BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014710
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 198/422 (46%), Gaps = 37/422 (8%)
Query: 4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
FHV G+++ S Y CV C+ CFA L KC C+ +YC CQK DW L
Sbjct: 27 FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85
Query: 63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMS 122
H+LEC + L + S T + + T ++ V +H+
Sbjct: 86 HKLECSSMVVLGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVREFESHLD 139
Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
+D EK+ L+ + IA L L++P+ S + F+++ CN TI + EL LG+
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197
Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGC 238
++P ++++NHSC PN ++ ++G LA VRAVQ + G D++ S I Y +D
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPG-----DEVFTSYIDLLYPTED--- 249
Query: 239 SGFLLRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCG 286
LRDS C++C ++K E++K++S + + +
Sbjct: 250 RNDRLRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAK 309
Query: 287 NHQEVVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343
+++ ++ E Q+K+ F +V ++ + + + + ++DW+ AL Y Q I
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369
Query: 344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 403
Y + YP + + + G+L L + K++ +A+ I+ + HG + P++ E+ +
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429
Query: 404 LE 405
+E
Sbjct: 430 IE 431
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/416 (24%), Positives = 191/416 (45%), Gaps = 32/416 (7%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
C + + S T + + T ++ V+ +H+ +D
Sbjct: 90 CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
EK+ L+ + IA L + + E N+ + F+++ CN TI + EL LG+ ++P ++
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203
Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLR 244
++NHSC PN ++ ++G LA VRAVQ + G E + S I Y +D LR
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE-----VFTSYIDLLYPTEDRNDR---LR 255
Query: 245 DSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQEVV 292
DS CQ+C ++K EI+K++ + + + +++
Sbjct: 256 DSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPS 315
Query: 293 STYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349
++ E Q+K+ F +V ++ + + + + ++DW+ AL Y Q I Y + YP
Sbjct: 316 ELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYP 375
Query: 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
+ + + G+L L K++ +A+ I+ + HG + P++ E+ ++E
Sbjct: 376 LYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/418 (24%), Positives = 192/418 (45%), Gaps = 36/418 (8%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
C + + S T + + T ++ V+ +H+ +D
Sbjct: 90 CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
EK+ L+ + IA L + L +P+ + + F+++ CN TI + EL LG+ ++P
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFL 242
++++NHSC PN ++ ++G LA VRAVQ + G E + S I Y +D
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE-----VFTSYIDLLYPTEDRNDR--- 253
Query: 243 LRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQE 290
LRDS CQ+C ++K EI+K++ + + + +++
Sbjct: 254 LRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKS 313
Query: 291 VVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 347
++ E Q+K+ F +V ++ + + + + ++DW+ AL Y Q I Y +
Sbjct: 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKH 373
Query: 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
YP + + + G+L L K++ +A+ I+ + HG + P++ E+ ++E
Sbjct: 374 YPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/418 (24%), Positives = 192/418 (45%), Gaps = 36/418 (8%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
C + + S T + + T ++ V+ +H+ +D
Sbjct: 90 CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
EK+ L+ + IA L + L +P+ + + F+++ CN TI + EL LG+ ++P
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFL 242
++++NHSC PN ++ ++G LA VRAVQ + G E + S I Y +D
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE-----VFTSYIDLLYPTEDRNDR--- 253
Query: 243 LRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQE 290
LRDS CQ+C ++K EI+K++ + + + +++
Sbjct: 254 LRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKS 313
Query: 291 VVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 347
++ E Q+K+ F +V ++ + + + + ++DW+ AL Y Q I Y +
Sbjct: 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKH 373
Query: 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
YP + + + G+L L K++ +A+ I+ + HG + P++ E+ ++E
Sbjct: 374 YPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 29 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 88
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 89 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 139
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 140 EDKKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 197
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
GLYP IS++NHSC PN +VF G ++RAV+ + G E + D+ + L
Sbjct: 198 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 257
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
C + C +D D T + +E +KKI E+ K L C Q
Sbjct: 258 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 313
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
++S+ E+L +N+ Q + + + + L +EAL Y T+ Y+ +
Sbjct: 314 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 364
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
P HP+ G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 365 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 407
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 87 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
GLYP IS++NHSC PN +VF G ++RAV+ + G E + D+ + L
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
C + C +D D T + +E +KKI E+ K L C Q
Sbjct: 256 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 311
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
++S+ E+L +N+ Q + + + + L +EAL Y T+ Y+ +
Sbjct: 312 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 362
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
P HP+ G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 363 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 405
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 87 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
GLYP IS++NHSC PN +VF G ++RAV+ + G E + D+ + L
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
C + C +D D T + +E +KKI E+ K L C Q
Sbjct: 256 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 311
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
++S+ E+L +N+ Q + + + + L +EAL Y T+ Y+ +
Sbjct: 312 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 362
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
P HP+ G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 363 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 405
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 28 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 88 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 139 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 196
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
GLYP IS++NHSC PN +VF G ++RAV+ + G E + D+ + L
Sbjct: 197 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 256
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
C + C +D D T + +E +KKI E+ K L C Q
Sbjct: 257 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 312
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
++S+ E+L +N+ Q + + + + L +EAL Y T+ Y+ +
Sbjct: 313 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
P HP+ G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 63 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 122
Query: 67 CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 123 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 173
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
E +QL++ Q + + Q P ++ E F+K+ CN+ TICN+E++ +G
Sbjct: 174 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 231
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
GLYP IS++NHSC PN +VF G ++RAV+ + G E + D+ + L
Sbjct: 232 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 291
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
C + C +D D T + +E +KKI E+ K L C Q
Sbjct: 292 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 347
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
++S+ E+L +N+ Q + + + + L +EAL Y T+ Y+ +
Sbjct: 348 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 398
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
P HP+ G+Q GKL+ G A+K++ A +I+R+THG
Sbjct: 399 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 441
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 172/404 (42%), Gaps = 45/404 (11%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 28 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLXRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXX-QNDNVIPSTTTDNYSLVEALVAHMSDID 125
C+ L KS P + + PS + YS + L ++++ +
Sbjct: 88 CKCL--------KSCKPRYPPDSVRLLGRVVFKLXDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 EKQLLLYAQIANLVNLILQWPEISINEIA---------ENFSKLACNAHTICNSELRPLG 176
E + + LV + I + + E F+K+ CN+ TICN+E + +G
Sbjct: 139 EDR---KEGLRQLVXTFQHFXREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEXQEVG 195
Query: 177 TGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAE---GQFDDIQES----AILE 229
GLYP IS++NHSC PN +VF G ++RAV+ + G E D + S L
Sbjct: 196 VGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLR 255
Query: 230 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQ 289
C + C +D D T + +E +KKI E+ K L C Q
Sbjct: 256 DQYCFECDCFRCQTQDKDADXLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAXC---Q 311
Query: 290 EVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRV 347
++S+ E+L +N+ Q + + + L +EAL Y T Y+
Sbjct: 312 AIISSNS--ERLP-------DINIYQLKVLDCAXDACINLGLLEEALFYGTRTXEPYRIF 362
Query: 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
+P HP+ G+Q GKL+ G A K++ A +I R+THG
Sbjct: 363 FPGSHPVRGVQVXKVGKLQLHQGXFPQAXKNLRLAFDIXRVTHG 406
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/426 (21%), Positives = 178/426 (41%), Gaps = 49/426 (11%)
Query: 7 SGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRL 65
+ +VI ++ Y V +S C CF L +C C+ YC CQK W H+
Sbjct: 29 AADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKN 88
Query: 66 ECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
EC + + K +++ + + + S ++ V H + +
Sbjct: 89 ECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDD-----LQNHVEHFGEEE 143
Query: 126 EKQLLLYAQIANLVNLILQWP----EISINEIAENFSKLACNAHTICNSE-LRPLGTGLY 180
+K+L + ++ + WP + S+ I+ F + CN T+ + L+ +G G++
Sbjct: 144 QKELRV-----DVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIF 198
Query: 181 PVISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAE----GQFDDIQESAI-------L 228
P + ++NH C PN ++F G V+++ H E G+ + +E + L
Sbjct: 199 PNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHL 258
Query: 229 EGYRCKDDGCSGFLLRDSDDKGFTCQQC--GL-----VRSKEEIK---KIASEVNILSKK 278
R + L+ +C+ C GL + +KE+ K ++ E+ SK
Sbjct: 259 SEERRRQ-------LKKQYYFDCSCEHCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKD 311
Query: 279 TL----ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEAL 334
TL S G + EVV + + Q+ ++ ++ +++ ++L L+ ++EA
Sbjct: 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEAS 371
Query: 335 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 394
Y + + Y ++Y + LG+ G W G E + +A IL +THG +
Sbjct: 372 HYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431
Query: 395 PFMKEL 400
P K+L
Sbjct: 432 PITKDL 437
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEK 77
RC C A ++ K+CS CQ WYC CQ W+ H C + ++ D+ K
Sbjct: 17 RCAYCSAEAS-KRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQGDRAK 64
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 39 LKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
+ +C+ C V YC + CQ+ DWK H+ C
Sbjct: 20 MSECTGCHKVNYCSTFCQRKDWKDHQHIC 48
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And
Bs69 Mynd Domains
Length = 47
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 39 LKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
+ +C+ C V YC + CQ+ DWK H+ C
Sbjct: 15 MSECTGCHKVNYCSTFCQRKDWKDHQHIC 43
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 184 SIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAE-------GQFDDIQESAILEGYRCKD 235
+ INH C PN V GR A V+A++ + G E G F + E E Y C+
Sbjct: 207 AFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNE--FCECYTCER 264
Query: 236 DGCSGFLLR 244
G F R
Sbjct: 265 RGTGAFKSR 273
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain
(Leu384-Cys430) Of Human Zinc Finger Mynd Domain
Containing Protein 10
Length = 60
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71
RC C A ++ K+CS CQ WYC CQ W+ H C S
Sbjct: 17 RCAYCSAEAS-KRCSRCQNEWYCCRECQVKHWEKHGKTCSGPS 58
>pdb|2OD1|A Chain A, Solution Structure Of The Mynd Domain From Human
Aml1-Eto
Length = 60
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 16 PYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
P PN+ SS S C C ++ + CS C YCGS CQ DW+ H C
Sbjct: 3 PNSGSPNSDSSES-CWNCGRKAS-ETCSGCNTARYCGSFCQHKDWEKHHHIC 52
>pdb|2DJ8|A Chain A, Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2ti
(Protein Mtg8)
Length = 60
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 42 CSACQVVWYCGSNCQKLDWKLHRLECQVLS 71
CS C YCGS CQ DW+ H C S
Sbjct: 29 CSGCNTARYCGSFCQHKDWEKHHHICSGPS 58
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 42 CSACQVVWYCGSNCQKLDWKLHRLEC 67
CS C YCGS CQ DW+ H C
Sbjct: 31 CSGCNTARYCGSFCQHKDWEKHHHIC 56
>pdb|3VMN|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
pdb|3VMO|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With Isomaltotriose
pdb|3VMP|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With 4,5-Epoxypentyl Alpha-D-Glucopyranoside
Length = 643
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 131 LYAQIANLVNLILQWPEISINEI-AENFSKLACNAHTICNSELRPLGT---GLYPVISII 186
+YA+ N + L +++N++ EN SKLA + + +EL P GT G P S
Sbjct: 315 VYAEFLNKMKEKLPQYYLTLNDVNGENISKLANSKQDVIYNELWPFGTSALGNRPQESYG 374
Query: 187 NHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDD 221
+ + V G+ +V A PK FDD
Sbjct: 375 DLKARVDQVRQATGKSLIVGAYMEEPK-----FDD 404
>pdb|2JCV|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCV|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JD1|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD1|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD2|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|2JD2|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|3RAS|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|3RAS|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|2Y1C|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1C|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1D|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1D|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1E|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1E|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1F|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1F|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1G|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|2Y1G|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|4A03|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4A03|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4AIC|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
pdb|4AIC|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
Length = 398
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 139 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCL 191
++L L WP A AC+ HT + E PL T ++P + + + +
Sbjct: 280 ISLALGWPRRVSGAAA------ACDFHTASSWEFEPLDTDVFPAVELARQAGV 326
>pdb|2C82|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2C82|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
Length = 413
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 139 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCL 191
++L L WP A AC+ HT + E PL T ++P + + + +
Sbjct: 271 ISLALGWPRRVSGAAA------ACDFHTASSWEFEPLDTDVFPAVELARQAGV 317
>pdb|2JCX|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCX|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCY|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JCY|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JD0|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
pdb|2JD0|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
Length = 398
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 139 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCL 191
++L L WP A AC+ HT + E PL T ++P + + + +
Sbjct: 280 ISLALGWPRRVSGAAA------ACDFHTASSWEFEPLDTDVFPAVELARQAGV 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,524,113
Number of Sequences: 62578
Number of extensions: 440606
Number of successful extensions: 995
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 35
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)