BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014711
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From
The Hyperthermophilic Bacterium Thermotoga Maritima
Length = 398
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
EKPY ++GG + +K + L + D ++ G M F + ALG V VE+ D
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
A +L++ A++K + I+ P D + P + + GIP+GW +DIGP ++E
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
++ K V+W GP+ ++ G ++ + +++ V G + A+ K
Sbjct: 305 QKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNK--- 361
Query: 184 SIFGL-----NMVESGSAVWEFLKGRMLPGVSAL 212
FGL ++ G A EFL+G+ LPG++++
Sbjct: 362 --FGLEDKFSHVSTGGGASLEFLEGKELPGIASM 393
>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|B Chain B, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|C Chain C, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|D Chain D, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|16PK|A Chain A, Phosphoglycerate Kinase From Trypanosoma Brucei
Bisubstrate Analog
Length = 415
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 2/209 (0%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
+P AI+GG + +K L + R D L+ G M++ + A G + E+ + A
Sbjct: 205 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 264
Query: 67 SDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
L++ A D+ + ++ P D C T+ + I IP+G +DIGP+++E+ T
Sbjct: 265 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 324
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
I KCK IW GP+ YS G + + + + +++IG + A++S
Sbjct: 325 IGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEA 384
Query: 186 FGLNMVES-GSAVWEFLKGRMLPGVSALD 213
++ V + G A E L+G+ LPGV+ LD
Sbjct: 385 KRMSHVSTGGGASLELLEGKTLPGVTVLD 413
>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus
Anthracis
Length = 394
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 3/209 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+AAIIGG + +K + L + D LI G +++ + ALG + L E +
Sbjct: 186 ERPFAAIIGGAKVKDKIGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSLCEDDKIEL 245
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A + Q A++K + P D T + +I IP WE VDIGP++ E
Sbjct: 246 AKEFXQLAKEKGVNFYXPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYAD 305
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
I K V+W GP + ++ G +K G ++GT +V + G + A+ K +
Sbjct: 306 VIKNSKLVVWNGPXGVFEXTPFAEG-TKAVGQALADAEGTYSV-IGGGDSAAAVEKFGXA 363
Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALD 213
++ G A EF +G+ LPGV L+
Sbjct: 364 DKXSHISTGGGASLEFXEGKELPGVVCLN 392
>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
pdb|1V6S|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
Length = 390
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+PYA ++GG + +K + L R D L+ G M+F + ALG V LVE+ D
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A DL+ A + + P+D +I + +FP+ IP + +DIGP++ E
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS-S 183
+ + V W GP+ + G + G +G V V G + A+ ++
Sbjct: 303 ALEGARTVFWNGPMGVFEVPPFDEG-TLAVGQAIAALEGAFTV-VGGGDSVAAVNRLGLK 360
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
FG ++ G A EFL+ LPG+ L+
Sbjct: 361 ERFG-HVSTGGGASLEFLEKGTLPGLEVLE 389
>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate
Kinase In The Open Conformation
Length = 390
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+PYA ++GG + +K + L R D L+ G M+F + ALG V LVE+ D
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A DL+ A + + P+D +I + +FP+ IP + +DIGP++ E
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS-S 183
+ + V W GP+ + G + G +G V V G + A+ ++
Sbjct: 303 ALEGARTVFWNGPMGVFEVPPFDEG-TLAVGQAIAALEGAFTV-VGGGDSVAAVNRLGLK 360
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
FG ++ G A EFL+ LPG+ L+
Sbjct: 361 ERFG-HVSTGGGASLEFLEKGTLPGLEVLE 389
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 3/209 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+ AIIGG + +K + L + D LI G +++ + ALG V L+E+ +
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A ++ A++K + P D + + ++ P IP W +DIGP++ E
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
I + K V+W GP+ +++G +K + T +V + G + A+ K +
Sbjct: 306 VIRESKLVVWNGPMGVFEMDAFAHG-TKAIAEALAEALDTYSV-IGGGDSAAAVEKFGLA 363
Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALD 213
++ G A EF++G+ LPGV AL+
Sbjct: 364 DKMDHISTGGGASLEFMEGKQLPGVVALE 392
>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Adp
pdb|3C39|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C39|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C3A|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3A|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3B|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3B|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3C|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
pdb|3C3C|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
Length = 420
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 208 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 267
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 268 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 327
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+T+ K+++W GPV ++ G L + K + C + G AK +
Sbjct: 328 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 387
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ ++ G A E L+G++LPGV AL
Sbjct: 388 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 417
>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Magnesium Trifluoride
pdb|2WZC|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Aluminium Tetrafluoride
pdb|2X13|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
3phosphoglycerate
pdb|2X15|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
1,3- Bisphosphoglycerate
Length = 416
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+T+ K+++W GPV ++ G L + K + C + G AK +
Sbjct: 324 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ ++ G A E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413
>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Binary Complex With 3pg
pdb|2XE7|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Adp
pdb|2XE8|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Amp-Pnp
pdb|2YBE|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride At 2.0 A Resolution
Length = 417
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+T+ K+++W GPV ++ G L + K + C + G AK +
Sbjct: 325 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 384
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ ++ G A E L+G++LPGV AL
Sbjct: 385 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 414
>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
pdb|2Y3I|D Chain D, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
Length = 416
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+T+ K+++W GPV ++ G L + K + C + G AK +
Sbjct: 325 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 384
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ ++ G A E L+G++LPGV AL
Sbjct: 385 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 414
>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp
pdb|1VJD|A Chain A, Structure Of Pig Muscle Pgk Complexed With Atp
Length = 416
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 3/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++ +
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGSK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+ + + K+++W GPV ++ G L + K + C + G AK +
Sbjct: 324 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ ++ G A E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 5/210 (2%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
+P+ AI+GG + +K + L + D +I G M+F L + + +K +
Sbjct: 133 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 192
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
L++ A+ K + ++ P DF N + GIP GW+ +D GP S +
Sbjct: 193 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 252
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
+T+ K K ++W GP +++ G L + K S N +IG +AK
Sbjct: 253 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKYG 311
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
++ V + G A E L+G+ LPGV+ L
Sbjct: 312 VTDKISHVSTGGGASLELLEGKELPGVAFL 341
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 5/210 (2%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
+P+ AI+GG + +K + L + D +I G M+F L + + +K +
Sbjct: 203 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 262
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
L++ A+ K + ++ P DF N + GIP GW+ +D GP S +
Sbjct: 263 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 322
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
+T+ K K ++W GP +++ G L + K S N +IG +AK
Sbjct: 323 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKYG 381
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
++ V + G A E L+G+ LPGV+ L
Sbjct: 382 VTDKISHVSTGGGASLELLEGKELPGVAFL 411
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 5/211 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
++P AI+GG + +K + L + D +I G M++ L + + L ++ +
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS--HGIPDGWEPVDIGPRSVEEI 122
++++ A+ K++ I P DF N F + GIPD W +D GP+S+E
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
I K VIW GP ++ G+ + ++ +V++ +T++G ++ +
Sbjct: 326 KDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 384
Query: 183 SSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
+ ++ V + G A E L+G+ LPGV AL
Sbjct: 385 NKKNEISHVSTGGGASLELLEGKELPGVLAL 415
>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase
Ternary Complex With Amp-Pcp And 3pg
Length = 416
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
+L+ A + I P DF H + + GIP GW +D GP S ++
Sbjct: 264 IVKNLMSKAEKNGVKITLPVDFVTADKFDEHAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+ + + K+++W GPV ++ G L + K + C + G AK +
Sbjct: 324 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ ++ G A E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413
>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Amp-Pcp And 3pg
Length = 416
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + + ++ + + + +I G M+F + L + + L ++
Sbjct: 204 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+T+ K+++W GPV ++ G L + K + C + G AK +
Sbjct: 324 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ ++ G A E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413
>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Adp, 3pg And Aluminium Trifluoride
Length = 417
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + + ++ + + + +I G M+F + L + + L ++
Sbjct: 205 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+T+ K+++W GPV ++ G L + K + C + G AK +
Sbjct: 325 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 384
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ ++ G A E L+G++LPGV AL
Sbjct: 385 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 414
>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate
Kinase
Length = 403
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 10/211 (4%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
KP AI+GG + +K + L + D +I G M++ + A G + L+E+ D A
Sbjct: 199 KPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFA 258
Query: 67 SDLIQFARDKHITILYPKDFWCTK-IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
DL++ DK I+ P D K + ++ + PS IP E +DIGP +V+
Sbjct: 259 KDLLEKHGDK---IVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADE 315
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVI--GSMACKAIAKVSS 183
+ V+W GP+ ++SN A G+ ++ +T+I G A AI+
Sbjct: 316 LEGAHTVVWNGPMGVF---EFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFE 372
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214
+ F ++ G A E+L+G+ LPG+ A++
Sbjct: 373 NDF-THISTGGGASLEYLEGKELPGIKAINN 402
>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg
And Mgadp
Length = 413
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 5/211 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS---HGIPDGWEPVDIGPRSVEE 121
+L+ A + I P DF T Q +I + GIP GW +D GP+S +
Sbjct: 261 IVKNLMSKAAANGVKITLPVDF-VTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAK 319
Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
+ + + K+++W GPV ++ G L + K + C + G AK
Sbjct: 320 YSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 379
Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
++ ++ G A E L+G++LPGV AL
Sbjct: 380 NTEDNVSHVSTGGGASLELLEGKVLPGVDAL 410
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm
Resolution
Length = 416
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 5/210 (2%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
+P+ AI+GG + +K + L + D +I G M+F L + + +K
Sbjct: 204 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAVGPE 263
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
+ L++ A+ K + ++ P DF N + GIP GW+ +D GP S +
Sbjct: 264 IAKLMEKAKAKGVEVVLPVDFIIADAFSASANTKTVTDKEGIPAGWQGLDNGPESRKLFA 323
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
+T+ K ++W GP +++ G L + K S N +IG +AK
Sbjct: 324 ATVAKATVILWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKYG 382
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
++ V + G A E L+G+ LPGV+ L
Sbjct: 383 VTDKISHVSTGGGASLELLEGKELPGVAFL 412
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 5/211 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
++P AI+GG + +K + L + D I G ++ L + L ++ +
Sbjct: 212 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 271
Query: 65 AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
++ + A+ K++ I P DF ++ N + GIPD W +D GP+S+E
Sbjct: 272 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 331
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
I K VIW GP ++ G+ + ++ +V++ +T++G ++ +
Sbjct: 332 KDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 390
Query: 183 SSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
+ ++ V + G A E L+G+ LPGV AL
Sbjct: 391 NKKNEISHVSTGGGASLELLEGKELPGVLAL 421
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 5/211 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
++P AI+GG + +K + L + D I G ++ L + L ++ +
Sbjct: 213 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 272
Query: 65 AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
++ + A+ K++ I P DF ++ N + GIPD W +D GP+S+E
Sbjct: 273 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 332
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
I K VIW GP ++ G+ + ++ +V++ +T++G ++ +
Sbjct: 333 KDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 391
Query: 183 SSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
+ ++ V + G A E L+G+ LPGV AL
Sbjct: 392 NKKNEISHVSTGGGASLELLEGKELPGVLAL 422
>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni.
pdb|3Q3V|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni
Length = 403
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 4/207 (1%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
+P+ A++GG + K AL L + D LI G +F + ALG + L+E+ + A
Sbjct: 194 RPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGXAFTFLKALGYDIGNSLLEEELLEEA 253
Query: 67 SDLIQFARDKHITILYPKDFWCTKIHHPNQVEIF-PSHGIPDGWEPVDIGPRSVEEITST 125
+ ++ ++ + I P D + F P+ IP+GW +DIGP SV
Sbjct: 254 NKILTKGKNLGVKIYLPVDVVAAPACSQDVPXKFVPAQEIPNGWXGLDIGPASVRLFKEV 313
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
I+ + + W GP ++S G+ K + +S+G V G +A+ +
Sbjct: 314 ISDAQTIWWNGPXGVFEIDKFSKGSIKXSHY---ISEGHATSVVGGGDTADVVARAGDAD 370
Query: 186 FGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ G A E ++G+ LPGV AL
Sbjct: 371 EXTFISTGGGASLELIEGKELPGVKAL 397
>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9Q|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9T|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To 3-
Phosphoglycerate
pdb|2PAA|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
pdb|2PAA|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
Length = 416
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 7/212 (3%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K + + + + +I G M++ + L + + L ++
Sbjct: 204 ERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGAT 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPN----QVEIFPSHGIPDGWEPVDIGPRSVE 120
++++ A + I++P DF N Q I GIP GW +D GP S++
Sbjct: 264 IVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATI--ESGIPSGWMGLDCGPESIK 321
Query: 121 EITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK 180
+ + K ++W GP+ ++ G L + K + C + G AK
Sbjct: 322 INAQIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVKATSNGCVTIIGGGDTATCCAK 381
Query: 181 VSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
+ ++ G A E L+G++LPGV AL
Sbjct: 382 WGTEDKVSHVSTGGGASLELLEGKILPGVEAL 413
>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
With Bound Adp From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 395
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 16/214 (7%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+KP AAI+GG + K + L+ L + + LI G ++ + A G V L E+
Sbjct: 185 KKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFP--SHGIPDGWEPVDIGPRSVEEIT 123
A++++ A+ + I P D K N I S + D +DIGP S + I
Sbjct: 245 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEM-ILDIGPESQKIIA 303
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
+ ++W GPV ++ G L+ ++Q G AI K
Sbjct: 304 ELLKSANTILWNGPVGVFEFDNFAEGTKALS---LAIAQSHAFSVAGGGDTIAAIEK--- 357
Query: 184 SIFGLN-----MVESGSAVWEFLKGRMLPGVSAL 212
FG+ + +G A EFL+G+ LP + L
Sbjct: 358 --FGIKDQVSYISTAGGAFLEFLEGKKLPAIEIL 389
>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
pdb|4EHJ|B Chain B, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
Length = 392
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 14/213 (6%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+KP AAI+GG + K + L+ L + + LI G ++ + A G V L E+
Sbjct: 182 KKPXAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 241
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A++++ A+ + I P D K N Q I + +DIGP S + I
Sbjct: 242 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEXILDIGPESQKIIAE 301
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
+ ++W GPV ++ G L+ ++Q G AI K
Sbjct: 302 LLKSANTILWNGPVGVFEFDNFAEGTKALS---LAIAQSHAFSVAGGGDTIAAIEK---- 354
Query: 185 IFGLN-----MVESGSAVWEFLKGRMLPGVSAL 212
FG+ + +G A EFL+G+ LP + L
Sbjct: 355 -FGIKDQVSYISTAGGAFLEFLEGKKLPAIEIL 386
>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
1
Length = 235
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 30/186 (16%)
Query: 217 PFDIDWSAAY------------HD----------PAQPLVVDIGSGNGLFLLGMARKRKD 254
P ++DWS Y HD AQ DIG G G L+ ++ D
Sbjct: 11 PEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPD 70
Query: 255 LNFLGLEVNGKLVTHCRDSLQL------SGITNGYFIATNATSTFRSIVASYPGKLILVS 308
LGLE+ K+ + +D ++ G N + +NA + Y G+L +
Sbjct: 71 TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKGQLTKMF 128
Query: 309 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 368
P+P F R +H+WR++ +L+ + +L G V+ +D+ E+ M F E+ +
Sbjct: 129 FLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE 188
Query: 369 LVLVQD 374
V ++D
Sbjct: 189 RVPLED 194
>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb
pdb|3DXY|A Chain A, Crystal Structure Of Ectrmb In Complex With Sam
pdb|3DXZ|A Chain A, Crystal Structure Of Ectrmb In Complex With Sah
Length = 218
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 279
+D+ A + A P+ ++IG G G L+ MA+ R + +FLG+EV+ V C S G+
Sbjct: 25 LDFPALFGREA-PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL 83
Query: 280 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 339
+N + +A ++ L +V + P+P ++ R+VQ E V L
Sbjct: 84 SNLRVMCHDAVEVLHKMIPD--NSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ 141
Query: 340 HDGKVFLQSDIE 351
G + +D E
Sbjct: 142 LGGVFHMATDWE 153
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 86/184 (46%), Gaps = 18/184 (9%)
Query: 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI---AT 287
P+ V++GSG G F+ G A++ D+N++G+++ ++++ D + G+ N + +
Sbjct: 42 NPIHVEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS 101
Query: 288 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 347
+ T F G++ + + +P + + R+ ++ ++ +L +G++ +
Sbjct: 102 DLTDYFED------GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155
Query: 348 SDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAP 407
+D + F +YG KL V + +G V +++EQ ++G
Sbjct: 156 TDNRGLFEYSLVSFSQYGX-KLNGVWLDLHASDFEG--------NVXTEYEQKFSNKGQV 206
Query: 408 MYRL 411
+YR+
Sbjct: 207 IYRV 210
>pdb|2FCA|A Chain A, The Structure Of Bstrmb
pdb|2FCA|B Chain B, The Structure Of Bstrmb
Length = 213
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 290
P+ +++G+G G F+ GMA++ D+N++G+E+ ++ ++ S N + +A
Sbjct: 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA- 97
Query: 291 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 350
T + PG++ V + +P + + R+ ++ +++ G + ++D
Sbjct: 98 DTLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155
Query: 351 EEVMLRMKQQFLEYGKGKLVLVQDECDT-KTNQGGWLGENSFGVRSDWEQHVIDRGAPMY 409
+ + F EYG L+L D +N G + +++E+ G P+Y
Sbjct: 156 RGLFEYSLKSFSEYG---LLLTYVSLDLHNSNLEG-------NIMTEYEEKFSALGQPIY 205
Query: 410 R 410
R
Sbjct: 206 R 206
>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase
Length = 387
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 15/212 (7%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
+P AI+GG + K L L+ D LI G ++ + A G V L E D A
Sbjct: 183 RPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEA 242
Query: 67 SDLIQFARDKHITILYPKDFW-CTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
L+ I P D T+ + + + + +DIG S +E+
Sbjct: 243 KRLLT-----TCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEI 297
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVS 182
+ K ++W GPV + G T ++ + ++ G ++A + ++
Sbjct: 298 LKNAKTILWNGPVGVFEFPNFRKG----TEIVANAIADSEAFSIAGGGDTLAAIDLFGIA 353
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214
I ++ G A EF++G++LP V+ L+
Sbjct: 354 DKISYIST--GGGAFLEFVEGKVLPAVAMLEE 383
>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme
pdb|2VDV|F Chain F, Structure Of Trm8, M7g Methylation Enzyme
Length = 246
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 217 PFDIDWSAAY---------HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLV 267
P D+DWS Y + + DIG G G ++ ++ + LG+E+ ++
Sbjct: 27 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86
Query: 268 THCRDSL--------QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 319
+ D + G N + NA + G+L + P+P F +
Sbjct: 87 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK--GQLSKMFFCFPDPHFKQR 144
Query: 320 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 364
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 189
>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|F Chain F, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 254
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 217 PFDIDWSAAY---------HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLV 267
P D+DWS Y + + DIG G G ++ ++ + LG+E+ ++
Sbjct: 35 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 94
Query: 268 THCRDSL--------QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 319
+ D + G N + NA + G+L + P+P F +
Sbjct: 95 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK--GQLSKMFFCFPDPHFKQR 152
Query: 320 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 364
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 153 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 197
>pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
pdb|2CUN|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
Length = 410
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 19/222 (8%)
Query: 6 EKPYAAIIGGGNLCNKAAALH--FLASRCDGLIFVGLMSFQIMHALGLPVPPELVE---- 59
+ P ++GG + + + R D ++ GL++ A G + + VE
Sbjct: 189 DSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKK 248
Query: 60 KGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI---FPSHGIPDGWEPVDIGP 116
KG D + + + I P DF + +VEI + G+ ++ +DIG
Sbjct: 249 KGLLDYVKHAEEILDEFYPYIRTPVDFAVD--YKGERVEIDLLSENRGLLHQYQIMDIGK 306
Query: 117 RSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACK 176
R+ E+ + K + ++ GP+ +++ G T + K + +V+G
Sbjct: 307 RTAEKYREILMKARIIVANGPMGVFEREEFAIG----TVEVFKAIADSPAFSVLG--GGH 360
Query: 177 AIAKVSS-SIFGLNMVES-GSAVWEFLKGRMLPGVSALDRAF 216
+IA + I G+ + + G A+ F G LP + AL ++
Sbjct: 361 SIASIQKYGITGITHISTGGGAMLSFFAGEELPVLRALQISY 402
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 229 PAQPL-VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT 287
P QP ++D+G+G G L +A +R D + ++ V+ + + Q I N + + +
Sbjct: 107 PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS 166
Query: 288 N-----ATSTFRSIVASYP 301
+ A F IV++ P
Sbjct: 167 DWFSALAGQQFAMIVSNPP 185
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 229 PAQPL-VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT 287
P QP ++D+G+G G L +A +R D + ++ V+ + + Q I N + + +
Sbjct: 107 PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS 166
Query: 288 N-----ATSTFRSIVASYP 301
+ A F IV++ P
Sbjct: 167 DWFSALAGQQFAMIVSNPP 185
>pdb|3EJG|A Chain A, Crystal Structure Of Hcov-229e X-Domain
Length = 193
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 312 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 354
P D++ P Q ++ E ++ LVHD F Q D++ V+
Sbjct: 9 PMSDYDIPTTENLYFQGAMAEKLNAFLVHDNVAFYQGDVDTVV 51
>pdb|3PGV|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|B Chain B, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|C Chain C, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|D Chain D, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
Length = 285
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 64 DAASDLIQFARD--KHITILYPKDFWCTKIHHPNQVEIFPSHGIPDG-WEPVDIGPRSVE 120
D A+DL + R+ K +T +Y +D W H P + F +EP ++ P+ +
Sbjct: 105 DIAADLFEIVRNDPKIVTNVYREDEWYXNRHRPEEXRFFKEAVFNYKLYEPGELDPQGIS 164
Query: 121 EITST 125
++ T
Sbjct: 165 KVFFT 169
>pdb|2JLA|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|C Chain C, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|D Chain D, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
Length = 558
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
+AK+ ++P A I+ G +A+ LI GL +++ L PPEL++
Sbjct: 67 LAKVSKQPVAVIVTSGTA---------VANLYPALIEAGLTGEKLI-LLTADRPPELIDC 116
Query: 61 GANDAASDLIQFARDKHITILYPK 84
GAN A FA +I P+
Sbjct: 117 GANQAIRQPGXFASHPTHSISLPR 140
>pdb|2JLC|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
pdb|2JLC|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
Length = 577
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
+AK+ ++P A I+ G +A+ LI GL +++ L PPEL++
Sbjct: 86 LAKVSKQPVAVIVTSGTA---------VANLYPALIEAGLTGEKLI-LLTADRPPELIDC 135
Query: 61 GANDAASDLIQFARDKHITILYPK 84
GAN A FA +I P+
Sbjct: 136 GANQAIRQPGMFASHPTHSISLPR 159
>pdb|3FLM|A Chain A, Crystal Structure Of Mend From E.Coli
pdb|3FLM|B Chain B, Crystal Structure Of Mend From E.Coli
pdb|3HWW|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWW|D Chain D, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWX|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|B Chain B, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|I Chain I, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|J Chain J, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|R Chain R, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|S Chain S, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|Z Chain Z, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|1 Chain 1, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
Length = 556
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
+AK+ ++P A I+ G +A+ LI GL +++ L PPEL++
Sbjct: 65 LAKVSKQPVAVIVTSGTA---------VANLYPALIEAGLTGEKLI-LLTADRPPELIDC 114
Query: 61 GANDAASDLIQFARDKHITILYPK 84
GAN A FA +I P+
Sbjct: 115 GANQAIRQPGMFASHPTHSISLPR 138
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 51 LPVPPELVEKGANDAASDLIQFARDKHITILYPKD-------FWCTKIHHPNQV---EIF 100
L +PP+L N+ D+I+ +++ ++ KD T H P+ V + F
Sbjct: 10 LTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYF 69
Query: 101 PSHGIPDGWEPVDIGPRSVEEITSTITKCKKV---IWVGPVKFRFSSQYSNGASKLTG 155
+ I + PR+V ++ S + K +W P+ +S Y A +++G
Sbjct: 70 LASAI--------VAPRNVADVQSIVGLANKFSFPLW--PISIGRNSGYGGAAPRVSG 117
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 51 LPVPPELVEKGANDAASDLIQFARDKHITILYPKD-------FWCTKIHHPNQV---EIF 100
L +PP+L N+ D+I+ +++ ++ KD T H P+ V + F
Sbjct: 10 LTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYF 69
Query: 101 PSHGIPDGWEPVDIGPRSVEEITSTITKCKKV---IWVGPVKFRFSSQYSNGASKLTG 155
+ I + PR+V ++ S + K +W P+ +S Y A +++G
Sbjct: 70 LASAI--------VAPRNVADVQSIVGLANKFSFPLW--PISIGRNSGYGGAAPRVSG 117
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 51 LPVPPELVEKGANDAASDLIQFARDKHITILYPKD-------FWCTKIHHPNQV---EIF 100
L +PP+L N+ D+I+ +++ ++ KD T H P+ V + F
Sbjct: 10 LTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYF 69
Query: 101 PSHGIPDGWEPVDIGPRSVEEITSTITKCKKV---IWVGPVKFRFSSQYSNGASKLTG 155
+ I + PR+V ++ S + K +W P+ +S Y A +++G
Sbjct: 70 LASAI--------VAPRNVADVQSIVGLANKFSFPLW--PISIGRNSGYGGAAPRVSG 117
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 51 LPVPPELVEKGANDAASDLIQFARDKHITILYPKD-------FWCTKIHHPNQV---EIF 100
L +PP+L N+ D+I+ +++ ++ KD T H P+ V + F
Sbjct: 10 LTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYF 69
Query: 101 PSHGIPDGWEPVDIGPRSVEEITSTITKCKKV---IWVGPVKFRFSSQYSNGASKLTG 155
+ I + PR+V ++ S + K +W P+ +S Y A +++G
Sbjct: 70 LASAI--------VAPRNVADVQSIVGLANKFSFPLW--PISIGRNSGYGGAAPRVSG 117
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 51 LPVPPELVEKGANDAASDLIQFARDKHITILYPKD-------FWCTKIHHPNQV---EIF 100
L +PP+L N+ D+I+ +++ ++ KD T H P+ V + F
Sbjct: 10 LTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYF 69
Query: 101 PSHGIPDGWEPVDIGPRSVEEITSTITKCKKV---IWVGPVKFRFSSQYSNGASKLTG 155
+ I + PR+V ++ S + K +W P+ +S Y A +++G
Sbjct: 70 LASAI--------VAPRNVADVQSIVGLANKFSFPLW--PISIGRNSGYGGAAPRVSG 117
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 51 LPVPPELVEKGANDAASDLIQFARDKHITILYPKD-------FWCTKIHHPNQV---EIF 100
L +PP+L N+ D+I+ +++ ++ KD T H P+ V + F
Sbjct: 10 LTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYF 69
Query: 101 PSHGIPDGWEPVDIGPRSVEEITSTITKCKKV---IWVGPVKFRFSSQYSNGASKLTG 155
+ I + PR+V ++ S + K +W P+ +S Y A +++G
Sbjct: 70 LASAI--------VAPRNVADVQSIVGLANKFSFPLW--PISIGRNSGYGGAAPRVSG 117
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 51 LPVPPELVEKGANDAASDLIQFARDKHITILYPKD-------FWCTKIHHPNQV---EIF 100
L +PP+L N+ D+I+ +++ ++ KD T H P+ V + F
Sbjct: 10 LTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYF 69
Query: 101 PSHGIPDGWEPVDIGPRSVEEITSTITKCKKV---IWVGPVKFRFSSQYSNGASKLTG 155
+ I + PR+V ++ S + K +W P+ +S Y A +++G
Sbjct: 70 LASAI--------VAPRNVADVQSIVGLANKFSFPLW--PISIGRNSGYGGAAPRVSG 117
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 51 LPVPPELVEKGANDAASDLIQFARDKHITILYPKD-------FWCTKIHHPNQV---EIF 100
L +PP+L N+ D+I+ +++ ++ KD T H P+ V + F
Sbjct: 10 LTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPHHVMDQDYF 69
Query: 101 PSHGIPDGWEPVDIGPRSVEEITSTITKCKKV---IWVGPVKFRFSSQYSNGASKLTG 155
+ I + PR+V ++ S + K +W P+ +S Y A +++G
Sbjct: 70 LASAI--------VAPRNVADVQSIVGLANKFSFPLW--PISIGRNSGYGGAAPRVSG 117
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 23/118 (19%)
Query: 51 LPVPPELVEKGANDAASDLIQFARDKHITILYPKD-------FWCTKIHHPNQV---EIF 100
L +PP+L N+ D+I+ +++ ++ KD T H P V + F
Sbjct: 10 LTLPPKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYF 69
Query: 101 PSHGIPDGWEPVDIGPRSVEEITSTITKCKKV---IWVGPVKFRFSSQYSNGASKLTG 155
+ I + PR+V ++ S + K +W P+ +S Y A +++G
Sbjct: 70 LASAI--------VAPRNVADVQSIVGLANKFSFPLW--PISIGRNSGYGGAAPRVSG 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,735,234
Number of Sequences: 62578
Number of extensions: 522008
Number of successful extensions: 1247
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 57
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)