RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014708
(420 letters)
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 104 bits (261), Expect = 2e-25
Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 5/210 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+ AIIGG + +K + L + D LI G +++ + ALG V L+E+ +
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A ++ A++K + P D + + ++ P IP W +DIGP++ E
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
I + K V+W GP+ +++G + +++ +VIG A +
Sbjct: 306 VIRESKLVVWNGPMGVFEMDAFAHGTKA---IAEALAEALDTYSVIGGGDSAAAVEKFGL 362
Query: 185 IFGLNMVES-GSAVWEFLKGRMLPGVSALD 213
++ + + G A EF++G+ LPGV AL+
Sbjct: 363 ADKMDHISTGGGASLEFMEGKQLPGVVALE 392
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 98.2 bits (244), Expect = 3e-23
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 4/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
EKPY ++GG + +K + L + D ++ G M F + ALG V VE+ D
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
A +L++ A++K + I+ P D + + + GIP+GW +DIGP ++E
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
++ K V+W GP+ ++ G ++ + +++ +TV+G A
Sbjct: 305 QKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKFG 363
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
+ V + G A EFL+G+ LPG++++
Sbjct: 364 LEDKFSHVSTGGGASLEFLEGKELPGIASM 393
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 94.8 bits (235), Expect = 7e-22
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 13/216 (6%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
++P AI+GG + +K + L + D +I G M++ + + L ++ +
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65 AASDLIQFARDKHITILYPKDFWCTK--IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
++++ A+ K++ I P DF ++ N + GIPD W +D GP+S+E
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
I K VIW GP ++ G+ + ++ +V++ V G + +
Sbjct: 326 KDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQ-- 383
Query: 183 SSIFGLN-----MVESGSAVWEFLKGRMLPGVSALD 213
+ G A E L+G+ LPGV AL
Sbjct: 384 ---QNKKNEISHVSTGGGASLELLEGKELPGVLALS 416
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
[TaxId: 5691]}
Length = 415
Score = 93.3 bits (231), Expect = 2e-21
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 2/209 (0%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
+P AI+GG + +K L + R D L+ G M++ + A G + E+ + A
Sbjct: 205 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 264
Query: 67 SDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
L++ A D+ + ++ P D C T+ + I IP+G +DIGP+++E+ T
Sbjct: 265 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 324
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
I KCK IW GP+ YS G + + + + +++IG + A++S
Sbjct: 325 IGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEA 384
Query: 186 FGLNMVES-GSAVWEFLKGRMLPGVSALD 213
++ V + G A E L+G+ LPGV+ LD
Sbjct: 385 KRMSHVSTGGGASLELLEGKTLPGVTVLD 413
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 90.1 bits (223), Expect = 2e-20
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 5/212 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
+P+ AI+GG + +K + L + D +I G M+F + + +K +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
L++ A+ K + ++ P DF N + GIP GW+ +D GP S +
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+T+ K K ++W GP +++ G L + K S N +IG +AK
Sbjct: 322 AATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKY 380
Query: 183 SSIFGLNMV-ESGSAVWEFLKGRMLPGVSALD 213
++ V G A E L+G+ LPGV+ L
Sbjct: 381 GVTDKISHVSTGGGASLELLEGKELPGVAFLS 412
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
[TaxId: 274]}
Length = 390
Score = 86.3 bits (213), Expect = 4e-19
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 5/213 (2%)
Query: 3 KLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGA 62
K E+PYA ++GG + +K + L R D L+ G M+F + ALG V LVE+
Sbjct: 180 KDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDR 239
Query: 63 NDAASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEE 121
D A DL+ A + + P+D + + +FP+ IP + +DIGP++ E
Sbjct: 240 LDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREA 299
Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
+ + V W GP+ + G + ++ TV+G A
Sbjct: 300 FARALEGARTVFWNGPMGVFEVPPFDEGTLA---VGQAIAALEGAFTVVGGGDSVAAVNR 356
Query: 182 SSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 213
V + G A EFL+ LPG+ L+
Sbjct: 357 LGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Bacillus subtilis [TaxId: 1423]}
Length = 204
Score = 78.4 bits (192), Expect = 2e-17
Identities = 34/205 (16%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 211 ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC 270
A+ + W+ + + P+ +++G+G G F+ GMA++ D+N++G+E+ ++
Sbjct: 11 AISNPADYKGKWNTVFGND-NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69
Query: 271 RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL 330
++ S N + +A + PG++ V + +P + + R+
Sbjct: 70 VQKVKDSEAQNVKLLNIDADTLTDVF---EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHF 126
Query: 331 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 390
++ +++ G + ++D + + F EYG T +
Sbjct: 127 LKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL---------LLTYVSLDLHNSNLE 177
Query: 391 FGVRSDWEQHVIDRGAPMYRLMLSK 415
+ +++E+ G P+YR +
Sbjct: 178 GNIMTEYEEKFSALGQPIYRAEVEW 202
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 78.6 bits (193), Expect = 2e-16
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 9/214 (4%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
+L+ A + I P DF + + GIP GW +D GP+S +
Sbjct: 261 IVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 320
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
+ + + K+++W GPV ++ G L + K + C +T+IG + C A
Sbjct: 321 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGC-ITIIGGGDTATCCAKW 379
Query: 180 KVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
++ ++ G A E L+G++LPGV AL
Sbjct: 380 NTEDNVSHVST--GGGASLELLEGKVLPGVDALS 411
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 69.5 bits (169), Expect = 2e-14
Identities = 33/200 (16%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 271
+ W + + P+ V++GSG G F+ GMA++ D+N++G+++ ++++
Sbjct: 14 VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 72
Query: 272 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 331
D + G+ N + + + G++ + + +P + + R+ ++ +
Sbjct: 73 DKVLEVGVPNIKLLWVDGSDLTDYF---EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFL 129
Query: 332 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSF 391
+ +L +G++ ++D + F +YG + D +
Sbjct: 130 DTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDL---------HASDFEG 180
Query: 392 GVRSDWEQHVIDRGAPMYRL 411
V +++EQ ++G +YR+
Sbjct: 181 NVMTEYEQKFSNKGQVIYRV 200
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 35.2 bits (80), Expect = 0.011
Identities = 15/147 (10%), Positives = 37/147 (25%), Gaps = 2/147 (1%)
Query: 227 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI- 285
+DIG+G + FL EV+ + + +++ + +++ +
Sbjct: 58 DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 117
Query: 286 -ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 344
T ++ P S ++
Sbjct: 118 KVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 177
Query: 345 FLQSDIEEVMLRMKQQFLEYGKGKLVL 371
+ E + R+ L+ K
Sbjct: 178 MAEGGELEFVKRIIHDSLQLKKRLRWY 204
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 31.8 bits (71), Expect = 0.11
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 271
+ D V+DIG G G + A ++ GL+V+ +
Sbjct: 74 VAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA 125
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 29.0 bits (65), Expect = 1.0
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 190 MVESGSAVWEFL-----------KGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIG 238
M G+ V E L G LP L +P + + + H P + ++ G
Sbjct: 164 MTRMGTPVLEALGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFG 223
Query: 239 SGNG 242
SG G
Sbjct: 224 SGYG 227
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 29.0 bits (64), Expect = 1.1
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 275
VD+GSG G +L +A + G+E + +
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDR 196
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 28.2 bits (61), Expect = 1.7
Identities = 8/127 (6%), Positives = 21/127 (16%), Gaps = 1/127 (0%)
Query: 41 MSFQIMHALGLPVPP-ELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI 99
+++ + G+ P ++ K A+ K I
Sbjct: 4 LTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI 63
Query: 100 FPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK 159
+ V+ + +
Sbjct: 64 ESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSE 123
Query: 160 VSQGTCN 166
+ T
Sbjct: 124 NAVITVP 130
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 28.4 bits (62), Expect = 1.8
Identities = 10/116 (8%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 293
V+D+ G G+ + + + + ++ + K++ + + + +
Sbjct: 60 VLDVACGTGVDSIMLV--EEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117
Query: 294 RSIVASYPGKLILVSIQCPNPDFN--RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347
++ P ++ C F + R ++ ++ ++ G + +
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 28.1 bits (62), Expect = 2.2
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF 284
+D+GSG G ++ A + G E+ + +
Sbjct: 220 FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY 270
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial
membrane TIMM44 (TIM44), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 26.9 bits (59), Expect = 3.5
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 328 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 359
R+L + V+DLL G +F ++++ EV+ + +
Sbjct: 8 RALTDKVTDLL---GGLFSKTEMSEVLTEILR 36
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 26.4 bits (57), Expect = 5.7
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 234 VVDIGSGNGLFLLGMARKRKDL 255
++++GS G F + D+
Sbjct: 24 LLELGSFKGDFTSRLQEHFNDI 45
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 26.5 bits (57), Expect = 6.1
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 293
V+D+ +G G A K + + ++ ++ R ++ +G ++ +A
Sbjct: 19 VLDVATGGGHVANAFAPFVKKV--VAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76
Query: 294 RSIVASYPGKLILVSIQCPNPD 315
+ + + + PNP
Sbjct: 77 FTDERFHIVTCRIAAHHFPNPA 98
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 26.1 bits (56), Expect = 6.5
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 40 LMSFQIMHALGLPVPPELVEKGANDA 65
+ + GLP P + +A
Sbjct: 2 WATSVALAKAGLPQPKTALATDREEA 27
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 26.3 bits (57), Expect = 7.3
Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 27/146 (18%)
Query: 234 VVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 292
V++ GSG+G L +++ + EV + + + +
Sbjct: 102 VLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 161
Query: 293 FRSIVASYPGKLILVSIQCPNPDFNR-------PEHRWRMVQRSL--------------- 330
I G + + F+ P + L
Sbjct: 162 VDFIHKDISG----ATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQ 217
Query: 331 VEAVSDLLVHDGKVFLQSDIEEVMLR 356
V + D + I EV++R
Sbjct: 218 VIELLDGIRTCELALSCEKISEVIVR 243
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 26.1 bits (56), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 234 VVDIGSGNGLFLLGMARK 251
++D+GSG+G L AR
Sbjct: 37 ILDLGSGSGEMLCTWARD 54
>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 25.9 bits (56), Expect = 8.6
Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 4/147 (2%)
Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 279
I P V+ IG G+G L + + + + E++ ++ + L I
Sbjct: 68 IANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI 127
Query: 280 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 339
T + ++ +P + + S + + L
Sbjct: 128 GYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM----GPAESLFKESYYQLMKTALK 183
Query: 340 HDGKVFLQSDIEEVMLRMKQQFLEYGK 366
DG + Q + + + L + ++ ++ +
Sbjct: 184 EDGVLCCQGECQWLHLDLIKEMRQFCQ 210
>d1p2za2 b.121.2.2 (A:651-962) Adenovirus hexon {Human adenovirus
type 2 [TaxId: 10515]}
Length = 312
Score = 25.9 bits (57), Expect = 9.0
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 103 HGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSN 148
P IG +V+ IT C + +W P FSS + +
Sbjct: 205 QAYPANVPYPLIGKTAVDSITQKKFLCDRTLWRIP----FSSNFMS 246
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
11983]}
Length = 502
Score = 26.1 bits (57), Expect = 9.3
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 16/77 (20%)
Query: 32 CDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKI 91
D + ++ A +++F+ + H+ + +D +
Sbjct: 236 ADYSRWDSTQQRAVLAAA----------------LEIMVKFSSEPHLAQVVAEDLLSPSV 279
Query: 92 HHPNQVEIFPSHGIPDG 108
I + G+P G
Sbjct: 280 VDVGDFTISINEGLPSG 296
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,619,345
Number of extensions: 76131
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 36
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)