Query 014710
Match_columns 420
No_of_seqs 204 out of 2825
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:46:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2084 Predicted histone tail 99.8 2.9E-18 6.2E-23 173.9 23.5 391 2-415 31-475 (482)
2 KOG1840 Kinesin light chain [C 99.5 6.1E-13 1.3E-17 131.9 17.3 134 278-411 247-380 (508)
3 KOG1840 Kinesin light chain [C 99.5 7.4E-13 1.6E-17 131.3 17.6 130 278-407 205-334 (508)
4 PF13424 TPR_12: Tetratricopep 99.3 3.1E-11 6.8E-16 90.3 9.2 78 310-388 1-78 (78)
5 PF00856 SET: SET domain; Int 99.2 1.6E-11 3.5E-16 104.8 3.2 51 170-220 106-160 (162)
6 PF01753 zf-MYND: MYND finger; 99.0 1.3E-10 2.8E-15 73.1 0.8 37 30-67 1-37 (37)
7 smart00317 SET SET (Su(var)3-9 98.9 7.3E-10 1.6E-14 89.4 3.4 46 176-221 67-116 (116)
8 CHL00033 ycf3 photosystem I as 98.7 2.1E-07 4.5E-12 80.5 13.4 124 273-402 36-159 (168)
9 TIGR02795 tol_pal_ybgF tol-pal 98.6 6.5E-07 1.4E-11 72.1 12.1 115 273-402 3-117 (119)
10 KOG2589 Histone tail methylase 98.5 3E-08 6.4E-13 91.3 0.9 77 161-239 175-254 (453)
11 PF13424 TPR_12: Tetratricopep 98.4 1.4E-06 3.1E-11 64.8 8.9 72 274-346 7-78 (78)
12 PF13374 TPR_10: Tetratricopep 98.4 3.2E-07 6.9E-12 59.3 4.5 42 355-396 1-42 (42)
13 KOG0553 TPR repeat-containing 98.4 4.9E-06 1.1E-10 75.9 13.1 118 272-410 81-198 (304)
14 PRK15359 type III secretion sy 98.4 1.1E-05 2.4E-10 67.8 14.0 114 274-408 26-139 (144)
15 PRK10803 tol-pal system protei 98.4 7.8E-06 1.7E-10 75.6 13.7 107 283-404 154-260 (263)
16 KOG1839 Uncharacterized protei 98.3 2E-06 4.3E-11 92.0 9.9 126 283-409 943-1068(1236)
17 PRK02603 photosystem I assembl 98.3 1.1E-05 2.4E-10 70.0 12.1 129 273-407 36-164 (172)
18 PRK15363 pathogenicity island 98.3 4.3E-05 9.4E-10 64.0 14.8 121 270-411 33-153 (157)
19 PRK10866 outer membrane biogen 98.2 7.2E-05 1.6E-09 68.6 15.9 127 273-411 33-174 (243)
20 PLN03088 SGT1, suppressor of 98.2 3.1E-05 6.8E-10 75.2 14.2 109 275-404 5-113 (356)
21 PF13525 YfiO: Outer membrane 98.2 0.00015 3.2E-09 64.7 17.2 131 272-412 5-141 (203)
22 TIGR02552 LcrH_SycD type III s 98.1 8.8E-05 1.9E-09 61.2 14.0 112 273-405 18-129 (135)
23 PF13374 TPR_10: Tetratricopep 98.1 3.9E-06 8.4E-11 54.1 4.5 42 313-354 1-42 (42)
24 PF13512 TPR_18: Tetratricopep 98.1 5.3E-05 1.2E-09 62.3 11.3 89 273-371 11-99 (142)
25 KOG4626 O-linked N-acetylgluco 98.1 2.8E-05 6.1E-10 77.1 10.7 93 277-385 325-417 (966)
26 TIGR03302 OM_YfiO outer membra 98.1 7.3E-05 1.6E-09 68.2 13.0 117 273-404 34-158 (235)
27 PF12895 Apc3: Anaphase-promot 98.1 6.7E-05 1.5E-09 56.6 10.5 83 285-382 2-84 (84)
28 PF09986 DUF2225: Uncharacteri 98.1 0.00012 2.7E-09 65.5 13.8 137 250-388 48-197 (214)
29 KOG4442 Clathrin coat binding 98.0 3.7E-06 8.1E-11 84.1 4.0 70 177-247 187-264 (729)
30 KOG4626 O-linked N-acetylgluco 98.0 3.2E-05 7E-10 76.8 9.5 97 272-384 354-450 (966)
31 COG1729 Uncharacterized protei 98.0 5.9E-05 1.3E-09 68.5 10.2 100 275-384 144-243 (262)
32 PF13414 TPR_11: TPR repeat; P 97.9 9.2E-05 2E-09 53.4 8.4 64 314-385 3-67 (69)
33 PF09976 TPR_21: Tetratricopep 97.9 0.00023 4.9E-09 59.8 11.9 94 276-383 52-145 (145)
34 PF14938 SNAP: Soluble NSF att 97.8 0.00051 1.1E-08 64.6 14.0 127 279-412 42-169 (282)
35 KOG1710 MYND Zn-finger and ank 97.8 5.6E-06 1.2E-10 74.4 0.5 44 27-70 319-362 (396)
36 KOG1080 Histone H3 (Lys4) meth 97.7 1.9E-05 4.1E-10 84.2 3.6 41 182-222 939-983 (1005)
37 COG3063 PilF Tfp pilus assembl 97.7 0.00037 8E-09 61.5 10.6 95 274-384 37-131 (250)
38 PF12688 TPR_5: Tetratrico pep 97.7 0.00098 2.1E-08 53.8 12.3 100 275-384 4-103 (120)
39 COG4105 ComL DNA uptake lipopr 97.7 0.002 4.3E-08 58.2 15.1 127 273-411 35-166 (254)
40 TIGR02521 type_IV_pilW type IV 97.7 0.0011 2.5E-08 59.1 13.7 88 280-383 39-126 (234)
41 PF13432 TPR_16: Tetratricopep 97.7 0.0002 4.4E-09 51.0 6.9 59 319-385 2-60 (65)
42 PF09976 TPR_21: Tetratricopep 97.6 0.0057 1.2E-07 51.3 16.2 100 272-381 11-110 (145)
43 KOG1839 Uncharacterized protei 97.6 0.00029 6.2E-09 75.9 9.9 127 283-409 984-1110(1236)
44 cd00189 TPR Tetratricopeptide 97.6 0.00047 1E-08 51.5 8.6 92 278-385 6-97 (100)
45 TIGR02521 type_IV_pilW type IV 97.6 0.0019 4.2E-08 57.6 14.1 93 279-385 106-198 (234)
46 PF14938 SNAP: Soluble NSF att 97.5 0.0011 2.4E-08 62.3 12.0 106 277-386 79-185 (282)
47 TIGR03302 OM_YfiO outer membra 97.5 0.003 6.4E-08 57.5 14.4 119 276-409 74-214 (235)
48 PRK11189 lipoprotein NlpI; Pro 97.5 0.0011 2.4E-08 62.8 11.9 95 275-385 67-161 (296)
49 PF13371 TPR_9: Tetratricopept 97.5 0.00053 1.1E-08 49.9 7.1 72 320-404 1-72 (73)
50 CHL00033 ycf3 photosystem I as 97.5 0.0015 3.3E-08 56.3 11.1 68 313-385 34-101 (168)
51 TIGR00990 3a0801s09 mitochondr 97.4 0.0019 4.1E-08 67.8 13.1 93 276-384 369-461 (615)
52 PF03704 BTAD: Bacterial trans 97.4 0.0086 1.9E-07 50.1 14.7 113 275-395 9-135 (146)
53 PRK10370 formate-dependent nit 97.4 0.0051 1.1E-07 54.6 13.7 111 277-408 78-191 (198)
54 PRK10803 tol-pal system protei 97.4 0.0067 1.4E-07 56.2 14.9 82 319-410 148-229 (263)
55 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0014 3.1E-08 52.3 9.4 85 315-409 3-87 (119)
56 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00087 1.9E-08 65.4 8.7 73 308-385 69-141 (453)
57 TIGR00990 3a0801s09 mitochondr 97.3 0.0028 6E-08 66.6 13.1 91 279-385 338-428 (615)
58 PRK15179 Vi polysaccharide bio 97.3 0.003 6.4E-08 66.5 13.1 96 273-384 87-182 (694)
59 PRK09782 bacteriophage N4 rece 97.3 0.0034 7.4E-08 68.7 13.7 106 281-407 618-723 (987)
60 KOG4234 TPR repeat-containing 97.3 0.0061 1.3E-07 52.8 12.1 111 264-385 87-197 (271)
61 COG2940 Proteins containing SE 97.3 0.00019 4.1E-09 72.7 3.5 61 182-242 405-479 (480)
62 PRK11788 tetratricopeptide rep 97.3 0.004 8.7E-08 61.2 12.6 93 279-384 42-135 (389)
63 PRK02603 photosystem I assembl 97.2 0.0045 9.8E-08 53.5 11.2 72 309-385 30-101 (172)
64 KOG0543 FKBP-type peptidyl-pro 97.2 0.014 2.9E-07 56.1 14.6 105 273-385 209-320 (397)
65 PRK11788 tetratricopeptide rep 97.1 0.013 2.8E-07 57.6 14.6 92 281-385 150-243 (389)
66 KOG1173 Anaphase-promoting com 97.1 0.003 6.5E-08 62.5 9.6 106 283-402 425-530 (611)
67 PF14559 TPR_19: Tetratricopep 97.0 0.0016 3.4E-08 46.6 5.5 65 325-402 2-66 (68)
68 PRK15174 Vi polysaccharide exp 97.0 0.012 2.5E-07 62.2 14.2 117 274-409 286-402 (656)
69 PRK15331 chaperone protein Sic 97.0 0.035 7.6E-07 47.0 13.7 99 270-384 35-133 (165)
70 COG3063 PilF Tfp pilus assembl 97.0 0.0031 6.8E-08 55.8 7.6 96 278-387 75-170 (250)
71 KOG1082 Histone H3 (Lys9) meth 97.0 0.00058 1.3E-08 66.5 3.4 40 184-223 274-321 (364)
72 KOG1130 Predicted G-alpha GTPa 96.9 0.011 2.4E-07 56.6 11.2 100 284-387 207-306 (639)
73 KOG1125 TPR repeat-containing 96.9 0.0013 2.9E-08 65.1 5.4 96 283-394 441-536 (579)
74 PF13824 zf-Mss51: Zinc-finger 96.9 0.001 2.2E-08 44.8 3.1 47 29-75 1-50 (55)
75 TIGR02917 PEP_TPR_lipo putativ 96.9 0.014 3.1E-07 63.2 13.7 103 275-385 25-154 (899)
76 PRK15179 Vi polysaccharide bio 96.9 0.021 4.6E-07 60.1 14.2 99 273-387 121-219 (694)
77 PRK04841 transcriptional regul 96.9 0.024 5.2E-07 62.4 15.4 105 282-388 501-605 (903)
78 PRK15174 Vi polysaccharide exp 96.8 0.017 3.8E-07 60.9 13.5 92 278-385 252-347 (656)
79 PF13432 TPR_16: Tetratricopep 96.8 0.0058 1.3E-07 43.2 7.0 58 278-343 3-60 (65)
80 PF13414 TPR_11: TPR repeat; P 96.8 0.0085 1.8E-07 42.9 7.4 62 274-343 5-67 (69)
81 PRK12370 invasion protein regu 96.8 0.0066 1.4E-07 62.8 9.4 84 286-385 318-401 (553)
82 PRK09782 bacteriophage N4 rece 96.7 0.018 3.8E-07 63.2 12.3 93 285-399 589-681 (987)
83 cd05804 StaR_like StaR_like; a 96.7 0.0098 2.1E-07 57.6 9.4 91 281-383 123-213 (355)
84 PRK12370 invasion protein regu 96.6 0.024 5.3E-07 58.7 12.7 90 279-384 345-434 (553)
85 COG2956 Predicted N-acetylgluc 96.6 0.088 1.9E-06 49.1 14.5 127 273-411 108-262 (389)
86 PF12688 TPR_5: Tetratrico pep 96.6 0.035 7.5E-07 44.8 10.6 64 316-384 3-66 (120)
87 PRK11447 cellulose synthase su 96.5 0.021 4.6E-07 64.4 12.2 98 275-385 306-414 (1157)
88 PF12968 DUF3856: Domain of Un 96.5 0.26 5.6E-06 39.2 14.1 115 277-392 14-136 (144)
89 KOG1083 Putative transcription 96.4 0.0018 3.9E-08 68.1 2.2 42 183-224 1251-1296(1306)
90 PF13176 TPR_7: Tetratricopept 96.4 0.0077 1.7E-07 37.2 4.3 31 358-388 1-31 (36)
91 KOG1130 Predicted G-alpha GTPa 96.3 0.12 2.7E-06 49.7 13.6 104 285-392 248-351 (639)
92 KOG2076 RNA polymerase III tra 96.3 0.058 1.3E-06 56.5 12.3 99 270-384 137-235 (895)
93 KOG2376 Signal recognition par 96.2 0.13 2.9E-06 51.6 14.1 124 279-413 86-232 (652)
94 TIGR02552 LcrH_SycD type III s 96.2 0.034 7.5E-07 45.5 9.0 64 314-385 17-80 (135)
95 PF07719 TPR_2: Tetratricopept 96.2 0.011 2.3E-07 35.7 4.4 31 356-386 1-31 (34)
96 PRK10049 pgaA outer membrane p 96.2 0.063 1.4E-06 57.9 13.2 101 275-397 52-152 (765)
97 PF00515 TPR_1: Tetratricopept 96.2 0.011 2.4E-07 35.8 4.4 31 356-386 1-31 (34)
98 PRK04841 transcriptional regul 96.2 0.085 1.9E-06 58.0 14.3 109 278-389 537-645 (903)
99 TIGR02917 PEP_TPR_lipo putativ 96.2 0.068 1.5E-06 57.9 13.3 61 315-384 771-831 (899)
100 PRK15359 type III secretion sy 96.1 0.019 4.2E-07 48.0 6.7 67 319-398 29-95 (144)
101 cd00189 TPR Tetratricopeptide 96.0 0.074 1.6E-06 39.1 9.3 62 316-385 2-63 (100)
102 PRK14574 hmsH outer membrane p 96.0 0.049 1.1E-06 58.6 10.9 87 281-383 43-129 (822)
103 PRK11447 cellulose synthase su 96.0 0.038 8.3E-07 62.4 10.6 90 279-384 610-699 (1157)
104 TIGR00540 hemY_coli hemY prote 96.0 0.063 1.4E-06 53.3 11.0 88 286-388 313-402 (409)
105 PF08631 SPO22: Meiosis protei 95.9 0.11 2.5E-06 48.6 11.9 113 283-398 4-124 (278)
106 PF12862 Apc5: Anaphase-promot 95.9 0.11 2.3E-06 40.0 9.7 82 324-407 8-90 (94)
107 PRK10370 formate-dependent nit 95.9 0.095 2.1E-06 46.4 10.5 95 286-401 53-150 (198)
108 PF14559 TPR_19: Tetratricopep 95.9 0.022 4.8E-07 40.5 5.3 53 283-343 2-54 (68)
109 KOG0547 Translocase of outer m 95.9 0.05 1.1E-06 53.4 9.0 102 279-389 469-570 (606)
110 PRK10049 pgaA outer membrane p 95.9 0.12 2.7E-06 55.7 13.3 97 282-386 320-423 (765)
111 PF13429 TPR_15: Tetratricopep 95.8 0.04 8.8E-07 51.6 8.5 101 277-398 151-251 (280)
112 PF13181 TPR_8: Tetratricopept 95.8 0.021 4.6E-07 34.4 4.4 32 356-387 1-32 (34)
113 PF13525 YfiO: Outer membrane 95.8 0.13 2.8E-06 45.7 11.2 83 315-407 6-88 (203)
114 COG1729 Uncharacterized protei 95.8 0.059 1.3E-06 49.2 8.8 89 317-415 144-232 (262)
115 KOG1126 DNA-binding cell divis 95.8 0.0078 1.7E-07 60.7 3.4 67 310-384 485-551 (638)
116 PRK15363 pathogenicity island 95.8 0.061 1.3E-06 45.3 8.2 77 308-397 28-105 (157)
117 KOG1173 Anaphase-promoting com 95.7 0.047 1E-06 54.4 8.6 92 287-387 395-486 (611)
118 PRK10866 outer membrane biogen 95.7 0.1 2.2E-06 47.8 10.5 84 314-407 32-115 (243)
119 PRK11189 lipoprotein NlpI; Pro 95.7 0.071 1.5E-06 50.5 9.6 67 311-385 61-127 (296)
120 KOG0550 Molecular chaperone (D 95.7 0.17 3.7E-06 48.7 11.6 104 272-388 249-353 (486)
121 COG4783 Putative Zn-dependent 95.6 0.087 1.9E-06 51.7 9.8 94 274-383 308-401 (484)
122 KOG1141 Predicted histone meth 95.6 0.0029 6.3E-08 64.8 -0.2 58 183-240 1190-1259(1262)
123 PF13176 TPR_7: Tetratricopept 95.5 0.034 7.4E-07 34.2 4.5 31 316-346 1-31 (36)
124 COG5010 TadD Flp pilus assembl 95.5 0.075 1.6E-06 48.1 8.4 86 283-384 111-196 (257)
125 PF10579 Rapsyn_N: Rapsyn N-te 95.5 0.31 6.8E-06 35.7 9.9 68 276-348 10-77 (80)
126 KOG1155 Anaphase-promoting com 95.5 0.077 1.7E-06 51.8 8.8 95 307-413 428-522 (559)
127 KOG2376 Signal recognition par 95.4 0.25 5.3E-06 49.7 12.1 104 280-383 118-251 (652)
128 KOG2003 TPR repeat-containing 95.4 0.14 3.1E-06 49.7 10.1 95 283-398 501-595 (840)
129 COG2976 Uncharacterized protei 95.4 0.51 1.1E-05 41.0 12.5 96 276-386 93-189 (207)
130 KOG4642 Chaperone-dependent E3 95.3 0.18 3.9E-06 45.1 9.9 95 279-389 17-111 (284)
131 PF13429 TPR_15: Tetratricopep 95.3 0.077 1.7E-06 49.7 8.2 93 279-387 187-279 (280)
132 KOG2002 TPR-containing nuclear 95.2 0.11 2.4E-06 54.9 9.6 97 278-386 276-372 (1018)
133 PLN03158 methionine aminopepti 95.2 0.012 2.6E-07 57.7 2.4 39 26-65 8-53 (396)
134 KOG0548 Molecular co-chaperone 95.2 0.11 2.4E-06 51.5 8.9 107 278-408 8-114 (539)
135 COG2956 Predicted N-acetylgluc 95.1 0.14 3.1E-06 47.8 9.0 93 279-386 187-279 (389)
136 KOG0548 Molecular co-chaperone 95.1 0.26 5.6E-06 49.0 11.3 92 278-385 364-455 (539)
137 KOG2076 RNA polymerase III tra 95.0 0.15 3.3E-06 53.5 9.8 94 273-381 415-508 (895)
138 cd05804 StaR_like StaR_like; a 94.9 0.2 4.2E-06 48.5 10.1 75 306-388 106-180 (355)
139 KOG0547 Translocase of outer m 94.9 0.25 5.4E-06 48.7 10.3 123 271-410 114-237 (606)
140 KOG0545 Aryl-hydrocarbon recep 94.7 1.7 3.7E-05 39.2 14.2 106 272-385 178-293 (329)
141 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.15 3.3E-06 50.1 8.4 63 276-343 79-141 (453)
142 KOG1941 Acetylcholine receptor 94.7 0.29 6.4E-06 46.4 9.9 106 285-395 135-244 (518)
143 KOG1126 DNA-binding cell divis 94.7 0.057 1.2E-06 54.7 5.6 85 285-385 434-518 (638)
144 KOG1085 Predicted methyltransf 94.5 0.03 6.5E-07 50.8 3.0 42 183-224 334-379 (392)
145 PF08631 SPO22: Meiosis protei 94.5 0.22 4.8E-06 46.6 9.1 78 325-402 4-84 (278)
146 KOG1155 Anaphase-promoting com 94.5 0.87 1.9E-05 44.7 12.9 112 283-411 443-554 (559)
147 PRK10747 putative protoheme IX 94.5 0.4 8.7E-06 47.4 11.3 96 281-384 162-291 (398)
148 KOG1585 Protein required for f 94.5 1.6 3.5E-05 39.4 13.7 104 280-389 39-143 (308)
149 PRK10747 putative protoheme IX 94.5 0.28 6.1E-06 48.5 10.2 85 286-387 308-392 (398)
150 PF10602 RPN7: 26S proteasome 94.4 0.51 1.1E-05 40.9 10.5 104 276-386 40-143 (177)
151 PF10516 SHNi-TPR: SHNi-TPR; 94.3 0.11 2.4E-06 32.5 4.4 37 357-393 2-38 (38)
152 TIGR00540 hemY_coli hemY prote 94.2 2.1 4.6E-05 42.4 15.8 91 278-383 90-180 (409)
153 KOG4555 TPR repeat-containing 94.1 1.9 4.1E-05 35.1 12.1 95 279-385 50-144 (175)
154 PF09295 ChAPs: ChAPs (Chs5p-A 93.9 0.37 8E-06 47.3 9.3 80 285-380 213-292 (395)
155 KOG2002 TPR-containing nuclear 93.9 1.4 3E-05 47.1 13.8 123 275-410 455-579 (1018)
156 PLN03081 pentatricopeptide (PP 93.8 0.59 1.3E-05 50.0 11.7 90 316-413 496-603 (697)
157 KOG0624 dsRNA-activated protei 93.8 2.1 4.6E-05 40.6 13.5 118 269-407 152-269 (504)
158 PLN03088 SGT1, suppressor of 93.8 0.29 6.3E-06 47.6 8.4 59 319-385 7-65 (356)
159 COG5010 TadD Flp pilus assembl 93.7 0.52 1.1E-05 42.8 9.2 98 307-415 96-195 (257)
160 PF03704 BTAD: Bacterial trans 93.7 1.1 2.3E-05 37.3 10.9 80 273-360 63-143 (146)
161 PF13371 TPR_9: Tetratricopept 93.7 0.32 7E-06 34.9 6.7 54 282-343 5-58 (73)
162 PRK10153 DNA-binding transcrip 93.7 0.3 6.6E-06 49.9 8.7 68 314-395 420-487 (517)
163 KOG4648 Uncharacterized conser 93.7 0.91 2E-05 42.9 10.9 94 275-384 100-193 (536)
164 PF10516 SHNi-TPR: SHNi-TPR; 93.6 0.25 5.3E-06 30.9 4.9 37 315-351 2-38 (38)
165 PF12895 Apc3: Anaphase-promot 93.5 0.073 1.6E-06 39.8 3.0 49 327-381 2-50 (84)
166 PF00244 14-3-3: 14-3-3 protei 93.4 4.4 9.6E-05 36.9 14.9 80 330-409 142-223 (236)
167 PF00515 TPR_1: Tetratricopept 93.3 0.23 5E-06 29.7 4.5 29 315-343 2-30 (34)
168 PF12862 Apc5: Anaphase-promot 93.1 1.5 3.3E-05 33.5 9.9 81 283-365 9-90 (94)
169 PF13428 TPR_14: Tetratricopep 93.1 0.18 3.9E-06 32.5 4.0 36 358-398 3-38 (44)
170 KOG2857 Predicted MYND Zn-fing 93.0 0.038 8.3E-07 44.5 0.8 39 27-70 5-45 (157)
171 KOG1128 Uncharacterized conser 93.0 0.77 1.7E-05 47.5 10.0 86 283-384 496-581 (777)
172 KOG0553 TPR repeat-containing 92.8 0.26 5.7E-06 45.6 6.0 60 277-344 120-179 (304)
173 smart00101 14_3_3 14-3-3 homol 92.8 4.8 0.0001 36.8 14.1 60 330-389 144-204 (244)
174 PF10300 DUF3808: Protein of u 92.7 3.2 7E-05 42.0 14.3 122 277-409 272-400 (468)
175 PF13174 TPR_6: Tetratricopept 92.6 0.2 4.3E-06 29.6 3.5 28 358-385 2-29 (33)
176 PF13428 TPR_14: Tetratricopep 92.6 0.3 6.5E-06 31.4 4.5 29 315-343 2-30 (44)
177 PF07719 TPR_2: Tetratricopept 92.4 0.36 7.8E-06 28.7 4.5 30 315-344 2-31 (34)
178 PF04781 DUF627: Protein of un 92.2 3.2 6.8E-05 32.7 10.5 101 278-384 2-106 (111)
179 KOG1174 Anaphase-promoting com 92.2 1.2 2.7E-05 43.1 9.7 87 309-412 433-519 (564)
180 KOG0624 dsRNA-activated protei 92.2 2.3 5.1E-05 40.3 11.3 110 277-407 43-152 (504)
181 KOG3081 Vesicle coat complex C 92.2 3.7 8E-05 37.6 12.2 64 340-404 192-268 (299)
182 KOG1585 Protein required for f 92.1 1.7 3.6E-05 39.3 9.8 104 276-383 114-217 (308)
183 PF13181 TPR_8: Tetratricopept 92.0 0.41 8.9E-06 28.5 4.4 30 315-344 2-31 (34)
184 COG3071 HemY Uncharacterized e 91.9 1.5 3.3E-05 42.2 10.0 69 306-386 323-391 (400)
185 PRK15331 chaperone protein Sic 91.7 1.2 2.7E-05 37.7 8.3 79 306-392 29-107 (165)
186 PF06552 TOM20_plant: Plant sp 91.6 7.8 0.00017 33.5 13.0 73 332-405 46-124 (186)
187 KOG1941 Acetylcholine receptor 91.4 2.1 4.6E-05 40.9 10.2 78 314-394 206-283 (518)
188 PF04438 zf-HIT: HIT zinc fing 91.4 0.072 1.6E-06 31.3 0.4 28 28-57 3-30 (30)
189 PRK14574 hmsH outer membrane p 91.4 3.4 7.5E-05 44.8 13.3 98 279-384 374-478 (822)
190 PF04733 Coatomer_E: Coatomer 91.3 4.5 9.8E-05 38.1 12.7 100 287-407 182-282 (290)
191 KOG1129 TPR repeat-containing 91.2 0.34 7.5E-06 45.4 4.9 27 360-386 362-388 (478)
192 PF13512 TPR_18: Tetratricopep 91.1 2.2 4.8E-05 35.3 9.0 78 317-404 13-90 (142)
193 PLN03077 Protein ECB2; Provisi 91.0 3.8 8.3E-05 44.9 13.7 128 280-413 597-766 (857)
194 KOG2003 TPR repeat-containing 90.8 0.52 1.1E-05 46.0 5.8 116 263-384 140-265 (840)
195 COG3118 Thioredoxin domain-con 90.6 14 0.00031 34.4 14.6 125 274-407 136-302 (304)
196 smart00028 TPR Tetratricopepti 90.6 0.42 9E-06 27.0 3.4 29 357-385 2-30 (34)
197 KOG4555 TPR repeat-containing 90.5 0.83 1.8E-05 37.1 5.8 58 321-386 50-107 (175)
198 COG4235 Cytochrome c biogenesi 89.7 5.5 0.00012 37.1 11.3 115 279-413 163-280 (287)
199 KOG1125 TPR repeat-containing 89.6 0.69 1.5E-05 46.5 5.7 62 316-385 432-493 (579)
200 TIGR03504 FimV_Cterm FimV C-te 89.5 0.83 1.8E-05 29.5 4.2 25 360-384 3-27 (44)
201 KOG0508 Ankyrin repeat protein 89.4 1.1 2.3E-05 44.2 6.6 76 337-412 318-393 (615)
202 PLN03218 maturation of RBCL 1; 89.4 4.1 9E-05 45.5 12.1 54 281-341 516-569 (1060)
203 PLN03218 maturation of RBCL 1; 89.3 5.4 0.00012 44.6 13.0 25 316-340 616-640 (1060)
204 KOG1337 N-methyltransferase [G 88.8 0.57 1.2E-05 47.5 4.7 83 149-231 198-290 (472)
205 KOG1129 TPR repeat-containing 88.7 2.5 5.4E-05 39.9 8.2 58 319-384 261-318 (478)
206 PF14561 TPR_20: Tetratricopep 88.7 1.6 3.4E-05 33.2 6.0 55 352-407 18-88 (90)
207 KOG1586 Protein required for f 88.6 9.7 0.00021 34.4 11.5 99 279-383 80-181 (288)
208 KOG1156 N-terminal acetyltrans 88.6 2.9 6.2E-05 42.9 9.2 96 274-385 9-104 (700)
209 KOG1174 Anaphase-promoting com 88.5 7.1 0.00015 38.1 11.3 123 283-415 345-495 (564)
210 COG4783 Putative Zn-dependent 88.4 3 6.6E-05 41.3 9.0 107 282-408 350-473 (484)
211 PRK14720 transcript cleavage f 88.2 5 0.00011 43.6 11.4 101 282-397 41-152 (906)
212 PF12569 NARP1: NMDA receptor- 88.2 1.8 3.8E-05 44.3 7.7 64 313-384 193-256 (517)
213 cd02681 MIT_calpain7_1 MIT: do 87.9 4.9 0.00011 29.4 7.8 53 355-407 5-60 (76)
214 PRK14720 transcript cleavage f 87.9 3.2 6.9E-05 45.1 9.6 64 316-388 118-181 (906)
215 PF13174 TPR_6: Tetratricopept 87.6 1 2.3E-05 26.3 3.6 28 316-343 2-29 (33)
216 PF13431 TPR_17: Tetratricopep 87.5 0.38 8.3E-06 29.1 1.6 25 352-376 9-33 (34)
217 PF07721 TPR_4: Tetratricopept 87.4 0.81 1.8E-05 25.7 2.8 25 357-381 2-26 (26)
218 PF04184 ST7: ST7 protein; In 87.1 7.8 0.00017 38.8 11.0 90 287-386 183-289 (539)
219 KOG3785 Uncharacterized conser 87.1 4.9 0.00011 38.3 9.2 103 280-406 30-132 (557)
220 PF10602 RPN7: 26S proteasome 87.0 6.2 0.00013 34.2 9.5 72 312-388 34-105 (177)
221 KOG0495 HAT repeat protein [RN 86.9 6.6 0.00014 40.6 10.6 64 315-387 619-682 (913)
222 PF04733 Coatomer_E: Coatomer 86.8 4.3 9.4E-05 38.2 9.0 88 283-384 142-229 (290)
223 COG3947 Response regulator con 86.5 4.7 0.0001 37.5 8.6 74 314-395 279-352 (361)
224 PF04184 ST7: ST7 protein; In 86.5 5.1 0.00011 40.0 9.4 89 287-381 215-320 (539)
225 KOG3617 WD40 and TPR repeat-co 86.3 3.9 8.4E-05 43.3 8.7 74 283-382 811-884 (1416)
226 PF04910 Tcf25: Transcriptiona 86.1 28 0.00061 33.9 14.5 84 260-343 24-132 (360)
227 PF09295 ChAPs: ChAPs (Chs5p-A 86.1 3.9 8.5E-05 40.2 8.6 83 285-386 182-264 (395)
228 PF09986 DUF2225: Uncharacteri 86.1 5.6 0.00012 35.6 8.9 69 326-395 89-157 (214)
229 COG4700 Uncharacterized protei 85.9 8.7 0.00019 33.5 9.3 96 276-385 93-189 (251)
230 KOG2041 WD40 repeat protein [G 85.5 17 0.00038 37.9 12.7 96 285-403 747-861 (1189)
231 PF12968 DUF3856: Domain of Un 85.5 13 0.00028 29.8 9.4 85 314-399 7-97 (144)
232 PF09889 DUF2116: Uncharacteri 85.2 0.72 1.6E-05 31.8 2.1 31 27-64 3-33 (59)
233 PF14853 Fis1_TPR_C: Fis1 C-te 85.0 5.2 0.00011 27.0 6.2 44 358-406 3-46 (53)
234 PF14561 TPR_20: Tetratricopep 84.9 6.3 0.00014 29.9 7.5 57 310-366 18-89 (90)
235 PLN03077 Protein ECB2; Provisi 84.9 5 0.00011 44.1 9.7 87 282-381 564-650 (857)
236 KOG1079 Transcriptional repres 84.9 0.67 1.5E-05 47.3 2.6 39 183-221 666-708 (739)
237 KOG1338 Uncharacterized conser 84.8 3.9 8.5E-05 39.4 7.5 74 147-220 173-257 (466)
238 KOG3060 Uncharacterized conser 84.6 22 0.00047 32.6 11.6 91 284-387 132-222 (289)
239 KOG4162 Predicted calmodulin-b 84.2 11 0.00024 39.6 10.8 88 290-392 462-549 (799)
240 cd02679 MIT_spastin MIT: domai 84.0 9.4 0.0002 28.2 7.7 61 354-414 6-75 (79)
241 PF13431 TPR_17: Tetratricopep 83.8 1.4 3E-05 26.6 2.8 26 310-335 9-34 (34)
242 PLN03081 pentatricopeptide (PP 83.8 10 0.00022 40.5 11.3 58 316-383 464-521 (697)
243 PRK11906 transcriptional regul 83.4 7.1 0.00015 38.8 8.9 68 306-384 333-400 (458)
244 PF07754 DUF1610: Domain of un 82.8 1.1 2.4E-05 24.7 1.8 24 235-258 1-24 (24)
245 PF00244 14-3-3: 14-3-3 protei 82.7 5.7 0.00012 36.2 7.6 58 289-346 143-201 (236)
246 PRK00418 DNA gyrase inhibitor; 82.7 0.77 1.7E-05 31.9 1.4 11 49-59 26-36 (62)
247 cd02682 MIT_AAA_Arch MIT: doma 82.5 11 0.00024 27.5 7.4 57 355-411 5-63 (75)
248 KOG4162 Predicted calmodulin-b 82.5 7.2 0.00016 40.9 8.8 88 283-386 695-784 (799)
249 PF11817 Foie-gras_1: Foie gra 82.0 23 0.0005 32.4 11.4 66 314-381 178-243 (247)
250 COG4700 Uncharacterized protei 81.9 5.8 0.00013 34.5 6.7 68 312-386 87-154 (251)
251 PF10013 DUF2256: Uncharacteri 81.7 0.75 1.6E-05 29.1 1.0 11 48-58 31-41 (42)
252 KOG1497 COP9 signalosome, subu 81.6 46 0.001 31.5 12.8 75 311-389 100-177 (399)
253 KOG1586 Protein required for f 81.4 38 0.00081 30.7 11.7 98 287-389 49-147 (288)
254 PF05053 Menin: Menin; InterP 81.4 14 0.00031 37.5 10.2 61 331-394 296-357 (618)
255 PF09670 Cas_Cas02710: CRISPR- 81.3 48 0.001 32.6 14.0 112 277-394 136-283 (379)
256 PRK01343 zinc-binding protein; 81.3 1.1 2.4E-05 30.5 1.8 13 47-59 23-35 (57)
257 PF10255 Paf67: RNA polymerase 81.3 7.3 0.00016 38.3 8.1 73 318-390 126-198 (404)
258 KOG1308 Hsp70-interacting prot 80.5 1.1 2.3E-05 42.5 2.0 96 273-384 115-210 (377)
259 KOG0508 Ankyrin repeat protein 80.5 0.84 1.8E-05 44.8 1.4 71 298-368 321-391 (615)
260 cd02683 MIT_1 MIT: domain cont 80.4 12 0.00026 27.5 7.2 56 355-410 5-62 (77)
261 COG2909 MalT ATP-dependent tra 80.3 53 0.0011 35.4 14.3 105 278-389 421-530 (894)
262 KOG4317 Predicted Zn-finger pr 80.2 0.76 1.6E-05 42.4 0.9 40 24-68 4-43 (383)
263 PF09311 Rab5-bind: Rabaptin-l 80.2 4.7 0.0001 35.1 5.9 51 347-397 131-181 (181)
264 KOG0376 Serine-threonine phosp 80.1 2.1 4.5E-05 42.4 3.9 93 276-384 8-100 (476)
265 KOG3060 Uncharacterized conser 80.0 16 0.00035 33.4 9.1 83 285-383 99-181 (289)
266 KOG4563 Cell cycle-regulated h 79.8 5.7 0.00012 38.0 6.5 58 318-375 45-102 (400)
267 KOG3612 PHD Zn-finger protein 79.8 0.74 1.6E-05 45.8 0.8 43 26-71 526-568 (588)
268 cd02684 MIT_2 MIT: domain cont 79.5 20 0.00044 26.1 8.1 57 354-410 4-62 (75)
269 PLN02789 farnesyltranstransfer 79.2 46 0.00099 31.8 12.8 93 285-385 50-171 (320)
270 PF07721 TPR_4: Tetratricopept 79.1 3.2 6.8E-05 23.2 3.0 23 316-338 3-25 (26)
271 PF10345 Cohesin_load: Cohesin 78.6 73 0.0016 33.5 15.2 99 284-387 72-170 (608)
272 PF03884 DUF329: Domain of unk 78.6 0.91 2E-05 31.1 0.7 11 49-59 22-32 (57)
273 KOG3785 Uncharacterized conser 78.4 15 0.00033 35.2 8.8 65 282-363 67-131 (557)
274 KOG1081 Transcription factor N 78.4 0.97 2.1E-05 45.4 1.2 52 174-225 362-418 (463)
275 PF04212 MIT: MIT (microtubule 78.2 13 0.00029 26.3 6.8 55 355-409 4-60 (69)
276 smart00028 TPR Tetratricopepti 78.0 4.8 0.0001 22.2 3.8 28 316-343 3-30 (34)
277 PRK10153 DNA-binding transcrip 77.5 25 0.00055 36.1 11.1 31 356-386 420-450 (517)
278 KOG0495 HAT repeat protein [RN 77.4 13 0.00028 38.6 8.5 49 283-339 662-710 (913)
279 PF01535 PPR: PPR repeat; Int 77.4 3.5 7.6E-05 23.5 3.0 27 316-342 2-28 (31)
280 COG4105 ComL DNA uptake lipopr 77.2 59 0.0013 29.8 14.3 121 275-407 74-213 (254)
281 PF12569 NARP1: NMDA receptor- 76.5 64 0.0014 33.2 13.5 108 279-408 201-310 (517)
282 COG3024 Uncharacterized protei 76.4 1.3 2.9E-05 30.7 1.0 11 49-59 27-37 (65)
283 KOG3617 WD40 and TPR repeat-co 76.4 17 0.00037 38.8 9.2 80 308-387 852-943 (1416)
284 smart00745 MIT Microtubule Int 76.3 22 0.00048 25.7 7.7 58 354-411 6-65 (77)
285 KOG0550 Molecular chaperone (D 75.7 36 0.00077 33.5 10.6 78 275-362 290-367 (486)
286 TIGR01010 BexC_CtrB_KpsE polys 75.6 72 0.0016 31.0 13.4 81 326-413 178-260 (362)
287 PF09311 Rab5-bind: Rabaptin-l 75.3 9 0.00019 33.3 6.2 48 308-355 134-181 (181)
288 COG2976 Uncharacterized protei 74.9 59 0.0013 28.6 11.4 69 307-381 83-151 (207)
289 smart00101 14_3_3 14-3-3 homol 74.5 14 0.0003 33.8 7.4 56 289-344 145-201 (244)
290 KOG1156 N-terminal acetyltrans 74.4 61 0.0013 33.7 12.3 102 285-404 88-189 (700)
291 TIGR03504 FimV_Cterm FimV C-te 74.3 4 8.6E-05 26.4 2.8 25 317-341 2-26 (44)
292 KOG3362 Predicted BBOX Zn-fing 74.1 1.4 3.1E-05 35.8 0.8 32 25-58 116-147 (156)
293 KOG1127 TPR repeat-containing 73.6 21 0.00045 38.9 9.2 101 273-389 3-107 (1238)
294 PLN03144 Carbon catabolite rep 73.6 1.8 4E-05 44.8 1.7 27 39-65 74-107 (606)
295 PF12855 Ecl1: Life-span regul 73.5 1.5 3.3E-05 28.1 0.7 31 27-61 6-36 (43)
296 KOG4340 Uncharacterized conser 73.4 15 0.00033 34.3 7.3 63 314-384 144-206 (459)
297 PRK10941 hypothetical protein; 72.9 39 0.00084 31.4 10.1 85 313-410 180-264 (269)
298 PLN02789 farnesyltranstransfer 72.8 45 0.00097 31.9 10.8 46 316-369 144-189 (320)
299 PF08189 Meleagrin: Meleagrin/ 72.8 0.9 2E-05 27.4 -0.4 19 45-63 6-25 (39)
300 PF02259 FAT: FAT domain; Int 72.4 56 0.0012 31.1 11.8 113 273-389 147-291 (352)
301 COG0457 NrfG FOG: TPR repeat [ 71.6 36 0.00079 28.7 9.5 95 282-388 140-234 (291)
302 cd02678 MIT_VPS4 MIT: domain c 71.4 34 0.00073 24.8 7.6 55 355-409 5-61 (75)
303 PF11817 Foie-gras_1: Foie gra 71.1 41 0.0009 30.7 9.9 58 352-411 174-231 (247)
304 COG5159 RPN6 26S proteasome re 71.0 64 0.0014 30.2 10.6 23 279-301 10-32 (421)
305 PF14853 Fis1_TPR_C: Fis1 C-te 70.9 11 0.00023 25.5 4.4 28 316-343 3-30 (53)
306 KOG2300 Uncharacterized conser 70.6 70 0.0015 32.2 11.4 67 326-396 457-523 (629)
307 PF15015 NYD-SP12_N: Spermatog 70.5 79 0.0017 31.2 11.6 126 272-406 176-311 (569)
308 COG3629 DnrI DNA-binding trans 70.1 47 0.001 31.0 9.8 78 314-399 153-230 (280)
309 TIGR00756 PPR pentatricopeptid 70.0 7.8 0.00017 22.4 3.4 26 316-341 2-27 (35)
310 COG3947 Response regulator con 69.9 43 0.00093 31.4 9.3 72 272-351 279-350 (361)
311 KOG4340 Uncharacterized conser 69.7 35 0.00076 32.0 8.7 65 307-379 37-101 (459)
312 cd02677 MIT_SNX15 MIT: domain 69.6 41 0.00088 24.5 7.8 56 354-409 4-61 (75)
313 KOG1127 TPR repeat-containing 69.2 58 0.0013 35.7 11.3 106 277-391 601-706 (1238)
314 PF12854 PPR_1: PPR repeat 69.0 8 0.00017 23.2 3.2 26 315-340 8-33 (34)
315 PRK11906 transcriptional regul 68.1 37 0.0008 33.9 9.2 91 289-397 275-374 (458)
316 KOG1463 26S proteasome regulat 67.9 1.1E+02 0.0024 29.4 11.6 100 287-390 103-202 (411)
317 PF04810 zf-Sec23_Sec24: Sec23 67.5 3.2 6.9E-05 26.2 1.2 26 234-259 4-33 (40)
318 PF13041 PPR_2: PPR repeat fam 67.2 10 0.00023 24.7 3.8 27 315-341 4-30 (50)
319 PF10373 EST1_DNA_bind: Est1 D 67.1 8.7 0.00019 35.5 4.7 44 333-384 1-44 (278)
320 KOG0543 FKBP-type peptidyl-pro 66.5 85 0.0018 30.7 11.0 98 272-385 257-355 (397)
321 KOG2796 Uncharacterized conser 65.8 65 0.0014 29.8 9.4 60 320-387 258-317 (366)
322 KOG1070 rRNA processing protei 65.7 60 0.0013 36.9 10.8 66 315-388 1531-1596(1710)
323 PRK00398 rpoP DNA-directed RNA 65.7 4.5 9.8E-05 26.3 1.7 27 235-261 6-32 (46)
324 KOG2047 mRNA splicing factor [ 65.5 44 0.00095 34.8 9.2 96 285-387 182-279 (835)
325 cd02656 MIT MIT: domain contai 65.3 49 0.0011 23.8 7.5 55 356-410 6-62 (75)
326 KOG0276 Vesicle coat complex C 64.8 61 0.0013 33.5 10.0 87 317-406 669-774 (794)
327 PF10952 DUF2753: Protein of u 64.6 75 0.0016 25.7 9.9 73 278-350 7-86 (140)
328 COG3071 HemY Uncharacterized e 64.4 26 0.00056 34.1 7.1 68 317-384 266-356 (400)
329 COG4235 Cytochrome c biogenesi 64.3 30 0.00065 32.3 7.4 67 310-384 152-221 (287)
330 KOG3783 Uncharacterized conser 64.1 25 0.00054 35.6 7.2 65 320-385 455-520 (546)
331 PF13812 PPR_3: Pentatricopept 64.1 14 0.00031 21.3 3.7 28 315-342 2-29 (34)
332 PF10579 Rapsyn_N: Rapsyn N-te 64.0 38 0.00083 25.0 6.3 59 326-389 18-76 (80)
333 KOG4234 TPR repeat-containing 61.6 32 0.00069 30.4 6.5 59 277-343 139-197 (271)
334 KOG2300 Uncharacterized conser 61.5 1.1E+02 0.0023 31.0 10.7 95 283-381 456-552 (629)
335 PF09297 zf-NADH-PPase: NADH p 61.0 4.9 0.00011 23.8 1.1 25 235-259 6-30 (32)
336 cd02680 MIT_calpain7_2 MIT: do 60.3 64 0.0014 23.5 7.4 35 355-389 5-39 (75)
337 KOG1128 Uncharacterized conser 59.8 16 0.00034 38.3 5.0 58 327-397 498-555 (777)
338 PF13453 zf-TFIIB: Transcripti 59.2 7.2 0.00016 24.6 1.7 37 234-270 1-40 (41)
339 PF04910 Tcf25: Transcriptiona 59.2 72 0.0016 31.1 9.4 41 309-349 35-75 (360)
340 KOG2471 TPR repeat-containing 59.1 1.4E+02 0.003 30.3 11.0 36 353-388 616-651 (696)
341 PF02259 FAT: FAT domain; Int 58.6 60 0.0013 30.9 9.0 92 293-388 123-217 (352)
342 KOG2796 Uncharacterized conser 58.4 1.6E+02 0.0034 27.4 12.0 65 317-383 215-279 (366)
343 PF10300 DUF3808: Protein of u 58.4 52 0.0011 33.3 8.6 62 319-384 272-333 (468)
344 COG2178 Predicted RNA-binding 58.3 1.3E+02 0.0028 26.4 17.6 142 263-414 20-181 (204)
345 cd02681 MIT_calpain7_1 MIT: do 58.3 70 0.0015 23.4 8.3 33 272-304 6-38 (76)
346 KOG4648 Uncharacterized conser 58.2 32 0.0007 32.9 6.4 46 319-365 102-147 (536)
347 KOG4814 Uncharacterized conser 58.1 1.1E+02 0.0024 32.0 10.5 104 275-388 357-460 (872)
348 PF09613 HrpB1_HrpK: Bacterial 57.4 1.2E+02 0.0026 25.7 9.5 58 275-340 13-70 (160)
349 COG3629 DnrI DNA-binding trans 56.9 1.2E+02 0.0026 28.4 10.0 82 272-361 153-235 (280)
350 PF04053 Coatomer_WDAD: Coatom 56.5 24 0.00053 35.4 5.8 77 316-392 349-443 (443)
351 COG2909 MalT ATP-dependent tra 56.3 3E+02 0.0065 30.0 15.6 106 283-396 469-575 (894)
352 PRK11519 tyrosine kinase; Prov 55.8 2.7E+02 0.0059 30.0 13.9 33 380-412 324-356 (719)
353 KOG2738 Putative methionine am 55.4 6 0.00013 36.7 1.2 34 31-65 12-50 (369)
354 KOG3364 Membrane protein invol 55.2 1.2E+02 0.0026 25.1 9.1 86 313-407 31-117 (149)
355 COG0457 NrfG FOG: TPR repeat [ 55.1 1.2E+02 0.0027 25.2 10.1 61 323-388 139-199 (291)
356 KOG2709 Uncharacterized conser 54.9 31 0.00067 33.7 5.8 59 356-414 22-91 (560)
357 KOG2908 26S proteasome regulat 54.7 2E+02 0.0044 27.6 11.4 96 292-394 58-153 (380)
358 KOG2471 TPR repeat-containing 54.4 34 0.00073 34.4 6.1 105 283-388 251-367 (696)
359 KOG2610 Uncharacterized conser 54.4 1.2E+02 0.0027 29.1 9.5 59 323-388 146-207 (491)
360 COG4649 Uncharacterized protei 54.2 44 0.00095 28.9 6.0 72 282-362 142-213 (221)
361 KOG1464 COP9 signalosome, subu 54.0 1E+02 0.0022 28.7 8.6 83 314-399 145-231 (440)
362 KOG2561 Adaptor protein NUB1, 53.5 78 0.0017 31.4 8.3 40 349-388 257-299 (568)
363 KOG3081 Vesicle coat complex C 53.5 1.9E+02 0.0041 26.9 13.2 85 311-407 204-288 (299)
364 cd02679 MIT_spastin MIT: domai 53.3 89 0.0019 23.0 6.9 59 273-342 9-67 (79)
365 PRK00420 hypothetical protein; 53.1 55 0.0012 25.9 6.1 29 232-261 23-51 (112)
366 TIGR02710 CRISPR-associated pr 53.0 2.3E+02 0.0051 27.8 13.3 107 279-388 137-278 (380)
367 smart00661 RPOL9 RNA polymeras 52.1 11 0.00024 24.9 1.9 25 235-259 3-29 (52)
368 KOG2581 26S proteasome regulat 51.6 1.9E+02 0.0042 28.5 10.5 73 306-384 201-275 (493)
369 PF13281 DUF4071: Domain of un 51.3 2.2E+02 0.0047 28.0 11.1 103 298-411 125-230 (374)
370 PF10255 Paf67: RNA polymerase 51.3 87 0.0019 31.0 8.5 66 283-348 133-198 (404)
371 KOG4507 Uncharacterized conser 51.2 1.3E+02 0.0027 31.3 9.5 75 318-405 646-720 (886)
372 PF06552 TOM20_plant: Plant sp 50.6 1.3E+02 0.0027 26.2 8.3 56 290-346 46-105 (186)
373 smart00154 ZnF_AN1 AN1-like Zi 50.5 10 0.00022 23.7 1.3 23 30-53 1-25 (39)
374 PF11207 DUF2989: Protein of u 50.2 1.8E+02 0.004 25.7 10.9 64 307-375 134-197 (203)
375 PRK05978 hypothetical protein; 49.6 8.8 0.00019 32.0 1.2 37 226-262 27-64 (148)
376 PF10345 Cohesin_load: Cohesin 49.3 2.1E+02 0.0045 30.1 11.7 78 308-388 53-131 (608)
377 PF05843 Suf: Suppressor of fo 48.8 1.1E+02 0.0023 28.6 8.5 82 288-385 17-99 (280)
378 PF10867 DUF2664: Protein of u 48.5 38 0.00082 25.6 4.3 19 381-399 8-26 (89)
379 KOG4563 Cell cycle-regulated h 48.5 82 0.0018 30.5 7.5 63 270-332 39-101 (400)
380 KOG2047 mRNA splicing factor [ 48.2 2.4E+02 0.0052 29.7 11.1 98 285-388 360-457 (835)
381 cd03572 ENTH_epsin_related ENT 48.0 1.3E+02 0.0027 24.3 7.6 61 349-409 12-86 (122)
382 TIGR03007 pepcterm_ChnLen poly 47.0 3.3E+02 0.0071 27.7 14.1 38 376-413 256-293 (498)
383 PF14803 Nudix_N_2: Nudix N-te 46.7 5.1 0.00011 24.3 -0.4 22 29-50 2-33 (34)
384 cd02678 MIT_VPS4 MIT: domain c 46.2 1.1E+02 0.0024 22.0 7.6 46 271-316 5-51 (75)
385 PF07720 TPR_3: Tetratricopept 45.9 66 0.0014 19.6 4.4 23 358-380 3-25 (36)
386 KOG2053 Mitochondrial inherita 45.6 1.5E+02 0.0032 32.2 9.5 19 322-340 85-103 (932)
387 COG1997 RPL43A Ribosomal prote 45.1 14 0.0003 27.6 1.5 27 234-260 37-63 (89)
388 PRK09841 cryptic autophosphory 44.5 4.4E+02 0.0095 28.5 13.6 33 381-413 325-357 (726)
389 PF04423 Rad50_zn_hook: Rad50 44.3 35 0.00076 22.9 3.3 26 252-277 22-47 (54)
390 PRK06266 transcription initiat 44.0 16 0.00036 31.6 2.1 30 230-261 117-147 (178)
391 PF07282 OrfB_Zn_ribbon: Putat 43.0 24 0.00051 25.0 2.5 27 235-261 31-57 (69)
392 PF09538 FYDLN_acid: Protein o 42.9 18 0.00038 28.5 1.9 23 26-48 8-35 (108)
393 PF13281 DUF4071: Domain of un 42.3 99 0.0021 30.3 7.3 91 285-386 154-256 (374)
394 PF12760 Zn_Tnp_IS1595: Transp 42.2 12 0.00027 24.2 0.8 39 218-258 6-45 (46)
395 COG2075 RPL24A Ribosomal prote 41.7 10 0.00022 26.6 0.4 31 27-57 3-38 (66)
396 PF10571 UPF0547: Uncharacteri 41.2 24 0.00052 19.9 1.8 20 29-48 2-23 (26)
397 PRK15180 Vi polysaccharide bio 40.9 4.1E+02 0.0088 27.0 11.7 103 286-405 712-821 (831)
398 COG1084 Predicted GTPase [Gene 40.8 2E+02 0.0042 27.6 8.7 89 305-393 74-165 (346)
399 COG4976 Predicted methyltransf 40.3 36 0.00079 30.7 3.6 55 323-385 4-58 (287)
400 PF09577 Spore_YpjB: Sporulati 40.3 2.9E+02 0.0062 25.1 14.9 93 270-362 3-103 (232)
401 cd09247 BRO1_Alix_like_2 Prote 40.1 1.9E+02 0.0041 28.0 9.0 40 351-390 248-287 (346)
402 PF14949 ARF7EP_C: ARF7 effect 40.1 19 0.00042 28.0 1.7 26 39-65 74-100 (103)
403 KOG0551 Hsp90 co-chaperone CNS 40.0 3.5E+02 0.0076 26.1 12.4 91 278-381 87-178 (390)
404 TIGR00373 conserved hypothetic 39.1 14 0.00029 31.4 0.8 30 230-261 109-139 (158)
405 COG1656 Uncharacterized conser 38.9 30 0.00065 29.3 2.7 36 235-270 100-151 (165)
406 COG1996 RPC10 DNA-directed RNA 38.5 16 0.00035 24.2 0.9 25 235-259 9-33 (49)
407 KOG1464 COP9 signalosome, subu 38.2 3.4E+02 0.0073 25.4 11.3 105 287-395 42-184 (440)
408 PF02150 RNA_POL_M_15KD: RNA p 38.0 11 0.00024 22.9 0.1 25 235-259 4-29 (35)
409 PRK00432 30S ribosomal protein 37.6 24 0.00051 23.5 1.6 24 234-259 22-46 (50)
410 COG5349 Uncharacterized protei 37.5 16 0.00035 29.0 0.9 30 227-261 16-51 (126)
411 KOG2422 Uncharacterized conser 37.5 2.2E+02 0.0047 29.5 8.8 72 272-343 284-371 (665)
412 cd09240 BRO1_Alix Protein-inte 37.4 3.6E+02 0.0079 26.0 10.5 66 350-415 249-316 (346)
413 COG5159 RPN6 26S proteasome re 37.4 3.6E+02 0.0078 25.4 10.9 102 285-390 98-199 (421)
414 COG1198 PriA Primosomal protei 37.3 73 0.0016 34.1 5.9 52 235-286 447-514 (730)
415 KOG2061 Uncharacterized MYND Z 37.2 14 0.00031 35.3 0.7 47 27-74 136-183 (362)
416 KOG0686 COP9 signalosome, subu 37.1 1.2E+02 0.0027 29.8 6.9 58 279-341 157-214 (466)
417 PF10952 DUF2753: Protein of u 37.1 2.3E+02 0.0049 23.0 8.3 77 318-395 5-88 (140)
418 PF06957 COPI_C: Coatomer (COP 36.8 4.4E+02 0.0096 26.3 12.8 129 275-408 207-347 (422)
419 KOG1920 IkappaB kinase complex 36.6 1.3E+02 0.0028 33.7 7.7 71 327-397 921-999 (1265)
420 PF08792 A2L_zn_ribbon: A2L zi 36.5 21 0.00046 21.4 1.1 25 235-259 6-30 (33)
421 KOG3616 Selective LIM binding 36.3 5.8E+02 0.013 27.5 13.3 57 325-381 848-907 (1636)
422 PF12753 Nro1: Nuclear pore co 35.9 86 0.0019 30.7 5.7 65 330-404 334-403 (404)
423 PRK11827 hypothetical protein; 35.8 28 0.00061 24.2 1.8 25 235-259 11-35 (60)
424 COG4068 Uncharacterized protei 35.6 20 0.00044 24.4 1.0 25 27-58 8-32 (64)
425 KOG1915 Cell cycle control pro 35.5 4.3E+02 0.0092 26.9 10.3 66 323-389 75-140 (677)
426 PRK14891 50S ribosomal protein 35.2 18 0.00039 29.1 0.8 32 27-58 4-40 (131)
427 KOG2610 Uncharacterized conser 35.2 3.9E+02 0.0085 25.8 9.6 62 316-381 211-272 (491)
428 TIGR03362 VI_chp_7 type VI sec 34.9 3.2E+02 0.007 25.9 9.3 80 277-361 218-298 (301)
429 COG1571 Predicted DNA-binding 34.9 23 0.0005 34.9 1.7 27 235-262 353-379 (421)
430 PF08969 USP8_dimer: USP8 dime 34.6 1.3E+02 0.0027 23.8 5.7 40 265-304 31-70 (115)
431 COG3898 Uncharacterized membra 34.0 4.2E+02 0.009 26.3 9.8 91 280-389 128-221 (531)
432 TIGR03017 EpsF chain length de 34.0 4.8E+02 0.01 25.9 14.9 34 379-412 266-299 (444)
433 PF07975 C1_4: TFIIH C1-like d 33.7 20 0.00043 24.0 0.8 26 29-56 1-36 (51)
434 PF08666 SAF: SAF domain; Int 33.7 31 0.00066 23.6 1.8 18 204-221 3-20 (63)
435 PF05053 Menin: Menin; InterP 33.6 2.1E+02 0.0046 29.5 8.1 75 289-366 296-371 (618)
436 COG1516 FliS Flagellin-specifi 33.5 2.7E+02 0.0058 22.8 10.7 91 261-351 19-124 (132)
437 cd09034 BRO1_Alix_like Protein 33.0 3.4E+02 0.0075 25.9 9.6 41 350-390 245-285 (345)
438 PRK05685 fliS flagellar protei 32.9 2.7E+02 0.0058 22.6 10.4 89 261-349 23-126 (132)
439 cd02683 MIT_1 MIT: domain cont 32.8 2E+02 0.0043 21.0 7.2 45 273-317 7-52 (77)
440 cd02682 MIT_AAA_Arch MIT: doma 32.6 2E+02 0.0043 21.0 8.2 36 271-306 5-40 (75)
441 COG3118 Thioredoxin domain-con 32.5 1.7E+02 0.0036 27.6 6.7 58 309-366 231-303 (304)
442 smart00671 SEL1 Sel1-like repe 32.5 83 0.0018 18.2 3.5 27 358-384 3-33 (36)
443 COG1794 RacX Aspartate racemas 31.7 75 0.0016 28.6 4.2 65 329-394 11-78 (230)
444 PRK14562 haloacid dehalogenase 31.6 3.7E+02 0.008 23.8 14.4 143 264-414 22-182 (204)
445 PF04048 Sec8_exocyst: Sec8 ex 31.5 3E+02 0.0064 22.7 11.1 85 292-383 46-130 (142)
446 PF01927 Mut7-C: Mut7-C RNAse 31.2 25 0.00054 29.4 1.1 34 235-268 94-143 (147)
447 COG5290 IkappaB kinase complex 31.0 3.7E+02 0.008 29.1 9.5 50 350-400 936-985 (1243)
448 PF03604 DNA_RNApol_7kD: DNA d 30.9 37 0.00081 20.2 1.5 24 235-259 3-26 (32)
449 KOG2807 RNA polymerase II tran 30.7 24 0.00051 33.3 1.0 42 15-58 317-362 (378)
450 PF07295 DUF1451: Protein of u 30.6 24 0.00051 29.5 0.9 25 26-50 111-141 (146)
451 PF05843 Suf: Suppressor of fo 30.2 3.9E+02 0.0085 24.8 9.2 91 285-388 49-139 (280)
452 smart00659 RPOLCX RNA polymera 30.1 39 0.00084 21.8 1.6 25 235-260 5-29 (44)
453 PRK14559 putative protein seri 29.8 40 0.00087 35.6 2.6 33 25-58 13-50 (645)
454 COG5574 PEX10 RING-finger-cont 29.8 37 0.00079 31.1 2.0 44 26-71 214-258 (271)
455 KOG4814 Uncharacterized conser 29.7 6.7E+02 0.015 26.6 10.9 57 354-411 807-863 (872)
456 PF12947 EGF_3: EGF domain; I 29.5 34 0.00073 20.9 1.2 16 186-201 4-19 (36)
457 cd00350 rubredoxin_like Rubred 29.4 40 0.00086 20.1 1.5 13 247-259 14-26 (33)
458 PRK13184 pknD serine/threonine 29.4 6E+02 0.013 28.4 11.4 68 337-413 535-604 (932)
459 KOG2858 Uncharacterized conser 29.3 23 0.0005 33.7 0.7 33 25-58 15-47 (390)
460 PF08311 Mad3_BUB1_I: Mad3/BUB 29.0 3.1E+02 0.0066 22.1 7.9 85 287-383 41-126 (126)
461 cd02656 MIT MIT: domain contai 28.8 2.2E+02 0.0047 20.3 7.8 34 273-306 7-40 (75)
462 COG2888 Predicted Zn-ribbon RN 28.7 38 0.00083 23.3 1.5 33 27-59 9-48 (61)
463 PF13717 zinc_ribbon_4: zinc-r 28.7 31 0.00067 21.1 1.0 23 28-50 3-36 (36)
464 COG1998 RPS31 Ribosomal protei 28.5 38 0.00082 22.4 1.3 24 235-259 22-46 (51)
465 KOG2880 SMAD6 interacting prot 28.5 1.4E+02 0.0031 28.7 5.6 54 353-407 32-85 (424)
466 COG1379 PHP family phosphoeste 28.4 27 0.00059 32.9 1.0 29 233-261 247-276 (403)
467 TIGR02300 FYDLN_acid conserved 28.4 43 0.00093 27.0 2.0 23 26-48 8-35 (129)
468 COG1096 Predicted RNA-binding 28.2 32 0.00069 29.8 1.3 25 233-259 150-174 (188)
469 KOG0006 E3 ubiquitin-protein l 28.0 21 0.00046 33.3 0.2 26 39-69 335-361 (446)
470 PF11207 DUF2989: Protein of u 28.0 2E+02 0.0044 25.4 6.2 51 282-336 150-200 (203)
471 PF08271 TF_Zn_Ribbon: TFIIB z 28.0 28 0.00062 22.1 0.8 27 235-261 3-30 (43)
472 KOG3616 Selective LIM binding 27.8 2.4E+02 0.0052 30.2 7.5 51 347-397 763-825 (1636)
473 PF04570 DUF581: Protein of un 27.8 26 0.00057 24.1 0.6 35 26-60 15-51 (58)
474 PF13240 zinc_ribbon_2: zinc-r 27.5 36 0.00077 18.5 1.0 19 29-47 1-21 (23)
475 PF08772 NOB1_Zn_bind: Nin one 26.7 31 0.00066 25.0 0.8 22 27-48 9-33 (73)
476 TIGR02561 HrpB1_HrpK type III 26.7 3.9E+02 0.0084 22.5 11.0 48 285-340 23-70 (153)
477 KOG2460 Signal recognition par 26.6 4.7E+02 0.01 26.8 9.0 96 311-414 381-481 (593)
478 cd09242 BRO1_ScBro1_like Prote 26.5 2.3E+02 0.005 27.4 7.1 40 350-389 238-277 (348)
479 cd02684 MIT_2 MIT: domain cont 26.5 2.5E+02 0.0055 20.3 7.4 44 272-315 6-50 (75)
480 cd02249 ZZ Zinc finger, ZZ typ 26.5 30 0.00064 22.4 0.7 31 29-60 2-34 (46)
481 COG3483 TDO2 Tryptophan 2,3-di 26.5 4.7E+02 0.01 23.4 9.9 103 276-381 49-158 (262)
482 COG1675 TFA1 Transcription ini 26.4 42 0.00091 28.9 1.7 30 230-261 113-143 (176)
483 PF09613 HrpB1_HrpK: Bacterial 26.4 3.4E+02 0.0073 23.1 7.1 61 314-382 10-70 (160)
484 KOG1310 WD40 repeat protein [G 26.4 3.9E+02 0.0084 27.5 8.4 45 328-380 425-469 (758)
485 PRK05685 fliS flagellar protei 26.1 3.3E+02 0.0072 22.1 7.0 46 322-367 43-89 (132)
486 PF14369 zf-RING_3: zinc-finge 25.7 60 0.0013 19.7 1.8 27 230-258 2-29 (35)
487 KOG0546 HSP90 co-chaperone CPR 25.7 62 0.0013 31.1 2.8 98 279-384 229-337 (372)
488 cd02680 MIT_calpain7_2 MIT: do 25.5 2.4E+02 0.0052 20.5 5.3 31 274-304 8-38 (75)
489 PF04212 MIT: MIT (microtubule 25.4 2.4E+02 0.0052 19.7 7.6 32 273-304 6-37 (69)
490 PF04190 DUF410: Protein of un 25.3 5.4E+02 0.012 23.7 11.6 99 275-380 13-114 (260)
491 PF09416 UPF1_Zn_bind: RNA hel 25.2 22 0.00048 29.7 -0.2 28 29-57 2-31 (152)
492 KOG0985 Vesicle coat protein c 25.1 6.6E+02 0.014 28.3 10.3 74 318-391 1224-1314(1666)
493 PF09205 DUF1955: Domain of un 24.9 4E+02 0.0087 22.1 7.2 79 254-340 67-146 (161)
494 PF04945 YHS: YHS domain; Int 24.9 32 0.00068 22.3 0.6 11 48-58 25-35 (47)
495 PF08394 Arc_trans_TRASH: Arch 24.9 26 0.00057 21.7 0.2 29 30-58 1-32 (37)
496 KOG2168 Cullins [Cell cycle co 24.8 8.9E+02 0.019 26.5 11.2 95 278-381 628-732 (835)
497 KOG2561 Adaptor protein NUB1, 24.8 1.6E+02 0.0035 29.3 5.4 80 317-400 166-255 (568)
498 COG1447 CelC Phosphotransferas 24.7 3.4E+02 0.0075 21.2 6.7 24 366-389 29-52 (105)
499 PRK14890 putative Zn-ribbon RN 24.6 63 0.0014 22.3 1.9 23 236-258 11-33 (59)
500 TIGR01053 LSD1 zinc finger dom 24.4 63 0.0014 19.1 1.7 24 235-258 4-27 (31)
No 1
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=99.81 E-value=2.9e-18 Score=173.85 Aligned_cols=391 Identities=20% Similarity=0.264 Sum_probs=242.9
Q ss_pred CCCCCCCCeeEeeCCceeccCCCCCCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhhhhchhhhccCC
Q 014710 2 FSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV 81 (420)
Q Consensus 2 ~~~i~~Ge~il~e~p~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~~~~~~~~~~ 81 (420)
..+|++|++|+.|.|++.+|.. ..|..|+.. ....|.+|....+|++.++...|..|+++|.. ........
T Consensus 31 ~~~i~~g~~i~~e~p~~~~p~~----~~~~~c~~~-~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 101 (482)
T KOG2084|consen 31 TQAIEAGEVILEEEPLVVGPAS----KSCSRCLGC-SCDHCRRCLEAIECNKCQQRGWALCGKFACSA-DLAKLECE--- 101 (482)
T ss_pred ecccCCCceEEecCcceeeecc----cCCcccccc-chhhhhcCCccHhhhhhhccCccccchhhcch-hhcccccc---
Confidence 3689999999999999999996 556666654 56789999999999887777667788888877 32221110
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCCCCCchhh--HHHHhhccCCCCHHH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014710 82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSL--VEALVAHMSDIDEKQ--LLLYAQIANLVNLILQWPEISINEIAENF 157 (420)
Q Consensus 82 ~~~~~l~~r~l~~~~~~~~~~~~~~~~~~~~~--~~~L~~h~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 157 (420)
..........+... ..... ...+.+.. +..+....+...... ...+....................+..++
T Consensus 102 ~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (482)
T KOG2084|consen 102 PLKLVGAPEECLAL-SSLHE----ESREAIVLLSLLEECSLSAEKPRLRLDLSYLEHGATEDDQSHLLLVLAADCISKLF 176 (482)
T ss_pred chhhccchHHHHHh-hcCCc----cccchHHHHHHHHHhhhhcccccHhHHHhhHHHHhhHHhhccccchhHHHHHHHHH
Confidence 00000000111000 00000 00111111 111111111111100 00111111100000001111233445556
Q ss_pred HHhhhcccccccCCCc----ccccchhhhccccCCCCcCCceeEEeCCEEEEEEecCCCCCC-cc--CCCh------HhH
Q 014710 158 SKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGA-EG--QFDD------IQE 224 (420)
Q Consensus 158 ~~~~~N~~~i~~~~~~----~~g~glyp~~s~~NHSC~PN~~~~f~~~~~~vra~r~I~~Ge-e~--~~~~------~~~ 224 (420)
..+..|++.+.+.... ..|.|+||..+++||||.||+...|++....+++...+.+++ ++ +|.+ .|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~ 256 (482)
T KOG2084|consen 177 PSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQ 256 (482)
T ss_pred HHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecccccCHHHHH
Confidence 6666777766554433 599999999999999999999999999999999999998887 54 3443 355
Q ss_pred HHHhcC--ccccCCCCCCCc--------------------ccCC-C--CCccccCCCCCccCHHHHHHHHHHHHHHHHHH
Q 014710 225 SAILEG--YRCKDDGCSGFL--------------------LRDS-D--DKGFTCQQCGLVRSKEEIKKIASEVNILSKKT 279 (420)
Q Consensus 225 ~~l~~~--~~C~c~~C~~~~--------------------~~~~-~--~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a 279 (420)
..|... |.|.|++|..+- .+.. . ...|.|..|........+.......... .+
T Consensus 257 ~~l~~~~~f~c~c~rc~d~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~ 334 (482)
T KOG2084|consen 257 KQLRQSKLFSCQCPRCLDPTELGTFLSSLRCENCTCGGLLGTSFLDKEDLQWPCTECALVRLKAYVVESREELQNE--LL 334 (482)
T ss_pred HHHhhccceeeecCCCCCCCccccchhhhhhcCCCCCCccCCCcccccCCCccccccccchhHHHHHHHHHHHHhh--cc
Confidence 555543 899999998421 0111 1 2479999998876666565544443321 01
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH----------hhcHHHHHHHH--HHhHHHHHHh
Q 014710 280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----------LEDWKEALAYC--QLTIPVYQRV 347 (420)
Q Consensus 280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~----------~g~~~~A~~~~--~~~l~~~~~~ 347 (420)
... ......+.+...+....+++|.........+..++.. .+.+..+..++ ...+.+++.+
T Consensus 335 ~~~-------~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (482)
T KOG2084|consen 335 DAF-------SDLLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPNAELERLLNLFECRELLKALRDV 407 (482)
T ss_pred ccC-------ChhhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHhhhhhHHHHHHHhh
Confidence 111 1112223444455567778877765554444433332 24566677776 8999999999
Q ss_pred cCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhccc
Q 014710 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL 415 (420)
Q Consensus 348 ~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~~~ 415 (420)
.+..++..++..+.++.....++....++........++....+.++.........+...+....+..
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (482)
T KOG2084|consen 408 KPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDLDKLSEEEQELEEERSEEGPLA 475 (482)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhhHh
Confidence 99999999999999999999999999999999999999999999999988888887777766655443
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.51 E-value=6.1e-13 Score=131.90 Aligned_cols=134 Identities=18% Similarity=0.270 Sum_probs=127.6
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 357 (420)
-|..++.++++.+|+.+|++++++.+.++|+.|+.++.++.+|+.+|...|++++|..+|++++.++++++|..||.++.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~ 411 (420)
.+.+++.++...+++++|..+|++|++|+...+|++|+.+..+...|+....-+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM 380 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998885433
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.50 E-value=7.4e-13 Score=131.31 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=122.2
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 357 (420)
.+..+..+|+++.|+.+++.++....+..|-.|+.+....+.++.+|..++++.+|+.+++++|.+.+.++|+.||.+|.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 45556778999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 407 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~ 407 (420)
.+.+||.+|...|+++||..++++|++|.+..+|..||.+...+..++-+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877666655
No 4
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.27 E-value=3.1e-11 Score=90.30 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
||.++.++.+++.+|...|+|++|++++++++.+ .+.+|+.||.++..+++||.++..+|++++|+.++++|++|.+.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7899999999999999999999999999999999 88889999999999999999999999999999999999999863
No 5
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.16 E-value=1.6e-11 Score=104.84 Aligned_cols=51 Identities=41% Similarity=0.632 Sum_probs=43.5
Q ss_pred CCCcccccchhhhccccCCCCcCCceeEEe----CCEEEEEEecCCCCCCccCCC
Q 014710 170 SELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEGQFD 220 (420)
Q Consensus 170 ~~~~~~g~glyp~~s~~NHSC~PN~~~~f~----~~~~~vra~r~I~~Gee~~~~ 220 (420)
......+.+|||.++|+||||.|||.+.|+ ++.++|+|+|+|++|||+++.
T Consensus 106 ~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 106 SEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp TTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 334567899999999999999999999998 789999999999999998643
No 6
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.97 E-value=1.3e-10 Score=73.07 Aligned_cols=37 Identities=46% Similarity=1.232 Sum_probs=32.4
Q ss_pred CccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhc
Q 014710 30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67 (420)
Q Consensus 30 C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC 67 (420)
|++|++. .+.+|++|+.++|||++||+.+|..|+.+|
T Consensus 1 C~~C~~~-~~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKP-ALKRCSRCKSVYYCSEECQRADWPYHKFEC 37 (37)
T ss_dssp -TTTSSC-SSEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred CcCCCCC-cCCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence 7888885 334999999999999999999999999987
No 7
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.92 E-value=7.3e-10 Score=89.36 Aligned_cols=46 Identities=30% Similarity=0.417 Sum_probs=39.8
Q ss_pred ccchhhhccccCCCCcCCceeEEe--CC--EEEEEEecCCCCCCccCCCh
Q 014710 176 GTGLYPVISIINHSCLPNAVLVFE--GR--LAVVRAVQHVPKGAEGQFDD 221 (420)
Q Consensus 176 g~glyp~~s~~NHSC~PN~~~~f~--~~--~~~vra~r~I~~Gee~~~~~ 221 (420)
+..++|.++++||||.||+.+.+. ++ .+.++|+|+|++||||+++|
T Consensus 67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 445899999999999999999975 33 59999999999999998754
No 8
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.75 E-value=2.1e-07 Score=80.55 Aligned_cols=124 Identities=15% Similarity=0.034 Sum_probs=99.9
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
......+......|++++|+..+++++.+ .+.+.....++.+++.++...|++++|++++++++.+. ..++..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~ 109 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 33445566667789999999999999765 34555667789999999999999999999999999763 3334556
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 402 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~ 402 (420)
..+|..+..+|..+..+|++++|+..+.+|+.+++..+|.+|+.+.++..
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 77777777777777799999999999999999999999999976655443
No 9
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.63 E-value=6.5e-07 Score=72.06 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=95.5
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
++.+..+.....+|++++|++.++.++.. +|.++....++..++.++...|++++|+.++++++... +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 34556667777889999999999998653 57777777888899999999999999999999887543 677
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 402 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~ 402 (420)
+.....++.+|.++..+|++++|..++.++++. .|+++.+.+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~ 117 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQK 117 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHHh
Confidence 777888999999999999999999999999887 577777666543
No 10
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.50 E-value=3e-08 Score=91.34 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=54.5
Q ss_pred hhcccccccCCCcccccchhh-hccccCCCCcCCceeEEeC-CEEEEEEecCCCCCCccCCChHhHHHHh-cCccccCCC
Q 014710 161 ACNAHTICNSELRPLGTGLYP-VISIINHSCLPNAVLVFEG-RLAVVRAVQHVPKGAEGQFDDIQESAIL-EGYRCKDDG 237 (420)
Q Consensus 161 ~~N~~~i~~~~~~~~g~glyp-~~s~~NHSC~PN~~~~f~~-~~~~vra~r~I~~Gee~~~~~~~~~~l~-~~~~C~c~~ 237 (420)
.-|-|+|.-+.-.. -.-||. .++++||.|.|||.++-.| +++.|+++|||+|||||+.-|- .+.+. +.-.|.|..
T Consensus 175 g~nDFSvmyStRk~-caqLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYg-s~fFG~~N~~CeC~T 252 (453)
T KOG2589|consen 175 GGNDFSVMYSTRKR-CAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYG-SGFFGENNEECECVT 252 (453)
T ss_pred cCCceeeeeecccc-hhhheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeec-ccccCCCCceeEEee
Confidence 35777776544322 345555 5889999999999998877 7899999999999999963221 11121 134788888
Q ss_pred CC
Q 014710 238 CS 239 (420)
Q Consensus 238 C~ 239 (420)
|.
T Consensus 253 CE 254 (453)
T KOG2589|consen 253 CE 254 (453)
T ss_pred cc
Confidence 87
No 11
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.45 E-value=1.4e-06 Score=64.79 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=63.8
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH
Q 014710 274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 346 (420)
Q Consensus 274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~ 346 (420)
.+...+..+...|++++|++.+++++.+ .+.+++.|+.++.++.+++.++...|++++|+++++++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 3445566678899999999999999999 77789999999999999999999999999999999999999874
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.44 E-value=3.2e-07 Score=59.31 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=29.2
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 396 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~ 396 (420)
++..+.+||.++..+|++++|+.++++|+++.+..+|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 467899999999999999999999999999999999999994
No 13
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=4.9e-06 Score=75.93 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=94.4
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
.+.+-.+..+++..++|++|+..|.+++. |-|.++..+.- =+.+|.++|.++.|++-|+.+|.+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyycN---RAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIE-----LDPTNAVYYCN---RAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcchHHHH---HHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 34444566777788999999999999987 45777766553 467899999999999999999876
Q ss_pred ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 410 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~ 410 (420)
.|.....|-.||.+|..+|++++|+..|++|+.| -|+.+.+++.+....+-..|
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHhcC
Confidence 6889999999999999999999999999999874 56777666655554444433
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=1.1e-05 Score=67.78 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=92.5
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710 274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 353 (420)
Q Consensus 274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 353 (420)
.....+......|++++|+..+++++.. +|.-..++..++.++...|++++|+..+++++.. .|
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p 89 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DA 89 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CC
Confidence 3455567778889999999999998653 4445677889999999999999999999998765 46
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 408 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~ 408 (420)
.-+..++++|.++..+|++++|+..|++|++ ..|+++.....+.......
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-----~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK-----MSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence 6677899999999999999999999999976 5678887776555544443
No 15
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.37 E-value=7.8e-06 Score=75.62 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=90.0
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
+..|++++|+..|+.+++. +|++...-.++..++.+|...|++++|+.++++++..+ ++||.....++++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~kl 223 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKV 223 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHH
Confidence 3468999999999999775 58888888999999999999999999999988876665 7899999999999
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 404 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l 404 (420)
|.++..+|++++|..+|++.++.+ |+++........|
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL 260 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHH
Confidence 999999999999999999776543 4555555555444
No 16
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.34 E-value=2e-06 Score=91.96 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=113.1
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
..+|.|.++.+ .-+.+.+...+++..|+.+...+..|+.++...|+..+|+.+++++.-+.+++.|.+||.+...+-+|
T Consensus 943 ~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 943 LLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 34567777777 66777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 409 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~ 409 (420)
+...+...+...|+..+.+|+.++...+|++||.+..+..+++.+..
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh
Confidence 99999999999999999999999999999999988776555555533
No 17
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.29 E-value=1.1e-05 Score=69.96 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=95.0
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
......+..+...|++++|+..++++++.. +.++....++..++.++...|++++|+.++++++...... +..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 109 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSAL 109 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHH
Confidence 344556666777899999999999997753 3344456788999999999999999999999988753111 1222
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 407 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~ 407 (420)
..+|..+..++......|++++|+..+.+|+++++...+.++..+.+++.-++.+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 164 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhc
Confidence 3344455555555555677899999999999999999998888877777655543
No 18
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.29 E-value=4.3e-05 Score=64.00 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710 270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349 (420)
Q Consensus 270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 349 (420)
+.++.+...|-.+..+|++++|.++|+.+... +|.-.+.+.+|+-++...|+|++|+..+.+++.+ .
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~ 99 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----K 99 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----C
Confidence 46777888888999999999999998887543 5566677889999999999999999999988544 3
Q ss_pred CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411 (420)
Q Consensus 350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~ 411 (420)
+++| ..++++|..++..|+.++|++.++.|+..-. ++|....+..+.......+
T Consensus 100 ~ddp---~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 100 IDAP---QAPWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred CCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHHHh
Confidence 5555 4789999999999999999999999988762 6677776666655554443
No 19
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.20 E-value=7.2e-05 Score=68.60 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=97.5
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
+.....|...+..|++++|++.|+.++. .+|..+....+...++.++.+.+++++|+.++++.+..+ |.|
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~ 102 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTH 102 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCC
Confidence 3345666777788999999999999976 468888888999999999999999999999999987765 899
Q ss_pred hHHHHHHHHhhHHHHhhc---------------ChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLG---------------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g---------------~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~ 411 (420)
|.+..+++.+|..+..++ +...+...+..--.+++.. |+++...+....|..++..+
T Consensus 103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH
Confidence 999999999998875544 2233343333333344443 58888888888887776644
No 20
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=3.1e-05 Score=75.24 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=88.3
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
+..+|...+..|++++|++.|.+++.. .|.+ ..++..++.++...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 455677788899999999999999864 3555 456788999999999999999999999886 345
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 404 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l 404 (420)
.+..++.+|.++..+|++++|+..|++|+.+ .|+++.....+..+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~~ 113 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL-----APGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 5668999999999999999999999999874 46777665544333
No 21
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.18 E-value=0.00015 Score=64.72 Aligned_cols=131 Identities=20% Similarity=0.176 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
.+.+...|...+..|++.+|++.|+.+... +|.++..-++...++.++...|++.+|+..+++.+..+ |.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 355677888889999999999999999764 68999999999999999999999999999999887665 77
Q ss_pred ChHHHHHHHHhhHHHHhhcChH----HHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHh
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTE----NAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEAS 412 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~----eA~~~l~~A~~i~~~~--~G~~h~~~~~~~~~l~~~~~~~~ 412 (420)
||.+..+++.+|..+..+..-. .-....++|+..++.. -=|+++.+.+....|.+++..+-
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999987653211 1112222333322222 23789999998888888876543
No 22
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=8.8e-05 Score=61.24 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=86.5
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
......+..+...|++++|+..++.++.. +|.+ ..++..++..+...|++++|..++++++.+ +
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~ 81 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL--------D 81 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C
Confidence 33455566677789999999999888653 3443 466778999999999999999999987765 3
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~ 405 (420)
|.....++.+|.++...|++++|+.+++++++. .|+.+....+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI-----CGENPEYSELKERAE 129 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccchHHHHHHHHH
Confidence 556778899999999999999999999999885 456665555444443
No 23
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.14 E-value=3.9e-06 Score=54.07 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
++.++++|+.+|...|++++|+.++++++.++++++|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367889999999999999999999999999999999999994
No 24
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.10 E-value=5.3e-05 Score=62.34 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=77.1
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
..+..+|...+..|++++|++.++.+.+. +|..+..-++...|+.+|...+++++|+..+++.+.+ .|.|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~h 80 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTH 80 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Confidence 34566677778889999999999999664 5888888899999999999999999999998887665 4999
Q ss_pred hHHHHHHHHhhHHHHhhcC
Q 014710 353 PLLGLQYYTCGKLEWFLGD 371 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~ 371 (420)
|.+.++++..|.+++.+..
T Consensus 81 p~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CCccHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.07 E-value=2.8e-05 Score=77.14 Aligned_cols=93 Identities=23% Similarity=0.235 Sum_probs=73.6
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 356 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 356 (420)
..|..+.+.|+..+|...|.+++.+. |+| .++.++|+.+|...|.+++|..++++++.++ |..+
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~-----p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~a 388 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLC-----PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFA 388 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhC-----Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhh
Confidence 34555666788888888888887653 444 4556788888888888888888888888775 7788
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
....+||.+|-.+|++++|+..|++|++|
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 88888888888888888888888888876
No 26
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.06 E-value=7.3e-05 Score=68.20 Aligned_cols=117 Identities=20% Similarity=0.248 Sum_probs=91.9
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
...+..+......|++++|+..+++++.. .|.++....++..++.++...|++++|+..+++++... +.+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~ 103 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNH 103 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCC
Confidence 34455666677789999999999998664 57888888889999999999999999999999987543 567
Q ss_pred hHHHHHHHHhhHHHHhh--------cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFL--------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 404 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~--------g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l 404 (420)
|.+...++.+|.++... |++++|...++++++. -|+++.....+..+
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRM 158 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHH
Confidence 77777888999988865 7889999999988754 45666555444433
No 27
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.05 E-value=6.7e-05 Score=56.60 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
+|++++|+..+++++... |.++ -......++.++...|+|++|+.++++ +..- +......+.+|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHH
Confidence 578999999999998764 3233 333556689999999999999999988 2221 222445556699
Q ss_pred HHHhhcChHHHHHHHHHH
Q 014710 365 LEWFLGDTENAIKSMTEA 382 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A 382 (420)
.+..+|++++|+++|++|
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999986
No 28
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.05 E-value=0.00012 Score=65.47 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=100.1
Q ss_pred ccccCCCCCccC--------HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 014710 250 GFTCQQCGLVRS--------KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLI 321 (420)
Q Consensus 250 ~~~C~~C~~~~~--------~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~ 321 (420)
.|.|+.||-... +.+.+.+.+.+....+. ..+....++++|++.|.-++-. -.+.+..+...+.+...+|
T Consensus 48 V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~~~-~~~~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~LrlA 125 (214)
T PF09986_consen 48 VWVCPHCGYAAFEEDFEKLSPEQKEKIKENISSRWKP-RDFSGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRLA 125 (214)
T ss_pred EEECCCCCCcccccccccCCHHHHHHHHHHHHhhccc-CCCCCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHH
Confidence 588999985432 23334433333332221 1333345788999998888765 3556677778889999999
Q ss_pred HHHHHhhcHHHHHHHHHHhHHHHHHhcCC-CC----hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 322 KILMELEDWKEALAYCQLTIPVYQRVYPQ-FH----PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~-~h----p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
=+|...|+-+....+.+++++.++..|-. .. -.-...++-+|.+....|++++|..++.+.+..-..
T Consensus 126 WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 126 WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999988752 22 244678899999999999999999999887764443
No 29
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=3.7e-06 Score=84.12 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=46.5
Q ss_pred cchhhhcc-ccCCCCcCCceeE-E-eCC--EEEEEEecCCCCCCccCCChHhHHHHh-cCc--cccCCCCCCCcccCCC
Q 014710 177 TGLYPVIS-IINHSCLPNAVLV-F-EGR--LAVVRAVQHVPKGAEGQFDDIQESAIL-EGY--RCKDDGCSGFLLRDSD 247 (420)
Q Consensus 177 ~glyp~~s-~~NHSC~PN~~~~-f-~~~--~~~vra~r~I~~Gee~~~~~~~~~~l~-~~~--~C~c~~C~~~~~~~~~ 247 (420)
...+-..| ++||||+|||.+. | .++ +|=+-|.++|++||||+++|.= +... +.- .|.-+.|.|++...++
T Consensus 187 AT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf-~rYGr~AQ~CyCgeanC~G~IGgk~q 264 (729)
T KOG4442|consen 187 ATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF-DRYGRDAQPCYCGEANCRGWIGGKPQ 264 (729)
T ss_pred ccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc-ccccccccccccCCcccccccCCCCc
Confidence 33443333 6899999999876 3 344 4667999999999999987641 1000 122 3555789999876543
No 30
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.99 E-value=3.2e-05 Score=76.76 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
.+++...+...+++|.+++|..+|+.++.. .|....+.++|+.+|.++|++++|+..++.+|.+.
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------- 418 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------- 418 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-------
Confidence 455566677777788888888888877654 45566777777777777777777777777777652
Q ss_pred ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
|..|.++.++|..|-++|+.++|+..|.+|+.
T Consensus 419 -P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 419 -PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred -chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 55555555555555555555555555555443
No 31
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=5.9e-05 Score=68.46 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=88.7
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
+++.|-.+...|++.+|...|...+..+ |+...+.+++.+|++.+...|++++|...+..+..-| +.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 5666777778899999999999998764 9999999999999999999999999999988876643 78898
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
.-..+++||.++..+|+.++|...|++..+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 889999999999999999999999987654
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.89 E-value=9.2e-05 Score=53.40 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhc-ChHHHHHHHHHHHHH
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEI 385 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g-~~~eA~~~l~~A~~i 385 (420)
..++..++..+...|+|++|+.++.+++.. +|.-...++++|.++..+| ++++|+..+++|+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 356778899999999999999999999887 4667779999999999999 799999999999875
No 33
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.00023 Score=59.83 Aligned_cols=94 Identities=20% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 355 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 355 (420)
+..|...+..|++++|+..|+.++... +......-++..|+.++...|++++|+..+.. ....+..
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~ 117 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQ---------IPDEAFK 117 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcchH
Confidence 345555666777777777777775531 23333334455677777777777777776543 1334445
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
+.....+|.++...|++++|+..|++|+
T Consensus 118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 118 ALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5566667777777777777777777764
No 34
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.81 E-value=0.00051 Score=64.65 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=95.7
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
|..+...+++++|.+.|.++.....+ ..+.....+.+...+.+|... ++++|+.++++++.+|.. .+.....|..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~--~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~--~G~~~~aA~~ 116 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEK--LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE--AGRFSQAAKC 116 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH--CT-HHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh--cCcHHHHHHH
Confidence 34455678899999999999888766 234455677788888887776 999999999999999854 3666778999
Q ss_pred HHHhhHHHHhh-cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710 359 YYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 412 (420)
Q Consensus 359 l~~La~~~~~~-g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~ 412 (420)
+.++|.++... |++++|+++|++|.++++.. | ......+.+.+++.+...+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-G-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-C-ChhhHHHHHHHHHHHHHHhC
Confidence 99999999998 99999999999999999987 2 22344556677777655443
No 35
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.79 E-value=5.6e-06 Score=74.43 Aligned_cols=44 Identities=36% Similarity=0.890 Sum_probs=40.9
Q ss_pred CccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhh
Q 014710 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL 70 (420)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~ 70 (420)
..+|..|+.+.+..+|+.|+.+.||+++||+-+|..|+-.|+.+
T Consensus 319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L 362 (396)
T KOG1710|consen 319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL 362 (396)
T ss_pred cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67888999988899999999999999999999999999999877
No 36
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=97.75 E-value=1.9e-05 Score=84.20 Aligned_cols=41 Identities=32% Similarity=0.531 Sum_probs=34.9
Q ss_pred hccccCCCCcCCceeEE---eC-CEEEEEEecCCCCCCccCCChH
Q 014710 182 VISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEGQFDDI 222 (420)
Q Consensus 182 ~~s~~NHSC~PN~~~~f---~~-~~~~vra~r~I~~Gee~~~~~~ 222 (420)
.+.++||||.|||..-. +| .+++|.|.|+|.+||||||+|.
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 36789999999998764 34 4799999999999999999974
No 37
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00037 Score=61.54 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=59.4
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710 274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 353 (420)
Q Consensus 274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 353 (420)
+.+..+..++.+|++..|.+.+++++.. +|.-..++..++.+|...|+.+.|-+.+++++.+ +|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p 100 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--------AP 100 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--------CC
Confidence 3345566677778888887777777653 4445556666667777777777777777776655 45
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
.-|.++++.|-.++.+|++++|...+.+|+.
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 5555555555555555555555555555543
No 38
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.00098 Score=53.81 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=79.1
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
.++.|......|+.++|+..|++++. .+.......+++..++..+..+|++++|+.+.++.+.- +|.+. .
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~----~p~~~-~ 73 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE----FPDDE-L 73 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcc-c
Confidence 45667778889999999999999976 35567777889999999999999999999999887542 23322 2
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
.+.....+|.++.++|+.+||+..+-+++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445578888999999999999887775
No 39
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.69 E-value=0.002 Score=58.19 Aligned_cols=127 Identities=22% Similarity=0.298 Sum_probs=101.0
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
..+.+++...+..|++++|++.|+.+.. -||..+..-++...++.++.+.+++++|+.+..+-+..+ |.|
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~-----~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~~ 104 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDS-----RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PTH 104 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CCC
Confidence 4455666666778999999999999864 478899999999999999999999999999887765544 789
Q ss_pred hHHHHHHHHhhHHHHhh-----cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~-----g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~ 411 (420)
|.+.++++-.|..+... .+...+...+.....++.+. |+++.+.+...+|..++..+
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~L 166 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDAL 166 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHH
Confidence 99999999999998754 44555666666666666665 68999999888888776544
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.67 E-value=0.0011 Score=59.10 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=38.1
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHH
Q 014710 280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 359 (420)
Q Consensus 280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l 359 (420)
..+...|++++|++.+++++.. .|.+ ..++..++.++...|++++|.+++++++.. +|.....+
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~ 102 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEH-----DPDD---YLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVL 102 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHH
Confidence 3334445555555555544332 1222 233344445555555555555555444432 11112234
Q ss_pred HHhhHHHHhhcChHHHHHHHHHHH
Q 014710 360 YTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 360 ~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
..+|.++...|++++|+.++++++
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 444444444444444444444444
No 41
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.66 E-value=0.0002 Score=50.96 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
.++..+...|++++|+..+++++.. +|.-...++.+|.++..+|++++|+.++++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5788899999999999999988654 4889999999999999999999999999999864
No 42
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.0057 Score=51.29 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
....+..+......++...+...++.+... +|+++.-..+...++..+...|++++|...++.++.. .++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d 80 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APD 80 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCC
Confidence 344444555555677888777777777553 5777777788888999999999999999999987663 255
Q ss_pred ChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
........+.||.++...|++++|+..|+.
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 577788899999999999999999999865
No 43
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.61 E-value=0.00029 Score=75.95 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=114.3
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
...|+.++|+....++..+.++++|-+|+.+...+.+++-..........|+....+++..+..++|++||.++....++
T Consensus 984 ~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nl 1063 (1236)
T KOG1839|consen 984 NRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINL 1063 (1236)
T ss_pred hhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHH
Confidence 44577888888888888888999999999999999999988888888889999999999999999999999999999999
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 409 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~ 409 (420)
+.++...++++.|+.+++.|.++-+..+|+.+-.+......+++.-.
T Consensus 1064 e~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1064 ELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999888777666665533
No 44
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.60 E-value=0.00047 Score=51.49 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=71.7
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 357 (420)
.+..+..+|++++|+..+++++.. .|.+. .+...++.++...+++++|.+++++++... +.++ .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~ 69 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL-----DPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD-----PDNA---K 69 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc-----CCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccch---h
Confidence 344455678899999998888654 23333 667789999999999999999998876642 2222 6
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
.++.+|.++...|++++|..++.+++++
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 7889999999999999999999988764
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.60 E-value=0.0019 Score=57.59 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=72.7
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
+......|++++|++.+++++.. +.++....+...++.++...|++++|.+++.+++... +.+ ...
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~ 171 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-----PQR---PES 171 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCC---hHH
Confidence 33445678999999999888753 2233445567778999999999999999999887642 223 456
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
+..+|.++...|++++|..++++++.+
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788999999999999999999999887
No 46
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.0011 Score=62.29 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=81.7
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-hcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLL 355 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 355 (420)
..|......+++++|++.++++..++... .......+++..++.+|... |++++|++++++++++++.-- .....
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a 154 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSA 154 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhH
Confidence 34445555668899999999998877532 23334578889999999998 999999999999999997764 44556
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
...+.++|.++..+|+|++|++.|++.....
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 7778899999999999999999999987653
No 47
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.53 E-value=0.003 Score=57.52 Aligned_cols=119 Identities=18% Similarity=0.081 Sum_probs=86.3
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh--------hcHHHHHHHHHHhHHHHHHh
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQRV 347 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~--------g~~~~A~~~~~~~l~~~~~~ 347 (420)
...+..+...|++++|+..+++++.. .|+++....++..++.++... |++++|++.+++++..
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---- 144 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIRL-----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---- 144 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----
Confidence 44556667789999999999999764 577777777777888888765 8899999998887654
Q ss_pred cCCCChHHH--------------HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710 348 YPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 409 (420)
Q Consensus 348 ~g~~hp~~~--------------~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~ 409 (420)
+ +.++... ...+.+|.+++..|++.+|+..++++++.. |++|...+....+..+..
T Consensus 145 ~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~ 214 (235)
T TIGR03302 145 Y-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYL 214 (235)
T ss_pred C-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHH
Confidence 2 2333222 223577888999999999999999988763 345666665555555544
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.53 E-value=0.0011 Score=62.85 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=75.5
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
....+..+...|++++|+..|++++.+ .|.+ ..++..++.++...|++++|++.+.+++.+ .|.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~ 130 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALAL-----RPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPT 130 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC
Confidence 344455566778999999988888764 3444 567788999999999999999999888765 355
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
-...+.++|.++...|++++|+..+++++++
T Consensus 131 ~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 131 YNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5667899999999999999999999998863
No 49
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.48 E-value=0.00053 Score=49.95 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=60.5
Q ss_pred HHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 014710 320 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 399 (420)
Q Consensus 320 L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~ 399 (420)
|..+|...++|++|++++.+++.. +|.-...++..|.++..+|++.+|...+++++ ..+|+++....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-----~~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERAL-----ELSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHH-----HHCCCcHHHHH
Confidence 356889999999999999998877 56677789999999999999999999999999 45677777666
Q ss_pred HHHHH
Q 014710 400 LILKL 404 (420)
Q Consensus 400 ~~~~l 404 (420)
+..+|
T Consensus 68 ~~a~l 72 (73)
T PF13371_consen 68 LRAML 72 (73)
T ss_pred HHHhc
Confidence 55443
No 50
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0015 Score=56.27 Aligned_cols=68 Identities=15% Similarity=-0.013 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
....+..++..+...|++++|+..+++++.+ .+.++..+..++++|.++...|++++|+.++++|+.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566788899999999999999999999876 2456778889999999999999999999999999987
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.41 E-value=0.0019 Score=67.80 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=57.9
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 355 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 355 (420)
...+..+...|++++|+..+++++.. .|.++ .++..++.++...|++++|+.++++++.+ .|..
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~ 432 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKL-----NSEDP---DIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDF 432 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccC
Confidence 34445555667777777777777553 34443 34556677777777777777777776654 2333
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
...+.+||.++..+|++++|+.++++|+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556666666666666666666666664
No 52
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.40 E-value=0.0086 Score=50.12 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=77.8
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCC-C-------------hhHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-S-------------VNLMQTREKLIKILMELEDWKEALAYCQLT 340 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~-h-------------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 340 (420)
+...+......|+...++..+++++.+++.-+-+. . ...+.+...++..+...|++++|+.+++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 33334444445677788888888888775433222 1 123345566667777889999999999998
Q ss_pred HHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710 341 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 395 (420)
Q Consensus 341 l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~ 395 (420)
+.. +|.--..+..|-.++...|+..+|+..|++..+.+...+|.+..
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 877 46666778888899999999999999999999999999997553
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.40 E-value=0.0051 Score=54.58 Aligned_cols=111 Identities=7% Similarity=0.005 Sum_probs=80.1
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHH-HHhhc--HHHHHHHHHHhHHHHHHhcCCCCh
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELED--WKEALAYCQLTIPVYQRVYPQFHP 353 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~-~~~g~--~~~A~~~~~~~l~~~~~~~g~~hp 353 (420)
..+..+...|++++|+..|++++.+ .|.++ .++..++.++ ...|+ .++|.+.+++++.. +|
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--------dP 141 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQL-----RGENA---ELYAALATVLYYQAGQHMTPQTREMIDKALAL--------DA 141 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------CC
Confidence 3444556789999999999998764 35554 4456677764 56676 58999998888765 45
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 408 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~ 408 (420)
.-...++.||..+...|++++|+.+++++++.. +++.+...-+ ..++.++
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~----~~~~~r~~~i-~~i~~a~ 191 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLN----SPRVNRTQLV-ESINMAK 191 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCccHHHHH-HHHHHHH
Confidence 556789999999999999999999999998764 3455444333 4444443
No 54
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.40 E-value=0.0067 Score=56.22 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=65.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710 319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 398 (420)
Q Consensus 319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~ 398 (420)
....+....|+|++|+..++..+..+ |+++.....++.||.+++..|++++|+..++++++.+ |+||...
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~ 217 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAA 217 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchh
Confidence 33334466799999999888776655 6678888999999999999999999999988887654 6888888
Q ss_pred HHHHHHHHHHHH
Q 014710 399 ELILKLEEAQAE 410 (420)
Q Consensus 399 ~~~~~l~~~~~~ 410 (420)
+.+.+++.+..+
T Consensus 218 dAl~klg~~~~~ 229 (263)
T PRK10803 218 DAMFKVGVIMQD 229 (263)
T ss_pred HHHHHHHHHHHH
Confidence 888888776544
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.39 E-value=0.0014 Score=52.27 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 394 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 394 (420)
+++..++..+...|++++|.+++.+++.. .+.++.....++.+|.++...|++++|+.++++++.. .|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 45677888999999999999999988654 2566777888999999999999999999999999864 3666
Q ss_pred chHHHHHHHHHHHHH
Q 014710 395 PFMKELILKLEEAQA 409 (420)
Q Consensus 395 ~~~~~~~~~l~~~~~ 409 (420)
+....+...++.+..
T Consensus 73 ~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 73 PKAPDALLKLGMSLQ 87 (119)
T ss_pred CcccHHHHHHHHHHH
Confidence 655555555555533
No 56
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.34 E-value=0.00087 Score=65.39 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=65.2
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 308 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 308 ~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
+.+|.....+.+++.+|...|++++|+..++++|.+- ++++.....++++|.+|..+|++++|+..|++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567778889999999999999999999999998873 666666678999999999999999999999999997
No 57
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.33 E-value=0.0028 Score=66.56 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=74.6
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
+......|++++|+..+++++.+ +|.....+..++.++...|++++|+.++++++.. .|.-...
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~ 401 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDI 401 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 33345678999999999998764 3344567778899999999999999999998775 2344567
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
++.+|.++...|++++|+..+++|+++
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 899999999999999999999999875
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.32 E-value=0.003 Score=66.47 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=63.3
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
+...-.|......|.+++|+.+++.++.+ .|+-..++.+++.++.+.+.+++|+..+++++.. .
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~ 150 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------G 150 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------C
Confidence 33344444555667778888777777654 3444556666777777777777777777766655 3
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
|.-+..++.+|.++..+|++++|..+|+++++
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 55666677777777777777777777777665
No 59
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.30 E-value=0.0034 Score=68.67 Aligned_cols=106 Identities=12% Similarity=0.029 Sum_probs=66.1
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710 281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 360 (420)
Q Consensus 281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 360 (420)
.+...|++++|+..+++++.+ .|.++ .++.+++.++...|++++|++++++++.. +|.-...++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~ 681 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIR 681 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 344455666666666555443 34444 45566777777777777777777776654 344445677
Q ss_pred HhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710 361 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 407 (420)
Q Consensus 361 ~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~ 407 (420)
++|.++..+|++++|+.++++|+++- |+...+.+....+.+.
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~-----P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDI-----DNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCchhhhhhhHHHHH
Confidence 88888888888888888888887654 4555555444444443
No 60
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0061 Score=52.81 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 264 EIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 264 ~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
+..+...++..+-.+...++..|++++|...|..++....... .-...-++.+-+.+.+.++.|+.|+.-|.+++.+
T Consensus 87 ek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 87 EKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 3334445566666778888999999999999999988753211 1222334566777899999999999999999887
Q ss_pred HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 344 ~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
. |..-.++..=|.+|-...++++|++=|.+.+.+
T Consensus 164 ~--------pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 N--------PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred C--------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4 777777888899999999999999888876553
No 61
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=97.27 E-value=0.00019 Score=72.67 Aligned_cols=61 Identities=28% Similarity=0.397 Sum_probs=44.3
Q ss_pred hccccCCCCcCCceeEEeC--C--EEEEEEecCCCCCCccCCChH------h--HHH--HhcCccccCCCCCCCc
Q 014710 182 VISIINHSCLPNAVLVFEG--R--LAVVRAVQHVPKGAEGQFDDI------Q--ESA--ILEGYRCKDDGCSGFL 242 (420)
Q Consensus 182 ~~s~~NHSC~PN~~~~f~~--~--~~~vra~r~I~~Gee~~~~~~------~--~~~--l~~~~~C~c~~C~~~~ 242 (420)
.+.++||||.||+.....+ + ++.++|++||.+|||+|+++. + ... ...+..|.+.+|.+.+
T Consensus 405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (480)
T COG2940 405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTM 479 (480)
T ss_pred ccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCCC
Confidence 4568999999999999643 3 788999999999999997752 1 111 1124567777777543
No 62
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.25 E-value=0.004 Score=61.17 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=55.2
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC-ChHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-HPLLGL 357 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~-hp~~~~ 357 (420)
+......|++++|+..+++++.. .|.+ ..++..++.++...|++++|+.++++++. .|.. ......
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~ 108 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKV-----DPET---VELHLALGNLFRRRGEVDRAIRIHQNLLS-----RPDLTREQRLL 108 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhc-----CCCCCHHHHHH
Confidence 33444556777777777766543 2322 34556667777777777777776665543 1221 123345
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
.+..||.++...|++++|+.++.++++
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 566667777777777777777766654
No 63
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.22 E-value=0.0045 Score=53.51 Aligned_cols=72 Identities=13% Similarity=0.027 Sum_probs=61.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 309 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 309 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
.++.....+..++..+...|++++|+.++++++... +.++..+..++.+|.++..+|++++|+.++++|+++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355566778899999999999999999999988763 344556788999999999999999999999999986
No 64
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.014 Score=56.05 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=81.4
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhh--cCCC-----ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHH
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--YHPF-----SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 345 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~--l~~~-----h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~ 345 (420)
...-.....++..|+|..|...|++++.....- ..+. -.....++.+|+-.+.++++|..|++.|.++|..
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 333445667788899999999999998765321 1111 1234457789999999999999999999998775
Q ss_pred HhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 346 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 346 ~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
.+.| ..++|.=|+++..+|+++.|+..+++|+++
T Consensus 287 ---~~~N---~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 287 ---DPNN---VKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred ---CCCc---hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 2334 458999999999999999999999999875
No 65
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.11 E-value=0.013 Score=57.57 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=54.7
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhhhcCCCCh--hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV--NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~--~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
.+..+|++++|++.+++++.. +|.+. .....+..++..+...|++++|+.++++++.. .|.....
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~ 216 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKL-----GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRA 216 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHH
Confidence 344556666666666665432 22222 23344556666666777777777777766553 2333445
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
++.+|.++...|++++|..++++++..
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666777777777777777777776653
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.003 Score=62.54 Aligned_cols=106 Identities=18% Similarity=0.258 Sum_probs=83.6
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
+..+.+.+|...++.++.....++ +..+....+..+|+.++.+++.+++|+.+++++|.. .|.-+.++-.+
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asi 495 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASI 495 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHH
Confidence 344677889999988886554444 333467778899999999999999999999999876 46667788889
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 402 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~ 402 (420)
|-++..+|+++.|+++|.+|+.+ .|+...+.+++.
T Consensus 496 g~iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 496 GYIYHLLGNLDKAIDHFHKALAL-----KPDNIFISELLK 530 (611)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-----CCccHHHHHHHH
Confidence 99999999999999999999875 345545555443
No 67
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.04 E-value=0.0016 Score=46.62 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=50.0
Q ss_pred HHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710 325 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 402 (420)
Q Consensus 325 ~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~ 402 (420)
...|+|++|++++++++.. +|.-....+.||.++...|++++|...+.++... .|++|.+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-----~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-----DPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-----GTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCHHHHHHHHh
Confidence 5679999999999998776 4667778889999999999999999998887643 344455554443
No 68
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.03 E-value=0.012 Score=62.24 Aligned_cols=117 Identities=13% Similarity=0.049 Sum_probs=81.1
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710 274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 353 (420)
Q Consensus 274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 353 (420)
.....+..+..+|++++|+..+++++.. .|.++ .++..++.++...|++++|++.+++++.. +|
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P 349 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP---YVRAMYARALRQVGQYTAASDEFVQLARE--------KG 349 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc
Confidence 3344556667788899999888888753 45554 34566888899999999999988877653 34
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 409 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~ 409 (420)
........+|.++...|++++|+..|++++++.-..+. +.+.+....+.++..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQIS 402 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHH
Confidence 44445556688888899999999999999888665542 223344444444433
No 69
>PRK15331 chaperone protein SicA; Provisional
Probab=96.99 E-value=0.035 Score=46.96 Aligned_cols=99 Identities=9% Similarity=0.141 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710 270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349 (420)
Q Consensus 270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 349 (420)
+.++.+...|-.++.+|++++|..+|+-+- ++.+.++. ....|+.++...++|++|+..+-.+..+ .
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-----~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~ 101 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLC-----IYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTL-----L 101 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----c
Confidence 357778888888999999999999987773 34555544 4578899999999999999988766443 3
Q ss_pred CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
.+.|.. .+..|+.++.+|+.++|+..++-|..
T Consensus 102 ~~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 KNDYRP---VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cCCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344442 78889999999999999999888887
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.97 E-value=0.0031 Score=55.80 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=77.8
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 357 (420)
.|-.+...|..+.|.+.|++++++ +|.-.+++++-+-.+..+|.+++|.+++++++. -+.-+....
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~ 140 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSD 140 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcch
Confidence 344456678888999999999764 444466777888888899999999999988754 366777888
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
.+-++|-..+.+|+.+.|..+|++|+++..
T Consensus 141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 141 TLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 999999999999999999999999988543
No 71
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=96.96 E-value=0.00058 Score=66.50 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=33.1
Q ss_pred cccCCCCcCCceeEEe--CC------EEEEEEecCCCCCCccCCChHh
Q 014710 184 SIINHSCLPNAVLVFE--GR------LAVVRAVQHVPKGAEGQFDDIQ 223 (420)
Q Consensus 184 s~~NHSC~PN~~~~f~--~~------~~~vra~r~I~~Gee~~~~~~~ 223 (420)
=++||||.||+.+... ++ .+.+.|+++|++|+|+|+++-.
T Consensus 274 RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~ 321 (364)
T KOG1082|consen 274 RFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGK 321 (364)
T ss_pred ccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcc
Confidence 3789999999999853 32 5788999999999999987753
No 72
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.011 Score=56.57 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=60.2
Q ss_pred cCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhh
Q 014710 284 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 363 (420)
Q Consensus 284 ~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 363 (420)
-.|+|++|+...+.-+.+.++. | .....-+++.+|+..++-.|+|+.|++++++.+.+...+ ++--.-|...|.||
T Consensus 207 lLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLg 282 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLG 282 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhh
Confidence 3467788877666555554332 2 222334566777777777777777777777777665443 23334455566666
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHH
Q 014710 364 KLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 364 ~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
..|.-+.++++|++|.++-++|.+
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655543
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.0013 Score=65.11 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=81.6
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
...|+|++|++-|+.++.. -|++. .+++.|+-.+....+.++|+..|+++|.+. |...++.|+|
T Consensus 441 ~ls~efdraiDcf~~AL~v-----~Pnd~---~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNl 504 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQV-----KPNDY---LLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNL 504 (579)
T ss_pred hcchHHHHHHHHHHHHHhc-----CCchH---HHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhh
Confidence 3467899999999888753 35554 456788888888889999999999999986 8888999999
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC
Q 014710 363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNS 394 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 394 (420)
|..++++|.|+||.++|-.|+.+.+...+..-
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~ 536 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHNK 536 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhccccccc
Confidence 99999999999999999999999999765443
No 74
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=96.90 E-value=0.001 Score=44.76 Aligned_cols=47 Identities=21% Similarity=0.450 Sum_probs=38.9
Q ss_pred cCccccCCC---CCcCCCCCCcccccChhhchhhhhhhHhhchhhhhchh
Q 014710 29 RCDGCFASS---NLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDK 75 (420)
Q Consensus 29 ~C~~C~~~~---~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~~~~ 75 (420)
.|.+|.... ..+.|+.|+++.|||++=...+..+|+--|..++.+..
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRqvNe 50 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQVNE 50 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHHhcc
Confidence 377777753 36899999999999999998887899999999987543
No 75
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.87 E-value=0.014 Score=63.19 Aligned_cols=103 Identities=18% Similarity=0.056 Sum_probs=76.7
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH-----------
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV----------- 343 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~----------- 343 (420)
+...+..+..+|++++|+..+++++.. .|.+ ..++..++.++...|+|++|+.++++++..
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 96 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQK-----DPND---AEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL 96 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence 345566667788899998888888753 3333 356777888888889999998888877642
Q ss_pred ----------------HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 344 ----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 344 ----------------~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
+....+...+..+..+..+|..+...|++++|...|++++++
T Consensus 97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 154 (899)
T TIGR02917 97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI 154 (899)
T ss_pred HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 122233466777788888999999999999999999988764
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.87 E-value=0.021 Score=60.14 Aligned_cols=99 Identities=9% Similarity=-0.077 Sum_probs=81.0
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
+.....+..+...+.+++|+..+++++.. .|.-...+..++.++.++|++++|.+++++++. .|
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~ 184 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QH 184 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cC
Confidence 33444555566678899999988888753 555567778899999999999999999988764 46
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
|.-...+..+|.++...|+.++|...|++|++...
T Consensus 185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 77788999999999999999999999999987643
No 77
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.86 E-value=0.024 Score=62.37 Aligned_cols=105 Identities=10% Similarity=0.119 Sum_probs=87.3
Q ss_pred hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 361 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 361 (420)
....|++++|+..+++++...+. .++.+ ....+...++.++...|++++|..++++++...+...+..++..+..+..
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~-~g~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQ-HDVYH-YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhh-hcchH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 45578999999999998877654 33333 33456788999999999999999999999999988776777777777888
Q ss_pred hhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 362 CGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 362 La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
+|.++...|++++|...+++++.+...
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 999999999999999999999998774
No 78
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.84 E-value=0.017 Score=60.95 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=71.2
Q ss_pred HHhhhhcCCChHH----HHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710 278 KTLALTSCGNHQE----VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 353 (420)
Q Consensus 278 ~a~~~~~~g~~~~----a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 353 (420)
.+..+...|++++ |+..+++++.. .|++ ..++..++.++...|++++|+.++++++.. +|
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P 315 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDN---VRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HP 315 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CC
Confidence 4445566778775 67778777653 3443 467788899999999999999999998764 34
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
.....+..||.++...|++++|+..|+++++.
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44556778999999999999999999888774
No 79
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.83 E-value=0.0058 Score=43.24 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=48.4
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
.|..+..+|++++|+..+++++.. +|.-.+++..++.++...|++++|+.++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677889999999999998653 4667888899999999999999999999998765
No 80
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.76 E-value=0.0085 Score=42.89 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhh-cHHHHHHHHHHhHHH
Q 014710 274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV 343 (420)
Q Consensus 274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~ 343 (420)
.....+..++..|++++|+..|++++.+ .|+ -..++.+++.++...| ++++|++++++++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3445666778889999999999999875 344 4558889999999999 899999999998864
No 81
>PRK12370 invasion protein regulator; Provisional
Probab=96.75 E-value=0.0066 Score=62.85 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH
Q 014710 286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 365 (420)
Q Consensus 286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~ 365 (420)
+++++|+..+++++++ .|+++ .++..++.++...|++++|+.++++++.. .|.-+..++.+|.+
T Consensus 318 ~~~~~A~~~~~~Al~l-----dP~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 381 (553)
T PRK12370 318 NAMIKAKEHAIKATEL-----DHNNP---QALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWN 381 (553)
T ss_pred hHHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 3456777777777553 45554 45566788888889999999999888775 34444567888999
Q ss_pred HHhhcChHHHHHHHHHHHHH
Q 014710 366 EWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 366 ~~~~g~~~eA~~~l~~A~~i 385 (420)
+...|++++|+..+++|+++
T Consensus 382 l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhc
Confidence 98999999999998888765
No 82
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.67 E-value=0.018 Score=63.22 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
.|++++|+..+++++.. .| . ...+.+++.++.+.|++++|+..+++++.. .|.-...+.++|.
T Consensus 589 ~Gr~~eAl~~~~~AL~l-----~P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~ 651 (987)
T PRK09782 589 PGQPELALNDLTRSLNI-----AP---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGY 651 (987)
T ss_pred CCCHHHHHHHHHHHHHh-----CC---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 37777777777777643 23 2 456778888888899999999988887766 3444568889999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 014710 365 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 399 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~ 399 (420)
++...|++++|+.+|++|+++ .|+++....
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~ 681 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKG-----LPDDPALIR 681 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 999999999999999999874 566665543
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.66 E-value=0.0098 Score=57.64 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=72.0
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710 281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 360 (420)
Q Consensus 281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 360 (420)
....+|++++|+..+++++.. .|.+ ......++.++...|++++|+.++++.+..... ........+.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~ 190 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWW 190 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHH
Confidence 345678999999999999775 3444 455678899999999999999999998766532 2223345677
Q ss_pred HhhHHHHhhcChHHHHHHHHHHH
Q 014710 361 TCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 361 ~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
.+|.++..+|++++|+..|+++.
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 89999999999999999999984
No 84
>PRK12370 invasion protein regulator; Provisional
Probab=96.65 E-value=0.024 Score=58.65 Aligned_cols=90 Identities=16% Similarity=0.017 Sum_probs=63.0
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
+......|++++|+..+++++.+ .|+++. ++..++.++...|++++|+.++++++.+- +.++..
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~~~~--- 408 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLL-----SPISAD---IKYYYGWNLFMAGQLEEALQTINECLKLD-----PTRAAA--- 408 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCChhh---
Confidence 34445678999999999998764 455554 56778899999999999999999886652 333322
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
.+.++.++...|++++|+..+++++.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 22344445567778888877777654
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.088 Score=49.14 Aligned_cols=127 Identities=14% Similarity=0.179 Sum_probs=83.1
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QF 351 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~ 351 (420)
.++...+..++..|=++.|.++|..+... ....-.++..|..+|-...+|++|++.++++..+ -| .+
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q~~ 175 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQTY 175 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCccc
Confidence 33444556667777777787777666431 2234467778888888888999998888775433 23 45
Q ss_pred ChHHHHHHHHhhHHHHhhcChHHHHHHHH---------------------------HHHHHHHHhcCCCCchHHHHHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMT---------------------------EAVEILRITHGTNSPFMKELILKL 404 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~---------------------------~A~~i~~~~~G~~h~~~~~~~~~l 404 (420)
...+|.-+=+||+.+....+.+.|+..+. +|++.++...-.|+.++.++..+|
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 66667666677666665555555555444 444556666666777888888888
Q ss_pred HHHHHHH
Q 014710 405 EEAQAEA 411 (420)
Q Consensus 405 ~~~~~~~ 411 (420)
.++.+++
T Consensus 256 ~~~Y~~l 262 (389)
T COG2956 256 YECYAQL 262 (389)
T ss_pred HHHHHHh
Confidence 8876654
No 86
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.61 E-value=0.035 Score=44.82 Aligned_cols=64 Identities=16% Similarity=0.013 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
+...++.++-..|+.++|+.++++++. .|...+.....+..+|..+..+|++++|+.++++++.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788889999999999999999976 3666777788999999999999999999999998875
No 87
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.53 E-value=0.021 Score=64.41 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=75.4
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-----------HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-----------LMQTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-----------~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
....+..+..+|++++|+..+++++... |.+.. .......++..+...|++++|+.++++++..
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445566677899999999999987653 33321 1122345577888899999999999999876
Q ss_pred HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 344 ~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
+|.-...++.||.++..+|++++|+.+|++|+++
T Consensus 381 --------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 381 --------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444567889999999999999999999999976
No 88
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.48 E-value=0.26 Score=39.17 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=79.5
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCC--CChhHHH--HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP--FSVNLMQ--TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~--~h~~~~~--~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
.++.+-...|-|++|...++++....+++=.. .++.=++ .+..|+.++..+|+|++++.-..++|.-+.+- |+-|
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL~ 92 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GELH 92 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-cccc
Confidence 34455555678889989999998887654222 2333333 45678899999999999999999998877654 6777
Q ss_pred hHHHHHH----HHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCC
Q 014710 353 PLLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 392 (420)
Q Consensus 353 p~~~~~l----~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~ 392 (420)
..-|..+ +.=|.++...|+.+||++.++.|-+++...-|+
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 7666554 444777888999999999999999998877664
No 89
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=96.37 E-value=0.0018 Score=68.06 Aligned_cols=42 Identities=33% Similarity=0.529 Sum_probs=34.5
Q ss_pred ccccCCCCcCCceeE-E--eC-CEEEEEEecCCCCCCccCCChHhH
Q 014710 183 ISIINHSCLPNAVLV-F--EG-RLAVVRAVQHVPKGAEGQFDDIQE 224 (420)
Q Consensus 183 ~s~~NHSC~PN~~~~-f--~~-~~~~vra~r~I~~Gee~~~~~~~~ 224 (420)
+-..||||.|||... | +| .++.|.|+|||++|||++|+|.+.
T Consensus 1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 346799999999876 3 44 378999999999999999997643
No 90
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.36 E-value=0.0077 Score=37.20 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
++.+||.++..+|++++|+.+|++|+.+-..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999966543
No 91
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.28 E-value=0.12 Score=49.69 Aligned_cols=104 Identities=17% Similarity=0.104 Sum_probs=86.4
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
.|+|+.|++.|+..+.+..++ .+...-.++.+.|+..|.-..++..|+.|.++-|.+.+.+ .+-.--+.+++.||.
T Consensus 248 lg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgn 323 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGN 323 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHH
Confidence 578999999999998876554 2344556778899999999999999999999999998766 334455788999999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHhcCC
Q 014710 365 LEWFLGDTENAIKSMTEAVEILRITHGT 392 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A~~i~~~~~G~ 392 (420)
++-.+|..++|+.+..+++++-.....+
T Consensus 324 a~~alg~h~kAl~fae~hl~~s~ev~D~ 351 (639)
T KOG1130|consen 324 AFNALGEHRKALYFAELHLRSSLEVNDT 351 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999987776433
No 92
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.26 E-value=0.058 Score=56.51 Aligned_cols=99 Identities=17% Similarity=0.089 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710 270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349 (420)
Q Consensus 270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 349 (420)
.+++.++.+|..++.+|++++|.+++..+++. +|.-...+..|+.+|-+.|+.+.|+.....+ ..+-
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llA-----AHL~ 203 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLA-----AHLN 203 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHH-----HhcC
Confidence 34667777888888889999999999999764 4445667788999999999999888765543 3333
Q ss_pred CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
+..+ ..+..+|.....+|++++|+-+|.||+.
T Consensus 204 p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 204 PKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred CCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3333 5678888888888999998888888876
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.13 Score=51.59 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=82.3
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH---------------
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV--------------- 343 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~--------------- 343 (420)
|=-.+..+..++|++.++ .+.+...- +..--++++..+|+|++|++.|+.++.-
T Consensus 86 AYc~Yrlnk~Dealk~~~--------~~~~~~~~---ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK--------GLDRLDDK---LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHcccHHHHHHHHh--------cccccchH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 333344556666665544 22222322 3334467888889999998888877321
Q ss_pred --------HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710 344 --------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 413 (420)
Q Consensus 344 --------~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~ 413 (420)
+....|..--..=..+|+.|-++...|+|.+|++.|++|++|-...+-.+..--.++...|+-++-++-|
T Consensus 155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 1222333333355688999999999999999999999999999998877666555666666666665554
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.23 E-value=0.034 Score=45.51 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
......++..+...|++++|..++++++.. +|.....++.+|.++...|++++|..++++++++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455778899999999999999998887664 2445678889999999999999999999998886
No 95
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.23 E-value=0.011 Score=35.66 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=27.0
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
+..++.+|.+++.+|++++|+..+++|+++-
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999999863
No 96
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.23 E-value=0.063 Score=57.90 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=78.0
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
....|..+...|++++|++.+++++.. .|.++. +...++.++...|++++|+.++++++.. +|.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~~---a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~ 115 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQNDD---YQRGLILTLADAGQYDEALVKAKQLVSG--------APD 115 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC
Confidence 344555667789999999999998764 355544 3457888999999999999999988665 233
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 397 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~ 397 (420)
-+. ++.+|.++...|++++|+..+++++++ .|+++.+
T Consensus 116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-----~P~~~~~ 152 (765)
T PRK10049 116 KAN-LLALAYVYKRAGRHWDELRAMTQALPR-----APQTQQY 152 (765)
T ss_pred CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence 344 788899999999999999999999884 4555544
No 97
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.23 E-value=0.011 Score=35.77 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=27.3
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
+..++++|.++..+|++++|+..+++|+++-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4678999999999999999999999999863
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.19 E-value=0.085 Score=58.03 Aligned_cols=109 Identities=15% Similarity=-0.012 Sum_probs=85.2
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 357 (420)
.+.....+|++++|...+++++...+..-++.++....+...++.++...|++++|...+++++.+.+... ......
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~ 613 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQ 613 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHH
Confidence 34455678999999999999988876654444444444566788888999999999999999999877443 233456
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
.+..+|.++...|++++|...+.++..+....
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 77789999999999999999999998876553
No 99
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.17 E-value=0.068 Score=57.94 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
.++..++.++...|++++|.+++++++.. +|.-...+..+|.++...|+ .+|+.++++++.
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 44555666666666666666666665543 12222334444444444444 444444444443
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.08 E-value=0.019 Score=48.01 Aligned_cols=67 Identities=12% Similarity=-0.012 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710 319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 398 (420)
Q Consensus 319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~ 398 (420)
.++.++...|++++|+.++++++.. .|.-...++.+|.++..+|++++|+..|++|+++ .|+++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a~ 95 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEPV 95 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHH
Confidence 5688899999999999999998655 4666788899999999999999999999999974 56666543
No 101
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.02 E-value=0.074 Score=39.06 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
++..++..+...|++++|+.++++++... | .++ ..++.+|.++...|++++|+.++++++++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD----P-DNA---DAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC----C-ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678888999999999999998886652 2 222 67889999999999999999999999875
No 102
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.01 E-value=0.049 Score=58.60 Aligned_cols=87 Identities=8% Similarity=-0.003 Sum_probs=41.4
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710 281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 360 (420)
Q Consensus 281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~ 360 (420)
....+|+++.|++.++++++. .|.++..+. .++.+++..|+.++|+.++++++ ...|.-...+.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~---dll~l~~~~G~~~~A~~~~eka~--------~p~n~~~~~ll 106 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA-----GPLQSGQVD---DWLQIAGWAGRDQEVIDVYERYQ--------SSMNISSRGLA 106 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh-----CccchhhHH---HHHHHHHHcCCcHHHHHHHHHhc--------cCCCCCHHHHH
Confidence 334456666666666666543 233321111 44445555555555555555543 11112222333
Q ss_pred HhhHHHHhhcChHHHHHHHHHHH
Q 014710 361 TCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 361 ~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
-+|.++...|++++|+.+|++++
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555543
No 103
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.01 E-value=0.038 Score=62.43 Aligned_cols=90 Identities=16% Similarity=0.031 Sum_probs=44.7
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
+..+...|++++|++.|++++.. .|.++ .++..++.++...|++++|++++++++.. .|.....
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~-----~P~~~---~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~ 673 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTR-----EPGNA---DARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNT 673 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHH
Confidence 34445566777777777666553 23333 34455566666666666666555544321 1122223
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
...+|.++...|++++|+.++++++.
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 33444444444444444444444433
No 104
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.98 E-value=0.063 Score=53.34 Aligned_cols=88 Identities=10% Similarity=-0.013 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHH--hHHHHHHhcCCCChHHHHHHHHhh
Q 014710 286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL--TIPVYQRVYPQFHPLLGLQYYTCG 363 (420)
Q Consensus 286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~--~l~~~~~~~g~~hp~~~~~l~~La 363 (420)
++.+.+++..++.++ .+|.++. ...+..++.++.+.|+|++|.+++++ ++.. +|.--. +..||
T Consensus 313 ~~~~~~~~~~e~~lk-----~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--------~p~~~~-~~~La 377 (409)
T TIGR00540 313 EDNEKLEKLIEKQAK-----NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKE--------QLDAND-LAMAA 377 (409)
T ss_pred CChHHHHHHHHHHHH-----hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--------CCCHHH-HHHHH
Confidence 344455555555543 3677775 56778889999999999999999884 4333 233222 34889
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 364 KLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 364 ~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
.++..+|+.++|..++++++..+-.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999876543
No 105
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.92 E-value=0.11 Score=48.60 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=82.4
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHHHHhh-cHHHHHHHHHHhHHHHHH------hcCCCChH
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQR------VYPQFHPL 354 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h-~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~------~~g~~hp~ 354 (420)
..+|+++.|..++.++..... .+.|.. -.+.++.++++.-....+ ++++|..+.++++++.+. ..+.....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999877654 333433 346778888888888889 999999999999999765 12233456
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 398 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~ 398 (420)
....+..|+.++...+..+...+ -.++++.++..+|. ||.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~-~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN-KPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC-CcHHH
Confidence 67888888999988887654333 55667777777774 55544
No 106
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.90 E-value=0.11 Score=39.97 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=61.2
Q ss_pred HHHhhcHHHHHHHHHHhHHHHHHhcCCC-ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710 324 LMELEDWKEALAYCQLTIPVYQRVYPQF-HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 402 (420)
Q Consensus 324 ~~~~g~~~~A~~~~~~~l~~~~~~~g~~-hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~ 402 (420)
....||+.+|++...+..+....-.... .......+.++|.++...|++++|...+++|+++.+..- |..-....+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 3456999999999999988766555433 335677789999999999999999999999999998862 3333444444
Q ss_pred HHHHH
Q 014710 403 KLEEA 407 (420)
Q Consensus 403 ~l~~~ 407 (420)
-+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44433
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.88 E-value=0.095 Score=46.44 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH
Q 014710 286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 365 (420)
Q Consensus 286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~ 365 (420)
++.++++..+++.+.. .|.+ ...+..|+.+|...|++++|+..+++++.+. |.-...+..+|.+
T Consensus 53 ~~~~~~i~~l~~~L~~-----~P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~a 116 (198)
T PRK10370 53 QTPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALATV 116 (198)
T ss_pred hhHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 3445555555555443 2444 5578889999999999999999999887653 5556677888987
Q ss_pred H-HhhcC--hHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710 366 E-WFLGD--TENAIKSMTEAVEILRITHGTNSPFMKELI 401 (420)
Q Consensus 366 ~-~~~g~--~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~ 401 (420)
+ ...|+ +++|...+++|++. .|+++.....+
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~-----dP~~~~al~~L 150 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALAL-----DANEVTALMLL 150 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHh-----CCCChhHHHHH
Confidence 5 56677 59999999999874 55666554433
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.86 E-value=0.022 Score=40.53 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=41.7
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
+.+|++++|++.+++++.. .|. -..++..++.+|...|++++|.+++.+++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-----NPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-----TTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3568999999999999765 233 4556668999999999999999998887654
No 109
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.05 Score=53.38 Aligned_cols=102 Identities=22% Similarity=0.224 Sum_probs=75.0
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
|..+..+++|++|++.|..++.+.. ..|--++..+.+.+...-++.=.+++.+|+.++.+++++ .|.--.+
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~-~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A 539 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEP-REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQA 539 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhcc-ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHH
Confidence 3345678899999999999988743 233334333333332222233348999999999998776 5777788
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
+-.||++...+|+.++|+++++++..+.+..
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999998876654
No 110
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.85 E-value=0.12 Score=55.69 Aligned_cols=97 Identities=12% Similarity=-0.046 Sum_probs=72.7
Q ss_pred hhcCCChHHHHHHHHHHHHHhhh---hc----CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKK---LY----HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~---~l----~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
+..+|++++|+..++.+...... ++ ...+.....+...++.++...|++++|++.+++++.. .|.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~ 391 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APG 391 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 45678899999888888664210 11 1112234566678889999999999999998888655 233
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
-...++.+|.++...|++++|+..|++|+.+.
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 34688999999999999999999999998864
No 111
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.84 E-value=0.04 Score=51.57 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=69.2
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 356 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 356 (420)
..|......|+.++|+..++++++. .|.++.+ +..++.+++..|+.+++.+......... +.+|.
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~-- 215 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPD-- 215 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHH--
Confidence 3444456689999999999999875 4666665 4456778888899998766655543333 33333
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 398 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~ 398 (420)
.+..+|.++..+|++++|+.++++++. ..|++|.+.
T Consensus 216 -~~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~ 251 (280)
T PF13429_consen 216 -LWDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWL 251 (280)
T ss_dssp -HCHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHH
T ss_pred -HHHHHHHHhcccccccccccccccccc-----ccccccccc
Confidence 456778999999999999999999774 456666554
No 112
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.81 E-value=0.021 Score=34.39 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=28.1
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
+..++.+|.++..+|++++|..++++|+++-.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35789999999999999999999999998743
No 113
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.81 E-value=0.13 Score=45.74 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 394 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 394 (420)
+.+...+......|+|.+|++.+++++..+ +.+|....+.+.+|.++...|++.+|+..+++-++. =|+|
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~ 75 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNS 75 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC
Confidence 445667778889999999999999886664 778999999999999999999999999888776542 3678
Q ss_pred chHHHHHHHHHHH
Q 014710 395 PFMKELILKLEEA 407 (420)
Q Consensus 395 ~~~~~~~~~l~~~ 407 (420)
|.+..++.+++.+
T Consensus 76 ~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 76 PKADYALYMLGLS 88 (203)
T ss_dssp TTHHHHHHHHHHH
T ss_pred cchhhHHHHHHHH
Confidence 8887777666665
No 114
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.059 Score=49.24 Aligned_cols=89 Identities=22% Similarity=0.162 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710 317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 396 (420)
Q Consensus 317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~ 396 (420)
.++.+--+...|+|..|.+-++.-+.-| +.++.+..++|.||.+++.+|++++|...+..+.+ .| |+||-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k----~~-P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK----DY-PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH----hC-CCCCC
Confidence 4455556677799999999888776654 88899999999999999999999999999988877 22 67888
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 014710 397 MKELILKLEEAQAEASYKL 415 (420)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~ 415 (420)
.-+.+.+|+.+..++...+
T Consensus 214 ApdallKlg~~~~~l~~~d 232 (262)
T COG1729 214 APDALLKLGVSLGRLGNTD 232 (262)
T ss_pred ChHHHHHHHHHHHHhcCHH
Confidence 8888888888876665443
No 115
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.76 E-value=0.0078 Score=60.75 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=51.1
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
++.-.++++-|+-+|.++++++.|.-++++++.+ .|.=...+-.+|.++..+|+.++|+.++++|.-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 3445667777777788888888888888877765 566667777888888888888888888888864
No 116
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.75 E-value=0.061 Score=45.25 Aligned_cols=77 Identities=17% Similarity=0.089 Sum_probs=64.6
Q ss_pred CCC-hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 308 PFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 308 ~~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
.-. ...++..+.++..+...|++++|..+++-+..+ .|....-+++||-++..+|++++|+..|.+|..+
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L- 98 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI- 98 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 335 677888899999999999999999998866443 5778889999999999999999999999999764
Q ss_pred HHhcCCCCchH
Q 014710 387 RITHGTNSPFM 397 (420)
Q Consensus 387 ~~~~G~~h~~~ 397 (420)
.+|+|..
T Consensus 99 ----~~ddp~~ 105 (157)
T PRK15363 99 ----KIDAPQA 105 (157)
T ss_pred ----CCCCchH
Confidence 5677644
No 117
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.047 Score=54.38 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710 287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 366 (420)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~ 366 (420)
++.-|.+.+.++.. ..|++|.++ +.++.+....+.|.+|..+++.++...+.+..+- +...-.+.+||.++
T Consensus 395 n~kLAe~Ff~~A~a-----i~P~Dplv~---~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA-----IAPSDPLVL---HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAY 465 (611)
T ss_pred cHHHHHHHHHHHHh-----cCCCcchhh---hhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHH
Confidence 34444444444443 346777654 4567777778999999999999998777776632 24444678999999
Q ss_pred HhhcChHHHHHHHHHHHHHHH
Q 014710 367 WFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 367 ~~~g~~~eA~~~l~~A~~i~~ 387 (420)
-.++++++|+.++++|+..-.
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999987543
No 118
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.74 E-value=0.1 Score=47.84 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 393 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 393 (420)
.......+......|+|++|++.+++++. .+| ..|......+.||.++...+++++|+..+++.++. =|+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcC
Confidence 33455667777888999999999888766 344 55888889999999999999999999999998764 478
Q ss_pred CchHHHHHHHHHHH
Q 014710 394 SPFMKELILKLEEA 407 (420)
Q Consensus 394 h~~~~~~~~~l~~~ 407 (420)
||.+..++.+++-+
T Consensus 102 ~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 102 HPNIDYVLYMRGLT 115 (243)
T ss_pred CCchHHHHHHHHHh
Confidence 88888877777654
No 119
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.71 E-value=0.071 Score=50.49 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 311 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 311 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
......+..++.+|...|++++|+..+++++.. .|.....++.+|.++...|++++|+..+++|+++
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344677888999999999999999999998775 3555678999999999999999999999999874
No 120
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.17 Score=48.74 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=86.2
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 350 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 350 (420)
++..-+.+...+.+|++..|-+.|..++.+ .|+|.. ...++.+.+-+...+|+.++|+.-|..++.+
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------- 316 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------- 316 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-------
Confidence 333344566677889999999999998764 566766 4567889999999999999999999999877
Q ss_pred CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
.+.+...+..-|..+..++++++|...+++|++.-..
T Consensus 317 -D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 317 -DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5888889999999999999999999999999886443
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.63 E-value=0.087 Score=51.74 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=72.2
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710 274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 353 (420)
Q Consensus 274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 353 (420)
..+..|...+..|++++|+..+..++.. +|+|++...+ .++++...++.++|.+.+++++... |
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N~~~~~~---~~~i~~~~nk~~~A~e~~~kal~l~--------P 371 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDNPYYLEL---AGDILLEANKAKEAIERLKKALALD--------P 371 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHhcC--------C
Confidence 3455666667778888888888886654 5788887664 5778899999999999999987764 4
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
.....-.++|.++++.|++.+|+..|++.+
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 445567888999999999998887777654
No 122
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=95.61 E-value=0.0029 Score=64.80 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=37.5
Q ss_pred ccccCCCCcCCceeE--EeCC------EEEEEEecCCCCCCccCCCh--HhHHHHhcCccccCC--CCCC
Q 014710 183 ISIINHSCLPNAVLV--FEGR------LAVVRAVQHVPKGAEGQFDD--IQESAILEGYRCKDD--GCSG 240 (420)
Q Consensus 183 ~s~~NHSC~PN~~~~--f~~~------~~~vra~r~I~~Gee~~~~~--~~~~~l~~~~~C~c~--~C~~ 240 (420)
+-++||||+||..+. |... .+.+-|.+-|++|.|++.+| ..-..-.....|.|. .|.|
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Crg 1259 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRG 1259 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhhc
Confidence 457899999999876 5332 35677889999999999544 321111123567663 3544
No 123
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.54 E-value=0.034 Score=34.24 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQR 346 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~ 346 (420)
++.+|+.+|...|+|++|+++++++|.+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999998866543
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.54 E-value=0.075 Score=48.08 Aligned_cols=86 Identities=22% Similarity=0.181 Sum_probs=69.4
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
...|++..|+..++++..+ .|++ .++++.++.+|.+.|++++|..-+.+++++. +..| ..+.+|
T Consensus 111 ~~~g~~~~A~~~~rkA~~l-----~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~p---~~~nNl 174 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARL-----APTD---WEAWNLLGAALDQLGRFDEARRAYRQALELA-----PNEP---SIANNL 174 (257)
T ss_pred HHhcchHHHHHHHHHHhcc-----CCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCCc---hhhhhH
Confidence 3468999999988888653 3444 4567788999999999999999999988775 3333 367899
Q ss_pred hHHHHhhcChHHHHHHHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~ 384 (420)
|.++.-.|+++.|+.++.+|..
T Consensus 175 gms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 125
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.51 E-value=0.31 Score=35.68 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=54.2
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 348 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 348 (420)
+++..+++.+.+.++|+..++++++.. ++.+..+.+...|+++|...|+++++++++.+=+++.+..-
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344445566667789999999998764 34567899999999999999999999999988888776654
No 126
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.077 Score=51.78 Aligned_cols=95 Identities=19% Similarity=0.049 Sum_probs=72.9
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 307 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 307 ~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
-|+++. ++.+|++.|.++++.++|++.+++++..- . .=+..++.||++|-++++.++|..++.+-++..
T Consensus 428 kPnDsR---lw~aLG~CY~kl~~~~eAiKCykrai~~~-----d---te~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 428 KPNDSR---LWVALGECYEKLNRLEEAIKCYKRAILLG-----D---TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred CCCchH---HHHHHHHHHHHhccHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 355543 45678999999999999999988876542 1 157799999999999999999999999999988
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710 387 RITHGTNSPFMKELILKLEEAQAEASY 413 (420)
Q Consensus 387 ~~~~G~~h~~~~~~~~~l~~~~~~~~~ 413 (420)
..-|.-.+.+.....-|++-..-+..
T Consensus 497 -~~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 497 -ELEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred -HhhcccchHHHHHHHHHHHHHHhhcc
Confidence 45677777777666666665444433
No 127
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.25 Score=49.73 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=75.1
Q ss_pred hhhhcCCChHHHHHHHHHHHHH-----------------------hhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHH
Q 014710 280 LALTSCGNHQEVVSTYKMIEKL-----------------------QKKLYHPFSVNLMQTREKLIKILMELEDWKEALAY 336 (420)
Q Consensus 280 ~~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~ 336 (420)
..++..|++++++++|+.+.+- ..+.+...--...+...+.+.+++..|+|.+|++.
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~el 197 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIEL 197 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence 3445566777777777776331 01112222233777889999999999999999999
Q ss_pred HHHhHHHHHHhcCCC-------ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710 337 CQLTIPVYQRVYPQF-------HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 337 ~~~~l~~~~~~~g~~-------hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
.++++.+.++-+-.. --.++....+||-++..+|+.+||...|...+
T Consensus 198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999877665422 13577888899999999999999998776543
No 128
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.38 E-value=0.14 Score=49.73 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=75.0
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
+-.|++++|.+.|+.++. ++....+++.+++-.+-.+|++++|++.+.++-.++ ..-+..++++
T Consensus 501 f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il--------~nn~evl~qi 564 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--------LNNAEVLVQI 564 (840)
T ss_pred eecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--------HhhHHHHHHH
Confidence 345778888888887764 567788899999999999999999999988876665 3446678899
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 398 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~ 398 (420)
|.+|--+.+..+|+++|-+|..+ =|+.|-+.
T Consensus 565 aniye~led~aqaie~~~q~~sl-----ip~dp~il 595 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-----IPNDPAIL 595 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHH
Confidence 99999999999999999887653 35666443
No 129
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.36 E-value=0.51 Score=41.05 Aligned_cols=96 Identities=14% Similarity=0.040 Sum_probs=69.8
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
+..|....+.+++++|+..++..+.. +.+-. ..-+...|+.+..+.|.+++|+...... .++-.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~---------~~~~w 157 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQ------TKDENLKALAALRLARVQLQQKKADAALKTLDTI---------KEESW 157 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHcc------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc---------ccccH
Confidence 45666777888899888887776542 22222 2223466899999999999998865432 34445
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
.+....--|.++...|+.++|+..|.+|+...
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 55556666999999999999999999999876
No 130
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.18 Score=45.12 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=75.2
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
..+.+....+..|+.-|-+++.+ +|.....+.+=+-.+.+..+|+.+..-|++++++ .|..+..
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~vk~ 80 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNLVKA 80 (284)
T ss_pred cccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHHHHH
Confidence 33444455678888888777654 3333444455566788899999999999999887 4889999
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
.+-||...+....+.+|++.|++|+.+++..
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999887754
No 131
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.29 E-value=0.077 Score=49.65 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=49.4
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
+..+...|+.+++.+.++...... |.++.+ +..++.++..+|+.++|+.++++++.. .+.+| ..
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~~-----~p~d~---~~ 250 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAYLQLGRYEEALEYLEKALKL-----NPDDP---LW 250 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHHH-----STT-H---HH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHhccccccccccccccccccc-----ccccc---cc
Confidence 334455677777666666654432 555553 456799999999999999999997654 24444 46
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
+..+|.++...|+.++|..++++++.-++
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HHHHHHHHT--------------------
T ss_pred ccccccccccccccccccccccccccccC
Confidence 67899999999999999999999987664
No 132
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.11 Score=54.94 Aligned_cols=97 Identities=12% Similarity=0.016 Sum_probs=72.3
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 357 (420)
.|..++..|++..+.++.+.++... .+.+...+..+.++..|...|+|++|-.|+.+++..- +++ ...
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l 343 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVL 343 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccc
Confidence 4555677788888887777776542 3445566788899999999999999999998876553 222 455
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
.++.||+.|+..|++++|...+.+.+..+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 67788999999999999888888766543
No 133
>PLN03158 methionine aminopeptidase; Provisional
Probab=95.18 E-value=0.012 Score=57.69 Aligned_cols=39 Identities=26% Similarity=0.706 Sum_probs=30.7
Q ss_pred CCccCccccCCCCCcCCCCCCc-------ccccChhhchhhhhhhHh
Q 014710 26 SISRCDGCFASSNLKKCSACQV-------VWYCGSNCQKLDWKLHRL 65 (420)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~-------~~yCs~~C~~~~~~~H~~ 65 (420)
....|..|.+.-. ..|+.|.. .+|||++|.+.+|+.||.
T Consensus 8 ~~~~c~~c~~~a~-l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~ 53 (396)
T PLN03158 8 SPLACARCSKPAH-LQCPKCLELKLPREGASFCSQDCFKAAWSSHKS 53 (396)
T ss_pred CcccccCCCCccc-ccCccchhcCCCCCCceeECHHHHHHHHHHHHH
Confidence 3566999998743 77888842 689999999999987753
No 134
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.11 Score=51.52 Aligned_cols=107 Identities=25% Similarity=0.249 Sum_probs=81.3
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 357 (420)
.....++.|+|++|+..|..++.+ .|.|+.+.. +=+..|..+|+|++|++-..+..++ .|.-+.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l-----~p~nhvlyS---nrsaa~a~~~~~~~al~da~k~~~l--------~p~w~k 71 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIML-----SPTNHVLYS---NRSAAYASLGSYEKALKDATKTRRL--------NPDWAK 71 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHcc-----CCCccchhc---chHHHHHHHhhHHHHHHHHHHHHhc--------CCchhh
Confidence 345568889999999999888654 344444443 3345788899999999988887665 588899
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 408 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~ 408 (420)
.|..+|-++..+|+|++|+..|.+.++. .|....++.-|+++.
T Consensus 72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 72 GYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhh
Confidence 9999999999999999999999998763 233445555555554
No 135
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.14 E-value=0.14 Score=47.79 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=70.7
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
|....-..+++.|+..+++++.. ++...++-..++++....|+|..|++.. +++...++-.++.+
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~-------e~v~eQn~~yl~ev 251 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEAL-------ERVLEQNPEYLSEV 251 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHH-------HHHHHhChHHHHHH
Confidence 44444455777788887777643 5555666667888888888888877754 45556678888889
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
+..|...|..+|+.++++.+|.++++..
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999999999999999999999987643
No 136
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.26 Score=49.00 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=78.4
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 357 (420)
.+..++..|+|..|+..|.+++.. +|.-..++.+.+-.|..+|.+..|+.-|+..++. +|....
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~k 427 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIK 427 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHH
Confidence 455667889999999999997654 3555667778899999999999999999998877 888888
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
.+..-|.++..+.+|++|++.|++|+..
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999988763
No 137
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.00 E-value=0.15 Score=53.55 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=72.1
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
+-+.+.|+.++..|++.+|+.++-.+... .-....-++..+|..|..+|.+++|++++.++|...
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-------- 479 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-------- 479 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------
Confidence 44456677788889999999888777432 111226678899999999999999999999988764
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
|.-..+...|+.++..+|+.++|.+.+.+
T Consensus 480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 66667888999999999999965544443
No 138
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.89 E-value=0.2 Score=48.48 Aligned_cols=75 Identities=12% Similarity=0.020 Sum_probs=60.4
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
..+.++........++.++...|++++|...+++++... |.-...+..+|.++...|++++|+.+++++++.
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 346667777777788888999999999999999987752 333567888999999999999999999999887
Q ss_pred HHH
Q 014710 386 LRI 388 (420)
Q Consensus 386 ~~~ 388 (420)
...
T Consensus 178 ~~~ 180 (355)
T cd05804 178 WDC 180 (355)
T ss_pred cCC
Confidence 543
No 139
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.25 Score=48.70 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710 271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 350 (420)
Q Consensus 271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 350 (420)
....+-.+...++.+|++++|++.|..++++. |.-+. -+.+.+-.|..+|+|++-++.+.++|++
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epi---FYsNraAcY~~lgd~~~Vied~TkALEl------- 178 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPI---FYSNRAACYESLGDWEKVIEDCTKALEL------- 178 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCch---hhhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence 34444456777888999999999999998875 33222 2457788999999999999999999877
Q ss_pred CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHH
Q 014710 351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELILKLEEAQAE 410 (420)
Q Consensus 351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h-~~~~~~~~~l~~~~~~ 410 (420)
.|....+++.=|+++-.+|++++|+.=+ -++-|+.-.-+... |....++.+.+.-.+.
T Consensus 179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~ 237 (606)
T KOG0547|consen 179 -NPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQAMKKAK 237 (606)
T ss_pred -CcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999987433 23444444333222 2334455555544443
No 140
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=1.7 Score=39.25 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=82.3
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhc---CCCChhHHH-------HHHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY---HPFSVNLMQ-------TREKLIKILMELEDWKEALAYCQLTI 341 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l---~~~h~~~~~-------~~~~L~~~~~~~g~~~~A~~~~~~~l 341 (420)
+..+..+...++..|++.+|..-|+.++...+.+. -|..+..+. ++.+..+.+...|+|-+++++|-.+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45667778888899999999999998877544321 244444333 44566777888899999999998876
Q ss_pred HHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 342 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 342 ~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
.. ||.-..+||.=|+++...-+..||..=+++++++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 54 6778889999999999999999999888888764
No 141
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.70 E-value=0.15 Score=50.14 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=53.8
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
.+.+..+...|++++|+..|++++++ .|++.....++++++.+|..+|++++|++.+++++..
T Consensus 79 ~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 79 VNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455667789999999999999875 4777666677899999999999999999999999987
No 142
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.68 E-value=0.29 Score=46.43 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=83.3
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChh--HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc-CCC-ChHHHHHHH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVN--LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-PQF-HPLLGLQYY 360 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~--~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~-g~~-hp~~~~~l~ 360 (420)
.+.|+++++.|+.+.+.. |.+.-. -+++.-.|+.++..+.|+++|+-+..+++++.+.+- +.+ .......++
T Consensus 135 ls~fq~~Lesfe~A~~~A----~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYA----HNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HHHHHHHHHHHHHHHHHh----hccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 345677888888876653 333333 346778899999999999999999999999987764 544 456788999
Q ss_pred HhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710 361 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 395 (420)
Q Consensus 361 ~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~ 395 (420)
.||..+-.+|..-.|.++-++|.++--. +|..-.
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~-~Gdra~ 244 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQ-HGDRAL 244 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHH-hCChHH
Confidence 9999999999999999999999987655 565443
No 143
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.67 E-value=0.057 Score=54.73 Aligned_cols=85 Identities=20% Similarity=0.206 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
|++++.|++.+++++.+ ++....++.-++.-+....+++.|..+++.+|.+--+.| .++|-||.
T Consensus 434 Qkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYGlG~ 497 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYGLGT 497 (638)
T ss_pred hhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHhhhh
Confidence 56777777777777533 333344444556666667777777777777766543322 46666777
Q ss_pred HHHhhcChHHHHHHHHHHHHH
Q 014710 365 LEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A~~i 385 (420)
+|..+++++.|+.++++|+.|
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred heeccchhhHHHHHHHhhhcC
Confidence 777777777777777666653
No 144
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=94.54 E-value=0.03 Score=50.75 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=34.9
Q ss_pred ccccCCCCcCCceeEE---eC-CEEEEEEecCCCCCCccCCChHhH
Q 014710 183 ISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEGQFDDIQE 224 (420)
Q Consensus 183 ~s~~NHSC~PN~~~~f---~~-~~~~vra~r~I~~Gee~~~~~~~~ 224 (420)
+-++|||=.+|+..-. +| ..+++.|-++|.+|||+.|+|-.|
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 5689999999998764 44 369999999999999999987543
No 145
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.53 E-value=0.22 Score=46.62 Aligned_cols=78 Identities=23% Similarity=0.154 Sum_probs=66.4
Q ss_pred HHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhc-ChHHHHHHHHHHHHHHHH--hcCCCCchHHHHH
Q 014710 325 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI--THGTNSPFMKELI 401 (420)
Q Consensus 325 ~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g-~~~eA~~~l~~A~~i~~~--~~G~~h~~~~~~~ 401 (420)
-..|+++.|..++.|+-.......|..--.++..+|+.|+.....+ ++++|...+++|+++++. ..+..|+...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3569999999999999888776677778899999999999999999 999999999999999876 3457777776654
Q ss_pred H
Q 014710 402 L 402 (420)
Q Consensus 402 ~ 402 (420)
.
T Consensus 84 ~ 84 (278)
T PF08631_consen 84 L 84 (278)
T ss_pred H
Confidence 3
No 146
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.87 Score=44.73 Aligned_cols=112 Identities=17% Similarity=0.051 Sum_probs=85.5
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
.+.++.++|++-|++++..... -..++..||.+|-+.++..+|.+++.+.++.. ..-|.-.|.+-.+..-|
T Consensus 443 ~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fL 513 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFL 513 (559)
T ss_pred HHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHH
Confidence 3446678888888888664211 24567789999999999999999999999988 66788888888888889
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~ 411 (420)
|.-....+++++|..|..+++.- .+...+....+.+++..+
T Consensus 514 A~~f~k~~~~~~As~Ya~~~~~~--------~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 514 AEYFKKMKDFDEASYYATLVLKG--------ETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHhhcchHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHhc
Confidence 99999999999999988877653 334455555555555433
No 147
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.52 E-value=0.4 Score=47.45 Aligned_cols=96 Identities=5% Similarity=-0.025 Sum_probs=70.2
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH---------------H-
Q 014710 281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------Y- 344 (420)
Q Consensus 281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------------~- 344 (420)
....+|++++|+..++++.+ ..|+|+.. +..++.+|...|+|++|++++.++... +
T Consensus 162 l~l~~g~~~~Al~~l~~~~~-----~~P~~~~a---l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLE-----VAPRHPEV---LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHh-----cCCCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34567899999998888855 35777754 455688899999999999665554421 0
Q ss_pred ------------------HHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 345 ------------------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 345 ------------------~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
-.-+|..+|........+|..+...|+.++|.+.++++++
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0123445555666778889999999999999999998876
No 148
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=1.6 Score=39.39 Aligned_cols=104 Identities=11% Similarity=0.062 Sum_probs=68.9
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH-H
Q 014710 280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-Q 358 (420)
Q Consensus 280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~-~ 358 (420)
..++...+|++|..-+.++.+-++.. .+-.+-...+...+-+...+..|.++..+++++..+|-..- +|.++- +
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---spdtAAma 113 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---SPDTAAMA 113 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---CcchHHHH
Confidence 33444567777776666665544321 11223456667777778888999999999999988876543 344433 3
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
+-+-|++ .+..+.++|+.+|++++++++..
T Consensus 114 leKAak~-lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 114 LEKAAKA-LENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHH-hhcCCHHHHHHHHHHHHHHHhcc
Confidence 4444444 46788888999999998888874
No 149
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.50 E-value=0.28 Score=48.54 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH
Q 014710 286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 365 (420)
Q Consensus 286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~ 365 (420)
++.+++++..++.++. +|+++ ..+..++.++...|+|.+|.+++++++.. +|... .+..||.+
T Consensus 308 ~~~~~al~~~e~~lk~-----~P~~~---~l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~~-~~~~La~~ 370 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQ-----HGDTP---LLWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDAY-DYAWLADA 370 (398)
T ss_pred CChHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCHH-HHHHHHHH
Confidence 4455555554444332 34444 34556778888888888888888887665 23322 24468888
Q ss_pred HHhhcChHHHHHHHHHHHHHHH
Q 014710 366 EWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 366 ~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
+..+|+.++|..+|++++....
T Consensus 371 ~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 371 LDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHcCCHHHHHHHHHHHHhhhc
Confidence 8888888888888888877543
No 150
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.44 E-value=0.51 Score=40.93 Aligned_cols=104 Identities=10% Similarity=0.090 Sum_probs=73.7
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 355 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 355 (420)
.+.++-+..-|+.++|++.|.++.... ...-+.+++..+++.+.+..|+|.....+..++-...+. |++-...
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~ 112 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERR 112 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHH
Confidence 345555667799999999998875532 344567888889999999999999999999998887776 3321122
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
...-.--|..++..++|.+|...+-.+...+
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 2222222444556899999998888876544
No 151
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.35 E-value=0.11 Score=32.46 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=33.7
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 393 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 393 (420)
..+..||.+.++.++|++|..=|++|++|.+..+.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999987664
No 152
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.21 E-value=2.1 Score=42.43 Aligned_cols=91 Identities=8% Similarity=-0.083 Sum_probs=40.6
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~ 357 (420)
++......|+++.|.+...+..+. .|. + .-.+...++++...|+++.|.+++.++. +..|.....+
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~-----~~~-~--~~~~llaA~aa~~~g~~~~A~~~l~~a~----~~~p~~~l~~-- 155 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADH-----AAE-P--VLNLIKAAEAAQQRGDEARANQHLEEAA----ELAGNDNILV-- 155 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhc-----CCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCcCchHH--
Confidence 333344456666666665544332 111 1 1112234455555566666666655543 1222222111
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
....+.++...|++++|...+++..
T Consensus 156 -~~~~a~l~l~~~~~~~Al~~l~~l~ 180 (409)
T TIGR00540 156 -EIARTRILLAQNELHAARHGVDKLL 180 (409)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1122555555555555555544443
No 153
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.15 E-value=1.9 Score=35.09 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=74.0
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
+...-+.|+.+.|++.|.+++.+. |. ...++++-++++.-+|+.++|++-..+++++. |+.-...-..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-----P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa 117 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-----PE---RASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQA 117 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-----cc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHH
Confidence 334455689999999999998763 33 35667788999999999999999988887654 5555555566
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
+.+=|.+|-.+|+.+.|..=+..|.++
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 777789999999999999888888764
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.89 E-value=0.37 Score=47.33 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
.++-.+|++++.+.+.. .|.+ ..++...+..+...++++.|++.++++.... |.--..++.||+
T Consensus 213 ~~~E~~AI~ll~~aL~~-----~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~ 276 (395)
T PF09295_consen 213 MNEEVEAIRLLNEALKE-----NPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAE 276 (395)
T ss_pred cCcHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHH
Confidence 34556777777777632 2334 5566677888999999999999999998774 888889999999
Q ss_pred HHHhhcChHHHHHHHH
Q 014710 365 LEWFLGDTENAIKSMT 380 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~ 380 (420)
+|..+|++++|+-.+.
T Consensus 277 ~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 277 CYIQLGDFENALLALN 292 (395)
T ss_pred HHHhcCCHHHHHHHHh
Confidence 9999999999987765
No 155
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.88 E-value=1.4 Score=47.07 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=94.1
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCC--hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
+.+.|.-.+..|++.+|...+..++.....+..+.. ..-+.+.++|+.++-.+++++.|.+.|+.++. .|
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------eh 526 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------EH 526 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HC
Confidence 344555567778999999999998877543333322 23356789999999999999999999988765 48
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 410 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~ 410 (420)
|.+...+..||......++..+|...+.+++.+ ..++|.+..+++.+--..++
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHhhhh
Confidence 999999999997777789999999999999875 34678888877766555443
No 156
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.83 E-value=0.59 Score=49.95 Aligned_cols=90 Identities=16% Similarity=0.017 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH-HHhcC---
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL-RITHG--- 391 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~-~~~~G--- 391 (420)
++..|..++...|+++.|....++++. ..|.-...|..|+.+|...|++++|.+++++..+.= ....|
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~--------~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYG--------MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhC--------CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 345555555555555555555444422 123334467788999999999999999998766532 11111
Q ss_pred --------------CCCchHHHHHHHHHHHHHHHhc
Q 014710 392 --------------TNSPFMKELILKLEEAQAEASY 413 (420)
Q Consensus 392 --------------~~h~~~~~~~~~l~~~~~~~~~ 413 (420)
..||...++..+|.++..+|..
T Consensus 568 i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred EEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3599999999999988887765
No 157
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.80 E-value=2.1 Score=40.58 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc
Q 014710 269 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 348 (420)
Q Consensus 269 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 348 (420)
.++...+...+..+.-.|+...++++...+++++ |+-...+..-+..|...|+...|+.-.+.+-.+
T Consensus 152 ~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL----- 218 (504)
T KOG0624|consen 152 IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL----- 218 (504)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----
Confidence 3444455555556667799999999988887753 444555666678899999999998866654322
Q ss_pred CCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 407 (420)
Q Consensus 349 g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~ 407 (420)
..+ --..+|++++++...|+.+.++...++++. +.|||-...--+.+|..+
T Consensus 219 s~D---nTe~~ykis~L~Y~vgd~~~sL~~iRECLK-----ldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 219 SQD---NTEGHYKISQLLYTVGDAENSLKEIRECLK-----LDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred ccc---chHHHHHHHHHHHhhhhHHHHHHHHHHHHc-----cCcchhhHHHHHHHHHHH
Confidence 222 345789999999999999999998888876 688996544433333333
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.75 E-value=0.29 Score=47.63 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
..+..+...|+|++|++++.+++.. .|.-...++++|.++..+|++++|+..+++|+.+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l 65 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL 65 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456677789999999999999865 3444568899999999999999999999999886
No 159
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.73 E-value=0.52 Score=42.76 Aligned_cols=98 Identities=17% Similarity=0.071 Sum_probs=67.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 307 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 307 ~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
++.+..++. .++...+..|++.+|+...+++... .|.=+..+.-+|-+|..+|++++|..-|.+|+++.
T Consensus 96 ~~~d~~ll~---~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~ 164 (257)
T COG5010 96 YPKDRELLA---AQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA 164 (257)
T ss_pred CcccHHHHH---HHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence 444444443 3777888899999999999987554 35556688889999999999999999999999875
Q ss_pred HHhcC--CCCchHHHHHHHHHHHHHHHhccc
Q 014710 387 RITHG--TNSPFMKELILKLEEAQAEASYKL 415 (420)
Q Consensus 387 ~~~~G--~~h~~~~~~~~~l~~~~~~~~~~~ 415 (420)
-...- .++-....+...++.++..++..+
T Consensus 165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 43311 122222334455566666555443
No 160
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.72 E-value=1.1 Score=37.26 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=57.3
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QF 351 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~ 351 (420)
..+...+......|++++++..+++++.. +|.-=.++..++.+|...|+..+|++++++....+..-+| ..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 33444455567789999999999988764 4444556677899999999999999999999999998888 66
Q ss_pred ChHHHHHHH
Q 014710 352 HPLLGLQYY 360 (420)
Q Consensus 352 hp~~~~~l~ 360 (420)
+|.+-..+.
T Consensus 135 s~~~~~l~~ 143 (146)
T PF03704_consen 135 SPETRALYR 143 (146)
T ss_dssp -HHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666665443
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.69 E-value=0.32 Score=34.87 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=43.4
Q ss_pred hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
+..++++++|++.+++++.. +|. -...+...+.++...|++.+|.+.+.+++..
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALEL-----DPD---DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHh-----Ccc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45678999999999998764 344 4555667899999999999999999998854
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.67 E-value=0.3 Score=49.89 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 393 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 393 (420)
..++..++......|++++|..++++++.+- |. +..+..+|+++...|+.++|+..|.+|+. +.|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-----L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFN-----LRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCC
Confidence 3566667777777899999999999998774 43 57899999999999999999999999976 4555
Q ss_pred Cc
Q 014710 394 SP 395 (420)
Q Consensus 394 h~ 395 (420)
+|
T Consensus 486 ~p 487 (517)
T PRK10153 486 EN 487 (517)
T ss_pred Cc
Confidence 55
No 163
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.66 E-value=0.91 Score=42.90 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=65.2
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
+-+....++.+|+|++|++-|.+... +.|+|+.+.- +-+.+|..+..|..|..-|..++.+-+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~~~---NRA~AYlk~K~FA~AE~DC~~AiaLd~~-------- 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVYHI---NRALAYLKQKSFAQAEEDCEAAIALDKL-------- 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCccchh---hHHHHHHHHHHHHHHHHhHHHHHHhhHH--------
Confidence 44567788999999999999888765 3566665543 3466889999999999989888766432
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
+..+|..=+.+-..+|+..||.+=++.+++
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHh
Confidence 233344444555566666777666666654
No 164
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.61 E-value=0.25 Score=30.87 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
+++..|+.+....++|++|++-++++|.+.+.++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4677899999999999999999999999999999863
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.50 E-value=0.073 Score=39.76 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=39.9
Q ss_pred hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 327 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 327 ~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
.|+|+.|+.++.+++..... .+ -...++.||.++...|++++|..++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 58999999999998877532 23 455777799999999999999999988
No 166
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.37 E-value=4.4 Score=36.90 Aligned_cols=80 Identities=20% Similarity=0.158 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Q 014710 330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRITHGT-NSPFMKELILKLEEA 407 (420)
Q Consensus 330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~~G~-~h~~~~~~~~~l~~~ 407 (420)
.+.|.+.+++++.+.+..+|+.||.+.....+.+..+.+ +|+.++|..+.++|++-.....+. +--.+.+....|.-+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlL 221 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLL 221 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence 467899999999999999999999999999999988765 799999999988888766655441 112245544444444
Q ss_pred HH
Q 014710 408 QA 409 (420)
Q Consensus 408 ~~ 409 (420)
+-
T Consensus 222 rd 223 (236)
T PF00244_consen 222 RD 223 (236)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 167
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.30 E-value=0.23 Score=29.71 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
+++..++.++..+|++++|++.+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 56788999999999999999999999876
No 168
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.12 E-value=1.5 Score=33.51 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=59.8
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 361 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 361 (420)
...|++.+|++.+.+.......-..+.+ .....+..+++.+....|++++|+...++++.+.+.. .+...++..+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~ 86 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSW 86 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH
Confidence 3468999999988888877655444432 2344456778999999999999999999999998776 555666666666
Q ss_pred hhHH
Q 014710 362 CGKL 365 (420)
Q Consensus 362 La~~ 365 (420)
++.+
T Consensus 87 ~~~l 90 (94)
T PF12862_consen 87 LANL 90 (94)
T ss_pred HHHH
Confidence 5554
No 169
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.10 E-value=0.18 Score=32.48 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=30.1
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 398 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~ 398 (420)
.++.||.++..+|++++|+..|+++++. .|+++...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~ 38 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHH
Confidence 5788999999999999999999999873 56666544
No 170
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=93.02 E-value=0.038 Score=44.49 Aligned_cols=39 Identities=33% Similarity=0.825 Sum_probs=32.4
Q ss_pred CccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHh--hchhh
Q 014710 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRL--ECQVL 70 (420)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~--EC~~~ 70 (420)
...|.-|++.....+|+.|.++ |||-.|. +.|+. +|..-
T Consensus 5 t~tC~ic~e~~~KYKCpkC~vP-YCSl~Cf----KiHk~tPq~~~v 45 (157)
T KOG2857|consen 5 TTTCVICLESEIKYKCPKCSVP-YCSLPCF----KIHKSTPQCETV 45 (157)
T ss_pred eeeehhhhcchhhccCCCCCCc-cccchhh----hhccCCcccccc
Confidence 4689999998778999999997 9999997 57776 77543
No 171
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=92.98 E-value=0.77 Score=47.49 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=69.5
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
.++++|+++.+.++..+++ ++....++..++.+..+.+++..|++.+.+.+.. -|.-+..+.+|
T Consensus 496 ~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNl 559 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNL 559 (777)
T ss_pred ccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhh
Confidence 4567888888888777654 6777888999999999999999999998877554 36667899999
Q ss_pred hHHHHhhcChHHHHHHHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~ 384 (420)
+.+|...|+..+|...+++|++
T Consensus 560 s~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 560 STAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred hHHHHHHhhhHHHHHHHHHHhh
Confidence 9999988777777777777765
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.85 E-value=0.26 Score=45.60 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=51.4
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHH
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY 344 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 344 (420)
.+|..+.+.|.++.|++-++.++.+ ++..-+++..|+.+|..+|++++|++.++++|++.
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 4566677788899999988888764 77788899999999999999999999999998763
No 173
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=92.78 E-value=4.8 Score=36.80 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHHh
Q 014710 330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~ 389 (420)
.+.|.+.++.++++...-+|+.||.+....++.+..+.+ +++.++|..+.++|++-....
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ 204 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAE 204 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 457888999999998888999999999999999998886 588999887777766655433
No 174
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.68 E-value=3.2 Score=41.98 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=88.1
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 356 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 356 (420)
.++.-...+|+.++|++.++++...+.. +..-+ .-....++-.+..+++|++|.+++.++++. ..=..+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~---~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~WSka 340 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSE-WKQLH---HLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SKWSKA 340 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHH---HHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cccHHH
Confidence 3445556689999999999987653322 11111 123456777888899999999998877653 222577
Q ss_pred HHHHHhhHHHHhhcCh-------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710 357 LQYYTCGKLEWFLGDT-------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 409 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~-------~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~ 409 (420)
...|-.|..+..+|+. ++|.+++.++-....+.-|..-|.=+=+..++++-..
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~ 400 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEK 400 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHh
Confidence 7888889999999988 8999999999999999888777755545566555443
No 175
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.61 E-value=0.2 Score=29.58 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=25.4
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
+++++|.++..+|++++|+.++++.++-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6899999999999999999999988764
No 176
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.61 E-value=0.3 Score=31.44 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
.++..++.+|...|++++|.+++++++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999998875
No 177
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.43 E-value=0.36 Score=28.67 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHHH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPVY 344 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 344 (420)
.++..++.++...|++++|++++++++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467789999999999999999999998763
No 178
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.23 E-value=3.2 Score=32.75 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=60.6
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh--HH-HHHHHHH-HHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN--LM-QTREKLI-KILMELEDWKEALAYCQLTIPVYQRVYPQFHP 353 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~--~~-~~~~~L~-~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 353 (420)
.|..++.+|++-+|+++.+...... +++.. ++ .....+. .+-....+.+-...|..-+++.+.+-. .-+|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccCh
Confidence 3556677899999999999887654 23322 22 2222222 223334667777788888888776654 3455
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
.-|..+++||+-+--.-.|+++..--++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5587888877765444445555544444443
No 179
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=1.2 Score=43.13 Aligned_cols=87 Identities=9% Similarity=0.100 Sum_probs=64.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 309 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 309 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
.+|..+.+...++.++..-|.+++++.+.++.|..+ +... ....||++......+++|+++|..|+++
T Consensus 433 ~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~~-----LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--- 500 (564)
T KOG1174|consen 433 INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDVN-----LHNHLGDIMRAQNEPQKAMEYYYKALRQ--- 500 (564)
T ss_pred cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----cccH-----HHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence 356777788889999999999999999988877654 3332 5678899999999999999999999874
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHh
Q 014710 389 THGTNSPFMKELILKLEEAQAEAS 412 (420)
Q Consensus 389 ~~G~~h~~~~~~~~~l~~~~~~~~ 412 (420)
.|--+..+.=|..++.++.
T Consensus 501 -----dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 501 -----DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -----CccchHHHHHHHHHHhccC
Confidence 3334444445555555544
No 180
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=92.16 E-value=2.3 Score=40.30 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=79.9
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 356 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 356 (420)
+....++-.|.+.+|+..|..+++. +|....++..-+.+|...|+-+-|+.-+.++|... |...
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--------pDF~ 106 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--------PDFM 106 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--------ccHH
Confidence 3344455567888888888888653 55555666677889999999999998888887764 6666
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 407 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~ 407 (420)
-+..+=|.+++.+|.+++|+.=+.+.++ +.|+...+.+...+|+-+
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALI 152 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhH
Confidence 6777778999999999999887777654 344444566666666554
No 181
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=3.7 Score=37.63 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=42.8
Q ss_pred hHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH-------------HHHHhcCCCCchHHHHHHHH
Q 014710 340 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE-------------ILRITHGTNSPFMKELILKL 404 (420)
Q Consensus 340 ~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~-------------i~~~~~G~~h~~~~~~~~~l 404 (420)
+.-+|+.+-+.. |.+-..+..+|.+++.+|+++||..+++.|+. ++....|++.+.+.+....|
T Consensus 192 AfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 192 AFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 333444444333 33445778889999999999999999999987 44455677765555544443
No 182
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=1.7 Score=39.33 Aligned_cols=104 Identities=11% Similarity=0.012 Sum_probs=72.3
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 355 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 355 (420)
++.|.+..+..+.++|+.+|++.+.+.+. +.....-...+..++.++.....|++|....++...++...-....+-.
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~--~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEE--DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 34555666677889999999999876432 2333445567788889999999999999999998888887765555533
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
+. .-+-.+|+...+|..|+..+++..
T Consensus 192 ~~--va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 192 AY--VAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HH--HHHHHHHhhHHHHHHHHHHhcchh
Confidence 32 222233445667888887777633
No 183
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.00 E-value=0.41 Score=28.53 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHHH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPVY 344 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 344 (420)
+++..++.+|...|++++|..++++++++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567889999999999999999999998864
No 184
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.90 E-value=1.5 Score=42.16 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=56.0
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
.||.+| .+...|+.++...+.|.+|..+++.++..- .-+..+..+|.++..+|+..+|....++++..
T Consensus 323 ~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLR---------PSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 467777 566788999999999999999999776542 22447788999999999999999999999944
Q ss_pred H
Q 014710 386 L 386 (420)
Q Consensus 386 ~ 386 (420)
.
T Consensus 391 ~ 391 (400)
T COG3071 391 T 391 (400)
T ss_pred h
Confidence 3
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=91.71 E-value=1.2 Score=37.74 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=61.9
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
++.-....++..+..+.-+.+.|++++|..+++-+ ..|..+.+. -++.||-.+..++++++|+..|..|..+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L-----~~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFL-----CIYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556777888888888899999999999988754 235555555 3688999999999999999999998887
Q ss_pred HHHhcCC
Q 014710 386 LRITHGT 392 (420)
Q Consensus 386 ~~~~~G~ 392 (420)
-...++|
T Consensus 101 ~~~dp~p 107 (165)
T PRK15331 101 LKNDYRP 107 (165)
T ss_pred ccCCCCc
Confidence 6554444
No 186
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.62 E-value=7.8 Score=33.48 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=43.8
Q ss_pred HHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhc----ChHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Q 014710 332 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG----DTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLE 405 (420)
Q Consensus 332 ~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g----~~~eA~~~l~~A~~i~~~~--~G~~h~~~~~~~~~l~ 405 (420)
++.++.+.++.-++..+ .-+|....+++.||.++..++ +..+|..++.+|.+-++.. .-|+...+...+.+-.
T Consensus 46 es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 46 ESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 34444444444433322 125777889999999988764 4567888888888888865 3466666665544433
No 187
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.45 E-value=2.1 Score=40.89 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 393 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 393 (420)
.-+...++.++...|.+-+|.++|+.+..+. +-.++-+..+..+.-+|.+|-+.|+.+.|..-|++|+.++.- .|..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~kla--l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~-~gdr 282 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLA--LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS-LGDR 282 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHH--HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh-hhhh
Confidence 3455678889999999999999999987764 455888999999999999999999999999999999998865 3544
Q ss_pred C
Q 014710 394 S 394 (420)
Q Consensus 394 h 394 (420)
-
T Consensus 283 m 283 (518)
T KOG1941|consen 283 M 283 (518)
T ss_pred H
Confidence 3
No 188
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=91.40 E-value=0.072 Score=31.35 Aligned_cols=28 Identities=29% Similarity=0.731 Sum_probs=20.3
Q ss_pred ccCccccCCCCCcCCCCCCcccccChhhch
Q 014710 28 SRCDGCFASSNLKKCSACQVVWYCGSNCQK 57 (420)
Q Consensus 28 ~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~ 57 (420)
..|..|.. .....|++|... |||-+|.+
T Consensus 3 ~~C~vC~~-~~kY~Cp~C~~~-~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGN-PAKYRCPRCGAR-YCSLACYK 30 (30)
T ss_dssp EEETSSSS-EESEE-TTT--E-ESSHHHHH
T ss_pred CCCccCcC-CCEEECCCcCCc-eeCcEeEC
Confidence 46788888 668899999996 99999963
No 189
>PRK14574 hmsH outer membrane protein; Provisional
Probab=91.37 E-value=3.4 Score=44.77 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=70.3
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhh---hhc----CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQK---KLY----HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~---~~l----~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
.-.+.+++++++|..+++++..... ..+ ...|+...+....++..+...|++.+|.+..++++...
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a------- 446 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA------- 446 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 3345678899999998888876211 112 25677888888999999999999999999888876543
Q ss_pred ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
|.-......+|.++...|...+|+..++.|..
T Consensus 447 -P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 447 -PANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 33344555777777777777777777755544
No 190
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=91.31 E-value=4.5 Score=38.10 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710 287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 366 (420)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~ 366 (420)
++.+|...|+.+.. .++ ....+++.++.+.+.+|+|++|.+..++++.. .|.-...+.+++.+.
T Consensus 182 ~~~~A~y~f~El~~----~~~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 182 KYQDAFYIFEELSD----KFG----STPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCS 245 (290)
T ss_dssp CCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh----ccC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHH
Confidence 46788888877632 122 23455778899999999999999988876532 244455788999999
Q ss_pred HhhcCh-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710 367 WFLGDT-ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 407 (420)
Q Consensus 367 ~~~g~~-~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~ 407 (420)
..+|+. +.+..++.+.. . ..|+||.+.++..+-+.-
T Consensus 246 ~~~gk~~~~~~~~l~qL~----~-~~p~h~~~~~~~~~~~~F 282 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLK----Q-SNPNHPLVKDLAEKEAEF 282 (290)
T ss_dssp HHTT-TCHHHHHHHHHCH----H-HTTTSHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHH----H-hCCCChHHHHHHHHHHHH
Confidence 999998 55666666533 3 378999998877554443
No 191
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.25 E-value=0.34 Score=45.39 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=13.6
Q ss_pred HHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 360 YTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 360 ~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
.++|...+..++++-++.-+++|+...
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 344444444555555555555555443
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.09 E-value=2.2 Score=35.35 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710 317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 396 (420)
Q Consensus 317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~ 396 (420)
+..-+....+.|+|++|++.++.+. .-| +..|..-.+-+.|+.++...|++++|+..+++=++ +-|.||.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~----~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp~ 82 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALD----TRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHPN 82 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH----hcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCC
Confidence 3455666778899999988777653 333 44555567889999999999999999988877554 4688886
Q ss_pred HHHHHHHH
Q 014710 397 MKELILKL 404 (420)
Q Consensus 397 ~~~~~~~l 404 (420)
+--++.+.
T Consensus 83 vdYa~Y~~ 90 (142)
T PF13512_consen 83 VDYAYYMR 90 (142)
T ss_pred ccHHHHHH
Confidence 65544433
No 193
>PLN03077 Protein ECB2; Provisional
Probab=91.04 E-value=3.8 Score=44.93 Aligned_cols=128 Identities=15% Similarity=0.121 Sum_probs=80.4
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHh-----HHHHHHhcC-----
Q 014710 280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT-----IPVYQRVYP----- 349 (420)
Q Consensus 280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~-----l~~~~~~~g----- 349 (420)
......|.++++.++++...... -+.| -...+..++.++.+.|++++|.++.+++ ..+|..+++
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~--gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKY--SITP----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHh--CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 33445677778877777765322 1112 2355677778888888888887777664 111111111
Q ss_pred --------------CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH-HHHhc-----------------CCCCchH
Q 014710 350 --------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI-LRITH-----------------GTNSPFM 397 (420)
Q Consensus 350 --------------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i-~~~~~-----------------G~~h~~~ 397 (420)
+-.|.-...+..|+.+|...|++++|.++.+.-.+- ++... ...||..
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence 112333345667788999999999999887765542 11111 2469999
Q ss_pred HHHHHHHHHHHHHHhc
Q 014710 398 KELILKLEEAQAEASY 413 (420)
Q Consensus 398 ~~~~~~l~~~~~~~~~ 413 (420)
.++..+|.++..+|+.
T Consensus 751 ~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 751 KEINTVLEGFYEKMKA 766 (857)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998888764
No 194
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.79 E-value=0.52 Score=45.96 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH------HHHHhh-hhcCCC--C-hhHHHHHHHHHHHHHHhhcHHH
Q 014710 263 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKM------IEKLQK-KLYHPF--S-VNLMQTREKLIKILMELEDWKE 332 (420)
Q Consensus 263 ~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~------~~~~~~-~~l~~~--h-~~~~~~~~~L~~~~~~~g~~~~ 332 (420)
+.++.+..++..++++.-..-+.|++.+|++-.+. ++-.++ +.--|. + -.++.++.+|++-|.....+.+
T Consensus 140 ek~kqle~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~e 219 (840)
T KOG2003|consen 140 EKCKQLEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAE 219 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHH
Confidence 34555666666666655445556777777664433 222222 221122 2 2366778888888887777777
Q ss_pred HHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 333 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
|+..++-++. ....|..|..-.++|.+++...++.+|+++|+-|++
T Consensus 220 alntyeiivk------nkmf~nag~lkmnigni~~kkr~fskaikfyrmald 265 (840)
T KOG2003|consen 220 ALNTYEIIVK------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD 265 (840)
T ss_pred Hhhhhhhhhc------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh
Confidence 7766554321 234466666777888888888888888888887765
No 195
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=14 Score=34.44 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHH--------------
Q 014710 274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL-------------- 339 (420)
Q Consensus 274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~-------------- 339 (420)
..+.++......|++.++..++..++... |.+ ..+...++..|...|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~ 207 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA-----PEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQ 207 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC-----ccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHH
Confidence 33455566677888888888888886542 222 44555667777777776554433221
Q ss_pred -hHHHHHHh--cC---------CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH----------------HHHHHhcC
Q 014710 340 -TIPVYQRV--YP---------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV----------------EILRITHG 391 (420)
Q Consensus 340 -~l~~~~~~--~g---------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~----------------~i~~~~~G 391 (420)
-++..++. .| ...|.-...-+.||+.+...|+.++|.+.|-.-+ ++++. +|
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~-~g 286 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA-FG 286 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh-cC
Confidence 12222222 11 1345455677899999999999999988764322 23332 68
Q ss_pred CCCchHHHHHHHHHHH
Q 014710 392 TNSPFMKELILKLEEA 407 (420)
Q Consensus 392 ~~h~~~~~~~~~l~~~ 407 (420)
+.||.+..-..+|..+
T Consensus 287 ~~Dp~~~~~RRkL~sl 302 (304)
T COG3118 287 PADPLVLAYRRKLYSL 302 (304)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8888777766666543
No 196
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.57 E-value=0.42 Score=27.02 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.9
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
..++.+|.++...|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35788999999999999999999999875
No 197
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.54 E-value=0.83 Score=37.12 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=51.9
Q ss_pred HHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 321 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 321 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
+.+....|+++.|++.+.++|.+. |..+..|++=|+++--+|+.++|++=+.+|+.+-
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 446777899999999999998875 8889999999999999999999999999999753
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=5.5 Score=37.08 Aligned_cols=115 Identities=14% Similarity=0.069 Sum_probs=77.7
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh---hcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPLL 355 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 355 (420)
+..++.+|++..|...|.++..+ -|.++.+.-. ++.++..+ .+-.++..++++++.. + |.=
T Consensus 163 g~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~g---~aeaL~~~a~~~~ta~a~~ll~~al~~-------D-~~~ 226 (287)
T COG4235 163 GRAYMALGRASDALLAYRNALRL-----AGDNPEILLG---LAEALYYQAGQQMTAKARALLRQALAL-------D-PAN 226 (287)
T ss_pred HHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHhcCCcccHHHHHHHHHHHhc-------C-Ccc
Confidence 34456778999999999999764 3566655443 34433332 3445666666655443 3 333
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 413 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~ 413 (420)
...++-||..+++.|++.+|...++.-++. .-++.|-..-+...++..+...+.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ie~~ia~~~~~~~~ 280 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLIERSIARALAQRSA 280 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHHHhcccc
Confidence 457888999999999999999888876654 556777777777777776665543
No 199
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.56 E-value=0.69 Score=46.49 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
+...|+.+|.-.|+|++|++.++.+|.+ .|.=...+.+||-++.+-.+.+||+..|++|+++
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 4556777788889999999999988876 4888889999999999999999999999999985
No 200
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.51 E-value=0.83 Score=29.54 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.9
Q ss_pred HHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 360 YTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 360 ~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
+.||++|...|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6899999999999999999998874
No 201
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=89.44 E-value=1.1 Score=44.16 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=66.7
Q ss_pred HHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710 337 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 412 (420)
Q Consensus 337 ~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~ 412 (420)
-.++|.+.++++|+.||.+.+...--|-.|...|+++..++++.-|+.+-+..+.|-+|.+...+.--++.=+-|.
T Consensus 318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL 393 (615)
T KOG0508|consen 318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFML 393 (615)
T ss_pred HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHh
Confidence 3578889999999999999988888888899999999999999999999999999999999887777776655443
No 202
>PLN03218 maturation of RBCL 1; Provisional
Probab=89.39 E-value=4.1 Score=45.50 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=30.1
Q ss_pred hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710 281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 341 (420)
Q Consensus 281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l 341 (420)
.+...|++++|+++|+..... -+.|+ ..+++.|+..|.+.|++++|.+++.++.
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~---Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSK---NVKPD----RVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344557777777776665432 12222 3345566666666666666666655543
No 203
>PLN03218 maturation of RBCL 1; Provisional
Probab=89.34 E-value=5.4 Score=44.63 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHh
Q 014710 316 TREKLIKILMELEDWKEALAYCQLT 340 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~ 340 (420)
+++.++..|.+.|++++|.+++.++
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555555555555555555443
No 204
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=88.81 E-value=0.57 Score=47.51 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHhhhcccccccC-----CCcccccchhhhccccCCCCcCCceeEEe-CCEEEEEEecCCCCCCcc--CCC
Q 014710 149 SINEIAENFSKLACNAHTICNS-----ELRPLGTGLYPVISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAEG--QFD 220 (420)
Q Consensus 149 ~~~~i~~~~~~~~~N~~~i~~~-----~~~~~g~glyp~~s~~NHSC~PN~~~~f~-~~~~~vra~r~I~~Gee~--~~~ 220 (420)
+-....-.+..+...+|.+... .....-.++.|..-+.||+|.+.....+. ++.+.+++.++|.+|||+ +|+
T Consensus 198 ~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG 277 (472)
T KOG1337|consen 198 TFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYG 277 (472)
T ss_pred chHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecC
Confidence 3344455666677777755322 22345578999999999999994443332 458999999999999995 687
Q ss_pred hHhHHHHhc--Cc
Q 014710 221 DIQESAILE--GY 231 (420)
Q Consensus 221 ~~~~~~l~~--~~ 231 (420)
..-...|+. ||
T Consensus 278 ~~~N~eLL~~YGF 290 (472)
T KOG1337|consen 278 PKSNAELLLHYGF 290 (472)
T ss_pred CCchHHHHHhcCC
Confidence 654555543 55
No 205
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.67 E-value=2.5 Score=39.88 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
-|+.+|..+.....|+..+...++.+ |.-...+..+|.++..++++++|.++|+++++
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDSF--------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLK 318 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhcC--------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh
Confidence 34555555555555555554444432 33334444555555555555555555555554
No 206
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.67 E-value=1.6 Score=33.22 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=39.9
Q ss_pred ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH----------------HHHHHhcCCCCchHHHHHHHHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV----------------EILRITHGTNSPFMKELILKLEEA 407 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~----------------~i~~~~~G~~h~~~~~~~~~l~~~ 407 (420)
+|.=....+.||..+...|++++|++.|-+.+ ++++. +|++||.+.....+|..+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~RRkL~~l 88 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYRRKLASL 88 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHHHHHHHH
Confidence 44445788999999999999999998877543 34444 799999999888888754
No 207
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.60 E-value=9.7 Score=34.35 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=57.5
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHH-hhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFHPLLG 356 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 356 (420)
|...+..++.++|+.-+++++.++... .... -.+-+..|+.+|-. +.+++.|+.+++++-+-| -|+.....+
T Consensus 80 A~~cykk~~~~eAv~cL~~aieIyt~~---Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y---k~ees~ssA 153 (288)
T KOG1586|consen 80 AANCYKKVDPEEAVNCLEKAIEIYTDM---GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY---KGEESVSSA 153 (288)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHhh---hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH---cchhhhhhH
Confidence 333444556666766666666654321 1111 11222345555554 377888888877764433 344443333
Q ss_pred -HHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710 357 -LQYYTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 357 -~~l~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
..+.+.|.....+++|++|+..|++..
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888899999998887643
No 208
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=88.56 E-value=2.9 Score=42.87 Aligned_cols=96 Identities=19% Similarity=0.083 Sum_probs=72.3
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710 274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 353 (420)
Q Consensus 274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp 353 (420)
.++.++.+..+.+++...++..+.+++. +|.|..++.+ .+-.+..+|+-++|..+.+..+. ..+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k-----~~eHgeslAm---kGL~L~~lg~~~ea~~~vr~glr--------~d~ 72 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK-----FPEHGESLAM---KGLTLNCLGKKEEAYELVRLGLR--------NDL 72 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh-----CCccchhHHh---ccchhhcccchHHHHHHHHHHhc--------cCc
Confidence 4456666667777777777777777763 4677766553 34556778999999998887765 344
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
.-...+.-+|-++-.-.+|+||++.|+.|+.+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 55567778899999999999999999999986
No 209
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=7.1 Score=38.11 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=79.7
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHH------HhcC-------
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------RVYP------- 349 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~------~~~g------- 349 (420)
...++.++|+=.|+.+..+ -|..++.+.-|...|...|.+++|..++..++..+. .++|
T Consensus 345 ~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC
Confidence 3345556665555555433 356678888899999999999998887776655432 2233
Q ss_pred ---------------CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcc
Q 014710 350 ---------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 414 (420)
Q Consensus 350 ---------------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~~ 414 (420)
.-.|.+.-+-..+|.++..-|.++.++.+|++++.++...- -|....+++....+....|++.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~--LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN--LHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH--HHHHHHHHHHHhhhHHHHHHHH
Confidence 13455555666778888888999999999999998765431 3444555554444444444444
Q ss_pred c
Q 014710 415 L 415 (420)
Q Consensus 415 ~ 415 (420)
+
T Consensus 495 ~ 495 (564)
T KOG1174|consen 495 Y 495 (564)
T ss_pred H
Confidence 3
No 210
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=88.39 E-value=3 Score=41.29 Aligned_cols=107 Identities=17% Similarity=0.067 Sum_probs=67.8
Q ss_pred hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 361 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 361 (420)
....++..+|.+.+++++.+ -|+. .-+..+++++|.+.|+..+|+....+.+.- .|.-...+.-
T Consensus 350 ~~~~nk~~~A~e~~~kal~l-----~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~ 413 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL-----DPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDL 413 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc-----CCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHH
Confidence 34567788888888888764 3444 334567899999999999998877765432 2333445555
Q ss_pred hhHHHHhh-----------------cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710 362 CGKLEWFL-----------------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 408 (420)
Q Consensus 362 La~~~~~~-----------------g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~ 408 (420)
||+.|..+ |++++|...+.+|.+- .|.+.|....+--.+.+.+
T Consensus 414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 414 LAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADARIDQLR 473 (484)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHHH
Confidence 66665555 5555555555555443 4556776665555554443
No 211
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.20 E-value=5 Score=43.57 Aligned_cols=101 Identities=9% Similarity=-0.067 Sum_probs=62.3
Q ss_pred hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH---------hcC--C
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR---------VYP--Q 350 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~---------~~g--~ 350 (420)
....+++++++.+++..++ .+|..+..+..++.++.+.+++.+|... .++++... ++. .
T Consensus 41 ~~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 41 YKSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence 3356788888888876654 2444455555566677776666655544 33222111 110 1
Q ss_pred CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710 351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 397 (420)
Q Consensus 351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~ 397 (420)
+++.--.+++.||..|-.+|+.++|...|++++++= |+++.+
T Consensus 111 ~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~a 152 (906)
T PRK14720 111 LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEI 152 (906)
T ss_pred hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHH
Confidence 233334588888888888899999988888887754 555543
No 212
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=88.18 E-value=1.8 Score=44.26 Aligned_cols=64 Identities=31% Similarity=0.311 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
++.++.-|++.|...|++++|+++..+++.. .|.....+..-|+++-..|++.+|...+.+|..
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5788899999999999999999999988776 477788888889999999999999998876554
No 213
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.90 E-value=4.9 Score=29.44 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=37.5
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH--hcCCCCchHHH-HHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKE-LILKLEEA 407 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~--~~G~~h~~~~~-~~~~l~~~ 407 (420)
.|..+...|.-.-..|++++|..+|.+|++.+.. .+|.-.|...+ +..++.+.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eY 60 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEY 60 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 4556667777777899999999999999999988 55533333333 44555444
No 214
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=87.87 E-value=3.2 Score=45.05 Aligned_cols=64 Identities=13% Similarity=-0.069 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
++..||.+|-.+|++++|.+.++++|..- |.=+.++.++|-.+... ++++|+.++.+|+..+-.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 56677777888888888887777776653 44555777788877777 888888888888776543
No 215
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.57 E-value=1 Score=26.29 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
++..++.++...|++++|++++++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678899999999999999999988764
No 216
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.47 E-value=0.38 Score=29.12 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.9
Q ss_pred ChHHHHHHHHhhHHHHhhcChHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTENAI 376 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~eA~ 376 (420)
+|.-...+++||.++...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5777889999999999999999986
No 217
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.43 E-value=0.81 Score=25.69 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.5
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
...+.||.++..+|+.++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3568899999999999999988763
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.12 E-value=7.8 Score=38.78 Aligned_cols=90 Identities=16% Similarity=0.068 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC----C----------
Q 014710 287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----H---------- 352 (420)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~----h---------- 352 (420)
+.+.-++.-++++++ ++....++.-|+.- ...-..+|.++++++++.-+..+|.. |
T Consensus 183 np~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 183 NPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR 252 (539)
T ss_pred CHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence 444555666666654 34444444333321 12345677777777777777766642 1
Q ss_pred ---hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 353 ---PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 353 ---p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
....++-..||...+++|+.+||++++++-++..
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~ 289 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF 289 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 1124556778999999999999999988766543
No 219
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.07 E-value=4.9 Score=38.35 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=65.6
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHH
Q 014710 280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 359 (420)
Q Consensus 280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l 359 (420)
+.+.+..++.-|+.+++.....- .-.--.+-..++..+..+|+|++|+..+.-+.. .+. .-+...
T Consensus 30 edfls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~-~~~el~ 94 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDD-APAELG 94 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCC-CCcccc
Confidence 33455667778887766554321 111134455688899999999999887665422 111 124456
Q ss_pred HHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 014710 360 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 406 (420)
Q Consensus 360 ~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~ 406 (420)
.+||..++.+|.|.||.....+| ++.|....++..++.
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfhlah 132 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFHLAH 132 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHHHHH
Confidence 78899999999999988776654 455555555544443
No 220
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.00 E-value=6.2 Score=34.18 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 312 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 312 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
.+-..+..++..|.+.||++.|++.+.++.+ |-..--.+....+.+-.+....+++.....++.+|..+++.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-----~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARD-----YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh-----hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 3456678899999999999999999988643 22333456677888888889999999999999999999988
No 221
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=86.91 E-value=6.6 Score=40.57 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
.++.....+.+....+++|..++.++.. .--+...+++-+.+.+.+|+.++|+.++++|++.+-
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~---------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARS---------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhc---------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 3344444455555666666666665533 223445667777777778888888888888877653
No 222
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=86.77 E-value=4.3 Score=38.22 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=54.4
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
...++++.|.+.++..... ..+-.+.++......++...+.+.+|..+++.+.+ .+ +.....++.+
T Consensus 142 L~~~R~dlA~k~l~~~~~~------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~----~~t~~~lng~ 207 (290)
T PF04733_consen 142 LKMNRPDLAEKELKNMQQI------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KF----GSTPKLLNGL 207 (290)
T ss_dssp HHTT-HHHHHHHHHHHHCC------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----cc----CCCHHHHHHH
Confidence 3457778887777665322 23333444333333333333468888887776532 12 3345668899
Q ss_pred hHHHHhhcChHHHHHHHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~ 384 (420)
|.+++.+|+++||...+.+|+.
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 223
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.53 E-value=4.7 Score=37.45 Aligned_cols=74 Identities=23% Similarity=0.203 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 393 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 393 (420)
+.+....+..|...|.+.+|.+++++++.. ||..-.....|-.++..+|+--+|.+.|.+-...+++.+|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 445566778889999999999999998765 777777788888889999999999999999999999999976
Q ss_pred Cc
Q 014710 394 SP 395 (420)
Q Consensus 394 h~ 395 (420)
-.
T Consensus 351 vd 352 (361)
T COG3947 351 VD 352 (361)
T ss_pred cc
Confidence 44
No 224
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.50 E-value=5.1 Score=40.03 Aligned_cols=89 Identities=10% Similarity=-0.050 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCC-----------------hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710 287 NHQEVVSTYKMIEKLQKKLYHPFS-----------------VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349 (420)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~l~~~h-----------------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 349 (420)
...++.++++++++..+..++... ...+.++..|+...-++|+.++|+++.+.++... |
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~----p 290 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF----P 290 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC----C
Confidence 356788888888776554444321 1235567789999999999999999998876543 3
Q ss_pred CCChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
. -......++|...+++++.|.++..++.+
T Consensus 291 ~--~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 291 N--LDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred c--cchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 12445778888889999998888777766
No 225
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=86.26 E-value=3.9 Score=43.26 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=53.2
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
.+.|..++|+.+|+++.. ++-|-.+|..+|.|.+|.+.++. .+-..+-..+++-
T Consensus 811 ieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNTYYNY 864 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------ccceehhhhHHHH
Confidence 444666677777766642 12233457778999999887653 3445566788999
Q ss_pred hHHHHhhcChHHHHHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEA 382 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A 382 (420)
|+-+-+.++.+.|+++|+|+
T Consensus 865 A~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhc
Confidence 99999999999999999974
No 226
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.14 E-value=28 Score=33.91 Aligned_cols=84 Identities=14% Similarity=0.289 Sum_probs=63.1
Q ss_pred cCHHHHHHHHH----HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCC---------------------CChhHH
Q 014710 260 RSKEEIKKIAS----EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---------------------FSVNLM 314 (420)
Q Consensus 260 ~~~~~~~~~~~----~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~---------------------~h~~~~ 314 (420)
.+++.+..+.+ .+.+++..+.....+|+...|.++.++++-..++.+|+ .|-...
T Consensus 24 ~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff 103 (360)
T PF04910_consen 24 HDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF 103 (360)
T ss_pred cCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH
Confidence 35666666665 37888888888888999999999999998776654443 344555
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
.+...-+..+++.|-|..|+++|+-++.+
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsL 132 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSL 132 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 66677777888889999999998876543
No 227
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=86.14 E-value=3.9 Score=40.22 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
.+.++.|+.+++++.+. +|. +...|+.++...++-.+|++...+++ ...|.-+..+...|.
T Consensus 182 t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL--------~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEAL--------KENPQDSELLNLQAE 242 (395)
T ss_pred cccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHH--------HhCCCCHHHHHHHHH
Confidence 35678888888887543 222 23347888888888889999888887 234444888888899
Q ss_pred HHHhhcChHHHHHHHHHHHHHH
Q 014710 365 LEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
.+...++++.|++..++|..+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls 264 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS 264 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 228
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.06 E-value=5.6 Score=35.63 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=57.1
Q ss_pred HhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710 326 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 395 (420)
Q Consensus 326 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~ 395 (420)
....+++|++.+.-++..++ +.+..+-..|..+.++|=++-.+|+.++...++++|+..++..+-.+..
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 34577888888888877764 4456667999999999999999999999999999999999998865543
No 229
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=85.91 E-value=8.7 Score=33.46 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=63.0
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CCChH
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPL 354 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~ 354 (420)
...+....+.|++.+|...|++.++. ++ ..++ .++..++++....|++..|....+++.+. - | .-.|
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG---~f-A~d~---a~lLglA~Aqfa~~~~A~a~~tLe~l~e~---~-pa~r~p- 160 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSG---IF-AHDA---AMLLGLAQAQFAIQEFAAAQQTLEDLMEY---N-PAFRSP- 160 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhcc---cc-CCCH---HHHHHHHHHHHhhccHHHHHHHHHHHhhc---C-CccCCC-
Confidence 34555666778999999998888642 12 2222 23345778888899999888776654221 1 2 1112
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
....-+|.++..+|++.+|+..++.|++-
T Consensus 161 --d~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 161 --DGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred --CchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 23344678888899999999888887763
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.53 E-value=17 Score=37.87 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CCChHHHHHHHHhh
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCG 363 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~~~~~l~~La 363 (420)
-|+|++|.++|-.+- -++-...++..+|||-.-.++++ .--+ .+....-.+..++|
T Consensus 747 ~g~feeaek~yld~d----------------rrDLAielr~klgDwfrV~qL~r-------~g~~d~dD~~~e~A~r~ig 803 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDAD----------------RRDLAIELRKKLGDWFRVYQLIR-------NGGSDDDDEGKEDAFRNIG 803 (1189)
T ss_pred hcchhHhhhhhhccc----------------hhhhhHHHHHhhhhHHHHHHHHH-------ccCCCcchHHHHHHHHHHH
Confidence 366777766654432 12334556677777755544433 2222 34555556677777
Q ss_pred HHHHhhcChHHHHHHHHH------------------HHHHHHHhcCCCCchHHHHHHH
Q 014710 364 KLEWFLGDTENAIKSMTE------------------AVEILRITHGTNSPFMKELILK 403 (420)
Q Consensus 364 ~~~~~~g~~~eA~~~l~~------------------A~~i~~~~~G~~h~~~~~~~~~ 403 (420)
....++..+++|.++|.+ -++.+.+++.++|++.-.+-.+
T Consensus 804 ~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHH
Confidence 777777777777777653 4567778888888866444333
No 231
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=85.51 E-value=13 Score=29.82 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHH--hhcHHHHHHHHHHhHHHHHHhcCCC---Ch-HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710 314 MQTREKLIKILME--LEDWKEALAYCQLTIPVYQRVYPQF---HP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 314 ~~~~~~L~~~~~~--~g~~~~A~~~~~~~l~~~~~~~g~~---hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
..++..|++.-.+ -|.|++|..-|+++.++.+.+=++. |- .=+..+-.|+.++..+|+|++++..-.+|+.-+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 3445555554443 3789999999999999987665432 22 3456777889999999999999999999999998
Q ss_pred HhcCCCCchHHH
Q 014710 388 ITHGTNSPFMKE 399 (420)
Q Consensus 388 ~~~G~~h~~~~~ 399 (420)
+. |+-|..-..
T Consensus 87 RR-GEL~qdeGk 97 (144)
T PF12968_consen 87 RR-GELHQDEGK 97 (144)
T ss_dssp HH---TTSTHHH
T ss_pred hc-cccccccch
Confidence 85 877765543
No 232
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=85.21 E-value=0.72 Score=31.85 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=22.5
Q ss_pred CccCccccCCCCCcCCCCCCcccccChhhchhhhhhhH
Q 014710 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHR 64 (420)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~ 64 (420)
+.+|-.|++..++- -.|||++|++..++.++
T Consensus 3 HkHC~~CG~~Ip~~-------~~fCS~~C~~~~~k~qk 33 (59)
T PF09889_consen 3 HKHCPVCGKPIPPD-------ESFCSPKCREEYRKRQK 33 (59)
T ss_pred CCcCCcCCCcCCcc-------hhhhCHHHHHHHHHHHH
Confidence 57899998886531 25999999998655433
No 233
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.00 E-value=5.2 Score=27.01 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=32.7
Q ss_pred HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 406 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~ 406 (420)
.+|.||..+..+|+|++|..+...++++ -|+++...++...+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHH
Confidence 5788999999999999999999988764 4666666666555543
No 234
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.92 E-value=6.3 Score=29.90 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH---------------HHHhcCCCChHHHHHHHHhhHHH
Q 014710 310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------YQRVYPQFHPLLGLQYYTCGKLE 366 (420)
Q Consensus 310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------------~~~~~g~~hp~~~~~l~~La~~~ 366 (420)
+|.=..++..++..+...|++++|++.+..++.. +=.++|..||.+...-.+|+.++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 4444578888999999999999998866555433 22456888999998888888775
No 235
>PLN03077 Protein ECB2; Provisional
Probab=84.90 E-value=5 Score=44.05 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=61.4
Q ss_pred hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 361 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 361 (420)
+...|+.++|++++++... .-+.|+... +..+..++.+.|++++|.+++..+... +| ..|.. .+|..
T Consensus 564 ~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T----~~~ll~a~~~~g~v~ea~~~f~~M~~~----~g-i~P~~-~~y~~ 630 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVE---SGVNPDEVT----FISLLCACSRSGMVTQGLEYFHSMEEK----YS-ITPNL-KHYAC 630 (857)
T ss_pred HHHcCCHHHHHHHHHHHHH---cCCCCCccc----HHHHHHHHhhcChHHHHHHHHHHHHHH----hC-CCCch-HHHHH
Confidence 3456788888888877653 223444333 445667888899999999988876433 22 23333 57888
Q ss_pred hhHHHHhhcChHHHHHHHHH
Q 014710 362 CGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 362 La~~~~~~g~~~eA~~~l~~ 381 (420)
|..++...|+++||..++++
T Consensus 631 lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 89999999999999998876
No 236
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=84.89 E-value=0.67 Score=47.29 Aligned_cols=39 Identities=31% Similarity=0.315 Sum_probs=31.3
Q ss_pred ccccCCCCcCCceeEE---eC-CEEEEEEecCCCCCCccCCCh
Q 014710 183 ISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEGQFDD 221 (420)
Q Consensus 183 ~s~~NHSC~PN~~~~f---~~-~~~~vra~r~I~~Gee~~~~~ 221 (420)
+=+.|||=.|||..-. .| +++-++|.|.|.+|||++++|
T Consensus 666 ~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDY 708 (739)
T KOG1079|consen 666 IRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDY 708 (739)
T ss_pred hhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeee
Confidence 3467999999997652 23 578899999999999998654
No 237
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.82 E-value=3.9 Score=39.37 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHhhhcccccc----------cCCCcccccchhhhccccCCCCc-CCceeEEeCCEEEEEEecCCCCCC
Q 014710 147 EISINEIAENFSKLACNAHTIC----------NSELRPLGTGLYPVISIINHSCL-PNAVLVFEGRLAVVRAVQHVPKGA 215 (420)
Q Consensus 147 ~~~~~~i~~~~~~~~~N~~~i~----------~~~~~~~g~glyp~~s~~NHSC~-PN~~~~f~~~~~~vra~r~I~~Ge 215 (420)
.++.+..+.+++.+..-+|-|. +.+....|-..-|.+-++||.=. -|+...++++.+.+.|.|+|++|+
T Consensus 173 ~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgd 252 (466)
T KOG1338|consen 173 RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGD 252 (466)
T ss_pred ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcc
Confidence 4677888888888877788653 12245789999999999999877 788888888999999999999999
Q ss_pred ccCCC
Q 014710 216 EGQFD 220 (420)
Q Consensus 216 e~~~~ 220 (420)
|+.-+
T Consensus 253 ev~n~ 257 (466)
T KOG1338|consen 253 EVDNS 257 (466)
T ss_pred ccccc
Confidence 97533
No 238
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.61 E-value=22 Score=32.61 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=56.8
Q ss_pred cCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhh
Q 014710 284 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 363 (420)
Q Consensus 284 ~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 363 (420)
.+|+-.+|++.+...++.. +++ .+++..|+.+|...|+|+.|.-.+++++-+- =+-|..|-.+|..+|.+|
T Consensus 132 a~GK~l~aIk~ln~YL~~F-----~~D---~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKF-----MND---QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HcCCcHHHHHHHHHHHHHh-----cCc---HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHh
Confidence 3566666766555544432 122 4677889999999999999987777664331 111223334444444444
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHH
Q 014710 364 KLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 364 ~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
. ..+++-|.++|.+|+++-.
T Consensus 203 g----~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 203 G----AENLELARKYYERALKLNP 222 (289)
T ss_pred h----HHHHHHHHHHHHHHHHhCh
Confidence 3 4567779999999998754
No 239
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=84.20 E-value=11 Score=39.61 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhh
Q 014710 290 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL 369 (420)
Q Consensus 290 ~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~ 369 (420)
++++.+++++. +.|+|| .+...++--|..+++.+.|+++++++|.+ -|++|+. .+.-||.+.-..
T Consensus 462 kslqale~av~-----~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~---~whLLALvlSa~ 526 (799)
T KOG4162|consen 462 KSLQALEEAVQ-----FDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAK---AWHLLALVLSAQ 526 (799)
T ss_pred HHHHHHHHHHh-----cCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHH---HHHHHHHHHhhh
Confidence 33444444433 467777 55667788888899999999999998765 2555554 566677888889
Q ss_pred cChHHHHHHHHHHHHHHHHhcCC
Q 014710 370 GDTENAIKSMTEAVEILRITHGT 392 (420)
Q Consensus 370 g~~~eA~~~l~~A~~i~~~~~G~ 392 (420)
+++.+|+++..-|++-...-||-
T Consensus 527 kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 527 KRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhh
Confidence 99999999988888765554443
No 240
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=83.99 E-value=9.4 Score=28.19 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=43.6
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc---------hHHHHHHHHHHHHHHHhcc
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP---------FMKELILKLEEAQAEASYK 414 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~---------~~~~~~~~l~~~~~~~~~~ 414 (420)
..|+..-+.|.-+-+.|+.++|+.+|+++++++.....-..| ....+..+|...+.+++++
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~R 75 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTR 75 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666677899999999999999999988765552 2244556666666666654
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.84 E-value=1.4 Score=26.60 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHH
Q 014710 310 SVNLMQTREKLIKILMELEDWKEALA 335 (420)
Q Consensus 310 h~~~~~~~~~L~~~~~~~g~~~~A~~ 335 (420)
+|.-..++.+|+.+|...|++++|++
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 34445678899999999999999863
No 242
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=83.77 E-value=10 Score=40.49 Aligned_cols=58 Identities=14% Similarity=-0.009 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
.+..++++|.+.|++++|.++.+++ +..|. ...+..|..++...|+++.|...+++.+
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 3455556666666666666554332 11222 2245666666666677777766665543
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=83.37 E-value=7.1 Score=38.80 Aligned_cols=68 Identities=9% Similarity=-0.045 Sum_probs=56.1
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
+++.++. ++..++.++...|+++.|...+++++.+ +|..+..++..|.+....|+.++|...+++|++
T Consensus 333 ld~~Da~---a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 333 ITTVDGK---ILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cCCCCHH---HHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4555554 3445677777888899999999998766 699999999999999999999999999999766
No 244
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=82.82 E-value=1.1 Score=24.72 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=18.3
Q ss_pred CCCCCCCcccCCCCCccccCCCCC
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGL 258 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~ 258 (420)
|..|...+.|......|.|++||.
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 567877777666667799999984
No 245
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.72 E-value=5.7 Score=36.20 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH-hhcHHHHHHHHHHhHHHHHH
Q 014710 289 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQR 346 (420)
Q Consensus 289 ~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~~~ 346 (420)
++|.+.|+.+..+....++|.||..+.+..+.+..|.. .|+.++|.++++++++-...
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 46778888888888888999999999999888877655 69999999999998776543
No 246
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=82.68 E-value=0.77 Score=31.93 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=9.5
Q ss_pred cccChhhchhh
Q 014710 49 WYCGSNCQKLD 59 (420)
Q Consensus 49 ~yCs~~C~~~~ 59 (420)
.|||+.|+.-|
T Consensus 26 PFCS~RCk~ID 36 (62)
T PRK00418 26 PFCSKRCQLID 36 (62)
T ss_pred CcccHHHHhhh
Confidence 59999999865
No 247
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.51 E-value=11 Score=27.48 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=40.4
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH--GTNSPFMKELILKLEEAQAEA 411 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~--G~~h~~~~~~~~~l~~~~~~~ 411 (420)
.|..+...|.-+-..|++++|+.+|++|.+.|.... -||++.-.-...++.+....+
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Ra 63 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRI 63 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 455666667777789999999999999999887663 356665444556666554433
No 248
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=82.49 E-value=7.2 Score=40.88 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=62.0
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHH--HHHHhHHHHHHhcCCCChHHHHHHH
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA--YCQLTIPVYQRVYPQFHPLLGLQYY 360 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~--~~~~~l~~~~~~~g~~hp~~~~~l~ 360 (420)
..+|.+.+|.+.|..++. +.|+|+..+. .++.++...|+-..|.. +...++. +-|.+| ..++
T Consensus 695 ~~~~~~~EA~~af~~Al~-----ldP~hv~s~~---Ala~~lle~G~~~la~~~~~L~dalr----~dp~n~----eaW~ 758 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALA-----LDPDHVPSMT---ALAELLLELGSPRLAEKRSLLSDALR----LDPLNH----EAWY 758 (799)
T ss_pred HHHHhhHHHHHHHHHHHh-----cCCCCcHHHH---HHHHHHHHhCCcchHHHHHHHHHHHh----hCCCCH----HHHH
Confidence 345667777777766654 5688877665 56777888886555554 5555433 333333 4899
Q ss_pred HhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 361 TCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 361 ~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
.||.+...+|+.++|.+.|+-|+.+-
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99999999999999999999888754
No 249
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.96 E-value=23 Score=32.38 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
..+...+|..|...|+|++|+++++.+...|++ .++.......+..|...+..+|+.++.+.+.-+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345568999999999999999999999666653 367788888999999999999998886655433
No 250
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=81.93 E-value=5.8 Score=34.49 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 312 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 312 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
.+..-+..|+.....+|++.+|..++++++... | ...+ -.+..+|++++..++..+|...|++-.+--
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~---f-A~d~---a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGI---F-AHDA---AMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c-CCCH---HHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 345566778999999999999999999886531 1 2222 356788999999999999998888765543
No 251
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.74 E-value=0.75 Score=29.06 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=9.0
Q ss_pred ccccChhhchh
Q 014710 48 VWYCGSNCQKL 58 (420)
Q Consensus 48 ~~yCs~~C~~~ 58 (420)
|.|||+.|+..
T Consensus 31 VkYCS~rCR~~ 41 (42)
T PF10013_consen 31 VKYCSDRCRRR 41 (42)
T ss_pred hccHHHHhccC
Confidence 57999999863
No 252
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.59 E-value=46 Score=31.54 Aligned_cols=75 Identities=13% Similarity=-0.019 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC---CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710 311 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP---QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 311 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g---~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
-.+...+..||.+|-.-|+|+.|.+... ....--| .+--..+..+.++|++|++.|+..+|+.+..+|-=.+.
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~----~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a 175 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV----GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA 175 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh----ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 3466788899999999999999976433 3322223 23345566778899999999999999999998865554
Q ss_pred Hh
Q 014710 388 IT 389 (420)
Q Consensus 388 ~~ 389 (420)
..
T Consensus 176 ~~ 177 (399)
T KOG1497|consen 176 ES 177 (399)
T ss_pred cc
Confidence 44
No 253
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.45 E-value=38 Score=30.74 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710 287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 366 (420)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~ 366 (420)
+|+.|-..|.++-..+.+. + +-.+...++-..+..|.. ++..+|+....+++++|-.. +.-..-+.....+|.+|
T Consensus 49 ~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiy 123 (288)
T KOG1586|consen 49 NWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIY 123 (288)
T ss_pred hHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHH
Confidence 4455555555554443332 1 334455555555555544 58899999999999988654 33344566667778887
Q ss_pred Hh-hcChHHHHHHHHHHHHHHHHh
Q 014710 367 WF-LGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 367 ~~-~g~~~eA~~~l~~A~~i~~~~ 389 (420)
-. +-++++|+.+|++|-+-+...
T Consensus 124 Esdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 124 ESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcch
Confidence 64 488999999999998877654
No 254
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=81.42 E-value=14 Score=37.47 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=45.5
Q ss_pred HHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh-cCCCC
Q 014710 331 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNS 394 (420)
Q Consensus 331 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~-~G~~h 394 (420)
..+++++.+++...+.+|+..|.. -|.-+|--+...+++.+|+..+.+|-+++... |+.+.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvY---PYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reD 357 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVY---PYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSRED 357 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SH---HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGG
T ss_pred CCHHHHHHHHHHHHHHHhcCCccc---cceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccH
Confidence 357899999999999999977753 56677888889999999999999998887764 44444
No 255
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.34 E-value=48 Score=32.57 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=66.4
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH--hhcHHHHHHHHHHhHHHHHH--------
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME--LEDWKEALAYCQLTIPVYQR-------- 346 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~--~g~~~~A~~~~~~~l~~~~~-------- 346 (420)
+.|..++..++|..|.+++..+... +++... ++.+..|+..|.. .-++++|.+++++.+.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l 209 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGL 209 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 4455566788999999998888653 444333 5666667666664 45777888777765542111
Q ss_pred ------------hcCC--------C--ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH----hcCCCC
Q 014710 347 ------------VYPQ--------F--HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTNS 394 (420)
Q Consensus 347 ------------~~g~--------~--hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~----~~G~~h 394 (420)
+.+. . .+.+..-++..|.-=...|+|+.|.-.+-+|++++.. .||-+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~t 283 (379)
T PF09670_consen 210 KELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGIDT 283 (379)
T ss_pred HHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1110 0 1222222222233333479999999999998886544 466443
No 256
>PRK01343 zinc-binding protein; Provisional
Probab=81.33 E-value=1.1 Score=30.53 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=10.5
Q ss_pred cccccChhhchhh
Q 014710 47 VVWYCGSNCQKLD 59 (420)
Q Consensus 47 ~~~yCs~~C~~~~ 59 (420)
+..|||+.|+.-|
T Consensus 23 ~rPFCS~RC~~iD 35 (57)
T PRK01343 23 AYPFCSERCRDID 35 (57)
T ss_pred CCcccCHHHhhhh
Confidence 4469999999875
No 257
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.28 E-value=7.3 Score=38.35 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc
Q 014710 318 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 390 (420)
Q Consensus 318 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~ 390 (420)
-.|.+++.-+|||..|++....+---...+|..--+.....+|.+|-+|+.+++|.+|+..+...+--+.++-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677788999999998765544444566655555666889999999999999999999999888777764
No 258
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.52 E-value=1.1 Score=42.51 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=65.3
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
...--.|..+..+|.+++|++.+-.++.+ ++....++.+=+.++..++.+..|+.-|..++.+=
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-------- 178 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-------- 178 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccC--------
Confidence 33344566778889999999988877653 66667777777888999999999998888776652
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
|..+.-|--=+.+...+|++++|...|+.|..
T Consensus 179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred cccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence 22222222223444456777777777776654
No 259
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=80.50 E-value=0.84 Score=44.81 Aligned_cols=71 Identities=7% Similarity=0.136 Sum_probs=60.4
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh
Q 014710 298 IEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF 368 (420)
Q Consensus 298 ~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~ 368 (420)
++-+.+++|||.|+++.....--+-+|...|+++..+++-+-+|++..+.+.+-+|.++..+...|.+...
T Consensus 321 aLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 321 ALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 34566789999999877655555667889999999999999999999999999999999999999887543
No 260
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=80.39 E-value=12 Score=27.48 Aligned_cols=56 Identities=14% Similarity=0.047 Sum_probs=38.4
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH--GTNSPFMKELILKLEEAQAE 410 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~--G~~h~~~~~~~~~l~~~~~~ 410 (420)
.|..+..-|.-.-..|++++|+.+|.+|++.|.... .+|...-..+..++.+....
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~R 62 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDR 62 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 455666667777789999999999999999887743 34444333344555555443
No 261
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.25 E-value=53 Score=35.42 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=71.8
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHH-----HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLM-----QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 352 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~-----~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h 352 (420)
.|....++..+++|..+..++.... ++.+.... ..-.--+.+....|+.+.|.++++.++.. +-+...
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l----~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~---L~~~~~ 493 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFL----KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ---LPEAAY 493 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHh----CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cccccc
Confidence 3444455677788877766665543 33222222 21122234566679999999999987654 233445
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
......+..+|.+.+-.|++++|..+.++|.++.+..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 5666778888999999999999999999999998874
No 262
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=80.23 E-value=0.76 Score=42.44 Aligned_cols=40 Identities=28% Similarity=0.727 Sum_probs=32.0
Q ss_pred CCCCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhch
Q 014710 24 SSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68 (420)
Q Consensus 24 ~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~ 68 (420)
......|.-|..+-.-..||+|... |||-.|-+ .|+..|.
T Consensus 4 ts~~~~C~ic~vq~~~YtCPRCn~~-YCsl~CYr----~h~~~Cs 43 (383)
T KOG4317|consen 4 TSSFLACGICGVQKREYTCPRCNLL-YCSLKCYR----NHKHSCS 43 (383)
T ss_pred CCceeeccccccccccccCCCCCcc-ceeeeeec----CCCccch
Confidence 3456789999988666999999995 99999985 5666684
No 263
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=80.23 E-value=4.7 Score=35.06 Aligned_cols=51 Identities=18% Similarity=-0.056 Sum_probs=43.4
Q ss_pred hcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710 347 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 397 (420)
Q Consensus 347 ~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~ 397 (420)
.-|...|.....+.+|..-|...|+++-|...-+.|+.-+..+.|.+||.+
T Consensus 131 ~~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 131 SQGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp -S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 445789999999999999999999999999999999999999999999964
No 264
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=80.07 E-value=2.1 Score=42.39 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=69.8
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 355 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 355 (420)
-.+|...+....|+.|+.+|.+++.+ +|+.......+ +.++...+++..|+.-+.++++. .|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l-----dpnca~~~anR---a~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL-----DPNCAIYFANR---ALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc-----CCcceeeechh---hhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34566677778999999999999874 45554444333 36788889999998888777655 4888
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
...|+.=|.+.+.++.+.+|...|++...
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 88888888888888888888877776554
No 265
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.99 E-value=16 Score=33.40 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
.|.+++|++.|+.+++. .|.|..+.. ..++ +...+|.-.+|++..-..++. ++.+ ..++.+|+.
T Consensus 99 ~~~~~~A~e~y~~lL~d-----dpt~~v~~K--RKlA-ilka~GK~l~aIk~ln~YL~~----F~~D----~EAW~eLae 162 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLED-----DPTDTVIRK--RKLA-ILKAQGKNLEAIKELNEYLDK----FMND----QEAWHELAE 162 (289)
T ss_pred hhchhhHHHHHHHHhcc-----CcchhHHHH--HHHH-HHHHcCCcHHHHHHHHHHHHH----hcCc----HHHHHHHHH
Confidence 46777888888877653 145544443 2233 334456666777665554443 3333 358899999
Q ss_pred HHHhhcChHHHHHHHHHHH
Q 014710 365 LEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A~ 383 (420)
+|...|++++|.--|++.+
T Consensus 163 iY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHhHhHHHHHHHHHHHHH
Confidence 9999999999998888764
No 266
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.84 E-value=5.7 Score=37.98 Aligned_cols=58 Identities=14% Similarity=0.034 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHH
Q 014710 318 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA 375 (420)
Q Consensus 318 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA 375 (420)
..+++.....++++.|...+..+..+...+||..|-..+..++..|+.++.+++.+.+
T Consensus 45 v~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 45 VQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778999999999999999999999999999999999999999988776653
No 267
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.78 E-value=0.74 Score=45.80 Aligned_cols=43 Identities=26% Similarity=0.608 Sum_probs=31.7
Q ss_pred CCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhhh
Q 014710 26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71 (420)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~ 71 (420)
...-|.+|..+--..- |-...|||-+||+.+|..|+.-|..-.
T Consensus 526 kKQWC~nC~~EAiy~C---CWNTSYCsveCQQ~HW~~H~ksCrrk~ 568 (588)
T KOG3612|consen 526 KKQWCYNCLDEAIYHC---CWNTSYCSVECQQGHWPEHRKSCRRKK 568 (588)
T ss_pred HHHHHHhhhHHHHHHh---hccccccCcchhhccchhHhhhhcccC
Confidence 3556888887732221 334679999999999999999997543
No 268
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=79.45 E-value=20 Score=26.07 Aligned_cols=57 Identities=14% Similarity=0.000 Sum_probs=40.3
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc-CCCCchHHH-HHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKE-LILKLEEAQAE 410 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~-G~~h~~~~~-~~~~l~~~~~~ 410 (420)
..|..+..-|.-.-..|++++|..+|.+|++.+.... ++..|..++ +..++.+....
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~R 62 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSR 62 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 3455666667777789999999999999999888755 555665554 34555555433
No 269
>PLN02789 farnesyltranstransferase
Probab=79.20 E-value=46 Score=31.84 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=49.4
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhh-cHHHHHHHHHHhHHHHHHhcCCC------------
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQF------------ 351 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~~~g~~------------ 351 (420)
.+..++|+.++.+++.+ .|.|+. +...-+.++..+| ++++++..+.+++..-.+-|..+
T Consensus 50 ~e~serAL~lt~~aI~l-----nP~~yt---aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 50 DERSPRALDLTADVIRL-----NPGNYT---VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred CCCCHHHHHHHHHHHHH-----CchhHH---HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc
Confidence 34567788877777654 344443 3333344444455 46677776666654422211111
Q ss_pred ----------------ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 352 ----------------HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 352 ----------------hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
+|.--.++...+-++..+|++++|+.++.+++++
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1222223333344555567777777777777665
No 270
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.10 E-value=3.2 Score=23.21 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQ 338 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~ 338 (420)
+...++.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999998765
No 271
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.59 E-value=73 Score=33.50 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=71.0
Q ss_pred cCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhh
Q 014710 284 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 363 (420)
Q Consensus 284 ~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La 363 (420)
+..+++.|...+++...+.++ +...-..+.+..-++.++.+.+... |+.++.+.+..++. +|..+......+.+..
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~ 147 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQ 147 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 345788898888888777655 3333345666777788888877666 99999999888876 6666666666665554
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHH
Q 014710 364 KLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 364 ~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
..... +++..|...+++....-.
T Consensus 148 l~~~~-~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 148 LALQH-KDYNAALENLQSIAQLAN 170 (608)
T ss_pred HHHhc-ccHHHHHHHHHHHHHHhh
Confidence 44433 888889998888777655
No 272
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=78.55 E-value=0.91 Score=31.08 Aligned_cols=11 Identities=27% Similarity=0.936 Sum_probs=9.3
Q ss_pred cccChhhchhh
Q 014710 49 WYCGSNCQKLD 59 (420)
Q Consensus 49 ~yCs~~C~~~~ 59 (420)
.|||+.|+.-+
T Consensus 22 PFCS~RCk~iD 32 (57)
T PF03884_consen 22 PFCSERCKLID 32 (57)
T ss_dssp SSSSHHHHHHH
T ss_pred CcccHhhcccC
Confidence 49999999865
No 273
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.44 E-value=15 Score=35.20 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=42.3
Q ss_pred hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 361 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 361 (420)
.+..|++++|+..|+.+... +..-.++.-+|+..+..+|.|.+|.....++ +..|.-...+++
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfh 129 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNK--------DDAPAELGVNLACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFH 129 (557)
T ss_pred HHhhccHHHHHHHHHHHhcc--------CCCCcccchhHHHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHH
Confidence 34568888888888776432 2222445567888888899999988876654 444555555555
Q ss_pred hh
Q 014710 362 CG 363 (420)
Q Consensus 362 La 363 (420)
||
T Consensus 130 la 131 (557)
T KOG3785|consen 130 LA 131 (557)
T ss_pred HH
Confidence 43
No 274
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=78.42 E-value=0.97 Score=45.39 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=40.2
Q ss_pred ccccchhhhcc-ccCCCCcCCceeEEe----CCEEEEEEecCCCCCCccCCChHhHH
Q 014710 174 PLGTGLYPVIS-IINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEGQFDDIQES 225 (420)
Q Consensus 174 ~~g~glyp~~s-~~NHSC~PN~~~~f~----~~~~~vra~r~I~~Gee~~~~~~~~~ 225 (420)
.+-.+.+...| +.||||.||+...=. ..++.+.|.+.|+.|+|+++.+....
T Consensus 362 ~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~ 418 (463)
T KOG1081|consen 362 IIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNC 418 (463)
T ss_pred ccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeeccc
Confidence 45566677665 679999999987632 35688999999999999998876543
No 275
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=78.20 E-value=13 Score=26.35 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=38.2
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC-CchHHH-HHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKE-LILKLEEAQA 409 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~-h~~~~~-~~~~l~~~~~ 409 (420)
.|..+.+-|.-.-+.|++++|+.+|.+|++.+......+ .|...+ +..++.+...
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~ 60 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLE 60 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 456667777788889999999999999999988876533 233333 3344444433
No 276
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.00 E-value=4.8 Score=22.16 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
++..++.++...|+++.|...+++++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4667889999999999999999888754
No 277
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=77.55 E-value=25 Score=36.08 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=26.5
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
...+.-+|..+...|++++|..++++|+++-
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 4566777888888999999999999999876
No 278
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=77.42 E-value=13 Score=38.61 Aligned_cols=49 Identities=14% Similarity=-0.026 Sum_probs=29.9
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 339 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 339 (420)
..+++.++|+++++.+++.+ +.....+..+++++-+.++.+.|.+.|..
T Consensus 662 r~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 33556677777776666532 23334555677777777777777665544
No 279
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=77.39 E-value=3.5 Score=23.48 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIP 342 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~ 342 (420)
+++.+.+.|.+.|++++|.+.++++.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467889999999999999999887643
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=77.15 E-value=59 Score=29.78 Aligned_cols=121 Identities=17% Similarity=-0.008 Sum_probs=69.1
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHhHHHHHHhcC
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----EDWKEALAYCQLTIPVYQRVYP 349 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~-----g~~~~A~~~~~~~l~~~~~~~g 349 (420)
++..+-..+..+++++|+....+.+. ++|.|+..--+....+-.+... .|...+.+-....-.+.. -|
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~-----lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~-ry- 146 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIR-----LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ-RY- 146 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH-----hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH-HC-
Confidence 34445556677889999888888865 5799988877776555554432 344444443333323332 23
Q ss_pred CCChHHHHHHHH--------------hhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710 350 QFHPLLGLQYYT--------------CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 407 (420)
Q Consensus 350 ~~hp~~~~~l~~--------------La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~ 407 (420)
|+++.+..+-.+ +|+.|.+.|.+..|..-+++.++-+..+ +.+.+.+..|.++
T Consensus 147 PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t-----~~~~eaL~~l~ea 213 (254)
T COG4105 147 PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT-----SAVREALARLEEA 213 (254)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc-----cchHHHHHHHHHH
Confidence 444444333333 3666777788888877666665543332 3444444444444
No 281
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=76.48 E-value=64 Score=33.16 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=72.4
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHh--HHHHHHhcCCCChHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT--IPVYQRVYPQFHPLLG 356 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~--l~~~~~~~g~~hp~~~ 356 (420)
|..+...|++++|++...+++.. .|.+.+.+..-|.++-..|++.+|.+....+ |+...+.
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy--------- 263 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY--------- 263 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH---------
Confidence 33444568899999888887652 4666788888999999999999999977644 3333332
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 408 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~ 408 (420)
.-.+.++.++..|+.++|+.. +.++.+.-+.......+++.+|=+.+
T Consensus 264 -iNsK~aKy~LRa~~~e~A~~~----~~~Ftr~~~~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 264 -INSKCAKYLLRAGRIEEAEKT----ASLFTREDVDPLSNLNDMQCMWFETE 310 (517)
T ss_pred -HHHHHHHHHHHCCCHHHHHHH----HHhhcCCCCCcccCHHHHHHHHHHHH
Confidence 456678899999999998844 44555543222223444555544443
No 282
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.42 E-value=1.3 Score=30.68 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=9.3
Q ss_pred cccChhhchhh
Q 014710 49 WYCGSNCQKLD 59 (420)
Q Consensus 49 ~yCs~~C~~~~ 59 (420)
.|||+.|+.-+
T Consensus 27 PFCSkRCklID 37 (65)
T COG3024 27 PFCSKRCKLID 37 (65)
T ss_pred cchhHhhhhcc
Confidence 49999999865
No 283
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=76.41 E-value=17 Score=38.76 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=50.6
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH---hcCCCChHHH---------HHHHHhhHHHHhhcChHHH
Q 014710 308 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR---VYPQFHPLLG---------LQYYTCGKLEWFLGDTENA 375 (420)
Q Consensus 308 ~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~---~~g~~hp~~~---------~~l~~La~~~~~~g~~~eA 375 (420)
....++-+++++-+.-+-..+|.+.|++|++++-.-.-. .+-++-|.+- ..+..+|+.+--.|+.+.|
T Consensus 852 ~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 852 KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 355667778888888888889999999999876432111 1111111111 1233346666667888888
Q ss_pred HHHHHHHHHHHH
Q 014710 376 IKSMTEAVEILR 387 (420)
Q Consensus 376 ~~~l~~A~~i~~ 387 (420)
+.+|..|.+-+.
T Consensus 932 l~~Y~~A~D~fs 943 (1416)
T KOG3617|consen 932 LSFYSSAKDYFS 943 (1416)
T ss_pred HHHHHHhhhhhh
Confidence 888887776443
No 284
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=76.29 E-value=22 Score=25.74 Aligned_cols=58 Identities=19% Similarity=0.030 Sum_probs=37.0
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC-chH-HHHHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFM-KELILKLEEAQAEA 411 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h-~~~-~~~~~~l~~~~~~~ 411 (420)
..|..+..-|.-.-..|++++|+.+|.+|++.+......+. |.. ..+..+..+....+
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 34555556666677789999999999999998887653332 222 22334444444433
No 285
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.67 E-value=36 Score=33.46 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=58.0
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
..++|......|+..+|+.-+..++++ ++..+.++..-+..+..+++|++|++.+++++..-.. ...+..
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~ 359 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRT 359 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHH
Confidence 345666777778888999888888765 6777888888999999999999999999998775432 334444
Q ss_pred HHHHHHHh
Q 014710 355 LGLQYYTC 362 (420)
Q Consensus 355 ~~~~l~~L 362 (420)
+..+-..|
T Consensus 360 l~~A~~aL 367 (486)
T KOG0550|consen 360 LREAQLAL 367 (486)
T ss_pred HHHHHHHH
Confidence 44444433
No 286
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=75.64 E-value=72 Score=30.97 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=47.0
Q ss_pred HhhcHHHHHHHHHHhHHHHHHhcCCCChHHH-HHH-HHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 014710 326 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLG-LQY-YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 403 (420)
Q Consensus 326 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~-~~l-~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~ 403 (420)
+....+..+.-.+..+.-++.-.|--.|... ... -.++.+ ..+..+ ++.-++-+...+|++||.+..+...
T Consensus 178 ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L---~~~l~~----~~~~l~~l~~~~~~~~P~v~~l~~~ 250 (362)
T TIGR01010 178 EVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTL---EGELIR----VQAQLAQLRSITPEQNPQVPSLQAR 250 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHhhCCCCCCchHHHHHH
Confidence 3445555566666666777777776666542 111 111111 222222 3333344556788999999998888
Q ss_pred HHHHHHHHhc
Q 014710 404 LEEAQAEASY 413 (420)
Q Consensus 404 l~~~~~~~~~ 413 (420)
++.++..+..
T Consensus 251 i~~l~~~i~~ 260 (362)
T TIGR01010 251 IKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 287
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=75.25 E-value=9 Score=33.31 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=41.3
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710 308 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 355 (420)
Q Consensus 308 ~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~ 355 (420)
-..+..++++.+|..-|...|++.-|+..|+.+|.-..+..|..||.+
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 456778899999999999999999999999999999999999999975
No 288
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.88 E-value=59 Score=28.61 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 307 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 307 ~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
+.+++-.+-+ ..++..+...+++++|+...+.++. ++.+.-.....-.+||.++..+|++++|++.|..
T Consensus 83 ~~t~Ya~laa-L~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 83 GKTIYAVLAA-LELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred cccHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 3344444443 3578888999999999998877643 4677778888999999999999999999887763
No 289
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=74.51 E-value=14 Score=33.82 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-hcHHHHHHHHHHhHHHH
Q 014710 289 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVY 344 (420)
Q Consensus 289 ~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~ 344 (420)
++|.+.|+.+..+..+-+.|.||..+.+..+.+..|... ++.++|.++++++.+-.
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 366778888888877789999999999988888777764 89999999998887754
No 290
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=74.42 E-value=61 Score=33.71 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=71.2
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
..++++|++-|+.++.. .++|-. ++..|+-+-+++|+++.....=.+.+.. -|..-..+..+|.
T Consensus 88 dK~Y~eaiKcy~nAl~~-----~~dN~q---ilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKI-----EKDNLQ---ILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAV 151 (700)
T ss_pred hhhHHHHHHHHHHHHhc-----CCCcHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHH
Confidence 45788999999999764 456644 4556777778888888776654444443 3666667888899
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710 365 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 404 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l 404 (420)
.++..|++..|.+.+++-..... .+++...+.....+|
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHSELLL 189 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHH
Confidence 99999999999988887666655 344444444444443
No 291
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.35 E-value=4 Score=26.38 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710 317 REKLIKILMELEDWKEALAYCQLTI 341 (420)
Q Consensus 317 ~~~L~~~~~~~g~~~~A~~~~~~~l 341 (420)
...||.+|+.+|+.+.|.+..+.++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 4579999999999999999888776
No 292
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=74.14 E-value=1.4 Score=35.83 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=26.8
Q ss_pred CCCccCccccCCCCCcCCCCCCcccccChhhchh
Q 014710 25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKL 58 (420)
Q Consensus 25 ~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~ 58 (420)
..-.+|+-|+ -.+...|.+|+. .|||..|.+-
T Consensus 116 P~r~fCaVCG-~~S~ysC~~CG~-kyCsv~C~~~ 147 (156)
T KOG3362|consen 116 PLRKFCAVCG-YDSKYSCVNCGT-KYCSVRCLKT 147 (156)
T ss_pred CcchhhhhcC-CCchhHHHhcCC-ceeechhhhh
Confidence 3578899999 557889999999 5999999964
No 293
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=73.63 E-value=21 Score=38.91 Aligned_cols=101 Identities=21% Similarity=0.094 Sum_probs=70.4
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhc-HHHHHHHHHHhHHHHHHhcCCC
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-WKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~-~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
.+.++.|.......+++++++..+++++. .|+|+ .+.--|+.++...|. .++|.+++..+..+
T Consensus 3 K~aLK~Ak~al~nk~YeealEqskkvLk~-----dpdNY---nA~vFLGvAl~sl~q~le~A~ehYv~AaKl-------- 66 (1238)
T KOG1127|consen 3 KTALKSAKDALRNKEYEEALEQSKKVLKE-----DPDNY---NAQVFLGVALWSLGQDLEKAAEHYVLAAKL-------- 66 (1238)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhc-----CCCcc---hhhhHHHHHHHhccCCHHHHHHHHHHHHhc--------
Confidence 45566666666778999999999988764 34443 444557777777765 99999988877655
Q ss_pred ChHHHHHHHHhhHHHHh---hcChHHHHHHHHHHHHHHHHh
Q 014710 352 HPLLGLQYYTCGKLEWF---LGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~---~g~~~eA~~~l~~A~~i~~~~ 389 (420)
.|.-..++--|+.+|-. .-.++++.+.|++++.+++.-
T Consensus 67 dpdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q 107 (1238)
T KOG1127|consen 67 DPDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ 107 (1238)
T ss_pred ChhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence 36666677777777654 345667777788777766543
No 294
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=73.62 E-value=1.8 Score=44.81 Aligned_cols=27 Identities=26% Similarity=0.785 Sum_probs=21.1
Q ss_pred CcCCCCCC-------cccccChhhchhhhhhhHh
Q 014710 39 LKKCSACQ-------VVWYCGSNCQKLDWKLHRL 65 (420)
Q Consensus 39 ~~~C~~C~-------~~~yCs~~C~~~~~~~H~~ 65 (420)
...|+.|. ..+|||.+|.+.+|+.||.
T Consensus 74 ~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~ 107 (606)
T PLN03144 74 TLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRV 107 (606)
T ss_pred cccCccchhcCCCcCcceeeCHHHHHHHHHHHHH
Confidence 46777762 2679999999999997754
No 295
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=73.45 E-value=1.5 Score=28.10 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=20.4
Q ss_pred CccCccccCCCCCcCCCCCCcccccChhhchhhhh
Q 014710 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWK 61 (420)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~ 61 (420)
..+|-.|-+.... .-....|||++|+..++.
T Consensus 6 ~~yC~~Cdk~~~~----~~~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 6 NDYCIVCDKQIDP----PDDGSLYCSEECRLKDQE 36 (43)
T ss_pred hhHHHHhhccccC----CCCCccccCHHHHhHhhh
Confidence 4567777666311 234456999999998864
No 296
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.42 E-value=15 Score=34.34 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
..+..+.+.+..+.|.++.|++-++.++.+ |++.|.++ +++|..+...|++..|+++.-+.++
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpllA---YniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPLLA---YNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhh-----cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445567777888889999999999888664 78888877 6889999999999999999877654
No 297
>PRK10941 hypothetical protein; Provisional
Probab=72.86 E-value=39 Score=31.44 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCC
Q 014710 313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 392 (420)
Q Consensus 313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~ 392 (420)
+.+...+|-.+|.+.++|+.|+....+++.+ .+++| .....-|.++..+|.+..|..=|+.-++ .-|
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~-----~~P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF-----DPEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVE-----QCP 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHH-----hCC
Confidence 4577888999999999999999998887654 34444 4556667788888888887765554332 457
Q ss_pred CCchHHHHHHHHHHHHHH
Q 014710 393 NSPFMKELILKLEEAQAE 410 (420)
Q Consensus 393 ~h~~~~~~~~~l~~~~~~ 410 (420)
+.|...-+...+.+++..
T Consensus 247 ~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 247 EDPISEMIRAQIHSIEQK 264 (269)
T ss_pred CchhHHHHHHHHHHHhhc
Confidence 888888888888877654
No 298
>PLN02789 farnesyltranstransferase
Probab=72.82 E-value=45 Score=31.90 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhh
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL 369 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~ 369 (420)
+....+-++...|+|++|++++.++|.. .|.=..+++..+.+....
T Consensus 144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 144 AWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhc
Confidence 3444445555667788888888887665 233345666666666555
No 299
>PF08189 Meleagrin: Meleagrin/Cygnin family; InterPro: IPR012573 This family consists of meleagrin and cygnin basic peptides that are isolated from turkey and black swan respectively. Both peptides are low in molecular weight and contain three disulphide bonds with high concentrations of aromatic residues. These peptides show similarity to transferrins and probably play some vital role in avian eggs but the exact function is still unknown [].
Probab=72.81 E-value=0.9 Score=27.45 Aligned_cols=19 Identities=42% Similarity=1.144 Sum_probs=15.3
Q ss_pred CCcccccChhhchhh-hhhh
Q 014710 45 CQVVWYCGSNCQKLD-WKLH 63 (420)
Q Consensus 45 C~~~~yCs~~C~~~~-~~~H 63 (420)
|..+-|||..|.+.+ |.+|
T Consensus 6 cpkiGYCS~~CsKt~vWa~s 25 (39)
T PF08189_consen 6 CPKIGYCSSKCSKTDVWAFS 25 (39)
T ss_pred Ccccceecccccccceeeec
Confidence 666789999999986 7654
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.43 E-value=56 Score=31.13 Aligned_cols=113 Identities=15% Similarity=0.041 Sum_probs=75.6
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHH-HHHHh----
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP-VYQRV---- 347 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~-~~~~~---- 347 (420)
...++.|...+..|.++.|...+.++... ..+.+.....+...-+.+.-..|+..+|+...+..+. .....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~----~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQL----NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhcc----CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 33445556667788888887766665432 1122222344444556677778888999988887777 33222
Q ss_pred ---------------------cCCCChHHHHHHHHhhHHHHhh------cChHHHHHHHHHHHHHHHHh
Q 014710 348 ---------------------YPQFHPLLGLQYYTCGKLEWFL------GDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 348 ---------------------~g~~hp~~~~~l~~La~~~~~~------g~~~eA~~~l~~A~~i~~~~ 389 (420)
-.......+..++.+|+..... +..+++...|++|..+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 1233567888899999998888 88999999999998875544
No 301
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=71.61 E-value=36 Score=28.70 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=60.9
Q ss_pred hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 361 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 361 (420)
....|+++++...+++++.. .+...............+...+++..|+....+.+...... ....+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ 207 (291)
T COG0457 140 LYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLN 207 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHH
Confidence 34557777787777777331 12112333333444444666778888888877776665333 5566777
Q ss_pred hhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 362 CGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 362 La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
++..+...+++++|...+.+++.....
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 778887788888888888887776654
No 302
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=71.40 E-value=34 Score=24.80 Aligned_cols=55 Identities=20% Similarity=0.110 Sum_probs=36.7
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc-CCCCchHHH-HHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKE-LILKLEEAQA 409 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~-G~~h~~~~~-~~~~l~~~~~ 409 (420)
.|..+..-|.-.-..|++++|..+|.+|++.+.... .+..|.... +..++.+...
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~ 61 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLD 61 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 345555666666778999999999999999988764 223343433 4455555533
No 303
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.09 E-value=41 Score=30.73 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~ 411 (420)
.........+||.-|+..|++++|.++|+.+...+... | =.....+++.+|.++-..+
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-g-W~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE-G-WWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHh
Confidence 67788888999999999999999999999996555543 1 2235566777777765443
No 304
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.95 E-value=64 Score=30.18 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=12.7
Q ss_pred HhhhhcCCChHHHHHHHHHHHHH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKL 301 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~ 301 (420)
|.......++++|+..|++++..
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~k 32 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGK 32 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcC
Confidence 33334445666677666666543
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.90 E-value=11 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
.+.-+|..+.++|+|++|..++..+|.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3566888899999999999999998776
No 306
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.57 E-value=70 Score=32.18 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=57.4
Q ss_pred HhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710 326 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 396 (420)
Q Consensus 326 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~ 396 (420)
..+++.||....++.|++... -+....+|-.+.-||.+..-.|+..|++...+-|++..+..+ |||.
T Consensus 457 ~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~--Di~v 523 (629)
T KOG2300|consen 457 KQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP--DIPV 523 (629)
T ss_pred HhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC--CchH
Confidence 468999999999999998733 256788888999999999999999999999999999998875 7774
No 307
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=70.48 E-value=79 Score=31.25 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=78.0
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhh--cC----CCChhHHH----HHHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--YH----PFSVNLMQ----TREKLIKILMELEDWKEALAYCQLTI 341 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~--l~----~~h~~~~~----~~~~L~~~~~~~g~~~~A~~~~~~~l 341 (420)
++..+++|+..+.+++|..|.-.|+.++++..+. ++ |..-++.. +...|.-.|..+++.+.|+.+..+.+
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 4455677888888888888888888888877643 22 22222222 23567788999999999999988875
Q ss_pred HHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 014710 342 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 406 (420)
Q Consensus 342 ~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~ 406 (420)
.. +|.+=.-.+.-|-..-.+.+|.||..-.--|.-++-..=|.++.... +..++.+
T Consensus 256 ~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~-lIklyWq 311 (569)
T PF15015_consen 256 NL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISK-LIKLYWQ 311 (569)
T ss_pred hc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHH-HHHHHHH
Confidence 43 23333333344455556788888877666665555554444444333 4433333
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.06 E-value=47 Score=31.05 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 393 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~ 393 (420)
+.++..++..+..-|+++.+....++++.. ||..=..+..|=.+|...|+...|+..|++....+....|.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 556777888888889999998888877654 677777788888899999999999999999999999999999
Q ss_pred CchHHH
Q 014710 394 SPFMKE 399 (420)
Q Consensus 394 h~~~~~ 399 (420)
......
T Consensus 225 P~~~~~ 230 (280)
T COG3629 225 PAPELR 230 (280)
T ss_pred ccHHHH
Confidence 875544
No 309
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.98 E-value=7.8 Score=22.44 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTI 341 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l 341 (420)
+++.+...|.+.|++++|.+++.++.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46778899999999999999998764
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.91 E-value=43 Score=31.39 Aligned_cols=72 Identities=18% Similarity=0.090 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
+..+...+......|.+.+|+++.+++++. |+..-....-|+..+...||--.|.+++.+.-...++-+|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 344455666778889999999999998753 555556667788888999999999999999999999999854
No 311
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.72 E-value=35 Score=32.05 Aligned_cols=65 Identities=14% Similarity=-0.021 Sum_probs=50.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHH
Q 014710 307 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 379 (420)
Q Consensus 307 ~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l 379 (420)
|..++.....+..|+..|...++|..|.+.+.++ +..||..+..-+--|+.+...+.+..|+..+
T Consensus 37 ~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL--------~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 37 LERSPRSRAGLSLLGYCYYRLQEFALAAECYEQL--------GQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4556666667788999999999999999988765 5668888877777788888888877765443
No 312
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=69.55 E-value=41 Score=24.50 Aligned_cols=56 Identities=21% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc-CCCCchHHH-HHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKE-LILKLEEAQA 409 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~-G~~h~~~~~-~~~~l~~~~~ 409 (420)
..|..+...|.-.-..|++++|..+|.++++.+.... ++..|..++ +..++.+...
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~ 61 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLK 61 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4456666677777778999999999999999988854 565665555 3355555533
No 313
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=69.21 E-value=58 Score=35.72 Aligned_cols=106 Identities=17% Similarity=0.091 Sum_probs=78.5
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 356 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 356 (420)
.....+...|.+..|++.+.++. .+.|.|. -.+...+......|++++|+..+...+.......+ .-...|
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs-----~LrP~s~---y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~-~q~gLa 671 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKAS-----LLRPLSK---YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT-GQNGLA 671 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhH-----hcCcHhH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hhhhHH
Confidence 34445566788888888877763 3444443 34555666777889999999998888776655443 345678
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcC
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G 391 (420)
..+..+++.+.-.|=+..|.+++++++.++....-
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999998887753
No 314
>PF12854 PPR_1: PPR repeat
Probab=69.04 E-value=8 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHh
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLT 340 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~ 340 (420)
-+++.|...|.+.|++++|.++..++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 46778999999999999999987753
No 315
>PRK11906 transcriptional regulator; Provisional
Probab=68.12 E-value=37 Score=33.91 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh---------hcHHHHHHHHHHhHHHHHHhcCCCChHHHHHH
Q 014710 289 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---------EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 359 (420)
Q Consensus 289 ~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~---------g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l 359 (420)
+.|+.++.++++.+ +.+|....++-.++..+... .+..+|+++.++++++ .|.=+.++
T Consensus 275 ~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da~a~ 341 (458)
T PRK11906 275 YRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDGKIL 341 (458)
T ss_pred HHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCHHHH
Confidence 35566666665432 44666666666666555442 2344556666555443 23445688
Q ss_pred HHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710 360 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 397 (420)
Q Consensus 360 ~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~ 397 (420)
..+|.+++..|+++.|...+++|+. +.|+....
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~-----L~Pn~A~~ 374 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKI-----HSTDIASL 374 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhh-----cCCccHHH
Confidence 8999999999999999999999975 45555544
No 316
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=67.92 E-value=1.1e+02 Score=29.43 Aligned_cols=100 Identities=15% Similarity=0.054 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710 287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 366 (420)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~ 366 (420)
....-++++..++.-..+- ..-.....+--.|+.+|...++|.+|+.....++.-++++-- -+........=+++|
T Consensus 103 ~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDD--K~lLvev~llESK~y 178 (411)
T KOG1463|consen 103 GTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDD--KILLVEVHLLESKAY 178 (411)
T ss_pred CcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc--ccceeeehhhhhHHH
Confidence 3445566666665533210 011122334466889999999999999999999988888743 334444444557888
Q ss_pred HhhcChHHHHHHHHHHHHHHHHhc
Q 014710 367 WFLGDTENAIKSMTEAVEILRITH 390 (420)
Q Consensus 367 ~~~g~~~eA~~~l~~A~~i~~~~~ 390 (420)
+++.+..+|...|.-|...-...|
T Consensus 179 ~~l~Nl~KakasLTsART~AnaiY 202 (411)
T KOG1463|consen 179 HALRNLPKAKASLTSARTTANAIY 202 (411)
T ss_pred HHHhcchhHHHHHHHHHHhhcccc
Confidence 888888888877777766554444
No 317
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=67.46 E-value=3.2 Score=26.16 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=14.7
Q ss_pred cCCCCCCCcccC----CCCCccccCCCCCc
Q 014710 234 KDDGCSGFLLRD----SDDKGFTCQQCGLV 259 (420)
Q Consensus 234 ~c~~C~~~~~~~----~~~~~~~C~~C~~~ 259 (420)
.|.+|.+.+.|- .+...|.|..|+..
T Consensus 4 rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 33 (40)
T PF04810_consen 4 RCRRCRAYLNPFCQFDDGGKTWICNFCGTK 33 (40)
T ss_dssp B-TTT--BS-TTSEEETTTTEEEETTT--E
T ss_pred ccCCCCCEECCcceEcCCCCEEECcCCCCc
Confidence 367999877653 34568999999874
No 318
>PF13041 PPR_2: PPR repeat family
Probab=67.24 E-value=10 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTI 341 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l 341 (420)
-+++.+...+.+.|++++|.++++++.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357889999999999999999998875
No 319
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=67.11 E-value=8.7 Score=35.49 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=37.5
Q ss_pred HHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 333 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
|..||.++..+. |..|..+++||.++...|+.-+|.-+|-||+.
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 677888887775 99999999999999999999999999998874
No 320
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.47 E-value=85 Score=30.73 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
+....+.|......+.+.+|+..+.+++.. .|+|+ .++..=++++..+|+++.|...+++++.+ .|.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----~~~N~---KALyRrG~A~l~~~e~~~A~~df~ka~k~----~P~N 324 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLEL-----DPNNV---KALYRRGQALLALGEYDLARDDFQKALKL----EPSN 324 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----CCCch---hHHHHHHHHHHhhccHHHHHHHHHHHHHh----CCCc
Confidence 344455666666777888999988888775 34453 45556788999999999999999998655 4444
Q ss_pred ChHHHHHHHHhhHHHHhhcChHH-HHHHHHHHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTEN-AIKSMTEAVEI 385 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~e-A~~~l~~A~~i 385 (420)
..+...+-.|.+- ...+++ ..++|.+.+.-
T Consensus 325 -ka~~~el~~l~~k---~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 325 -KAARAELIKLKQK---IREYEEKEKKMYANMFAK 355 (397)
T ss_pred -HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhc
Confidence 4444444444333 222222 24455554443
No 321
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.78 E-value=65 Score=29.85 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=38.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710 320 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 320 L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
.+.++....++.+|...+.+. +...|......++-|..++++|+..+|++.++.++.+.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i--------~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEI--------LRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhc--------cccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334444444555554433332 234555566667778888889999999999888877653
No 322
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=65.71 E-value=60 Score=36.94 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
.++..|..+|...+.+++|.++++.++.-+ + +.-..+..+|..++.+.+-++|..++.+|+..+-.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF----~----q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKF----G----QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHh----c----chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 345566777777777777777777665433 2 33446667788888888889999999999987766
No 323
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=65.71 E-value=4.5 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=19.5
Q ss_pred CCCCCCCcccCCCCCccccCCCCCccC
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGLVRS 261 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~~~~ 261 (420)
|+.|...+..++....+.|+.||....
T Consensus 6 C~~CG~~~~~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 6 CARCGREVELDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred CCCCCCEEEECCCCCceECCCCCCeEE
Confidence 468988765555555899999997543
No 324
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=65.50 E-value=44 Score=34.80 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHHHh--hhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 285 CGNHQEVVSTYKMIEKLQ--KKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~--~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
.+++++|.+.+..++..- ....|++++.+ ...+.++..+..+.-..+. +-.+.+.-.+...-..|..+..|
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~ql---w~elcdlis~~p~~~~sln----vdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQL---WLELCDLISQNPDKVQSLN----VDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhH---HHHHHHHHHhCcchhcccC----HHHHHHhhcccCcHHHHHHHHHH
Confidence 456777777777765531 12234444332 3334444444433333222 22244555667788999999999
Q ss_pred hHHHHhhcChHHHHHHHHHHHHHHH
Q 014710 363 GKLEWFLGDTENAIKSMTEAVEILR 387 (420)
Q Consensus 363 a~~~~~~g~~~eA~~~l~~A~~i~~ 387 (420)
|+-|...|.++.|.+.|++|++-..
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~ 279 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVM 279 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhe
Confidence 9999999999999999999987443
No 325
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=65.25 E-value=49 Score=23.81 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=35.5
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC-CchHHH-HHHHHHHHHHH
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKE-LILKLEEAQAE 410 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~-h~~~~~-~~~~l~~~~~~ 410 (420)
|..+.+-|.-.-..|++++|+.+|.+|++.+......+ .|..+. +..++.+....
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~R 62 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDR 62 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 44455556666678999999999999999888765333 233322 34555544433
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.82 E-value=61 Score=33.48 Aligned_cols=87 Identities=9% Similarity=-0.011 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC----CCChHHHHHHHHh---------hH-HHHhhcChHHHHHHHHHH
Q 014710 317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYP----QFHPLLGLQYYTC---------GK-LEWFLGDTENAIKSMTEA 382 (420)
Q Consensus 317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g----~~hp~~~~~l~~L---------a~-~~~~~g~~~eA~~~l~~A 382 (420)
+..|+++....|++..|.+...++.+.-..++- ++++.+. .+-.+ |- .++..|++++++++|.+.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~-~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLA-VLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHH-HHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 467888888889999999888877665433332 2333221 22222 11 245579999999999887
Q ss_pred -----HHHHHHhcCCCCchHHHHHHHHHH
Q 014710 383 -----VEILRITHGTNSPFMKELILKLEE 406 (420)
Q Consensus 383 -----~~i~~~~~G~~h~~~~~~~~~l~~ 406 (420)
.+.+.++|+|+ .+.+++.++.+
T Consensus 748 ~r~peAal~ArtYlps--~vs~iv~~wk~ 774 (794)
T KOG0276|consen 748 QRLPEAALFARTYLPS--QVSRIVELWKE 774 (794)
T ss_pred CcCcHHHHHHhhhChH--HHHHHHHHHHH
Confidence 55777888883 45555554443
No 327
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=64.62 E-value=75 Score=25.71 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=53.8
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCC-----hhHHH--HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-----VNLMQ--TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 350 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h-----~~~~~--~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~ 350 (420)
.|+..+..+++-.++-.|++++.+.+++.-.+. ..++. ..++||+.+...||-+-.++|.+-+-+-+-.+.|.
T Consensus 7 lAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQ 86 (140)
T PF10952_consen 7 LADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQ 86 (140)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccC
Confidence 345556677888888899999888776632222 22333 34899999999999999999999887777666663
No 328
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=64.39 E-value=26 Score=34.06 Aligned_cols=68 Identities=22% Similarity=0.172 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhHHH-----HHHhcC------------------CCChHHHHHHHHhhHHHHhhcChH
Q 014710 317 REKLIKILMELEDWKEALAYCQLTIPV-----YQRVYP------------------QFHPLLGLQYYTCGKLEWFLGDTE 373 (420)
Q Consensus 317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~-----~~~~~g------------------~~hp~~~~~l~~La~~~~~~g~~~ 373 (420)
...++.-+...|+.++|.++.+..|+- ....+| ..||.-...++.||.++...+.+.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 345666777888998888877776652 122222 157777789999999999999999
Q ss_pred HHHHHHHHHHH
Q 014710 374 NAIKSMTEAVE 384 (420)
Q Consensus 374 eA~~~l~~A~~ 384 (420)
+|.++++.|++
T Consensus 346 kA~~~leaAl~ 356 (400)
T COG3071 346 KASEALEAALK 356 (400)
T ss_pred HHHHHHHHHHh
Confidence 99999997765
No 329
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=64.27 E-value=30 Score=32.31 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhh---cChHHHHHHHHHHHH
Q 014710 310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL---GDTENAIKSMTEAVE 384 (420)
Q Consensus 310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~---g~~~eA~~~l~~A~~ 384 (420)
||.=.+-+..|+.+|...|++..|..-|.+++.+. +++|.+ +.-+|.++... -...++..++++|+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNPEI---LLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCHHH---HHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 44445667789999999999999999999887663 555554 44555555544 234556666666654
No 330
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.15 E-value=25 Score=35.59 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=52.4
Q ss_pred HHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcC-hHHHHHHHHHHHHH
Q 014710 320 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD-TENAIKSMTEAVEI 385 (420)
Q Consensus 320 L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~-~~eA~~~l~~A~~i 385 (420)
++.++..+|+-..|..+++..++- +...-.++-.+-.++|+||.+++.+|. ..+|..+|.+|.+-
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 455677789988898888877665 344446777778899999999999988 99999999999764
No 331
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=64.10 E-value=14 Score=21.35 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhHH
Q 014710 315 QTREKLIKILMELEDWKEALAYCQLTIP 342 (420)
Q Consensus 315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 342 (420)
.+++.++.++.+.|+++.|.+++..+..
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3577889999999999999988877643
No 332
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.96 E-value=38 Score=24.96 Aligned_cols=59 Identities=8% Similarity=-0.120 Sum_probs=40.7
Q ss_pred HhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 326 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 326 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
+..+..+|+..-+++|.-. .+.+..=.++--|..++.+.|++++++.+..+-+++.+..
T Consensus 18 ~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred ccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345555655555554433 3455666677778899999999999999988877776543
No 333
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.63 E-value=32 Score=30.42 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=44.6
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 343 (420)
.+|..++..+.++.|++-+.+++.+ +|...+++..-+.+|-+...|++|++-+++++..
T Consensus 139 Nraaa~iKl~k~e~aI~dcsKaiel--------~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 139 NRAAALIKLRKWESAIEDCSKAIEL--------NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHhhhHHHHHHHHHhhHhc--------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4566667778889999888888764 3344455556678899999999999999988765
No 334
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.51 E-value=1.1e+02 Score=31.00 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=68.9
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L 362 (420)
+.++++++|...+.+.++... --..+..+...+--|+.+....|+..++..+-+-++....++ +++|...+...-+
T Consensus 456 f~qn~lnEaK~~l~e~Lkman--aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~ 531 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMAN--AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSIL 531 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHH
Confidence 456788888777777766531 112233444555667788888899999999988888888877 6889999888889
Q ss_pred hHHHHhhcC--hHHHHHHHHH
Q 014710 363 GKLEWFLGD--TENAIKSMTE 381 (420)
Q Consensus 363 a~~~~~~g~--~~eA~~~l~~ 381 (420)
.+++...|+ .++..+.+++
T Consensus 532 ~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 532 TDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHhCcchhhHHHHHHHH
Confidence 999998888 5555554443
No 335
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=61.00 E-value=4.9 Score=23.82 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=15.4
Q ss_pred CCCCCCCcccCCCCCccccCCCCCc
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGLV 259 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~~ 259 (420)
|++|.++..+......-.|+.|+..
T Consensus 6 C~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 6 CGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp -TTT--BEEE-SSSS-EEESSSS-E
T ss_pred cCcCCccccCCCCcCEeECCCCcCE
Confidence 6799988877777677789999853
No 336
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.28 E-value=64 Score=23.52 Aligned_cols=35 Identities=34% Similarity=0.114 Sum_probs=28.2
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
.|..+.+-|.-.-+.|++++|..+|..|++.+...
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e 39 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINT 39 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh
Confidence 34455555666668899999999999999999885
No 337
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=59.76 E-value=16 Score=38.34 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=43.3
Q ss_pred hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710 327 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 397 (420)
Q Consensus 327 ~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~ 397 (420)
.++|.++.++.+..+.+. |..-..+|.+|-+.+.+++++.|.+.|++++ +.-|+|-..
T Consensus 498 ~~~fs~~~~hle~sl~~n--------plq~~~wf~~G~~ALqlek~q~av~aF~rcv-----tL~Pd~~ea 555 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN--------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV-----TLEPDNAEA 555 (777)
T ss_pred chhHHHHHHHHHHHhhcC--------ccchhHHHhccHHHHHHhhhHHHHHHHHHHh-----hcCCCchhh
Confidence 467777777777666653 5666688899999999999999999998765 456666533
No 338
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=59.20 E-value=7.2 Score=24.62 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=23.7
Q ss_pred cCCCCCCCcccCC--CCCccccCCCCC-ccCHHHHHHHHH
Q 014710 234 KDDGCSGFLLRDS--DDKGFTCQQCGL-VRSKEEIKKIAS 270 (420)
Q Consensus 234 ~c~~C~~~~~~~~--~~~~~~C~~C~~-~~~~~~~~~~~~ 270 (420)
.|++|...+.+.. +.....|+.|+. ..+..++.++.+
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G~W~d~~el~~~~e 40 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGGIWFDAGELEKLLE 40 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCeEEccHHHHHHHHh
Confidence 4789987654332 223467999975 567777776543
No 339
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.20 E-value=72 Score=31.10 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=35.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710 309 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349 (420)
Q Consensus 309 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g 349 (420)
.||+-+.++..++.++..+|+.+.|.++.+++|-++++.+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~ 75 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH 75 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788999999999999999999999999997654
No 340
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.13 E-value=1.4e+02 Score=30.31 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=32.1
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
-..+..+++||.++.-+|++++|...+.+|..++..
T Consensus 616 ~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs 651 (696)
T KOG2471|consen 616 EARGVLFANLAAALALQGHHDQAKSLLTHAATLLHS 651 (696)
T ss_pred HHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhc
Confidence 456788999999999999999999999999988773
No 341
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=58.64 E-value=60 Score=30.89 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhhhcC--CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhc
Q 014710 293 STYKMIEKLQKKLYH--PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG 370 (420)
Q Consensus 293 ~~~~~~~~~~~~~l~--~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g 370 (420)
..++.++..++.++. ......+.+...++.+....|.+..|..+..++.. ..+..+.......+.-+++++..|
T Consensus 123 ~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~----~~~~~~~~~~~v~~e~akllw~~g 198 (352)
T PF02259_consen 123 SVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQ----LNPSSESLLPRVFLEYAKLLWAQG 198 (352)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc----cCCcccCCCcchHHHHHHHHHHcC
Confidence 445566666555544 23455667788899999999999999887766432 222333335556677899999999
Q ss_pred ChHHHHHHHHHHHH-HHHH
Q 014710 371 DTENAIKSMTEAVE-ILRI 388 (420)
Q Consensus 371 ~~~eA~~~l~~A~~-i~~~ 388 (420)
+..+|+..+++.+. .+..
T Consensus 199 ~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 199 EQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred CHHHHHHHHHHHHHHHhhh
Confidence 99999999988887 4443
No 342
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.41 E-value=1.6e+02 Score=27.42 Aligned_cols=65 Identities=22% Similarity=0.062 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710 317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
...|+.+.++.||.+.|..|++++-..-.++-+.. .-.....+.+.++.-..++.+|-..+.+..
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q--~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ--GKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccc--hhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 34566777777777777777776544333333221 122334444444445555656555554443
No 343
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=58.37 E-value=52 Score=33.32 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
..++++...|+.++|++.+.+++..... .+ ..-...++++|-.+..+.++++|..++.+-.+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~---Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSE-WK---QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhh-HH---hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 3566788889999999999988753322 22 23357799999999999999999988876554
No 344
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=58.33 E-value=1.3e+02 Score=26.43 Aligned_cols=142 Identities=17% Similarity=0.042 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhh---hcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 014710 263 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK---LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 339 (420)
Q Consensus 263 ~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~---~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 339 (420)
+++.++..++-.+.+.+.....+|++++|..-++++.....+ .+ ..+|.++.+ +.+--.++.|.+|..++.-
T Consensus 20 EE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l-~~~pel~~a----g~~~~a~QEyvEA~~l~~~ 94 (204)
T COG2178 20 EEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLL-AGFPELYFA----GFVTTALQEYVEATLLYSI 94 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHH----HhhcchHHHHHHHHHHHHH
Confidence 456666677777777777788899999998887777554322 22 122332221 1122234566666554332
Q ss_pred hHHHHHHhcCCCChH-----HHHHHHHhhHH----------HHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH--HHHH
Q 014710 340 TIPVYQRVYPQFHPL-----LGLQYYTCGKL----------EWFLGDTENAIKSMTEAVEILRITHGTNSPFMK--ELIL 402 (420)
Q Consensus 340 ~l~~~~~~~g~~hp~-----~~~~l~~La~~----------~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~--~~~~ 402 (420)
.-+. - -.+|. ....+.-+|.+ ....|++++|..++.=--++++....-+-|... .+..
T Consensus 95 l~~~---~--~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~ 169 (204)
T COG2178 95 LKDG---R--LPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPKALVPGLRQ 169 (204)
T ss_pred HhcC---C--CCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence 2111 1 11222 11122333333 334689999998888777777776665666544 4778
Q ss_pred HHHHHHHHHhcc
Q 014710 403 KLEEAQAEASYK 414 (420)
Q Consensus 403 ~l~~~~~~~~~~ 414 (420)
++..+|.-++..
T Consensus 170 K~Dvar~~lekt 181 (204)
T COG2178 170 KQDVARSLLEKT 181 (204)
T ss_pred HHHHHHHHHHHH
Confidence 888887766544
No 345
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.32 E-value=70 Score=23.36 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhh
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 304 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~ 304 (420)
.-.+...|......|++++|+..|+..+.....
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344556677777889999999999999887655
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=58.21 E-value=32 Score=32.91 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH
Q 014710 319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 365 (420)
Q Consensus 319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~ 365 (420)
.-+.-|..+|.|++|++.|.+.+.++- .-|-.|..+|.+|+++-+.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~F 147 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSF 147 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHH
Confidence 345678899999999999998877641 1224577888888887443
No 347
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.07 E-value=1.1e+02 Score=31.97 Aligned_cols=104 Identities=14% Similarity=0.012 Sum_probs=70.5
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~ 354 (420)
++..|.+.+...++..+++.|+.-+..... ...+-.....-.+|.-.|..++.++.|+++.+.+-. +- |.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~----~d----~~ 426 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE----VD----RQ 426 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----hc----cc
Confidence 456666666666788888888776554311 112334467778899999999999999998887633 32 22
Q ss_pred HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
.-..-+.+.++...-|+-++|+..+.....++..
T Consensus 427 ~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 427 SPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 3334444556666788889999888887777655
No 348
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=57.35 E-value=1.2e+02 Score=25.74 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=38.3
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 340 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 340 (420)
+++.+......++.+++..++..+ ++|.|.++.+ ..--+.+++..|+|.+|+.+++.+
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~AL-----rvLRP~~~e~---~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDAL-----RVLRPEFPEL---DLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHH-----HHhCCCchHH---HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444556777777776665 5566766543 233455788889999999988775
No 349
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=56.85 E-value=1.2e+02 Score=28.36 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-C
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-Q 350 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~ 350 (420)
+..+.+.+..+...|+++.+++.+++++.. ||.-=..+..++..|...|+...|+..|+++-.....-+| .
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 455556666677778888888888877653 4555566778899999999999999999999887777777 4
Q ss_pred CChHHHHHHHH
Q 014710 351 FHPLLGLQYYT 361 (420)
Q Consensus 351 ~hp~~~~~l~~ 361 (420)
..|.+...+-+
T Consensus 225 P~~~~~~~y~~ 235 (280)
T COG3629 225 PAPELRALYEE 235 (280)
T ss_pred ccHHHHHHHHH
Confidence 44444433333
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.50 E-value=24 Score=35.39 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHh--cC-CCChHHHHHHHHhhHH----------HHhhcChHHHHHHHHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQRV--YP-QFHPLLGLQYYTCGKL----------EWFLGDTENAIKSMTEA 382 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~--~g-~~hp~~~~~l~~La~~----------~~~~g~~~eA~~~l~~A 382 (420)
.+..|+.+....|+++-|.+.++++-+.-... |- ..+......+.++|.. ++.+|+.++...+|.++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 67889999999999999999998876653332 21 2222222222222221 23357777877777776
Q ss_pred -----HHHHHHhcCC
Q 014710 383 -----VEILRITHGT 392 (420)
Q Consensus 383 -----~~i~~~~~G~ 392 (420)
..++.++|||
T Consensus 429 ~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 429 GRLPEAALFARTYGP 443 (443)
T ss_dssp T-HHHHHHHHHHTT-
T ss_pred CCchHHHHHHHhcCC
Confidence 4466666665
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.31 E-value=3e+02 Score=30.02 Aligned_cols=106 Identities=14% Similarity=0.066 Sum_probs=70.0
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 361 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 361 (420)
.-+|+++.+.++.+.++.. +++.. ...+-....++.+..-.|++++|+.+.+++....++. ..+| .-......
T Consensus 469 l~~~~~e~a~~lar~al~~----L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-~~~~-l~~~~~~~ 542 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQ----LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-DVYH-LALWSLLQ 542 (894)
T ss_pred HhcCCHHHHHHHHHHHHHh----cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-ccHH-HHHHHHHH
Confidence 4467888888877777643 33433 3355667888899999999999999999988877544 3333 33445666
Q ss_pred hhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710 362 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 396 (420)
Q Consensus 362 La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~ 396 (420)
-+.++.++| +-|..-..++.......+++.-|.
T Consensus 543 ~s~il~~qG--q~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 543 QSEILEAQG--QVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred HHHHHHHhh--HHHHHHHHHHHHHHHHHHhhhccc
Confidence 688888888 333333445555555555555544
No 352
>PRK11519 tyrosine kinase; Provisional
Probab=55.78 E-value=2.7e+02 Score=29.98 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710 380 TEAVEILRITHGTNSPFMKELILKLEEAQAEAS 412 (420)
Q Consensus 380 ~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~ 412 (420)
+.-.+-+...||++||.+..+...++.++.++.
T Consensus 324 ~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~ 356 (719)
T PRK11519 324 TFKEAEISKLYTKEHPAYRTLLEKRKALEDEKA 356 (719)
T ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHH
Confidence 333445566799999999887776666655443
No 353
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=55.41 E-value=6 Score=36.69 Aligned_cols=34 Identities=24% Similarity=0.726 Sum_probs=24.0
Q ss_pred ccccCCCCCcCCCCCC-----cccccChhhchhhhhhhHh
Q 014710 31 DGCFASSNLKKCSACQ-----VVWYCGSNCQKLDWKLHRL 65 (420)
Q Consensus 31 ~~C~~~~~~~~C~~C~-----~~~yCs~~C~~~~~~~H~~ 65 (420)
..|.+... ..|+.|- ..+||+.+|.+..|..|+.
T Consensus 12 ~~c~~~a~-l~Cp~c~~~~i~~~~fc~q~cf~~~w~~hK~ 50 (369)
T KOG2738|consen 12 LQCGSEAS-LQCPTCLKLGIKSAYFCAQECFKNSWLSHKK 50 (369)
T ss_pred cccCChhh-ccCchhhhcCCCcccccCchhhhcchhhhhh
Confidence 45666533 5666662 2579999999999987764
No 354
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.22 E-value=1.2e+02 Score=25.07 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH-HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcC
Q 014710 313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391 (420)
Q Consensus 313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G 391 (420)
..++..+++-++....+-.+ -++-+.+++.+|...||.. -..+|-||..+..+++|++|+.|...-++ .-
T Consensus 31 s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~-----~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE-----TE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh-----hC
Confidence 34455566666665443322 2445666777777666654 45677889999999999999999886654 34
Q ss_pred CCCchHHHHHHHHHHH
Q 014710 392 TNSPFMKELILKLEEA 407 (420)
Q Consensus 392 ~~h~~~~~~~~~l~~~ 407 (420)
|+.+....+...+.+.
T Consensus 102 ~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 102 PNNRQALELKETIEDK 117 (149)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 6677777666665543
No 355
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=55.07 E-value=1.2e+02 Score=25.21 Aligned_cols=61 Identities=26% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 323 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
++...|+++.|...+.+++. ..+. ....+..+..++..+...+++++|...+.+++.....
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 139 ALYELGDYEEALELYEKALE----LDPE-LNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh----cCCC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 45555566666555555421 1110 2234444444455555556666666666666555544
No 356
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.93 E-value=31 Score=33.74 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=42.3
Q ss_pred HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh--cCCC------CchH---HHHHHHHHHHHHHHhcc
Q 014710 356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTN------SPFM---KELILKLEEAQAEASYK 414 (420)
Q Consensus 356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~--~G~~------h~~~---~~~~~~l~~~~~~~~~~ 414 (420)
|+...++|..+-++++.++|+.+|++++..+..- .|.. .+.. ..+..+|.+.+.+++++
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~R 91 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHR 91 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888889999999999999999988871 1211 2233 34566777777766664
No 357
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.68 E-value=2e+02 Score=27.60 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcC
Q 014710 292 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 371 (420)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~ 371 (420)
+++|..++...+.-. || +.+..-+..+.-+.+|.++|+++..++..-....--+ -.+.+.....|.++.+.|+
T Consensus 58 l~lY~NFvsefe~kI---Np--lslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~D 130 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKI---NP--LSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEIND 130 (380)
T ss_pred HHHHHHHHHHHhhcc---Ch--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhccc
Confidence 556666555433222 22 3333334445556679999999999988876554323 3567777888899999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCC
Q 014710 372 TENAIKSMTEAVEILRITHGTNS 394 (420)
Q Consensus 372 ~~eA~~~l~~A~~i~~~~~G~~h 394 (420)
.+++.+.+.+...++....|-..
T Consensus 131 Lk~~kk~ldd~~~~ld~~~~v~~ 153 (380)
T KOG2908|consen 131 LKEIKKLLDDLKSMLDSLDGVTS 153 (380)
T ss_pred HHHHHHHHHHHHHHHhcccCCCh
Confidence 99999999999998887766554
No 358
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.43 E-value=34 Score=34.39 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=68.8
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHH--HHHHHHHHHHHhhcHHHHHHHHHHhHH-HHHHhcCCCC-------
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ--TREKLIKILMELEDWKEALAYCQLTIP-VYQRVYPQFH------- 352 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~--~~~~L~~~~~~~g~~~~A~~~~~~~l~-~~~~~~g~~h------- 352 (420)
+..|++..|.+++-..-.- ...-+.--+.+.. ..++|+.+..+.|.|..+..+++++|. ....+--+..
T Consensus 251 Y~~gn~~kA~KlL~~sni~-~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIH-KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHhcchHHHHHHHHhcccc-cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3357777776654333111 1111111222222 237888899999999999999999996 3222211211
Q ss_pred --hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 353 --PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 353 --p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
-..-..+|+.|.+++..|+..+|..-+.+|+.++.+
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 123457899999999999999999999999998876
No 359
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.43 E-value=1.2e+02 Score=29.08 Aligned_cols=59 Identities=14% Similarity=0.016 Sum_probs=35.8
Q ss_pred HHHHhhcHHHHHHHHHHhHHHHHHhcCCC---ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 323 ILMELEDWKEALAYCQLTIPVYQRVYPQF---HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~l~~~~~~~g~~---hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
++...|+...... ..++++|.+ -|-..+..-.+|.-+.+.|-|++|++..++|++|-+.
T Consensus 146 a~fy~G~~~~~k~-------ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~ 207 (491)
T KOG2610|consen 146 AHFYNGNQIGKKN-------AIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF 207 (491)
T ss_pred HHHhccchhhhhh-------HHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc
Confidence 4455555544433 455566643 3334555555666667778888888888887776544
No 360
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.20 E-value=44 Score=28.88 Aligned_cols=72 Identities=13% Similarity=0.013 Sum_probs=50.5
Q ss_pred hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 361 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 361 (420)
++..|.|++ +....+.+-++.++....++..|+-+-.+.|++..|..++.++.. ...-|..-..++..+..
T Consensus 142 LvD~gsy~d-------V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~--Da~aprnirqRAq~mld 212 (221)
T COG4649 142 LVDNGSYDD-------VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN--DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HhccccHHH-------HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc--cccCcHHHHHHHHHHHH
Confidence 445566544 334445667899999999999999999999999999999987755 33344444455544444
Q ss_pred h
Q 014710 362 C 362 (420)
Q Consensus 362 L 362 (420)
|
T Consensus 213 l 213 (221)
T COG4649 213 L 213 (221)
T ss_pred H
Confidence 3
No 361
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.01 E-value=1e+02 Score=28.70 Aligned_cols=83 Identities=12% Similarity=0.044 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh----hHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC----GKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L----a~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
+.+-..|+.+|...|+|..--+..+++-.....--|.+....|.++.++ -+.|-++.+-.+-..+|++|+.|-...
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 3344556677777788887777777777777788889999999888877 344556677777778889998887776
Q ss_pred cCCCCchHHH
Q 014710 390 HGTNSPFMKE 399 (420)
Q Consensus 390 ~G~~h~~~~~ 399 (420)
-||..-.
T Consensus 225 ---PHPlImG 231 (440)
T KOG1464|consen 225 ---PHPLIMG 231 (440)
T ss_pred ---CchHHHh
Confidence 5776543
No 362
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.48 E-value=78 Score=31.39 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=30.9
Q ss_pred CCCChHHHHHHH---HhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 349 PQFHPLLGLQYY---TCGKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 349 g~~hp~~~~~l~---~La~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
|+.+|.++..+. --|.+.+++|+.++|..+|+.|..-+..
T Consensus 257 g~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 257 GGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 567788775542 2288888999999999999999886654
No 363
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.46 E-value=1.9e+02 Score=26.88 Aligned_cols=85 Identities=15% Similarity=0.026 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc
Q 014710 311 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 390 (420)
Q Consensus 311 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~ 390 (420)
+.+-.+.+..+.+.+.+|+|++|....+.+|+-. +..-..+-++-.+....|...++..-+-.- + +..
T Consensus 204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q---L-k~~ 271 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLALHLGKDAEVTERNLSQ---L-KLS 271 (299)
T ss_pred CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCChHHHHHHHHH---H-Hhc
Confidence 3345566678889999999999999988877653 222445666666666788876653322221 2 235
Q ss_pred CCCCchHHHHHHHHHHH
Q 014710 391 GTNSPFMKELILKLEEA 407 (420)
Q Consensus 391 G~~h~~~~~~~~~l~~~ 407 (420)
-|+||++.++-.+=++-
T Consensus 272 ~p~h~~vk~~~ekeaeF 288 (299)
T KOG3081|consen 272 HPEHPFVKHLNEKEAEF 288 (299)
T ss_pred CCcchHHHHHHHHHHHH
Confidence 68999998877655544
No 364
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.25 E-value=89 Score=23.03 Aligned_cols=59 Identities=12% Similarity=-0.009 Sum_probs=36.5
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHH
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 342 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 342 (420)
-..++.|....+.|..++|+..|++.+....+.+.-..+ .......|+.|..+-+++..
T Consensus 9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 9 FEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHH
Confidence 344556666677799999999999998766554332222 12233456666666655543
No 365
>PRK00420 hypothetical protein; Validated
Probab=53.12 E-value=55 Score=25.94 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=20.7
Q ss_pred cccCCCCCCCcccCCCCCccccCCCCCccC
Q 014710 232 RCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 261 (420)
Q Consensus 232 ~C~c~~C~~~~~~~~~~~~~~C~~C~~~~~ 261 (420)
.=.|+.|..++.... .....|+.||....
T Consensus 23 ~~~CP~Cg~pLf~lk-~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 23 SKHCPVCGLPLFELK-DGEVVCPVHGKVYI 51 (112)
T ss_pred cCCCCCCCCcceecC-CCceECCCCCCeee
Confidence 456789998877643 33567999998543
No 366
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=53.04 E-value=2.3e+02 Score=27.77 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=63.7
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH--hhcHHHHHHHHHHhH---------------
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME--LEDWKEALAYCQLTI--------------- 341 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~--~g~~~~A~~~~~~~l--------------- 341 (420)
+..++.+++|..|..++..+.. +.+.+........+..|...|.. .-++++|.++..+.+
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~---r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~ 213 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLR---RLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDEL 213 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHh---cccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHH
Confidence 3445667899999988888864 34555566666777777777764 457778888777222
Q ss_pred ----HHHHHhcC------------CCChHHHHHHHHh--hHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710 342 ----PVYQRVYP------------QFHPLLGLQYYTC--GKLEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 342 ----~~~~~~~g------------~~hp~~~~~l~~L--a~~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
.....+.| ..+|.+.....-+ |..-...|+|+.|.-.+-++++++..
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 214 EDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred HHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 11111222 1233322211112 22222579999999999998886543
No 367
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=52.08 E-value=11 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.740 Sum_probs=18.0
Q ss_pred CCCCCCCcccCCCC--CccccCCCCCc
Q 014710 235 DDGCSGFLLRDSDD--KGFTCQQCGLV 259 (420)
Q Consensus 235 c~~C~~~~~~~~~~--~~~~C~~C~~~ 259 (420)
|+.|...+.+.... ..|.|+.|+..
T Consensus 3 Cp~Cg~~l~~~~~~~~~~~vC~~Cg~~ 29 (52)
T smart00661 3 CPKCGNMLIPKEGKEKRRFVCRKCGYE 29 (52)
T ss_pred CCCCCCccccccCCCCCEEECCcCCCe
Confidence 68898877665432 36899999964
No 368
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.59 E-value=1.9e+02 Score=28.54 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=55.9
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC--CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710 306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ--FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~--~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~ 383 (420)
|..+..-..-+.+.|.+.|...+.|+.|...-. +..||. .+-.-|..+|-+|++-.-+++|+.|.+++.+|+
T Consensus 201 Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvs------K~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~ 274 (493)
T KOG2581|consen 201 LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVS------KSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQAL 274 (493)
T ss_pred hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhh------cccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHH
Confidence 444444445556778888888899988877533 457774 344788899999999999999999999999887
Q ss_pred H
Q 014710 384 E 384 (420)
Q Consensus 384 ~ 384 (420)
.
T Consensus 275 r 275 (493)
T KOG2581|consen 275 R 275 (493)
T ss_pred H
Confidence 6
No 369
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=51.29 E-value=2.2e+02 Score=27.96 Aligned_cols=103 Identities=7% Similarity=-0.045 Sum_probs=57.1
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh---hcChHH
Q 014710 298 IEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF---LGDTEN 374 (420)
Q Consensus 298 ~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~---~g~~~e 374 (420)
.+...++-+.........+..++.-.|...++|+.=+++...+ +.+-...-+.....-+..|.++.. .|+.++
T Consensus 125 ~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l----~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~ 200 (374)
T PF13281_consen 125 ELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETL----EALPTCDVANQHNIKFQYAFALNRRNKPGDREK 200 (374)
T ss_pred HHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHh----hccCccchhcchHHHHHHHHHHhhcccCCCHHH
Confidence 3333344444444445566677777899999998766654433 111111122333345666777777 788888
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710 375 AIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411 (420)
Q Consensus 375 A~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~ 411 (420)
|+..+..++ .++.+..-+++..+..+..++
T Consensus 201 Al~il~~~l-------~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 201 ALQILLPVL-------ESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred HHHHHHHHH-------hccCCCChHHHHHHHHHHHHH
Confidence 887777662 223333334555555554443
No 370
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.26 E-value=87 Score=30.96 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=48.6
Q ss_pred hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc
Q 014710 283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 348 (420)
Q Consensus 283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 348 (420)
.--||+..|++.++.+.--...++..--.-.+.+.+.++-+|..+++|.+|+..+..+|.-..+.-
T Consensus 133 ~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 133 CLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346899999888777644333444433444566788899999999999999999998887665543
No 371
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.24 E-value=1.3e+02 Score=31.26 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710 318 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 397 (420)
Q Consensus 318 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~ 397 (420)
-+|+++.+..|...+|-.+..+.|.+. |.+ | ...+-+|..++.+.+.+.|+..+++|++ ..++.|..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~---~se--p---l~~~~~g~~~l~l~~i~~a~~~~~~a~~-----~~~~~~~~ 712 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN---SSE--P---LTFLSLGNAYLALKNISGALEAFRQALK-----LTTKCPEC 712 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc---ccC--c---hHHHhcchhHHHHhhhHHHHHHHHHHHh-----cCCCChhh
Confidence 457788888888888888888877765 332 2 2446677888889999999999999987 45677777
Q ss_pred HHHHHHHH
Q 014710 398 KELILKLE 405 (420)
Q Consensus 398 ~~~~~~l~ 405 (420)
.+-+.+++
T Consensus 713 ~~~l~~i~ 720 (886)
T KOG4507|consen 713 ENSLKLIR 720 (886)
T ss_pred HHHHHHHH
Confidence 77665554
No 372
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.58 E-value=1.3e+02 Score=26.24 Aligned_cols=56 Identities=16% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhh----cHHHHHHHHHHhHHHHHH
Q 014710 290 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE----DWKEALAYCQLTIPVYQR 346 (420)
Q Consensus 290 ~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g----~~~~A~~~~~~~l~~~~~ 346 (420)
++.++++.++.+.+..+ .-+|...+++.+++.+|...+ +..+|..+++++.+-+++
T Consensus 46 es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 46 ESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 44455555555443321 114445556666777666653 445566666666555443
No 373
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=50.46 E-value=10 Score=23.72 Aligned_cols=23 Identities=30% Similarity=0.777 Sum_probs=17.6
Q ss_pred CccccCCCC--CcCCCCCCcccccCh
Q 014710 30 CDGCFASSN--LKKCSACQVVWYCGS 53 (420)
Q Consensus 30 C~~C~~~~~--~~~C~~C~~~~yCs~ 53 (420)
|+.|-+... +..|..|+.. ||++
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~-FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNL-FCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCc-cccc
Confidence 677877733 6789999996 9964
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.25 E-value=1.8e+02 Score=25.71 Aligned_cols=64 Identities=8% Similarity=-0.066 Sum_probs=46.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHH
Q 014710 307 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA 375 (420)
Q Consensus 307 ~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA 375 (420)
+..-.....+...||..|. ..|-+.|+.++.++|..+ ++++..=...+..||.++..+|++++|
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~----~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS----NPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344456677777887776 478888998888887664 444333345788899999999999886
No 375
>PRK05978 hypothetical protein; Provisional
Probab=49.59 E-value=8.8 Score=32.03 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=23.6
Q ss_pred HHhcCccccCCCCCC-CcccCCCCCccccCCCCCccCH
Q 014710 226 AILEGYRCKDDGCSG-FLLRDSDDKGFTCQQCGLVRSK 262 (420)
Q Consensus 226 ~l~~~~~C~c~~C~~-~~~~~~~~~~~~C~~C~~~~~~ 262 (420)
.+..+++|.|++|.. .+...--...-.|+.||...+.
T Consensus 27 ~~~rGl~grCP~CG~G~LF~g~Lkv~~~C~~CG~~~~~ 64 (148)
T PRK05978 27 AMWRGFRGRCPACGEGKLFRAFLKPVDHCAACGEDFTH 64 (148)
T ss_pred HHHHHHcCcCCCCCCCcccccccccCCCccccCCcccc
Confidence 456689999999973 3322211223469999976553
No 376
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.27 E-value=2.1e+02 Score=30.09 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=57.5
Q ss_pred CCChhHHHHHHHHHHHHH-HhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 308 PFSVNLMQTREKLIKILM-ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 308 ~~h~~~~~~~~~L~~~~~-~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
.....-+.++..++.++. ...++++|..+..+.+.+.++ +..-...-..-+-|++++...+... |..+++++++..
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 334445667788999888 578999999999999888877 4444444445555688877666655 999999888877
Q ss_pred HH
Q 014710 387 RI 388 (420)
Q Consensus 387 ~~ 388 (420)
+.
T Consensus 130 ~~ 131 (608)
T PF10345_consen 130 ET 131 (608)
T ss_pred hc
Confidence 77
No 377
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=48.81 E-value=1.1e+02 Score=28.62 Aligned_cols=82 Identities=15% Similarity=0.048 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH-hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710 288 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 366 (420)
Q Consensus 288 ~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~ 366 (420)
.+.|+.+|+++.. -...++ .++...|.+-.. .++.+.|...+++.+..+ | ..+.+- ..-..-+
T Consensus 17 ~~~aR~vF~~a~~-----~~~~~~---~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f----~-~~~~~~---~~Y~~~l 80 (280)
T PF05843_consen 17 IEAARKVFKRARK-----DKRCTY---HVYVAYALMEYYCNKDPKRARKIFERGLKKF----P-SDPDFW---LEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHC-----CCCS-T---HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH----T-T-HHHH---HHHHHHH
T ss_pred hHHHHHHHHHHHc-----CCCCCH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----C-CCHHHH---HHHHHHH
Confidence 4567777777742 112222 334344555444 466777888888877553 2 233333 3333455
Q ss_pred HhhcChHHHHHHHHHHHHH
Q 014710 367 WFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 367 ~~~g~~~eA~~~l~~A~~i 385 (420)
...++.+.|..++++|+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS 99 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh
Confidence 5778888888888887653
No 378
>PF10867 DUF2664: Protein of unknown function (DUF2664); InterPro: IPR022614 The proteins in this entry belong to the Herpesviridae UL96 family. Currently no function is known.
Probab=48.49 E-value=38 Score=25.56 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCCCchHHH
Q 014710 381 EAVEILRITHGTNSPFMKE 399 (420)
Q Consensus 381 ~A~~i~~~~~G~~h~~~~~ 399 (420)
+-.+.+...||++||.+..
T Consensus 8 ~h~~fL~~alG~~HpLt~~ 26 (89)
T PF10867_consen 8 RHHQFLRRALGEQHPLTSH 26 (89)
T ss_pred HHHHHHHHHhCCCCccHHH
Confidence 4456788999999998854
No 379
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.47 E-value=82 Score=30.45 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHH
Q 014710 270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 332 (420)
Q Consensus 270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~ 332 (420)
..+..++....+.+.+++++.|...|..+..+...++|..|-.+..+..--+..+...++++.
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677788899999999999999999999999999888877666666666554443
No 380
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=48.18 E-value=2.4e+02 Score=29.69 Aligned_cols=98 Identities=19% Similarity=0.114 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
.|+..+.+..|..+...-.....+..+. .+.-.++..|-..|+.+.|.....+++.+ -| +.--.++..+-+.|.
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~--~Lw~~faklYe~~~~l~~aRvifeka~~V---~y-~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPG--TLWVEFAKLYENNGDLDDARVIFEKATKV---PY-KTVEDLAEVWCAWAE 433 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChh--hHHHHHHHHHHhcCcHHHHHHHHHHhhcC---Cc-cchHHHHHHHHHHHH
Confidence 3556666777777765432222233333 34456889999999999999999887654 11 222355788888888
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHH
Q 014710 365 LEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
.-+...+++.|++++++|..+=+.
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCc
Confidence 888889999999999999875443
No 381
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=48.00 E-value=1.3e+02 Score=24.32 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=34.9
Q ss_pred CCCChHHHHHHHHhhHHHHhh-cChHHHHHHHH------------HHHHHHHHhcCCCCchHHH-HHHHHHHHHH
Q 014710 349 PQFHPLLGLQYYTCGKLEWFL-GDTENAIKSMT------------EAVEILRITHGTNSPFMKE-LILKLEEAQA 409 (420)
Q Consensus 349 g~~hp~~~~~l~~La~~~~~~-g~~~eA~~~l~------------~A~~i~~~~~G~~h~~~~~-~~~~l~~~~~ 409 (420)
..+.|--|+.+.++|++-... +...+.+++|. ||+.|+....+..++.... +..+...++.
T Consensus 12 dd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~ 86 (122)
T cd03572 12 DDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRE 86 (122)
T ss_pred CCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHH
Confidence 356677777777777776653 55555555553 5666766666655554333 4444443333
No 382
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.99 E-value=3.3e+02 Score=27.69 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710 376 IKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 413 (420)
Q Consensus 376 ~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~ 413 (420)
+.-++.-++.+...||++||.+.++...++.++..+..
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 44466677778889999999999999999998887644
No 383
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=46.71 E-value=5.1 Score=24.27 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=13.1
Q ss_pred cCccccCCCC----------CcCCCCCCcccc
Q 014710 29 RCDGCFASSN----------LKKCSACQVVWY 50 (420)
Q Consensus 29 ~C~~C~~~~~----------~~~C~~C~~~~y 50 (420)
+|..|...+. ...|+.|.++.|
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~IhY 33 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGFIHY 33 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTEEE-
T ss_pred ccccccChhhhhcCCCCCccceECCCCCCEEe
Confidence 6888887731 467999998866
No 384
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.21 E-value=1.1e+02 Score=22.04 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhc-CCCChhHHHH
Q 014710 271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY-HPFSVNLMQT 316 (420)
Q Consensus 271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l-~~~h~~~~~~ 316 (420)
....+..+|......|++++|+.+|..++......+ ...++.....
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~ 51 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKES 51 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 344556667777778999999999999988765544 3334544433
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.92 E-value=66 Score=19.63 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.4
Q ss_pred HHHHhhHHHHhhcChHHHHHHHH
Q 014710 358 QYYTCGKLEWFLGDTENAIKSMT 380 (420)
Q Consensus 358 ~l~~La~~~~~~g~~~eA~~~l~ 380 (420)
.++.+|-.+...|++++|+.+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677888889999999999955
No 386
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=45.58 E-value=1.5e+02 Score=32.25 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=9.2
Q ss_pred HHHHHhhcHHHHHHHHHHh
Q 014710 322 KILMELEDWKEALAYCQLT 340 (420)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~ 340 (420)
.+|..++.+++|...++++
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHhhhhHHHHHHHHH
Confidence 3444455555555544443
No 387
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=45.07 E-value=14 Score=27.61 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=20.0
Q ss_pred cCCCCCCCcccCCCCCccccCCCCCcc
Q 014710 234 KDDGCSGFLLRDSDDKGFTCQQCGLVR 260 (420)
Q Consensus 234 ~c~~C~~~~~~~~~~~~~~C~~C~~~~ 260 (420)
.|+.|....+.......|.|.+|+...
T Consensus 37 ~Cp~C~~~~VkR~a~GIW~C~kCg~~f 63 (89)
T COG1997 37 VCPFCGRTTVKRIATGIWKCRKCGAKF 63 (89)
T ss_pred cCCCCCCcceeeeccCeEEcCCCCCee
Confidence 347898765555567789999999753
No 388
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.51 E-value=4.4e+02 Score=28.45 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710 381 EAVEILRITHGTNSPFMKELILKLEEAQAEASY 413 (420)
Q Consensus 381 ~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~ 413 (420)
...+-+...||++||.+..+...++.++.++..
T Consensus 325 ~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~ 357 (726)
T PRK09841 325 FREAEISQLYKKDHPTYRALLEKRQTLEQERKR 357 (726)
T ss_pred HHHHHHHHHhcccCchHHHHHHHHHHHHHHHHH
Confidence 333445667999999999888777777665543
No 389
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=44.32 E-value=35 Score=22.89 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=16.1
Q ss_pred ccCCCCCccCHHHHHHHHHHHHHHHH
Q 014710 252 TCQQCGLVRSKEEIKKIASEVNILSK 277 (420)
Q Consensus 252 ~C~~C~~~~~~~~~~~~~~~~~~l~~ 277 (420)
.|+.|+...+.+....++++....+.
T Consensus 22 ~CPlC~r~l~~e~~~~li~~~~~~i~ 47 (54)
T PF04423_consen 22 CCPLCGRPLDEEHRQELIKKYKSEIE 47 (54)
T ss_dssp E-TTT--EE-HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 79999999988877777776655433
No 390
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=44.01 E-value=16 Score=31.59 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=18.5
Q ss_pred CccccCCCCCCCcccC-CCCCccccCCCCCccC
Q 014710 230 GYRCKDDGCSGFLLRD-SDDKGFTCQQCGLVRS 261 (420)
Q Consensus 230 ~~~C~c~~C~~~~~~~-~~~~~~~C~~C~~~~~ 261 (420)
.|.| ++|..-.... .-+.+|.|+.||....
T Consensus 117 ~Y~C--p~C~~rytf~eA~~~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 117 FFFC--PNCHIRFTFDEAMEYGFRCPQCGEMLE 147 (178)
T ss_pred EEEC--CCCCcEEeHHHHhhcCCcCCCCCCCCe
Confidence 3677 6787422211 1245899999998754
No 391
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=42.98 E-value=24 Score=24.99 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=19.7
Q ss_pred CCCCCCCcccCCCCCccccCCCCCccC
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGLVRS 261 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~~~~ 261 (420)
|+.|............|.|+.||...+
T Consensus 31 C~~CG~~~~~~~~~r~~~C~~Cg~~~~ 57 (69)
T PF07282_consen 31 CPRCGHRNKKRRSGRVFTCPNCGFEMD 57 (69)
T ss_pred ccCcccccccccccceEEcCCCCCEEC
Confidence 567876655544566899999998755
No 392
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=42.88 E-value=18 Score=28.54 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.8
Q ss_pred CCccCccccCC---C--CCcCCCCCCcc
Q 014710 26 SISRCDGCFAS---S--NLKKCSACQVV 48 (420)
Q Consensus 26 ~~~~C~~C~~~---~--~~~~C~~C~~~ 48 (420)
...+|..|.++ + .++.||.|+..
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG~~ 35 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCGTE 35 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCCCc
Confidence 47899999998 3 37889999875
No 393
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=42.34 E-value=99 Score=30.25 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH---hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 361 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~---~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~ 361 (420)
-.+|+..+++.+.+...- ...-+....+....|-++.+ .|+.++|+.....++..- +...|. .+--
T Consensus 154 iqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~----~~~~~d---~~gL 222 (374)
T PF13281_consen 154 IQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD----ENPDPD---TLGL 222 (374)
T ss_pred hhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc----CCCChH---HHHH
Confidence 345566665555553321 00111233345556667777 799999998877753332 223333 2333
Q ss_pred hhHHHHh---------hcChHHHHHHHHHHHHHH
Q 014710 362 CGKLEWF---------LGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 362 La~~~~~---------~g~~~eA~~~l~~A~~i~ 386 (420)
+|.+|-. ....++|+..|.++..+-
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 3333321 234677888888876643
No 394
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=42.16 E-value=12 Score=24.22 Aligned_cols=39 Identities=18% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCChHhHHHHhcCccccCCCCCCC-cccCCCCCccccCCCCC
Q 014710 218 QFDDIQESAILEGYRCKDDGCSGF-LLRDSDDKGFTCQQCGL 258 (420)
Q Consensus 218 ~~~~~~~~~l~~~~~C~c~~C~~~-~~~~~~~~~~~C~~C~~ 258 (420)
|+..++.-.-.++|.| ++|... .........|.|..|+.
T Consensus 6 c~~~l~~~RW~~g~~C--P~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 6 CREYLEEIRWPDGFVC--PHCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred HHHHHHHhcCCCCCCC--CCCCCeeeEEeCCCCeEECCCCCC
Confidence 3333444444557775 688853 11122246799999975
No 395
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=41.66 E-value=10 Score=26.58 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=21.7
Q ss_pred CccCccccCCC-C----CcCCCCCCcccccChhhch
Q 014710 27 ISRCDGCFASS-N----LKKCSACQVVWYCGSNCQK 57 (420)
Q Consensus 27 ~~~C~~C~~~~-~----~~~C~~C~~~~yCs~~C~~ 57 (420)
...|++|.... | ...=.+=+..+|||..|.+
T Consensus 3 ~~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k 38 (66)
T COG2075 3 VRVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEK 38 (66)
T ss_pred eeEecCcCCccCCCceEEEEecCCeEEEEechhHHH
Confidence 35799999883 2 2233345566899999997
No 396
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=41.22 E-value=24 Score=19.90 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.7
Q ss_pred cCccccCCCC--CcCCCCCCcc
Q 014710 29 RCDGCFASSN--LKKCSACQVV 48 (420)
Q Consensus 29 ~C~~C~~~~~--~~~C~~C~~~ 48 (420)
.|-.|.+..+ ...|+.|++.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCC
Confidence 5888888854 6789999875
No 397
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.89 E-value=4.1e+02 Score=27.03 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhc----H---HHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710 286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED----W---KEALAYCQLTIPVYQRVYPQFHPLLGLQ 358 (420)
Q Consensus 286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~----~---~~A~~~~~~~l~~~~~~~g~~hp~~~~~ 358 (420)
|..++|+..+-.+ +-..|.-..+++-+..+..++..... . -+-+.|.++++. + ...-+++
T Consensus 712 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~ 778 (831)
T PRK15180 712 GRLDEALSVLISL-----KRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLV-----F---DSENAYA 778 (831)
T ss_pred ccHHHHHHHHHhh-----hccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhhee-----e---ccchHHH
Confidence 5566665543222 22345555566766666666654311 1 122333333322 1 1222334
Q ss_pred HHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710 359 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405 (420)
Q Consensus 359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~ 405 (420)
+---|.-.+.+.+|.+|+.|+++ ++..-||..|.+.++-..+.
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 821 (831)
T PRK15180 779 LKYAALNAMHLRDYTQALQYWQR----LEKVNGPTEPVTRQISTCIT 821 (831)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHH----HHhccCCCcchHHHHHHHHH
Confidence 43344445678999999999987 56778999999988765554
No 398
>COG1084 Predicted GTPase [General function prediction only]
Probab=40.78 E-value=2e+02 Score=27.64 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=62.9
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CCChHHHHHHHHh--hHHHHhhcChHHHHHHHHH
Q 014710 305 LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTC--GKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 305 ~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~~~~~l~~L--a~~~~~~g~~~eA~~~l~~ 381 (420)
-|||.+..++++....=..-..++...-|...-+++..-|-+.+. ...|..+..+..- |.+..-..+.++.+.++.+
T Consensus 74 ~LhpFY~eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~ 153 (346)
T COG1084 74 DLHPFYRELIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRK 153 (346)
T ss_pred ccChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 477888777777765556666667777777777776665555544 5577777766654 4444445688899999999
Q ss_pred HHHHHHHhcCCC
Q 014710 382 AVEILRITHGTN 393 (420)
Q Consensus 382 A~~i~~~~~G~~ 393 (420)
|...+.....-|
T Consensus 154 ~r~~l~~LP~Id 165 (346)
T COG1084 154 ARDHLKKLPAID 165 (346)
T ss_pred HHHHHhcCCCCC
Confidence 999999887655
No 399
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.31 E-value=36 Score=30.74 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=43.9
Q ss_pred HHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710 323 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 385 (420)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i 385 (420)
...+.+|.+.|.+.+.+++... |.-+.-++.+|......|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3445688888888888887764 677788889999988999999999988887654
No 400
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=40.28 E-value=2.9e+02 Score=25.10 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhh--------cHHHHHHHHHHhH
Q 014710 270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--------DWKEALAYCQLTI 341 (420)
Q Consensus 270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g--------~~~~A~~~~~~~l 341 (420)
+++..+.+++-.+..+|++++|..+++.+-+.....-.......+.-.+.+...+.+.. .-++.+....+..
T Consensus 3 ~eLd~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~al~~~~~~~~e~~~~at~~R 82 (232)
T PF09577_consen 3 KELDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKKALTSVSMSEEEKIRAATQFR 82 (232)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 34555566666777899999999988887665433222222355665666666555432 2334444455555
Q ss_pred HHHHHhcCCCChHHHHHHHHh
Q 014710 342 PVYQRVYPQFHPLLGLQYYTC 362 (420)
Q Consensus 342 ~~~~~~~g~~hp~~~~~l~~L 362 (420)
-....+-.+.+|.=...+.-+
T Consensus 83 LavDAl~~~~qPLW~~~e~~i 103 (232)
T PF09577_consen 83 LAVDALTHKHQPLWLQYEKPI 103 (232)
T ss_pred HHHHHhcCCCCCcHHHHHHHH
Confidence 566777777777655444444
No 401
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=40.13 E-value=1.9e+02 Score=28.01 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=32.9
Q ss_pred CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc
Q 014710 351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 390 (420)
Q Consensus 351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~ 390 (420)
.+-..+.+++.+|....+.+++-+|+..|+.|.+.++...
T Consensus 248 ~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 248 IALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 3455788888889988889999999999999999766553
No 402
>PF14949 ARF7EP_C: ARF7 effector protein C-terminus
Probab=40.05 E-value=19 Score=27.97 Aligned_cols=26 Identities=23% Similarity=0.704 Sum_probs=18.9
Q ss_pred CcCCCCCCcccccChhhchh-hhhhhHh
Q 014710 39 LKKCSACQVVWYCGSNCQKL-DWKLHRL 65 (420)
Q Consensus 39 ~~~C~~C~~~~yCs~~C~~~-~~~~H~~ 65 (420)
..||+.|+.. -|+.+|+.. -|-|-.+
T Consensus 74 ~~PC~~C~S~-KCG~~CR~nRkw~ye~i 100 (103)
T PF14949_consen 74 HYPCPKCGSR-KCGPECRCNRKWVYESI 100 (103)
T ss_pred cccCCCCCCC-ccChhhCcCCceeeeee
Confidence 4789999985 999999853 4554333
No 403
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.02 E-value=3.5e+02 Score=26.07 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=58.2
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHH-HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLM-QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 356 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~-~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 356 (420)
+...++...+|..|+..|...++.- -.++.+- -++.+=+-+-..+|+|..|+.-|.+++.. .|.-.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--------~P~h~ 153 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--------KPTHL 153 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--------Ccchh
Confidence 3344444445666666666655432 2344443 34566666677789999999999988654 35556
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
..++.=|+.++++.++.+|.....+
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 6777778888888776666555443
No 404
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=39.08 E-value=14 Score=31.40 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=18.4
Q ss_pred CccccCCCCCCCcccCC-CCCccccCCCCCccC
Q 014710 230 GYRCKDDGCSGFLLRDS-DDKGFTCQQCGLVRS 261 (420)
Q Consensus 230 ~~~C~c~~C~~~~~~~~-~~~~~~C~~C~~~~~ 261 (420)
.|.| ++|..-..... -+.+|.|+.||....
T Consensus 109 ~Y~C--p~c~~r~tf~eA~~~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 109 FFIC--PNMCVRFTFNEAMELNFTCPRCGAMLD 139 (158)
T ss_pred eEEC--CCCCcEeeHHHHHHcCCcCCCCCCEee
Confidence 3677 67874222111 135899999998754
No 405
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=38.88 E-value=30 Score=29.33 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCCCCCCcccCC---------------CCCccccCCCCCc-cCHHHHHHHHH
Q 014710 235 DDGCSGFLLRDS---------------DDKGFTCQQCGLV-RSKEEIKKIAS 270 (420)
Q Consensus 235 c~~C~~~~~~~~---------------~~~~~~C~~C~~~-~~~~~~~~~~~ 270 (420)
|+.|++.+.+.+ ..+-|.|++||+. ..+.++..|.+
T Consensus 100 Cp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiYW~GsHw~~m~~ 151 (165)
T COG1656 100 CPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIYWKGSHWRRMVE 151 (165)
T ss_pred CcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccccCchHHHHHHH
Confidence 578998765432 1346789999974 23445555444
No 406
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=38.48 E-value=16 Score=24.16 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=17.1
Q ss_pred CCCCCCCcccCCCCCccccCCCCCc
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGLV 259 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~~ 259 (420)
|.+|...+.-.....+..|+.||..
T Consensus 9 C~~Cg~~~~~~~~~~~irCp~Cg~r 33 (49)
T COG1996 9 CARCGREVELDQETRGIRCPYCGSR 33 (49)
T ss_pred hhhcCCeeehhhccCceeCCCCCcE
Confidence 3588876633444667889999864
No 407
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.22 E-value=3.4e+02 Score=25.37 Aligned_cols=105 Identities=15% Similarity=0.175 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHh----cCCCChHHH------
Q 014710 287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV----YPQFHPLLG------ 356 (420)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~----~g~~hp~~~------ 356 (420)
+.++|+..|++++.+. |..--+=+.++..+..++..+|++++-.+.++++|.-.+.. |.+.+..-.
T Consensus 42 ~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred CHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 5566666666665542 33444555666666666777777777666666665533222 221111100
Q ss_pred ----------------------------HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710 357 ----------------------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 395 (420)
Q Consensus 357 ----------------------------~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~ 395 (420)
..-.+||++++..|.+..-.+.+++-.......-|.|..
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~ 184 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQ 184 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhh
Confidence 011234666666777777666666666666666666654
No 408
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=37.96 E-value=11 Score=22.94 Aligned_cols=25 Identities=24% Similarity=0.648 Sum_probs=16.9
Q ss_pred CCCCCCCcccCCCCCc-cccCCCCCc
Q 014710 235 DDGCSGFLLRDSDDKG-FTCQQCGLV 259 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~-~~C~~C~~~ 259 (420)
|+.|.+.+.|..+... ..|..|+..
T Consensus 4 Cp~C~nlL~p~~~~~~~~~C~~C~Y~ 29 (35)
T PF02150_consen 4 CPECGNLLYPKEDKEKRVACRTCGYE 29 (35)
T ss_dssp ETTTTSBEEEEEETTTTEEESSSS-E
T ss_pred CCCCCccceEcCCCccCcCCCCCCCc
Confidence 6899988877654322 269999864
No 409
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=37.59 E-value=24 Score=23.50 Aligned_cols=24 Identities=21% Similarity=0.589 Sum_probs=16.0
Q ss_pred cCCCCCC-CcccCCCCCccccCCCCCc
Q 014710 234 KDDGCSG-FLLRDSDDKGFTCQQCGLV 259 (420)
Q Consensus 234 ~c~~C~~-~~~~~~~~~~~~C~~C~~~ 259 (420)
.|++|.. .+.+ ..+.|.|.+|+.+
T Consensus 22 fCP~Cg~~~m~~--~~~r~~C~~Cgyt 46 (50)
T PRK00432 22 FCPRCGSGFMAE--HLDRWHCGKCGYT 46 (50)
T ss_pred cCcCCCcchhec--cCCcEECCCcCCE
Confidence 3678876 4433 2357899999853
No 410
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.50 E-value=16 Score=29.04 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=20.5
Q ss_pred HhcCccccCCCCCC------CcccCCCCCccccCCCCCccC
Q 014710 227 ILEGYRCKDDGCSG------FLLRDSDDKGFTCQQCGLVRS 261 (420)
Q Consensus 227 l~~~~~C~c~~C~~------~~~~~~~~~~~~C~~C~~~~~ 261 (420)
++.+++|.|++|.. ++++. -.|..||....
T Consensus 16 i~~Gl~grCP~CGeGrLF~gFLK~~-----p~C~aCG~dyg 51 (126)
T COG5349 16 IKRGLRGRCPRCGEGRLFRGFLKVV-----PACEACGLDYG 51 (126)
T ss_pred HHHHhcCCCCCCCCchhhhhhcccC-----chhhhcccccc
Confidence 34478999999973 33332 35999997654
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.50 E-value=2.2e+02 Score=29.50 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCC----------------hhHHHHHHHHHHHHHHhhcHHHHHH
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS----------------VNLMQTREKLIKILMELEDWKEALA 335 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h----------------~~~~~~~~~L~~~~~~~g~~~~A~~ 335 (420)
+.+++.-|..+..+|+.+-+.++.++++....+.+||.- -..+-++..-++-..+.|-|..|++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 455666667777789999999999999888888887742 2222233333344455689999999
Q ss_pred HHHHhHHH
Q 014710 336 YCQLTIPV 343 (420)
Q Consensus 336 ~~~~~l~~ 343 (420)
+|+-++.+
T Consensus 364 ~cKlllsL 371 (665)
T KOG2422|consen 364 WCKLLLSL 371 (665)
T ss_pred HHHHHhhc
Confidence 99876543
No 412
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=37.41 E-value=3.6e+02 Score=26.02 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=42.6
Q ss_pred CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHhccc
Q 014710 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG--TNSPFMKELILKLEEAQAEASYKL 415 (420)
Q Consensus 350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G--~~h~~~~~~~~~l~~~~~~~~~~~ 415 (420)
..+-..+.+.+..|....+.+++-+++..|+.|...++..-. +....+.++...+.......+.++
T Consensus 249 K~~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~~~~~~~~~~~l~~~i~~~l~~aekDN 316 (346)
T cd09240 249 KQAYFHALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQSRAGEYVDVKDFAAKISRALTAAKKDN 316 (346)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhcc
Confidence 344556778888888888889999999999999887755432 111224444455555444444444
No 413
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.36 E-value=3.6e+02 Score=25.44 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=67.4
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
...++..++++..+++...+- ..-......--.++.++.+.|.|.+|+...-.++.-+++.- +-|.....+.-=++
T Consensus 98 ~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK~~Li~vhllESK 173 (421)
T COG5159 98 SDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DKINLITVHLLESK 173 (421)
T ss_pred CccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--CccceeehhhhhHH
Confidence 456677777777776643221 01123344556788899999999999999888888777764 34444444555578
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHhc
Q 014710 365 LEWFLGDTENAIKSMTEAVEILRITH 390 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A~~i~~~~~ 390 (420)
+|++..+..++..-+.-|.......|
T Consensus 174 vyh~irnv~KskaSLTaArt~Ans~Y 199 (421)
T COG5159 174 VYHEIRNVSKSKASLTAARTLANSAY 199 (421)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhhccC
Confidence 88888888877777766655444443
No 414
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.26 E-value=73 Score=34.13 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=30.4
Q ss_pred CCCCCCCcccCCC-------------CCccccCCCCCcc---CHHHHHHHHHHHHHHHHHHhhhhcCC
Q 014710 235 DDGCSGFLLRDSD-------------DKGFTCQQCGLVR---SKEEIKKIASEVNILSKKTLALTSCG 286 (420)
Q Consensus 235 c~~C~~~~~~~~~-------------~~~~~C~~C~~~~---~~~~~~~~~~~~~~l~~~a~~~~~~g 286 (420)
|+.|+.++.-... .....|+.||... -.--.+++.+++..++..+......+
T Consensus 447 Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~ 514 (730)
T COG1198 447 CPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDS 514 (730)
T ss_pred CCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEcc
Confidence 8899976543222 2345688888651 12234666677777776665554433
No 415
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=37.24 E-value=14 Score=35.34 Aligned_cols=47 Identities=34% Similarity=0.688 Sum_probs=39.6
Q ss_pred CccCccccCCCCCcCCCCCCcccccChhhchhhhh-hhHhhchhhhhch
Q 014710 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWK-LHRLECQVLSRLD 74 (420)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~-~H~~EC~~~~~~~ 74 (420)
...|..|... ....|..|+.+.|||..=|..+|. .|+-+|.......
T Consensus 136 ~~~~~~~~~~-a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~ 183 (362)
T KOG2061|consen 136 ADLCGSCGCS-APAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLG 183 (362)
T ss_pred cchhccCccc-CcccccccchhhhcCchhhcccccccccccccCccccc
Confidence 4678888777 788999999999999999999996 6999998765444
No 416
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.08 E-value=1.2e+02 Score=29.78 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=44.7
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 341 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l 341 (420)
++.+..-|+++.|++.|.++..-. .+-.+++++..+++.+.+..|+|..-..+.-++.
T Consensus 157 ~dhy~~cG~l~~Alr~YsR~RdYC-----Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 157 GDHYLDCGQLDNALRCYSRARDYC-----TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHhccHHHHHhhhhhhhhhh-----cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 445566799999999998864433 4567788999999999999999988777665553
No 417
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=37.05 E-value=2.3e+02 Score=23.03 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH-------HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc
Q 014710 318 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 390 (420)
Q Consensus 318 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-------~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~ 390 (420)
..+|+...+.+++-.++-+|++++.+.+..--..... ......+||...-..|+.+=.++||+-|-+-... +
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt-L 83 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT-L 83 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH-h
Confidence 3466777788999999999999999888873222211 2234678899888899999999999987664433 3
Q ss_pred CCCCc
Q 014710 391 GTNSP 395 (420)
Q Consensus 391 G~~h~ 395 (420)
-|+.|
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 45555
No 418
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.76 E-value=4.4e+02 Score=26.29 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=60.1
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHH--HHHHHHHH-----Hhh--cH-HHHHHHHHHhHHHH
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILM-----ELE--DW-KEALAYCQLTIPVY 344 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~--~~L~~~~~-----~~g--~~-~~A~~~~~~~l~~~ 344 (420)
.++.+-+++..|+|.+|+..|+.++...--+.-.+....-.+. ..+..-|+ .+. .. +...+-.+|.+++.
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELA 286 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELA 286 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 3455666778899999999999987653222222222222221 11111121 110 00 01111123334433
Q ss_pred HHhcC-C-CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710 345 QRVYP-Q-FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 408 (420)
Q Consensus 345 ~~~~g-~-~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~ 408 (420)
-.+-- . .-+....+|..-=.+.+..++|..|..+.+|-+++ +|..+...+....++.++
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel-----~p~~~~a~qArKil~~~e 347 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLEL-----NPSPEVAEQARKILQACE 347 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT-------SCHHHHHHHHHHHHHC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHh
Confidence 33321 1 11112222222223344679999999888877653 666666666777666664
No 419
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=36.59 E-value=1.3e+02 Score=33.72 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=39.0
Q ss_pred hhcHHHHHHHHHHhHHHHHHhcC--CCChHHHHHHHHhhHHHHhhcChHHHHHHHH------HHHHHHHHhcCCCCchH
Q 014710 327 LEDWKEALAYCQLTIPVYQRVYP--QFHPLLGLQYYTCGKLEWFLGDTENAIKSMT------EAVEILRITHGTNSPFM 397 (420)
Q Consensus 327 ~g~~~~A~~~~~~~l~~~~~~~g--~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~------~A~~i~~~~~G~~h~~~ 397 (420)
.|-|.+|+.+++--.+-++.+|- .+|-.--..+.+-|.+|...|+.++|++.|+ +|+.+.....-+...+.
T Consensus 921 h~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~ 999 (1265)
T KOG1920|consen 921 HGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELV 999 (1265)
T ss_pred cccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHH
Confidence 35566666655544444444441 2333333333444667777899999988765 46666665433333333
No 420
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=36.49 E-value=21 Score=21.40 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=17.6
Q ss_pred CCCCCCCcccCCCCCccccCCCCCc
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGLV 259 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~~ 259 (420)
|..|.++.....+.+...|..|+..
T Consensus 6 C~~C~~~~i~~~~~~~~~C~~Cg~~ 30 (33)
T PF08792_consen 6 CSKCGGNGIVNKEDDYEVCIFCGSS 30 (33)
T ss_pred cCCCCCCeEEEecCCeEEcccCCcE
Confidence 5678887766555566789999864
No 421
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=36.25 E-value=5.8e+02 Score=27.51 Aligned_cols=57 Identities=14% Similarity=-0.025 Sum_probs=30.1
Q ss_pred HHhhcHHHHHHHHHHh--HHHHHHhcCCCChHH-HHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 325 MELEDWKEALAYCQLT--IPVYQRVYPQFHPLL-GLQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 325 ~~~g~~~~A~~~~~~~--l~~~~~~~g~~hp~~-~~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
+..|..+.|++++.+. .+-+-++.+..||.. ......+|+-+-..|+.++|+..+-+
T Consensus 848 iti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 848 ITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred EEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 3344555556665432 112223444555543 34556677777777777776665544
No 422
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=35.91 E-value=86 Score=30.71 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcCh-----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710 330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT-----ENAIKSMTEAVEILRITHGTNSPFMKELILKL 404 (420)
Q Consensus 330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~-----~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l 404 (420)
...|++|++++-+ .+.|. .+.++|.+++.+|+. .+=..+|++|-+|+.+.-+..|-.+.+++.+|
T Consensus 334 ~~~Al~yL~kA~d-------~ddPe---tWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLdnL 403 (404)
T PF12753_consen 334 IKKALEYLKKAQD-------EDDPE---TWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDILDNL 403 (404)
T ss_dssp HHHHHHHHHHHHH-------S--TT---HHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHHhhc-------cCChh---HHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHHhhc
Confidence 3345555554433 55554 344555555544442 33468899999999999999999999888765
No 423
>PRK11827 hypothetical protein; Provisional
Probab=35.83 E-value=28 Score=24.16 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=19.2
Q ss_pred CCCCCCCcccCCCCCccccCCCCCc
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGLV 259 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~~ 259 (420)
|+.|.|.+....+.....|..|+..
T Consensus 11 CP~ckg~L~~~~~~~~Lic~~~~la 35 (60)
T PRK11827 11 CPVCNGKLWYNQEKQELICKLDNLA 35 (60)
T ss_pred CCCCCCcCeEcCCCCeEECCccCee
Confidence 4799998876666667889999864
No 424
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=35.63 E-value=20 Score=24.41 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=17.3
Q ss_pred CccCccccCCCCCcCCCCCCcccccChhhchh
Q 014710 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKL 58 (420)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~ 58 (420)
+.+|--|.+..+.- -.+||++|+.-
T Consensus 8 H~HC~VCg~aIp~d-------e~~CSe~C~ei 32 (64)
T COG4068 8 HRHCVVCGKAIPPD-------EQVCSEECGEI 32 (64)
T ss_pred CccccccCCcCCCc-------cchHHHHHHHH
Confidence 56788888774421 24899999953
No 425
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.53 E-value=4.3e+02 Score=26.89 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=47.7
Q ss_pred HHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 323 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
..+.-++|++...-.+++..++++.+-.+|..+- .+.+.+..-+.....+-|..++.+|+.++-+.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~it-LWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNIT-LWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccch-HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 4555577777777777777777777766655543 55666777777788888999999998877544
No 426
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=35.20 E-value=18 Score=29.12 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=22.9
Q ss_pred CccCccccCCC-C----CcCCCCCCcccccChhhchh
Q 014710 27 ISRCDGCFASS-N----LKKCSACQVVWYCGSNCQKL 58 (420)
Q Consensus 27 ~~~C~~C~~~~-~----~~~C~~C~~~~yCs~~C~~~ 58 (420)
...|++|.... | .+.=...+..+|||..|.+.
T Consensus 4 ~e~CsFcG~kIyPG~G~~fVR~DGkvf~FcssKC~k~ 40 (131)
T PRK14891 4 TRTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKN 40 (131)
T ss_pred eeeecCcCCcccCCCCcEEEecCCCEEEEecHHHHHH
Confidence 45799998873 2 33445677788999999753
No 427
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.19 E-value=3.9e+02 Score=25.85 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
+.++++.++-..|+++++.++-.+.-+.++ ...-.....+...|..+.+.+.|+.|++.|.+
T Consensus 211 a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr----~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 211 ASHAKAHVLEMNGRHKEGKEFMYKTEDDWR----QSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHhcccchh----hhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 344455555555555555555444433332 11122233344556666667777777777765
No 428
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=34.92 E-value=3.2e+02 Score=25.88 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=54.7
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH-hcCCCChHH
Q 014710 277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR-VYPQFHPLL 355 (420)
Q Consensus 277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~-~~g~~hp~~ 355 (420)
.+|.....+++.++|+..++..... . .+--..+..+..+++++...|..+.|..+++.+....+. .+..+-|.+
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~---~--~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP~L 292 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQ---A--REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEPAL 292 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhccc---C--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccChHH
Confidence 3344445567888888776553221 1 222334555667889999999999999999999887664 466888887
Q ss_pred HHHHHH
Q 014710 356 GLQYYT 361 (420)
Q Consensus 356 ~~~l~~ 361 (420)
...+..
T Consensus 293 ~~~l~~ 298 (301)
T TIGR03362 293 ALRVLQ 298 (301)
T ss_pred HHHHHH
Confidence 766544
No 429
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=34.92 E-value=23 Score=34.87 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=20.8
Q ss_pred CCCCCCCcccCCCCCccccCCCCCccCH
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGLVRSK 262 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~~~~~ 262 (420)
|++|.+-+..-... +|+|.+||.....
T Consensus 353 Cp~Cg~~m~S~G~~-g~rC~kCg~~~~~ 379 (421)
T COG1571 353 CPRCGGRMKSAGRN-GFRCKKCGTRARE 379 (421)
T ss_pred CCccCCchhhcCCC-CcccccccccCCc
Confidence 67999877655555 9999999986543
No 430
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=34.55 E-value=1.3e+02 Score=23.81 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhh
Q 014710 265 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 304 (420)
Q Consensus 265 ~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~ 304 (420)
+..+...+..++++|...+..|+.+.|--+|-+...+...
T Consensus 31 l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 31 LKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4446667778888888888889999888888888777733
No 431
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=34.03 E-value=4.2e+02 Score=26.26 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=56.7
Q ss_pred hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHH---HhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710 280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM---ELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 356 (420)
Q Consensus 280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~---~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~ 356 (420)
......|++++|.+-|+..+.. --..++. |-.+|+ ..|+.+-|..|..++.... |..-
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~d-------PEtRllG----LRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~ 188 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLDD-------PETRLLG----LRGLYLEAQRLGAREAARHYAERAAEKA--------PQLP 188 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhcC-------hHHHHHh----HHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCc
Confidence 3345568999998887766432 1111222 223343 4588899999888775443 4444
Q ss_pred HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
....-+-......|++++|+++++.......+.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 444444344557899999999998877765554
No 432
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=34.00 E-value=4.8e+02 Score=25.91 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710 379 MTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 412 (420)
Q Consensus 379 l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~ 412 (420)
++.-++-+...||++||.+..+...++.++..+.
T Consensus 266 le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 266 AESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 4455556677799999999999999888887653
No 433
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=33.69 E-value=20 Score=23.98 Aligned_cols=26 Identities=27% Similarity=0.834 Sum_probs=13.6
Q ss_pred cCccccCCCC----------CcCCCCCCcccccChhhc
Q 014710 29 RCDGCFASSN----------LKKCSACQVVWYCGSNCQ 56 (420)
Q Consensus 29 ~C~~C~~~~~----------~~~C~~C~~~~yCs~~C~ 56 (420)
.|..|.+..+ ...|+.|+.. || -+|-
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~-FC-~dCD 36 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNH-FC-IDCD 36 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT---B--HHHH
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCc-cc-cCcC
Confidence 3677776632 4789999996 98 5564
No 434
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=33.68 E-value=31 Score=23.64 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=12.9
Q ss_pred EEEEecCCCCCCccCCCh
Q 014710 204 VVRAVQHVPKGAEGQFDD 221 (420)
Q Consensus 204 ~vra~r~I~~Gee~~~~~ 221 (420)
++.|.++|++|+.+.-.+
T Consensus 3 vvVA~~di~~G~~i~~~d 20 (63)
T PF08666_consen 3 VVVAARDIPAGTVITAED 20 (63)
T ss_dssp EEEESSTB-TT-BECTTT
T ss_pred EEEEeCccCCCCEEccCC
Confidence 578999999999986544
No 435
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=33.59 E-value=2.1e+02 Score=29.48 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHh-cCCCChHHHHHHHHhhHHH
Q 014710 289 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV-YPQFHPLLGLQYYTCGKLE 366 (420)
Q Consensus 289 ~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~-~g~~hp~~~~~l~~La~~~ 366 (420)
..++++|.+++...+..++..|++-.- -++..+.+.+++.+|+.....+-++.+.+ |..+.-.+=..++.+|.-+
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYt---y~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneL 371 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYT---YLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANEL 371 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHH---HHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccce---ehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHH
Confidence 467899999999888888866665432 35667888899999998877776665543 5666666666666655443
No 436
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=33.47 E-value=2.7e+02 Score=22.80 Aligned_cols=91 Identities=8% Similarity=0.064 Sum_probs=54.4
Q ss_pred CHHHHHHH-HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh--------HHHHHHHHHHHHHH-----
Q 014710 261 SKEEIKKI-ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN--------LMQTREKLIKILME----- 326 (420)
Q Consensus 261 ~~~~~~~~-~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~--------~~~~~~~L~~~~~~----- 326 (420)
+|.++..+ .+..-..+..|...++++++.+..+...++..+...+...-++. +..+++-+.+.+.+
T Consensus 19 SP~~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~y~~~rL~~ANl~n 98 (132)
T COG1516 19 SPHKLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYDYMVRRLVQANLKN 98 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45554444 36666667788888999998877777777666544332222222 22233222222222
Q ss_pred -hhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710 327 -LEDWKEALAYCQLTIPVYQRVYPQF 351 (420)
Q Consensus 327 -~g~~~~A~~~~~~~l~~~~~~~g~~ 351 (420)
....++...+.+.+.+.|+.+.+..
T Consensus 99 d~~~i~eV~~ll~~l~eaW~ei~k~~ 124 (132)
T COG1516 99 DASKIDEVIGLLRELREAWKEIMKKE 124 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2567778888888888888877643
No 437
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=33.01 E-value=3.4e+02 Score=25.95 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc
Q 014710 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 390 (420)
Q Consensus 350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~ 390 (420)
..+-..+.+++.+|..+.+.+++-+|+..|++|...++..-
T Consensus 245 K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 245 KKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 34557888889999998888899999999998888776653
No 438
>PRK05685 fliS flagellar protein FliS; Validated
Probab=32.92 E-value=2.7e+02 Score=22.65 Aligned_cols=89 Identities=7% Similarity=0.041 Sum_probs=47.3
Q ss_pred CHHHHHHH-HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhH-HHHHHHHHHHHHH------------
Q 014710 261 SKEEIKKI-ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILME------------ 326 (420)
Q Consensus 261 ~~~~~~~~-~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~-~~~~~~L~~~~~~------------ 326 (420)
++.++.-+ .+.+-...+.|......|+++++-....++..+...+...-++.. ..+..+|..+|..
T Consensus 23 sp~~Li~mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~L~~A~~~~ 102 (132)
T PRK05685 23 SPHKLIQMLYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRRLLEANLRN 102 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45554433 355555556666677788888776665665554433222222221 1222333333322
Q ss_pred -hhcHHHHHHHHHHhHHHHHHhcC
Q 014710 327 -LEDWKEALAYCQLTIPVYQRVYP 349 (420)
Q Consensus 327 -~g~~~~A~~~~~~~l~~~~~~~g 349 (420)
...++++..+...+.+.|+.+-+
T Consensus 103 d~~~l~ev~~il~~LreaW~~i~~ 126 (132)
T PRK05685 103 DVQAIDEVEGLLREIKEAWKQIPP 126 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566777777777777766554
No 439
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=32.76 E-value=2e+02 Score=21.00 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=30.2
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhc-CCCChhHHHHH
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY-HPFSVNLMQTR 317 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l-~~~h~~~~~~~ 317 (420)
..+...|......|++++|+..|...+.....++ ...++..-+++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~ 52 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNL 52 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 3445566666778999999999999988766544 23344444433
No 440
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=32.60 E-value=2e+02 Score=21.00 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhc
Q 014710 271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 306 (420)
Q Consensus 271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l 306 (420)
....+...|.....+|++.+|+..|+.+.....+++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 344556677777889999999999999988766544
No 441
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.51 E-value=1.7e+02 Score=27.61 Aligned_cols=58 Identities=12% Similarity=-0.050 Sum_probs=38.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH---------------HHHhcCCCChHHHHHHHHhhHHH
Q 014710 309 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------YQRVYPQFHPLLGLQYYTCGKLE 366 (420)
Q Consensus 309 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------------~~~~~g~~hp~~~~~l~~La~~~ 366 (420)
.+|.-.+.+..|+..+...|+.+.|++++..++.- +=..+|+.||.+.....+|+.++
T Consensus 231 adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL~slL 303 (304)
T COG3118 231 ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKLYSLL 303 (304)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 45666778889999999999999998876544332 11234566666665555555543
No 442
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=32.51 E-value=83 Score=18.19 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=19.7
Q ss_pred HHHHhhHHHHhh----cChHHHHHHHHHHHH
Q 014710 358 QYYTCGKLEWFL----GDTENAIKSMTEAVE 384 (420)
Q Consensus 358 ~l~~La~~~~~~----g~~~eA~~~l~~A~~ 384 (420)
..+.||..+..- .+.++|..++++|-+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 567777777642 378889999988864
No 443
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=31.65 E-value=75 Score=28.56 Aligned_cols=65 Identities=12% Similarity=0.043 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHhHHHHHHhcCCCChHH-HHHHHHhhHH--HHhhcChHHHHHHHHHHHHHHHHhcCCCC
Q 014710 329 DWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTCGKL--EWFLGDTENAIKSMTEAVEILRITHGTNS 394 (420)
Q Consensus 329 ~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~~l~~La~~--~~~~g~~~eA~~~l~~A~~i~~~~~G~~h 394 (420)
-|+.-..|++++.+..+..+|.+|+.. ...-.+.... +...|+++++.++|..+...++.. |+|-
T Consensus 11 gpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~-GAd~ 78 (230)
T COG1794 11 GPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERA-GADF 78 (230)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhc-CCCE
Confidence 367778899999999999998766544 3333444444 557899999999999999999985 6653
No 444
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=31.59 E-value=3.7e+02 Score=23.80 Aligned_cols=143 Identities=20% Similarity=0.147 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhh---hcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 014710 264 EIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK---LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 340 (420)
Q Consensus 264 ~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~---~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 340 (420)
++.++..++....+.+-....++++++|.+.+..+.+...+ .+.+ ++.+.. ...+....++|-+|+.++.-+
T Consensus 22 ~iik~sRdI~~~Sk~~I~~lHr~~~~~a~~~l~~a~~~~~~l~~~~~~-~~~~~y----~~~~~~~lQEyvEA~~f~~~l 96 (204)
T PRK14562 22 EALKLSREIVRLSGDAIRAIHRGDFEEAEKLLKEAEELVKELKELLKD-HPELYY----AGYVGTALQEYVEALLVYSLL 96 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcc-Cchhhh----hhhcchHHHHHHHHHHHHHHH
Confidence 44444555555555544445556777777666666554332 3332 443311 111222344555555543211
Q ss_pred HHHHHHhcC---CCChHHHHHHHHhh----------HHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHHHHH
Q 014710 341 IPVYQRVYP---QFHPLLGLQYYTCG----------KLEWFLGDTENAIKSMTEAVEILRITHGTNSP--FMKELILKLE 405 (420)
Q Consensus 341 l~~~~~~~g---~~hp~~~~~l~~La----------~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~--~~~~~~~~l~ 405 (420)
- ..-+| .-|......+.-|+ .-....|+++.|..++.=--+++....-=+.| .+.++..++.
T Consensus 97 ~---~~~l~s~eel~v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D 173 (204)
T PRK14562 97 F---ENKIPSPEELGVPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQD 173 (204)
T ss_pred c---CCCCCCHHHcCCCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHH
Confidence 1 00111 01222233333333 33344689998877665544444443222333 4456667776
Q ss_pred HHHHHHhcc
Q 014710 406 EAQAEASYK 414 (420)
Q Consensus 406 ~~~~~~~~~ 414 (420)
-++..++..
T Consensus 174 ~~r~~lekt 182 (204)
T PRK14562 174 VARSLLERT 182 (204)
T ss_pred HHHHHHHHH
Confidence 666665554
No 445
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=31.54 E-value=3e+02 Score=22.70 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcC
Q 014710 292 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 371 (420)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~ 371 (420)
.++++++......+...+|...-.+......+....++-.+-+.-.+..|...+..++...+.+. .+....-.
T Consensus 46 ~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~-------~L~~~s~~ 118 (142)
T PF04048_consen 46 EELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELK-------ELWQRSQE 118 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-------HHHHHHHH
Confidence 33444444444455555555555555555555555555555555556666666666665555433 44444455
Q ss_pred hHHHHHHHHHHH
Q 014710 372 TENAIKSMTEAV 383 (420)
Q Consensus 372 ~~eA~~~l~~A~ 383 (420)
+.+.+..|.+.-
T Consensus 119 ~~~mi~iL~~Ie 130 (142)
T PF04048_consen 119 YKEMIEILDQIE 130 (142)
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
No 446
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=31.16 E-value=25 Score=29.36 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=20.2
Q ss_pred CCCCCCCcccCC---------------CCCccccCCCCCc-cCHHHHHHH
Q 014710 235 DDGCSGFLLRDS---------------DDKGFTCQQCGLV-RSKEEIKKI 268 (420)
Q Consensus 235 c~~C~~~~~~~~---------------~~~~~~C~~C~~~-~~~~~~~~~ 268 (420)
|..|.+.+.+.+ .+.-|.|+.|++. ..+...+++
T Consensus 94 C~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW~GsH~~~~ 143 (147)
T PF01927_consen 94 CPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYWEGSHWRRM 143 (147)
T ss_pred cCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEecccccHHHH
Confidence 469988654321 1346899999974 233444443
No 447
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=30.99 E-value=3.7e+02 Score=29.15 Aligned_cols=50 Identities=22% Similarity=0.134 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 014710 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL 400 (420)
Q Consensus 350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~ 400 (420)
..|...+.++--+|++.-..|.|++| .+|++++.|...+.|.+-..+.+.
T Consensus 936 ~~~~~aa~aye~~gK~~Ea~gay~sA-~mwrec~si~~q~~~~e~~~~AE~ 985 (1243)
T COG5290 936 LYHISAAKAYEVEGKYIEAHGAYDSA-LMWRECGSISTQEKGYEFNLCAEL 985 (1243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHhhhcchHHHHHHHh
Confidence 45667776666677776666666665 367788889999988775555443
No 448
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=30.93 E-value=37 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=14.3
Q ss_pred CCCCCCCcccCCCCCccccCCCCCc
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGLV 259 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~~ 259 (420)
|..|..... ....+..+|+.||..
T Consensus 3 C~~Cg~~~~-~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 3 CGECGAEVE-LKPGDPIRCPECGHR 26 (32)
T ss_dssp ESSSSSSE--BSTSSTSSBSSSS-S
T ss_pred CCcCCCeeE-cCCCCcEECCcCCCe
Confidence 457775443 233456789999864
No 449
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=30.74 E-value=24 Score=33.25 Aligned_cols=42 Identities=24% Similarity=0.719 Sum_probs=28.3
Q ss_pred CCceeccCCC-CCCccCccccCCC---CCcCCCCCCcccccChhhchh
Q 014710 15 EPYVCVPNNS-SSISRCDGCFASS---NLKKCSACQVVWYCGSNCQKL 58 (420)
Q Consensus 15 ~p~~~~~~~~-~~~~~C~~C~~~~---~~~~C~~C~~~~yCs~~C~~~ 58 (420)
+||+-+|... ....+|..|+..+ ....|..|+.+ ||. +|-.-
T Consensus 317 ~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~-FCl-dCDv~ 362 (378)
T KOG2807|consen 317 KPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNV-FCL-DCDVF 362 (378)
T ss_pred cchhhccccccCCCcceeeeccccCCCCcEEchhccce-eec-cchHH
Confidence 3444444433 3577899996663 37899999996 994 57643
No 450
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=30.63 E-value=24 Score=29.48 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=19.4
Q ss_pred CCccCccccCCC------CCcCCCCCCcccc
Q 014710 26 SISRCDGCFASS------NLKKCSACQVVWY 50 (420)
Q Consensus 26 ~~~~C~~C~~~~------~~~~C~~C~~~~y 50 (420)
...+|.+|.... .+.+||+|....|
T Consensus 111 G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 111 GTLVCENCGHEVELTHPERLPPCPKCGHTEF 141 (146)
T ss_pred ceEecccCCCEEEecCCCcCCCCCCCCCCee
Confidence 467899998872 3789999987654
No 451
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=30.16 E-value=3.9e+02 Score=24.77 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 364 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~ 364 (420)
.++.+.|.++|+..++.. +.+..+.. .-++.++..++.+.|..++++++.. ++ ........+....+
T Consensus 49 ~~d~~~A~~Ife~glk~f-----~~~~~~~~---~Y~~~l~~~~d~~~aR~lfer~i~~----l~-~~~~~~~iw~~~i~ 115 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKF-----PSDPDFWL---EYLDFLIKLNDINNARALFERAISS----LP-KEKQSKKIWKKFIE 115 (280)
T ss_dssp CS-HHHHHHHHHHHHHHH-----TT-HHHHH---HHHHHHHHTT-HHHHHHHHHHHCCT----SS-CHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-----CCCHHHHH---HHHHHHHHhCcHHHHHHHHHHHHHh----cC-chhHHHHHHHHHHH
Confidence 455566889999988653 34443332 2334556788999888887777554 11 11113445566666
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHH
Q 014710 365 LEWFLGDTENAIKSMTEAVEILRI 388 (420)
Q Consensus 365 ~~~~~g~~~eA~~~l~~A~~i~~~ 388 (420)
.-..-|+.+...++.+++.+.+..
T Consensus 116 fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 116 FESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhh
Confidence 666779999988888888876533
No 452
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.12 E-value=39 Score=21.79 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=16.2
Q ss_pred CCCCCCCcccCCCCCccccCCCCCcc
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGLVR 260 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~~~ 260 (420)
|..|....... ..+...|+.||..+
T Consensus 5 C~~Cg~~~~~~-~~~~irC~~CG~rI 29 (44)
T smart00659 5 CGECGRENEIK-SKDVVRCRECGYRI 29 (44)
T ss_pred CCCCCCEeecC-CCCceECCCCCceE
Confidence 45787654332 35678999999653
No 453
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=29.84 E-value=40 Score=35.57 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=24.6
Q ss_pred CCCccCccccCCCCCcCCCCCCc-----ccccChhhchh
Q 014710 25 SSISRCDGCFASSNLKKCSACQV-----VWYCGSNCQKL 58 (420)
Q Consensus 25 ~~~~~C~~C~~~~~~~~C~~C~~-----~~yCs~~C~~~ 58 (420)
....+|..|........|++|+. +.|| .+|-..
T Consensus 13 ~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC-~~CG~~ 50 (645)
T PRK14559 13 NNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHC-PNCGAE 50 (645)
T ss_pred CCCccccccCCCCCCCcCCCCCCCCCcccccc-cccCCc
Confidence 35779999998877678999975 4588 457653
No 454
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.79 E-value=37 Score=31.08 Aligned_cols=44 Identities=20% Similarity=0.739 Sum_probs=37.2
Q ss_pred CCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhh-chhhh
Q 014710 26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE-CQVLS 71 (420)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~E-C~~~~ 71 (420)
....|.-|+....-..|..|+.+ || ..|.-.+|..-++| |+.=+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHl-FC-~~Cl~~~~t~~k~~~CplCR 258 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHL-FC-LSCLLISWTKKKYEFCPLCR 258 (271)
T ss_pred cccceeeeecccCCcccccccch-hh-HHHHHHHHHhhccccCchhh
Confidence 46789999999777889999997 99 77999999877888 87654
No 455
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.72 E-value=6.7e+02 Score=26.57 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710 354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411 (420)
Q Consensus 354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~ 411 (420)
..+..-.+.|.++...|+++-|++...-++++....-|.+.- -.++...++.....+
T Consensus 807 WLa~~~WN~gvL~~~~~~~~~A~KWc~~~L~fan~vTgme~Y-~~qM~~l~~~l~~~~ 863 (872)
T KOG4814|consen 807 WLATYCWNIGVLYIIKDNKSNAIKWCKHSLGFANMVTGMEGY-QEQMYSLWESLASSA 863 (872)
T ss_pred HHHHHHhhhheeeeeccchhhHHHHHHHHHHHHhhhcchhHH-HHHHHHHHHHHHHHH
Confidence 355666677888889999999999999999999888887763 233444444444333
No 456
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=29.47 E-value=34 Score=20.93 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=11.7
Q ss_pred cCCCCcCCceeEEeCC
Q 014710 186 INHSCLPNAVLVFEGR 201 (420)
Q Consensus 186 ~NHSC~PN~~~~f~~~ 201 (420)
-||.|.||+.-+..++
T Consensus 4 ~~~~C~~nA~C~~~~~ 19 (36)
T PF12947_consen 4 NNGGCHPNATCTNTGG 19 (36)
T ss_dssp GGGGS-TTCEEEE-TT
T ss_pred CCCCCCCCcEeecCCC
Confidence 4899999999987655
No 457
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.41 E-value=40 Score=20.06 Aligned_cols=13 Identities=23% Similarity=0.818 Sum_probs=10.0
Q ss_pred CCCccccCCCCCc
Q 014710 247 DDKGFTCQQCGLV 259 (420)
Q Consensus 247 ~~~~~~C~~C~~~ 259 (420)
+...|.|+.|+..
T Consensus 14 ~~~~~~CP~Cg~~ 26 (33)
T cd00350 14 EEAPWVCPVCGAP 26 (33)
T ss_pred CcCCCcCcCCCCc
Confidence 3467999999874
No 458
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=29.40 E-value=6e+02 Score=28.38 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=39.9
Q ss_pred HHHhHHHHHHhcCCCChHHHHHHHHhhHH--HHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710 337 CQLTIPVYQRVYPQFHPLLGLQYYTCGKL--EWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 413 (420)
Q Consensus 337 ~~~~l~~~~~~~g~~hp~~~~~l~~La~~--~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~ 413 (420)
+.++|..++++ |-.+|.-+--||++ |..+|+++|-++-|.-|++-+ ++||..-.+...+-.-..|-.+
T Consensus 535 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 604 (932)
T PRK13184 535 FTQALSEFSYL----HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLY 604 (932)
T ss_pred HHHHHHHHHHh----cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHH
Confidence 34444444444 33344444555554 556799999888777776533 5788776666555544444433
No 459
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=29.28 E-value=23 Score=33.69 Aligned_cols=33 Identities=24% Similarity=0.552 Sum_probs=29.2
Q ss_pred CCCccCccccCCCCCcCCCCCCcccccChhhchh
Q 014710 25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKL 58 (420)
Q Consensus 25 ~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~ 58 (420)
.+...|..|++..+...||+|-. .+||-+|-..
T Consensus 15 ~~~vlCgVClknE~KYkCPRCl~-rtCsLeCskk 47 (390)
T KOG2858|consen 15 LHSVLCGVCLKNEPKYKCPRCLA-RTCSLECSKK 47 (390)
T ss_pred cchhhhhhcccCcccccCcchhh-hheecccccc
Confidence 46789999999999999999988 5999999865
No 460
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.99 E-value=3.1e+02 Score=22.07 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHHhhh-hcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH
Q 014710 287 NHQEVVSTYKMIEKLQKK-LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 365 (420)
Q Consensus 287 ~~~~a~~~~~~~~~~~~~-~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~ 365 (420)
.......++++++..... ---.+++..+++....+.... .+.+++..+ +.+-.|.. .+.-+-..|..
T Consensus 41 ~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l---~~~~IG~~---~A~fY~~wA~~ 108 (126)
T PF08311_consen 41 KQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFL---YSKGIGTK---LALFYEEWAEF 108 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHH---HHHTTSTT---BHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHH---HHcCccHH---HHHHHHHHHHH
Confidence 334455666666655432 122345555555544443222 444444432 33444544 45577788999
Q ss_pred HHhhcChHHHHHHHHHHH
Q 014710 366 EWFLGDTENAIKSMTEAV 383 (420)
Q Consensus 366 ~~~~g~~~eA~~~l~~A~ 383 (420)
+...|++++|.++|++++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999998874
No 461
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=28.81 E-value=2.2e+02 Score=20.31 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhc
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 306 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l 306 (420)
..+...|......|++++|+..|..++......+
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3345556666667999999999999988766544
No 462
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=28.74 E-value=38 Score=23.30 Aligned_cols=33 Identities=27% Similarity=0.531 Sum_probs=21.7
Q ss_pred CccCccccCCC-C-----CcCCCCCC-cccccChhhchhh
Q 014710 27 ISRCDGCFASS-N-----LKKCSACQ-VVWYCGSNCQKLD 59 (420)
Q Consensus 27 ~~~C~~C~~~~-~-----~~~C~~C~-~~~yCs~~C~~~~ 59 (420)
...|..|...+ + .++||+|. ...|=.+.|++..
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g 48 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLG 48 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcC
Confidence 46788887774 2 57888888 3334347788763
No 463
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=28.69 E-value=31 Score=21.10 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=16.2
Q ss_pred ccCccccCCC-------C----CcCCCCCCcccc
Q 014710 28 SRCDGCFASS-------N----LKKCSACQVVWY 50 (420)
Q Consensus 28 ~~C~~C~~~~-------~----~~~C~~C~~~~y 50 (420)
..|.+|.+.. + .+.|+.|+.+++
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 4688888761 1 478999987653
No 464
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=28.49 E-value=38 Score=22.36 Aligned_cols=24 Identities=21% Similarity=0.674 Sum_probs=14.9
Q ss_pred CCCCCC-CcccCCCCCccccCCCCCc
Q 014710 235 DDGCSG-FLLRDSDDKGFTCQQCGLV 259 (420)
Q Consensus 235 c~~C~~-~~~~~~~~~~~~C~~C~~~ 259 (420)
|++|.. ...... .+-|.|-+||.+
T Consensus 22 CPrCG~gvfmA~H-~dR~~CGkCgyT 46 (51)
T COG1998 22 CPRCGPGVFMADH-KDRWACGKCGYT 46 (51)
T ss_pred CCCCCCcchhhhc-CceeEeccccce
Confidence 689983 222222 237999999853
No 465
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=28.48 E-value=1.4e+02 Score=28.66 Aligned_cols=54 Identities=11% Similarity=0.022 Sum_probs=41.1
Q ss_pred hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710 353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 407 (420)
Q Consensus 353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~ 407 (420)
-..|..+.++|.+|.+-|+++.|.-+|-+=..++-... +.||.++.+.....++
T Consensus 32 fRsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEki-pkHrDy~s~k~ek~d~ 85 (424)
T KOG2880|consen 32 FRSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKI-PKHRDYRSVKPEKEDI 85 (424)
T ss_pred hhhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhc-ccCcchhhhchhHHHH
Confidence 45678888999999999999999999999877776642 6788776554444443
No 466
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=28.45 E-value=27 Score=32.94 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=18.7
Q ss_pred ccCCCCCCCc-ccCCCCCccccCCCCCccC
Q 014710 233 CKDDGCSGFL-LRDSDDKGFTCQQCGLVRS 261 (420)
Q Consensus 233 C~c~~C~~~~-~~~~~~~~~~C~~C~~~~~ 261 (420)
=.|.+|..-. ++.-....|+|++||..+.
T Consensus 247 TAC~rC~t~y~le~A~~~~wrCpkCGg~ik 276 (403)
T COG1379 247 TACSRCYTRYSLEEAKSLRWRCPKCGGKIK 276 (403)
T ss_pred HHHHHhhhccCcchhhhhcccCcccccchh
Confidence 3467887433 2333456799999997544
No 467
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=28.40 E-value=43 Score=27.03 Aligned_cols=23 Identities=4% Similarity=-0.132 Sum_probs=18.8
Q ss_pred CCccCccccCC---C--CCcCCCCCCcc
Q 014710 26 SISRCDGCFAS---S--NLKKCSACQVV 48 (420)
Q Consensus 26 ~~~~C~~C~~~---~--~~~~C~~C~~~ 48 (420)
....|..|.++ + .++.||.|+..
T Consensus 8 tKr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred ccccCCCcCccccccCCCCccCCCcCCc
Confidence 47899999998 2 37899999876
No 468
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=28.17 E-value=32 Score=29.81 Aligned_cols=25 Identities=20% Similarity=0.575 Sum_probs=19.3
Q ss_pred ccCCCCCCCcccCCCCCccccCCCCCc
Q 014710 233 CKDDGCSGFLLRDSDDKGFTCQQCGLV 259 (420)
Q Consensus 233 C~c~~C~~~~~~~~~~~~~~C~~C~~~ 259 (420)
=.|++|.+++.. +.....|++|+..
T Consensus 150 A~CsrC~~~L~~--~~~~l~Cp~Cg~t 174 (188)
T COG1096 150 ARCSRCRAPLVK--KGNMLKCPNCGNT 174 (188)
T ss_pred EEccCCCcceEE--cCcEEECCCCCCE
Confidence 346799998877 5567889999964
No 469
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.04 E-value=21 Score=33.30 Aligned_cols=26 Identities=27% Similarity=0.857 Sum_probs=21.4
Q ss_pred CcCCCC-CCcccccChhhchhhhhhhHhhchh
Q 014710 39 LKKCSA-CQVVWYCGSNCQKLDWKLHRLECQV 69 (420)
Q Consensus 39 ~~~C~~-C~~~~yCs~~C~~~~~~~H~~EC~~ 69 (420)
.+.|++ |.++ || ++|.+. ||.-||..
T Consensus 335 kvtC~~gCgf~-FC-R~C~e~---yh~geC~~ 361 (446)
T KOG0006|consen 335 KVTCEGGCGFA-FC-RECKEA---YHEGECSA 361 (446)
T ss_pred cccCCCCchhH-hH-HHHHhh---hcccccee
Confidence 577885 9996 99 889874 99999973
No 470
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=28.00 E-value=2e+02 Score=25.43 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=37.8
Q ss_pred hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHH
Q 014710 282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAY 336 (420)
Q Consensus 282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~ 336 (420)
+..+.+.++++.++.+++++. .+.+..=.++...|+.++...|+++.|.-+
T Consensus 150 yY~krD~~Kt~~ll~~~L~l~----~~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 150 YYTKRDPEKTIQLLLRALELS----NPDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHccCHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 344568889999999998764 344333456667899999999999998654
No 471
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=27.99 E-value=28 Score=22.08 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=17.6
Q ss_pred CCCCCCCc-ccCCCCCccccCCCCCccC
Q 014710 235 DDGCSGFL-LRDSDDKGFTCQQCGLVRS 261 (420)
Q Consensus 235 c~~C~~~~-~~~~~~~~~~C~~C~~~~~ 261 (420)
|+.|.+.. ..+.....+.|..||..++
T Consensus 3 Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl~ 30 (43)
T PF08271_consen 3 CPNCGSKEIVFDPERGELVCPNCGLVLE 30 (43)
T ss_dssp BTTTSSSEEEEETTTTEEEETTT-BBEE
T ss_pred CcCCcCCceEEcCCCCeEECCCCCCEee
Confidence 67888643 3344566789999997654
No 472
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=27.80 E-value=2.4e+02 Score=30.20 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=38.0
Q ss_pred hcCCCChHHHHHHHHhhH------HHHhhcChHHHHHHHH------HHHHHHHHhcCCCCchH
Q 014710 347 VYPQFHPLLGLQYYTCGK------LEWFLGDTENAIKSMT------EAVEILRITHGTNSPFM 397 (420)
Q Consensus 347 ~~g~~hp~~~~~l~~La~------~~~~~g~~~eA~~~l~------~A~~i~~~~~G~~h~~~ 397 (420)
+-.++.|.++.+|.+++. ++.+.|.++.|+.+|. .|.++.+..+||+...+
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~ 825 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATIS 825 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHH
Confidence 345677888888877754 3456688888888865 47888999999988654
No 473
>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins.
Probab=27.77 E-value=26 Score=24.10 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=22.5
Q ss_pred CCccCccccCCCC--CcCCCCCCcccccChhhchhhh
Q 014710 26 SISRCDGCFASSN--LKKCSACQVVWYCGSNCQKLDW 60 (420)
Q Consensus 26 ~~~~C~~C~~~~~--~~~C~~C~~~~yCs~~C~~~~~ 60 (420)
....|..|-+.+. .-..-=-+...|||.+|+.+..
T Consensus 15 FL~~C~~C~k~L~~~~DiymYrGd~aFCS~ECR~~qi 51 (58)
T PF04570_consen 15 FLSFCYLCKKKLDPGKDIYMYRGDKAFCSEECRSQQI 51 (58)
T ss_pred HHHHHHccCCCCCCCCCeeeeccccccccHHHHHHHH
Confidence 4678999988843 1122222445699999998743
No 474
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.49 E-value=36 Score=18.51 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=12.4
Q ss_pred cCccccCCCC--CcCCCCCCc
Q 014710 29 RCDGCFASSN--LKKCSACQV 47 (420)
Q Consensus 29 ~C~~C~~~~~--~~~C~~C~~ 47 (420)
.|.+|.++.+ ...|+.|..
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 4777877743 556777764
No 475
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=26.72 E-value=31 Score=25.04 Aligned_cols=22 Identities=27% Similarity=0.794 Sum_probs=10.2
Q ss_pred CccCccccCCC---CCcCCCCCCcc
Q 014710 27 ISRCDGCFASS---NLKKCSACQVV 48 (420)
Q Consensus 27 ~~~C~~C~~~~---~~~~C~~C~~~ 48 (420)
...|+.||+.. ....||.|+..
T Consensus 9 vlrC~aCf~~t~~~~k~FCp~CGn~ 33 (73)
T PF08772_consen 9 VLRCHACFKITKDMTKQFCPKCGNA 33 (73)
T ss_dssp EEE-SSS--EES-SS--S-SSS--S
T ss_pred eEEccccccCcCCCCceeCcccCCC
Confidence 46899999883 46778888753
No 476
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=26.71 E-value=3.9e+02 Score=22.49 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=31.8
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 014710 285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 340 (420)
Q Consensus 285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 340 (420)
.++.+++..++..+ ++|.|..+.+- .--+-+++..|+|.+|+.+.+.+
T Consensus 23 ~~d~~D~e~lLdAL-----rvLrP~~~e~d---~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 23 SADPYDAQAMLDAL-----RVLRPNLKELD---MFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred cCCHHHHHHHHHHH-----HHhCCCccccc---hhHHHHHHHcCCHHHHHHHHHhh
Confidence 56777776665554 55667665422 22344778889999999987765
No 477
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.64 E-value=4.7e+02 Score=26.82 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHh----hcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710 311 VNLMQTREKLIKILMEL----EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386 (420)
Q Consensus 311 ~~~~~~~~~L~~~~~~~----g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~ 386 (420)
.++.++++.+...+..+ |-..++.-..+--+... -..+.-.+-+|.+|...++|.||+.+|.+|..-+
T Consensus 381 qdl~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~--------~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~syl 452 (593)
T KOG2460|consen 381 QDLERLYDSIIKNLSEIMELPGLESDKELQSQLELKKL--------YFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYL 452 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcCCCCchHHHHH-HHHHHHHHHHhcc
Q 014710 387 RITHGTNSPFMKELI-LKLEEAQAEASYK 414 (420)
Q Consensus 387 ~~~~G~~h~~~~~~~-~~l~~~~~~~~~~ 414 (420)
+...+.-..+-..+. ..+.+...+++..
T Consensus 453 qe~~~~l~s~~e~l~~~~~~eli~el~k~ 481 (593)
T KOG2460|consen 453 QEVNSELESFKESLLPLLLLELISELQKR 481 (593)
T ss_pred HHHHhhhhchhhcccchHHHHHHHHHHHH
No 478
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=26.55 E-value=2.3e+02 Score=27.39 Aligned_cols=40 Identities=25% Similarity=0.160 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
..+-..+.+++..|..+.+.+++-+|+..|+.|...++..
T Consensus 238 K~~~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 277 (348)
T cd09242 238 KAHYYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEA 277 (348)
T ss_pred HHHHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888899999999999998877754
No 479
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=26.55 E-value=2.5e+02 Score=20.28 Aligned_cols=44 Identities=9% Similarity=-0.015 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhc-CCCChhHHH
Q 014710 272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY-HPFSVNLMQ 315 (420)
Q Consensus 272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l-~~~h~~~~~ 315 (420)
.-.++.+|......|++++|+.+|...+.....++ ...++..-.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~ 50 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKE 50 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Confidence 34455566666677999999999999988766544 344554433
No 480
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=26.53 E-value=30 Score=22.38 Aligned_cols=31 Identities=29% Similarity=0.663 Sum_probs=24.0
Q ss_pred cCccccCCCC--CcCCCCCCcccccChhhchhhh
Q 014710 29 RCDGCFASSN--LKKCSACQVVWYCGSNCQKLDW 60 (420)
Q Consensus 29 ~C~~C~~~~~--~~~C~~C~~~~yCs~~C~~~~~ 60 (420)
.|+.|.+... ...|..|...-.| .+|.....
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC-~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLC-SSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCH-HHHHCcCc
Confidence 5899998733 6789999977789 66887654
No 481
>COG3483 TDO2 Tryptophan 2,3-dioxygenase (vermilion) [Amino acid transport and metabolism]
Probab=26.51 E-value=4.7e+02 Score=23.37 Aligned_cols=103 Identities=7% Similarity=-0.024 Sum_probs=58.5
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCC-------hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc
Q 014710 276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-------VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 348 (420)
Q Consensus 276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h-------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 348 (420)
+..|.+...+|+..-|.+++.++..++++....-+ ......+..|++..+-+...=.++++.. ......+
T Consensus 49 l~aA~~llr~~~~~pa~kmL~Rv~ri~eql~~aw~Vl~TMTp~dyl~fR~~lgqsSGFQS~qyR~iEfll---Gnkn~al 125 (262)
T COG3483 49 LRAARDLLRADDLPPALKMLARVSRIFEQLNQAWDVLATMTPADYLDFRDALGQSSGFQSYQYREIEFLL---GNKNAAL 125 (262)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcccccchHHHHHHHHHHH---cCcchhh
Confidence 34455666778888889999888887765432211 1233344444444433222223333322 1122222
Q ss_pred CCCChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 381 (420)
Q Consensus 349 g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 381 (420)
=..|...+..+-.|..++....-|++|+.++.+
T Consensus 126 l~pH~hR~e~~~~L~aal~~pslydeairllar 158 (262)
T COG3483 126 LKPHKHRAELLARLKAALETPSLYDEAIRLLAR 158 (262)
T ss_pred hCccccCHHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 244777888888888887777777777776653
No 482
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=26.45 E-value=42 Score=28.94 Aligned_cols=30 Identities=33% Similarity=0.603 Sum_probs=18.6
Q ss_pred CccccCCCCCCCcccCC-CCCccccCCCCCccC
Q 014710 230 GYRCKDDGCSGFLLRDS-DDKGFTCQQCGLVRS 261 (420)
Q Consensus 230 ~~~C~c~~C~~~~~~~~-~~~~~~C~~C~~~~~ 261 (420)
.|.| +.|.....-+. -..+|.|+.||....
T Consensus 113 ~y~C--~~~~~r~sfdeA~~~~F~Cp~Cg~~L~ 143 (176)
T COG1675 113 YYVC--PNCHVKYSFDEAMELGFTCPKCGEDLE 143 (176)
T ss_pred ceeC--CCCCCcccHHHHHHhCCCCCCCCchhh
Confidence 4778 67764332221 145799999997643
No 483
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=26.43 E-value=3.4e+02 Score=23.07 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHH
Q 014710 314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEA 382 (420)
Q Consensus 314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A 382 (420)
...+..++.+-...++.+++..+...+ +++- |.....-.--|.++...|++.+|+.+|++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~AL-----rvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDAL-----RVLR---PEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH-----HHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444555555667777776654433 2333 334444455688888999999999988874
No 484
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=26.39 E-value=3.9e+02 Score=27.53 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=32.1
Q ss_pred hcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHH
Q 014710 328 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 380 (420)
Q Consensus 328 g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~ 380 (420)
|+--.|+.-|..++.+ .|..-.+.+.|+..+.+++++.+|+....
T Consensus 425 ~d~~~AlrDch~Alrl--------n~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 425 GDSYLALRDCHVALRL--------NPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred ccHHHHHHhHHhhccC--------ChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 4444566655555443 67777888899999999999888877654
No 485
>PRK05685 fliS flagellar protein FliS; Validated
Probab=26.15 E-value=3.3e+02 Score=22.09 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=29.9
Q ss_pred HHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH-HHHHHHhhHHHH
Q 014710 322 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTCGKLEW 367 (420)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~~l~~La~~~~ 367 (420)
......|+++++.....++..+...+-+.-.+.. |..-.+|..+|.
T Consensus 43 ~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~ 89 (132)
T PRK05685 43 KLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYD 89 (132)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHH
Confidence 3455669999999888888888777766444433 344444545544
No 486
>PF14369 zf-RING_3: zinc-finger
Probab=25.71 E-value=60 Score=19.73 Aligned_cols=27 Identities=26% Similarity=0.699 Sum_probs=16.5
Q ss_pred CccccCCCCCCCcccCCC-CCccccCCCCC
Q 014710 230 GYRCKDDGCSGFLLRDSD-DKGFTCQQCGL 258 (420)
Q Consensus 230 ~~~C~c~~C~~~~~~~~~-~~~~~C~~C~~ 258 (420)
.|+|. .|...+...+. +....|+.|+.
T Consensus 2 ~ywCh--~C~~~V~~~~~~~~~~~CP~C~~ 29 (35)
T PF14369_consen 2 RYWCH--QCNRFVRIAPSPDSDVACPRCHG 29 (35)
T ss_pred CEeCc--cCCCEeEeCcCCCCCcCCcCCCC
Confidence 46675 78876655332 22335999985
No 487
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=25.69 E-value=62 Score=31.12 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=65.6
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHhhhh-----------cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHh
Q 014710 279 TLALTSCGNHQEVVSTYKMIEKLQKKL-----------YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 347 (420)
Q Consensus 279 a~~~~~~g~~~~a~~~~~~~~~~~~~~-----------l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~ 347 (420)
....+..+++..|..-|.+.+...... ..+........+.+++..-..++.+..|+..+-.++.
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~----- 303 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR----- 303 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc-----
Confidence 344556677888877777776543210 1122233344555566666667777777666554443
Q ss_pred cCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 384 (420)
Q Consensus 348 ~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~ 384 (420)
..+...-.++..+..+..+.++++|+.-+..|..
T Consensus 304 ---~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 304 ---DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred ---cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 6677888899999999999999999988888754
No 488
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.55 E-value=2.4e+02 Score=20.54 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=22.8
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHhhh
Q 014710 274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 304 (420)
Q Consensus 274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~ 304 (420)
.+.+.|......|++++|+.+|..++.....
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3445555556678999999999999886543
No 489
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=25.37 E-value=2.4e+02 Score=19.67 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhh
Q 014710 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 304 (420)
Q Consensus 273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~ 304 (420)
-.+...|......|++++|++.|...+.....
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34456677777789999999999998776543
No 490
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.32 E-value=5.4e+02 Score=23.67 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=48.9
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHH-HHHHHHHHhHHHHHHh--cCCC
Q 014710 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWK-EALAYCQLTIPVYQRV--YPQF 351 (420)
Q Consensus 275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~-~A~~~~~~~l~~~~~~--~g~~ 351 (420)
+.+-|..+.+.++...+-++..-+++.+++.-.+.+ -.....|+.++...+.-+ +-.++..+++.-. +. ++.-
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~G 88 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT-
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCC
Confidence 334445556667777777766666555544211112 223355666555543221 2333444444433 21 1223
Q ss_pred ChHHHHHHHHhhHHHHhhcChHHHHHHHH
Q 014710 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMT 380 (420)
Q Consensus 352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~ 380 (420)
||. .+..+|..+++.|++.+|+.++-
T Consensus 89 dp~---LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPE---LHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HH---HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHH---HHHHHHHHHHhhccHHHHHHHHH
Confidence 433 45667888888889988888874
No 491
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=25.18 E-value=22 Score=29.73 Aligned_cols=28 Identities=29% Similarity=0.831 Sum_probs=18.0
Q ss_pred cCccccCC--CCCcCCCCCCcccccChhhch
Q 014710 29 RCDGCFAS--SNLKKCSACQVVWYCGSNCQK 57 (420)
Q Consensus 29 ~C~~C~~~--~~~~~C~~C~~~~yCs~~C~~ 57 (420)
.|.+|+-. ..++.|..|+. +||+-..-.
T Consensus 2 aC~YCG~~~p~~vv~C~~c~k-WFCNg~~~~ 31 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNK-WFCNGRGNT 31 (152)
T ss_dssp S-TTT----CCCEEEETTTTE-EEES--TTS
T ss_pred CccccCCCCcccEeEcCCCCc-EeecCCCCC
Confidence 59999966 45899999999 799887653
No 492
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.06 E-value=6.6e+02 Score=28.35 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhHH--HHHH---------------hcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHH
Q 014710 318 EKLIKILMELEDWKEALAYCQLTIP--VYQR---------------VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 380 (420)
Q Consensus 318 ~~L~~~~~~~g~~~~A~~~~~~~l~--~~~~---------------~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~ 380 (420)
..|+..+..+|+|..|++-++++-. .|+. +.|-.-..-+..+-+|-..|...|-++|-+.+++
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 3455666677899888888776643 2332 2344444556677777777888888888888887
Q ss_pred HHHHHHHHhcC
Q 014710 381 EAVEILRITHG 391 (420)
Q Consensus 381 ~A~~i~~~~~G 391 (420)
-++.+-+...|
T Consensus 1304 a~LGLERAHMg 1314 (1666)
T KOG0985|consen 1304 AGLGLERAHMG 1314 (1666)
T ss_pred hhhchhHHHHH
Confidence 77665554433
No 493
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=24.95 E-value=4e+02 Score=22.09 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHH
Q 014710 254 QQCGLVRSKEEIKKIASEVNILSKKTLA-LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 332 (420)
Q Consensus 254 ~~C~~~~~~~~~~~~~~~~~~l~~~a~~-~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~ 332 (420)
+.|+.....-+.-.+........+.|.. +..+|+-++.-+++..+.+ ++..-...+..++.+|..+|+..+
T Consensus 67 s~C~NlKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k--------n~~~~p~~L~kia~Ay~klg~~r~ 138 (161)
T PF09205_consen 67 SKCGNLKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKK--------NEEINPEFLVKIANAYKKLGNTRE 138 (161)
T ss_dssp GG-S-THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHH
T ss_pred hhhcchHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhh--------ccCCCHHHHHHHHHHHHHhcchhh
Q ss_pred HHHHHHHh
Q 014710 333 ALAYCQLT 340 (420)
Q Consensus 333 A~~~~~~~ 340 (420)
|-++.+++
T Consensus 139 ~~ell~~A 146 (161)
T PF09205_consen 139 ANELLKEA 146 (161)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 494
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=24.95 E-value=32 Score=22.31 Aligned_cols=11 Identities=18% Similarity=0.990 Sum_probs=9.2
Q ss_pred ccccChhhchh
Q 014710 48 VWYCGSNCQKL 58 (420)
Q Consensus 48 ~~yCs~~C~~~ 58 (420)
.+|||+.|+..
T Consensus 25 Y~FCS~~C~~~ 35 (47)
T PF04945_consen 25 YYFCSEGCKEK 35 (47)
T ss_dssp EEESSHHHHHH
T ss_pred EEEcCHHHHHH
Confidence 46999999975
No 495
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=24.90 E-value=26 Score=21.65 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=16.1
Q ss_pred CccccCCC---CCcCCCCCCcccccChhhchh
Q 014710 30 CDGCFASS---NLKKCSACQVVWYCGSNCQKL 58 (420)
Q Consensus 30 C~~C~~~~---~~~~C~~C~~~~yCs~~C~~~ 58 (420)
|++|.+.. |.+.=-+=+.-+||+..|.++
T Consensus 1 Cd~CG~~I~~eP~~~k~~~~~y~fCC~tC~~~ 32 (37)
T PF08394_consen 1 CDYCGGEITGEPIVVKIGNKVYYFCCPTCLSQ 32 (37)
T ss_pred CCccCCcccCCEEEEEECCeEEEEECHHHHHH
Confidence 67777763 111111333446888888865
No 496
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=24.82 E-value=8.9e+02 Score=26.46 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=48.5
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh---hcHHHHHH-HHHHhHHHHHHhcCCC--
Q 014710 278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALA-YCQLTIPVYQRVYPQF-- 351 (420)
Q Consensus 278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~---g~~~~A~~-~~~~~l~~~~~~~g~~-- 351 (420)
.|......|.|++|+.+|..+-+ .+..+.-+-..|+++.... +...++.. +...+.++|+ .++..
T Consensus 628 vA~~a~~~G~~~~sI~LY~lag~--------yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~-~~~~~~~ 698 (835)
T KOG2168|consen 628 VASEADEDGLFEDAILLYHLAGD--------YDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYE-SNKGDSA 698 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHH-hccCcch
Confidence 35556678999999999877633 2333333344555555443 22333333 2333444443 33322
Q ss_pred --ChHHHHHHHHhhHHHH--hhcChHHHHHHHHH
Q 014710 352 --HPLLGLQYYTCGKLEW--FLGDTENAIKSMTE 381 (420)
Q Consensus 352 --hp~~~~~l~~La~~~~--~~g~~~eA~~~l~~ 381 (420)
+..+...+..+.++.- ..|++++|...++.
T Consensus 699 ~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~ 732 (835)
T KOG2168|consen 699 KVVVKTLSLLLDLVSFFDLYHNGEWEEALSILEH 732 (835)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444432 35667776666553
No 497
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.77 E-value=1.6e+02 Score=29.31 Aligned_cols=80 Identities=18% Similarity=0.070 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH-------HHhhc---ChHHHHHHHHHHHHHH
Q 014710 317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL-------EWFLG---DTENAIKSMTEAVEIL 386 (420)
Q Consensus 317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~-------~~~~g---~~~eA~~~l~~A~~i~ 386 (420)
++.-+.+.+....|.+|+.....+ +..+....+.....-.++|.+ |+.+. ....|..-|.+|-+.+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleA----De~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEA----DESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 356667777888888888765543 344445555555555555544 33333 4567999999999999
Q ss_pred HHhcCCCCchHHHH
Q 014710 387 RITHGTNSPFMKEL 400 (420)
Q Consensus 387 ~~~~G~~h~~~~~~ 400 (420)
++.||.+|.-...+
T Consensus 242 ~~syGenl~Rl~~l 255 (568)
T KOG2561|consen 242 ERSYGENLSRLRSL 255 (568)
T ss_pred hhhhhhhhHhhhhc
Confidence 99999999765443
No 498
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=24.65 E-value=3.4e+02 Score=21.21 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=17.4
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHh
Q 014710 366 EWFLGDTENAIKSMTEAVEILRIT 389 (420)
Q Consensus 366 ~~~~g~~~eA~~~l~~A~~i~~~~ 389 (420)
+.+.|++++|...+++|-+.+...
T Consensus 29 ~Ak~g~f~~A~~~i~eA~~~l~eA 52 (105)
T COG1447 29 AAKEGDFEEAEELIQEANDALNEA 52 (105)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHH
Confidence 346789999888888877755443
No 499
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=24.56 E-value=63 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=12.1
Q ss_pred CCCCCCcccCCCCCccccCCCCC
Q 014710 236 DGCSGFLLRDSDDKGFTCQQCGL 258 (420)
Q Consensus 236 ~~C~~~~~~~~~~~~~~C~~C~~ 258 (420)
..|...+.+......|.|+.||+
T Consensus 11 tSCg~~i~~~~~~~~F~CPnCG~ 33 (59)
T PRK14890 11 TSCGIEIAPREKAVKFLCPNCGE 33 (59)
T ss_pred cCCCCcccCCCccCEeeCCCCCC
Confidence 45555554444344556666654
No 500
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=24.40 E-value=63 Score=19.08 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=17.7
Q ss_pred CCCCCCCcccCCCCCccccCCCCC
Q 014710 235 DDGCSGFLLRDSDDKGFTCQQCGL 258 (420)
Q Consensus 235 c~~C~~~~~~~~~~~~~~C~~C~~ 258 (420)
|..|...+.-++....++|..|..
T Consensus 4 C~~C~t~L~yP~gA~~vrCs~C~~ 27 (31)
T TIGR01053 4 CGGCRTLLMYPRGASSVRCALCQT 27 (31)
T ss_pred cCCCCcEeecCCCCCeEECCCCCe
Confidence 557777666666667899999975
Done!