Query 014709
Match_columns 420
No_of_seqs 174 out of 480
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_D Fumarate reductase 13 k 17.9 4.6E+02 0.016 22.3 8.2 79 99-178 20-104 (119)
2 2bn8_A CEDA, cell division act 15.2 1.2E+02 0.004 24.0 3.1 55 268-322 14-71 (87)
3 1z0k_B FYVE-finger-containing 12.3 44 0.0015 26.0 -0.1 24 348-372 4-27 (69)
4 1zl8_A LIN-7; heterodimer, alp 9.2 1.6E+02 0.0055 21.7 2.0 14 16-29 39-52 (53)
5 3mud_A DNA repair protein XRCC 8.2 66 0.0023 29.2 -0.5 44 303-346 101-159 (175)
6 3v5w_G G gamma-I, guanine nucl 7.6 1.4E+02 0.0048 23.6 1.2 18 365-382 51-68 (77)
7 1nkz_B Light-harvesting protei 7.6 1.2E+02 0.0041 21.2 0.7 18 222-239 23-40 (41)
8 1lgh_B LH II, B800/850, light 7.2 1.3E+02 0.0044 21.5 0.7 17 222-238 28-44 (45)
9 2aze_C Retinoblastoma-associat 7.0 2.7E+02 0.0094 19.7 2.3 25 328-352 14-38 (46)
10 1dx7_A Light-harvesting protei 6.6 1.6E+02 0.0053 21.3 0.9 16 223-238 32-47 (48)
No 1
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=17.86 E-value=4.6e+02 Score=22.29 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=55.1
Q ss_pred hhheehhhHHHHHHHHHHHHHHhhccccCccccccc----c-hhhHHHHHHHHHHHHHHHH-HHHHHhHhhhcccCCchh
Q 014709 99 IGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCG----Y-PYMAVVLNFSQSWALYCLI-QFYTVTKDELAHIKPLAK 172 (420)
Q Consensus 99 ~gVLQYvivKPl~ailaiIle~~GvY~eg~fs~~~~----y-lyl~iI~niSv~lALY~Lv-~FY~atk~~L~p~kPl~K 172 (420)
.|=.=.+++-|++.++.=++-..|....+..+.... . .+-.++....+.+-|||=. .+|+.+|| |+=+-|..|
T Consensus 20 AGGm~sAl~~PvliLl~GillPlG~~~~~~lsY~~~~aFa~s~ig~l~ll~~i~lplWh~~HRihh~lHD-lkih~~~~~ 98 (119)
T 1kf6_D 20 AGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHD-LKIHVPAGK 98 (119)
T ss_dssp HHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTHH
T ss_pred cchHHHHHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhh-heeecCcch
Confidence 344456778888888877788899987665543221 1 2224555566777888777 89999988 777778999
Q ss_pred hhHHHH
Q 014709 173 FLTFKS 178 (420)
Q Consensus 173 Fl~IK~ 178 (420)
++|.-.
T Consensus 99 ~~~Yg~ 104 (119)
T 1kf6_D 99 WVFYGL 104 (119)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 988743
No 2
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=15.17 E-value=1.2e+02 Score=23.98 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=27.9
Q ss_pred CcCCcccccCCCCCCCCccccccccccceeEecCccEEe---eeeeeeccccccchhh
Q 014709 268 DSERPTKLRLPQPDVDIKSGMTIRESVRDVFVGGSGYIV---NDVKFTVNQAVEPVEK 322 (420)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~es~~d~~~~~g~~~v---~dv~~t~~~~~~p~e~ 322 (420)
...||..-..|+.|+-...-..=-+++|||++--|.||- -.=.|.=|+|..-.|.
T Consensus 14 qqnrpvisyvprvepapp~ha~kmd~frdvw~lrgkyvafvl~ge~frrspafsvpes 71 (87)
T 2bn8_A 14 QQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAFVLMGESFLRSPAFTVPES 71 (87)
T ss_dssp -------CCCCCCCCBTTBSCBCTTTCTTEEEETTEEEEBCCSSSCCCBCCCBSSHHH
T ss_pred hcCCcceeeccCCCCCCchHhhhcccchhheeeccceEEEEEechhhccCCccCCcHH
Confidence 344555555554433311112334789999999999863 3334555666655554
No 3
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=12.28 E-value=44 Score=25.98 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=16.0
Q ss_pred cCCCCccccCcccccccccCCCCCC
Q 014709 348 TKDDSCIASSHTRRVIRGIDDPLLN 372 (420)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (420)
++||.|-|.+. .-.++..+|||++
T Consensus 4 ~~~~gW~~~~~-~~~~~~~~dPL~E 27 (69)
T 1z0k_B 4 GSAEGWLPLSG-GQGQSEDSDPLLQ 27 (69)
T ss_dssp ---CCBCCCSS-TTCSCCCSSHHHH
T ss_pred ccCCCCCcccc-cccccccCCcHHH
Confidence 46899987654 4566788999976
No 4
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=9.21 E-value=1.6e+02 Score=21.65 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHH
Q 014709 16 SIDCEILRDCYESF 29 (420)
Q Consensus 16 aiy~d~iRdcYEAf 29 (420)
|-||..+|++||-.
T Consensus 39 SdF~~aVREVYEhv 52 (53)
T 1zl8_A 39 SEFFGAVREVYETV 52 (53)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 45899999999963
No 5
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=8.17 E-value=66 Score=29.21 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=33.1
Q ss_pred cEEeeeeeeec-----cccccchh----------hhhhhhhhhHHhhhhhhcccccccc
Q 014709 303 GYIVNDVKFTV-----NQAVEPVE----------KGITKFNEKIHKISQNIKRHDKDRR 346 (420)
Q Consensus 303 ~~~v~dv~~t~-----~~~~~p~e----------~g~~~~~~~~~~~~~~~~~~~~~~~ 346 (420)
+-.++||+|.+ ..|-.|.| +-++|+|++..++-+++.+.+.+.+
T Consensus 101 ek~lk~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k 159 (175)
T 3mud_A 101 EKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENL 159 (175)
T ss_dssp EEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568898888 88888987 5578999999998888765544433
No 6
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=7.59 E-value=1.4e+02 Score=23.61 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=12.5
Q ss_pred ccCCCCCCccccCCcccc
Q 014709 365 GIDDPLLNGSISDSAPTR 382 (420)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~ 382 (420)
.-+|||+.|--++.-..|
T Consensus 51 ~~~DpLl~Gvp~~~NPFk 68 (77)
T 3v5w_G 51 AKEDPLLTPVPASENPFR 68 (77)
T ss_dssp GGGCTTTSCCCGGGCTTT
T ss_pred CCCCCCcCCCCCCCCCCC
Confidence 358999998765555554
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=7.58 E-value=1.2e+02 Score=21.24 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=14.8
Q ss_pred HHHHHHHHhhcccccccc
Q 014709 222 MAIASIVHLYVFPAKPYE 239 (420)
Q Consensus 222 M~i~AIlh~~AFp~~pY~ 239 (420)
..++.++|.-+|-|+|+-
T Consensus 23 ~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 23 LGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 357888999999999974
No 8
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=7.22 E-value=1.3e+02 Score=21.52 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=14.2
Q ss_pred HHHHHHHHhhccccccc
Q 014709 222 MAIASIVHLYVFPAKPY 238 (420)
Q Consensus 222 M~i~AIlh~~AFp~~pY 238 (420)
..++.++|.-+|-|+|+
T Consensus 28 ~~iA~vAH~L~~~wrPW 44 (45)
T 1lgh_B 28 IILAAVAHVLVWVWKPW 44 (45)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 35788899999999986
No 9
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=7.03 E-value=2.7e+02 Score=19.70 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=18.4
Q ss_pred hhhHHhhhhhhccccccccccCCCC
Q 014709 328 NEKIHKISQNIKRHDKDRRKTKDDS 352 (420)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (420)
-++|++|+|-+..-|+..+++-|-+
T Consensus 14 ~~rFQKINqMvnss~r~~KR~~d~~ 38 (46)
T 2aze_C 14 SEKFQKINQMVCNSDRVLKRSAEGS 38 (46)
T ss_dssp HHHHHHHHHHHHCCTTCCCCCSTTC
T ss_pred hHHHHHHHHHHhhhhHhhhhhccCC
Confidence 3578889888887777666675655
No 10
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=6.62 E-value=1.6e+02 Score=21.33 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=13.8
Q ss_pred HHHHHHHhhccccccc
Q 014709 223 AIASIVHLYVFPAKPY 238 (420)
Q Consensus 223 ~i~AIlh~~AFp~~pY 238 (420)
.++.++|.-+|-|+|+
T Consensus 32 ~iA~vAH~l~w~wrPW 47 (48)
T 1dx7_A 32 AVAIVAHLAVYIWRPW 47 (48)
T ss_dssp THHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4688899999999986
Done!