KLILVSI--QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS----------DIEEV----MLRMKQQFLEYGK 366 (420)
Q Consensus 303 ~~d~i~~--~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t----------d~~~~----~~~~~~~l~~~g~ 366 (420)
..|.++. ++-|-+.+.-|.. .-..+.+.+++.|||||.+.+.- |.... ..-+++..+..||
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~---~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGF 198 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPA---TAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGF 198 (238)
T ss_pred cccccccchhhhhhhccccCcc---hHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcc
Confidence 5666643 2233333333322 22577889999999999998751 11111 1235666777787
Q ss_pred ce
Q 014708 367 GK 368 (420)
Q Consensus 367 ~~ 368 (420)
..
T Consensus 199 kl 200 (238)
T COG4798 199 KL 200 (238)
T ss_pred ee
Confidence 64
No 288
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.58 E-value=0.24 Score=46.95 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=48.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHH---HHhHHhC-C-----CcEEEEEcChhhhhhhhhccCC
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR---DSLQLSG-I-----TNGYFIATNATSTFRSIVASYP 301 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~---~~~~~~~-l-----~nv~~~~~Da~~~~~~~~~~~~ 301 (420)
.+.|||.=||-|.-++-+|.. +++|+++|.|+-+....+ +++.... . .+++++++|+.+++. .++
T Consensus 76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~ 149 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD 149 (234)
T ss_dssp ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence 468999999999999999975 679999999987665544 3333322 2 479999999999864 247
Q ss_pred CeEeEEEEeCCCCCCCC
Q 014708 302 GKLILVSIQCPNPDFNR 318 (420)
Q Consensus 302 ~~~d~i~~~fpdp~~k~ 318 (420)
.++|.||+ ||.|..
T Consensus 150 ~s~DVVY~---DPMFp~ 163 (234)
T PF04445_consen 150 NSFDVVYF---DPMFPE 163 (234)
T ss_dssp S--SEEEE-----S---
T ss_pred CCCCEEEE---CCCCCC
Confidence 89999988 676544
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.42 E-value=0.51 Score=47.94 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC-hhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN-ATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D-a~~~~~~~~~~~~~~~d~i 307 (420)
.+..||.+|||. |..++.+|+......++++|.+++..+.+++.. +...+.....+ ....+.... ....+|.+
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~--~~~~~D~v 258 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELT--GGRGPDVC 258 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHc--CCCCCCEE
Confidence 467899999998 999999999976557999999999888877642 22212222221 222112221 23357776
Q ss_pred EEeCC-C----CCCCCcchh--hhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 308 SIQCP-N----PDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 308 ~~~fp-d----p~~k~~~~k--~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+-... + +|.+-..+. .+=-....++.+.+.|+++|.++...
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 44211 0 110000000 00001357788899999999998764
No 290
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.36 E-value=1 Score=37.14 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=68.0
Q ss_pred CCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCC
Q 014708 239 SGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 316 (420)
Q Consensus 239 cG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~ 316 (420)
||.|.++..+++. ..+..|+.+|.+++.++.+++. + +.++.+|+.+.. -+-...-...+.+++..++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~~-~l~~a~i~~a~~vv~~~~~d~- 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATDPE-VLERAGIEKADAVVILTDDDE- 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSHH-HHHHTTGGCESEEEEESSSHH-
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchhhh-HHhhcCccccCEEEEccCCHH-
Confidence 6778888888776 2234799999999988776543 3 578999998751 111112356788888754431
Q ss_pred CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCc
Q 014708 317 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 317 k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~ 367 (420)
..-.+....+.+.|...++...+.+.+. +.|++.|..
T Consensus 75 ----------~n~~~~~~~r~~~~~~~ii~~~~~~~~~----~~l~~~g~d 111 (116)
T PF02254_consen 75 ----------ENLLIALLARELNPDIRIIARVNDPENA----ELLRQAGAD 111 (116)
T ss_dssp ----------HHHHHHHHHHHHTTTSEEEEEESSHHHH----HHHHHTT-S
T ss_pred ----------HHHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHCCcC
Confidence 1134455667788999999998877763 345555544
No 291
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.24 E-value=0.16 Score=48.92 Aligned_cols=133 Identities=16% Similarity=0.062 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC---------------------------C-Cc
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---------------------------I-TN 281 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~---------------------------l-~n 281 (420)
.+.++||||||.--+-+.-|..+ -.+++..|.++.-.+..++.+...+ + +.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35689999999965532222221 2469999999998887776543211 0 11
Q ss_pred E-EEEEcChhhhhhhhhcc---CCCeEeEEEEeCCCC-CCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-------
Q 014708 282 G-YFIATNATSTFRSIVAS---YPGKLILVSIQCPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD------- 349 (420)
Q Consensus 282 v-~~~~~Da~~~~~~~~~~---~~~~~d~i~~~fpdp-~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td------- 349 (420)
| +++.+|..+.. .+.. .+..+|.|...|.-. ..++ +-.....++.+.++|||||.|++..-
T Consensus 135 Vk~Vv~cDV~~~~--pl~~~~~~p~~~D~v~s~fcLE~a~~d-----~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~ 207 (256)
T PF01234_consen 135 VKQVVPCDVTQPN--PLDPPVVLPPKFDCVISSFCLESACKD-----LDEYRRALRNISSLLKPGGHLILAGVLGSTYYM 207 (256)
T ss_dssp EEEEEE--TTSSS--TTTTS-SS-SSEEEEEEESSHHHH-SS-----HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE
T ss_pred hceEEEeeccCCC--CCCccccCccchhhhhhhHHHHHHcCC-----HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE
Confidence 2 36667776541 1110 123599987765311 1111 12345789999999999999998631
Q ss_pred --c------HHHHHHHHHHHHHcCCceeE
Q 014708 350 --I------EEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 350 --~------~~~~~~~~~~l~~~g~~~~~ 370 (420)
. .--.+.+.+.+++.|+.+..
T Consensus 208 vG~~~F~~l~l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 208 VGGHKFPCLPLNEEFVREALEEAGFDIED 236 (256)
T ss_dssp ETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred ECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence 0 00134577888888876543
No 292
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.06 E-value=1.5 Score=42.94 Aligned_cols=124 Identities=19% Similarity=0.126 Sum_probs=80.4
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 312 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp 312 (420)
+++|+-||-|.+...+.+.. -..+.++|+++.+.+.-+.|.. ...++|+.++....++ . .+|.++..+|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~--~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLP--K-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHH--H-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------cccccccccccccccc--c-cceEEEeccC
Confidence 58999999999999988874 2368999999999888877753 7788999988544453 2 5999988765
Q ss_pred -CCCCCCcc------hhhhhhHHHHHHHHHhhccCCeEEEEE-------eCcHHHHHHHHHHHHHcCCceeE
Q 014708 313 -NPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 313 -dp~~k~~~------~k~Rl~~~~~l~~i~~~LkpgG~l~~~-------td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
.++..... .+..|+ ..+++.+ +.++|-- |+++ ++....++.+++.|++.|+...+
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~-~~~~~~v-~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~ 139 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLF-FEFLRIV-KELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYNVQW 139 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHH-HHHHHHH-HHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred CceEeccccccccccccchhh-HHHHHHH-hhccceE-EEecccceeeccccccccccccccccccceeehh
Confidence 33333321 111222 3455544 4567854 4455 12335678899999999976543
No 293
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=1.7 Score=41.49 Aligned_cols=113 Identities=10% Similarity=0.093 Sum_probs=72.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCC----CeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKD----LNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKL 304 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~----~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~ 304 (420)
+...+|+|.|+-.=+..|...+.. ..|+-||+|...++...+.+.+. .+ .+.-+++|...-+.. .+..-
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~-y~~l~v~~l~~~~~~~La~----~~~~~ 153 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE-YPGLEVNALCGDYELALAE----LPRGG 153 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh-CCCCeEeehhhhHHHHHhc----ccCCC
Confidence 567999999999887777665444 78999999999887655544332 22 355667777654321 12222
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 352 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~ 352 (420)
..++++ +-.-.-+..+..+ ..||.++...|+||-+|.+-+|...
T Consensus 154 ~Rl~~f-lGStlGN~tp~e~---~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 154 RRLFVF-LGSTLGNLTPGEC---AVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred eEEEEE-ecccccCCChHHH---HHHHHHHHhcCCCcceEEEeccccC
Confidence 334332 2111111112112 3799999999999999999887644
No 294
>PRK11524 putative methyltransferase; Provisional
Probab=92.85 E-value=0.24 Score=48.44 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=40.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL 276 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~ 276 (420)
++.+|||-=||+|..+++..+. +.+++|+|++++.++.|++++..
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 5899999999999999887766 78999999999999999999753
No 295
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.65 E-value=0.43 Score=45.75 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=69.5
Q ss_pred CCEEEEEcCCccHHHHHHHHh-----CCCCeEEEEeCCh--------------------------HHHHHHHHHhHHhCC
Q 014708 231 QPLVVDIGSGNGLFLLGMARK-----RKDLNFLGLEVNG--------------------------KLVTHCRDSLQLSGI 279 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~-----~P~~~viGiDis~--------------------------~~i~~A~~~~~~~~l 279 (420)
...++|.||=.|..++.++.. .++.++++.|.-+ ..++..+++..+.++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 467999999999877655432 3677899998321 134445555555554
Q ss_pred --CcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH---H
Q 014708 280 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV---M 354 (420)
Q Consensus 280 --~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~---~ 354 (420)
.|++|+.+...+-++.. +...+..+++-. |-+ .+ ....|+.++..|.|||.++| |.... .
T Consensus 155 ~~~~v~~vkG~F~dTLp~~---p~~~IAll~lD~-DlY--es-------T~~aLe~lyprl~~GGiIi~--DDY~~~gcr 219 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDA---PIERIALLHLDC-DLY--ES-------TKDALEFLYPRLSPGGIIIF--DDYGHPGCR 219 (248)
T ss_dssp SSTTEEEEES-HHHHCCC----TT--EEEEEE----SH--HH-------HHHHHHHHGGGEEEEEEEEE--SSTTTHHHH
T ss_pred CcccEEEECCcchhhhccC---CCccEEEEEEec-cch--HH-------HHHHHHHHHhhcCCCeEEEE--eCCCChHHH
Confidence 57999999997765321 244565555531 111 00 13788999999999999998 54332 3
Q ss_pred HHHHHHHHHcCCce
Q 014708 355 LRMKQQFLEYGKGK 368 (420)
Q Consensus 355 ~~~~~~l~~~g~~~ 368 (420)
+.+-+-+++++...
T Consensus 220 ~AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 220 KAVDEFRAEHGITD 233 (248)
T ss_dssp HHHHHHHHHTT--S
T ss_pred HHHHHHHHHcCCCC
Confidence 33444556776654
No 296
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.38 E-value=0.27 Score=50.26 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=44.9
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEE
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIA 286 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~ 286 (420)
..+||||+|+|.+....++...+ .++++|+-..|...|++-.+++|.+ ++.++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 56999999999998888877644 5999999999999999999988864 455543
No 297
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.12 E-value=0.23 Score=46.70 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=73.6
Q ss_pred eeeeeeccccCCCccccccCCcccccc----ccccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHH
Q 014708 196 AVWEFLKGRMLPGVSALDRAFPFDIDW----SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 271 (420)
Q Consensus 196 a~le~l~g~~lPgv~aL~~~~p~~~~~----~~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~ 271 (420)
..|++-+|...|-+.--.+...+..++ ...... .+.++||||.|--++--.+.-+.=.+.|+|.|+++.+++.|+
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~-~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~ 119 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPG-KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAK 119 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCc-CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHH
Confidence 458888888777652111111111111 111111 467899999999988766666644789999999999999999
Q ss_pred HHhHHh-CCCc-EEEEE-cChhhhhhhhhccCCCeEeEEEEeCCCCCC
Q 014708 272 DSLQLS-GITN-GYFIA-TNATSTFRSIVASYPGKLILVSIQCPNPDF 316 (420)
Q Consensus 272 ~~~~~~-~l~n-v~~~~-~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~ 316 (420)
..+..+ ++++ +++.+ -|-..+++.... ..+.||...+| .|.+
T Consensus 120 ~ii~~N~~l~~~I~lr~qk~~~~if~giig-~nE~yd~tlCN--PPFh 164 (292)
T COG3129 120 AIISANPGLERAIRLRRQKDSDAIFNGIIG-KNERYDATLCN--PPFH 164 (292)
T ss_pred HHHHcCcchhhheeEEeccCcccccccccc-ccceeeeEecC--CCcc
Confidence 998876 5654 55543 344344443331 35788988876 5543
No 298
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.72 E-value=0.81 Score=46.65 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=61.6
Q ss_pred CCEEEEEcCCccHHHHHHHHh---------------CCCCeEEEEeCChHHHHHHHHHhHH--------------hCCCc
Q 014708 231 QPLVVDIGSGNGLFLLGMARK---------------RKDLNFLGLEVNGKLVTHCRDSLQL--------------SGITN 281 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~---------------~P~~~viGiDis~~~i~~A~~~~~~--------------~~l~n 281 (420)
.-.|+|+|||+|..++.+... -|+.+|+.-|.-..=....-+.+.. .+. +
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~-~ 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH-R 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC-C
Confidence 457999999999776554221 2567777777653222222222111 010 1
Q ss_pred EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCC--------cc---hhh----------------hhhH---HHHH
Q 014708 282 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR--------PE---HRW----------------RMVQ---RSLV 331 (420)
Q Consensus 282 v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~--------~~---~k~----------------Rl~~---~~~l 331 (420)
--|+.+=.-.+...+| ++++++.++..+.-.|..+ .+ .|. +..+ ..||
T Consensus 143 ~~f~~gvpGSFY~RLf--P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL 220 (386)
T PLN02668 143 SYFAAGVPGSFYRRLF--PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFL 220 (386)
T ss_pred ceEEEecCcccccccc--CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 1233322223323445 5888999877665444221 00 000 0111 4677
Q ss_pred HHHHhhccCCeEEEEEe
Q 014708 332 EAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 332 ~~i~~~LkpgG~l~~~t 348 (420)
+.=++-|+|||++++..
T Consensus 221 ~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 221 RARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHHhccCcEEEEEE
Confidence 77788899999999874
No 299
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.22 E-value=0.65 Score=38.97 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=59.3
Q ss_pred CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE--cChhhhhhhhhccCCCeEeEEEEeCCCCCCC
Q 014708 240 GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLILVSIQCPNPDFN 317 (420)
Q Consensus 240 G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~--~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k 317 (420)
|-|..++.+|+... .+++++|.++..++.+++ .|...+ +-. .|..+.+.+.. ....+|.++-.-..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~~~-~~~~~~~~~~~i~~~~--~~~~~d~vid~~g~---- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGADHV-IDYSDDDFVEQIRELT--GGRGVDVVIDCVGS---- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTESEE-EETTTSSHHHHHHHHT--TTSSEEEEEESSSS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccccc-cccccccccccccccc--ccccceEEEEecCc----
Confidence 46889999999986 999999999998887755 342221 111 12222223332 23578988665222
Q ss_pred CcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 318 RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 318 ~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+..++...++|+|+|++.+..
T Consensus 69 ----------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 ----------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp ----------HHHHHHHHHHEEEEEEEEEES
T ss_pred ----------HHHHHHHHHHhccCCEEEEEE
Confidence 378899999999999999864
No 300
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.07 E-value=0.38 Score=44.35 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHH
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 272 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~ 272 (420)
++.+|||-=||+|..+.+..+. +.+++|+|+++..++.|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 5899999999999998887766 6789999999999998864
No 301
>PRK13699 putative methylase; Provisional
Probab=90.96 E-value=0.59 Score=44.21 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS 277 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~ 277 (420)
.+.+|||-=||+|..+++..+. +.+++|+|+++...+.|.+++.+.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 5789999999999999887766 789999999999999999988653
No 302
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.36 E-value=1 Score=39.56 Aligned_cols=62 Identities=27% Similarity=0.296 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~ 292 (420)
+....+|+|+|.|.+.+..|+.. -.+-+|+|+++-.+..++-.+-+.|.. ..+|.+-|+-..
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 35679999999999999988773 457899999999999999888888864 588888888665
No 303
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.60 E-value=1.2 Score=44.60 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=60.7
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..|+=+|+| -|..++.+|+..- .+|+++|+|++-.+.|++. |.. .++.. |.... .. . .+.+|.++
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~-~~-~---~~~~d~ii 234 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GAD--HVINSSDSDAL-EA-V---KEIADAII 234 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhh-HH-h---HhhCcEEE
Confidence 5566666655 6778899999764 9999999999988888664 322 22222 22221 11 1 22388887
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
..-+ + .-+....+.|++||++.+.
T Consensus 235 ~tv~-~--------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 235 DTVG-P--------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ECCC-h--------------hhHHHHHHHHhcCCEEEEE
Confidence 7644 3 4667888999999999885
No 304
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=89.45 E-value=3.5 Score=39.53 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=62.3
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-----CCC-cEEEEEcChhhhhhhhhccCCCe-
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-----GIT-NGYFIATNATSTFRSIVASYPGK- 303 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-----~l~-nv~~~~~Da~~~~~~~~~~~~~~- 303 (420)
...|||+|.|+|--++..|.. ...+|+--|...... ....+...+ ++. ++.....+..+.....+ ....
T Consensus 87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~-~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~--~~~~~ 162 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVE-NLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF--RLPNP 162 (248)
T ss_pred ceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHH-HHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh--ccCCc
Confidence 467999999999777766664 467788777654333 222222221 111 23333322222211111 1223
Q ss_pred EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
+|.|... |++....+. ..++..++..|..++.+++.+.
T Consensus 163 ~Dlilas--Dvvy~~~~~------e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILAS--DVVYEEESF------EGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEe--eeeecCCcc------hhHHHHHHHHHhcCCeEEEEEe
Confidence 8888765 666544433 3788888999999998888774
No 305
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=88.85 E-value=1.5 Score=38.59 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=54.6
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
.-|||+|-|+|..=-+|-+.+|+..++.+|.--..--. .-.+.=.++.+|+.+.++. .+........++..+
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~-------~~P~~~~~ilGdi~~tl~~-~~~~g~~a~laHaD~ 101 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPS-------STPPEEDLILGDIRETLPA-LARFGAGAALAHADI 101 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GG-------G---GGGEEES-HHHHHHH-HHHH-S-EEEEEE--
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCC-------CCCchHheeeccHHHHhHH-HHhcCCceEEEEeec
Confidence 56999999999999999999999999999964221100 0111235889999988765 211244555555542
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
-... + .+.-.+...+-..+..+|.|||.++-
T Consensus 102 G~g~---~-~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 102 GTGD---K-EKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp --S----H-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCC---c-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 1111 1 11111122344567889999998863
No 306
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=88.81 E-value=2.3 Score=40.83 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=81.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCC------------CeEEEEeCChHHHHHHHH--------------------------
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKD------------LNFLGLEVNGKLVTHCRD-------------------------- 272 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~------------~~viGiDis~~~i~~A~~-------------------------- 272 (420)
...|+|+|.|+|.....+-+.+++ .+++.++.++-.-.....
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 578999999999987776665443 358888877543322221
Q ss_pred HhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014708 273 SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 352 (420)
Q Consensus 273 ~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~ 352 (420)
++...|.-++.++.+|+...++..-..-+ .+|..+..-..| .+.+ .+-+++++..+++..+|||++.- . .
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~-~~dAwflDgFsP---~kNP--~mW~~e~l~~~a~~~~~~~~l~t--~--s 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRP-GTDAWFLDGFRP---VKNP--EMWEDELLNLMARIPYRDPTLAT--F--A 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCccccccc-CccEEecCCccc---cCCh--hhccHHHHHHHHhhcCCCCceec--h--H
Confidence 11112445688899999877543211011 577776542222 2222 23356999999999999999863 2 2
Q ss_pred HHHHHHHHHHHcCCcee
Q 014708 353 VMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 353 ~~~~~~~~l~~~g~~~~ 369 (420)
..-.+++-+.+.|+...
T Consensus 209 sA~~vRr~L~~aGF~v~ 225 (252)
T COG4121 209 AAIAVRRRLEQAGFTVE 225 (252)
T ss_pred HHHHHHHHHHHcCceee
Confidence 34567888999998753
No 307
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.32 E-value=0.71 Score=46.07 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=62.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
...+||+|.|.|.-+.++-..+|+. .++-+|.|+..-+..-.-++.-..+....-..|...- ..-++ +...++.+++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d-Rl~lp-~ad~ytl~i~ 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED-RLSLP-AADLYTLAIV 191 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh-ccCCC-ccceeehhhh
Confidence 4569999999999998888889987 4777777775444433332221111111111111111 00122 3456777765
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
. |....+...+ -+ ...++.+...+.|||.|++.
T Consensus 192 ~--~eLl~d~~ek--~i-~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 192 L--DELLPDGNEK--PI-QVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred h--hhhccccCcc--hH-HHHHHHHHHhccCCCeEEEE
Confidence 4 2211111111 01 14889999999999999886
No 308
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.10 E-value=2.5 Score=42.57 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=65.5
Q ss_pred CEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEEE
Q 014708 232 PLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 232 ~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
..++=+|||. |..++.+|+......++.+|.++..++.|++.... .-+..... +........- ...-+|.++-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---~~~~~~~~~~~~~~~~~~t--~g~g~D~vie 244 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---DVVVNPSEDDAGAEILELT--GGRGADVVIE 244 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---eEeecCccccHHHHHHHHh--CCCCCCEEEE
Confidence 3899999997 67778889999999999999999999999874321 11111111 2211111111 1235788765
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.--. +..+.++.+.++|||.+.+..
T Consensus 245 ~~G~--------------~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 245 AVGS--------------PPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred CCCC--------------HHHHHHHHHHhcCCCEEEEEe
Confidence 4222 257889999999999998863
No 309
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.74 E-value=4.7 Score=43.78 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=63.6
Q ss_pred CCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEEEeCCCCC
Q 014708 239 SGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPD 315 (420)
Q Consensus 239 cG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~~~fpdp~ 315 (420)
||.|.++..+++. ..+..|+.+|.+++.++.+++ . +...+.+|+.+. +.+.. .-...|.+.+..+|+.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~--~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQL--ELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCH--HHHHhcCCccCCEEEEEeCCHH
Confidence 6777888777765 346789999999999887754 2 356889999874 22211 2245677777766652
Q ss_pred CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014708 316 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 353 (420)
Q Consensus 316 ~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~ 353 (420)
.+ ..+-...+.+.|.-.++.++.++..
T Consensus 477 ----------~n-~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 477 ----------DT-MKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred ----------HH-HHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 11 2334456678899999988866554
No 310
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=87.70 E-value=4.7 Score=39.15 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=87.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+..|+=+| -.-.+++++|-..-...+.-+||++..+..-.+-+++.|++|+..+.-|+.+-+++.+ ...||.+..
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~---~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL---KRKFDVFIT 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH---HhhCCeeec
Confidence 467788888 5555666666665456899999999999999999999999999999999988766544 467888755
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCC---eEEEEEeCcHHH--HHHHHH-HHHHcCCc
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFLQSDIEEV--MLRMKQ-QFLEYGKG 367 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg---G~l~~~td~~~~--~~~~~~-~l~~~g~~ 367 (420)
||---- .. -+.|+.+=...||-- |+|.+..-..+. +.++++ +..+.|+-
T Consensus 228 ---DPpeTi--~a----lk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 228 ---DPPETI--KA----LKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV 282 (354)
T ss_pred ---CchhhH--HH----HHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence 442000 00 035777667778766 899987543333 334666 45666643
No 311
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=86.82 E-value=0.59 Score=47.69 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCC--CcEEEEEcChhhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI--TNGYFIATNATSTF 293 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l--~nv~~~~~Da~~~~ 293 (420)
.+..|.|+-||-|-+.+.+++. ++.|++-|.++++++....++..+.+ .++..+..|+..++
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 4789999999999999999988 59999999999999999999877665 36999999999886
No 312
>PHA01634 hypothetical protein
Probab=86.67 E-value=1.8 Score=37.12 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS 277 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~ 277 (420)
.+.+|+|||.+-|..++.++.+. ...|+++|.++...+..++++...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhh
Confidence 47899999999999999998774 568999999999999998887654
No 313
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=85.71 E-value=1.5 Score=43.22 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=46.5
Q ss_pred EEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChh
Q 014708 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNAT 290 (420)
Q Consensus 234 vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~ 290 (420)
=+|||+|.-++--.+..+.-++.++++|++...+..|.++..+++++ .+..++.+..
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ 163 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQ 163 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecch
Confidence 48999999888777765555799999999999999999999988875 4667766553
No 314
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=85.09 E-value=15 Score=34.36 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCccH--HHHH--HHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChh-hhhhhhhccCCCe
Q 014708 230 AQPLVVDIGSGNGL--FLLG--MARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNAT-STFRSIVASYPGK 303 (420)
Q Consensus 230 ~~~~vLDIGcG~G~--~~~~--lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~-~~~~~~~~~~~~~ 303 (420)
+..+++|+.|+-|. .++. .|.++.+.+++.|-..+..+...++.+...++.+ +.|+.+|.. ++++.+ ..
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-----~~ 115 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-----KG 115 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-----cC
Confidence 56889999777543 3444 4556888999999999888878888877778766 699999854 443321 24
Q ss_pred EeEEEEe
Q 014708 304 LILVSIQ 310 (420)
Q Consensus 304 ~d~i~~~ 310 (420)
+|.+.+.
T Consensus 116 iDF~vVD 122 (218)
T PF07279_consen 116 IDFVVVD 122 (218)
T ss_pred CCEEEEe
Confidence 7777664
No 315
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=85.03 E-value=5.9 Score=39.69 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=16.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK 251 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~ 251 (420)
..-+|+|+||.+|..++.+...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHHH
Confidence 3568999999999998877653
No 316
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=83.67 E-value=2 Score=41.52 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-----CCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTF 293 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-----P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~ 293 (420)
+...++|+|||.|.++..+++.. +...++.||...... ++-.+...... ..+.=++.|+.++.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 35789999999999999999987 567999999876544 23333332221 24666777887763
No 317
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=83.19 E-value=12 Score=36.32 Aligned_cols=95 Identities=12% Similarity=0.147 Sum_probs=59.5
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-ChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..+|..||| .|..++.+|+.. +.+++.++.++...+.+++ .+...+...+. +....+ ... ....+|.++
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~--~~~~~D~vi 237 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG--LGGGFDVIF 237 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh--cCCCceEEE
Confidence 5567778887 488888899886 5779999999988776643 34432211111 111111 111 345688765
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-. ... ...++.+.+.|+++|.++..
T Consensus 238 d~-~g~-------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 238 DF-VGT-------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EC-CCC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 42 111 25778889999999999865
No 318
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.11 E-value=12 Score=40.19 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=67.8
Q ss_pred CCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhcc-CCCeEeEEEEeCCCCC
Q 014708 239 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPD 315 (420)
Q Consensus 239 cG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~-~~~~~d~i~~~fpdp~ 315 (420)
||.|.++..+++.. .+..++.+|.+++.++.+++ . +...+++|+.+- +.+.. .-+..|.+.+..+|..
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~--~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANE--EIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCH--HHHHhcCccccCEEEEEcCChH
Confidence 67777888887762 35789999999998877753 2 467899999874 22210 2246777776655542
Q ss_pred CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014708 316 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 316 ~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~ 368 (420)
.+ ..+-...+.+.|+-.++.+.++++. .+.+++.|...
T Consensus 494 ----------~~-~~iv~~~~~~~~~~~iiar~~~~~~----~~~l~~~Gad~ 531 (558)
T PRK10669 494 ----------EA-GEIVASAREKRPDIEIIARAHYDDE----VAYITERGANQ 531 (558)
T ss_pred ----------HH-HHHHHHHHHHCCCCeEEEEECCHHH----HHHHHHcCCCE
Confidence 11 2233345666788888888866543 33456667554
No 319
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.08 E-value=12 Score=37.22 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=73.6
Q ss_pred EEEEcCCccHHHHHHHHhCCCCe-EEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCC
Q 014708 234 VVDIGSGNGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 312 (420)
Q Consensus 234 vLDIGcG~G~~~~~lA~~~P~~~-viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fp 312 (420)
|+|+-||-|.+...+-+. ..+ +.++|+++.+++.-+.|.. + .++++|+.++....+ ..+|.++..+|
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~----~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDI----PDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhC----CCcCEEEecCC
Confidence 589999999999888766 344 5679999999888777642 3 456788888742222 24788877654
Q ss_pred -CCCCCCcc------hhhhhhHHHHHHHHHhhccCCeEEEEEe-------CcHHHHHHHHHHHHHcCCcee
Q 014708 313 -NPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 313 -dp~~k~~~------~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-------d~~~~~~~~~~~l~~~g~~~~ 369 (420)
.++..... .+..++ ..+++.+ +.++|. .++++- +....+..+++.|+..|+...
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~-~~~~r~i-~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~ 136 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLF-FEIVRIL-KEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVY 136 (315)
T ss_pred CcccchhcccCCCCCchhhHH-HHHHHHH-hhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEE
Confidence 33322211 111222 2344333 445775 444541 112345677888888887653
No 320
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=82.25 E-value=1.7 Score=41.61 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=35.6
Q ss_pred CCEEEEEcCCccHHHHHHHHhC----C----CCeEEEEeCChHHHHHHHHHhHH
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR----K----DLNFLGLEVNGKLVTHCRDSLQL 276 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~----P----~~~viGiDis~~~i~~A~~~~~~ 276 (420)
...|+|+|.|+|.++..+.+.. | ..+|+-||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3689999999999998887753 3 35899999999998887777654
No 321
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=81.06 E-value=3.8 Score=41.27 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=40.5
Q ss_pred cccCCCCCCEEEEEcCCccHHHHHHHHh----CC----CCeEEEEeCChHHHHHHHHHhHH
Q 014708 224 AAYHDPAQPLVVDIGSGNGLFLLGMARK----RK----DLNFLGLEVNGKLVTHCRDSLQL 276 (420)
Q Consensus 224 ~~f~~~~~~~vLDIGcG~G~~~~~lA~~----~P----~~~viGiDis~~~i~~A~~~~~~ 276 (420)
+.++.|.+-.++|||.|.|.++..+.+. +| ...|.-||.|++..++=+++++.
T Consensus 71 q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 71 QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3455555567999999999999887664 45 67899999999987766665543
No 322
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=80.70 E-value=3 Score=41.12 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHH
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTH 269 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~ 269 (420)
..+.||==|||.|.++..||...+.+ -|=|.|--|+-.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~--qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKC--QGNEFSYFMLIC 187 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccc--cccHHHHHHHHH
Confidence 36889999999999999999996554 466888777643
No 323
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=79.97 E-value=15 Score=40.09 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=60.1
Q ss_pred CEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeEEE
Q 014708 232 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS 308 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~i~ 308 (420)
..++=+|| |.++..+++. ..+..++.+|.+++.++.+++ . +...+.+|+.+. +.+. ..-+..+.+.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~--~~L~~agi~~A~~vv 469 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----F---GMKVFYGDATRM--DLLESAGAAKAEVLI 469 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----c---CCeEEEEeCCCH--HHHHhcCCCcCCEEE
Confidence 34554554 5565555553 236789999999999888755 2 356789999875 2221 0224567777
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHH
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 352 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~ 352 (420)
+..+|+. .+ ..+-...+.+.|+-.++.++.+..
T Consensus 470 v~~~d~~----------~n-~~i~~~ar~~~p~~~iiaRa~d~~ 502 (621)
T PRK03562 470 NAIDDPQ----------TS-LQLVELVKEHFPHLQIIARARDVD 502 (621)
T ss_pred EEeCCHH----------HH-HHHHHHHHHhCCCCeEEEEECCHH
Confidence 7666653 11 233345556677777777765544
No 324
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=77.95 E-value=14 Score=32.72 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=62.1
Q ss_pred EcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCC
Q 014708 237 IGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 314 (420)
Q Consensus 237 IGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp 314 (420)
||+ |..+..+|++ .....+++.|.+++..+...+. + ++ .+.+..+.. ...|.|++..||+
T Consensus 7 IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g---~~-~~~s~~e~~--------~~~dvvi~~v~~~ 68 (163)
T PF03446_consen 7 IGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G---AE-VADSPAEAA--------EQADVVILCVPDD 68 (163)
T ss_dssp E----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T---EE-EESSHHHHH--------HHBSEEEE-SSSH
T ss_pred Ech--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h---hh-hhhhhhhHh--------hcccceEeecccc
Confidence 555 5666666665 2468999999999776655432 2 22 334554442 2348888876665
Q ss_pred CCCCcchhhhhhHHHHHHH--HHhhccCCeEEEEE-eCcHHHHHHHHHHHHHcCCcee
Q 014708 315 DFNRPEHRWRMVQRSLVEA--VSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 315 ~~k~~~~k~Rl~~~~~l~~--i~~~LkpgG~l~~~-td~~~~~~~~~~~l~~~g~~~~ 369 (420)
- .-.+++.. +...|++|..++-. |-.+....++.+.+.+.|...+
T Consensus 69 ~----------~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 69 D----------AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp H----------HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred h----------hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 2 11255566 77788888776644 3456667778888888886544
No 325
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.24 E-value=8.2 Score=39.43 Aligned_cols=64 Identities=8% Similarity=0.036 Sum_probs=48.3
Q ss_pred HhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 276 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 276 ~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+.++.+++++++++.+.+... +++++|.+.+.-.--|+... .-.+.+..+.+.++|||++++.+
T Consensus 271 r~~~drv~i~t~si~~~L~~~---~~~s~~~~vL~D~~Dwm~~~------~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 271 RARLDRVRIHTDSIEEVLRRL---PPGSFDRFVLSDHMDWMDPE------QLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred hcCCCeEEEEeccHHHHHHhC---CCCCeeEEEecchhhhCCHH------HHHHHHHHHHHHhCCCCEEEEee
Confidence 456688999999999986542 48899998776333344331 12478899999999999999987
No 326
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=76.02 E-value=41 Score=27.39 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=67.9
Q ss_pred EEEEcCCccHHH--HHHHHhCCCCeEEE-EeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 234 VVDIGSGNGLFL--LGMARKRKDLNFLG-LEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 234 vLDIGcG~G~~~--~~lA~~~P~~~viG-iDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+.=||||+-... ..+.+..|+..++| +|.+++..+.+. ++.+.+ ...|..+++. +..+|.|++.
T Consensus 3 v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~---~~~~~~----~~~~~~~ll~------~~~~D~V~I~ 69 (120)
T PF01408_consen 3 VGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFA---EKYGIP----VYTDLEELLA------DEDVDAVIIA 69 (120)
T ss_dssp EEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH---HHTTSE----EESSHHHHHH------HTTESEEEEE
T ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHH---HHhccc----chhHHHHHHH------hhcCCEEEEe
Confidence 556888765332 23444458888775 688887666553 344543 6677777642 3479999998
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE---eCcHHHHHHHHHHHHHcCCc
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~---td~~~~~~~~~~~l~~~g~~ 367 (420)
-|+.. -...+.++|+.|-.++++ +.+....+++.+..++++..
T Consensus 70 tp~~~--------------h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 70 TPPSS--------------HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp SSGGG--------------HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred cCCcc--------------hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 55532 223455667777788886 33556667788888877654
No 327
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=75.97 E-value=14 Score=39.10 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=69.7
Q ss_pred CCEEEEEcCCccHHHHHHHHhC----CCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR----KDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKL 304 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~----P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~ 304 (420)
...+.|..||+|.++....+.. ....++|-|....+...|+.+..-++.. +....++|-..- +++. ....+
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~-~d~~--~~~~~ 294 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTT-KEWE--NENGF 294 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCC-cccc--ccccC
Confidence 3578999999999998765432 2256999999999999999886555542 334444444332 1122 23557
Q ss_pred eEEEEeCCCC--CCCCc-ch--h--hh----------hhHHHHHHHHHhhccCCeEEEE
Q 014708 305 ILVSIQCPNP--DFNRP-EH--R--WR----------MVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 305 d~i~~~fpdp--~~k~~-~~--k--~R----------l~~~~~l~~i~~~LkpgG~l~~ 346 (420)
|.+..+-|.. |.... .+ + ++ --...|+......|++||+..+
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 8887763322 21110 00 0 00 0125788889999999997544
No 328
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=74.83 E-value=5.1 Score=40.62 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=36.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHH
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 272 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~ 272 (420)
-+.++|+|.|.|....-|+-.+ +..|.+||-|....++|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 5779999999999999999887 7899999999877777765
No 329
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=74.82 E-value=11 Score=34.28 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=60.7
Q ss_pred EEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHh------------HHhC-CCcEEEEEcChhhhhhhhhccCC
Q 014708 235 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL------------QLSG-ITNGYFIATNATSTFRSIVASYP 301 (420)
Q Consensus 235 LDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~------------~~~~-l~nv~~~~~Da~~~~~~~~~~~~ 301 (420)
.=+|.|.=....+++-..-+.+|+|+|++++.++..++-. .+.. -.|+++. .|.... -
T Consensus 4 ~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a--------i 74 (185)
T PF03721_consen 4 AVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA--------I 74 (185)
T ss_dssp EEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH--------H
T ss_pred EEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh--------h
Confidence 3355554333322222233689999999999887665310 0000 1233332 222221 1
Q ss_pred CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCc-HHHHH-HHHHHHHHcC
Q 014708 302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVML-RMKQQFLEYG 365 (420)
Q Consensus 302 ~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~-~~~~~-~~~~~l~~~g 365 (420)
...|.+++..|.|...+....-+.+ ...++.+.+.|+++-.++++|-. +..-+ .+...+++.+
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v-~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYV-ESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHH-HHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hccceEEEecCCCccccCCccHHHH-HHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 2468888888888644333222222 37889999999999988887632 33333 3555666654
No 330
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=74.71 E-value=7.5 Score=38.95 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHH-------HHHHhHHhCCCc--EEEEEcChhhhhhhhhccC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTH-------CRDSLQLSGITN--GYFIATNATSTFRSIVASY 300 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~-------A~~~~~~~~l~n--v~~~~~Da~~~~~~~~~~~ 300 (420)
++.+|.|==-|||.+++.-|.- ++.|+|.||+-.++.. .+.|..+.|... +.++.+|...- .+- .
T Consensus 208 pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~--~~r--s 281 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP--PLR--S 281 (421)
T ss_pred CCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc--chh--h
Confidence 4789999999999999987754 7899999999988862 234566666432 66677776542 111 2
Q ss_pred CCeEeEEEEeCCCCC---------------------------CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 301 PGKLILVSIQCPNPD---------------------------FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~---------------------------~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
...||.|.+. .|+ |...+...-.+-..+|.-.++.|..||++.+-.
T Consensus 282 n~~fDaIvcD--PPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 282 NLKFDAIVCD--PPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cceeeEEEeC--CCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 4578988763 222 011111111122577888899999999998853
No 331
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.48 E-value=16 Score=36.39 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC--hhhhhhhhhcc--CCCeE
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN--ATSTFRSIVAS--YPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D--a~~~~~~~~~~--~~~~~ 304 (420)
.+..+|=+|+|. |..+...|+.+-..+++.+|+++..++.|++ .|.+.+...... ...+ .+.+.. ....+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~-~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQEL-AELVEKALGKKQP 243 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHH-HHHHHhhccccCC
Confidence 468899999997 6667777888988999999999999999987 344332222221 1221 111110 11234
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
|..+- ++-- ..-++.....+++||.+.+.
T Consensus 244 d~~~d-CsG~-------------~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 244 DVTFD-CSGA-------------EVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred CeEEE-ccCc-------------hHHHHHHHHHhccCCEEEEe
Confidence 54432 1111 14567778899999997764
No 332
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=74.21 E-value=28 Score=32.25 Aligned_cols=97 Identities=14% Similarity=0.235 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+..+|-.|+|+ |..++.+++.. +.++++++.+++..+.+++ .+..++ .....+....+. . .....+|.+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~--~~~~~~d~v 205 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-L--TGGGGADVV 205 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-H--hcCCCCCEE
Confidence 467899999996 77788888875 4899999999887766643 232221 111111111101 1 124568888
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+-....+ ..+..+.+.|+++|.++...
T Consensus 206 i~~~~~~--------------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 206 IDAVGGP--------------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EECCCCH--------------HHHHHHHHhcccCCEEEEEc
Confidence 6543221 45667788999999998754
No 333
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=74.08 E-value=2.8 Score=34.95 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHhhccCCeEEEEEe-CcHHHH
Q 014708 328 RSLVEAVSDLLVHDGKVFLQS-DIEEVM 354 (420)
Q Consensus 328 ~~~l~~i~~~LkpgG~l~~~t-d~~~~~ 354 (420)
..|++.+++.|+|||.|+++. .|..|.
T Consensus 24 ~~~f~~~~~~L~pGG~lilEpQ~w~sY~ 51 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILILEPQPWKSYK 51 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEEE---HHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEeCCCcHHHH
Confidence 479999999999999999985 455553
No 334
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=74.01 E-value=1.8 Score=42.47 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCccHHHH-HHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC-cEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNGLFLL-GMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~-~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~-nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
++..|+|+=.|-|.|+. .|... ....|+++|++|.+++..+++++.++.. ..+++.+|-... -+....|.|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~------~~~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP------KPRLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc------Cccccchhe
Confidence 46789999999999999 44443 4679999999999999999998876532 233333443322 246778888
Q ss_pred EEe
Q 014708 308 SIQ 310 (420)
Q Consensus 308 ~~~ 310 (420)
.+.
T Consensus 267 nLG 269 (351)
T KOG1227|consen 267 NLG 269 (351)
T ss_pred eec
Confidence 775
No 335
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.44 E-value=27 Score=34.57 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=55.4
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..||=+||| .|..++.+|+..-..+++++|.+++.++.+++ .|...+ ..-..|..+. .. ..+.+|.++
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~----~~-~~g~~D~vi 240 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHY----KA-EKGYFDVSF 240 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHH----hc-cCCCCCEEE
Confidence 5567767875 24456667777533479999999998877754 343221 1111122111 11 123477775
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-.... +..+....+.|++||++.+.
T Consensus 241 d~~G~--------------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGH--------------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCC--------------HHHHHHHHHHhhcCCEEEEE
Confidence 43211 25677788999999999875
No 336
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=73.26 E-value=6.8 Score=33.90 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=26.9
Q ss_pred EEcCCcc--HHHHHHH--HhCCCCeEEEEeCChHHHHHHHHH
Q 014708 236 DIGSGNG--LFLLGMA--RKRKDLNFLGLEVNGKLVTHCRDS 273 (420)
Q Consensus 236 DIGcG~G--~~~~~lA--~~~P~~~viGiDis~~~i~~A~~~ 273 (420)
|||+..| .....++ ...|...++++|.++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666654 457899999999999999999888
No 337
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.05 E-value=40 Score=34.73 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=47.9
Q ss_pred CEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 232 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
..++=+|| |.++..+++.. -+..++.+|.+++.++..++.. .++.++.+|+.+. ..+-...-...|.+++
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~-~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQ-ELLEEEGIDEADAFIA 303 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCH-HHHHhcCCccCCEEEE
Confidence 45666666 77777777663 3578999999999887765532 3567889999764 2111112345777777
Q ss_pred eCCC
Q 014708 310 QCPN 313 (420)
Q Consensus 310 ~fpd 313 (420)
..++
T Consensus 304 ~~~~ 307 (453)
T PRK09496 304 LTND 307 (453)
T ss_pred CCCC
Confidence 6554
No 338
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.60 E-value=6.2 Score=40.03 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
.+..|+|.+|-.|.-++++|.-. +...+.|+|.+.+..+..++.+...|.+++...++|....
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 46899999999999999999884 4789999999999999999999889999988889888763
No 339
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=72.00 E-value=19 Score=33.27 Aligned_cols=106 Identities=15% Similarity=0.221 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-hhhhccCCCeE
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-RSIVASYPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-~~~~~~~~~~~ 304 (420)
.+.+|+|+|.-.|..++-.|.. --...|+++||+-..+..+... .+.+.|++++-.+.. -+.+....+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 4678999999999988877764 2247899999998776655443 568999999887641 00010012233
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
..|++. -|.- .++.+-| .-|+.+..+|..|-++++.
T Consensus 144 ~kIfvi-lDsd---Hs~~hvL---Ael~~~~pllsaG~Y~vVe 179 (237)
T COG3510 144 PKIFVI-LDSD---HSMEHVL---AELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred CcEEEE-ecCC---chHHHHH---HHHHHhhhHhhcCceEEEe
Confidence 355443 1322 1222222 5677788899999988875
No 340
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=71.70 E-value=54 Score=33.68 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=70.6
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-------cCC---
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-------SYP--- 301 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-------~~~--- 301 (420)
.+|-=||-|.=.+..+.+-.-.+..|+|+||++..++...+ | ...+..-+....+.+... +..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G--~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l 82 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G--ESYIEEPDLDEVVKEAVESGKLRATTDPEEL 82 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C--cceeecCcHHHHHHHHHhcCCceEecChhhc
Confidence 55666666654443332222236789999999998876532 2 123333333332211110 001
Q ss_pred CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-cHHHHHHHHHHHHH
Q 014708 302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFLE 363 (420)
Q Consensus 302 ~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-~~~~~~~~~~~l~~ 363 (420)
...|.+.+..|.|.-+.+.+.--.+ ....+.+...|++|-.+++++- .+..-+++...+.+
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v-~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYV-ESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHH-HHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 2568888888999855444432222 3667889999999999999853 23334455554444
No 341
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=71.36 E-value=16 Score=38.72 Aligned_cols=100 Identities=10% Similarity=0.171 Sum_probs=69.9
Q ss_pred CCEEEEEcCCccHHHHHH---HHh-CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 231 QPLVVDIGSGNGLFLLGM---ARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~l---A~~-~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
..+|+=+|.|-|-+.-.. |+. .....++++|.+|.++...+.+ ..... ..|+++..|++.+.. +....|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~DMR~w~a-----p~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSDMRKWNA-----PREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEeccccccCC-----chhhcc
Confidence 357888999999885443 222 4467899999999999877653 22233 459999999998721 235677
Q ss_pred EEEE----eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 306 LVSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 306 ~i~~----~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
.+.. .|-|- -++|+-|.-+-+.|||+|..+=
T Consensus 442 I~VSELLGSFGDN----------ELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 442 IIVSELLGSFGDN----------ELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chHHHhhccccCc----------cCCHHHHHHHHhhcCCCceEcc
Confidence 6632 23232 2567999999999999987654
No 342
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=70.66 E-value=37 Score=33.75 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=56.3
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..||=.|||. |..++.+|+...-.+++++|.++...+.+++ .|... +.....|..+.+.+.. ....+|.++
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~--~~~g~d~vi 250 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT--GGFGADVVI 250 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh--CCCCCCEEE
Confidence 56777778754 5566778887633359999999998877743 34321 1111122222111111 223477765
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-.-.. +..+....+.|++||++.+.
T Consensus 251 d~~g~--------------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 251 DAVGR--------------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ECCCC--------------HHHHHHHHHHhccCCEEEEE
Confidence 32111 24567778899999998864
No 343
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=69.75 E-value=83 Score=32.19 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=61.5
Q ss_pred EEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH---hCC------CcEEEEE-cChhhhhhhhhccCCCeE
Q 014708 236 DIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL---SGI------TNGYFIA-TNATSTFRSIVASYPGKL 304 (420)
Q Consensus 236 DIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~---~~l------~nv~~~~-~Da~~~~~~~~~~~~~~~ 304 (420)
=||+| -|.-+..+... ..+|+|+|++++.++..++.... .++ .+.++.. .|..+. ....
T Consensus 5 VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~--------~~~a 74 (388)
T PRK15057 5 ISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA--------YRDA 74 (388)
T ss_pred EECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh--------hcCC
Confidence 35665 34333333222 57899999999999887652110 000 1122221 111111 1346
Q ss_pred eEEEEeCCCCCCCCc-chhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHHHHcC
Q 014708 305 ILVSIQCPNPDFNRP-EHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEYG 365 (420)
Q Consensus 305 d~i~~~fpdp~~k~~-~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l~~~g 365 (420)
|.|++..|+|...+. ......+ .+.++.+.+ +++|..++.+| =.+...+++.+.+.+.+
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v-~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~ 135 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSV-ESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTEN 135 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHH-HHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCc
Confidence 888888888853221 1111111 245577777 78887777664 33445566666665543
No 344
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=69.23 E-value=52 Score=32.75 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=78.4
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
...++|+-||-|.+..-+.+.. ---+.++|+++.+++.-+.|.. .-.+++.|......+.+. ...+|.+.-.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~-----~~~~~~~di~~~~~~~~~--~~~~DvligG 74 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFP-----HGDIILGDIKELDGEALR--KSDVDVLIGG 74 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCC-----CCceeechHhhcChhhcc--ccCCCEEEeC
Confidence 5679999999999998887774 2358899999999887766643 246777888776433221 1168888776
Q ss_pred CCCCCCCCc-------chhhhhhHHHHHHHHHhhccCCeEEEEEe------CcHHHHHHHHHHHHHcCCc
Q 014708 311 CPNPDFNRP-------EHRWRMVQRSLVEAVSDLLVHDGKVFLQS------DIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 311 fpdp~~k~~-------~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t------d~~~~~~~~~~~l~~~g~~ 367 (420)
+|=+-+... .++..|+ -++ .++...++| -.|+++- .....++.+.+.|++.|+.
T Consensus 75 pPCQ~FS~aG~r~~~~D~R~~L~-~~~-~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 75 PPCQDFSIAGKRRGYDDPRGSLF-LEF-IRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CCCcchhhcCcccCCcCccceee-HHH-HHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 542222111 1222232 133 345556778 5555541 1122456788889999885
No 345
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=68.59 E-value=43 Score=32.77 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=56.1
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..||-.|+| .|..++.+|+......+++++.++...+.+++ .+... +.....+..+.+.... ....+|.++
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~--~~~~~d~vl 241 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT--GGRGVDCVI 241 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc--CCCCCcEEE
Confidence 4566667876 47788888988643478899888877666543 23211 1111112212111111 235678775
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-.. .. ...+....+.|+++|++...
T Consensus 242 d~~-g~-------------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 242 EAV-GF-------------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred Ecc-CC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 321 11 14677888999999998754
No 346
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=66.58 E-value=93 Score=32.07 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=66.3
Q ss_pred EEEEEcCCccHHHHH--HHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhh-------ccCCCe
Q 014708 233 LVVDIGSGNGLFLLG--MARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-------ASYPGK 303 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~--lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~-------~~~~~~ 303 (420)
.|.=||.|.-...+. |+++ +.+|+|+|++++.++..+ .|. +.+...+...++.+.. ......
T Consensus 5 kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~-----~g~--~~~~e~~l~~~l~~~~~~g~l~~~~~~~~ 75 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTIN-----RGE--IHIVEPDLDMVVKTAVEGGYLRATTTPEP 75 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHH-----CCC--CCcCCCCHHHHHHHHhhcCceeeeccccc
Confidence 466677775444333 3433 578999999999877532 111 1122222222211000 001124
Q ss_pred EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-cHHHHHHHHHHHHHc
Q 014708 304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFLEY 364 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-~~~~~~~~~~~l~~~ 364 (420)
.|.|++..|+|.-.+....-+.+ ...++.+.+.|++|-.++..|- .+...+.+...+.+.
T Consensus 76 aDvvii~vptp~~~~~~~dl~~v-~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 76 ADAFLIAVPTPFKGDHEPDLTYV-EAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCEEEEEcCCCCCCCCCcChHHH-HHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 68888888888533322221112 3567888999999888877653 344555566656554
No 347
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=66.37 E-value=46 Score=34.53 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=58.4
Q ss_pred CEEEEEcCCccHHHHHHHHhC-CCCeEEEEeCChHHHHHHHHHhH---HhC------CCcEEEEEcChhhhhhhhhccCC
Q 014708 232 PLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQ---LSG------ITNGYFIATNATSTFRSIVASYP 301 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~-P~~~viGiDis~~~i~~A~~~~~---~~~------l~nv~~~~~Da~~~~~~~~~~~~ 301 (420)
..|-=||. |..+..+|... ...+|+|+|+++..++..++-.. +.+ ..++.+ ..+... -
T Consensus 7 mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~~~---------~ 74 (425)
T PRK15182 7 VKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEIEK---------I 74 (425)
T ss_pred CeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCHHH---------H
Confidence 44555655 55666555552 24789999999999877652211 000 011122 122211 1
Q ss_pred CeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 302 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 302 ~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
...|.+++..|+|...+.+..-+.+ ....+.+...|++|..++..|
T Consensus 75 ~~advvii~Vptp~~~~~~~dl~~v-~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 75 KECNFYIITVPTPINTYKQPDLTPL-IKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred cCCCEEEEEcCCCCCCCCCcchHHH-HHHHHHHHHhcCCCCEEEEec
Confidence 2468888888888633333221222 133567888999998888765
No 348
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=66.03 E-value=40 Score=33.44 Aligned_cols=93 Identities=19% Similarity=0.130 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeC---ChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEe
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEV---NGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDi---s~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d 305 (420)
.+..||=+|||. |.+++.+|+.. ..++++++. +++..+.++ +.|...+.....|..+ .. ....+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~----~~Ga~~v~~~~~~~~~-----~~-~~~~~d 240 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE----ELGATYVNSSKTPVAE-----VK-LVGEFD 240 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH----HcCCEEecCCccchhh-----hh-hcCCCC
Confidence 356778888875 66677788775 458999987 566665553 3443321111111111 00 123467
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.++-.... +..+....+.|++||.+.+.
T Consensus 241 ~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 241 LIIEATGV--------------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred EEEECcCC--------------HHHHHHHHHHccCCcEEEEE
Confidence 66543211 25678888999999998764
No 349
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.66 E-value=63 Score=33.23 Aligned_cols=96 Identities=8% Similarity=0.102 Sum_probs=57.6
Q ss_pred EEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 234 VVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 234 vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
|+=+|| |.++..+++. .-+..|+.+|.+++.++.+++. ..+.++.+|+.+. ..+-...-...|.+++..
T Consensus 3 viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~------~~~~~~~gd~~~~-~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 3 IIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR------LDVRTVVGNGSSP-DVLREAGAEDADLLIAVT 73 (453)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh------cCEEEEEeCCCCH-HHHHHcCCCcCCEEEEec
Confidence 344454 8888888875 2367899999999887665432 1477888888753 111110134678887765
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
++.. . ..++....+.+.|.-.++..+.
T Consensus 74 ~~~~----------~-n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 74 DSDE----------T-NMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred CChH----------H-HHHHHHHHHHhcCCCeEEEEEC
Confidence 5542 1 1334445556655555655553
No 350
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=65.06 E-value=49 Score=33.10 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=54.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..||=.|+|. |..++.+|+..-..+++++|.++..++.+++ .|...+ .....|..+.+.+.. .+.+|.++
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~---~~g~d~vi 264 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT---GGGVDYAF 264 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh---CCCCCEEE
Confidence 44555578753 5556667777533379999999998877754 343211 111112211111111 22577775
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-.-.. +..+....+.|+++|++++.
T Consensus 265 d~~G~--------------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 265 EMAGS--------------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred ECCCC--------------hHHHHHHHHHHhcCCEEEEE
Confidence 43111 25677778899999998864
No 351
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=64.58 E-value=42 Score=33.27 Aligned_cols=91 Identities=8% Similarity=0.010 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCcc-HHHHHHHHh-CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGNG-LFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~G-~~~~~lA~~-~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+..||=+|||.= .+++.+|++ ....+++++|.++..++.+++ .+. . .. . .++ . ....+|.+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~-~--~~~-~-----~~~g~d~v 226 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YL-I--DDI-P-----EDLAVDHA 226 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-ee-h--hhh-h-----hccCCcEE
Confidence 3678888998642 234566765 556789999999988877753 121 1 10 0 111 1 11136666
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+=.-..+ ..+..+....+.|++||++.+.
T Consensus 227 iD~~G~~-----------~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 227 FECVGGR-----------GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred EECCCCC-----------ccHHHHHHHHHhCcCCcEEEEE
Confidence 4321111 0125677888899999998764
No 352
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=64.20 E-value=88 Score=32.97 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=67.6
Q ss_pred EEEEEcCCccHHHHH--HHHhCCCCeEEEEeCChHHHHHHHHHhH---HhCC---------CcEEEEEcChhhhhhhhhc
Q 014708 233 LVVDIGSGNGLFLLG--MARKRKDLNFLGLEVNGKLVTHCRDSLQ---LSGI---------TNGYFIATNATSTFRSIVA 298 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~--lA~~~P~~~viGiDis~~~i~~A~~~~~---~~~l---------~nv~~~~~Da~~~~~~~~~ 298 (420)
.|.=||+|....... ||+..++.+|+|+|++++.++..++--. +.++ .+++| ..|..+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~------ 75 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKH------ 75 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHH------
Confidence 356678887766554 4554456889999999998876543210 0010 01211 1111111
Q ss_pred cCCCeEeEEEEeCCCCCCCCc---chhhhhh-HHHHHHHHHhhccCCeEEEEEeCc-HHHHHHHHHHHHH
Q 014708 299 SYPGKLILVSIQCPNPDFNRP---EHRWRMV-QRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLE 363 (420)
Q Consensus 299 ~~~~~~d~i~~~fpdp~~k~~---~~k~Rl~-~~~~l~~i~~~LkpgG~l~~~td~-~~~~~~~~~~l~~ 363 (420)
-...|.+++..|.|.-.+. ++.-.+- -....+.+.+.|++|-.++++|-. ....+.+...+.+
T Consensus 76 --i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 76 --VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred --HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 1235788887787753221 1111111 147788999999998888877532 3333455555554
No 353
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=63.41 E-value=35 Score=29.31 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=46.6
Q ss_pred EEEEEcCCccc--------hHHHHHHHHHHh--cCeEEEehH-----------HHHHHHHhcCCCCCCcccccCc---hH
Q 014708 9 YAAIIGGGNLC--------NKAAALHFLASR--CDGLIFVGL-----------MSFQIMHALGLPVPPELVEKGA---ND 64 (420)
Q Consensus 9 ~~~i~GG~kv~--------dki~~~~~l~~~--~d~i~~gG~-----------~a~~fl~a~g~~ig~s~~e~~~---~~ 64 (420)
.++|+||..-. ..+.---.|.++ +..|++.|+ +.-.+|..+|++-..-++|+.. .+
T Consensus 2 ~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~e 81 (150)
T cd06259 2 AIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYE 81 (150)
T ss_pred EEEEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHH
Confidence 57899998876 455555566655 888988888 3445566667654444556544 56
Q ss_pred HHHHHHHHHhhCCC
Q 014708 65 AASDLIQFARDKHI 78 (420)
Q Consensus 65 ~a~~~~~~~~~~~~ 78 (420)
.|....+.+++++.
T Consensus 82 na~~~~~~~~~~~~ 95 (150)
T cd06259 82 NARFSAELLRERGI 95 (150)
T ss_pred HHHHHHHHHHhcCC
Confidence 67776677776654
No 354
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=63.07 E-value=5 Score=37.64 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=44.1
Q ss_pred cccCCCCCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhH
Q 014708 224 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 275 (420)
Q Consensus 224 ~~f~~~~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~ 275 (420)
+.|....+...+|.=+|.|.++..+.+.+|+..++++|..|-+-+.|+-...
T Consensus 37 ~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 37 DILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred HHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 4444335788999999999999999999999999999999998888876553
No 355
>PRK10458 DNA cytosine methylase; Provisional
Probab=62.91 E-value=1.2e+02 Score=32.03 Aligned_cols=133 Identities=12% Similarity=-0.016 Sum_probs=75.3
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhh------------hhc
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRS------------IVA 298 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~------------~~~ 298 (420)
..+++|+-||-|.+...+-+.. --.+.++|+++.+.+.-+.|.. ...+...+..|+.++... .+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCccccccccchhhhhhhhh
Confidence 4689999999999998886652 2367889999998877766632 112334556676665210 000
Q ss_pred cCCCeEeEEEEeCC-CCCCCCcchh---------------hhhhHHHHHHHHHhhccCCeEEEEE-------eCcHHHHH
Q 014708 299 SYPGKLILVSIQCP-NPDFNRPEHR---------------WRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVML 355 (420)
Q Consensus 299 ~~~~~~d~i~~~fp-dp~~k~~~~k---------------~Rl~~~~~l~~i~~~LkpgG~l~~~-------td~~~~~~ 355 (420)
..-..+|.+...|| .|+......+ ..|+ .++++. .+.++|. .|+++ .+....++
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf-~~~~ri-i~~~kPk-~fvlENV~gl~s~~~g~~f~ 241 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLF-FDVARI-IDAKRPA-IFVLENVKNLKSHDKGKTFR 241 (467)
T ss_pred ccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHH-HHHHHH-HHHhCCC-EEEEeCcHhhhcccccHHHH
Confidence 00124687776654 3332222111 1121 233333 3345665 44443 23334577
Q ss_pred HHHHHHHHcCCcee
Q 014708 356 RMKQQFLEYGKGKL 369 (420)
Q Consensus 356 ~~~~~l~~~g~~~~ 369 (420)
.+++.|++.|+...
T Consensus 242 ~i~~~L~~lGY~v~ 255 (467)
T PRK10458 242 IIMQTLDELGYDVA 255 (467)
T ss_pred HHHHHHHHcCCeEE
Confidence 78889999888753
No 356
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=62.19 E-value=65 Score=32.93 Aligned_cols=109 Identities=16% Similarity=0.233 Sum_probs=67.5
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCC--cEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~--nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
.||=++=..|.++..++...|. .+ -| |--.-...++|+..++++ +++++.... - .+..+|.|.+.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~-~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~~--~-------~~~~~d~vl~~ 113 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SI-GD-SYISELATRENLRLNGIDESSVKFLDSTA--D-------YPQQPGVVLIK 113 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--ee-eh-HHHHHHHHHHHHHHcCCCcccceeecccc--c-------ccCCCCEEEEE
Confidence 6899999999999999976553 11 12 222223446677777765 355543222 1 24558998887
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHH
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 363 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~ 363 (420)
. ||.. .++ ...|..+...|.||+.++..-........+.+.+++
T Consensus 114 ~----PK~~----~~l-~~~l~~l~~~l~~~~~ii~g~~~k~i~~~~~~~~~k 157 (378)
T PRK15001 114 V----PKTL----ALL-EQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEK 157 (378)
T ss_pred e----CCCH----HHH-HHHHHHHHhhCCCCCEEEEEEecCCCcHHHHHHHHH
Confidence 3 3433 122 367889999999999987655444443344444443
No 357
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.37 E-value=39 Score=33.46 Aligned_cols=42 Identities=17% Similarity=0.391 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHH
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 272 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~ 272 (420)
.+..||=+|||. |..++.+|+.. +.+++++|.+++.++.+++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 367888899966 77778888876 4589999999998877744
No 358
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=61.06 E-value=46 Score=32.45 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=50.9
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+..+|=+|||. |.+++.+|+......++.+|.+++.++.|.+. . + .|..+. ....+|.++-
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~--i~~~~~-------~~~g~Dvvid 206 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----V--LDPEKD-------PRRDYRAIYD 206 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----c--cChhhc-------cCCCCCEEEE
Confidence 34566668763 66677788887555678889988776655321 1 0 111110 1234666654
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.... +..+..+.+.|+++|++.+.
T Consensus 207 ~~G~--------------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 207 ASGD--------------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CCCC--------------HHHHHHHHHhhhcCcEEEEE
Confidence 3211 24667788899999998864
No 359
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.65 E-value=82 Score=31.01 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=55.9
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..||=.|+| .|..++.+|+...-..++++|.+++..+.+++ .|...+ .....+......... ....+|.++
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~--~~~~~d~vl 240 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT--GGKGVDAVI 240 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh--CCCCCcEEE
Confidence 4566667876 45667777877644469999999887766653 343211 111112211111111 234578775
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
-.... ...+..+.+.|+++|+++.
T Consensus 241 d~~g~--------------~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 241 IAGGG--------------QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred ECCCC--------------HHHHHHHHHHhhcCCEEEE
Confidence 43111 2567888999999998875
No 360
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=60.26 E-value=75 Score=30.35 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=54.4
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+..||=+|+| -|..++.+|+..--.+++.+|.+++.++.+++ .|...+ +-..+......+.. ....+|.++-
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~-i~~~~~~~~~~~~~--~~~g~d~vid 193 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATAL-AEPEVLAERQGGLQ--NGRGVDVALE 193 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEe-cCchhhHHHHHHHh--CCCCCCEEEE
Confidence 5567777875 34455667777633349999999988777655 343211 11111111111111 1234777754
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.... +..++...+.|+|+|++.+.
T Consensus 194 ~~G~--------------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 194 FSGA--------------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CCCC--------------hHHHHHHHHHhcCCCEEEEe
Confidence 3111 25677888999999999864
No 361
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.23 E-value=94 Score=30.05 Aligned_cols=97 Identities=8% Similarity=0.067 Sum_probs=55.3
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh--------C----------CCcEEEEEcChhhhhh
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--------G----------ITNGYFIATNATSTFR 294 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~--------~----------l~nv~~~~~Da~~~~~ 294 (420)
.|.=||+|.=...+...-...+.+|+.+|++++.++.+++++.+. . ..++++ ..|..+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a-- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA-- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH--
Confidence 466678875333333222223678999999999998887664221 1 123332 2333222
Q ss_pred hhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 295 SIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 295 ~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-...|.|+...|... -+...+++++...++++-.+...
T Consensus 82 ------~~~aDlVieavpe~~---------~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 82 ------VKDADLVIEAVPEDP---------EIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred ------hcCCCEEEEeccCCH---------HHHHHHHHHHHhhCCCCCEEEEC
Confidence 124577777655432 12236778888888877766443
No 362
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=60.23 E-value=59 Score=27.87 Aligned_cols=89 Identities=13% Similarity=0.250 Sum_probs=45.6
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
..+++|||-|.=.-.....+.+ +..++++|+++. ++. . .+.++..|+.+-..+.. ...|.||..
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY----~~a~lIYSi 77 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIY----EGADLIYSI 77 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------------STTEE---SSS--HHHH----TTEEEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc-------ccc-c---CcceeeecccCCCHHHh----cCCcEEEEe
Confidence 4589999999876655444443 589999999997 221 2 35788888876321222 257999988
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 311 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
=|.|. +++.+++...++ |.-+++.+
T Consensus 78 RPP~E----------l~~~il~lA~~v---~adlii~p 102 (127)
T PF03686_consen 78 RPPPE----------LQPPILELAKKV---GADLIIRP 102 (127)
T ss_dssp S--TT----------SHHHHHHHHHHH---T-EEEEE-
T ss_pred CCChH----------HhHHHHHHHHHh---CCCEEEEC
Confidence 66653 344454443333 67777765
No 363
>PRK10206 putative oxidoreductase; Provisional
Probab=60.21 E-value=46 Score=33.30 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=39.0
Q ss_pred EEEEEcCCc-cH--HHHHHHHhCCCCeEEE-EeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 233 LVVDIGSGN-GL--FLLGMARKRKDLNFLG-LEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 233 ~vLDIGcG~-G~--~~~~lA~~~P~~~viG-iDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
++.=||||. +. +...+....|+..+++ +|.+++.. +.+.+.+ .+. ...|..+++ .+..+|.|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~----~~~~~~~--~~~-~~~~~~ell------~~~~iD~V~ 69 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE----EQAPIYS--HIH-FTSDLDEVL------NDPDVKLVV 69 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH----HHHHhcC--CCc-ccCCHHHHh------cCCCCCEEE
Confidence 356689996 32 2322334446788877 67765432 2222232 222 235666553 356799999
Q ss_pred EeCCCCC
Q 014708 309 IQCPNPD 315 (420)
Q Consensus 309 ~~fpdp~ 315 (420)
+.-|+..
T Consensus 70 I~tp~~~ 76 (344)
T PRK10206 70 VCTHADS 76 (344)
T ss_pred EeCCchH
Confidence 9766553
No 364
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=59.79 E-value=71 Score=31.16 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEE
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.+..||-.|+|. |..++.+|+.. +.+++.+.-+++..+.+++ .+...+ .....+..+.+.... ....+|.+
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~--~~~~vd~v 231 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT--DGEGADVV 231 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh--CCCCCCEE
Confidence 356778889874 77888888874 6889999888877766633 232221 111122222222222 23457777
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+-..-. ...+..+.+.|+++|.++..
T Consensus 232 ld~~g~--------------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 232 IDATGN--------------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 543111 25678888999999998754
No 365
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=59.36 E-value=1e+02 Score=30.62 Aligned_cols=96 Identities=9% Similarity=0.117 Sum_probs=58.8
Q ss_pred CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE-c-ChhhhhhhhhccCCCeEe
Q 014708 230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA-T-NATSTFRSIVASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~-~-Da~~~~~~~~~~~~~~~d 305 (420)
.+..||=.|+ |.|..++.+|+.. +.++++++.+++..+.+++. .|...+--.. . +..+.+.... ...+|
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---~~gvD 230 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF---PEGID 230 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC---CCCcE
Confidence 3677888887 4788888899886 57899999998876665432 3443211111 1 2222222211 23577
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.++-.. ....+....++|+++|++.+.
T Consensus 231 ~v~d~v---------------G~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 231 IYFDNV---------------GGDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEECC---------------CHHHHHHHHHHhccCCEEEEE
Confidence 775321 124667788899999998864
No 366
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.04 E-value=47 Score=31.67 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=66.3
Q ss_pred CCEEEEEcCCccHHHHHHHHh-CC----C----CeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-----hhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARK-RK----D----LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-----RSI 296 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~-~P----~----~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-----~~~ 296 (420)
-.+++|++...|.+...|+++ +. + ..++++|+.+- ..+..|.-+++|+...- -++
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 467999999999999999987 32 1 12999998763 23566888889987641 123
Q ss_pred hccCCCeEeEEEEeC-CCCCCCCcchhhhhhHH----HHHHHHHhhccCCeEEEEE
Q 014708 297 VASYPGKLILVSIQC-PNPDFNRPEHRWRMVQR----SLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 297 ~~~~~~~~d~i~~~f-pdp~~k~~~~k~Rl~~~----~~l~~i~~~LkpgG~l~~~ 347 (420)
| ....-|.|.+.. ||- -.-|.-...++. ..|.....+|||||.|+-.
T Consensus 111 f--ggekAdlVvcDGAPDv--TGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 111 F--GGEKADLVVCDGAPDV--TGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred h--CCCCccEEEeCCCCCc--cccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 4 245677776632 222 122333333443 3456677899999999854
No 367
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=57.44 E-value=1e+02 Score=31.56 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=54.5
Q ss_pred EEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHh-----------HHh--CCCcEEEEEcChhhhhhhhhccC
Q 014708 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL-----------QLS--GITNGYFIATNATSTFRSIVASY 300 (420)
Q Consensus 234 vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~-----------~~~--~l~nv~~~~~Da~~~~~~~~~~~ 300 (420)
|.=||+|.=...+...-...+.+|+++|++++.++..++.. ... ...++++. .|..+.
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~-------- 73 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDA-------- 73 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHH--------
Confidence 34467765333222222223678999999998876543210 000 01123332 232221
Q ss_pred CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
-...|.|++.-|+|......+.-+.+ ...++.+...|++|-.++..|
T Consensus 74 ~~~advvii~vpt~~~~~~~~d~~~v-~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 74 IRDADVIIICVPTPLKEDGSPDLSYV-ESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HhhCCEEEEEeCCCCCCCCCcChHHH-HHHHHHHHHhcCCCCEEEEeC
Confidence 12468888887887533222221222 245677788888887776654
No 368
>PTZ00357 methyltransferase; Provisional
Probab=57.20 E-value=41 Score=37.02 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=63.2
Q ss_pred CEEEEEcCCccHHHHHHHHh----CCCCeEEEEeCChHHHHHHHHHh-HHhCCC--------cEEEEEcChhhhhhhh--
Q 014708 232 PLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSL-QLSGIT--------NGYFIATNATSTFRSI-- 296 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~----~P~~~viGiDis~~~i~~A~~~~-~~~~l~--------nv~~~~~Da~~~~~~~-- 296 (420)
.+|+=+|+|-|-+.-...+. .-..++++||.++.++...+.+. .....+ .|+++..|+..+....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999985443322 33678999999976554444432 212222 3999999999873110
Q ss_pred --h--ccCCCeEeEEEE----eCCCCCCCCcchhhhhhHHHHHHHHHhhccC----CeE
Q 014708 297 --V--ASYPGKLILVSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH----DGK 343 (420)
Q Consensus 297 --~--~~~~~~~d~i~~----~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkp----gG~ 343 (420)
. +..-+.+|.++. .|-|- -++|+-|.-+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDN----------ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDN----------ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccc----------cCCHHHHHHHHHhhhhhcccccc
Confidence 0 000125777753 12222 2457899999999987 775
No 369
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=57.01 E-value=83 Score=30.44 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=58.7
Q ss_pred EEEEcCCc-cH-HHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 234 VVDIGSGN-GL-FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 234 vLDIGcG~-G~-~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
|.=||+|. |. ++..+++ .+..++++|.++..++.+.+ .+. . ...+..+. + ...|.|++..
T Consensus 5 IgviG~G~mG~~~a~~l~~--~g~~v~~~d~~~~~~~~~~~----~g~---~-~~~~~~e~----~----~~~d~vi~~v 66 (296)
T PRK11559 5 VGFIGLGIMGKPMSKNLLK--AGYSLVVYDRNPEAVAEVIA----AGA---E-TASTAKAV----A----EQCDVIITML 66 (296)
T ss_pred EEEEccCHHHHHHHHHHHH--CCCeEEEEcCCHHHHHHHHH----CCC---e-ecCCHHHH----H----hcCCEEEEeC
Confidence 55567775 33 3344443 35689999999887655432 222 1 12233322 1 2468888887
Q ss_pred CCCCCCCcchhhhhhHHHHH---HHHHhhccCCeEEEE-EeCcHHHHHHHHHHHHHcCCc
Q 014708 312 PNPDFNRPEHRWRMVQRSLV---EAVSDLLVHDGKVFL-QSDIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~~~~l---~~i~~~LkpgG~l~~-~td~~~~~~~~~~~l~~~g~~ 367 (420)
|++. + + ...+ ..+...+++|-.++- .|-.+...+.+.+.+.+.+..
T Consensus 67 p~~~----~-----~-~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 67 PNSP----H-----V-KEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred CCHH----H-----H-HHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 7653 1 1 1222 235566777666652 334455566777777777654
No 370
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=56.70 E-value=1.1e+02 Score=32.69 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHH
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 272 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~ 272 (420)
.+.+|+=+|||. |..++..|+.. +..|+++|.+++.++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 368899999997 55566677776 4589999999999887765
No 371
>PRK07904 short chain dehydrogenase; Provisional
Probab=56.60 E-value=49 Score=31.14 Aligned_cols=80 Identities=9% Similarity=0.093 Sum_probs=51.3
Q ss_pred CCEEEEEcCCccHHHHHHHHhC---CCCeEEEEeCChHH-HHHHHHHhHHhCCCcEEEEEcChhhhhh--hhhcc--CCC
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKL-VTHCRDSLQLSGITNGYFIATNATSTFR--SIVAS--YPG 302 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~---P~~~viGiDis~~~-i~~A~~~~~~~~l~nv~~~~~Da~~~~~--~~~~~--~~~ 302 (420)
+.++|=.|+ +|.++..+|+++ ...+|+.++.+++. ++.+.+.+...+..++.++++|+.+... ..+.. ..+
T Consensus 8 ~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 8 PQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 567899998 566777777652 24789999988774 6666565555554579999999875421 11110 124
Q ss_pred eEeEEEEeC
Q 014708 303 KLILVSIQC 311 (420)
Q Consensus 303 ~~d~i~~~f 311 (420)
.+|.++.+.
T Consensus 87 ~id~li~~a 95 (253)
T PRK07904 87 DVDVAIVAF 95 (253)
T ss_pred CCCEEEEee
Confidence 688776553
No 372
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=56.27 E-value=2.1e+02 Score=28.14 Aligned_cols=115 Identities=11% Similarity=0.114 Sum_probs=59.4
Q ss_pred EEEEcCCc-cHHHHH-HHHhCCCCeEEEEeCChHHHH-HHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 234 VVDIGSGN-GLFLLG-MARKRKDLNFLGLEVNGKLVT-HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 234 vLDIGcG~-G~~~~~-lA~~~P~~~viGiDis~~~i~-~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
|.=||+|. |..... ++.+.....++.+|++++..+ .+......... .+..+...|..++ ...|.+++
T Consensus 3 I~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l---------~~aDiVii 73 (308)
T cd05292 3 VAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADC---------KGADVVVI 73 (308)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHh---------CCCCEEEE
Confidence 56689876 443333 333333367999999987654 33332221111 1233333443222 23578877
Q ss_pred eCCCCCCCCcchhhhhh--H----HHHHHHHHhhccCCeEEEEEeCcHHHHHHHHH
Q 014708 310 QCPNPDFNRPEHRWRMV--Q----RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 359 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~--~----~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~ 359 (420)
..+.|+ +....+..+. + +++.+.+.+ ..|+|.+++.++..+...+...
T Consensus 74 ta~~~~-~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tNP~d~~~~~~~ 127 (308)
T cd05292 74 TAGANQ-KPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTNPVDVLTYVAY 127 (308)
T ss_pred ccCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHHHHHHHHH
Confidence 766665 2222222222 1 344444444 4488999999876555444443
No 373
>PRK10537 voltage-gated potassium channel; Provisional
Probab=55.33 E-value=1e+02 Score=31.61 Aligned_cols=104 Identities=7% Similarity=0.030 Sum_probs=61.4
Q ss_pred CCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhc-cCCCeEeEEEEeCCCCC
Q 014708 239 SGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQCPNPD 315 (420)
Q Consensus 239 cG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~-~~~~~~d~i~~~fpdp~ 315 (420)
||.|..+..+++. .-+..++.+|.+.. + +.. .++..++++|+.+. +.+. ..-+..+.+.+..+|..
T Consensus 246 ~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~----~~~---~~g~~vI~GD~td~--e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 246 CGHSPLAINTYLGLRQRGQAVTVIVPLGL--E----HRL---PDDADLIPGDSSDS--AVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECchh--h----hhc---cCCCcEEEeCCCCH--HHHHhcCcccCCEEEEcCCChH
Confidence 6677777777664 22467888986521 1 111 13467899999864 2221 01234566666544431
Q ss_pred CCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCce
Q 014708 316 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 316 ~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~ 368 (420)
...++-...+.+.|+.+++.+.++++. .+.+++.|...
T Consensus 315 -----------~Nl~ivL~ar~l~p~~kIIa~v~~~~~----~~~L~~~GaD~ 352 (393)
T PRK10537 315 -----------DNAFVVLAAKEMSSDVKTVAAVNDSKN----LEKIKRVHPDM 352 (393)
T ss_pred -----------HHHHHHHHHHHhCCCCcEEEEECCHHH----HHHHHhcCCCE
Confidence 113455667889999999988877664 34456666544
No 374
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=54.85 E-value=2.1e+02 Score=27.95 Aligned_cols=72 Identities=18% Similarity=0.073 Sum_probs=42.4
Q ss_pred CEEEEEcCCccH--HHHHHHHhCCC-CeEEEE-eCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 232 PLVVDIGSGNGL--FLLGMARKRKD-LNFLGL-EVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 232 ~~vLDIGcG~G~--~~~~lA~~~P~-~~viGi-Dis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.++.=||||.-. .-....+..++ ..++++ |.+++..+ +-+++.+.. -...|..+++ .+..+|.|
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~---~~a~~~~~~---~~~~~~~~ll------~~~~iD~V 71 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAE---AFAEEFGIA---KAYTDLEELL------ADPDIDAV 71 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHH---HHHHHcCCC---cccCCHHHHh------cCCCCCEE
Confidence 457779999322 12223334455 366666 88887644 444445544 3445665553 35569999
Q ss_pred EEeCCCCC
Q 014708 308 SIQCPNPD 315 (420)
Q Consensus 308 ~~~fpdp~ 315 (420)
++.-|+..
T Consensus 72 ~Iatp~~~ 79 (342)
T COG0673 72 YIATPNAL 79 (342)
T ss_pred EEcCCChh
Confidence 99866654
No 375
>PRK07102 short chain dehydrogenase; Provisional
Probab=53.76 E-value=64 Score=29.77 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=40.4
Q ss_pred EEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 233 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
.++=.|+ +|.++..++++. -+.+|+.++.+++..+...+.....+-.++.++++|+.+.
T Consensus 3 ~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 3 KILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 4677774 466666665552 3678999999987766555544444445799999998875
No 376
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=53.67 E-value=1.1e+02 Score=29.76 Aligned_cols=95 Identities=14% Similarity=0.179 Sum_probs=56.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+..||-.|||. |..++.+|+...-..+++++.++...+.+++ .+... ++..+-..+ ..... ....+|.++-
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~~--vi~~~~~~~-~~~~~-~~~~vd~vld 237 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGADE--TVNLARDPL-AAYAA-DKGDFDVVFE 237 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCCE--EEcCCchhh-hhhhc-cCCCccEEEE
Confidence 45666688886 7788888887632379999998887765533 23321 221111111 11111 1234777754
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.... ...++.+.+.|+++|+++..
T Consensus 238 ~~g~--------------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 238 ASGA--------------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred CCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 3111 14577888999999998864
No 377
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=53.11 E-value=54 Score=32.34 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=55.9
Q ss_pred EEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhc
Q 014708 259 GLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL 338 (420)
Q Consensus 259 GiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~L 338 (420)
=++..+...+.+++++. +|.++++|..+++.. .+.+.+|.+.+.-..-|+.+..- ..++.++.+-+
T Consensus 291 P~yl~~~~YEsir~n~~-----RV~ihha~~iE~l~~---k~ag~Vdr~iLlDaqdwmtd~ql------n~lws~isrta 356 (414)
T COG5379 291 PAYLDEGVYESIRQNLR-----RVAIHHADIIELLAG---KPAGNVDRYILLDAQDWMTDGQL------NSLWSEISRTA 356 (414)
T ss_pred ChhhchhhHHHHHhhhh-----heeeecccHHHHhcc---CCCCCcceEEEecchhhcccchH------HHHHHHHhhcc
Confidence 35566667777766654 599999999988632 14578999888755556544322 47899999999
Q ss_pred cCCeEEEEEe
Q 014708 339 VHDGKVFLQS 348 (420)
Q Consensus 339 kpgG~l~~~t 348 (420)
.+|..++|.|
T Consensus 357 ~~gA~VifRt 366 (414)
T COG5379 357 EAGARVIFRT 366 (414)
T ss_pred CCCcEEEEec
Confidence 9999999987
No 378
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.48 E-value=78 Score=31.68 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=56.0
Q ss_pred CCEEEEEc-CCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIG-SGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIG-cG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+..+-=+| +|-|.+++.+|++. ..+|++||-+..--+.|-+ ..|.+..-....|-... ..+...-+.-+|.+..
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~---~LGAd~fv~~~~d~d~~-~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIK---SLGADVFVDSTEDPDIM-KAIMKTTDGGIDTVSN 256 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHH---hcCcceeEEecCCHHHH-HHHHHhhcCcceeeee
Confidence 45555555 35799999999997 7899999999754443433 34544311111122211 2222212445555543
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+ .. .-++.+...||++|++++.
T Consensus 257 ~--a~--------------~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 257 L--AE--------------HALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred c--cc--------------cchHHHHHHhhcCCEEEEE
Confidence 2 11 2346677899999999885
No 379
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=52.45 E-value=25 Score=34.84 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=68.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhC--------------------CCCeEEEEeCCh--HHHHHHHHHhHHh-----------
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR--------------------KDLNFLGLEVNG--KLVTHCRDSLQLS----------- 277 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~--------------------P~~~viGiDis~--~~i~~A~~~~~~~----------- 277 (420)
...||-||=|-|.=.+++|..+ |..+++.|||.+ ..+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4689999999998888887765 225899999984 3344333332211
Q ss_pred ------CCCcEEEEEcChhhhhhhhhc-c-CCCeEeEEEEeCC-CCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 278 ------GITNGYFIATNATSTFRSIVA-S-YPGKLILVSIQCP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 278 ------~l~nv~~~~~Da~~~~~~~~~-~-~~~~~d~i~~~fp-dp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+.=|+.|.+.|+..+-.+-+. . .+...+.|++.|- +-.+-.... -.-.||..+...++||-.|.+.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~----kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSIS----KTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChH----HHHHHHHHHHhhcCCCcEEEEE
Confidence 112699999999877332110 0 1224566655441 111111101 1148999999999999888774
No 380
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=52.31 E-value=53 Score=31.35 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=38.0
Q ss_pred CCCCCcEEEEEcCCccc----------hHHHHHHHHHHh--cCeEEEehH----------HHHHHHHhcCCCCCCccccc
Q 014708 3 KLDEKPYAAIIGGGNLC----------NKAAALHFLASR--CDGLIFVGL----------MSFQIMHALGLPVPPELVEK 60 (420)
Q Consensus 3 ~~~~~p~~~i~GG~kv~----------dki~~~~~l~~~--~d~i~~gG~----------~a~~fl~a~g~~ig~s~~e~ 60 (420)
+.|.++.+.|||+++.. +.+..--.|.+. +.+||+.|+ +.--.|.++|++-..=++|.
T Consensus 41 ~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~ 120 (239)
T PRK10834 41 DLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY 120 (239)
T ss_pred hCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecC
Confidence 35788999999998752 333333334433 888888886 22334556777766656666
Q ss_pred Cc
Q 014708 61 GA 62 (420)
Q Consensus 61 ~~ 62 (420)
..
T Consensus 121 ~s 122 (239)
T PRK10834 121 AG 122 (239)
T ss_pred CC
Confidence 55
No 381
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.24 E-value=21 Score=31.92 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=48.4
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
+..+-||||.=. -+|++..+-++-+++ +.++ ++|... ..| .++|+|.|+.-.
T Consensus 4 p~kv~ig~G~~r-------~npgWi~~d~ed~~~----------------vdlv-c~As~e--~~F--~dns~d~iyaeH 55 (185)
T COG4627 4 PEKVKIGAGGKR-------VNPGWIITDVEDRPE----------------VDLV-CRASNE--SMF--EDNSVDAIYAEH 55 (185)
T ss_pred ceEEEEeccccc-------cCCCceeeehhcccc----------------cchh-hhhhhh--ccC--CCcchHHHHHHH
Confidence 567889999732 367877665554432 2222 122221 123 578888886531
Q ss_pred CCCCCCCcchhhhhh---HHHHHHHHHhhccCCeEEEEEeC
Q 014708 312 PNPDFNRPEHRWRMV---QRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~---~~~~l~~i~~~LkpgG~l~~~td 349 (420)
- | .| ++ ...+++++++.|||||++-++..
T Consensus 56 v--l----EH---lt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 56 V--L----EH---LTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred H--H----HH---HhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 0 0 00 11 14789999999999999998753
No 382
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.00 E-value=29 Score=35.14 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=43.7
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEE---EeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLG---LEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viG---iDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
..++|+|||.|.++..++...++.+++- +|.....+..-++...+.. .-+.=++.|+.++
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~-~vi~R~riDI~dL 246 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNS-LVIKRIRIDIEDL 246 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCc-chhheeEeeHHhc
Confidence 6899999999999999999888887777 8888777655444332221 2355566777776
No 383
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=51.89 E-value=31 Score=26.87 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.7
Q ss_pred CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
+..+|.--..+|-|. =.++...+.|++|+.+.+.+|++...+.+....++.|+....
T Consensus 9 ~~~lD~~Gl~CP~Pl-------------l~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~ 65 (81)
T PRK00299 9 DHTLDALGLRCPEPV-------------MMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLA 65 (81)
T ss_pred CeEEecCCCCCCHHH-------------HHHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 456777666778775 345667788899999999999988888888888999887643
No 384
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=51.68 E-value=9 Score=35.01 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=26.7
Q ss_pred HHHHHHHHhhccCCeEEEEEeCcHHHHH-HHHHHHHHcC-Cce
Q 014708 328 RSLVEAVSDLLVHDGKVFLQSDIEEVML-RMKQQFLEYG-KGK 368 (420)
Q Consensus 328 ~~~l~~i~~~LkpgG~l~~~td~~~~~~-~~~~~l~~~g-~~~ 368 (420)
.+++.++.|+|||||.+++..++..... ......+..| +..
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~ 78 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFL 78 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhhe
Confidence 5788999999999999999877654432 2233344445 544
No 385
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.57 E-value=47 Score=35.03 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=32.0
Q ss_pred CCcEEEEEcCC-ccchHHHHHHHHHHhcCeEEEehHHHHHHHHh
Q 014708 6 EKPYAAIIGGG-NLCNKAAALHFLASRCDGLIFVGLMSFQIMHA 48 (420)
Q Consensus 6 ~~p~~~i~GG~-kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a 48 (420)
.++.++|+||- |-.|.=.+.+.+.+++|.+++.|--+..+...
T Consensus 387 ~~~ii~IlGg~~~~~~~~~~~~~l~~~~~~vi~~G~~~~~i~~~ 430 (498)
T PRK02006 387 AQRVVLIAGGDGKGQDFSPLAAPVARHARAVVLIGRDAPAIRAA 430 (498)
T ss_pred CCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEEcCCHHHHHHH
Confidence 46789999996 55566666677777899999999776666543
No 386
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.51 E-value=1.1e+02 Score=29.33 Aligned_cols=96 Identities=9% Similarity=0.056 Sum_probs=55.4
Q ss_pred EEEEEcCCc--cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhH-------HhCC----------CcEEEEEcChhhhh
Q 014708 233 LVVDIGSGN--GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ-------LSGI----------TNGYFIATNATSTF 293 (420)
Q Consensus 233 ~vLDIGcG~--G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~-------~~~l----------~nv~~~~~Da~~~~ 293 (420)
.|.=||+|. +.++..++++ +.+|+++|++++.++.++++++ +.+. .++++ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD-- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH--
Confidence 355677773 3334444444 5689999999999987664332 2221 12322 222211
Q ss_pred hhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 294 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 294 ~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
-...|.|+..-|... .+..+++.++.+.++|+..+...|.
T Consensus 80 -------~~~aDlVi~av~e~~---------~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 -------LKDADLVIEAATENM---------DLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred -------hccCCeeeecccccH---------HHHHHHHHHHHhhCCCCcEEEECCC
Confidence 124577776643321 1224788899999999887744443
No 387
>PLN02740 Alcohol dehydrogenase-like
Probab=51.19 E-value=1.4e+02 Score=30.00 Aligned_cols=95 Identities=22% Similarity=0.258 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc-----ChhhhhhhhhccCCCe
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-----NATSTFRSIVASYPGK 303 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~-----Da~~~~~~~~~~~~~~ 303 (420)
.+..||=+|||. |..++.+|+.....+++++|.+++.++.+++ .|... ++.. +..+.+.+.. .+.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~~---~~g 268 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREMT---GGG 268 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHHh---CCC
Confidence 356777778753 4445667777643379999999998887744 34432 2211 1222112211 225
Q ss_pred EeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014708 304 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 347 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~ 347 (420)
+|.++-..-. +..+....+.+++| |++++.
T Consensus 269 ~dvvid~~G~--------------~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 269 VDYSFECAGN--------------VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCEEEECCCC--------------hHHHHHHHHhhhcCCCEEEEE
Confidence 7777543211 25677777888886 887764
No 388
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=51.03 E-value=1.2e+02 Score=30.85 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=57.5
Q ss_pred CCEEEEEc-CC-ccHHHHHHHHhCC--CCeEEEEeCChHHHHHHHHHhHHh----CCCcEEEEE----cChhhhhhhhhc
Q 014708 231 QPLVVDIG-SG-NGLFLLGMARKRK--DLNFLGLEVNGKLVTHCRDSLQLS----GITNGYFIA----TNATSTFRSIVA 298 (420)
Q Consensus 231 ~~~vLDIG-cG-~G~~~~~lA~~~P--~~~viGiDis~~~i~~A~~~~~~~----~l~nv~~~~----~Da~~~~~~~~~ 298 (420)
+..||=+| +| -|..++.+|+..- ..+++++|.+++.++.+++..... |.. ..++. .|....+.+..
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~-~~~i~~~~~~~~~~~v~~~t- 253 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE-LLYVNPATIDDLHATLMELT- 253 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce-EEEECCCccccHHHHHHHHh-
Confidence 45677776 44 6777788888742 247999999999998887742110 211 11221 12222112211
Q ss_pred cCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 299 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 299 ~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
....+|.++..-.. +..+....+.|+++|.+++.
T Consensus 254 -~g~g~D~vid~~g~--------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 -GGQGFDDVFVFVPV--------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred -CCCCCCEEEEcCCC--------------HHHHHHHHHHhccCCeEEEE
Confidence 23357777653222 25677788899988876543
No 389
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=51.00 E-value=13 Score=36.19 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHH
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLV 267 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i 267 (420)
++.+|||+|||+|--.+...... ...+.-.|.+.+.+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence 47899999999999988877763 37788888888877
No 390
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.99 E-value=98 Score=29.89 Aligned_cols=135 Identities=14% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC--CCeEEEEeCChHHHHHH------HHHhH---HhCCCcEEEEEcChhhhhhhhhc
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK--DLNFLGLEVNGKLVTHC------RDSLQ---LSGITNGYFIATNATSTFRSIVA 298 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P--~~~viGiDis~~~i~~A------~~~~~---~~~l~nv~~~~~Da~~~~~~~~~ 298 (420)
+...||.+|=|.=.++..|+.++- ..++++..+...-.+.- ..+.+ ..|. .-+...|+..+- ....
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~--~I~h~Vdv~sl~-~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGG--TILHGVDVTSLK-FHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCC--ceEecccceeEE-eccc
Confidence 356799999888888999999853 44666665554432222 22322 2232 344555665541 1111
Q ss_pred cCCCeEeEEEEeCCCCCCCC-cchhhhh------hHHHHHHHHHhhcc-CCeEEEEEe-CcHHHHHHHHHHHH-HcCCc
Q 014708 299 SYPGKLILVSIQCPNPDFNR-PEHRWRM------VQRSLVEAVSDLLV-HDGKVFLQS-DIEEVMLRMKQQFL-EYGKG 367 (420)
Q Consensus 299 ~~~~~~d~i~~~fpdp~~k~-~~~k~Rl------~~~~~l~~i~~~Lk-pgG~l~~~t-d~~~~~~~~~~~l~-~~g~~ 367 (420)
..-+.+|.|+++||-.=..- +...+.. +...||+.+...|+ ..|.+++.. +.++|-.|=...|. +.|+.
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~Lak~~gl~ 211 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKFLAKEFGLT 211 (282)
T ss_pred ccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhHhhhhcccc
Confidence 13467999999987542111 1222222 22689999999999 889988852 34555566555554 44444
No 391
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=50.63 E-value=1.3e+02 Score=29.10 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=56.3
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCe-EEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~-viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..+|-+|+| .|..++.+|+... .+ ++.++.+++....+++ .+.. .++..+-........ .....+|.++
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~-~~~~~vd~v~ 231 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKE-DNPYGFDVVI 231 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHH-hcCCCCcEEE
Confidence 5677888876 3777788888863 44 8999999887766633 3432 222222111100001 1234577775
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-.... ...+....+.|+++|+++..
T Consensus 232 ~~~~~--------------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 232 EATGV--------------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred ECCCC--------------hHHHHHHHHHHhcCCEEEEE
Confidence 43111 25677788999999998754
No 392
>PLN02827 Alcohol dehydrogenase-like
Probab=50.23 E-value=1.6e+02 Score=29.71 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc----ChhhhhhhhhccCCCeE
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~----Da~~~~~~~~~~~~~~~ 304 (420)
.+..||=.|+|. |..++.+|+..--..++++|.++...+.|++ .|...+ +-.. +....+.+.. .+.+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~-i~~~~~~~~~~~~v~~~~---~~g~ 264 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDF-INPNDLSEPIQQVIKRMT---GGGA 264 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEE-EcccccchHHHHHHHHHh---CCCC
Confidence 356777778743 4445667776533369999999987776633 454321 1111 2222222221 2257
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 347 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~ 347 (420)
|.++-.--. +..+....+.|++| |++++.
T Consensus 265 d~vid~~G~--------------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 265 DYSFECVGD--------------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CEEEECCCC--------------hHHHHHHHHhhccCCCEEEEE
Confidence 776532111 14567778889998 998763
No 393
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=50.21 E-value=1.2e+02 Score=28.50 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=54.1
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~-viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..+|=.|||. |..++.+|+... .+ +++++.+++..+.+++. |..+..+ .. . +... ....+|.++
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~----g~~~~~~-~~--~---~~~~--~~~~~d~vl 164 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEAL----GPADPVA-AD--T---ADEI--GGRGADVVI 164 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHc----CCCcccc-cc--c---hhhh--cCCCCCEEE
Confidence 45566668876 777888888863 45 99999998887765542 3111000 00 0 0001 234577765
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-.-.. ...+....+.|+++|+++..
T Consensus 165 ~~~~~--------------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 165 EASGS--------------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EccCC--------------hHHHHHHHHHhcCCcEEEEE
Confidence 42111 24667788899999999864
No 394
>PRK07326 short chain dehydrogenase; Provisional
Probab=50.05 E-value=68 Score=29.34 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=41.4
Q ss_pred CCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
+..+|=+| |+|.++..++++. .+.+|++++.++.......+..... .++.++.+|+.+.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~ 66 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDE 66 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCH
Confidence 46788888 5777777776652 3678999999887766555544322 4688888888754
No 395
>PRK11579 putative oxidoreductase; Provisional
Probab=49.16 E-value=2.2e+02 Score=28.18 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=40.7
Q ss_pred CEEEEEcCCc-cH-HHHHHHHhCCCCeEEE-EeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 232 PLVVDIGSGN-GL-FLLGMARKRKDLNFLG-LEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 232 ~~vLDIGcG~-G~-~~~~lA~~~P~~~viG-iDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+|.=||||. |. +.....+..|+..+++ +|.+++.. ++ .. ..+. ...|..+++ .+..+|.|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~---~~---~~--~~~~-~~~~~~ell------~~~~vD~V~ 69 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV---KA---DW--PTVT-VVSEPQHLF------NDPNIDLIV 69 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH---Hh---hC--CCCc-eeCCHHHHh------cCCCCCEEE
Confidence 4678899987 43 3334344578888887 56665432 11 12 1222 245666553 356799999
Q ss_pred EeCCCCC
Q 014708 309 IQCPNPD 315 (420)
Q Consensus 309 ~~fpdp~ 315 (420)
+.-|+..
T Consensus 70 I~tp~~~ 76 (346)
T PRK11579 70 IPTPNDT 76 (346)
T ss_pred EcCCcHH
Confidence 8766554
No 396
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=48.78 E-value=2.2e+02 Score=27.58 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=57.7
Q ss_pred CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeE
Q 014708 230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~ 304 (420)
.+..||=.|. |.|..++.+|+.. +.++++++.+++..+.+++ .|...+ +-.. +....... . ....+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~----lGa~~v-i~~~~~~~~~~~~~~-~--~~~gv 208 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKK----LGFDVA-FNYKTVKSLEETLKK-A--SPDGY 208 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEE-EeccccccHHHHHHH-h--CCCCe
Confidence 3567777773 5788888899875 5689999999887766633 454322 1111 12222111 1 13457
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
|.++-... ...+....++|+++|+++..
T Consensus 209 dvv~d~~G---------------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYFDNVG---------------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEEECCC---------------HHHHHHHHHHhCcCcEEEEe
Confidence 87754211 13457788999999999864
No 397
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=48.48 E-value=42 Score=32.31 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=41.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhC
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG 278 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~ 278 (420)
.+.+|||-=+|+|..+++..+. +.+++|+|+++..++.+.++..+..
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhhc
Confidence 4789999999999999887666 7899999999999999999987543
No 398
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.82 E-value=2.5e+02 Score=27.05 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=55.6
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-------CC----------CcEEEEEcChhhhhh
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-------GI----------TNGYFIATNATSTFR 294 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-------~l----------~nv~~~~~Da~~~~~ 294 (420)
..|.=||+|+=...+...-...+..|+.+|.+++.++.+.++..+. +. .++++. .|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED--- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH---
Confidence 3466678875443332222223678999999999988766543321 21 223332 22211
Q ss_pred hhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 295 SIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 295 ~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+ ...|.|+...|+.. + +...++.++...++|+..+...|
T Consensus 81 --~----~~aD~Vieavpe~~----~-----~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 81 --L----ADCDLVIEAATEDE----T-----VKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred --h----cCCCEEEEcCcCCH----H-----HHHHHHHHHHhhCCCCcEEEEcC
Confidence 1 24577777655432 1 22367788889999988776444
No 399
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=47.67 E-value=2.8e+02 Score=27.17 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=54.4
Q ss_pred EcCCc-cHHHHHHHHhCCC-CeEEEEeCChHHH-HHHHHHhHHhC--CCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 237 IGSGN-GLFLLGMARKRKD-LNFLGLEVNGKLV-THCRDSLQLSG--ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 237 IGcG~-G~~~~~lA~~~P~-~~viGiDis~~~i-~~A~~~~~~~~--l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
||+|. |.....++...+- ..++-+|+.++.+ ..+....+... ..++.+..+|-.++ . ..|.|.+..
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-------~--daDivVita 72 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC-------K--DADLVVITA 72 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH-------C--CCCEEEECC
Confidence 57766 5554444433333 3699999987643 33333222211 23455554444333 1 246766654
Q ss_pred CCCCCCCcchhhhhhH------HHHHHHHHhhccCCeEEEEEeCcHHHHH
Q 014708 312 PNPDFNRPEHRWRMVQ------RSLVEAVSDLLVHDGKVFLQSDIEEVML 355 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~------~~~l~~i~~~LkpgG~l~~~td~~~~~~ 355 (420)
-.|. +....+..++. .++.+.+.+. .|.|.+++.|+..+...
T Consensus 73 g~~r-k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t 120 (299)
T TIGR01771 73 GAPQ-KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVDILT 120 (299)
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHHHHH
Confidence 4443 22222222222 3444555553 69999999886544433
No 400
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=47.46 E-value=1e+02 Score=30.13 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=63.5
Q ss_pred CEEEEEcCCc--cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 232 PLVVDIGSGN--GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 232 ~~vLDIGcG~--G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+|+=+|.|- |.++..+.+..+...++|.|.+...+..+.+ .|+ ..-..+.... . .....|.|++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv---~d~~~~~~~~----~--~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGV---IDELTVAGLA----E--AAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCc---ccccccchhh----h--hcccCCEEEE
Confidence 4566677663 4555556666777889999999988776643 222 2211111101 0 2345688887
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcC
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 365 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g 365 (420)
.-|-. ...++++++...|++|..+. |.-.......+.++++.
T Consensus 71 avPi~-----------~~~~~l~~l~~~l~~g~iv~---Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 71 AVPIE-----------ATEEVLKELAPHLKKGAIVT---DVGSVKSSVVEAMEKYL 112 (279)
T ss_pred eccHH-----------HHHHHHHHhcccCCCCCEEE---ecccccHHHHHHHHHhc
Confidence 74432 22588999999999988764 44334444555555543
No 401
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.35 E-value=50 Score=33.93 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=30.5
Q ss_pred CCCcEEEEEcC-CccchHHHHHHHHHHhcCeEEEehHHHHHH
Q 014708 5 DEKPYAAIIGG-GNLCNKAAALHFLASRCDGLIFVGLMSFQI 45 (420)
Q Consensus 5 ~~~p~~~i~GG-~kv~dki~~~~~l~~~~d~i~~gG~~a~~f 45 (420)
+.+|.++|+|| .|--|-=.+++.+.+.+|.|++.|--+..+
T Consensus 311 ~~~~~i~vlG~~~~~~d~~~l~~~~~~~~~~v~~~G~~~~~i 352 (418)
T PRK00683 311 VGNQVIVILGGRNKGCDFSSLLPVLRQTAKHVVAMGECRQEI 352 (418)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEECCCHHHH
Confidence 44688999998 566565577887777799999998654433
No 402
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=47.00 E-value=19 Score=38.89 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh-----hhhhccCCCe
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVASYPGK 303 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~-----~~~~~~~~~~ 303 (420)
....|||+||..|.++...++..| ...|+|+|+-|-- -++|+.-++.|+..-. ...+ ....
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l--~t~~ 110 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKIL--KTWK 110 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHH--HhCC
Confidence 478899999999999999999876 4579999987631 2345554555554321 1112 1223
Q ss_pred EeEEEEeCCCCCCCCc-chhh-h----hhHHHHHHHHHhhccCCeEEE
Q 014708 304 LILVSIQCPNPDFNRP-EHRW-R----MVQRSLVEAVSDLLVHDGKVF 345 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~-~~k~-R----l~~~~~l~~i~~~LkpgG~l~ 345 (420)
.|+|.- |..|.-. .+-+ . .+.-..|+.....|+.||.|.
T Consensus 111 advVLh---DgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 111 ADVVLH---DGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CcEEee---cCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 455532 2221111 0111 1 111355677888899999964
No 403
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=46.80 E-value=1.6e+02 Score=26.29 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+.+|.=||+|. |.-...+++.+ +++|+++|.+...-... ...+ + ...+..+++ ...|.|+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~----~~~~---~--~~~~l~ell--------~~aDiv~ 96 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGA----DEFG---V--EYVSLDELL--------AQADIVS 96 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHH----HHTT---E--EESSHHHHH--------HH-SEEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhc----cccc---c--eeeehhhhc--------chhhhhh
Confidence 467888898864 44445555555 78999999998865411 1111 2 334555543 2478998
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH-HHHHHHHHHHc
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-MLRMKQQFLEY 364 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~-~~~~~~~l~~~ 364 (420)
++.|.- .. .+.+++.++| ..||+|.+|+=..-..-. -+.+.+.+++.
T Consensus 97 ~~~plt--~~---T~~li~~~~l----~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 97 LHLPLT--PE---TRGLINAEFL----AKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp E-SSSS--TT---TTTSBSHHHH----HTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred hhhccc--cc---cceeeeeeee----eccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 887632 11 1224555554 588888877543211111 12355556654
No 404
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=46.79 E-value=2e+02 Score=29.31 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=55.1
Q ss_pred CEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE---cChhhhhhhhhccCCCeEeEE
Q 014708 232 PLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 232 ~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~---~Da~~~~~~~~~~~~~~~d~i 307 (420)
..||=.|+|. |..++.+|+..--..++..|.+++.++.|++ .|.. .+.. .+..+.+.+.. ....+|.+
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~--~~~g~Dvv 258 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQIL--GEPEVDCA 258 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHc--CCCCCcEE
Confidence 3343377753 4455667777544457777888887777755 3442 2221 12222112211 22357777
Q ss_pred EEeCCCC---CCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 308 SIQCPNP---DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 308 ~~~fpdp---~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+-.--.| |+.++.. + -....+++..+.+++||++.+.
T Consensus 259 id~~G~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 259 VDCVGFEARGHGHDGKK--E-APATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EECCCCccccccccccc--c-chHHHHHHHHHHhhCCCEEEEe
Confidence 5432222 1111100 0 1124788889999999999874
No 405
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.78 E-value=2e+02 Score=28.15 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEE-EEEcC----hhhhhhhhhccCCCeE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATN----ATSTFRSIVASYPGKL 304 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~-~~~~D----a~~~~~~~~~~~~~~~ 304 (420)
+..+|=.|+|. |..++.+|+......++.++-+++..+.+++ .+..++- ....+ ...+ .... ....+
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~-~~~~--~~~~~ 235 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKI-AELL--GGKGP 235 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHH-HHHh--CCCCC
Confidence 44555578776 7778888888643338999888877666643 2333211 11111 1112 2222 23457
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
|.++-.... ...+....+.|+++|+++..
T Consensus 236 d~vld~~g~--------------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 236 DVVIECTGA--------------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CEEEECCCC--------------HHHHHHHHHHhhcCCEEEEE
Confidence 877543111 13677888999999998764
No 406
>PRK07806 short chain dehydrogenase; Provisional
Probab=46.77 E-value=2.3e+02 Score=25.94 Aligned_cols=116 Identities=12% Similarity=0.054 Sum_probs=58.3
Q ss_pred CCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCCh-HHHHHHHHHhHHhCCCcEEEEEcChhhhhh--hhhc---cCCC
Q 014708 231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNG-KLVTHCRDSLQLSGITNGYFIATNATSTFR--SIVA---SYPG 302 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~-~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~--~~~~---~~~~ 302 (420)
+.++|=.|+ +|.++..+++. ..+.+|+++..+. ...+.....+...+ .++.++.+|+.+... ..+. ..-+
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 467888885 44566666554 2467899888764 33333333333323 368888999876521 1111 0113
Q ss_pred eEeEEEEeCCCCCCCCcchh-----hhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 303 KLILVSIQCPNPDFNRPEHR-----WRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 303 ~~d~i~~~fpdp~~k~~~~k-----~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
.+|.++.+..........+. .-.-.-.+++.+.+.++.+|.+++.+
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 57876554211100000000 00011356666666666667666543
No 407
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=46.74 E-value=1.5e+02 Score=30.48 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=39.7
Q ss_pred CEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 232 PLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 232 ~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
..||=||||. |...+....++-+.+|+..|.|.+.++++.... ..+++.++.|+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----GGKVEALQVDAADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----cccceeEEecccCh
Confidence 3578899964 444444433445689999999988877765543 23788889888775
No 408
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=46.38 E-value=1.9e+02 Score=28.07 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=56.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~-viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
+..||-.|+|. |..++.+|+.. +.+ +++++-++...+.+++ .+..++ .........+ .... ....+|.+
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~~~-~~~~--~~~~~d~v 231 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARE----LGADDTINPKEEDVEKV-RELT--EGRGADLV 231 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH----cCCCEEecCccccHHHH-HHHh--CCCCCCEE
Confidence 56677778876 77888888875 454 9999888876665532 343221 1111111111 1111 23347877
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+-. ..+ ...+..+.+.|+++|+++..
T Consensus 232 ld~-~g~-------------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 232 IEA-AGS-------------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred EEC-CCC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 543 111 24677888999999998764
No 409
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=45.73 E-value=2.1e+02 Score=28.61 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc----ChhhhhhhhhccCCCeE
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~----Da~~~~~~~~~~~~~~~ 304 (420)
.+..||=.|||. |..++.+|+..-..+++++|.+++.++.+++ .|... .+-.. +..+.+.+.. .+.+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~-~i~~~~~~~~~~~~v~~~~---~~g~ 256 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATD-CVNPNDYDKPIQEVIVEIT---DGGV 256 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCe-EEcccccchhHHHHHHHHh---CCCC
Confidence 356677778854 5566777877643479999999998877744 34322 11111 1111111111 2246
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 347 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~ 347 (420)
|.++-.-.. +..+....+.|+++ |++.+.
T Consensus 257 d~vid~~G~--------------~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 257 DYSFECIGN--------------VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CEEEECCCC--------------HHHHHHHHHHhhcCCCeEEEE
Confidence 766432111 24567777888886 887754
No 410
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=45.16 E-value=94 Score=28.72 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=42.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 290 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~ 290 (420)
++..+|=.| |+|.++..+++.. .+.+|++++.+...+....+.+...+..++.++..|+.
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 357788888 4667777666552 36799999999887766666655555456777777774
No 411
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=45.14 E-value=2e+02 Score=28.25 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=53.4
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..||=.|||. |..++.+|+..-...+++++.+++..+.+++ .|...+ .....+...+ .... ....+|.++
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~-~~~~--~~~~~d~~v 233 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQI-QSVL--RELRFDQLI 233 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHH-HHHh--cCCCCCeEE
Confidence 45666668754 4455667776633348999999988776633 343211 1111121111 1222 233466333
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+...- .+..+....+.|++||++.+.
T Consensus 234 ~d~~G-------------~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 234 LETAG-------------VPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EECCC-------------CHHHHHHHHHHhhcCCEEEEE
Confidence 32111 025778888999999999875
No 412
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=45.02 E-value=50 Score=24.77 Aligned_cols=42 Identities=12% Similarity=-0.022 Sum_probs=34.6
Q ss_pred HHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 330 LVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 330 ~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
-.+...+.|.+|..+.+.+|++.-.+.+...+++.|+.....
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEEE
Confidence 345667788999999999999888888999999999886543
No 413
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.82 E-value=1.6e+02 Score=29.63 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=43.4
Q ss_pred cHHHHHHHHh---CC--CCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCC
Q 014708 242 GLFLLGMARK---RK--DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 315 (420)
Q Consensus 242 G~~~~~lA~~---~P--~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~ 315 (420)
|.++...++. .| +..++++ ....+++|++.+++++++|.+. .+.-+++ . .+..+|.||+.-|+|.
T Consensus 15 g~ia~~f~~al~~~p~s~~~Ivav--a~~s~~~A~~fAq~~~~~~~k~-y~syEeL----a--kd~~vDvVyi~~~~~q 84 (351)
T KOG2741|consen 15 GRIARDFVRALHTLPESNHQIVAV--ADPSLERAKEFAQRHNIPNPKA-YGSYEEL----A--KDPEVDVVYISTPNPQ 84 (351)
T ss_pred hHHHHHHHHHhccCcccCcEEEEE--ecccHHHHHHHHHhcCCCCCcc-ccCHHHH----h--cCCCcCEEEeCCCCcc
Confidence 3444444443 46 5567766 4458899999999999876543 2333333 2 4778999999888876
No 414
>PRK07454 short chain dehydrogenase; Provisional
Probab=44.79 E-value=1.2e+02 Score=27.92 Aligned_cols=60 Identities=8% Similarity=0.027 Sum_probs=41.6
Q ss_pred CCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
...+|=.|+ +|.++..++++. .+.+|+.++.+++......+.....+ .++.++.+|+.+.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNP 67 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCH
Confidence 467888885 666666666652 36789999999876665555544332 4688899998764
No 415
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=44.79 E-value=1.9e+02 Score=33.66 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=48.4
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCe-------------EEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhh
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLN-------------FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSI 296 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~-------------viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~ 296 (420)
...|+=||||. |...+....+.|+.. ++-.|.+.+..+.+.+. .+++..+..|+.+. .+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~-----~~~~~~v~lDv~D~-e~L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEG-----IENAEAVQLDVSDS-ESL 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHh-----cCCCceEEeecCCH-HHH
Confidence 45799999984 777666666667755 78889987665544332 23555666665543 222
Q ss_pred hccCCCeEeEEEEeCCCCC
Q 014708 297 VASYPGKLILVSIQCPNPD 315 (420)
Q Consensus 297 ~~~~~~~~d~i~~~fpdp~ 315 (420)
.. .-..+|.|.+.-|..+
T Consensus 643 ~~-~v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 643 LK-YVSQVDVVISLLPASC 660 (1042)
T ss_pred HH-hhcCCCEEEECCCchh
Confidence 21 0024899888766554
No 416
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=44.78 E-value=1.7e+02 Score=28.20 Aligned_cols=108 Identities=14% Similarity=-0.009 Sum_probs=53.2
Q ss_pred CEEEEEcCCc-cHHHHH-HHHhCCCCeEEE-EeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 232 PLVVDIGSGN-GLFLLG-MARKRKDLNFLG-LEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 232 ~~vLDIGcG~-G~~~~~-lA~~~P~~~viG-iDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+|-=||||. |..... +.+..|+..+++ .|.+++.. ++.+.+.+.. -...|..++ + . ..|.|+
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a---~~~a~~~g~~---~~~~~~eel----l---~-~~D~Vv 72 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH---ADFIWGLRRP---PPVVPLDQL----A---T-HADIVV 72 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH---HHHHHhcCCC---cccCCHHHH----h---c-CCCEEE
Confidence 4577788875 443332 332247777775 47776543 3333333321 123444444 2 2 369988
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe-CcHHHHHHHHHHHHHcCCc
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t-d~~~~~~~~~~~l~~~g~~ 367 (420)
+.-|+.. .-+.+...|+.|-.+++.+ ......+++.+..++++..
T Consensus 73 i~tp~~~--------------h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 73 EAAPASV--------------LRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred ECCCcHH--------------HHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 8754432 1122344566666555432 1111235566666666644
No 417
>PRK08703 short chain dehydrogenase; Provisional
Probab=44.61 E-value=85 Score=28.86 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=40.0
Q ss_pred CCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChh
Q 014708 231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 290 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~ 290 (420)
+.++|=.|| +|.++..+++. ..+.+|+.++.+++.++...+.+.+.+...+.++..|..
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 66 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM 66 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence 467888895 56666666655 246789999999987766666554444334566777764
No 418
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=43.52 E-value=2e+02 Score=28.06 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=56.7
Q ss_pred CEEEEEcC--CccHHHHHHHHhCCCC-eEEEEeCChHHHHHHHHHhHHhCCCcEEEE-EcChhhhhhhhhccCCCeEeEE
Q 014708 232 PLVVDIGS--GNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 232 ~~vLDIGc--G~G~~~~~lA~~~P~~-~viGiDis~~~i~~A~~~~~~~~l~nv~~~-~~Da~~~~~~~~~~~~~~~d~i 307 (420)
..||=.|. |.|..++.+|+.. +. ++++++.+++..+.+++. .|...+--. ..+..+.+... .+..+|.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~---~~~gvd~v 228 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL---CPEGVDVY 228 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH---CCCCceEE
Confidence 56777775 6788888899886 55 799999998876666543 344332111 11222221221 12458877
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+-.... ..+....++|+++|+++..
T Consensus 229 id~~g~---------------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 229 FDNVGG---------------EISDTVISQMNENSHIILC 253 (345)
T ss_pred EECCCc---------------HHHHHHHHHhccCCEEEEE
Confidence 543111 2346778899999998863
No 419
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=43.33 E-value=77 Score=23.70 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=34.1
Q ss_pred HHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 331 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 331 l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
++...+-|++|..+.+.+|++...+.+...+++.|+....
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~ 55 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLIS 55 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEE
Confidence 4566778899999999999999888999999999988653
No 420
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=43.31 E-value=2.7e+02 Score=27.67 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=55.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeEeE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~d~ 306 (420)
+..||=.|+|. |..++.+|+......++++|.++...+.+++ .+.. .++.. +..+.+... ....+|.
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~---~~~~~d~ 257 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREI---TGGGVDY 257 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHH---hCCCCcE
Confidence 45666678764 6677778888644479999999887766643 3332 12211 111111111 1335777
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
++-....+ ..+..+.+.|+++|+++..
T Consensus 258 vld~~g~~--------------~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 258 ALDTTGVP--------------AVIEQAVDALAPRGTLALV 284 (365)
T ss_pred EEECCCCc--------------HHHHHHHHHhccCCEEEEe
Confidence 75431111 4677888899999998864
No 421
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=43.20 E-value=2.2e+02 Score=27.94 Aligned_cols=88 Identities=15% Similarity=0.061 Sum_probs=54.0
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..||=.|+| .|..++.+|+.. +.++++++.+++..+.+++ .|...+ + |..+. ....+|.++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~----~Ga~~v--i--~~~~~-------~~~~~d~~i 228 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA----LGAASA--G--GAYDT-------PPEPLDAAI 228 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----hCCcee--c--ccccc-------CcccceEEE
Confidence 35678888875 344566677775 5689999999887766644 443321 1 11110 123466654
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.. +.- ...+....+.|++||++.+.
T Consensus 229 ~~--~~~------------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 229 LF--APA------------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EC--CCc------------HHHHHHHHHhhCCCcEEEEE
Confidence 43 221 24677788899999999774
No 422
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=42.81 E-value=2.2e+02 Score=27.78 Aligned_cols=96 Identities=16% Similarity=0.119 Sum_probs=54.1
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..+|=.|+|. |..++.+|+.....++++++-++.....+++ .+...+ .....+.. .+.... ....+|.++
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~--~~~~vd~vl 236 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT--DGTGVDVVL 236 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc--CCCCCCEEE
Confidence 44455467765 6677888888643378888777766655543 343211 11111222 112222 234577775
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-.-.. ...+..+.+.|+++|.+...
T Consensus 237 d~~g~--------------~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 237 EMSGN--------------PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred ECCCC--------------HHHHHHHHHHhccCCEEEEE
Confidence 43111 24667788999999998764
No 423
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=42.42 E-value=3.1e+02 Score=26.46 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=60.1
Q ss_pred CccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCC
Q 014708 240 GNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN 317 (420)
Q Consensus 240 G~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k 317 (420)
|.|..+..||+. ..+.+++++|.+++.++...+ .|. . ...+..+. . ...|.|++..|++.
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----~g~---~-~~~s~~~~----~----~~advVil~vp~~~-- 64 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----AGA---Q-AAASPAEA----A----EGADRVITMLPAGQ-- 64 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----cCC---e-ecCCHHHH----H----hcCCEEEEeCCChH--
Confidence 556666666555 235689999999887665433 232 1 12233222 1 23588888777653
Q ss_pred CcchhhhhhHHHHH---HHHHhhccCCeEEEEE-eCcHHHHHHHHHHHHHcCCcee
Q 014708 318 RPEHRWRMVQRSLV---EAVSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLEYGKGKL 369 (420)
Q Consensus 318 ~~~~k~Rl~~~~~l---~~i~~~LkpgG~l~~~-td~~~~~~~~~~~l~~~g~~~~ 369 (420)
.+ +.++ ..+...+++|-.++-. |-.+.....+.+.+.++|...+
T Consensus 65 -------~~-~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~v 112 (288)
T TIGR01692 65 -------HV-ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFM 112 (288)
T ss_pred -------HH-HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 01 2344 4566677777655433 3345666777788888876543
No 424
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=42.25 E-value=1.3e+02 Score=27.92 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
.+..+|=.| |+|.++..++++. .+.+++.++.+.+.++...+.....+ .++.++.+|+.+.
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~ 73 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG-IDALWIAADVADE 73 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCH
Confidence 357788888 5677777777662 35689999999877766655554332 3578899998864
No 425
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.16 E-value=74 Score=32.93 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=32.9
Q ss_pred CcEEEEEcC-CccchHHHHHHHHHHhcCeEEEehHHHHHHHHh
Q 014708 7 KPYAAIIGG-GNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA 48 (420)
Q Consensus 7 ~p~~~i~GG-~kv~dki~~~~~l~~~~d~i~~gG~~a~~fl~a 48 (420)
+|.++|+|| .|-.|.-.+++.+.+.+|.+++-|-.+..+...
T Consensus 349 ~~~i~IlGg~~~~~d~~~~~~~l~~~~~~vi~~g~~~~~l~~~ 391 (459)
T PRK02705 349 GPVILIAGGEAKQGDDSAWLKQIKAKAAAVLLFGEAAPTLAQR 391 (459)
T ss_pred CCeEEEecCccCCCCHHHHHHHHHhheeEEEEECCCHHHHHHH
Confidence 478999998 667788788887777799999888877665443
No 426
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=42.11 E-value=2.9e+02 Score=26.94 Aligned_cols=96 Identities=10% Similarity=0.130 Sum_probs=58.6
Q ss_pred CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEE-EEc-ChhhhhhhhhccCCCeEe
Q 014708 230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IAT-NATSTFRSIVASYPGKLI 305 (420)
Q Consensus 230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~-~~~-Da~~~~~~~~~~~~~~~d 305 (420)
.+..||=.|+ |.|..++.+|+.. +.++++++.+++..+.++++ .|...+-- ... |..+.+.... ...+|
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---~~gvd 223 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF---PNGID 223 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC---CCCcE
Confidence 3567777786 6788888899875 66899999888876666542 34433211 111 2222212211 24577
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.++-.. ....+....++|+++|+++..
T Consensus 224 ~v~d~~---------------g~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 224 IYFDNV---------------GGKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEECC---------------CHHHHHHHHHHhccCcEEEEe
Confidence 775321 114567788999999998864
No 427
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=41.96 E-value=2.1e+02 Score=27.94 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=55.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEE-EEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~-~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..+|=.|+|. |..++.+|+......++.++.+++..+.+++ .|...+- ....+..+.+.... ....+|.++
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~--~~~~~d~v~ 237 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG--MTEGFDVGL 237 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc--CCCCCCEEE
Confidence 44455477765 6777888887643368888888876655543 3432211 11112212111111 234577775
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
-.... ...+..+.+.|+++|.+....
T Consensus 238 d~~g~--------------~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 238 EMSGA--------------PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred ECCCC--------------HHHHHHHHHHHhcCCEEEEEe
Confidence 42111 256777889999999988753
No 428
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.24 E-value=2.3e+02 Score=28.17 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=56.1
Q ss_pred CEEEEEcCCc-cHH-HHHHHHhCCCCeEEEEeCChHHHHHHHHHhHH-------hCC------CcEEEEEcChhhhhhhh
Q 014708 232 PLVVDIGSGN-GLF-LLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-------SGI------TNGYFIATNATSTFRSI 296 (420)
Q Consensus 232 ~~vLDIGcG~-G~~-~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~-------~~l------~nv~~~~~Da~~~~~~~ 296 (420)
..|.=||+|+ |.- +..++.. +..|+.+|.+++.++.+++++.+ .++ .++++. .|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a---- 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC---- 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH----
Confidence 4577788873 332 3333433 88999999999988877664431 221 122322 122111
Q ss_pred hccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 297 VASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 297 ~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+ ...|.|.-.-|... -+...++.++.+.++|+..|...|
T Consensus 81 v----~~aDlViEavpE~l---------~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 81 V----ADADFIQESAPERE---------ALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred h----cCCCEEEECCcCCH---------HHHHHHHHHHHHhCCCCeEEEECC
Confidence 1 23577766544332 133478899999999998655544
No 429
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=41.02 E-value=1.3e+02 Score=28.98 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=56.9
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..+|-+||| .|..+..+|+.. +.+++.++.+++..+.+++ .+...+ +..+-...... ....+|.++
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~----~~~~~d~vi 230 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADEV--VDSGAELDEQA----AAGGADVIL 230 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcEE--eccCCcchHHh----ccCCCCEEE
Confidence 35667778987 777778888875 5689999999887766633 232211 11111111011 123477765
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
-.... ...+..+.+.|+++|.++...
T Consensus 231 ~~~~~--------------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVVS--------------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCCc--------------HHHHHHHHHhcccCCEEEEEC
Confidence 43222 246777889999999988754
No 430
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.98 E-value=1.1e+02 Score=24.88 Aligned_cols=80 Identities=13% Similarity=0.001 Sum_probs=52.4
Q ss_pred EcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCC
Q 014708 237 IGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 316 (420)
Q Consensus 237 IGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~ 316 (420)
+-||.|..+..++++ .++.++++|+ ++.+......++ ++. ...+|.+.+. |.
T Consensus 5 l~C~~GaSSs~la~k------------------m~~~a~~~gi-~~~i~a~~~~e~-~~~----~~~~Dvill~---PQ- 56 (99)
T cd05565 5 VLCAGGGTSGLLANA------------------LNKGAKERGV-PLEAAAGAYGSH-YDM----IPDYDLVILA---PQ- 56 (99)
T ss_pred EECCCCCCHHHHHHH------------------HHHHHHHCCC-cEEEEEeeHHHH-HHh----ccCCCEEEEc---Ch-
Confidence 678999666655554 4455566777 477878777776 322 3357877664 32
Q ss_pred CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHH
Q 014708 317 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 354 (420)
Q Consensus 317 k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~ 354 (420)
- .-.++.+.+.+.+-|.-+...|...|.
T Consensus 57 -v---------~~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 57 -M---------ASYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred -H---------HHHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 1 135677778888888877778887776
No 431
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.94 E-value=1.5e+02 Score=25.12 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=44.9
Q ss_pred CCEEEEEcCCccHHHHH-HHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGNGLFLLG-MARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~-lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
..+|+|||-|-=.-... |+++ ...++++||.+. ++ + ..++|+..|..+-.-.. + ...|.|+.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~~i---Y-~~A~lIYS 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TA---P-EGLRFVVDDITNPNISI---Y-EGADLIYS 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cC---c-ccceEEEccCCCccHHH---h-hCccceee
Confidence 45899999886555443 4444 589999999987 11 1 45789999997631111 1 24688888
Q ss_pred eCCCC
Q 014708 310 QCPNP 314 (420)
Q Consensus 310 ~fpdp 314 (420)
.=|.|
T Consensus 77 iRppp 81 (129)
T COG1255 77 IRPPP 81 (129)
T ss_pred cCCCH
Confidence 76665
No 432
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=40.63 E-value=3.6e+02 Score=26.34 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=53.8
Q ss_pred EcCCc-cHHHHHHHHhCCC-CeEEEEeCChHHHHHHHHHhHHhC--CCcEEEEE-cChhhhhhhhhccCCCeEeEEEEeC
Q 014708 237 IGSGN-GLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSG--ITNGYFIA-TNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 237 IGcG~-G~~~~~lA~~~P~-~~viGiDis~~~i~~A~~~~~~~~--l~nv~~~~-~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
||||. |..+.......+- ..++.+|++++.+.--..-++... +.+.++.. .|..++ ...|.|++..
T Consensus 4 iGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l---------~~aDiVIita 74 (300)
T cd00300 4 IGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADA---------ADADIVVITA 74 (300)
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHh---------CCCCEEEEcC
Confidence 78876 5544443333332 479999998876533322222211 12334432 343222 1346666655
Q ss_pred CCCCCCCcchhhhhh--HHHHHHHHHhhcc---CCeEEEEEeCcHHHHHH
Q 014708 312 PNPDFNRPEHRWRMV--QRSLVEAVSDLLV---HDGKVFLQSDIEEVMLR 356 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~--~~~~l~~i~~~Lk---pgG~l~~~td~~~~~~~ 356 (420)
..|. +..+.+..++ +-.+++++.+.++ |+|.+++.|+..+...+
T Consensus 75 g~p~-~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~ 123 (300)
T cd00300 75 GAPR-KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTY 123 (300)
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHH
Confidence 4443 2222222222 2334444444433 89999998865554443
No 433
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=40.55 E-value=50 Score=32.72 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=31.1
Q ss_pred CcchhhhhhH-------------HHHHHHHHhhccCCeEEEEEeCcHHHHHHHHH-HHHH
Q 014708 318 RPEHRWRMVQ-------------RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ-QFLE 363 (420)
Q Consensus 318 ~~~~k~Rl~~-------------~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~-~l~~ 363 (420)
..|+..|.+| ..+|..+..+|+|||++.+-|-+ .+-+.+.. .|++
T Consensus 197 ~~hpatr~FQALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfH-SLEDRiVK~~f~~ 255 (305)
T TIGR00006 197 SIHPATRVFQAIRIYVNDELEELEEALQFAPNLLAPGGRLSIISFH-SLEDRIVKNFFRE 255 (305)
T ss_pred CCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecC-cHHHHHHHHHHHH
Confidence 3466666654 68899999999999999998833 33333443 3544
No 434
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=40.37 E-value=2.8e+02 Score=27.95 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=41.0
Q ss_pred CCEEEEEcCCccHHHHHHHHhCC-CCeEEE-EeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLG-LEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P-~~~viG-iDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
..+|.=||||.|..-+...++.| +..++| +|.+++ +|++.+++.|.+ ...|..+++ .+..+|.|+
T Consensus 3 ~~rVgViG~~~G~~h~~al~~~~~~~eLvaV~d~~~e---rA~~~A~~~gi~----~y~~~eell------~d~Di~~V~ 69 (343)
T TIGR01761 3 VQSVVVCGTRFGQFYLAAFAAAPERFELAGILAQGSE---RSRALAHRLGVP----LYCEVEELP------DDIDIACVV 69 (343)
T ss_pred CcEEEEEeHHHHHHHHHHHHhCCCCcEEEEEEcCCHH---HHHHHHHHhCCC----ccCCHHHHh------cCCCEEEEE
Confidence 46788899988865444344456 788888 476665 455555556653 346776663 244566666
Q ss_pred E
Q 014708 309 I 309 (420)
Q Consensus 309 ~ 309 (420)
+
T Consensus 70 i 70 (343)
T TIGR01761 70 V 70 (343)
T ss_pred e
Confidence 6
No 435
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=40.25 E-value=3.6e+02 Score=26.21 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=59.2
Q ss_pred CccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCC
Q 014708 240 GNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN 317 (420)
Q Consensus 240 G~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k 317 (420)
|.|..+..+|+. ....+++++|.+++..+.++ +.|. . ...+..+... .....|.|++.-|++.
T Consensus 7 GlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~----~~g~---~-~~~s~~~~~~-----~~~~advVi~~vp~~~-- 71 (299)
T PRK12490 7 GLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG----KLGI---T-ARHSLEELVS-----KLEAPRTIWVMVPAGE-- 71 (299)
T ss_pred cccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCCC---e-ecCCHHHHHH-----hCCCCCEEEEEecCch--
Confidence 445555555554 23568999999987765542 2232 2 2233333321 0112477777766652
Q ss_pred CcchhhhhhHHHHHHHHHhhccCCeEEEEE-eCcHHHHHHHHHHHHHcCCc
Q 014708 318 RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLEYGKG 367 (420)
Q Consensus 318 ~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~-td~~~~~~~~~~~l~~~g~~ 367 (420)
.-+.++..+...|++|-.++-. |-.+....++.+.+.+++..
T Consensus 72 --------~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (299)
T PRK12490 72 --------VTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH 114 (299)
T ss_pred --------HHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe
Confidence 1135666777778887655543 33455566677778887754
No 436
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=39.74 E-value=2.1e+02 Score=27.81 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=50.4
Q ss_pred CEEEEEcCCc-cH-HHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 232 PLVVDIGSGN-GL-FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 232 ~~vLDIGcG~-G~-~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
..|.=||+|. |. ++..+++......++++|.+++.++.+++ .+... . ...+..+. + ...|.|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~-~-~~~~~~~~----~----~~aDvVii 72 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD-R-VTTSAAEA----V----KGADLVIL 72 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc-e-ecCCHHHH----h----cCCCEEEE
Confidence 4577788876 22 23333333223479999999987766543 33211 1 11222211 1 24688877
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
.-|.+. ...+++.+...++++..+..
T Consensus 73 avp~~~-----------~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 73 CVPVGA-----------SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CCCHHH-----------HHHHHHHHHhhCCCCCEEEe
Confidence 655431 13667778888899886653
No 437
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=39.56 E-value=1.5e+02 Score=23.75 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=47.8
Q ss_pred EcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCC
Q 014708 237 IGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 316 (420)
Q Consensus 237 IGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~ 316 (420)
+-||+|..+..+++. .++.+.++|++ +.+.+.+..+.. . ....+|.|.+. |.
T Consensus 4 ~~Cg~G~sTS~~~~k------------------i~~~~~~~~~~-~~v~~~~~~~~~-~----~~~~~Diil~~---Pq- 55 (96)
T cd05564 4 LVCSAGMSTSILVKK------------------MKKAAEKRGID-AEIEAVPESELE-E----YIDDADVVLLG---PQ- 55 (96)
T ss_pred EEcCCCchHHHHHHH------------------HHHHHHHCCCc-eEEEEecHHHHH-H----hcCCCCEEEEC---hh-
Confidence 579999987766654 35556667764 888888887762 2 23457877664 32
Q ss_pred CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHH
Q 014708 317 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 353 (420)
Q Consensus 317 k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~ 353 (420)
- ...+.++.+.+.+.+.=+...|...|
T Consensus 56 ----v------~~~~~~i~~~~~~~~~pv~~I~~~~Y 82 (96)
T cd05564 56 ----V------RYMLDEVKKKAAEYGIPVAVIDMMDY 82 (96)
T ss_pred ----H------HHHHHHHHHHhccCCCcEEEcChHhc
Confidence 0 12345555555555554455666555
No 438
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=39.32 E-value=3.4e+02 Score=27.61 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=42.5
Q ss_pred cccCCCCCCEEEEEcCCccHHHHH----HHHh---CCCCeEEEEeC----ChHHHHHHHHHhHH----hCCCcEEEEE
Q 014708 224 AAYHDPAQPLVVDIGSGNGLFLLG----MARK---RKDLNFLGLEV----NGKLVTHCRDSLQL----SGITNGYFIA 286 (420)
Q Consensus 224 ~~f~~~~~~~vLDIGcG~G~~~~~----lA~~---~P~~~viGiDi----s~~~i~~A~~~~~~----~~l~nv~~~~ 286 (420)
+.+...+...|+|+|.|.|.--.. ||.+ -|..+++||+. +...++.+.+++.+ .|++ ..|..
T Consensus 104 eA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~-fef~~ 180 (374)
T PF03514_consen 104 EAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP-FEFHP 180 (374)
T ss_pred HHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc-EEEEe
Confidence 344433567899999999976444 4544 27789999999 88888888777543 3553 44444
No 439
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=39.01 E-value=74 Score=23.54 Aligned_cols=42 Identities=10% Similarity=-0.058 Sum_probs=33.8
Q ss_pred HHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 330 LVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 330 ~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
.+....+.|.+|..+.+.+|++...+.+...+++.|+....+
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 445667788899999999999998899999999999875544
No 440
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=38.96 E-value=1.4e+02 Score=28.53 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhh
Q 014708 244 FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW 323 (420)
Q Consensus 244 ~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~ 323 (420)
++..|.++.|+.+++|+|.++..++.|++ .|...- ...+ .+. + ...|.|++.-|-.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~--~~~~-~~~----~----~~~DlvvlavP~~--------- 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGIIDE--ASTD-IEA----V----EDADLVVLAVPVS--------- 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSE--EESH-HHH----G----GCCSEEEE-S-HH---------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeee--ccCC-HhH----h----cCCCEEEEcCCHH---------
Confidence 45677888889999999999998877754 343221 1121 111 1 2358887763321
Q ss_pred hhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 324 RMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 324 Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
...++++++...|++|..+.=.+
T Consensus 57 --~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 57 --AIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp --HHHHHHHHHHCGS-TTSEEEE--
T ss_pred --HHHHHHHHhhhhcCCCcEEEEeC
Confidence 22588999999999998776433
No 441
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=38.09 E-value=51 Score=31.20 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
.+..|.|||.|.|.++..+...- -....-+|++...+.-.+-..+.. -....++++|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa-~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAA-PGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcC-CcceEEecccccee
Confidence 46789999999999999988662 236777788877776665554432 34688888998764
No 442
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=37.95 E-value=2.4e+02 Score=27.15 Aligned_cols=83 Identities=17% Similarity=0.084 Sum_probs=45.8
Q ss_pred EEEEcCCc--cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 234 VVDIGSGN--GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 234 vLDIGcG~--G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
|.=||+|. |.++..|++. +.+|+++|.+++.++.+.+. +. +.....+. +. -...|.|++..
T Consensus 3 I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~----g~--~~~~~~~~-~~--------~~~aDlVilav 65 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER----GL--VDEASTDL-SL--------LKDCDLVILAL 65 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC----CC--cccccCCH-hH--------hcCCCEEEEcC
Confidence 44466654 3333334333 56899999999887766442 22 11111111 11 12468887765
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEE
Q 014708 312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 344 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l 344 (420)
|... ..++++++...++++-.+
T Consensus 66 p~~~-----------~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 66 PIGL-----------LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CHHH-----------HHHHHHHHHHhCCCCcEE
Confidence 5331 135677888888877544
No 443
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=37.93 E-value=2.3e+02 Score=23.28 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=49.9
Q ss_pred EcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCC
Q 014708 237 IGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 316 (420)
Q Consensus 237 IGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~ 316 (420)
+-||+|..+..+++. .++.++++|+ ++.+.+.+..++ .... ....+|.|.+. |.
T Consensus 6 lvCg~G~STSlla~k------------------~k~~~~e~gi-~~~i~a~~~~e~-~~~~--~~~~~DvIll~---PQ- 59 (104)
T PRK09590 6 IICAAGMSSSMMAKK------------------TTEYLKEQGK-DIEVDAITATEG-EKAI--AAAEYDLYLVS---PQ- 59 (104)
T ss_pred EECCCchHHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHH-HHhh--ccCCCCEEEEC---hH-
Confidence 789999988766654 2445556776 377777777765 2222 13357877664 21
Q ss_pred CCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHH
Q 014708 317 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 354 (420)
Q Consensus 317 k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~ 354 (420)
- | -.++++...+.+.|.-+...|...|.
T Consensus 60 ----i--~----~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 60 ----T--K----MYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred ----H--H----HHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 1 1 23455666666666655557777765
No 444
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=37.88 E-value=1.5e+02 Score=26.66 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHhhccCCeEEEEEe
Q 014708 329 SLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 329 ~~l~~i~~~LkpgG~l~~~t 348 (420)
+-+..+.+.|||||.|++..
T Consensus 92 ~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 92 RAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred HHHHHHHHhhccCCeEEEEe
Confidence 67788999999999999974
No 445
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.70 E-value=60 Score=23.84 Aligned_cols=39 Identities=13% Similarity=-0.028 Sum_probs=31.4
Q ss_pred HHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 332 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 332 ~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
....+-|.+|..+.+.+|++.....+...+++.|+....
T Consensus 17 ~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~ 55 (69)
T cd00291 17 KKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLE 55 (69)
T ss_pred HHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEE
Confidence 344556889999999999888788899999999988644
No 446
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=37.54 E-value=3.2e+02 Score=26.58 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=52.9
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCe-EEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~-viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
+..+|=.|+| .|..++.+|+.. +.+ +++++-++...+.+++ .+...+ .....+..+-+.... ....+|.+
T Consensus 162 g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~--~~~~~d~v 234 (340)
T TIGR00692 162 GKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT--DGEGVDVF 234 (340)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc--CCCCCCEE
Confidence 3444446765 466677788875 454 8888887766655533 343221 111122222111111 23457777
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+-.... ...+..+.+.|+++|+++..
T Consensus 235 ld~~g~--------------~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 235 LEMSGA--------------PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred EECCCC--------------HHHHHHHHHhhcCCCEEEEE
Confidence 543111 25677888999999998765
No 447
>PRK06125 short chain dehydrogenase; Provisional
Probab=37.47 E-value=1.6e+02 Score=27.35 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=48.2
Q ss_pred CCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh--hhhhccCCCeEeE
Q 014708 231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF--RSIVASYPGKLIL 306 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~--~~~~~~~~~~~d~ 306 (420)
+..+|=.|++ |.++..+++. ..+.+|++++.+++.++.+.+.+....-.++.++..|+.+.. ...+. .-+.+|.
T Consensus 7 ~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA-EAGDIDI 84 (259)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH-HhCCCCE
Confidence 4678888864 4455555443 236799999999887776666555443346888888887541 11221 1245777
Q ss_pred EEEe
Q 014708 307 VSIQ 310 (420)
Q Consensus 307 i~~~ 310 (420)
++.+
T Consensus 85 lv~~ 88 (259)
T PRK06125 85 LVNN 88 (259)
T ss_pred EEEC
Confidence 7554
No 448
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=37.27 E-value=68 Score=31.53 Aligned_cols=73 Identities=12% Similarity=0.232 Sum_probs=44.0
Q ss_pred EEEEEcChhhhhhhhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC----------cH
Q 014708 282 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----------IE 351 (420)
Q Consensus 282 v~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td----------~~ 351 (420)
|+|+-.|....++.- +...+-||.|++.+.--. ++.+ .+.++++|+|.|+++|- ..
T Consensus 202 VhFLPld~~~~L~~K-~ky~~~Fd~ifvs~s~vh---------~L~p----~l~~~~a~~A~LvvEtaKfmvdLrKEq~~ 267 (289)
T PF14740_consen 202 VHFLPLDSLEKLPHK-SKYQNFFDLIFVSCSMVH---------FLKP----ELFQALAPDAVLVVETAKFMVDLRKEQLQ 267 (289)
T ss_pred EEEeCchHHHHHhhH-HhhcCCCCEEEEhhhhHh---------hcch----HHHHHhCCCCEEEEEcchhheeCCHHHHH
Confidence 666666665543221 113567888887632110 1222 46789999999999872 24
Q ss_pred HHHHHHHHHHHHcCCce
Q 014708 352 EVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 352 ~~~~~~~~~l~~~g~~~ 368 (420)
.|.+.+.++..+.||..
T Consensus 268 ~F~~kv~eLA~~aG~~p 284 (289)
T PF14740_consen 268 EFVKKVKELAKAAGFKP 284 (289)
T ss_pred HHHHHHHHHHHHCCCcc
Confidence 45556777777777764
No 449
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=37.17 E-value=1.6e+02 Score=27.28 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
.+.++|=.| |+|.++..++++. .+.+|+.++.++..++...+.+...+ .++.++.+|+.+.
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~D~~~~ 71 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-LSAHALAFDVTDH 71 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-ceEEEEEccCCCH
Confidence 357788888 4677777776652 46799999999887766666554443 3578888888764
No 450
>PRK07677 short chain dehydrogenase; Provisional
Probab=37.09 E-value=1.5e+02 Score=27.43 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=38.2
Q ss_pred CEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhh
Q 014708 232 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 291 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~ 291 (420)
..+|=.|++.| ++..+++. -.+.+++.++.++..++...+.+...+ .++.++.+|+.+
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 45777787554 44444433 136789999999887766665554433 468889998865
No 451
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=36.96 E-value=1.4e+02 Score=29.55 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
.+..+.=||+|. |.-...+++.+ +++|+++|.+... ...+ +. ..+..++ + . .-|.|.
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f-gm~V~~~d~~~~~--------~~~~---~~--~~~l~el----l---~-~sDvv~ 201 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF-GAKVVYYSTSGKN--------KNEE---YE--RVSLEEL----L---K-TSDIIS 201 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc-CCEEEEECCCccc--------cccC---ce--eecHHHH----h---h-cCCEEE
Confidence 467889999986 77777777766 7899999986421 0111 22 2344444 3 2 358888
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 346 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~ 346 (420)
++.|-- .. -+.+++.+. ...||||.+|+=
T Consensus 202 lh~Plt--~~---T~~li~~~~----~~~Mk~~a~lIN 230 (311)
T PRK08410 202 IHAPLN--EK---TKNLIAYKE----LKLLKDGAILIN 230 (311)
T ss_pred EeCCCC--ch---hhcccCHHH----HHhCCCCeEEEE
Confidence 886532 11 123455555 457899888764
No 452
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=36.86 E-value=85 Score=30.94 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHH-HHH
Q 014708 328 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ-FLE 363 (420)
Q Consensus 328 ~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~-l~~ 363 (420)
..+|..+..+|+|||++.+-|-+ ..-+.+... |++
T Consensus 216 ~~~L~~~~~~L~~gGrl~visfH-SlEDriVK~~f~~ 251 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVISFH-SLEDRIVKRFFRE 251 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEEecC-cHHHHHHHHHHHH
Confidence 68899999999999999998843 333334433 544
No 453
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=36.69 E-value=1.8e+02 Score=26.98 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
++..+|=.|+ +|.++..+++.+ .+.+++.++.+++.+....+.+.+.+ .++.++.+|+.+.
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 72 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIADE 72 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCH
Confidence 3677888884 566666666552 47899999999877766655554444 3588889888764
No 454
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.41 E-value=1.8e+02 Score=26.51 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=41.7
Q ss_pred CCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
+..+|=.|+ +|.++..++++ ..+.+|+.++.++...+...+.....+ .++.++..|..+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 68 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDY 68 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCH
Confidence 456777884 77777777665 357799999999876665544443333 3688889988654
No 455
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=36.35 E-value=4.2e+02 Score=25.87 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=55.6
Q ss_pred EEEEEcCCc-cHHHHHHHHhCC-CCeEEEEeCChHHHHHHHHHhHHhC---CCcEEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 233 LVVDIGSGN-GLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 233 ~vLDIGcG~-G~~~~~lA~~~P-~~~viGiDis~~~i~~A~~~~~~~~---l~nv~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
.|.=||||. |..+...+.... ..+++.+|++++..+.....+...- ..+..+...+..++ ...|.|
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l---------~~aDIV 72 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDC---------KDADIV 72 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHh---------CCCCEE
Confidence 356688876 333333322322 2479999998876543333222211 12344444443322 246777
Q ss_pred EEeCCCCCCCCcchhhhhhH--HHHHHHHHhhc---cCCeEEEEEeCcHHHHH
Q 014708 308 SIQCPNPDFNRPEHRWRMVQ--RSLVEAVSDLL---VHDGKVFLQSDIEEVML 355 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~--~~~l~~i~~~L---kpgG~l~~~td~~~~~~ 355 (420)
++....|. +....+..+++ ..+++++.+.+ .|.|.+++.|+.-+...
T Consensus 73 Iitag~~~-~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~ 124 (306)
T cd05291 73 VITAGAPQ-KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVIT 124 (306)
T ss_pred EEccCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHH
Confidence 76654443 22222222222 23444444433 57899988886544433
No 456
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=36.32 E-value=3.2e+02 Score=26.19 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=56.4
Q ss_pred CCEEEEEc--CCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEE-EEEcChhhhhhhhhccCCCeEeEE
Q 014708 231 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 231 ~~~vLDIG--cG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~-~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
+..+|=.| -|.|..++.+|+.. +.++++++.+++..+.+++ .|...+- ....|....+... ....+|.+
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~---~~~gvd~v 215 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA---APDGIDCY 215 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH---CCCCcEEE
Confidence 55666666 46788888899885 6689999988887666644 3443211 1111222211111 12457776
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
+-.. ....+....+.|+++|+++..
T Consensus 216 ld~~---------------g~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 216 FDNV---------------GGEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EECC---------------CHHHHHHHHHhhccCCEEEEE
Confidence 5321 124567788999999998753
No 457
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.98 E-value=2e+02 Score=27.73 Aligned_cols=96 Identities=10% Similarity=0.155 Sum_probs=53.6
Q ss_pred EEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHh---C--------------CCcEEEEEcChhhhhh
Q 014708 234 VVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLS---G--------------ITNGYFIATNATSTFR 294 (420)
Q Consensus 234 vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~---~--------------l~nv~~~~~Da~~~~~ 294 (420)
|.=||+| ..+..+|.. .-+.+|+.+|.+++.++.+.++.... + ..++++. .|..+.
T Consensus 4 V~VIG~G--~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-- 78 (288)
T PRK09260 4 LVVVGAG--VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA-- 78 (288)
T ss_pred EEEECcc--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh--
Confidence 5556665 333333332 12578999999999999887653221 1 1122221 222221
Q ss_pred hhhccCCCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC
Q 014708 295 SIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 349 (420)
Q Consensus 295 ~~~~~~~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td 349 (420)
-...|.|+..-|+.. -+...++.++.+.++|+..+...|.
T Consensus 79 ------~~~aD~Vi~avpe~~---------~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 ------VADADLVIEAVPEKL---------ELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred ------hcCCCEEEEeccCCH---------HHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 123577776655542 1223667778888999877765443
No 458
>PRK06172 short chain dehydrogenase; Provisional
Probab=35.88 E-value=1.8e+02 Score=26.90 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=41.5
Q ss_pred CCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
+..+|=.|+ +|.++..++++. .+.+++.++.+++.+....+.+...+ .++.++.+|+.+.
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 68 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTRD 68 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 467888886 555666655542 25789999999887766665554433 3688899998764
No 459
>PRK11018 hypothetical protein; Provisional
Probab=35.67 E-value=87 Score=24.15 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=43.1
Q ss_pred CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeE
Q 014708 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 370 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~ 370 (420)
+..+|..-..+|-|. --.+...+.|++|..|.+.+|++.-.+.+...+++.|+....
T Consensus 8 ~~~lD~rG~~CP~Pv-------------l~~kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 8 DYRLDMVGEPCPYPA-------------VATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLD 64 (78)
T ss_pred CeeEECCCCcCCHHH-------------HHHHHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 345666666677774 234555678899999999999988888889999999987653
No 460
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=35.52 E-value=1.8e+02 Score=26.95 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=39.8
Q ss_pred CEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHh-CCCcEEEEEcChhhh
Q 014708 232 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATST 292 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~-~l~nv~~~~~Da~~~ 292 (420)
..+|=.| |+|.++..+++.+ .+.+++.+|.+....+...+.+... +..++.++.+|+.+.
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSE 65 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCH
Confidence 4577778 4566666666552 4679999999987665554443322 224688899998764
No 461
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=35.23 E-value=4.3e+02 Score=26.19 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=53.8
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcC----hhhhhhhhhccCCCeE
Q 014708 230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATN----ATSTFRSIVASYPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~D----a~~~~~~~~~~~~~~~ 304 (420)
.+..||=+|+| -|..++.+|+......++++|.+++.++.+++ .|... .+-..+ ....+.+.. .+.+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~~~~v~~~~---~~g~ 257 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATD-CVNPKDHDKPIQQVLVEMT---DGGV 257 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCE-EEcccccchHHHHHHHHHh---CCCC
Confidence 35666667864 34455667777643379999999998877643 34322 111111 222111111 2357
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 347 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~ 347 (420)
|.++-.-.. +..+....+.|+++ |++++.
T Consensus 258 d~vid~~g~--------------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 258 DYTFECIGN--------------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred cEEEECCCC--------------hHHHHHHHHhhccCCCeEEEE
Confidence 776432111 24667778899887 888764
No 462
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=35.10 E-value=1.8e+02 Score=26.15 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
+..|.=||+|+=.....+--+-...+|+--..+.. ..++++++.|+. ..+..+.. ..-|.|.+.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s---~s~~~A~~~Gf~-----v~~~~eAv--------~~aDvV~~L 67 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGS---ASWEKAKADGFE-----VMSVAEAV--------KKADVVMLL 67 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTC---HHHHHHHHTT-E-----CCEHHHHH--------HC-SEEEE-
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCC---cCHHHHHHCCCe-----eccHHHHH--------hhCCEEEEe
Confidence 56788899987655555544444567664444433 133444556642 33444331 246888888
Q ss_pred CCCCCCCCcchhhhhhHHHHH-HHHHhhccCCeEEEEEeCc
Q 014708 311 CPNPDFNRPEHRWRMVQRSLV-EAVSDLLVHDGKVFLQSDI 350 (420)
Q Consensus 311 fpdp~~k~~~~k~Rl~~~~~l-~~i~~~LkpgG~l~~~td~ 350 (420)
.||. .++++. +++...|+||-.|.|.+..
T Consensus 68 ~PD~-----------~q~~vy~~~I~p~l~~G~~L~fahGf 97 (165)
T PF07991_consen 68 LPDE-----------VQPEVYEEEIAPNLKPGATLVFAHGF 97 (165)
T ss_dssp S-HH-----------HHHHHHHHHHHHHS-TT-EEEESSSH
T ss_pred CChH-----------HHHHHHHHHHHhhCCCCCEEEeCCcc
Confidence 8775 344555 8899999999999997653
No 463
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=34.95 E-value=5.6e+02 Score=26.96 Aligned_cols=114 Identities=10% Similarity=-0.066 Sum_probs=61.5
Q ss_pred EEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeCCC
Q 014708 236 DIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 313 (420)
Q Consensus 236 DIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~fpd 313 (420)
=||.| ..+..||++ ....+|++.|.+++.++...+.....+. ++. ...+..++... -...|.|++.-|+
T Consensus 6 vIGLG--~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~i~-~~~s~~e~v~~-----l~~~d~Iil~v~~ 76 (470)
T PTZ00142 6 LIGLA--VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT-RVK-GYHTLEELVNS-----LKKPRKVILLIKA 76 (470)
T ss_pred EEeEh--HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC-cce-ecCCHHHHHhc-----CCCCCEEEEEeCC
Confidence 34555 333333333 2356899999999998777654333232 222 23344443210 0134666665455
Q ss_pred CCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEeC-cHHHHHHHHHHHHHcCCce
Q 014708 314 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFLEYGKGK 368 (420)
Q Consensus 314 p~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~td-~~~~~~~~~~~l~~~g~~~ 368 (420)
+. .-.++++.+...|++|-.++-.+. .+.--....+.+.+.|...
T Consensus 77 ~~----------~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~f 122 (470)
T PTZ00142 77 GE----------AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILY 122 (470)
T ss_pred hH----------HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence 42 113677888888988866544332 2333344556677777654
No 464
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.86 E-value=1.9e+02 Score=26.24 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=62.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhh--hhhhcc---CCCe
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF--RSIVAS---YPGK 303 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~--~~~~~~---~~~~ 303 (420)
+..+|=.|++ |.++..+++.. .+.+|++++.+++......+..... .++.++.+|..+.. .+.+.. .-+.
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 4678888885 55666555552 4779999999988766554444332 36888899887641 111100 0134
Q ss_pred EeEEEEeCCCCCCCCcchhh---hhhH------HHHHHHHHhhccCCeEEEEEe
Q 014708 304 LILVSIQCPNPDFNRPEHRW---RMVQ------RSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 304 ~d~i~~~fpdp~~k~~~~k~---Rl~~------~~~l~~i~~~LkpgG~l~~~t 348 (420)
+|.++.+-..-+....+... +.++ -.+++.+...++++|.+++.+
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 67765543221111101000 0010 134556666777888877765
No 465
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=34.83 E-value=3.7e+02 Score=25.22 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=54.7
Q ss_pred CCCEEEEEcC--CccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeE
Q 014708 230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 230 ~~~~vLDIGc--G~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~ 306 (420)
.+..++-.|| +.|..++.+|+.. +..++.++.+++..+.+++ .+..++ .....+....+.... ....+|.
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~--~~~~~d~ 211 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT--GGRGVDV 211 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc--CCCCcEE
Confidence 3578888998 4566677777764 5679999999887766633 343221 111112211111111 2345777
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
++-... ...+..+.+.|+++|.+...
T Consensus 212 v~~~~g---------------~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 212 VYDPVG---------------GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred EEECcc---------------HHHHHHHHHhhccCCEEEEE
Confidence 654311 13455667888999988754
No 466
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=34.74 E-value=2.1e+02 Score=28.39 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=60.0
Q ss_pred CCEEEEEc--CCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEE
Q 014708 231 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV 307 (420)
Q Consensus 231 ~~~vLDIG--cG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i 307 (420)
+..||=.| -|-|.+++.||+..-. +++++--|++-.+.+ .+.|... +.+...|..+-..+.. ....+|.|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t--~g~gvDvv 215 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT--GGKGVDVV 215 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc--CCCCceEE
Confidence 56777777 5678889999999643 777777777554433 3344332 2333444444333322 23468888
Q ss_pred EEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 308 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 308 ~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
+-. +..+.+....+.|+++|+++..-
T Consensus 216 ~D~---------------vG~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 216 LDT---------------VGGDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred EEC---------------CCHHHHHHHHHHhccCCEEEEEe
Confidence 653 22367777889999999998753
No 467
>PLN02702 L-idonate 5-dehydrogenase
Probab=34.70 E-value=4e+02 Score=26.30 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=55.2
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEE---cChhhhhhhhhccCCCeEeE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~---~Da~~~~~~~~~~~~~~~d~ 306 (420)
+..+|=+|+| .|..++.+|+...-..++.+|.++...+.+++ .+...+.... .+....+...-......+|.
T Consensus 182 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 257 (364)
T PLN02702 182 ETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKAMGGGIDV 257 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhhcCCCCCE
Confidence 4556666875 36667778887644468999998877665543 3443222111 12222111110001235777
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
++-.-.. ...+....+.|+++|+++..
T Consensus 258 vid~~g~--------------~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 258 SFDCVGF--------------NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred EEECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 6543111 14678888999999998754
No 468
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=34.43 E-value=3.8e+02 Score=25.96 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=52.9
Q ss_pred EEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHh-C-----------CCcEEEEEcChhhhhhhhhccC
Q 014708 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-G-----------ITNGYFIATNATSTFRSIVASY 300 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~-~-----------l~nv~~~~~Da~~~~~~~~~~~ 300 (420)
.|.=||+|.=...+...-...+..|+++|.+++.++.+++.+.+. + +.++++ ..|..+.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~-------- 76 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA-------- 76 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH--------
Confidence 466678875333222222234678999999999988887653221 1 112222 2232221
Q ss_pred CCeEeEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEEe
Q 014708 301 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 348 (420)
Q Consensus 301 ~~~~d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~t 348 (420)
-...|.|+...|+.. .....++.++...++++-.+...|
T Consensus 77 ~~~aDlVi~av~~~~---------~~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 77 VSGADLVIEAVPEKL---------ELKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred hccCCEEEEeccCcH---------HHHHHHHHHHHHhCCCCcEEEECC
Confidence 124588877655442 012367777777777665554333
No 469
>PRK07814 short chain dehydrogenase; Provisional
Probab=34.01 E-value=2e+02 Score=26.88 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
++..+|=.|. +|.++.++++. ..+++|++++.+++.++...+.....+ .++.++.+|..+.
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 71 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHP 71 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 3577888884 66666666654 246799999999877766555544333 3588888888764
No 470
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=33.52 E-value=5.3e+02 Score=28.03 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHh-----C---CCcEEEEEcChhhhhhhhhcc
Q 014708 230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLS-----G---ITNGYFIATNATSTFRSIVAS 299 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~-----~---l~nv~~~~~Da~~~~~~~~~~ 299 (420)
++.++|=.|+ +|.++..++++ ..+.+|++++.+.+.+....+.+.+. + ..++.++.+|+.+.. .+..
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e-sI~~- 155 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD-QIGP- 155 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH-HHHH-
Confidence 4567887876 45566665554 23678999999887765554433321 1 135889999998752 2110
Q ss_pred CCCeEeEEEEe
Q 014708 300 YPGKLILVSIQ 310 (420)
Q Consensus 300 ~~~~~d~i~~~ 310 (420)
.-+.+|.|+.+
T Consensus 156 aLggiDiVVn~ 166 (576)
T PLN03209 156 ALGNASVVICC 166 (576)
T ss_pred HhcCCCEEEEc
Confidence 11346776554
No 471
>PRK05867 short chain dehydrogenase; Provisional
Probab=33.38 E-value=1.9e+02 Score=26.81 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 230 AQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 230 ~~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
++.++|=.|+++ .++..++++. .+.+++.++.+++.++...+.+...+ .++.++.+|+.+.
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 70 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQH 70 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCH
Confidence 357889899754 4444444442 36789999999887776666555444 4578888888764
No 472
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=33.11 E-value=64 Score=32.06 Aligned_cols=36 Identities=33% Similarity=0.331 Sum_probs=26.2
Q ss_pred HHHHHHHHhhccCCeEEEEEeCcHHHHHHH-HHHHHHc
Q 014708 328 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRM-KQQFLEY 364 (420)
Q Consensus 328 ~~~l~~i~~~LkpgG~l~~~td~~~~~~~~-~~~l~~~ 364 (420)
..+|..+..+|+|||++.+-|=+ ..-+.+ .+.|.+.
T Consensus 221 ~~~L~~a~~~L~~gGrl~VISFH-SLEDRiVK~~f~~~ 257 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVVISFH-SLEDRIVKQFFREL 257 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESS-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCcEEEEEEec-chhhHHHHHHHHHh
Confidence 67899999999999999998844 444444 4445543
No 473
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=33.05 E-value=2.5e+02 Score=28.38 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc----ChhhhhhhhhccCCCeE
Q 014708 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKL 304 (420)
Q Consensus 230 ~~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~----Da~~~~~~~~~~~~~~~ 304 (420)
.+..+.=+|||. |...+.-|+..-...++++|++++-++.|++. |.. .++.. |+.+...+. .+.-.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GAT--~~vn~~~~~~vv~~i~~~---T~gG~ 255 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GAT--HFVNPKEVDDVVEAIVEL---TDGGA 255 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CCc--eeecchhhhhHHHHHHHh---cCCCC
Confidence 467888999975 66677778888888999999999999888663 322 22221 333332222 23345
Q ss_pred eEEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 305 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 305 d~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
|..+-.-- +.+.+++....+.++|...+.
T Consensus 256 d~~~e~~G--------------~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 256 DYAFECVG--------------NVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred CEEEEccC--------------CHHHHHHHHHHHhcCCeEEEE
Confidence 55432200 126778888888889988774
No 474
>PRK06949 short chain dehydrogenase; Provisional
Probab=32.87 E-value=2.2e+02 Score=26.29 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=41.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
+..+|=.| |+|.++..+++.+ .+.+|++++.+++.++.........+ .++.++.+|+.+.
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 70 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG-GAAHVVSLDVTDY 70 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCH
Confidence 56788888 6666776666653 36789999999887766655543332 3578888888653
No 475
>PRK07576 short chain dehydrogenase; Provisional
Probab=32.85 E-value=2.2e+02 Score=26.72 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=40.6
Q ss_pred CCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
+..+|=.| |+|.++..+++. ..+++|+.++.+++.+....+.....+ .++.++..|+.+.
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~ 70 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRDY 70 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCCH
Confidence 46677777 566676666654 346789999999887765554444333 3577888888653
No 476
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=32.42 E-value=2.2e+02 Score=31.03 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=39.5
Q ss_pred CEEEEEcCCccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEe
Q 014708 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 310 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~ 310 (420)
.+|| +-||+|--+..+++. ..++.++++|++ +...++|+.+. + .....+|.+...
T Consensus 507 mKIL-vaCGsGiGTStmva~-----------------kIkk~Lke~GI~-veV~~~~Vsev-~----s~~~~aDIIVtt 561 (602)
T PRK09548 507 VRIL-AVCGQGQGSSMMMKM-----------------KIKKYLDKRGIP-IIMDSCAVNDY-K----GKLETIDIIVCS 561 (602)
T ss_pred cEEE-EECCCCchHHHHHHH-----------------HHHHHHHHcCCC-eEEEEechHhC-c----ccCCCCCEEEEc
Confidence 4455 889999999888775 356667788885 78889999876 2 123457877664
No 477
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=32.40 E-value=2.9e+02 Score=28.00 Aligned_cols=41 Identities=22% Similarity=0.111 Sum_probs=28.9
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHH
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 272 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~ 272 (420)
+..++=+|+| .|..++..++.. +.+++.+|.++..++.+.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDA 208 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH
Confidence 3457888888 556666666665 4589999999877655543
No 478
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.32 E-value=1.3e+02 Score=30.98 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=28.1
Q ss_pred CCcEEEEEcCC-ccchHHHHHHHHHHhcCeEEEehHHHHHHH
Q 014708 6 EKPYAAIIGGG-NLCNKAAALHFLASRCDGLIFVGLMSFQIM 46 (420)
Q Consensus 6 ~~p~~~i~GG~-kv~dki~~~~~l~~~~d~i~~gG~~a~~fl 46 (420)
.+|.++|+||. |-.|-=.+++.+.+.+|.+++.|.-+..+.
T Consensus 342 ~~~~i~IlGg~~~~~~~~~~~~~l~~~~~~vil~G~~~~~l~ 383 (445)
T PRK04308 342 QNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIR 383 (445)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHhCcEEEEECCCHHHHH
Confidence 35789999987 665655555555556899988887554443
No 479
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=32.29 E-value=3.7e+02 Score=26.29 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=53.7
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcE-EEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv-~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+..+|=.|+| .|..++.+|+...-..++.++.+++..+.+++ .|...+ .....+..+.+.+.. ....+|.++
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~--~~~~~d~vi 246 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT--GGGGVDVSF 246 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh--CCCCCCEEE
Confidence 4555556653 35556667777533389999999887776643 243211 111122222112221 233478775
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
-.... ...++...+.|+++|.++..
T Consensus 247 d~~g~--------------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 247 DCAGV--------------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred ECCCC--------------HHHHHHHHHhccCCCEEEEE
Confidence 43111 14567788899999988764
No 480
>PRK08643 acetoin reductase; Validated
Probab=32.27 E-value=2.1e+02 Score=26.42 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=39.7
Q ss_pred CEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 232 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
.++|=.|+. |.++..+++.. .+.+++.++.+++.++.....+...+ .++.++.+|+.+.
T Consensus 3 k~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 63 (256)
T PRK08643 3 KVALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDR 63 (256)
T ss_pred CEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 456666744 44555555542 36789999999887776666654433 4688889998764
No 481
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=32.12 E-value=3.6e+02 Score=26.63 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=55.2
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeEeE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~d~ 306 (420)
+..+|=.|+| .|..++.+|+...-..+++++.++...+.++ ..+.. .++.. +...-+.... ....+|.
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~~--~~~~vd~ 254 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDLT--DGRGADY 254 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHHc--CCCCCCE
Confidence 4566666875 5777888888864335999998888766553 23432 22222 2211111111 2345786
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
++-. ... ...+..+.+.|+++|++...
T Consensus 255 vld~-~~~-------------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 255 AFEA-VGR-------------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEEc-CCC-------------hHHHHHHHHHhhcCCeEEEE
Confidence 6432 111 15677888999999998754
No 482
>PRK08251 short chain dehydrogenase; Provisional
Probab=32.11 E-value=2.4e+02 Score=25.91 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=41.5
Q ss_pred CEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhC-CCcEEEEEcChhhh
Q 014708 232 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATST 292 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~-l~nv~~~~~Da~~~ 292 (420)
..+|=.| |+|.++..+++++ -+.+++.++.+++.++.....+.... -.++.++.+|+.+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH 65 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCH
Confidence 4577778 4677777776663 24689999999887766655544332 23688999998865
No 483
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=32.10 E-value=81 Score=23.54 Aligned_cols=41 Identities=5% Similarity=-0.026 Sum_probs=33.9
Q ss_pred HHHHHhhccCCeEEEEEeCcHHHHHHHHHHHHHcCCceeEe
Q 014708 331 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 371 (420)
Q Consensus 331 l~~i~~~LkpgG~l~~~td~~~~~~~~~~~l~~~g~~~~~~ 371 (420)
++...+.|.+|..+.+.+|++...+.+...+++.|+.....
T Consensus 16 ~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~ 56 (69)
T cd03423 16 LHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQ 56 (69)
T ss_pred HHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEE
Confidence 45566788899999999999888888999999999886543
No 484
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=32.05 E-value=4.2e+02 Score=26.12 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=53.9
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc---ChhhhhhhhhccCCCeEeE
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~---Da~~~~~~~~~~~~~~~d~ 306 (420)
+..+|=.|+| .|..++.+|+...-..++.++-++...+.+++ .+... ++.. +...-+.... ....+|.
T Consensus 188 g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~~--v~~~~~~~~~~~l~~~~--~~~~~d~ 259 (367)
T cd08263 188 GETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGATH--TVNAAKEDAVAAIREIT--GGRGVDV 259 (367)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCce--EecCCcccHHHHHHHHh--CCCCCCE
Confidence 3445545764 56667778887653449999988877665533 34321 2211 2111111111 2345787
Q ss_pred EEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 307 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
++-.... ...+..+.++|+++|+++..
T Consensus 260 vld~vg~--------------~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 260 VVEALGK--------------PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEEeCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 7543211 12667788899999998754
No 485
>PRK06181 short chain dehydrogenase; Provisional
Probab=31.91 E-value=2.2e+02 Score=26.41 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=38.1
Q ss_pred EEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 233 LVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 233 ~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
.+|=.|+ +|.++..+++. ..+.+|++++.++...+...+.+...+ .++.++.+|+.+.
T Consensus 3 ~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 62 (263)
T PRK06181 3 VVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-GEALVVPTDVSDA 62 (263)
T ss_pred EEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 4666664 45566655543 246799999999877665555544433 3688889998764
No 486
>PRK08507 prephenate dehydrogenase; Validated
Probab=31.85 E-value=2.2e+02 Score=27.28 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=45.7
Q ss_pred EEEEcCCc--cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEEeC
Q 014708 234 VVDIGSGN--GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 311 (420)
Q Consensus 234 vLDIGcG~--G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~~f 311 (420)
|.=||+|. |.++..|.+......++++|.+++.++.+++ .|... . ..+..+. .. .|.|++.-
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~--------~~-aD~Vilav 66 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVD--E-IVSFEEL--------KK-CDVIFLAI 66 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCc--c-cCCHHHH--------hc-CCEEEEeC
Confidence 44467664 3334444444334579999999987766532 33311 0 1122211 12 68888775
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014708 312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 345 (420)
Q Consensus 312 pdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~ 345 (420)
|+.. ..+++.++.. ++++..+.
T Consensus 67 p~~~-----------~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 67 PVDA-----------IIEILPKLLD-IKENTTII 88 (275)
T ss_pred cHHH-----------HHHHHHHHhc-cCCCCEEE
Confidence 5432 1366777777 87776444
No 487
>PRK06914 short chain dehydrogenase; Provisional
Probab=30.83 E-value=2.4e+02 Score=26.46 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=39.3
Q ss_pred CCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCC-CcEEEEEcChhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATST 292 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l-~nv~~~~~Da~~~ 292 (420)
+..+|=.|+ +|.++..+++. .-+.++++++.+++.++...+.....+. .++.++.+|+.+.
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ 66 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH
Confidence 356777785 34445544433 2367899999888777665554444343 3689999999774
No 488
>PRK08339 short chain dehydrogenase; Provisional
Probab=30.81 E-value=2.4e+02 Score=26.53 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=40.9
Q ss_pred CCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
+.++|=.|+++| ++..+|++ ..+.+|+.++.+++.++.+.+.+....-.++.++.+|+.+.
T Consensus 8 ~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 8 GKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKR 70 (263)
T ss_pred CCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH
Confidence 567788887654 44444444 13678999999988777666655433224688899998764
No 489
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=30.79 E-value=5.3e+02 Score=25.41 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=62.1
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCC-eEEEEeCChHHH-HHHHHHhHHhCC-CcEEEEEcChhhhhhhhhccCCCeEeE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDL-NFLGLEVNGKLV-THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLIL 306 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~-~viGiDis~~~i-~~A~~~~~~~~l-~nv~~~~~Da~~~~~~~~~~~~~~~d~ 306 (420)
+..|.=||+|. |.....+....+-. .++-+|++++.+ ..+....+.... .++.+...|..++ . ..|.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~-------~--~adi 76 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC-------K--DADL 76 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHh-------C--CCCE
Confidence 56889999977 66555544444433 699999987754 333333222211 3455554554332 1 3466
Q ss_pred EEEeCCCCCCCCcchhhhhh--HHHHHHHHHhhcc---CCeEEEEEeCcHHHHH
Q 014708 307 VSIQCPNPDFNRPEHRWRMV--QRSLVEAVSDLLV---HDGKVFLQSDIEEVML 355 (420)
Q Consensus 307 i~~~fpdp~~k~~~~k~Rl~--~~~~l~~i~~~Lk---pgG~l~~~td~~~~~~ 355 (420)
|.+..--|. +....+..++ +..+++++...++ |+|.+++.|+..+...
T Consensus 77 vIitag~~~-k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~ 129 (315)
T PRK00066 77 VVITAGAPQ-KPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILT 129 (315)
T ss_pred EEEecCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHH
Confidence 655433332 2222222222 2455566555554 7999998886544433
No 490
>PRK07024 short chain dehydrogenase; Provisional
Probab=30.75 E-value=1.8e+02 Score=27.05 Aligned_cols=58 Identities=10% Similarity=0.000 Sum_probs=38.4
Q ss_pred CEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 232 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
.++|=.|+ +|.++..+++.. .+.+++.++.+++.++...+.+...+ ++.++.+|+.+.
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~ 62 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDA 62 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCH
Confidence 34566675 556666665552 36799999999877765544433222 788999999764
No 491
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=30.69 E-value=2.7e+02 Score=27.13 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=52.0
Q ss_pred CEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCc-EEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 232 PLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 232 ~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~n-v~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
..+|=.|+|. |..++.+|+.....++++++.++.....+++ .+... +.....+....+.... ....+|.++-
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~--~~~~~d~vld 241 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT--DGRGVDVVIE 241 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh--CCCCCCEEEE
Confidence 3333366632 3345667777654678889998877665543 34322 1222222211112222 2345787753
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
.... +..+..+.+.|+++|+++..
T Consensus 242 ~~g~--------------~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 242 AVGI--------------PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCC--------------HHHHHHHHHhccCCcEEEEe
Confidence 2111 14567778999999998753
No 492
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=30.61 E-value=5e+02 Score=25.65 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=52.7
Q ss_pred CCEEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEc----ChhhhhhhhhccCCCeEe
Q 014708 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKLI 305 (420)
Q Consensus 231 ~~~vLDIGcG-~G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~----Da~~~~~~~~~~~~~~~d 305 (420)
+..||=.|+| .|..++.+|+.....++++++.+++..+.+++ .|...+ +... +..+.+.+.. .+.+|
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~-i~~~~~~~~~~~~v~~~~---~~~~d 259 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEF-VNPKDHDKPVQEVIAEMT---GGGVD 259 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceE-EcccccchhHHHHHHHHh---CCCCC
Confidence 5666667764 24445667777644479999999988777643 443221 1111 1111111211 23567
Q ss_pred EEEEeCCCCCCCCcchhhhhhHHHHHHHHHhhccCC-eEEEEE
Q 014708 306 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 347 (420)
Q Consensus 306 ~i~~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~Lkpg-G~l~~~ 347 (420)
.++-. .-. ...+....+.+++| |++++.
T Consensus 260 ~vid~-~G~-------------~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 260 YSFEC-TGN-------------IDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred EEEEC-CCC-------------hHHHHHHHHHhhcCCCEEEEE
Confidence 65432 110 25667778899996 888764
No 493
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.52 E-value=2.5e+02 Score=25.58 Aligned_cols=59 Identities=19% Similarity=0.094 Sum_probs=40.1
Q ss_pred CCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 291 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~ 291 (420)
+..+|=.|+ +|.++..+++.. .+.+++.++.++..++.+.+.+...+ .++.+++.|+.+
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 65 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTD 65 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 466888886 455555555542 35789999999887766666554433 367888888765
No 494
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=30.19 E-value=2e+02 Score=28.74 Aligned_cols=86 Identities=10% Similarity=0.159 Sum_probs=50.5
Q ss_pred CCEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEE
Q 014708 231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 308 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~ 308 (420)
+.++-=| |.|.++...|++ .=+++++..|.++. ....+. -+.+++. ..+++ ...|.|.
T Consensus 146 gktvGIi--G~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~------~~~~y~~--l~ell--------~~sDii~ 205 (324)
T COG1052 146 GKTLGII--GLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKE------LGARYVD--LDELL--------AESDIIS 205 (324)
T ss_pred CCEEEEE--CCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhh------cCceecc--HHHHH--------HhCCEEE
Confidence 4555555 456677776666 23689999999875 212111 1234443 43332 2569999
Q ss_pred EeCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEE
Q 014708 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 345 (420)
Q Consensus 309 ~~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~ 345 (420)
++.|.-+ . -+.+++.+. ...||||++|+
T Consensus 206 l~~Plt~--~---T~hLin~~~----l~~mk~ga~lV 233 (324)
T COG1052 206 LHCPLTP--E---TRHLINAEE----LAKMKPGAILV 233 (324)
T ss_pred EeCCCCh--H---HhhhcCHHH----HHhCCCCeEEE
Confidence 9976543 2 223555454 45889988885
No 495
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=29.71 E-value=99 Score=31.38 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCCeE----EEEeCChHHHHHHHHHhHHhCCCcEEEEEcChh
Q 014708 244 FLLGMARKRKDLNF----LGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 290 (420)
Q Consensus 244 ~~~~lA~~~P~~~v----iGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~ 290 (420)
-++.+|+++|+..| +|+|-...++..+...+.+.+++|+.++...-.
T Consensus 126 dAl~iA~~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl 176 (369)
T TIGR00075 126 DALKIAKENPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRL 176 (369)
T ss_pred HHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 36789999999876 488889999999999999999999998887654
No 496
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=29.68 E-value=99 Score=31.32 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCCeE----EEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhh--hhhhhccCCCeEeEE
Q 014708 244 FLLGMARKRKDLNF----LGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLILV 307 (420)
Q Consensus 244 ~~~~lA~~~P~~~v----iGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~--~~~~~~~~~~~~d~i 307 (420)
-++.+|+++|+..| +|+|-...++..+...+.+.+++|+.++...-.-- +...+..++..+|.+
T Consensus 120 dAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgf 189 (364)
T PRK15062 120 DALKIARENPDKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGF 189 (364)
T ss_pred HHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEE
Confidence 36789999999876 58888889999998889999999999988765431 112232234456665
No 497
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=29.62 E-value=2e+02 Score=28.24 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=39.3
Q ss_pred EEEEEcCCc-cHHH-HHHHHhCCCCeEEE-EeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 233 LVVDIGSGN-GLFL-LGMARKRKDLNFLG-LEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 233 ~vLDIGcG~-G~~~-~~lA~~~P~~~viG-iDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
.+.=||||. |... ..+.+ .|+..+.+ +|++++.... +.+.+.|. .....|...++ .+..+|.|++
T Consensus 3 rVAIIG~G~IG~~h~~~ll~-~~~~elvaV~d~d~es~~l--a~A~~~Gi---~~~~~~~e~ll------~~~dIDaV~i 70 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLR-SEHLEMVAMVGIDPESDGL--ARARELGV---KTSAEGVDGLL------ANPDIDIVFD 70 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHh-CCCcEEEEEEeCCcccHHH--HHHHHCCC---CEEECCHHHHh------cCCCCCEEEE
Confidence 356689977 5533 44443 67777776 4777654322 22333453 33345555553 2446899988
Q ss_pred eCCCC
Q 014708 310 QCPNP 314 (420)
Q Consensus 310 ~fpdp 314 (420)
.-|+.
T Consensus 71 aTp~~ 75 (285)
T TIGR03215 71 ATSAK 75 (285)
T ss_pred CCCcH
Confidence 75544
No 498
>PRK09291 short chain dehydrogenase; Provisional
Probab=29.54 E-value=3e+02 Score=25.31 Aligned_cols=76 Identities=14% Similarity=0.014 Sum_probs=45.6
Q ss_pred CEEEEEcCCccHHHHHHHHh--CCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 232 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 232 ~~vLDIGcG~G~~~~~lA~~--~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
..+|=.|+ +|.++..+++. ..+.+++++..++......+......+ .++.++.+|+.+.. .........+|.++.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~-~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG-LALRVEKLDLTDAI-DRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcceEEEeeCCCHH-HHHHHhcCCCCEEEE
Confidence 35777787 45556555554 246899999988776655555444333 35888888887642 111101336787765
Q ss_pred e
Q 014708 310 Q 310 (420)
Q Consensus 310 ~ 310 (420)
+
T Consensus 80 ~ 80 (257)
T PRK09291 80 N 80 (257)
T ss_pred C
Confidence 4
No 499
>PRK09135 pteridine reductase; Provisional
Probab=29.12 E-value=2.7e+02 Score=25.27 Aligned_cols=61 Identities=7% Similarity=-0.080 Sum_probs=39.8
Q ss_pred CCEEEEEcCCccHHHHHHHHhC--CCCeEEEEeCCh-HHHHHHHHHhHHhCCCcEEEEEcChhhh
Q 014708 231 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNG-KLVTHCRDSLQLSGITNGYFIATNATST 292 (420)
Q Consensus 231 ~~~vLDIGcG~G~~~~~lA~~~--P~~~viGiDis~-~~i~~A~~~~~~~~l~nv~~~~~Da~~~ 292 (420)
+..+|=.|+ +|.++..++++. .+.++++++.+. .......+.+......++.++++|..+.
T Consensus 6 ~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 69 (249)
T PRK09135 6 AKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDP 69 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 467899996 577777776663 468999999763 3333333333333334688999998764
No 500
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=28.95 E-value=3.6e+02 Score=26.85 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=48.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCChHHHHHHHHHhHHhCCCcEEEEEcChhhhhhhhhccCCCeEeEEEE
Q 014708 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 309 (420)
Q Consensus 231 ~~~vLDIGcG~-G~~~~~lA~~~P~~~viGiDis~~~i~~A~~~~~~~~l~nv~~~~~Da~~~~~~~~~~~~~~~d~i~~ 309 (420)
+..|.=||+|. |......++.+ +.+|+++|.++..... .+. ...+..+. + ...|.|++
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~d~~~~~~~~-----------~~~-~~~~l~el----l----~~aDiVil 204 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGF-GATITAYDAYPNKDLD-----------FLT-YKDSVKEA----I----KDADIISL 204 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCChhHhhh-----------hhh-ccCCHHHH----H----hcCCEEEE
Confidence 45677888887 43334444443 6899999998753210 111 11233333 2 24588888
Q ss_pred eCCCCCCCCcchhhhhhHHHHHHHHHhhccCCeEEEEE
Q 014708 310 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347 (420)
Q Consensus 310 ~fpdp~~k~~~~k~Rl~~~~~l~~i~~~LkpgG~l~~~ 347 (420)
..|..- .-+. -+.+.....||+|..|+=.
T Consensus 205 ~lP~t~-----~t~~----li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 205 HVPANK-----ESYH----LFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred eCCCcH-----HHHH----HHhHHHHhcCCCCcEEEEc
Confidence 765442 1112 3445667788988866544
Done!