Query 014712
Match_columns 420
No_of_seqs 478 out of 3232
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0729 26S proteasome regulat 100.0 9.6E-90 2.1E-94 630.2 26.4 398 8-405 17-424 (435)
2 COG1222 RPT1 ATP-dependent 26S 100.0 8.3E-85 1.8E-89 621.0 31.4 372 26-401 13-394 (406)
3 KOG0728 26S proteasome regulat 100.0 6E-70 1.3E-74 495.8 24.8 357 33-398 21-387 (404)
4 KOG0726 26S proteasome regulat 100.0 1.3E-66 2.8E-71 482.6 20.7 315 81-399 102-426 (440)
5 KOG0652 26S proteasome regulat 100.0 7.7E-66 1.7E-70 471.3 23.2 367 28-399 19-412 (424)
6 KOG0727 26S proteasome regulat 100.0 2.4E-64 5.3E-69 459.6 22.7 350 34-399 37-396 (408)
7 PTZ00454 26S protease regulato 100.0 2.9E-55 6.3E-60 441.1 31.4 351 35-401 28-388 (398)
8 PTZ00361 26 proteosome regulat 100.0 1.8E-53 3.8E-58 430.9 31.6 323 74-400 93-425 (438)
9 KOG0651 26S proteasome regulat 100.0 6.7E-54 1.4E-58 401.3 17.6 312 82-398 51-372 (388)
10 PRK03992 proteasome-activating 100.0 8.3E-51 1.8E-55 410.1 31.9 356 34-405 13-378 (389)
11 KOG0730 AAA+-type ATPase [Post 100.0 4.9E-52 1.1E-56 422.0 19.7 252 150-404 416-679 (693)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 9.9E-52 2.1E-56 414.4 19.8 227 150-379 493-723 (802)
13 TIGR01242 26Sp45 26S proteasom 100.0 1.6E-48 3.4E-53 391.4 32.7 348 35-398 5-362 (364)
14 KOG0734 AAA+-type ATPase conta 100.0 1E-46 2.2E-51 373.3 17.2 215 161-379 297-511 (752)
15 KOG0736 Peroxisome assembly fa 100.0 3.3E-46 7.2E-51 382.8 21.3 219 159-379 663-885 (953)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 2.3E-45 5E-50 368.6 19.7 229 162-400 184-417 (802)
17 KOG0731 AAA+-type ATPase conta 100.0 6.5E-44 1.4E-48 372.7 20.9 237 160-397 303-551 (774)
18 COG0465 HflB ATP-dependent Zn 100.0 3.1E-42 6.8E-47 354.6 19.4 242 159-401 141-392 (596)
19 KOG0738 AAA+-type ATPase [Post 100.0 4.1E-42 8.9E-47 330.3 16.8 218 157-379 201-422 (491)
20 KOG0739 AAA+-type ATPase [Post 100.0 3.1E-42 6.8E-47 321.0 14.8 223 155-383 120-344 (439)
21 KOG0735 AAA+-type ATPase [Post 100.0 2.1E-41 4.6E-46 344.6 21.7 217 160-379 659-875 (952)
22 TIGR03689 pup_AAA proteasome A 100.0 2.3E-40 4.9E-45 339.7 25.7 267 103-380 120-401 (512)
23 COG1223 Predicted ATPase (AAA+ 100.0 1.3E-40 2.8E-45 305.3 16.1 232 159-398 112-354 (368)
24 KOG0737 AAA+-type ATPase [Post 100.0 2.9E-39 6.2E-44 310.5 16.6 214 162-380 86-302 (386)
25 TIGR01243 CDC48 AAA family ATP 100.0 1E-38 2.2E-43 346.5 21.5 221 157-379 442-662 (733)
26 COG0464 SpoVK ATPases of the A 100.0 1.1E-38 2.4E-43 332.5 19.7 240 159-401 233-485 (494)
27 TIGR01241 FtsH_fam ATP-depende 100.0 1.7E-37 3.6E-42 323.2 21.3 241 159-400 46-296 (495)
28 CHL00176 ftsH cell division pr 100.0 2.3E-36 4.9E-41 319.4 20.3 238 161-399 176-423 (638)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 4.4E-36 9.5E-41 308.4 20.9 233 162-401 222-465 (489)
30 KOG0730 AAA+-type ATPase [Post 100.0 2.5E-34 5.4E-39 293.0 17.6 228 163-396 180-413 (693)
31 PRK10733 hflB ATP-dependent me 100.0 7.2E-34 1.6E-38 303.1 21.2 238 161-399 145-392 (644)
32 KOG0741 AAA+-type ATPase [Post 100.0 1E-34 2.2E-39 288.0 10.4 244 161-405 212-496 (744)
33 KOG0732 AAA+-type ATPase conta 100.0 3.6E-34 7.8E-39 306.6 13.5 217 160-379 257-479 (1080)
34 PLN00020 ribulose bisphosphate 100.0 3.5E-33 7.6E-38 271.3 16.6 207 162-378 109-333 (413)
35 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.5E-33 1.2E-37 308.4 18.0 205 187-400 1615-1878(2281)
36 TIGR01243 CDC48 AAA family ATP 100.0 4.7E-32 1E-36 294.4 19.8 215 162-379 172-386 (733)
37 KOG0740 AAA+-type ATPase [Post 100.0 1.6E-32 3.5E-37 272.6 13.4 221 153-379 138-361 (428)
38 KOG0743 AAA+-type ATPase [Post 99.9 3.7E-23 8.1E-28 204.6 15.4 230 162-404 195-432 (457)
39 PF00004 AAA: ATPase family as 99.9 9.4E-22 2E-26 167.9 13.2 130 205-338 1-132 (132)
40 CHL00181 cbbX CbbX; Provisiona 99.8 1.7E-20 3.7E-25 182.0 14.5 177 168-357 23-214 (287)
41 TIGR02881 spore_V_K stage V sp 99.8 4.7E-20 1E-24 177.0 16.0 177 167-357 5-196 (261)
42 PF05496 RuvB_N: Holliday junc 99.8 6.4E-20 1.4E-24 168.3 15.3 188 159-375 15-216 (233)
43 KOG0744 AAA+-type ATPase [Post 99.8 5.8E-21 1.3E-25 180.8 8.2 212 166-379 140-386 (423)
44 TIGR02880 cbbX_cfxQ probable R 99.8 6.9E-20 1.5E-24 177.7 14.2 176 169-357 23-213 (284)
45 KOG0736 Peroxisome assembly fa 99.8 3.4E-19 7.4E-24 184.5 17.7 227 170-406 403-660 (953)
46 KOG0742 AAA+-type ATPase [Post 99.8 1.8E-19 3.9E-24 175.1 14.2 206 162-379 349-582 (630)
47 KOG0735 AAA+-type ATPase [Post 99.8 6.8E-19 1.5E-23 180.9 16.3 199 200-399 429-648 (952)
48 TIGR02639 ClpA ATP-dependent C 99.8 6.3E-18 1.4E-22 183.8 15.9 193 159-376 173-387 (731)
49 PRK00080 ruvB Holliday junctio 99.8 1.5E-17 3.3E-22 164.8 17.2 188 159-375 16-217 (328)
50 COG2256 MGS1 ATPase related to 99.8 5.7E-18 1.2E-22 165.4 13.7 174 160-374 16-206 (436)
51 COG2255 RuvB Holliday junction 99.7 1.7E-17 3.7E-22 155.4 13.9 200 162-395 20-233 (332)
52 PRK04195 replication factor C 99.7 2.9E-17 6.3E-22 170.8 17.2 185 156-372 2-194 (482)
53 TIGR00635 ruvB Holliday juncti 99.7 3.8E-17 8.2E-22 160.2 16.7 181 166-375 2-196 (305)
54 TIGR00763 lon ATP-dependent pr 99.7 2E-17 4.3E-22 180.9 14.8 166 169-352 321-505 (775)
55 PLN03025 replication factor C 99.7 4.3E-17 9.4E-22 160.9 15.8 178 157-372 2-192 (319)
56 COG0464 SpoVK ATPases of the A 99.7 5.2E-17 1.1E-21 169.6 17.0 189 186-379 2-190 (494)
57 PRK11034 clpA ATP-dependent Cl 99.7 4E-17 8.7E-22 176.1 15.0 190 160-374 178-389 (758)
58 COG0542 clpA ATP-binding subun 99.7 9.7E-18 2.1E-22 177.9 9.9 270 21-354 387-707 (786)
59 PRK14956 DNA polymerase III su 99.7 6.8E-17 1.5E-21 164.5 15.5 183 158-377 8-219 (484)
60 PRK07003 DNA polymerase III su 99.7 1.4E-16 3E-21 168.1 16.4 184 158-378 6-218 (830)
61 PRK12402 replication factor C 99.7 5.6E-16 1.2E-20 153.7 18.5 185 156-372 3-218 (337)
62 PRK12323 DNA polymerase III su 99.7 8.1E-17 1.8E-21 167.9 12.8 185 158-379 6-224 (700)
63 PHA02544 44 clamp loader, smal 99.7 2.2E-16 4.9E-21 155.5 15.4 165 155-352 8-173 (316)
64 PRK14962 DNA polymerase III su 99.7 3.3E-16 7.2E-21 161.3 15.7 178 158-372 4-210 (472)
65 KOG0989 Replication factor C, 99.7 1.9E-16 4.1E-21 149.8 12.1 183 155-372 23-222 (346)
66 TIGR03345 VI_ClpV1 type VI sec 99.7 4.5E-16 9.8E-21 170.9 16.7 191 159-375 178-391 (852)
67 PRK10865 protein disaggregatio 99.7 4.1E-16 9E-21 171.5 16.3 191 159-375 169-382 (857)
68 PRK13342 recombination factor 99.7 7.5E-16 1.6E-20 157.3 16.1 174 158-373 2-189 (413)
69 PRK14960 DNA polymerase III su 99.7 6.9E-16 1.5E-20 161.3 15.3 180 159-375 6-214 (702)
70 PRK07940 DNA polymerase III su 99.7 5.2E-16 1.1E-20 156.5 13.8 183 166-379 3-212 (394)
71 PRK07994 DNA polymerase III su 99.7 1E-15 2.2E-20 161.8 16.5 184 159-379 7-219 (647)
72 PRK14961 DNA polymerase III su 99.7 1.1E-15 2.4E-20 153.5 15.5 181 158-375 6-215 (363)
73 CHL00095 clpC Clp protease ATP 99.7 8.2E-16 1.8E-20 169.2 15.7 190 161-376 172-383 (821)
74 PRK14949 DNA polymerase III su 99.7 1.3E-15 2.9E-20 163.4 16.7 183 158-377 6-217 (944)
75 TIGR03346 chaperone_ClpB ATP-d 99.7 1.7E-15 3.7E-20 167.2 17.0 192 159-376 164-378 (852)
76 PRK14958 DNA polymerase III su 99.7 9E-16 2E-20 159.7 13.9 181 158-375 6-215 (509)
77 TIGR02902 spore_lonB ATP-depen 99.6 9E-16 1.9E-20 160.9 11.8 218 130-379 27-302 (531)
78 PRK06645 DNA polymerase III su 99.6 4.4E-15 9.5E-20 153.8 16.5 188 156-374 9-223 (507)
79 CHL00095 clpC Clp protease ATP 99.6 5E-16 1.1E-20 170.9 9.9 278 21-354 395-734 (821)
80 PRK08727 hypothetical protein; 99.6 7.9E-15 1.7E-19 138.4 16.6 175 159-372 10-196 (233)
81 PRK06893 DNA replication initi 99.6 6.6E-15 1.4E-19 138.6 15.6 180 159-372 7-195 (229)
82 PRK05896 DNA polymerase III su 99.6 5E-15 1.1E-19 154.6 14.9 182 157-375 5-215 (605)
83 PRK14963 DNA polymerase III su 99.6 9.2E-15 2E-19 151.9 16.7 179 160-375 6-212 (504)
84 PRK07764 DNA polymerase III su 99.6 6.1E-15 1.3E-19 160.4 15.9 178 158-372 5-213 (824)
85 PRK14957 DNA polymerase III su 99.6 9.3E-15 2E-19 152.3 16.6 178 158-372 6-212 (546)
86 PRK14964 DNA polymerase III su 99.6 7.2E-15 1.6E-19 151.2 15.2 179 159-374 4-211 (491)
87 PRK00440 rfc replication facto 99.6 9.3E-15 2E-19 143.7 15.5 179 156-372 5-195 (319)
88 PRK08691 DNA polymerase III su 99.6 6E-15 1.3E-19 155.6 14.8 181 158-375 6-215 (709)
89 PRK14951 DNA polymerase III su 99.6 6E-15 1.3E-19 155.6 14.9 181 158-375 6-220 (618)
90 PRK08084 DNA replication initi 99.6 2E-14 4.4E-19 135.8 16.9 175 160-372 14-201 (235)
91 TIGR00362 DnaA chromosomal rep 99.6 1.4E-14 3E-19 147.8 16.7 184 162-372 104-302 (405)
92 PRK11034 clpA ATP-dependent Cl 99.6 4.8E-15 1E-19 160.2 13.9 163 170-353 460-667 (758)
93 PRK07133 DNA polymerase III su 99.6 1.1E-14 2.3E-19 154.9 15.8 188 157-375 7-214 (725)
94 PTZ00112 origin recognition co 99.6 2E-14 4.4E-19 152.5 17.4 185 168-375 755-973 (1164)
95 PRK14959 DNA polymerase III su 99.6 1.1E-14 2.4E-19 152.8 15.2 182 157-375 5-215 (624)
96 PRK14952 DNA polymerase III su 99.6 1.5E-14 3.2E-19 152.1 16.1 178 159-373 4-212 (584)
97 TIGR02397 dnaX_nterm DNA polym 99.6 1.2E-14 2.6E-19 145.3 14.5 179 157-372 3-210 (355)
98 PRK00149 dnaA chromosomal repl 99.6 1.6E-14 3.5E-19 149.1 15.6 183 162-372 116-314 (450)
99 PRK13341 recombination factor 99.6 1.3E-14 2.7E-19 156.2 15.1 156 157-353 17-182 (725)
100 PRK14969 DNA polymerase III su 99.6 9.5E-15 2E-19 152.9 13.5 181 158-375 6-215 (527)
101 PRK05563 DNA polymerase III su 99.6 1.9E-14 4.2E-19 151.6 15.7 177 159-372 7-212 (559)
102 KOG2028 ATPase related to the 99.6 4.6E-15 1E-19 142.9 9.8 205 159-404 129-373 (554)
103 PRK06305 DNA polymerase III su 99.6 3E-14 6.5E-19 146.5 16.4 178 158-372 7-214 (451)
104 PRK14970 DNA polymerase III su 99.6 2.9E-14 6.2E-19 143.5 15.8 184 157-372 6-201 (367)
105 PRK14965 DNA polymerase III su 99.6 1.5E-14 3.3E-19 153.0 14.2 180 159-375 7-215 (576)
106 PRK14086 dnaA chromosomal repl 99.6 3.5E-14 7.6E-19 148.4 16.1 183 162-372 282-480 (617)
107 PRK14953 DNA polymerase III su 99.6 3.4E-14 7.3E-19 147.2 15.4 180 157-373 5-213 (486)
108 COG0466 Lon ATP-dependent Lon 99.6 1.4E-14 3E-19 150.4 11.8 166 169-352 324-508 (782)
109 PRK14088 dnaA chromosomal repl 99.6 3.9E-14 8.4E-19 145.5 15.0 182 162-372 99-297 (440)
110 PRK05342 clpX ATP-dependent pr 99.6 6.1E-14 1.3E-18 142.2 15.8 178 170-349 73-322 (412)
111 TIGR02639 ClpA ATP-dependent C 99.6 2.4E-14 5.2E-19 155.9 13.7 165 169-354 455-664 (731)
112 PRK08903 DnaA regulatory inact 99.6 1.1E-13 2.3E-18 130.0 16.0 171 160-372 10-191 (227)
113 TIGR02928 orc1/cdc6 family rep 99.6 1.1E-13 2.4E-18 139.0 16.9 164 168-353 15-213 (365)
114 PRK10787 DNA-binding ATP-depen 99.6 3E-14 6.5E-19 155.0 13.7 166 169-353 323-507 (784)
115 KOG2004 Mitochondrial ATP-depe 99.5 2.6E-14 5.7E-19 147.7 12.0 167 168-352 411-596 (906)
116 PRK05642 DNA replication initi 99.5 2.5E-13 5.5E-18 128.2 17.8 146 202-372 45-200 (234)
117 PF00308 Bac_DnaA: Bacterial d 99.5 9.1E-14 2E-18 129.9 14.6 182 163-372 3-200 (219)
118 PRK06647 DNA polymerase III su 99.5 7.5E-14 1.6E-18 146.8 15.2 180 159-375 7-215 (563)
119 PRK08451 DNA polymerase III su 99.5 1.1E-13 2.4E-18 143.6 16.1 178 158-372 4-210 (535)
120 PRK12422 chromosomal replicati 99.5 1.2E-13 2.6E-18 141.7 16.2 188 162-372 105-305 (445)
121 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.5E-13 3.3E-18 128.6 15.5 171 163-371 10-192 (226)
122 TIGR00390 hslU ATP-dependent p 99.5 3.6E-14 7.9E-19 141.7 11.6 177 170-348 14-342 (441)
123 PF05673 DUF815: Protein of un 99.5 1.8E-13 3.9E-18 127.5 15.4 186 159-375 18-235 (249)
124 PRK14948 DNA polymerase III su 99.5 1.4E-13 3E-18 146.3 16.5 181 157-374 5-216 (620)
125 PRK09111 DNA polymerase III su 99.5 1.7E-13 3.7E-18 144.8 17.0 189 156-375 12-228 (598)
126 PRK00411 cdc6 cell division co 99.5 2.5E-13 5.5E-18 137.8 17.1 191 166-379 28-249 (394)
127 PRK05201 hslU ATP-dependent pr 99.5 4E-14 8.8E-19 141.4 10.3 177 170-348 17-344 (443)
128 PRK14955 DNA polymerase III su 99.5 1.2E-13 2.7E-18 140.2 13.4 178 159-373 7-221 (397)
129 cd00009 AAA The AAA+ (ATPases 99.5 3.9E-13 8.4E-18 115.2 14.3 140 172-337 2-150 (151)
130 TIGR02640 gas_vesic_GvpN gas v 99.5 3E-13 6.4E-18 129.9 14.5 136 202-352 21-198 (262)
131 PRK14954 DNA polymerase III su 99.5 4E-13 8.7E-18 142.2 16.5 183 159-372 7-220 (620)
132 TIGR00382 clpX endopeptidase C 99.5 2.3E-13 5E-18 137.4 13.2 179 170-350 79-329 (413)
133 PRK06620 hypothetical protein; 99.5 6.1E-13 1.3E-17 123.9 13.9 164 160-372 8-181 (214)
134 PRK14950 DNA polymerase III su 99.5 5.7E-13 1.2E-17 141.6 15.5 178 158-372 6-213 (585)
135 PRK10865 protein disaggregatio 99.5 9.8E-13 2.1E-17 145.0 17.5 167 167-354 567-781 (857)
136 PRK14087 dnaA chromosomal repl 99.5 1.5E-12 3.3E-17 134.0 17.0 154 202-372 141-311 (450)
137 PHA02244 ATPase-like protein 99.5 1.5E-12 3.4E-17 128.3 15.8 128 201-343 118-265 (383)
138 PRK14971 DNA polymerase III su 99.4 1.1E-12 2.4E-17 139.4 15.4 178 158-372 7-214 (614)
139 TIGR03345 VI_ClpV1 type VI sec 99.4 9.6E-13 2.1E-17 144.8 14.5 164 169-354 567-782 (852)
140 TIGR02903 spore_lon_C ATP-depe 99.4 1.5E-12 3.2E-17 138.8 15.5 170 161-357 147-371 (615)
141 TIGR03346 chaperone_ClpB ATP-d 99.4 1E-12 2.2E-17 145.3 14.6 165 168-353 565-777 (852)
142 COG2812 DnaX DNA polymerase II 99.4 6.8E-13 1.5E-17 136.4 11.2 185 160-375 8-215 (515)
143 KOG1969 DNA replication checkp 99.4 3.4E-12 7.4E-17 132.6 16.3 199 156-379 259-505 (877)
144 TIGR01650 PD_CobS cobaltochela 99.4 3.9E-13 8.4E-18 131.1 8.1 140 201-354 63-235 (327)
145 PRK09087 hypothetical protein; 99.4 2.1E-12 4.5E-17 121.3 12.5 167 159-372 12-187 (226)
146 PRK07471 DNA polymerase III su 99.4 5.6E-12 1.2E-16 126.3 16.1 184 162-379 13-237 (365)
147 PRK09112 DNA polymerase III su 99.4 5.7E-12 1.2E-16 125.5 15.9 186 162-379 17-239 (351)
148 PRK05564 DNA polymerase III su 99.4 6.1E-12 1.3E-16 123.9 15.0 172 166-375 2-185 (313)
149 COG0593 DnaA ATPase involved i 99.4 7.5E-12 1.6E-16 125.3 15.6 183 161-372 80-278 (408)
150 COG1474 CDC6 Cdc6-related prot 99.4 5.9E-12 1.3E-16 126.0 14.0 161 170-354 19-205 (366)
151 KOG0991 Replication factor C, 99.4 4.1E-12 8.8E-17 116.2 10.8 178 157-372 16-206 (333)
152 TIGR00678 holB DNA polymerase 99.3 1.8E-11 3.8E-16 111.6 14.2 146 201-375 13-186 (188)
153 COG2607 Predicted ATPase (AAA+ 99.3 2.7E-11 5.8E-16 111.5 14.4 170 159-359 51-246 (287)
154 COG0714 MoxR-like ATPases [Gen 99.3 1.5E-11 3.3E-16 122.0 13.7 155 170-352 26-203 (329)
155 PRK13407 bchI magnesium chelat 99.3 3.3E-12 7.2E-17 126.0 8.6 165 162-352 2-216 (334)
156 TIGR00602 rad24 checkpoint pro 99.3 3E-11 6.5E-16 128.0 15.9 177 155-354 71-289 (637)
157 PRK07399 DNA polymerase III su 99.3 1.6E-11 3.5E-16 120.7 12.0 180 166-379 2-220 (314)
158 PRK05707 DNA polymerase III su 99.3 3.9E-11 8.4E-16 118.6 13.8 154 201-379 21-202 (328)
159 COG0470 HolB ATPase involved i 99.3 4.3E-11 9.4E-16 117.8 13.1 148 169-348 2-177 (325)
160 smart00382 AAA ATPases associa 99.3 7.8E-11 1.7E-15 99.8 13.0 126 202-339 2-147 (148)
161 COG0542 clpA ATP-binding subun 99.3 5.7E-11 1.2E-15 126.8 13.8 191 159-374 161-373 (786)
162 PF07728 AAA_5: AAA domain (dy 99.3 6.8E-12 1.5E-16 108.5 5.6 113 204-330 1-139 (139)
163 CHL00081 chlI Mg-protoporyphyr 99.2 1.8E-11 4E-16 121.1 9.0 165 162-352 11-232 (350)
164 COG3829 RocR Transcriptional r 99.2 1.7E-11 3.7E-16 124.7 8.4 161 161-346 238-424 (560)
165 PRK08058 DNA polymerase III su 99.2 9.6E-11 2.1E-15 116.2 12.4 149 166-350 3-180 (329)
166 PF07724 AAA_2: AAA domain (Cd 99.2 4.4E-11 9.5E-16 107.5 9.0 114 202-317 3-130 (171)
167 PF00158 Sigma54_activat: Sigm 99.2 5E-11 1.1E-15 106.8 9.1 123 170-317 1-144 (168)
168 PRK11331 5-methylcytosine-spec 99.2 1.9E-10 4.1E-15 116.5 13.6 144 167-338 174-357 (459)
169 PRK04132 replication factor C 99.2 2.2E-10 4.8E-15 124.5 14.7 150 201-375 563-726 (846)
170 TIGR02030 BchI-ChlI magnesium 99.2 7.4E-11 1.6E-15 116.8 9.8 160 166-351 2-218 (337)
171 TIGR02974 phageshock_pspF psp 99.1 3E-10 6.6E-15 112.5 12.2 149 170-346 1-177 (329)
172 PRK08116 hypothetical protein; 99.1 4.5E-10 9.8E-15 108.1 13.0 123 202-341 114-251 (268)
173 PRK11608 pspF phage shock prot 99.1 3E-10 6.6E-15 112.5 12.0 158 166-352 4-194 (326)
174 TIGR01817 nifA Nif-specific re 99.1 2.1E-10 4.5E-15 121.1 11.5 184 163-375 191-412 (534)
175 PF01078 Mg_chelatase: Magnesi 99.1 7E-11 1.5E-15 108.0 6.7 46 166-226 1-46 (206)
176 PRK13531 regulatory ATPase Rav 99.1 4.7E-10 1E-14 114.6 13.4 154 170-351 22-193 (498)
177 KOG2035 Replication factor C, 99.1 1.1E-09 2.4E-14 102.8 14.4 185 157-373 2-221 (351)
178 PRK11388 DNA-binding transcrip 99.1 8.6E-10 1.9E-14 118.9 15.9 184 164-375 321-538 (638)
179 COG1224 TIP49 DNA helicase TIP 99.1 9.9E-10 2.1E-14 106.3 14.5 63 168-238 39-103 (450)
180 PRK06871 DNA polymerase III su 99.1 9.6E-10 2.1E-14 108.2 14.7 167 173-378 7-201 (325)
181 COG2204 AtoC Response regulato 99.1 1.9E-10 4.1E-15 117.0 9.8 182 165-375 138-358 (464)
182 TIGR02442 Cob-chelat-sub cobal 99.1 2.2E-10 4.8E-15 122.9 10.6 156 166-350 2-212 (633)
183 PF06068 TIP49: TIP49 C-termin 99.1 4.9E-10 1.1E-14 109.9 11.9 77 262-358 279-367 (398)
184 PF13177 DNA_pol3_delta2: DNA 99.1 6.4E-10 1.4E-14 99.1 11.6 134 172-339 1-161 (162)
185 COG1220 HslU ATP-dependent pro 99.1 3.9E-10 8.4E-15 108.4 10.7 85 262-348 251-345 (444)
186 PRK12377 putative replication 99.1 7.8E-10 1.7E-14 105.0 12.8 101 202-317 101-206 (248)
187 COG1219 ClpX ATP-dependent pro 99.1 4.2E-10 9.2E-15 107.4 10.4 122 170-297 63-201 (408)
188 KOG1051 Chaperone HSP104 and r 99.1 5E-10 1.1E-14 121.1 12.3 127 169-316 563-710 (898)
189 PRK15424 propionate catabolism 99.1 1.6E-10 3.6E-15 120.7 8.2 162 165-354 216-418 (538)
190 KOG2227 Pre-initiation complex 99.1 1.3E-09 2.9E-14 108.8 14.0 189 168-379 150-366 (529)
191 PRK10820 DNA-binding transcrip 99.1 8.2E-10 1.8E-14 116.0 13.1 157 162-346 198-382 (520)
192 PRK05022 anaerobic nitric oxid 99.1 8.6E-10 1.9E-14 115.7 12.6 153 166-346 185-365 (509)
193 PRK07993 DNA polymerase III su 99.1 1.5E-09 3.3E-14 107.6 13.5 172 173-379 7-203 (334)
194 PRK06964 DNA polymerase III su 99.1 1.7E-09 3.7E-14 107.2 13.7 154 200-379 19-224 (342)
195 PF07726 AAA_3: ATPase family 99.1 5.8E-11 1.3E-15 100.1 2.7 107 204-330 1-129 (131)
196 KOG0990 Replication factor C, 99.1 3.1E-10 6.8E-15 108.4 7.9 168 152-354 25-205 (360)
197 smart00763 AAA_PrkA PrkA AAA d 99.1 2.3E-09 4.9E-14 106.0 14.0 62 166-235 48-118 (361)
198 TIGR02329 propionate_PrpR prop 99.1 2.7E-10 5.7E-15 119.2 7.7 165 164-354 208-403 (526)
199 PRK08769 DNA polymerase III su 99.1 3.1E-09 6.7E-14 104.4 14.7 171 173-379 9-207 (319)
200 PRK15429 formate hydrogenlyase 99.1 2.5E-09 5.5E-14 116.2 15.6 160 164-352 372-564 (686)
201 COG1221 PspF Transcriptional r 99.0 3.8E-10 8.3E-15 112.8 8.0 168 164-359 74-275 (403)
202 PRK06090 DNA polymerase III su 99.0 6E-09 1.3E-13 102.3 15.0 166 173-379 8-200 (319)
203 COG3604 FhlA Transcriptional r 99.0 1.1E-09 2.3E-14 110.4 9.3 155 164-346 219-401 (550)
204 PRK07952 DNA replication prote 99.0 4.1E-09 8.9E-14 99.8 12.7 100 203-317 100-205 (244)
205 TIGR00368 Mg chelatase-related 99.0 1.1E-09 2.3E-14 113.9 9.5 148 164-342 188-394 (499)
206 PRK08181 transposase; Validate 99.0 2.7E-09 5.9E-14 102.5 11.4 101 201-317 105-209 (269)
207 PRK06526 transposase; Provisio 98.9 3.2E-09 6.9E-14 101.4 9.6 101 201-317 97-201 (254)
208 smart00350 MCM minichromosome 98.9 2.1E-09 4.7E-14 112.6 9.2 135 203-353 237-401 (509)
209 PF14532 Sigma54_activ_2: Sigm 98.9 2E-09 4.3E-14 93.2 7.3 107 171-317 1-110 (138)
210 PF03215 Rad17: Rad17 cell cyc 98.9 1.4E-08 3.1E-13 105.9 14.6 178 155-353 6-227 (519)
211 PRK06835 DNA replication prote 98.9 8.6E-09 1.9E-13 101.9 12.0 101 202-317 183-289 (329)
212 KOG0741 AAA+-type ATPase [Post 98.9 7.8E-09 1.7E-13 104.5 11.5 143 201-349 537-683 (744)
213 TIGR00764 lon_rel lon-related 98.9 2E-08 4.4E-13 107.0 15.5 54 161-229 11-64 (608)
214 KOG0745 Putative ATP-dependent 98.9 1.1E-08 2.4E-13 101.3 12.0 95 203-297 227-330 (564)
215 COG1484 DnaC DNA replication p 98.9 1.3E-08 2.7E-13 97.3 12.1 119 172-317 87-209 (254)
216 PF13173 AAA_14: AAA domain 98.9 1.4E-08 3E-13 86.8 11.0 120 203-343 3-126 (128)
217 PRK09183 transposase/IS protei 98.9 7.1E-09 1.5E-13 99.4 10.2 103 200-317 100-206 (259)
218 PF01637 Arch_ATPase: Archaeal 98.9 3.9E-09 8.5E-14 98.2 8.0 180 171-375 2-229 (234)
219 PRK08699 DNA polymerase III su 98.9 1.1E-08 2.3E-13 101.2 10.9 132 200-350 19-183 (325)
220 PRK06921 hypothetical protein; 98.9 1.9E-08 4E-13 96.8 12.2 105 201-317 116-225 (266)
221 PRK08939 primosomal protein Dn 98.9 1.8E-08 3.9E-13 98.7 12.2 102 201-317 155-261 (306)
222 PF01695 IstB_IS21: IstB-like 98.8 4.1E-09 8.9E-14 95.3 5.8 102 200-317 45-150 (178)
223 KOG1942 DNA helicase, TBP-inte 98.8 7.9E-08 1.7E-12 91.1 14.3 88 261-368 296-397 (456)
224 TIGR02031 BchD-ChlD magnesium 98.8 1.9E-08 4.2E-13 107.0 11.5 137 203-352 17-174 (589)
225 COG1239 ChlI Mg-chelatase subu 98.8 3.7E-08 8.1E-13 98.0 12.2 162 165-353 14-233 (423)
226 TIGR03015 pepcterm_ATPase puta 98.8 6.5E-08 1.4E-12 92.9 13.6 159 203-376 44-234 (269)
227 KOG1514 Origin recognition com 98.8 8.4E-08 1.8E-12 100.2 14.3 159 204-375 424-612 (767)
228 PRK09862 putative ATP-dependen 98.8 2.4E-08 5.1E-13 103.7 9.5 147 165-342 188-391 (506)
229 TIGR02915 PEP_resp_reg putativ 98.8 3.5E-08 7.5E-13 101.9 10.2 150 166-346 137-317 (445)
230 PRK10923 glnG nitrogen regulat 98.7 1.3E-07 2.9E-12 98.3 12.7 179 166-375 136-355 (469)
231 PF03969 AFG1_ATPase: AFG1-lik 98.7 6.7E-08 1.5E-12 96.7 9.8 107 199-321 59-173 (362)
232 PRK11361 acetoacetate metaboli 98.7 2.4E-07 5.2E-12 95.9 13.9 153 166-346 141-321 (457)
233 PRK05917 DNA polymerase III su 98.7 3.2E-07 6.8E-12 88.8 13.5 131 175-339 4-154 (290)
234 PTZ00111 DNA replication licen 98.6 1.1E-07 2.3E-12 103.5 10.4 134 201-350 491-655 (915)
235 PLN03210 Resistant to P. syrin 98.6 3.7E-07 8E-12 104.8 14.6 180 162-376 178-391 (1153)
236 KOG1970 Checkpoint RAD17-RFC c 98.6 1.1E-06 2.3E-11 89.8 15.6 209 151-379 65-310 (634)
237 cd01120 RecA-like_NTPases RecA 98.6 3.2E-07 6.9E-12 80.3 10.6 110 205-318 2-138 (165)
238 PF12775 AAA_7: P-loop contain 98.6 1E-07 2.2E-12 92.0 7.0 137 202-353 33-194 (272)
239 PRK15115 response regulator Gl 98.6 6.5E-07 1.4E-11 92.4 13.1 154 169-353 135-323 (444)
240 PF13401 AAA_22: AAA domain; P 98.6 3.5E-07 7.7E-12 77.6 9.2 72 202-273 4-99 (131)
241 PRK13765 ATP-dependent proteas 98.5 2.4E-07 5.3E-12 98.8 9.3 54 159-227 22-75 (637)
242 PF05621 TniB: Bacterial TniB 98.5 2.6E-06 5.6E-11 82.3 14.8 183 170-376 36-257 (302)
243 COG3283 TyrR Transcriptional r 98.5 2.7E-07 5.8E-12 89.7 8.0 190 161-375 197-416 (511)
244 COG0606 Predicted ATPase with 98.5 2.6E-08 5.7E-13 100.5 0.9 47 164-225 175-221 (490)
245 PF12774 AAA_6: Hydrolytic ATP 98.5 1.4E-06 3.1E-11 82.0 12.5 132 202-357 32-182 (231)
246 PF00931 NB-ARC: NB-ARC domain 98.5 1.7E-06 3.6E-11 83.8 12.8 170 174-376 2-198 (287)
247 TIGR01818 ntrC nitrogen regula 98.5 5.6E-07 1.2E-11 93.3 9.8 155 168-353 134-323 (463)
248 PF05729 NACHT: NACHT domain 98.4 3.4E-06 7.3E-11 74.2 12.5 140 204-354 2-165 (166)
249 cd03216 ABC_Carb_Monos_I This 98.4 2E-06 4.3E-11 76.6 10.4 109 197-319 21-144 (163)
250 PRK05818 DNA polymerase III su 98.4 2.9E-06 6.3E-11 80.5 11.9 121 200-339 5-147 (261)
251 COG1485 Predicted ATPase [Gene 98.4 1.6E-06 3.4E-11 84.7 10.2 107 199-322 62-177 (367)
252 TIGR02237 recomb_radB DNA repa 98.4 1.3E-06 2.8E-11 80.7 9.3 116 198-316 8-149 (209)
253 PF13191 AAA_16: AAA ATPase do 98.4 6.3E-07 1.4E-11 80.6 6.3 59 170-238 2-63 (185)
254 KOG1968 Replication factor C, 98.4 1.3E-06 2.7E-11 95.8 9.3 203 156-379 308-526 (871)
255 COG1116 TauB ABC-type nitrate/ 98.4 2.8E-06 6E-11 79.5 10.3 28 198-225 25-52 (248)
256 PRK07276 DNA polymerase III su 98.4 5.4E-06 1.2E-10 80.4 12.6 143 173-349 7-172 (290)
257 KOG2170 ATPase of the AAA+ sup 98.3 1.3E-05 2.8E-10 76.7 14.6 185 170-375 84-324 (344)
258 PRK07132 DNA polymerase III su 98.3 7.1E-06 1.5E-10 80.2 13.3 142 202-375 18-179 (299)
259 cd03238 ABC_UvrA The excision 98.3 2.7E-06 5.8E-11 76.8 9.4 120 197-337 16-162 (176)
260 PRK10365 transcriptional regul 98.3 7.5E-06 1.6E-10 84.3 13.8 154 170-354 141-329 (441)
261 cd01124 KaiC KaiC is a circadi 98.3 7.5E-06 1.6E-10 73.9 12.2 103 205-318 2-141 (187)
262 COG1126 GlnQ ABC-type polar am 98.3 4.7E-06 1E-10 76.3 10.5 106 198-317 24-196 (240)
263 COG1136 SalX ABC-type antimicr 98.3 4.8E-06 1.1E-10 77.5 10.9 68 250-337 149-216 (226)
264 cd03247 ABCC_cytochrome_bd The 98.3 4.8E-06 1E-10 75.1 10.6 109 197-320 23-160 (178)
265 PRK11823 DNA repair protein Ra 98.3 4.2E-06 9E-11 86.4 11.5 114 198-315 76-206 (446)
266 KOG2680 DNA helicase TIP49, TB 98.3 6.4E-06 1.4E-10 78.6 11.5 77 262-358 289-377 (454)
267 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 4.1E-06 8.8E-11 79.2 10.1 60 247-320 143-202 (254)
268 cd03246 ABCC_Protease_Secretio 98.3 4.8E-06 1E-10 74.8 10.2 108 198-319 24-158 (173)
269 cd03228 ABCC_MRP_Like The MRP 98.3 6.7E-06 1.5E-10 73.7 11.0 109 197-320 23-158 (171)
270 cd01121 Sms Sms (bacterial rad 98.3 5.3E-06 1.2E-10 83.5 11.3 114 198-315 78-208 (372)
271 COG1618 Predicted nucleotide k 98.3 8.9E-06 1.9E-10 71.1 10.9 26 201-226 4-29 (179)
272 KOG2383 Predicted ATPase [Gene 98.3 5.5E-06 1.2E-10 81.9 10.8 138 200-364 112-271 (467)
273 PF00910 RNA_helicase: RNA hel 98.2 3.5E-06 7.7E-11 69.6 7.1 23 205-227 1-23 (107)
274 cd00267 ABC_ATPase ABC (ATP-bi 98.2 6.2E-06 1.4E-10 72.7 9.1 111 197-321 20-144 (157)
275 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 8.2E-06 1.8E-10 71.1 9.5 104 197-319 21-129 (144)
276 cd03222 ABC_RNaseL_inhibitor T 98.2 1.1E-05 2.5E-10 72.8 10.7 108 198-318 21-133 (177)
277 PRK08533 flagellar accessory p 98.2 2E-05 4.3E-10 74.3 12.2 110 198-317 20-163 (230)
278 COG2884 FtsE Predicted ATPase 98.2 1E-05 2.3E-10 72.6 9.4 57 251-321 145-201 (223)
279 COG2274 SunT ABC-type bacterio 98.2 1E-05 2.2E-10 87.6 11.2 120 197-338 494-682 (709)
280 cd03283 ABC_MutS-like MutS-lik 98.2 9.4E-06 2E-10 74.8 9.4 109 197-320 20-151 (199)
281 cd03223 ABCD_peroxisomal_ALDP 98.2 2.1E-05 4.6E-10 70.2 11.4 105 197-318 22-149 (166)
282 cd03214 ABC_Iron-Siderophores_ 98.2 1.1E-05 2.4E-10 72.9 9.6 111 197-320 20-161 (180)
283 cd00983 recA RecA is a bacter 98.2 9.1E-06 2E-10 80.0 9.6 118 198-315 51-190 (325)
284 PRK09361 radB DNA repair and r 98.1 1E-05 2.3E-10 75.7 9.4 117 198-316 19-161 (225)
285 TIGR02012 tigrfam_recA protein 98.1 1E-05 2.2E-10 79.6 9.5 118 198-315 51-190 (321)
286 COG1120 FepC ABC-type cobalami 98.1 1.4E-05 3.1E-10 75.9 9.9 55 250-317 145-199 (258)
287 cd03230 ABC_DR_subfamily_A Thi 98.1 1.7E-05 3.6E-10 71.3 9.6 108 197-318 21-156 (173)
288 TIGR01618 phage_P_loop phage n 98.1 7.1E-06 1.5E-10 76.5 7.2 109 202-316 12-142 (220)
289 KOG2228 Origin recognition com 98.1 1.9E-05 4.2E-10 76.6 10.3 161 169-352 25-219 (408)
290 COG1124 DppF ABC-type dipeptid 98.1 1.9E-05 4.1E-10 73.6 9.7 56 250-318 148-203 (252)
291 COG1373 Predicted ATPase (AAA+ 98.1 4.8E-05 1E-09 77.5 13.7 128 198-346 34-161 (398)
292 PF00493 MCM: MCM2/3/5 family 98.1 7.4E-06 1.6E-10 81.4 7.5 161 170-353 26-222 (331)
293 cd01394 radB RadB. The archaea 98.1 2.7E-05 5.9E-10 72.4 10.8 118 198-317 15-158 (218)
294 KOG0478 DNA replication licens 98.1 1.9E-05 4.2E-10 82.5 10.2 126 203-342 463-616 (804)
295 COG3284 AcoR Transcriptional a 98.1 7.1E-06 1.5E-10 85.5 6.9 128 202-346 336-490 (606)
296 PRK13539 cytochrome c biogenes 98.0 3.5E-05 7.6E-10 71.3 10.6 62 257-340 141-202 (207)
297 PRK06067 flagellar accessory p 98.0 5.4E-05 1.2E-09 71.3 12.1 39 198-236 21-62 (234)
298 cd03232 ABC_PDR_domain2 The pl 98.0 3.9E-05 8.4E-10 70.1 10.4 107 198-318 29-169 (192)
299 PHA00729 NTP-binding motif con 98.0 6.2E-06 1.4E-10 76.9 5.1 25 203-227 18-42 (226)
300 cd03213 ABCG_EPDR ABCG transpo 98.0 3.7E-05 8E-10 70.4 10.2 108 197-318 30-172 (194)
301 TIGR00416 sms DNA repair prote 98.0 4.4E-05 9.5E-10 79.0 11.7 114 198-316 90-221 (454)
302 cd03217 ABC_FeS_Assembly ABC-t 98.0 3.5E-05 7.5E-10 70.9 9.7 108 197-318 21-165 (200)
303 PF14516 AAA_35: AAA-like doma 98.0 0.00024 5.2E-09 70.7 16.3 163 201-375 30-234 (331)
304 cd03229 ABC_Class3 This class 98.0 4.3E-05 9.2E-10 68.9 9.9 110 197-319 21-163 (178)
305 PRK13541 cytochrome c biogenes 98.0 7E-05 1.5E-09 68.5 11.4 51 257-321 137-187 (195)
306 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.0 4.9E-05 1.1E-09 70.7 10.4 51 257-320 154-204 (218)
307 cd03215 ABC_Carb_Monos_II This 98.0 3.4E-05 7.3E-10 69.9 8.9 108 197-318 21-165 (182)
308 COG4618 ArpD ABC-type protease 98.0 3E-05 6.6E-10 78.9 9.2 57 251-321 480-536 (580)
309 COG4178 ABC-type uncharacteriz 98.0 1.5E-05 3.3E-10 83.7 7.4 108 196-318 413-575 (604)
310 KOG2543 Origin recognition com 98.0 0.00012 2.5E-09 72.4 12.8 158 169-350 7-191 (438)
311 PRK09376 rho transcription ter 98.0 4.4E-05 9.5E-10 76.5 10.0 113 202-314 169-317 (416)
312 COG1119 ModF ABC-type molybden 98.0 6E-05 1.3E-09 70.4 10.3 64 251-326 179-242 (257)
313 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 7.1E-05 1.5E-09 70.6 11.1 52 257-321 146-197 (236)
314 TIGR02858 spore_III_AA stage I 97.9 1.7E-05 3.8E-10 76.3 6.8 114 203-337 112-256 (270)
315 COG1122 CbiO ABC-type cobalt t 97.9 1.1E-05 2.4E-10 76.1 5.3 51 257-320 152-202 (235)
316 PRK11176 lipid transporter ATP 97.9 4.7E-05 1E-09 81.4 10.6 65 251-337 488-552 (582)
317 PRK13538 cytochrome c biogenes 97.9 7.4E-05 1.6E-09 68.9 10.6 51 257-321 143-193 (204)
318 cd03269 ABC_putative_ATPase Th 97.9 6.8E-05 1.5E-09 69.4 10.3 49 257-319 142-190 (210)
319 TIGR01188 drrA daunorubicin re 97.9 5.5E-05 1.2E-09 74.2 10.1 51 256-320 137-187 (302)
320 KOG1051 Chaperone HSP104 and r 97.9 0.00011 2.3E-09 80.5 13.0 161 168-354 186-365 (898)
321 PRK13540 cytochrome c biogenes 97.9 9.7E-05 2.1E-09 67.9 11.0 51 257-321 141-191 (200)
322 PRK11174 cysteine/glutathione 97.9 5.1E-05 1.1E-09 81.3 10.5 120 196-337 370-557 (588)
323 PRK13406 bchD magnesium chelat 97.9 1.6E-05 3.4E-10 84.4 6.4 125 203-343 26-173 (584)
324 COG1127 Ttg2A ABC-type transpo 97.9 6.1E-05 1.3E-09 70.2 9.4 56 251-319 153-208 (263)
325 COG4619 ABC-type uncharacteriz 97.9 5E-05 1.1E-09 67.1 8.2 30 196-225 23-52 (223)
326 PRK13537 nodulation ABC transp 97.9 5.2E-05 1.1E-09 74.6 9.4 52 255-320 150-201 (306)
327 COG3842 PotA ABC-type spermidi 97.9 4.4E-05 9.6E-10 75.7 8.8 28 198-225 27-54 (352)
328 PRK10790 putative multidrug tr 97.9 5.6E-05 1.2E-09 81.0 10.3 119 197-337 362-548 (592)
329 COG4608 AppF ABC-type oligopep 97.9 5.7E-05 1.2E-09 71.7 9.1 108 197-317 34-170 (268)
330 PRK09354 recA recombinase A; P 97.9 5.2E-05 1.1E-09 75.3 9.2 78 198-275 56-152 (349)
331 PF13207 AAA_17: AAA domain; P 97.9 9.5E-06 2.1E-10 68.0 3.3 30 205-234 2-31 (121)
332 cd03226 ABC_cobalt_CbiO_domain 97.9 7.7E-05 1.7E-09 68.7 9.7 49 257-319 140-188 (205)
333 TIGR01166 cbiO cobalt transpor 97.9 0.00013 2.8E-09 66.4 11.0 48 257-318 141-188 (190)
334 COG1131 CcmA ABC-type multidru 97.9 6E-05 1.3E-09 73.7 9.3 54 254-320 147-200 (293)
335 cd03280 ABC_MutS2 MutS2 homolo 97.9 0.00011 2.4E-09 67.6 10.6 105 199-317 24-151 (200)
336 cd03266 ABC_NatA_sodium_export 97.9 0.00012 2.6E-09 68.0 10.9 49 257-319 150-198 (218)
337 cd01128 rho_factor Transcripti 97.9 0.00013 2.8E-09 69.5 11.2 115 200-314 14-164 (249)
338 cd01393 recA_like RecA is a b 97.9 6.5E-05 1.4E-09 70.2 9.0 118 198-316 15-168 (226)
339 TIGR03796 NHPM_micro_ABC1 NHPM 97.9 5.9E-05 1.3E-09 82.6 10.0 63 251-337 623-685 (710)
340 PF05707 Zot: Zonular occluden 97.9 1.6E-05 3.4E-10 72.9 4.6 123 205-339 3-146 (193)
341 TIGR00960 3a0501s02 Type II (G 97.9 9.9E-05 2.1E-09 68.6 10.1 49 257-319 152-200 (216)
342 TIGR02211 LolD_lipo_ex lipopro 97.9 0.0001 2.2E-09 68.6 10.2 51 257-320 155-205 (221)
343 cd03268 ABC_BcrA_bacitracin_re 97.9 0.00013 2.9E-09 67.2 10.8 49 257-319 140-188 (208)
344 cd03218 ABC_YhbG The ABC trans 97.8 0.00013 2.7E-09 68.6 10.7 48 257-318 147-194 (232)
345 TIGR03877 thermo_KaiC_1 KaiC d 97.8 0.00019 4.1E-09 67.9 11.9 39 198-236 17-58 (237)
346 TIGR03375 type_I_sec_LssB type 97.8 7.3E-05 1.6E-09 81.7 10.3 65 251-337 609-673 (694)
347 cd03292 ABC_FtsE_transporter F 97.8 0.00013 2.8E-09 67.6 10.5 49 257-319 150-198 (214)
348 cd01131 PilT Pilus retraction 97.8 8.9E-05 1.9E-09 68.2 9.2 67 204-270 3-83 (198)
349 cd03233 ABC_PDR_domain1 The pl 97.8 0.00013 2.9E-09 67.1 10.4 108 198-317 29-180 (202)
350 PRK04296 thymidine kinase; Pro 97.8 0.00013 2.8E-09 66.7 10.1 95 204-316 4-115 (190)
351 COG5271 MDN1 AAA ATPase contai 97.8 5.4E-05 1.2E-09 85.4 8.8 137 201-352 1542-1703(4600)
352 cd03265 ABC_DrrA DrrA is the A 97.8 0.00012 2.6E-09 68.2 10.2 50 257-319 145-194 (220)
353 cd01123 Rad51_DMC1_radA Rad51_ 97.8 6.8E-05 1.5E-09 70.5 8.5 118 198-316 15-169 (235)
354 PRK13657 cyclic beta-1,2-gluca 97.8 8.3E-05 1.8E-09 79.7 10.2 65 251-337 479-543 (588)
355 cd03262 ABC_HisP_GlnQ_permease 97.8 0.0001 2.2E-09 68.3 9.5 50 257-320 149-198 (213)
356 PRK13543 cytochrome c biogenes 97.8 0.00012 2.5E-09 68.1 9.9 51 257-321 151-201 (214)
357 TIGR03797 NHPM_micro_ABC2 NHPM 97.8 8.4E-05 1.8E-09 81.1 10.3 30 197-226 474-503 (686)
358 TIGR03740 galliderm_ABC gallid 97.8 0.00014 3.1E-09 67.9 10.5 51 256-320 137-187 (223)
359 PF03266 NTPase_1: NTPase; In 97.8 1.9E-05 4.1E-10 70.7 4.4 23 204-226 1-23 (168)
360 cd03293 ABC_NrtD_SsuB_transpor 97.8 0.00013 2.8E-09 68.0 10.2 50 257-319 145-194 (220)
361 TIGR01189 ccmA heme ABC export 97.8 0.0002 4.3E-09 65.7 11.3 50 257-320 141-190 (198)
362 cd03263 ABC_subfamily_A The AB 97.8 0.00014 3.1E-09 67.6 10.5 49 257-320 147-195 (220)
363 TIGR02673 FtsE cell division A 97.8 0.00011 2.3E-09 68.2 9.4 49 257-319 151-199 (214)
364 cd03301 ABC_MalK_N The N-termi 97.8 0.00012 2.7E-09 67.7 9.7 49 257-318 144-192 (213)
365 cd03231 ABC_CcmA_heme_exporter 97.8 0.00017 3.7E-09 66.3 10.6 53 255-321 137-189 (201)
366 cd03243 ABC_MutS_homologs The 97.8 0.00011 2.4E-09 67.7 9.3 26 199-224 26-51 (202)
367 TIGR02857 CydD thiol reductant 97.8 0.0001 2.2E-09 77.9 10.3 30 197-226 343-372 (529)
368 PRK11629 lolD lipoprotein tran 97.8 0.00014 3.1E-09 68.4 10.3 51 257-320 159-209 (233)
369 PRK00131 aroK shikimate kinase 97.8 1.9E-05 4.2E-10 70.2 4.1 34 200-233 2-35 (175)
370 PRK11650 ugpC glycerol-3-phosp 97.8 0.00012 2.5E-09 73.6 10.1 52 254-318 145-196 (356)
371 COG1066 Sms Predicted ATP-depe 97.8 0.00018 3.8E-09 71.9 11.0 153 198-356 89-260 (456)
372 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.8 0.00013 2.9E-09 68.3 9.8 49 257-319 156-204 (224)
373 PRK13536 nodulation factor exp 97.8 9.1E-05 2E-09 73.9 9.2 50 257-320 186-235 (340)
374 PRK11248 tauB taurine transpor 97.8 0.00014 3.1E-09 69.5 10.2 50 257-319 142-191 (255)
375 cd03225 ABC_cobalt_CbiO_domain 97.8 0.00015 3.3E-09 67.0 10.1 49 257-319 148-196 (211)
376 TIGR02204 MsbA_rel ABC transpo 97.8 0.0001 2.3E-09 78.6 10.2 31 196-226 360-390 (576)
377 COG4988 CydD ABC-type transpor 97.8 0.00017 3.6E-09 74.9 11.2 118 198-337 343-528 (559)
378 cd03259 ABC_Carb_Solutes_like 97.8 0.00017 3.6E-09 66.9 10.3 50 257-319 144-193 (213)
379 PRK08118 topology modulation p 97.8 3.8E-05 8.3E-10 68.7 5.8 32 204-235 3-34 (167)
380 PF06745 KaiC: KaiC; InterPro 97.8 0.0001 2.3E-09 68.9 9.0 109 198-316 15-160 (226)
381 TIGR02203 MsbA_lipidA lipid A 97.8 0.00012 2.7E-09 78.0 10.6 65 251-337 477-541 (571)
382 COG4555 NatA ABC-type Na+ tran 97.8 0.00022 4.8E-09 64.8 10.4 50 256-319 146-195 (245)
383 PF04665 Pox_A32: Poxvirus A32 97.8 0.00055 1.2E-08 64.6 13.6 134 200-352 11-170 (241)
384 TIGR01288 nodI ATP-binding ABC 97.8 0.00014 3E-09 71.5 10.0 50 257-320 149-198 (303)
385 TIGR01846 type_I_sec_HlyB type 97.8 0.00012 2.5E-09 80.1 10.5 64 252-337 602-665 (694)
386 COG5271 MDN1 AAA ATPase contai 97.8 4.9E-05 1.1E-09 85.8 7.3 135 203-352 889-1047(4600)
387 cd03224 ABC_TM1139_LivF_branch 97.8 0.00015 3.3E-09 67.5 9.8 46 259-318 148-193 (222)
388 cd03254 ABCC_Glucan_exporter_l 97.8 0.00024 5.2E-09 66.5 11.1 49 257-320 153-201 (229)
389 TIGR02868 CydC thiol reductant 97.8 0.00017 3.7E-09 76.2 11.1 30 197-226 356-385 (529)
390 PRK13635 cbiO cobalt transport 97.8 0.00016 3.4E-09 70.2 9.9 51 257-320 154-204 (279)
391 cd03258 ABC_MetN_methionine_tr 97.8 0.00016 3.4E-09 68.0 9.7 50 257-319 154-203 (233)
392 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00026 5.6E-09 68.1 11.2 93 165-271 57-159 (264)
393 TIGR03608 L_ocin_972_ABC putat 97.7 0.0002 4.3E-09 65.9 10.0 48 257-318 148-195 (206)
394 cd03253 ABCC_ATM1_transporter 97.7 0.00023 4.9E-09 67.0 10.7 52 254-320 148-199 (236)
395 cd03264 ABC_drug_resistance_li 97.7 0.00023 5E-09 65.8 10.5 48 257-319 144-191 (211)
396 PRK13644 cbiO cobalt transport 97.7 0.00016 3.5E-09 69.9 9.8 50 257-320 150-199 (274)
397 TIGR02314 ABC_MetN D-methionin 97.7 0.00015 3.2E-09 72.5 9.7 52 255-319 152-203 (343)
398 PRK13648 cbiO cobalt transport 97.7 0.00025 5.4E-09 68.3 11.0 51 257-320 156-206 (269)
399 PRK10789 putative multidrug tr 97.7 0.00017 3.7E-09 77.0 10.7 30 197-226 336-365 (569)
400 cd03251 ABCC_MsbA MsbA is an e 97.7 0.00029 6.3E-09 66.2 11.2 50 256-320 151-200 (234)
401 PRK07261 topology modulation p 97.7 5.7E-05 1.2E-09 67.8 6.0 34 204-237 2-35 (171)
402 TIGR03522 GldA_ABC_ATP gliding 97.7 0.00014 3E-09 71.3 9.3 52 254-320 144-195 (301)
403 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00019 4.2E-09 66.8 9.8 109 203-322 30-159 (213)
404 PRK13650 cbiO cobalt transport 97.7 0.00015 3.3E-09 70.3 9.4 52 256-320 153-204 (279)
405 TIGR01842 type_I_sec_PrtD type 97.7 0.00016 3.5E-09 76.7 10.4 30 197-226 339-368 (544)
406 PRK09544 znuC high-affinity zi 97.7 0.00018 4E-09 68.6 9.8 111 197-320 25-184 (251)
407 PRK10908 cell division protein 97.7 0.00023 5E-09 66.4 10.3 49 257-319 151-199 (222)
408 cd03369 ABCC_NFT1 Domain 2 of 97.7 0.00028 6.1E-09 65.1 10.7 109 197-320 29-187 (207)
409 TIGR01192 chvA glucan exporter 97.7 0.00018 3.8E-09 77.1 10.6 63 253-337 481-543 (585)
410 PRK05973 replicative DNA helic 97.7 0.00039 8.4E-09 65.6 11.7 39 198-236 60-101 (237)
411 TIGR03878 thermo_KaiC_2 KaiC d 97.7 0.00032 6.9E-09 67.3 11.3 38 198-235 32-72 (259)
412 PRK09452 potA putrescine/sperm 97.7 0.00018 4E-09 72.6 10.1 52 254-318 155-206 (375)
413 TIGR01420 pilT_fam pilus retra 97.7 0.00019 4.2E-09 71.7 10.1 71 201-271 121-205 (343)
414 TIGR03880 KaiC_arch_3 KaiC dom 97.7 0.0004 8.6E-09 64.9 11.7 110 198-316 12-153 (224)
415 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.7 0.00029 6.4E-09 66.4 10.8 51 255-320 151-201 (238)
416 cd03252 ABCC_Hemolysin The ABC 97.7 0.00026 5.7E-09 66.7 10.4 51 255-320 150-200 (237)
417 COG3854 SpoIIIAA ncharacterize 97.7 0.00025 5.5E-09 65.7 9.8 70 203-272 138-229 (308)
418 PRK10584 putative ABC transpor 97.7 0.00023 4.9E-09 66.7 9.9 49 257-318 160-208 (228)
419 PRK13640 cbiO cobalt transport 97.7 0.0002 4.3E-09 69.6 9.7 51 257-320 157-207 (282)
420 COG4987 CydC ABC-type transpor 97.7 0.00037 8.1E-09 71.7 11.9 57 260-338 491-547 (573)
421 PRK11160 cysteine/glutathione 97.7 0.00013 2.8E-09 78.0 9.1 66 250-337 482-547 (574)
422 TIGR01193 bacteriocin_ABC ABC- 97.7 0.00018 3.9E-09 78.8 10.5 30 197-226 495-524 (708)
423 cd00984 DnaB_C DnaB helicase C 97.7 0.00024 5.1E-09 67.1 10.0 38 198-235 9-50 (242)
424 cd03298 ABC_ThiQ_thiamine_tran 97.7 0.00019 4.2E-09 66.4 9.2 51 257-320 142-192 (211)
425 PRK06581 DNA polymerase III su 97.7 0.0004 8.6E-09 65.1 11.0 134 202-354 15-163 (263)
426 cd03244 ABCC_MRP_domain2 Domai 97.7 0.00037 8.1E-09 64.9 11.2 51 255-320 151-201 (221)
427 TIGR03410 urea_trans_UrtE urea 97.7 0.00033 7.2E-09 65.6 10.8 50 257-319 145-194 (230)
428 PRK13632 cbiO cobalt transport 97.7 0.00033 7.1E-09 67.6 11.0 51 257-320 156-206 (271)
429 PRK04841 transcriptional regul 97.7 0.00093 2E-08 75.0 16.3 154 202-376 32-221 (903)
430 PRK13546 teichoic acids export 97.7 0.00023 5.1E-09 68.4 9.9 110 197-320 45-206 (264)
431 TIGR01184 ntrCD nitrate transp 97.7 0.00023 5.1E-09 66.9 9.7 49 257-318 128-176 (230)
432 TIGR03258 PhnT 2-aminoethylpho 97.7 0.0002 4.3E-09 72.1 9.7 53 255-319 149-201 (362)
433 PF13671 AAA_33: AAA domain; P 97.7 0.00011 2.3E-09 63.3 6.8 34 205-240 2-35 (143)
434 cd03227 ABC_Class2 ABC-type Cl 97.7 0.00017 3.6E-09 64.1 8.1 105 201-320 20-144 (162)
435 cd03261 ABC_Org_Solvent_Resist 97.7 0.00023 5E-09 67.0 9.5 50 257-319 150-199 (235)
436 PRK11607 potG putrescine trans 97.7 0.00018 4E-09 72.7 9.4 29 197-225 40-68 (377)
437 COG3839 MalK ABC-type sugar tr 97.7 0.00015 3.3E-09 71.6 8.5 28 198-225 25-52 (338)
438 PRK13647 cbiO cobalt transport 97.7 0.00026 5.6E-09 68.5 10.0 50 257-320 152-201 (274)
439 PRK11000 maltose/maltodextrin 97.7 0.00018 3.8E-09 72.7 9.2 51 255-318 145-195 (369)
440 cd01122 GP4d_helicase GP4d_hel 97.7 0.00022 4.8E-09 68.6 9.5 38 198-235 26-67 (271)
441 COG1117 PstB ABC-type phosphat 97.7 0.00033 7.2E-09 64.3 9.9 28 197-224 28-55 (253)
442 PRK11432 fbpC ferric transport 97.7 0.00028 6E-09 70.8 10.4 52 254-318 147-198 (351)
443 TIGR00958 3a01208 Conjugate Tr 97.7 0.00019 4.2E-09 78.6 10.1 31 196-226 501-531 (711)
444 COG1134 TagH ABC-type polysacc 97.7 0.00026 5.7E-09 66.2 9.4 108 197-318 48-208 (249)
445 PRK10247 putative ABC transpor 97.7 0.00032 7E-09 65.7 10.3 61 257-337 151-211 (225)
446 PRK09536 btuD corrinoid ABC tr 97.7 0.00024 5.2E-09 72.4 10.0 53 254-320 150-202 (402)
447 PRK11153 metN DL-methionine tr 97.7 0.0003 6.4E-09 70.4 10.6 50 257-319 154-203 (343)
448 cd03250 ABCC_MRP_domain1 Domai 97.7 0.00033 7.2E-09 64.5 10.1 30 197-226 26-55 (204)
449 COG1241 MCM2 Predicted ATPase 97.7 0.00011 2.4E-09 78.5 7.8 123 203-342 320-473 (682)
450 KOG0057 Mitochondrial Fe/S clu 97.7 0.00042 9.1E-09 71.4 11.5 121 198-340 374-562 (591)
451 TIGR03265 PhnT2 putative 2-ami 97.7 0.00023 5E-09 71.4 9.6 52 254-318 145-196 (353)
452 cd03245 ABCC_bacteriocin_expor 97.6 0.00038 8.3E-09 64.7 10.5 48 256-318 153-200 (220)
453 PRK09493 glnQ glutamine ABC tr 97.6 0.00032 7E-09 66.2 10.1 50 257-320 150-199 (240)
454 COG1118 CysA ABC-type sulfate/ 97.6 0.00033 7.2E-09 67.5 10.0 29 197-225 23-51 (345)
455 cd03235 ABC_Metallic_Cations A 97.6 0.00036 7.7E-09 64.7 10.2 50 257-320 146-195 (213)
456 PRK10895 lipopolysaccharide AB 97.6 0.00038 8.3E-09 65.8 10.6 30 197-226 24-53 (241)
457 PRK11247 ssuB aliphatic sulfon 97.6 0.00036 7.8E-09 66.9 10.4 51 256-319 146-196 (257)
458 PRK10771 thiQ thiamine transpo 97.6 0.00031 6.7E-09 66.0 9.6 51 257-320 143-193 (232)
459 cd03278 ABC_SMC_barmotin Barmo 97.6 0.0006 1.3E-08 62.7 11.3 45 260-319 134-178 (197)
460 cd03237 ABC_RNaseL_inhibitor_d 97.6 0.00043 9.3E-09 65.9 10.6 53 254-319 126-178 (246)
461 TIGR00968 3a0106s01 sulfate AB 97.6 0.0003 6.5E-09 66.4 9.5 50 258-320 145-194 (237)
462 cd03267 ABC_NatA_like Similar 97.6 0.00039 8.4E-09 65.7 10.1 50 257-319 167-216 (236)
463 PRK11614 livF leucine/isoleuci 97.6 0.00031 6.8E-09 66.2 9.5 47 258-318 152-198 (237)
464 PRK11124 artP arginine transpo 97.6 0.00048 1E-08 65.1 10.8 50 257-320 155-204 (242)
465 PRK05800 cobU adenosylcobinami 97.6 0.0003 6.5E-09 63.1 8.8 107 204-317 3-126 (170)
466 cd03248 ABCC_TAP TAP, the Tran 97.6 0.00053 1.2E-08 64.1 10.9 49 257-320 164-212 (226)
467 PF13604 AAA_30: AAA domain; P 97.6 0.00018 3.8E-09 66.1 7.5 35 202-236 18-55 (196)
468 PRK11022 dppD dipeptide transp 97.6 0.00041 8.8E-09 68.9 10.6 50 257-319 167-216 (326)
469 TIGR01186 proV glycine betaine 97.6 0.00042 9.1E-09 69.7 10.8 52 255-319 141-192 (363)
470 PF00437 T2SE: Type II/IV secr 97.6 0.00014 3.1E-09 70.0 7.1 100 162-272 98-208 (270)
471 TIGR03881 KaiC_arch_4 KaiC dom 97.6 0.00073 1.6E-08 63.3 11.8 38 198-235 16-56 (229)
472 PHA02774 E1; Provisional 97.6 0.00016 3.5E-09 75.6 7.8 37 199-235 431-468 (613)
473 cd00544 CobU Adenosylcobinamid 97.6 0.00032 7E-09 62.9 8.8 107 205-317 2-126 (169)
474 PLN03187 meiotic recombination 97.6 0.00035 7.5E-09 69.6 9.9 116 198-314 122-273 (344)
475 smart00534 MUTSac ATPase domai 97.6 0.00068 1.5E-08 61.6 11.1 101 205-318 2-123 (185)
476 PRK14247 phosphate ABC transpo 97.6 0.00048 1E-08 65.5 10.5 48 257-319 160-207 (250)
477 PF06309 Torsin: Torsin; Inte 97.6 8.2E-05 1.8E-09 62.9 4.5 50 169-226 26-77 (127)
478 PHA02624 large T antigen; Prov 97.6 0.00013 2.7E-09 76.7 6.8 121 198-338 427-561 (647)
479 KOG0480 DNA replication licens 97.6 0.00031 6.8E-09 73.3 9.6 161 169-352 346-542 (764)
480 PRK13695 putative NTPase; Prov 97.6 0.0006 1.3E-08 61.2 10.5 23 204-226 2-24 (174)
481 cd03219 ABC_Mj1267_LivG_branch 97.6 0.00043 9.3E-09 65.1 10.0 50 257-320 157-206 (236)
482 PRK09519 recA DNA recombinatio 97.6 0.00029 6.2E-09 76.7 9.7 117 198-314 56-194 (790)
483 PRK13633 cobalt transporter AT 97.6 0.00045 9.8E-09 67.0 10.3 51 257-320 158-208 (280)
484 cd03234 ABCG_White The White s 97.6 0.00049 1.1E-08 64.4 10.3 30 197-226 28-57 (226)
485 COG1125 OpuBA ABC-type proline 97.6 0.0003 6.5E-09 66.2 8.5 28 198-225 23-50 (309)
486 PRK11231 fecE iron-dicitrate t 97.6 0.00041 8.8E-09 66.2 9.9 50 257-320 152-201 (255)
487 PRK13652 cbiO cobalt transport 97.6 0.00036 7.7E-09 67.6 9.6 53 255-320 149-201 (277)
488 TIGR03771 anch_rpt_ABC anchore 97.6 0.0007 1.5E-08 63.3 11.2 48 257-318 127-174 (223)
489 PRK11264 putative amino-acid A 97.6 0.00049 1.1E-08 65.4 10.3 49 257-319 158-206 (250)
490 PRK13638 cbiO cobalt transport 97.6 0.00037 7.9E-09 67.2 9.5 50 257-320 150-199 (271)
491 TIGR01277 thiQ thiamine ABC tr 97.6 0.00049 1.1E-08 63.8 10.0 30 197-226 19-48 (213)
492 TIGR02688 conserved hypothetic 97.6 0.00053 1.1E-08 69.4 10.8 79 200-297 207-289 (449)
493 TIGR02238 recomb_DMC1 meiotic 97.6 0.00034 7.3E-09 68.9 9.3 117 198-315 92-244 (313)
494 COG4181 Predicted ABC-type tra 97.6 0.00057 1.2E-08 60.7 9.6 69 249-337 152-220 (228)
495 PRK04328 hypothetical protein; 97.6 0.00089 1.9E-08 63.9 11.9 38 198-235 19-59 (249)
496 PRK14250 phosphate ABC transpo 97.6 0.00042 9.2E-09 65.6 9.7 50 257-319 145-194 (241)
497 PRK13642 cbiO cobalt transport 97.6 0.00042 9.2E-09 67.1 9.9 51 257-320 154-204 (277)
498 PRK04301 radA DNA repair and r 97.6 0.00029 6.2E-09 69.7 8.8 117 198-315 98-251 (317)
499 PRK10575 iron-hydroxamate tran 97.6 0.00031 6.8E-09 67.5 8.9 51 257-320 161-211 (265)
500 PRK15455 PrkA family serine pr 97.6 6.1E-05 1.3E-09 78.7 4.1 64 165-235 73-137 (644)
No 1
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-90 Score=630.21 Aligned_cols=398 Identities=79% Similarity=1.235 Sum_probs=385.1
Q ss_pred cccccCCCCCCChhhHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCce
Q 014712 8 EIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ 87 (420)
Q Consensus 8 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (420)
+.++++++.+|+|.+++.+|.||.++|+.+|+++|++|+.+..+++.+.|+||+|||+|||++|++..+.+.+++++||+
T Consensus 17 ~~~d~~~~~~l~e~di~~lk~yg~~pya~~ik~~e~di~~l~~ki~~~~gikesdtglapp~~wdl~~dkq~mq~eqplq 96 (435)
T KOG0729|consen 17 EKEDDKPINPLDEGDIALLKSYGQGPYAAQIKKVEADIEDLLKKINELTGIKESDTGLAPPALWDLAADKQRMQEEQPLQ 96 (435)
T ss_pred chhhccCCCccchhhHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHhhCccccccCCCChHHHHHhhhHHHhcccCCce
Confidence 33455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCcc
Q 014712 88 VARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTY 167 (420)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 167 (420)
|++|.++++.+..+.+|+|+++++++|||+++..+++.+|++|++|++++..|+++.+||+++||++++|.++++|+++|
T Consensus 97 varctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty 176 (435)
T KOG0729|consen 97 VARCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTY 176 (435)
T ss_pred eheeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCccc
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhH
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGA 247 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~ 247 (420)
.|+||+.++++.|++.++.|+.||+.|.++|+.||+|+|+|||||||||++|+|+|+++++.|+++-+++++++|+|+++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgega 256 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGA 256 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCc
Q 014712 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRP 327 (420)
Q Consensus 248 ~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~ 327 (420)
+++|++|+.|+..+.||||+||||++++.|++++.+++.++|+++++++++++||++++|+.|+++||+|+.|||+|+||
T Consensus 257 rmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrp 336 (435)
T KOG0729|consen 257 RMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRP 336 (435)
T ss_pred HHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHH
Q 014712 328 GRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLY 397 (420)
Q Consensus 328 gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~ 397 (420)
||+|++++|.+||.+.|..||++|.+.|.+..++.|+.||++|++.|||+|+ .++++-..+..||-.|.+
T Consensus 337 grldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~ 416 (435)
T KOG0729|consen 337 GRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVN 416 (435)
T ss_pred cccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 577788889999999886
Q ss_pred HHHhhccc
Q 014712 398 VYRSYINN 405 (420)
Q Consensus 398 ~~~~~~~~ 405 (420)
-+.+-...
T Consensus 417 kvvkgy~k 424 (435)
T KOG0729|consen 417 KVVKGYAK 424 (435)
T ss_pred HHHHHHHh
Confidence 55544433
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-85 Score=620.96 Aligned_cols=372 Identities=51% Similarity=0.819 Sum_probs=341.1
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEE
Q 014712 26 LKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYV 105 (420)
Q Consensus 26 ~~~~~~~~~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (420)
++.+...+|...+.+.+.++.+...++..+...+..+..+++...|+...+.....+++|++||+|.++++++ +++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~----~~i 88 (406)
T COG1222 13 LESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDG----RAI 88 (406)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCc----eEE
Confidence 3444444555555555555555544444443223233344455678888888888899999999999999875 499
Q ss_pred EeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhh
Q 014712 106 INVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVE 185 (420)
Q Consensus 106 v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~ 185 (420)
|+.+++++|+|++.+.++...|+||++|++++.++++...||++.||.++.|.+++.|+++|+||||+++|+++|+++|+
T Consensus 89 Vks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VE 168 (406)
T COG1222 89 VKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVE 168 (406)
T ss_pred EEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEE
Q 014712 186 LPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV 265 (420)
Q Consensus 186 ~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il 265 (420)
+|++||++|+++|+.||+|||||||||||||+||||+|++++++|+++.+|+++++|+|++++++|++|..|+.++||||
T Consensus 169 LPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsII 248 (406)
T COG1222 169 LPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSII 248 (406)
T ss_pred ccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHH
Q 014712 266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (420)
Q Consensus 266 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~ 345 (420)
||||||+++++|++.+++++.++|++|++||++||||++.++|.||++||+++.|||||+||||||++|+||+||.+.|.
T Consensus 249 FiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~ 328 (406)
T COG1222 249 FIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRA 328 (406)
T ss_pred EEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHHHh
Q 014712 346 QIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVYRS 401 (420)
Q Consensus 346 ~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~~~ 401 (420)
+||++|+++|++.+++||+.||+.|+|+|||||+ .|..+..++++||.+|.+-+..
T Consensus 329 ~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 329 EILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 6888999999999999976544
No 3
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-70 Score=495.80 Aligned_cols=357 Identities=45% Similarity=0.749 Sum_probs=343.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccc
Q 014712 33 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIA 112 (420)
Q Consensus 33 ~~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 112 (420)
||.++++++|.++.+....+++|..++.. .+..+++..++.++.+++...||.+++.++. ++++|++....
T Consensus 21 y~~~ki~~~~~~v~~kt~nlrrleaqrne-----ln~kvr~lreel~~lqe~gsyvgev~k~m~k----~kVLVKvhpeg 91 (404)
T KOG0728|consen 21 YYLQKIEELQLQVAEKTQNLRRLEAQRNE-----LNAKVRLLREELQLLQEPGSYVGEVVKAMGK----KKVLVKVHPEG 91 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHhcCcchHHHHHHhcCc----ceEEEEEcCCC
Confidence 68899999999999999999999866644 3477888888888889999999999999976 57999999999
Q ss_pred eEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChh
Q 014712 113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192 (420)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~ 192 (420)
+|+|.+...++..++++|.+|++...+|.+...||.++||.++.|.+++.|+.+|+-|||++.+++++++.+++|.+||+
T Consensus 92 Kyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPE 171 (404)
T KOG0728|consen 92 KYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 171 (404)
T ss_pred cEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCccc
Q 014712 193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (420)
Q Consensus 193 ~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~ 272 (420)
+|+.+|+..|+|+|||||||||||+||+++|+++.+.|+++++++++++|+|++.+++|++|-.|+.++|+|||+||||.
T Consensus 172 LF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeids 251 (404)
T KOG0728|consen 172 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 251 (404)
T ss_pred HHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
+++.|.+++.|+++++|+++++|++++|||....++.||++||+.+.|||+|+||||+|+.|+||+|+.+.|.+||++|.
T Consensus 252 igs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 252 IGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHH
Q 014712 353 RTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYV 398 (420)
Q Consensus 353 ~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~ 398 (420)
+++++..++++..+|...+|.|||+++ +|++++-++++||.-|..-
T Consensus 332 rkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 332 RKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred hhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 999999999999999999999999998 6888999999999988743
No 4
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-66 Score=482.61 Aligned_cols=315 Identities=45% Similarity=0.761 Sum_probs=307.3
Q ss_pred hhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccc
Q 014712 81 QEEQPLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 160 (420)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (420)
....|+.||++.+++++++ ++|..+.+..|+|++.+.++...++||++|-++....++...|..++||.++.|.++
T Consensus 102 lRGtPmsvg~leEiidd~h----aivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~e 177 (440)
T KOG0726|consen 102 LRGTPMSVGTLEEIIDDNH----AIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVE 177 (440)
T ss_pred hcCCccccccHHHHhcCCc----eEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecc
Confidence 3679999999999999865 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
+.|..+|.||||++.++++|++.+++|+.||+.|+.+|++||+||+|||+||||||+||+|+|+.+.++|+++.++++.+
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+|.|++.+.+|++|+.|..++|+|+||||||+++.+|.+.++++..++|+++++||++++||+.++.|.||++||+++.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChh
Q 014712 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHD 390 (420)
Q Consensus 321 d~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~ 390 (420)
||+|+||||+|++|+|+.||...+..||.+|..+|.+..+|+++.+...-+.+|||||+ +|++|+.++.+
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~ 417 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTME 417 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHH
Confidence 99999999999999999999999999999999999999999999999999999999998 78999999999
Q ss_pred hHHHHHHHH
Q 014712 391 DYCKMLYVY 399 (420)
Q Consensus 391 d~~~~~~~~ 399 (420)
||.++.+.+
T Consensus 418 DF~ka~e~V 426 (440)
T KOG0726|consen 418 DFKKAKEKV 426 (440)
T ss_pred HHHHHHHHH
Confidence 999998653
No 5
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-66 Score=471.32 Aligned_cols=367 Identities=40% Similarity=0.679 Sum_probs=335.2
Q ss_pred HhCCChhhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCC--------
Q 014712 28 TYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNS-------- 99 (420)
Q Consensus 28 ~~~~~~~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 99 (420)
..+...+..+++.|.++|+-+++++.++. .+.+ +..+.+..+.+..+.++..|+.|+.++++++-+.
T Consensus 19 ~mste~i~~rtrlldnEirI~~sev~ri~--he~~---~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg 93 (424)
T KOG0652|consen 19 SMSTEEIISRTRLLDNEIRIMKSEVQRIN--HELQ---AMKEKIKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEEDSG 93 (424)
T ss_pred hccHHHHHHHHHHhhhHHHHHHHHHHHhh--hHHH---HHHHHHHhhHHHhhccccCchHHhhHHHHhcCCcccchhccC
Confidence 34555778899999999999999998875 2221 1224588889999999999999999999986210
Q ss_pred ---------CCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccc
Q 014712 100 ---------EDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDV 170 (420)
Q Consensus 100 ---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 170 (420)
..+-++|+.++-..|..-+-..+++..++||+.|++++.+|-+...||.+.|+.+..|.+.+.|..+|+||
T Consensus 94 ~n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDi 173 (424)
T KOG0652|consen 94 ANIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDI 173 (424)
T ss_pred CcccccccccceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCccccccc
Confidence 13445788888888877777779999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHH
Q 014712 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMV 250 (420)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v 250 (420)
||++.++++|.+++.+|+.|++.|+++|+.||+|+|+|||||||||++|||+|.+++++|+.+.++.+++.|+|++++.+
T Consensus 174 GGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLV 253 (424)
T KOG0652|consen 174 GGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 253 (424)
T ss_pred ccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcc
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf 330 (420)
|..|..|+..+|+||||||+|+++.+|+++...++.++|+++++||++++||.+...+.||++||+.+.|||+|+|+||+
T Consensus 254 RDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRL 333 (424)
T KOG0652|consen 254 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRL 333 (424)
T ss_pred HHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHH
Q 014712 331 DRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVY 399 (420)
Q Consensus 331 d~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~ 399 (420)
|++|+||.|+.+.|..|+++|.++|++.++++|++||+.|++|+||+.+ +|...-.+.++||..++.-+
T Consensus 334 DRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eV 412 (424)
T KOG0652|consen 334 DRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEV 412 (424)
T ss_pred cccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 33344556778888877443
No 6
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-64 Score=459.60 Aligned_cols=350 Identities=40% Similarity=0.678 Sum_probs=327.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccce
Q 014712 34 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAK 113 (420)
Q Consensus 34 ~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (420)
+.++++-++.+..-++++.+.|. ||- ..-.++..+. ++.|+.+|+..+.++.+ ..+|.+.++.+
T Consensus 37 le~~le~l~vqe~yik~e~~~lk--re~---------~~aqeevkri-qsvplvigqfle~vdqn----t~ivgsttgsn 100 (408)
T KOG0727|consen 37 LERELELLEVQEDYIKDEQRNLK--REL---------LHAQEEVKRI-QSVPLVIGQFLEAVDQN----TAIVGSTTGSN 100 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHH-hccchHHHHHHHhhhcc----CceeecccCCc
Confidence 35677777777777788777776 533 3344455554 79999999999999875 48999999999
Q ss_pred EEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhh
Q 014712 114 FVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEK 193 (420)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~ 193 (420)
|+|++-+.++.+.++|+++|++.+.+-.+...||++.|++.+.+...++|+++|.||||++-+++++++++++|+.|.++
T Consensus 101 y~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~l 180 (408)
T KOG0727|consen 101 YYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADL 180 (408)
T ss_pred eEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccc
Q 014712 194 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAI 273 (420)
Q Consensus 194 ~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l 273 (420)
|+++|+.||+|+|+|||||||||+||+|+|+.+.+.|+++.+++++++|.|++.+++|++|..|+.++|+||||||||++
T Consensus 181 y~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 181 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred HHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHh
Q 014712 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
+.+|++.++|.+.++|+.+.+|+++|+||+...|+.||++||+.+.|||+|+||||+|++|+||+||..+++-+|...+.
T Consensus 261 atkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tits 340 (408)
T KOG0727|consen 261 ATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITS 340 (408)
T ss_pred hhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHH
Q 014712 354 TMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVY 399 (420)
Q Consensus 354 ~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~ 399 (420)
+|++.+++|++.+..+-+..|||||. .|..+-.+.+.||.++....
T Consensus 341 km~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 341 KMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTV 396 (408)
T ss_pred cccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhh
Confidence 99999999999999999999999998 57778888889999987553
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.9e-55 Score=441.14 Aligned_cols=351 Identities=40% Similarity=0.662 Sum_probs=319.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceE
Q 014712 35 STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAKF 114 (420)
Q Consensus 35 ~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (420)
..+++.++.+++.+..+.+.+. ++. .++..+...+ +.+|+.||++.++++++ +++|+.+++++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~ 91 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLK--REL---------IRAKEEVKRI-QSVPLVIGQFLEMIDSN----YGIVSSTSGSNY 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHH-hCCCceEEEEEEEEcCC----EEEEEcCCCCEE
Confidence 4566677777777777776665 322 2244444444 78999999999999864 699999999999
Q ss_pred EEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhh
Q 014712 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKF 194 (420)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~ 194 (420)
+|.+.+.++...+++|++|+++..++.+...||...++.+..+.+++.|+++|+||||++.++++|++++.+|+.+|+.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~ 171 (398)
T PTZ00454 92 YVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELY 171 (398)
T ss_pred EEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCccccc
Q 014712 195 VKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIG 274 (420)
Q Consensus 195 ~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~ 274 (420)
.++|+.+|+++|||||||||||++|+++|++++.+|+.+.++++..+|.|+++..++.+|..|+...|+||||||+|.++
T Consensus 172 ~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~ 251 (398)
T PTZ00454 172 EQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIA 251 (398)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 275 GARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
.+|.+...+.+...++.+.+++++++++....++.||+|||+++.+|++++||||||+.|+|++|+.++|..||+.++.+
T Consensus 252 ~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 252 TKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred cccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 99887777778899999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHHHh
Q 014712 355 MNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVYRS 401 (420)
Q Consensus 355 ~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~~~ 401 (420)
+++..++++..++..|+||||+||+ .+..+...+.+||.+|++.+..
T Consensus 332 ~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 332 MNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 9999999999999999999999998 3444567888999999977543
No 8
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.8e-53 Score=430.87 Aligned_cols=323 Identities=44% Similarity=0.725 Sum_probs=303.7
Q ss_pred hhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCc
Q 014712 74 VSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPS 153 (420)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~ 153 (420)
..++....++.|+.||++.++++++ +++|+++++.+|+|++.+.++...++||++|+++..+..+...+|...|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~ 168 (438)
T PTZ00361 93 ELKKVDDLRGSPLSVGTLEEIIDEN----HAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPL 168 (438)
T ss_pred HHHHHHHhhCCCcEEEEEEEEeCCC----eEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchh
Confidence 3344444578999999999999864 599999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
+..|.+++.|.++|+||+|++.++++|++++.+|+.+|++|..+|+.+|+++|||||||||||++|+++|++++.+|+.+
T Consensus 169 ~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 169 VSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred hhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
.++++.++|.|++...++.+|..|..+.|+||||||||.++.+|.+..++++.+.++++.+++++++++....++.||+|
T Consensus 249 ~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~A 328 (438)
T PTZ00361 249 VGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMA 328 (438)
T ss_pred ecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEe
Confidence 99999999999999999999999999999999999999999998877778888999999999999999988889999999
Q ss_pred eCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------cccc
Q 014712 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSC 383 (420)
Q Consensus 314 tn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~ 383 (420)
||+++.+|++++||||||+.|+|+.|+.++|.+||+.++.++.+..+++++.++..++||+||||+ .+..
T Consensus 329 TNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 329 TNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred cCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 3445
Q ss_pred ccccChhhHHHHHHHHH
Q 014712 384 FMVNPHDDYCKMLYVYR 400 (420)
Q Consensus 384 ~~~~~~~d~~~~~~~~~ 400 (420)
+..++++||.+|++.+.
T Consensus 409 r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 RMKVTQADFRKAKEKVL 425 (438)
T ss_pred CCccCHHHHHHHHHHHH
Confidence 67788999999997753
No 9
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-54 Score=401.30 Aligned_cols=312 Identities=43% Similarity=0.745 Sum_probs=292.8
Q ss_pred hcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCccccccccc
Q 014712 82 EEQPLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEE 161 (420)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (420)
++....++.+.+...+ .+++|+.+++++|+|+++..++..+|..|.+|+++-.+..+...||.++| .+..|..+.
T Consensus 51 qsvg~~~gevlk~l~~----~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~ 125 (388)
T KOG0651|consen 51 QSVGQIIGEVLKQLED----EKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHED 125 (388)
T ss_pred hhcCchhHHHHhhccc----cceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcC
Confidence 4445556667666654 47999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 241 (420)
...++|+.++|+..++.++++.++.|+.+|++|.++|+++|++++||||||+|||++|+++|..++++|+.+..+++.++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 242 ~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
|.|++.+.+|+.|..|+.+.|||||+||||++++.+++..+..+.++|++|++|+++|++++..++|.+|+|||+|+.|+
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhh
Q 014712 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDD 391 (420)
Q Consensus 322 ~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d 391 (420)
|+|+||||+|+.+++|.|+...|..|++.|...+.....+|++.+.++++||.|+|++ +++.+..+-++|
T Consensus 286 paLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed 365 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHED 365 (388)
T ss_pred hhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHH
Confidence 9999999999999999999999999999999999988899999999999999999988 344455666677
Q ss_pred HHHHHHH
Q 014712 392 YCKMLYV 398 (420)
Q Consensus 392 ~~~~~~~ 398 (420)
|.++.+-
T Consensus 366 ~~k~vrk 372 (388)
T KOG0651|consen 366 FMKLVRK 372 (388)
T ss_pred HHHHHHH
Confidence 7776644
No 10
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=8.3e-51 Score=410.14 Aligned_cols=356 Identities=43% Similarity=0.731 Sum_probs=319.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccce
Q 014712 34 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAK 113 (420)
Q Consensus 34 ~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (420)
+..++++++.+++.+..+.+.+. + .++....+......+|+.++++.+.++++ +++|....+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~v~~~~g~~ 76 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLE--R----------ELERLKSELEKLKSPPLIVATVLEVLDDG----RVVVKSSGGPQ 76 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--H----------HHHHHHHHHHHhhCCCceEEEEEEEeCCC----eEEEEECCCCE
Confidence 34667777777777777766665 2 22333344444467999999999999875 48888889999
Q ss_pred EEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhh
Q 014712 114 FVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEK 193 (420)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~ 193 (420)
|+++....+....+++|.+|.++...+.+...+|...++.+..+.+.+.|+++|++|+|++++++++++++..|+.+++.
T Consensus 77 ~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~ 156 (389)
T PRK03992 77 FLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPEL 156 (389)
T ss_pred EEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccc
Q 014712 194 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAI 273 (420)
Q Consensus 194 ~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l 273 (420)
|..+|+.+|+++|||||||||||++|+++|++++.+|+.++++++...|.|+++..++.+|..++...|+||||||+|.+
T Consensus 157 ~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 157 FEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred HHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHh
Q 014712 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
++.|.+...+++.++++.+.+++.+++++...+++.||+|||+++.+|++++||||||+.|+|++|+.++|.+||+.+++
T Consensus 237 ~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 237 AAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred hcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 99888777777888999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHHHhhccc
Q 014712 354 TMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVYRSYINN 405 (420)
Q Consensus 354 ~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~~~~~~~ 405 (420)
++.+..++++..+|..|+||+|+||+ .+..+-..+..||.+|+..++.....
T Consensus 317 ~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 317 KMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccccc
Confidence 99998889999999999999999999 23334567889999999887665443
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-52 Score=422.02 Aligned_cols=252 Identities=42% Similarity=0.719 Sum_probs=230.4
Q ss_pred CCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
+.|+..+..+.+.|+++|+||||+++++.+|++.|.+|++||+.|.++|+.||+|||||||||||||++||++|++++++
T Consensus 416 i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 416 IRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred CCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 35666666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeE
Q 014712 230 FIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (420)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (420)
|+.+.++++.++|+|++++.++.+|..|+..+||||||||||++++.|+++.. ....+.+.+||++|||+....+|+
T Consensus 496 FlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 496 FLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred eeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEE
Confidence 99999999999999999999999999999999999999999999999974332 556789999999999999999999
Q ss_pred EEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccccccc------
Q 014712 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPFRSC------ 383 (420)
Q Consensus 310 vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~~~~------ 383 (420)
||++||+|+.||+||+||||||+.|++++||.+.|.+||+.+++++++.+++|++.||..|+|||||||....+
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a 652 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLA 652 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999982211
Q ss_pred ------ccccChhhHHHHHHHHHhhcc
Q 014712 384 ------FMVNPHDDYCKMLYVYRSYIN 404 (420)
Q Consensus 384 ------~~~~~~~d~~~~~~~~~~~~~ 404 (420)
--....++|.+++...+..+.
T Consensus 653 ~~e~i~a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 653 LRESIEATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred HHHhcccccccHHHHHHHHHhhcccCC
Confidence 223455677777776666554
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-52 Score=414.37 Aligned_cols=227 Identities=43% Similarity=0.733 Sum_probs=217.8
Q ss_pred CCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
+.|+..+..+..+|+++|+||||++++..+|..+|.+|.++|++|+.+|+..|.|||||||||||||+||||+|++.+++
T Consensus 493 iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N 572 (802)
T KOG0733|consen 493 IQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN 572 (802)
T ss_pred cCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc
Confidence 45778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeE
Q 014712 230 FIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (420)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (420)
|+.|.+++++++|+|++++.+|.+|+.|+..+||||||||+|+|++.|++.. .....+.+.+||.+|||...+.+|.
T Consensus 573 FisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~ 649 (802)
T KOG0733|consen 573 FISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVY 649 (802)
T ss_pred eEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceE
Confidence 9999999999999999999999999999999999999999999999997644 5667899999999999999999999
Q ss_pred EEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHh--cCCCCCCccHHHHHhhCC--CCcccccc
Q 014712 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR--TMNCERDIRFELLSRLCP--NSTGKHSP 379 (420)
Q Consensus 310 vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~--~~~~~~~v~l~~la~~t~--g~sgadl~ 379 (420)
||++||+|+.+|||++||||||+.+++++|+.++|..||+.+++ +..+..+||+++||+.+. |||||||.
T Consensus 650 viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 650 VIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred EEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH
Confidence 99999999999999999999999999999999999999999999 788889999999999866 99999998
No 13
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.6e-48 Score=391.40 Aligned_cols=348 Identities=46% Similarity=0.776 Sum_probs=315.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceE
Q 014712 35 STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAKF 114 (420)
Q Consensus 35 ~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (420)
..++++++.+++.+..+.+.+. ++ .....++....+.+|+.++++.+.+++. +++++.+.+.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 68 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLE--RE----------LERLRSEIERLRSPPLIVGTVLEVLDDN----RVVVKSSTGPNF 68 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HH----------HHHHHHHHHHHhCCCeEEEEEEEEecCC----EEEEEeCCCCEE
Confidence 4578888888888888888766 32 2333444455578999999999999864 589999999999
Q ss_pred EEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhh
Q 014712 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKF 194 (420)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~ 194 (420)
++.+...+++..+++|++|+++...+.+...+|...++.+..+.+.+.|.++|++|+|+++++++|++++..|+.+++.|
T Consensus 69 ~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~ 148 (364)
T TIGR01242 69 VVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELF 148 (364)
T ss_pred EEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCccccc
Q 014712 195 VKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIG 274 (420)
Q Consensus 195 ~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~ 274 (420)
..+|+.+|+++|||||||||||++|+++|++++.+|+.+.++++...+.|++...++.+|..++...|+||||||+|.++
T Consensus 149 ~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~ 228 (364)
T TIGR01242 149 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIA 228 (364)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 275 GARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
..+.+...+++.+.++++.+++.+++++...+++.||+|||+++.+|++++|||||++.++|+.|+.++|.+||+.++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 229 AKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK 308 (364)
T ss_pred cccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence 88877777778899999999999999887788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHH
Q 014712 355 MNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYV 398 (420)
Q Consensus 355 ~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~ 398 (420)
+.+..++++..++..|+||+|+||+ .+..+...+.+||.+|++.
T Consensus 309 ~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 309 MKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 9988889999999999999999998 2333455666777777654
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-46 Score=373.26 Aligned_cols=215 Identities=42% Similarity=0.719 Sum_probs=206.1
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
...+++|+|+-|+++++++|.+++++ +++|+.|.++|-+-|+||||.||||||||+||||+|.+.+.||++..++++-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.|+|.+++.+|++|..|+..+||||||||||+++++|.... -.....++.|||.+||||..+.+|+||++||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 99999999999999999999999999999999999985432 126788999999999999999999999999999999
Q ss_pred CccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 321 d~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
|++|.||||||+.|.+|.||...|.+||+.|+.++.+..++|+..||+-|.||+||||.
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLa 511 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLA 511 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-46 Score=382.78 Aligned_cols=219 Identities=41% Similarity=0.746 Sum_probs=205.3
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
..+.|+++|+||||++++|.+|.+.|..|++||++|.. |+.+..|+|||||||||||++|||+|.++...|+.|.++|+
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 45689999999999999999999999999999999966 88889999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc--CCCCeEEEEEeCC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKVLMATNR 316 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--~~~~v~vI~ttn~ 316 (420)
.++|+|++++.+|++|++|+..+||||||||+|.++++|+.++.++ .-+.+.+.|||.++||+. +...|+||++||+
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999998765443 235789999999999987 4668999999999
Q ss_pred CCCCCccccCcCcccEEEEccCC-CHHHHHHHHHHHHhcCCCCCCccHHHHHhhCC-CCcccccc
Q 014712 317 PDTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRTMNCERDIRFELLSRLCP-NSTGKHSP 379 (420)
Q Consensus 317 ~~~ld~al~r~gRfd~~i~~~~P-d~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~-g~sgadl~ 379 (420)
||.|||+|+||||||+.+++.++ |.+.+..+|+..++++.++.+||+.++|++|+ .|||||+.
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlY 885 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLY 885 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHH
Confidence 99999999999999999999887 66788899999999999999999999999997 99999988
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-45 Score=368.62 Aligned_cols=229 Identities=35% Similarity=0.647 Sum_probs=208.1
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 241 (420)
.++++|.+|||++..+.+|.+.+.. ++||+.|..+|+.||+|||||||||||||+||+|+|++++.+|+.+++.++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 3478999999999999999999988 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHH-HHHHHHHHHHhcCCcCC----CCeEEEEEeCC
Q 014712 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEV-QRTMLEIVNQLDGFDAR----GNIKVLMATNR 316 (420)
Q Consensus 242 ~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~-~~~l~~ll~~l~~~~~~----~~v~vI~ttn~ 316 (420)
+.|++++.+|++|..|+..+|||+||||||+|+++|.. +..++ ++.+.+|++-||++... ..|+||++||+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999999854 23343 45667999999987544 57999999999
Q ss_pred CCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccccccccccChhhHHHHH
Q 014712 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPFRSCFMVNPHDDYCKML 396 (420)
Q Consensus 317 ~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~~~~~~~~~~~d~~~~~ 396 (420)
|+.|||+|+|+||||+.|.+..|+..+|.+||+..++++.++.++|+..||++|+||.||||.+..+ ...++...
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~-----~Aa~vAik 413 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR-----EAAFVAIK 413 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH-----HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999995444 34444544
Q ss_pred HHHH
Q 014712 397 YVYR 400 (420)
Q Consensus 397 ~~~~ 400 (420)
+.+.
T Consensus 414 R~ld 417 (802)
T KOG0733|consen 414 RILD 417 (802)
T ss_pred HHhh
Confidence 5444
No 17
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-44 Score=372.66 Aligned_cols=237 Identities=41% Similarity=0.703 Sum_probs=219.5
Q ss_pred ccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014712 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (420)
Q Consensus 160 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 239 (420)
+....++|.|+.|+++++++|.|++.. ++||+.|.++|++.|+|+||+||||||||+||||+|.+.+.||+.+++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 445669999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccC-CCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFD-DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 240 ~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
..+.|.++..++++|..|+..+||||||||||+++..|++ ...+++.+...++.|||.+||||....+|+|+++||+++
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 9999999999999999999999999999999999999953 344678888999999999999999999999999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc----------cccccccc
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP----------FRSCFMVN 387 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~----------~~~~~~~~ 387 (420)
.||++|+||||||+.|.++.|+...|.+|++.|+++.++. +++++..+|.+|+||+||||. +|......
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999999996 779999999999999999999 34345555
Q ss_pred ChhhHHHHHH
Q 014712 388 PHDDYCKMLY 397 (420)
Q Consensus 388 ~~~d~~~~~~ 397 (420)
...+|..|++
T Consensus 542 ~~~~~~~a~~ 551 (774)
T KOG0731|consen 542 GTKDLEYAIE 551 (774)
T ss_pred chhhHHHHHH
Confidence 5667766665
No 18
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-42 Score=354.63 Aligned_cols=242 Identities=39% Similarity=0.677 Sum_probs=227.7
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
.+....++|.|+.|++++++++.+.+.. +++|..|..+|..-|+|++|+||||||||+|||++|.+++.||+.++++++
T Consensus 141 ~~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~F 219 (596)
T COG0465 141 LEDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 219 (596)
T ss_pred cccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhh
Confidence 3446789999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|+|-++..+|++|..|++.+||||||||||+++..|+....+++.+..+++.++|.+||||..+.+|+||++||+|+
T Consensus 220 VemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpd 299 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPD 299 (596)
T ss_pred hhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999999987777889999999999999999999889999999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccC
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNP 388 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~ 388 (420)
.+|+||+||||||+.|.++.||...|.+|++.|+++.++..++++..+|+.|+||+||||. ++......+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~ 379 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEIT 379 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEe
Confidence 9999999999999999999999999999999999999999999999999999999999998 456666777
Q ss_pred hhhHHHHHHHHHh
Q 014712 389 HDDYCKMLYVYRS 401 (420)
Q Consensus 389 ~~d~~~~~~~~~~ 401 (420)
+.+|..+.+.+-.
T Consensus 380 ~~~i~ea~drv~~ 392 (596)
T COG0465 380 MRDIEEAIDRVIA 392 (596)
T ss_pred ccchHHHHHHHhc
Confidence 7788887765443
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-42 Score=330.29 Aligned_cols=218 Identities=36% Similarity=0.578 Sum_probs=204.5
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
-.+...|.+.|+||.|+.++|+-|+++|.+|+..|+.|+.+ ..|.+|||++||||||||+||||+|.+++.+|+.|+.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 34667899999999999999999999999999999999875 47889999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC-CC---eEEEE
Q 014712 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR-GN---IKVLM 312 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~-~~---v~vI~ 312 (420)
.+.++|.|++++++|-+|+.|+.++|++|||||||.|+++|+.. +.+....+.-.+||.+|||.... .+ |+|++
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 99999999999999999999999999999999999999999664 56777788888999999997543 23 88999
Q ss_pred EeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 313 ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
+||.|+.||.||+| ||...|++|+|+.+.|..++++.++...+.++++++.||..++||||+||.
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~ 422 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADIT 422 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999999998
No 20
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-42 Score=321.03 Aligned_cols=223 Identities=35% Similarity=0.611 Sum_probs=203.2
Q ss_pred cccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEe
Q 014712 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 234 (420)
....+.++|++.|+|+.|++.+++.|++++.+|++.|++|.. +-.|.+++|||||||||||+||+|+|.+.+.+|+.|+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 344577899999999999999999999999999999999965 3467899999999999999999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC-CCCeEEEEE
Q 014712 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMA 313 (420)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~-~~~v~vI~t 313 (420)
.++++++|.|++++.++.+|+.|+.++|+||||||||.+++.|+++ .+....+.-.++|-+|+|+.. ..++.|+++
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEec
Confidence 9999999999999999999999999999999999999999988653 456667777899999999754 457999999
Q ss_pred eCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccccccc
Q 014712 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSPFRSC 383 (420)
Q Consensus 314 tn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~~~~~ 383 (420)
||-|+.||.+++| ||++.|++|+|+...|..+|+.|+...+.. .+.|+.+|+++|+||||+||.....
T Consensus 276 TNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVr 344 (439)
T KOG0739|consen 276 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVR 344 (439)
T ss_pred CCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEeh
Confidence 9999999999999 999999999999999999999999776654 5679999999999999999995444
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-41 Score=344.60 Aligned_cols=217 Identities=39% Similarity=0.664 Sum_probs=208.3
Q ss_pred ccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014712 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (420)
Q Consensus 160 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 239 (420)
.+.....|+||||+.++++.|++.+.+|.+.|.+|.+.++..+.|+|||||||||||+||.++|..++..|+.+.++++.
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 34455899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 240 ~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
.+|+|.+++.+|.+|.+|+..+|||||+||+|.++++|+.+++|-. .+...++|.+|||...-.+|.|+++|.+|+.
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 9999999999999999999999999999999999999988777665 4778899999999999999999999999999
Q ss_pred CCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 320 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 320 ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
+||||+||||+|+.++.+.|+..+|.+|++.....+..+.++|++-+|.+|+|||||||+
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq 875 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ 875 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999
No 22
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.3e-40 Score=339.65 Aligned_cols=267 Identities=38% Similarity=0.588 Sum_probs=210.0
Q ss_pred eEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHH
Q 014712 103 KYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMRE 182 (420)
Q Consensus 103 ~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~ 182 (420)
+++|....+..+++.+...+....+++|+++.++.........+|. ..+..+..++.|+++|++|||++++++++++
T Consensus 120 ~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~ 196 (512)
T TIGR03689 120 RALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPK---AEVEDLVLEEVPDVTYADIGGLDSQIEQIRD 196 (512)
T ss_pred eEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCH---hHHhcceeecCCCCCHHHcCChHHHHHHHHH
Confidence 4444444444444444444444444555554444332222222221 1244566788999999999999999999999
Q ss_pred hhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc----------EEEEecchhhhhhhhhhHHHHHH
Q 014712 183 VVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------FIRVIGSELVQKYVGEGARMVRE 252 (420)
Q Consensus 183 ~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~----------~i~v~~~~l~~~~~g~~~~~v~~ 252 (420)
.+..|+.+|++|..+|+.+|+++|||||||||||++|+++|++++.+ |+.+.++++..+|.|++++.++.
T Consensus 197 ~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~ 276 (512)
T TIGR03689 197 AVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRL 276 (512)
T ss_pred HHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999987543 67788889999999999999999
Q ss_pred HHHHHHhC----CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcC
Q 014712 253 LFQMARSK----KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPG 328 (420)
Q Consensus 253 ~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~g 328 (420)
+|..++.. .|+||||||+|.++.+|+...+ +......+.+|++.++++...++++||+|||+++.|||+++|||
T Consensus 277 iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpG 354 (512)
T TIGR03689 277 IFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPG 354 (512)
T ss_pred HHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCcc
Confidence 99988763 7999999999999988754221 22224566799999999988889999999999999999999999
Q ss_pred cccEEEEccCCCHHHHHHHHHHHHhc-CCCCCCccHHHHHhhCCCCccccccc
Q 014712 329 RLDRKVEFGLPDLESRTQIFKIHTRT-MNCERDIRFELLSRLCPNSTGKHSPF 380 (420)
Q Consensus 329 Rfd~~i~~~~Pd~~~R~~Il~~~~~~-~~~~~~v~l~~la~~t~g~sgadl~~ 380 (420)
|||.+|+|++|+.++|.+||+.++.. +++ ...+..+.|++++++..
T Consensus 355 RfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l------~~~l~~~~g~~~a~~~a 401 (512)
T TIGR03689 355 RLDVKIRIERPDAEAAADIFSKYLTDSLPL------DADLAEFDGDREATAAA 401 (512)
T ss_pred ccceEEEeCCCCHHHHHHHHHHHhhccCCc------hHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999854 332 22234578999998873
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.3e-40 Score=305.26 Aligned_cols=232 Identities=34% Similarity=0.533 Sum_probs=209.5
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
.+..++++++|++|++++++..+-++++ +.+|+.|..+ .|++||+|||||||||++|+|+|+++..+++.+++.++
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~l 187 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATEL 187 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHH
Confidence 3567899999999999999998877776 8999999876 48899999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.+.++|++++.++++|+.|+..+|||+||||+|+|+-.|.-.. -..++...+..||.+|||+..+.+|+.|++||+|+
T Consensus 188 iGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe--lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~ 265 (368)
T COG1223 188 IGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE--LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE 265 (368)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH--hcccHHHHHHHHHHhccCcccCCceEEEeecCChh
Confidence 9999999999999999999999999999999999987664322 12345677888999999999999999999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc-----------cccccccc
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP-----------FRSCFMVN 387 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~-----------~~~~~~~~ 387 (420)
.||+++++ ||...|+|.+|+.++|..|++.+++++++.-+.++..++..|.||||.||+ .++.+-.+
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v 343 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKV 343 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhh
Confidence 99999999 999999999999999999999999999999999999999999999999998 34556666
Q ss_pred ChhhHHHHHHH
Q 014712 388 PHDDYCKMLYV 398 (420)
Q Consensus 388 ~~~d~~~~~~~ 398 (420)
..+|+..|+.-
T Consensus 344 ~~edie~al~k 354 (368)
T COG1223 344 EREDIEKALKK 354 (368)
T ss_pred hHHHHHHHHHh
Confidence 77788777754
No 24
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-39 Score=310.55 Aligned_cols=214 Identities=37% Similarity=0.637 Sum_probs=199.2
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcC-CCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-i~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
.-.++|+||||+++.++.+++.+.+|+++|++|...+ +.|++|+|||||||||||++|+|+|.+.+++|+.|.++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3457999999999999999999999999999996544 578999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCC--eEEEEEeCCCC
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN--IKVLMATNRPD 318 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~--v~vI~ttn~~~ 318 (420)
+|.|++++.++.+|..|.+-+||||||||+|.+.+.|. ++.++.....-.+++...||+..+++ |+|+++||+|.
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999999883 33456666666799999999987765 99999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccc
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPF 380 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~ 380 (420)
+||.|++| |+.+.++++.|+..+|.+||+..+++.++++++|+.++|.+|+||||.||+.
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLke 302 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKE 302 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999993
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1e-38 Score=346.48 Aligned_cols=221 Identities=47% Similarity=0.785 Sum_probs=207.5
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
....+.|.++|++|+|++.+++.|++.+.+|+.+++.|.++|+.+|+++|||||||||||++|+++|++++.+|+.++++
T Consensus 442 ~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~ 521 (733)
T TIGR01243 442 EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP 521 (733)
T ss_pred hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 33456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
++..+|+|++++.++.+|..|+...||||||||+|.+++.|+... ......+.+.+|+.+++++....+++||+|||+
T Consensus 522 ~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~ 599 (733)
T TIGR01243 522 EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNR 599 (733)
T ss_pred HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCC
Confidence 999999999999999999999999999999999999998875432 223456788899999999888889999999999
Q ss_pred CCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 317 ~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
|+.||++++||||||+.+++++|+.++|.+||+.+++++++..+++++.||+.|+||||+||.
T Consensus 600 ~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~ 662 (733)
T TIGR01243 600 PDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIE 662 (733)
T ss_pred hhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=332.45 Aligned_cols=240 Identities=44% Similarity=0.718 Sum_probs=216.8
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
....+.++|.++||++..++.+++.+.+|+.+++.|.+.++.+++++|||||||||||+||+++|++++.+|+.+.++++
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l 312 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSEL 312 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.++|+|++++.++.+|..|+..+||||||||+|++++.|++.. +....+.+.+++.++++.....+|.||++||+|+
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~ 389 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD 389 (494)
T ss_pred hccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999886533 2223688999999999999999999999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCC--CCCccHHHHHhhCCCCccccccc----------ccc-cc
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC--ERDIRFELLSRLCPNSTGKHSPF----------RSC-FM 385 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~--~~~v~l~~la~~t~g~sgadl~~----------~~~-~~ 385 (420)
.+|++++||||||+.++|++||..+|.+||+.+++.... ..++++..+++.|+||+|+||.. +.. ..
T Consensus 390 ~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~ 469 (494)
T COG0464 390 DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRR 469 (494)
T ss_pred ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999985554 57899999999999999999992 222 33
Q ss_pred ccChhhHHHHHHHHHh
Q 014712 386 VNPHDDYCKMLYVYRS 401 (420)
Q Consensus 386 ~~~~~d~~~~~~~~~~ 401 (420)
..+..||..|+...+.
T Consensus 470 ~~~~~~~~~a~~~~~p 485 (494)
T COG0464 470 EVTLDDFLDALKKIKP 485 (494)
T ss_pred CccHHHHHHHHHhcCC
Confidence 5666777777766433
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.7e-37 Score=323.18 Aligned_cols=241 Identities=41% Similarity=0.706 Sum_probs=218.9
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
.+..|.++|+||+|++++++++++++.. +.+++.|...|..+|+++|||||||||||++|+++|++++.+|+.++++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 4457889999999999999999999886 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
...+.|.+.+.++.+|..|+...||||||||||.++..+.....+.+.+..+++.+++.+++++....+++||+|||+++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 99999999999999999999999999999999999988866545556777889999999999998888999999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccc----------cccccccC
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPF----------RSCFMVNP 388 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~----------~~~~~~~~ 388 (420)
.+|++++||||||+.++++.|+.++|.+||+.++++..+..++++..+|..|.||+|+||.. +......+
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~ 284 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEIT 284 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999888878899999999999999999982 12233456
Q ss_pred hhhHHHHHHHHH
Q 014712 389 HDDYCKMLYVYR 400 (420)
Q Consensus 389 ~~d~~~~~~~~~ 400 (420)
.+++..|+..+.
T Consensus 285 ~~~l~~a~~~~~ 296 (495)
T TIGR01241 285 MNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHHHh
Confidence 788888886654
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=2.3e-36 Score=319.37 Aligned_cols=238 Identities=39% Similarity=0.679 Sum_probs=217.6
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
..+.++|+||+|++++++++.+.+.. +++++.|..+|...|+++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34568999999999999999998876 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.+.|.+...++.+|..|+...||||||||||.++..|+....+.+.+.+.++.+++.+++++....+++||++||+++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 99999889999999999999999999999999998887666667788889999999999999888899999999999999
Q ss_pred CccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChh
Q 014712 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHD 390 (420)
Q Consensus 321 d~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~ 390 (420)
|++++||||||+.+.|++|+.++|.+||+.|+++..+..++++..+|..|+||+|+||+ .+......+.+
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999988888889999999999999999998 22233446778
Q ss_pred hHHHHHHHH
Q 014712 391 DYCKMLYVY 399 (420)
Q Consensus 391 d~~~~~~~~ 399 (420)
+|..|++.+
T Consensus 415 dl~~Ai~rv 423 (638)
T CHL00176 415 EIDTAIDRV 423 (638)
T ss_pred HHHHHHHHH
Confidence 888888665
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.4e-36 Score=308.36 Aligned_cols=233 Identities=25% Similarity=0.379 Sum_probs=195.6
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 241 (420)
.++.+|++|||++.+++.+++....+ +..+.++|+.+|+|+|||||||||||++|+++|++++.+++.++++.+..+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 46789999999999999998866542 344577899999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 242 ~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
++|+++..++.+|..|+..+||||||||||.++..+... +......+.+..++..++. ...+++||+|||+++.||
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 999999999999999999999999999999998754322 1233455667777777763 356799999999999999
Q ss_pred ccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC--CCccHHHHHhhCCCCcccccccccc---------ccccChh
Q 014712 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE--RDIRFELLSRLCPNSTGKHSPFRSC---------FMVNPHD 390 (420)
Q Consensus 322 ~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~--~~v~l~~la~~t~g~sgadl~~~~~---------~~~~~~~ 390 (420)
++++|+||||+.++++.|+.++|.+||+.|+++.... .+.+++.||+.|+|||||||+.... ....+.+
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt~~ 454 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFTTD 454 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcCHH
Confidence 9999999999999999999999999999999886543 4789999999999999999993111 1234567
Q ss_pred hHHHHHHHHHh
Q 014712 391 DYCKMLYVYRS 401 (420)
Q Consensus 391 d~~~~~~~~~~ 401 (420)
||..++..++.
T Consensus 455 dl~~a~~~~~P 465 (489)
T CHL00195 455 DILLALKQFIP 465 (489)
T ss_pred HHHHHHHhcCC
Confidence 77777655443
No 30
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=293.01 Aligned_cols=228 Identities=39% Similarity=0.656 Sum_probs=206.1
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 242 (420)
++++ .++||+..++..+++.+.+|+.++..|..+|+++|+++|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6667 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCC-CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 243 VGEGARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 243 ~g~~~~~v~~~f~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
.|+++..+|..|+.|..++ |++|||||+|.++++|.... .-..+...+++..+++....++++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~----~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD----DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc----hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 99999999999999885432 134567778888888887889999999999999999
Q ss_pred ccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccccc--c---ccccChhhHHHHH
Q 014712 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPFRS--C---FMVNPHDDYCKML 396 (420)
Q Consensus 322 ~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~~~--~---~~~~~~~d~~~~~ 396 (420)
++++| ||||+.+.+..|+..+|.+|++.+++++++..++++..+|..|+||+||||.... . ....+.++|..|+
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~ 413 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEAL 413 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999 9999999999999999999999999999999889999999999999999999321 1 1222444676666
No 31
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=7.2e-34 Score=303.09 Aligned_cols=238 Identities=42% Similarity=0.708 Sum_probs=217.1
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
.....+|++++|.+..++++.+.+.. +.++..|..++...|+|++|+||||||||++|+++|++++.+|+.++++++..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 34557899999999999999999987 67788888899999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.+.+.+...++.+|..++...||||||||+|.++..|.....+++.+..+++.++|.+++++....+++||+|||+|+.+
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~l 303 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 303 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhc
Confidence 99999999999999999999999999999999998887665666777888999999999999888899999999999999
Q ss_pred CccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChh
Q 014712 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHD 390 (420)
Q Consensus 321 d~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~ 390 (420)
|++++||||||+.+.|++|+.++|.+||+.|+++.++..++++..+|+.|.|||||||. .+..+...+..
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~ 383 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 383 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHH
Confidence 99999999999999999999999999999999999998899999999999999999998 23344556678
Q ss_pred hHHHHHHHH
Q 014712 391 DYCKMLYVY 399 (420)
Q Consensus 391 d~~~~~~~~ 399 (420)
||..+++.+
T Consensus 384 d~~~a~~~v 392 (644)
T PRK10733 384 EFEKAKDKI 392 (644)
T ss_pred HHHHHHHHH
Confidence 888887654
No 32
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=287.95 Aligned_cols=244 Identities=34% Similarity=0.524 Sum_probs=206.4
Q ss_pred cCCCCcccc--ccccHHHHHHH-HHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC-cEEEEecc
Q 014712 161 EKPDVTYND--VGGCKEQIEKM-REVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-CFIRVIGS 236 (420)
Q Consensus 161 ~~~~~~~~~--i~G~~~~~~~l-~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~-~~i~v~~~ 236 (420)
-.|+..|++ |||++.....| ++++.....-|+..+++|++.-+|+|||||||||||++||.+..-+++ .--.|+++
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 467788887 89999888766 557777788899999999999999999999999999999999998864 34568999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHh--------CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCe
Q 014712 237 ELVQKYVGEGARMVRELFQMARS--------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~--------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (420)
++..+|+|+++..+|.+|..|.. ..-.||++||||+++.+|++... +..-....+.|||..|||.+.-.|+
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-CCCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998853 22359999999999999976432 1222345678999999999999999
Q ss_pred EEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCC----CCCCccHHHHHhhCCCCccccccc----
Q 014712 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CERDIRFELLSRLCPNSTGKHSPF---- 380 (420)
Q Consensus 309 ~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~----~~~~v~l~~la~~t~g~sgadl~~---- 380 (420)
.||+.||+.+.+|.||+|||||...+++.+||+..|.+||++|+++|. +..++|+.+||.+|.+||||+|..
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999997764 557899999999999999999981
Q ss_pred ---------------------cccccccChhhHHHHHHHHHhhccc
Q 014712 381 ---------------------RSCFMVNPHDDYCKMLYVYRSYINN 405 (420)
Q Consensus 381 ---------------------~~~~~~~~~~d~~~~~~~~~~~~~~ 405 (420)
..-.+.++..||-.|++.++.++.-
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~ 496 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGI 496 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCC
Confidence 1124556677787777776666553
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-34 Score=306.62 Aligned_cols=217 Identities=39% Similarity=0.664 Sum_probs=194.9
Q ss_pred ccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEEe
Q 014712 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVI 234 (420)
Q Consensus 160 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v~ 234 (420)
.-...++|++|||++..++.|++.+-.|+..|+.|.++++.||+|+|+|||||||||+.|+++|..+ ...|+.-+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 3456789999999999999999999999999999999999999999999999999999999999976 35677778
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
+.+..++|+|+.++.++.+|..|+...|+|||+||||-+++.|+.....-+.. ....||..|+|...++.|+||+||
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~S---IvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHAS---IVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhh---HHHHHHHhccCCCCCCceEEEccc
Confidence 89999999999999999999999999999999999999999987654444433 444566667888899999999999
Q ss_pred CCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc
Q 014712 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 315 n~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~ 379 (420)
|+++.+||+|+||||||+.++|++|+.+.|.+|+.+|.++..-. ...-+..||..|.||.||||+
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlk 479 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLK 479 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHH
Confidence 99999999999999999999999999999999999999888743 233467899999999999998
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.5e-33 Score=271.26 Aligned_cols=207 Identities=19% Similarity=0.207 Sum_probs=165.0
Q ss_pred CCCCccccc-cccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 162 KPDVTYNDV-GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 162 ~~~~~~~~i-~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
....+|+++ +|.--...-+..++....++- ....|+++|.+++||||||||||++|+++|++++++|+.++++++.+
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s 186 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES 186 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence 345677777 887777776666665433331 22367899999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHh-----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCC------------c
Q 014712 241 KYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------------D 303 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------------~ 303 (420)
+|+|++++.+|.+|..|.. .+||||||||||++++.|.+. +.....+....+|++.+|+. .
T Consensus 187 k~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 187 ENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred CcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 9999999999999999975 579999999999999988532 22223334445777776642 3
Q ss_pred CCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccc
Q 014712 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHS 378 (420)
Q Consensus 304 ~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl 378 (420)
...+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++.+++ ...+.++++.|+|++|
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 4567999999999999999999999999965 5899999999999999987764 3445555556666554
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.5e-33 Score=308.41 Aligned_cols=205 Identities=19% Similarity=0.282 Sum_probs=169.2
Q ss_pred ccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh------------------------
Q 014712 187 PMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY------------------------ 242 (420)
Q Consensus 187 ~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~------------------------ 242 (420)
|..++..+.++|+.+|+|+||+||||||||+||||+|+++++||+.+++++++..+
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 33445667889999999999999999999999999999999999999999998654
Q ss_pred -----------------hhhh--HHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc
Q 014712 243 -----------------VGEG--ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (420)
Q Consensus 243 -----------------~g~~--~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 303 (420)
.+.+ ...++.+|+.|+..+||||||||||+++.+. ....++.+|+++|++..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccc
Confidence 1122 2348899999999999999999999997641 11234778889998763
Q ss_pred ---CCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHH--HhcCCCCCC-ccHHHHHhhCCCCcccc
Q 014712 304 ---ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH--TRTMNCERD-IRFELLSRLCPNSTGKH 377 (420)
Q Consensus 304 ---~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~--~~~~~~~~~-v~l~~la~~t~g~sgad 377 (420)
...+|+||||||+|+.|||||+||||||+.|.++.|+..+|.+++... .+++.+..+ ++++.+|+.|+||+|||
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 456899999999999999999999999999999999999999998864 456666644 68999999999999999
Q ss_pred cc----------ccccccccChhhHHHHHHHHH
Q 014712 378 SP----------FRSCFMVNPHDDYCKMLYVYR 400 (420)
Q Consensus 378 l~----------~~~~~~~~~~~d~~~~~~~~~ 400 (420)
|+ .+..+......++..|++...
T Consensus 1846 LanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1846 LVALTNEALSISITQKKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 99 233345566788888886544
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.7e-32 Score=294.44 Aligned_cols=215 Identities=48% Similarity=0.818 Sum_probs=197.2
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 241 (420)
.+.++|++|+|++++++.+++++..|+.+|+.|..+|+.+++++|||||||||||++|+++|++++.+++.++++++..+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 242 ~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
+.|+.+..++.+|..+....|+||||||+|.++++|.......+ .+...+|+..++++...++++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~---~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVE---KRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHH---HHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 99999999999999999999999999999999987754322222 344556666677776778899999999999999
Q ss_pred ccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 322 ~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
++++++|||++.+.++.|+.++|.+||+.+++.+.+..++++..++..|+||+|+||.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~ 386 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLA 386 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHH
Confidence 9999999999999999999999999999999999888889999999999999999987
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.6e-32 Score=272.62 Aligned_cols=221 Identities=33% Similarity=0.595 Sum_probs=197.7
Q ss_pred cccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 153 ~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
.+........+++.|+|++|++.+++.+.+.+.+|+..++.|..+. .+++++||.||||+|||+|++|+|.++++.|+.
T Consensus 138 ~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~ 216 (428)
T KOG0740|consen 138 GIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFN 216 (428)
T ss_pred HHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEee
Confidence 3344445677889999999999999999999999999999998775 567899999999999999999999999999999
Q ss_pred EecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc--CCCCeEE
Q 014712 233 VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKV 310 (420)
Q Consensus 233 v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--~~~~v~v 310 (420)
++++.+.++|+|++++.++.+|.-|+..+|+|+||||+|.++.+|.+. .++...+...+++.+.++.. ..++|+|
T Consensus 217 iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~---e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 217 ISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN---EHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred ccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc---ccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 999999999999999999999999999999999999999999999543 34445577778888877654 3458999
Q ss_pred EEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCC-CCCccHHHHHhhCCCCcccccc
Q 014712 311 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC-ERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 311 I~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~-~~~v~l~~la~~t~g~sgadl~ 379 (420)
|+|||+|+.+|.+++| ||.+.+++|+|+.+.|..+|+..+.+.+. ..+.+++.|++.|+||+|.||.
T Consensus 294 igaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~ 361 (428)
T KOG0740|consen 294 IGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT 361 (428)
T ss_pred EecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH
Confidence 9999999999999999 99999999999999999999999976633 3567899999999999999998
No 38
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.7e-23 Score=204.56 Aligned_cols=230 Identities=22% Similarity=0.278 Sum_probs=178.6
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 241 (420)
.-+.+|+.++-..+.+++|.+-+..++++++.|.+.|....+|+|||||||||||+++.|+|+.++..++-+..++...
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~- 273 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL- 273 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-
Confidence 3348999999999999999999999999999999999999999999999999999999999999999988887766532
Q ss_pred hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCC--CCC--HHHHHHHHHHHHHhcCCcCCC--CeEEEEEeC
Q 014712 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV--GGD--NEVQRTMLEIVNQLDGFDARG--NIKVLMATN 315 (420)
Q Consensus 242 ~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~--~~~--~~~~~~l~~ll~~l~~~~~~~--~v~vI~ttn 315 (420)
... ++.++..+. ..+||+|.+||+-+.-+..... ... ....-++..||+.+||+.+.. -.+||+|||
T Consensus 274 ----n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTN 346 (457)
T KOG0743|consen 274 ----DSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTN 346 (457)
T ss_pred ----cHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecC
Confidence 222 566665443 3469999999998653322211 111 123468889999999998766 678999999
Q ss_pred CCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCC--ccccccccccccccChhhHH
Q 014712 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNS--TGKHSPFRSCFMVNPHDDYC 393 (420)
Q Consensus 316 ~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~--sgadl~~~~~~~~~~~~d~~ 393 (420)
.++.|||||+||||+|.+|++..-+..+-..++..++.--. +..-+.++.++.++. |+||+. +..|.+.. |..
T Consensus 347 h~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~--e~lm~~~~-dad 421 (457)
T KOG0743|consen 347 HKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVA--EELMKNKN-DAD 421 (457)
T ss_pred ChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHH--HHHhhccc-cHH
Confidence 99999999999999999999999999999999999885432 234467777777665 888877 23333332 566
Q ss_pred HHHHHHHhhcc
Q 014712 394 KMLYVYRSYIN 404 (420)
Q Consensus 394 ~~~~~~~~~~~ 404 (420)
.+++...+.++
T Consensus 422 ~~lk~Lv~~l~ 432 (457)
T KOG0743|consen 422 VALKGLVEALE 432 (457)
T ss_pred HHHHHHHHHHH
Confidence 66655555444
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=9.4e-22 Score=167.85 Aligned_cols=130 Identities=39% Similarity=0.693 Sum_probs=112.6
Q ss_pred ceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCC-CcEEEecCcccccCCccCCCCC
Q 014712 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVG 283 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~ 283 (420)
+||+||||||||++|+.+|+.++.+++.++++++...+.+...+.++.+|..+.... |+||||||+|.+.... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999998889999999999999998887 9999999999998765 223
Q ss_pred CCHHHHHHHHHHHHHhcCCcCC-CCeEEEEEeCCCCCCCccccCcCcccEEEEccC
Q 014712 284 GDNEVQRTMLEIVNQLDGFDAR-GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 284 ~~~~~~~~l~~ll~~l~~~~~~-~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~ 338 (420)
.+......+..++..++..... .+++||+|||.++.+++++++ +||+..+++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4555566666777777765544 569999999999999999998 89999999874
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=1.7e-20 Score=181.97 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=138.5
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCC---cceeeCCCCChHHHHHHHHHHhc-------CCcEEEEecch
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK---GVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSE 237 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~---~vLL~GppGtGKT~Lakala~~~-------~~~~i~v~~~~ 237 (420)
.+++|++++|++|++++.+ +..+..+.+.|+.++. +++|+||||||||++|+++|..+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4699999999999999877 4556777888886653 48999999999999999999864 23689999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 238 l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
+...+.|+++..++.+|..+. ++||||||+|.+...+.. .....+.+..|..+++. ...+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMEN-----QRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 999999988877788888764 359999999998653321 11235555666555542 24668888887642
Q ss_pred -----CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCC
Q 014712 318 -----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 357 (420)
Q Consensus 318 -----~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~ 357 (420)
..++|++.+ ||+..|.|+.++.+++.+|++.++.+...
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~ 214 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQY 214 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcC
Confidence 134699999 99999999999999999999999976543
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=4.7e-20 Score=176.97 Aligned_cols=177 Identities=21% Similarity=0.325 Sum_probs=133.8
Q ss_pred cccccccHHHHHHHHHhhhcccCChhhhhhcCCCCC---CcceeeCCCCChHHHHHHHHHHhc-------CCcEEEEecc
Q 014712 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPP---KGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGS 236 (420)
Q Consensus 167 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~---~~vLL~GppGtGKT~Lakala~~~-------~~~~i~v~~~ 236 (420)
+++++|++++|+.|++++.++..+ ......|+.++ .+++|+||||||||++|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998875444 33344566543 468999999999999999999864 3478889999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
++.+.++|+....++.+|..+. ++||||||+|.|.... ........+..++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999988899998764 4699999999985311 1112233444555555532 455666766543
Q ss_pred C-----CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCC
Q 014712 317 P-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 357 (420)
Q Consensus 317 ~-----~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~ 357 (420)
. ..++|++++ ||+..+.|+.++.+++.+|++.++...+.
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~ 196 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREY 196 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 2 236789998 99999999999999999999999976543
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=6.4e-20 Score=168.33 Aligned_cols=188 Identities=22% Similarity=0.313 Sum_probs=129.4
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
.+..+|.+|++++|+++.+..++-++...... -.+..+++||||||+||||||+.+|++++.+|...+++.+
T Consensus 15 ~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i 86 (233)
T PF05496_consen 15 AERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI 86 (233)
T ss_dssp HHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-
T ss_pred HHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh
Confidence 34567889999999999999998777652211 2345689999999999999999999999999999888654
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc-----CCcC--------C
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GFDA--------R 305 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-----~~~~--------~ 305 (420)
.. .++ +..++... ....|||||||+++ +..+|..|+..++... |-.. -
T Consensus 87 ~k--~~d----l~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 87 EK--AGD----LAAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp -S--CHH----HHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred hh--HHH----HHHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 21 111 22223322 34569999999998 6888999998888532 1111 1
Q ss_pred CCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcc
Q 014712 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 306 ~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sg 375 (420)
.++.+|+||++...|.+.|+. ||.....+..++.++..+|++...+.+++. ++.-..+||+.+.|.+.
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPR 216 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChH
Confidence 358899999999999999999 999999999999999999999988887776 33347789999999765
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.8e-21 Score=180.82 Aligned_cols=212 Identities=24% Similarity=0.350 Sum_probs=165.8
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcC-CCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEec
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIG 235 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-i~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~ 235 (420)
-|+.++--...|+++..++...+...+.-.+-. +...+-+||+||||||||+|+||+|+++ ....+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 466677778889999888766444333222211 2335679999999999999999999986 346789999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHh-----CCCcEEEecCcccccCCccC-CCCCCCHHHHHHHHHHHHHhcCCcCCCCeE
Q 014712 236 SELVQKYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFD-DGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~-----~~p~Il~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (420)
..+.++|.+++.+.+..+|+.... +.--.++|||++.++..|.+ .+...+.+.-+++..+|.++|.+....||+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 999999999999999999998754 22346779999999988843 344566778899999999999999999999
Q ss_pred EEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCC-------------CC-----CCccHHHHHhh-C
Q 014712 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-------------CE-----RDIRFELLSRL-C 370 (420)
Q Consensus 310 vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~-------------~~-----~~v~l~~la~~-t 370 (420)
+++|+|..+.+|-|+.. |-|-+.++.+|+...|.+|++..+..+- +. .+.....++.+ +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 9999999999999999999998775321 00 11112334444 5
Q ss_pred CCCcccccc
Q 014712 371 PNSTGKHSP 379 (420)
Q Consensus 371 ~g~sgadl~ 379 (420)
.|.||.-|+
T Consensus 378 ~gLSGRtlr 386 (423)
T KOG0744|consen 378 VGLSGRTLR 386 (423)
T ss_pred cCCccchHh
Confidence 899998887
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=6.9e-20 Score=177.68 Aligned_cols=176 Identities=22% Similarity=0.335 Sum_probs=139.8
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCC---CCcceeeCCCCChHHHHHHHHHHhcC-------CcEEEEecchh
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---PKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRVIGSEL 238 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~---~~~vLL~GppGtGKT~Lakala~~~~-------~~~i~v~~~~l 238 (420)
+++|++++|++|++++.+ +..+..+.+.|+.+ ..+++|+||||||||++|+++|..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 599999999999999988 66778888889875 34899999999999999999988652 37999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC-
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP- 317 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~- 317 (420)
...+.|.+...++.+|..+.. ++|||||++.+.+.+.+ .....+.+..++++++. ...+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcHH
Confidence 999999888888888887643 69999999998643211 11234455555555542 24678888887643
Q ss_pred -C---CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCC
Q 014712 318 -D---TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 357 (420)
Q Consensus 318 -~---~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~ 357 (420)
+ .++|++.+ ||+..|.|+.++.+++..|++.++++...
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~ 213 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQY 213 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhcc
Confidence 2 35899999 99999999999999999999999987543
No 45
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.4e-19 Score=184.53 Aligned_cols=227 Identities=19% Similarity=0.269 Sum_probs=182.7
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHH
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARM 249 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~ 249 (420)
.-+.+..+..+..++.- .+.|. ..++.-...+||+|+||||||++++++|.++|.+++.++|.++.....+..+..
T Consensus 403 ~~~~~~~~~~l~~vl~p-~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSP-QKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred CccchHHHHHHHHHhCc-ccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHH
Confidence 44555555555555433 22221 122334457999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc-CCCCeEEEEEeCCCCCCCccccCcC
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNRPDTLDPALLRPG 328 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~ttn~~~~ld~al~r~g 328 (420)
+..+|.+|+...|+|||+-++|.++..+ ..+.+...+..+..++. .+.+. ....++||++|+..+.+++.+++
T Consensus 479 l~~~f~~a~~~~pavifl~~~dvl~id~---dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~-- 552 (953)
T KOG0736|consen 479 LQAIFSRARRCSPAVLFLRNLDVLGIDQ---DGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS-- 552 (953)
T ss_pred HHHHHHHHhhcCceEEEEeccceeeecC---CCchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--
Confidence 9999999999999999999999998543 22556666666666665 33333 45679999999999999999999
Q ss_pred cccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccccccc------------------------
Q 014712 329 RLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPFRSCF------------------------ 384 (420)
Q Consensus 329 Rfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~~~~~------------------------ 384 (420)
.|-..|.++.|+.++|.+||++++....+..++....+|+.|.||+.+++.+...+
T Consensus 553 ~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~ 632 (953)
T KOG0736|consen 553 LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEG 632 (953)
T ss_pred hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcccc
Confidence 78789999999999999999999999999999999999999999999998833222
Q ss_pred ------cccChhhHHHHHHHHHhhcccc
Q 014712 385 ------MVNPHDDYCKMLYVYRSYINNV 406 (420)
Q Consensus 385 ------~~~~~~d~~~~~~~~~~~~~~~ 406 (420)
...+++||.+++..++..++++
T Consensus 633 ~~~~~~~~l~~edf~kals~~~~~fs~a 660 (953)
T KOG0736|consen 633 ELCAAGFLLTEEDFDKALSRLQKEFSDA 660 (953)
T ss_pred ccccccceecHHHHHHHHHHHHHhhhhh
Confidence 3566789999998888777654
No 46
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.8e-19 Score=175.15 Aligned_cols=206 Identities=22% Similarity=0.356 Sum_probs=151.8
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 241 (420)
.+.-.+++++-......+|+.+..... + .+..-.|-+++++|||||||||++|+-+|.+.|..+-.+.+.+..-
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTa-N----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP- 422 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATA-N----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP- 422 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhc-c----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-
Confidence 344457777777777777766554311 1 1112235578999999999999999999999999988887776532
Q ss_pred hhhhhHHHHHHHHHHHHhC-CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 242 YVGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 242 ~~g~~~~~v~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.-.++...+..+|+.++.. ..-+|||||.|+++-.|.. +..+.....+|..||=.-- +....++++.+||+|.++
T Consensus 423 lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdl 498 (630)
T KOG0742|consen 423 LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDL 498 (630)
T ss_pred cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccch
Confidence 1223456678899998764 4458999999999988743 3445556666666653321 335578899999999999
Q ss_pred CccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-----------------------CCcc----HHHHHhhCCCC
Q 014712 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-----------------------RDIR----FELLSRLCPNS 373 (420)
Q Consensus 321 d~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-----------------------~~v~----l~~la~~t~g~ 373 (420)
|.++-. |||..++||+|..++|..+|..|+.++-+. ...+ ..+.|++|+||
T Consensus 499 DsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 499 DSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred hHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 999999 999999999999999999999998654211 0111 45779999999
Q ss_pred cccccc
Q 014712 374 TGKHSP 379 (420)
Q Consensus 374 sgadl~ 379 (420)
||.+|.
T Consensus 577 SGREia 582 (630)
T KOG0742|consen 577 SGREIA 582 (630)
T ss_pred cHHHHH
Confidence 999988
No 47
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.8e-19 Score=180.85 Aligned_cols=199 Identities=19% Similarity=0.200 Sum_probs=155.0
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~ 275 (420)
..+.++||+||+|||||.|+++++.++ .+.+..++|+.+.........+.++.+|..+.+++|+||+||++|.|++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 345689999999999999999999976 4678889999999888888999999999999999999999999999998
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHhc-CC-cCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHh
Q 014712 276 ARFDDGVGGDNEVQRTMLEIVNQLD-GF-DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~-~~-~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
... ...+.+......+..+++++- .+ ..+..+.+|++.+....++|.|.+|++|+.++.++.|+..+|.+||+..+.
T Consensus 509 ~s~-~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 509 ASS-NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred cCc-ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHH
Confidence 332 222334444455555554432 12 223457899999999999999999999999999999999999999999996
Q ss_pred cCCCC-CCccHHHHHhhCCCCccccccccc------------ccc--ccChhhHHHHHHHH
Q 014712 354 TMNCE-RDIRFELLSRLCPNSTGKHSPFRS------------CFM--VNPHDDYCKMLYVY 399 (420)
Q Consensus 354 ~~~~~-~~v~l~~la~~t~g~sgadl~~~~------------~~~--~~~~~d~~~~~~~~ 399 (420)
+.... ..-|++.++..|+||...|+.... +.- ..+.++|.++++.+
T Consensus 588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F 648 (952)
T KOG0735|consen 588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDF 648 (952)
T ss_pred hhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhc
Confidence 65422 223455599999999999998222 211 44557777777544
No 48
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=6.3e-18 Score=183.76 Aligned_cols=193 Identities=23% Similarity=0.341 Sum_probs=152.3
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CC
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 228 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~ 228 (420)
.+...+-.+++++|.++.+..+.+.+.. ....+++|+||||||||++|+++|..+ +.
T Consensus 173 ~~~~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~ 239 (731)
T TIGR02639 173 TEKAKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNA 239 (731)
T ss_pred HHHHhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCC
Confidence 3445667888999999999998887765 234589999999999999999999986 77
Q ss_pred cEEEEecchhh--hhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCC
Q 014712 229 CFIRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (420)
Q Consensus 229 ~~i~v~~~~l~--~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (420)
.++.+++..+. .+|.|+.+..++.+|+.+....++||||||+|.+.+.+.. .+++...++.+...+. ++
T Consensus 240 ~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~~~~~L~~~l~-------~g 310 (731)
T TIGR02639 240 KIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMDASNLLKPALS-------SG 310 (731)
T ss_pred eEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHHHHHHHHHHHh-------CC
Confidence 88999988887 4788999999999999998878999999999999876422 2233445555554442 57
Q ss_pred CeEEEEEeCCC-----CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcC----CCC-CCccHHHHHhhCCCCccc
Q 014712 307 NIKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLSRLCPNSTGK 376 (420)
Q Consensus 307 ~v~vI~ttn~~-----~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~----~~~-~~v~l~~la~~t~g~sga 376 (420)
.+.+|++||.. -..|+++.| ||. .|.++.|+.+++.+|++.....+ ++. .+..+..++.++..|-+.
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 89999999963 357999999 995 79999999999999999766542 221 334477888888887664
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=1.5e-17 Score=164.76 Aligned_cols=188 Identities=19% Similarity=0.239 Sum_probs=138.5
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
..+.++.+|++++|+++.++.+..++..... .-.++.+++||||||||||++|+++|++++..+..++++.+
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~ 87 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc
Confidence 3456778999999999999999988864211 12456789999999999999999999999998877766543
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc------C-Cc------CC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------G-FD------AR 305 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~-~~------~~ 305 (420)
.. ...+..++.. ...+++|||||||.+. ...+..+..+++... . .. ..
T Consensus 88 ~~------~~~l~~~l~~--l~~~~vl~IDEi~~l~-----------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 88 EK------PGDLAAILTN--LEEGDVLFIDEIHRLS-----------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred cC------hHHHHHHHHh--cccCCEEEEecHhhcc-----------hHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 21 1122333332 2456799999999982 334455555554321 0 00 11
Q ss_pred CCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcc
Q 014712 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 306 ~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sg 375 (420)
.++.+|++||++..++++|++ ||...+.|+.|+.+++.+|++..+...++. ++..+..|+..+.|...
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR 217 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPR 217 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCch
Confidence 347899999999999999988 999999999999999999999998766554 22347889999999765
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=5.7e-18 Score=165.42 Aligned_cols=174 Identities=29% Similarity=0.437 Sum_probs=132.0
Q ss_pred ccCCCCccccccccHHHHH---HHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 160 EEKPDVTYNDVGGCKEQIE---KMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 160 ~~~~~~~~~~i~G~~~~~~---~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
..-++.++++++|++..+. -|+.+++. ....+++|||||||||||||+.+|+.++..|..+++.
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 3456789999999998773 45666654 2345899999999999999999999999999999874
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEE
Q 014712 237 ELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 312 (420)
. .+-+-++.+++.|+. +...|||||||+++ +...|..++..++ ++.+++|+
T Consensus 83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE-------~G~iilIG 137 (436)
T COG2256 83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE-------NGTIILIG 137 (436)
T ss_pred c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc-------CCeEEEEe
Confidence 3 355677888888854 23479999999998 5667788877765 67788888
Q ss_pred Ee--CCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH--hcCCCC------CCccHHHHHhhCCCCc
Q 014712 313 AT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT--RTMNCE------RDIRFELLSRLCPNST 374 (420)
Q Consensus 313 tt--n~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~--~~~~~~------~~v~l~~la~~t~g~s 374 (420)
+| |..-.+.++|++ |. +++.+.+.+.++..++++..+ ...++. ++.-++.|+..+.|=.
T Consensus 138 ATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 138 ATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred ccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 66 344679999999 77 789999999999999998844 222332 2223566777777733
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.7e-17 Score=155.37 Aligned_cols=200 Identities=19% Similarity=0.271 Sum_probs=152.7
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 241 (420)
.++..|++.+|+++.+++|+=+++.. +..-....++|||||||.||||||+.+|++++.++-..+++-+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AA--------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAA--------KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHH--------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 45789999999999999999988773 2234567799999999999999999999999999888887765321
Q ss_pred hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc-------CCcC------CCCe
Q 014712 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFDA------RGNI 308 (420)
Q Consensus 242 ~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-------~~~~------~~~v 308 (420)
| -+-.++.. -...+|+|||||+++ ++.+...|+..++... |... -..+
T Consensus 92 --g----DlaaiLt~--Le~~DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 92 --G----DLAAILTN--LEEGDVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred --h----hHHHHHhc--CCcCCeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 1 12222222 244579999999998 5667778877776532 1111 2368
Q ss_pred EEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccccccccccc
Q 014712 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSPFRSCFMVN 387 (420)
Q Consensus 309 ~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~~~~~~~~~ 387 (420)
.+|++|.+...|...|+. ||.....+..++.++..+|++...+.+++. .+....++|+.+.|...-.. |++.
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAn-----RLLr 225 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIAN-----RLLR 225 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHH-----HHHH
Confidence 899999999999999999 999999999999999999999999888876 33456789999999776332 3344
Q ss_pred ChhhHHHH
Q 014712 388 PHDDYCKM 395 (420)
Q Consensus 388 ~~~d~~~~ 395 (420)
...||+..
T Consensus 226 RVRDfa~V 233 (332)
T COG2255 226 RVRDFAQV 233 (332)
T ss_pred HHHHHHHH
Confidence 44566553
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=99.75 E-value=2.9e-17 Score=170.80 Aligned_cols=185 Identities=28% Similarity=0.366 Sum_probs=136.8
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
.+|+++++|.++++|+|++.+++.|+.++..+.. | .+++++|||||||||||++|+++|++++..++.+++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 4689999999999999999999999999976432 1 347889999999999999999999999999999998
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHh------CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeE
Q 014712 236 SELVQKYVGEGARMVRELFQMARS------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (420)
++.... ..++.+...+.. ..+.+|+|||+|.+.+. .+......+..++. ..+..
T Consensus 73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~-------~~~~~ 132 (482)
T PRK04195 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIK-------KAKQP 132 (482)
T ss_pred cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHH-------cCCCC
Confidence 875422 122222222211 25679999999998542 23344555555554 23456
Q ss_pred EEEEeCCCCCCCc-cccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 310 VLMATNRPDTLDP-ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 310 vI~ttn~~~~ld~-al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
+|+++|.+..+.+ .+++ |+ ..+.|+.|+..+...+++..+...++. ++..++.|+..+.|
T Consensus 133 iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 133 IILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred EEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888999888877 5655 55 789999999999999999998766553 22346677776654
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.74 E-value=3.8e-17 Score=160.19 Aligned_cols=181 Identities=18% Similarity=0.243 Sum_probs=131.1
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhh
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE 245 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~ 245 (420)
+|++++|+++.++.|+.++...... -..+.+++||||||||||++|+++|++++..+..+.++.... .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~-- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P-- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c--
Confidence 6889999999999999988642211 134567999999999999999999999998876665543221 1
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC-------C------cCCCCeEEEE
Q 014712 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-------F------DARGNIKVLM 312 (420)
Q Consensus 246 ~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~-------~------~~~~~v~vI~ 312 (420)
..+...+.. ...+.+|||||++.+ +...+..+..+++.... . .....+.+|+
T Consensus 70 --~~l~~~l~~--~~~~~vl~iDEi~~l-----------~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 70 --GDLAAILTN--LEEGDVLFIDEIHRL-----------SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred --hhHHHHHHh--cccCCEEEEehHhhh-----------CHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 111222222 245679999999998 33445556666553221 0 0123478999
Q ss_pred EeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcc
Q 014712 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 313 ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sg 375 (420)
+||++..+++++++ ||...+.|++|+.++..++++..+...++. ++..++.+++.+.|...
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR 196 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPR 196 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc
Confidence 99999999999998 998899999999999999999888655443 22346788999988764
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=2e-17 Score=180.86 Aligned_cols=166 Identities=26% Similarity=0.386 Sum_probs=125.8
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh---------
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV--------- 239 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~--------- 239 (420)
++.|++++++.+.+++..+... +-..+.+++|+||||||||++|+++|+.++.+|+.+++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4899999999999987653222 112334799999999999999999999999999999765432
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHh--cCCc--------CCCCeE
Q 014712 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGFD--------ARGNIK 309 (420)
Q Consensus 240 ~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--~~~~--------~~~~v~ 309 (420)
..|.|.....+...|..+....| ||||||||.+.... .++ ...+|+++++.. ..|. ..++++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-----~~~--~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-----RGD--PASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-----CCC--HHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 24566666677777887766666 89999999997532 112 245666666421 1111 125789
Q ss_pred EEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 310 vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
+|+|||.++.++++|++ || ..|+|+.|+.+++.+|++.++
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 99999999999999999 99 588999999999999998876
No 55
>PLN03025 replication factor C subunit; Provisional
Probab=99.74 E-value=4.3e-17 Score=160.93 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=130.6
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC-----CcEE
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACFI 231 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i 231 (420)
+|+++++|.++++++|++++++.|+.++.. ....++|||||||||||++|+++|+++. ..++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 488999999999999999999999988764 1223699999999999999999999872 2355
Q ss_pred EEecchhhhhhhhhhHHHHHHHHHHH-H------hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 232 RVIGSELVQKYVGEGARMVRELFQMA-R------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 232 ~v~~~~l~~~~~g~~~~~v~~~f~~a-~------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
.++.++..+ ...++...... . ...+.|++|||+|.+ +...|..+...++..
T Consensus 69 eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~----- 126 (319)
T PLN03025 69 ELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY----- 126 (319)
T ss_pred eeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc-----
Confidence 666554321 12233332221 1 134579999999998 455677777777542
Q ss_pred CCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 305 ~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
...+.+|++||..+.+.+++++ |+ ..+.|+.|+.++....++..+++.++. .+..+..++..+.|
T Consensus 127 ~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 127 SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3446688899998889899998 77 689999999999999999888765543 22346666666654
No 56
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.2e-17 Score=169.63 Aligned_cols=189 Identities=46% Similarity=0.726 Sum_probs=169.0
Q ss_pred cccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEE
Q 014712 186 LPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV 265 (420)
Q Consensus 186 ~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il 265 (420)
.|+.+++.|..+++.++++++++||||+|||++++++|.. +..+..+++++...++.|..+...+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678899999999999999999999999999999999999 766688999999999999999999999999999999999
Q ss_pred EecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHH
Q 014712 266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (420)
Q Consensus 266 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~ 345 (420)
++|++|.+.+.+.... .........+++..++++. ...+.+++.+|++..++++++++|||++.+.+..|+...+.
T Consensus 81 ~~d~~~~~~~~~~~~~---~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQ---GEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccc---cchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 9999999999886522 2223345556666666666 44488888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 346 QIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 346 ~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
+|++.+.+.+....+.+...++..+.|++++++.
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 190 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLG 190 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHH
Confidence 9999999999888889999999999999999998
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.73 E-value=4e-17 Score=176.15 Aligned_cols=190 Identities=23% Similarity=0.346 Sum_probs=144.4
Q ss_pred ccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CCc
Q 014712 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (420)
Q Consensus 160 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~~ 229 (420)
+....-.++.++|.++.++.+.+.+.. ....++||+||||||||++|+++|... ++.
T Consensus 178 ~~a~~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~ 244 (758)
T PRK11034 178 QLARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCT 244 (758)
T ss_pred HHHHcCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCe
Confidence 334556677899999999999998876 234578999999999999999999864 556
Q ss_pred EEEEecchhh--hhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCC
Q 014712 230 FIRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (420)
Q Consensus 230 ~i~v~~~~l~--~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (420)
++.++...+. .+|.|+.+..++.+|..+....++||||||||.+++.+.. .++..+..+.+..++. ++.
T Consensus 245 ~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~-------~g~ 315 (758)
T PRK11034 245 IYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLS-------SGK 315 (758)
T ss_pred EEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHh-------CCC
Confidence 6666666555 4578889999999999888888899999999999876532 1233444445555443 678
Q ss_pred eEEEEEeCCCC-----CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccH-----HHHHhhCCCCc
Q 014712 308 IKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRF-----ELLSRLCPNST 374 (420)
Q Consensus 308 v~vI~ttn~~~-----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l-----~~la~~t~g~s 374 (420)
+.+|++|+.++ ..|++|.| ||+ .|.++.|+.+++..||+.+..++....++++ ...+.++..|.
T Consensus 316 i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 316 IRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred eEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 99999999864 57999999 995 8999999999999999988776655544443 34445555543
No 58
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.7e-18 Score=177.87 Aligned_cols=270 Identities=21% Similarity=0.320 Sum_probs=177.9
Q ss_pred hhHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCC
Q 014712 21 DDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSE 100 (420)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (420)
|++++..+.... .+..+.+++.++..++.++..+. +++| +.+ -.+......... -.+....+.+..
T Consensus 387 DeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~--~e~~-~~~----k~~~~~~~~~~~---~~~~~~~~~~~~--- 452 (786)
T COG0542 387 DEAGARVRLEID-KPEELDELERELAQLEIEKEALE--REQD-EKE----KKLIDEIIKLKE---GRIPELEKELEA--- 452 (786)
T ss_pred HHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHh--hhhh-HHH----HHHHHHHHHHhh---hhhhhHHHHHhh---
Confidence 678888888887 89999999999999999999998 5553 000 001111111110 000000000000
Q ss_pred CCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHH
Q 014712 101 DSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKM 180 (420)
Q Consensus 101 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l 180 (420)
. |....++. +|+-...++...+..+++..+... . ..--..|+|+++++..+
T Consensus 453 --~--v~~~~Ia~-vv~~~TgIPv~~l~~~e~~kll~l----e--------------------~~L~~rViGQd~AV~av 503 (786)
T COG0542 453 --E--VDEDDIAE-VVARWTGIPVAKLLEDEKEKLLNL----E--------------------RRLKKRVIGQDEAVEAV 503 (786)
T ss_pred --c--cCHHHHHH-HHHHHHCCChhhhchhhHHHHHHH----H--------------------HHHhcceeChHHHHHHH
Confidence 0 22233333 333333444333333322211100 0 00112389999999999
Q ss_pred HHhhhcccCChhhhhhcCCCCC----CcceeeCCCCChHHHHHHHHHHhcC---CcEEEEecchhhhhh-----hhhhHH
Q 014712 181 REVVELPMLHPEKFVKLGIDPP----KGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQKY-----VGEGAR 248 (420)
Q Consensus 181 ~~~i~~~l~~~~~~~~~gi~~~----~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l~~~~-----~g~~~~ 248 (420)
..+|.. .+.|+..| .++||.||+|+|||-||+++|..+. ..++++++|+++.++ +|.++.
T Consensus 504 s~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPG 575 (786)
T COG0542 504 SDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPG 575 (786)
T ss_pred HHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCC
Confidence 999987 56666543 3688899999999999999999985 899999999998763 444444
Q ss_pred HH-----HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC------CCeEEEEEeCCC
Q 014712 249 MV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR------GNIKVLMATNRP 317 (420)
Q Consensus 249 ~v-----~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~------~~v~vI~ttn~~ 317 (420)
++ ..+.+..+.+.+|||+||||++- ++++.+.|+|+++.-.-.+.. .|++||||||-=
T Consensus 576 YVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~G 644 (786)
T COG0542 576 YVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAG 644 (786)
T ss_pred CceeccccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccc
Confidence 33 24566667788899999999995 899999999999864333333 368899999831
Q ss_pred ----------------------------CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 318 ----------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 318 ----------------------------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
..+.|++++ |+|.+|.|.+.+.+...+|+...+..
T Consensus 645 s~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 645 SEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred hHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 123567777 99999999999999999999887754
No 59
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=6.8e-17 Score=164.53 Aligned_cols=183 Identities=17% Similarity=0.233 Sum_probs=135.6
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
+.+++++.+|++++|++.++..|+.++... ..+..+|||||+|||||++|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 567889999999999999999999988751 234468999999999999999999988653
Q ss_pred ----------------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
++.+++.. ..+...++++...+. .+...|+||||+|.+ +.+.+
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~ 138 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSF 138 (484)
T ss_pred CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHH
Confidence 22222211 112233454444332 345679999999998 45566
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.|+..+++ +..++++|++|+.++.+.+++++ |+ ..+.|..++..+-.+.++..+...++. ++..+..|++
T Consensus 139 NALLKtLEE-----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 139 NALLKTLEE-----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred HHHHHHhhc-----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666655543 45788999999999999999999 88 678999999988888898888766554 3345778888
Q ss_pred hCCCCcccc
Q 014712 369 LCPNSTGKH 377 (420)
Q Consensus 369 ~t~g~sgad 377 (420)
.++|-....
T Consensus 211 ~S~Gd~RdA 219 (484)
T PRK14956 211 KGDGSVRDM 219 (484)
T ss_pred HcCChHHHH
Confidence 888855433
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=1.4e-16 Score=168.06 Aligned_cols=184 Identities=16% Similarity=0.214 Sum_probs=137.5
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
..+++++.+|++|+|++..++.|+.++..- ..+..+||+||+|||||++|+++|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC 73 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC 73 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC
Confidence 457789999999999999999999998751 234568999999999999999999987642
Q ss_pred ----------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
++.++... ..+-..++.++..+.. ....|+||||+|.| +...+
T Consensus 74 G~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~ 136 (830)
T PRK07003 74 GVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAF 136 (830)
T ss_pred cccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHH
Confidence 22222211 1123345555555432 34579999999998 45566
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.|+..|++ ...++.+|++||.++.|.+.|++ || ..+.|..++.++..+.|+..+.+.++. ++..+..|++
T Consensus 137 NALLKtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 137 NAMLKTLEE-----PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred HHHHHHHHh-----cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777766664 35688999999999999999999 88 889999999999999999888765554 2334677888
Q ss_pred hCCCCccccc
Q 014712 369 LCPNSTGKHS 378 (420)
Q Consensus 369 ~t~g~sgadl 378 (420)
.+.|-...-|
T Consensus 209 ~A~GsmRdAL 218 (830)
T PRK07003 209 AAQGSMRDAL 218 (830)
T ss_pred HcCCCHHHHH
Confidence 8888554333
No 61
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.70 E-value=5.6e-16 Score=153.70 Aligned_cols=185 Identities=19% Similarity=0.309 Sum_probs=131.4
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC-----CcE
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 230 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~ 230 (420)
.+|.+++.+.+|++++|++.+++.|..++.. ....+++||||||||||++|+++++++. .++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~ 69 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccce
Confidence 4799999999999999999999999998865 1223699999999999999999999873 356
Q ss_pred EEEecchhhhhh-------------hhh-------hHHHHHHHHHHHHh-----CCCcEEEecCcccccCCccCCCCCCC
Q 014712 231 IRVIGSELVQKY-------------VGE-------GARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGD 285 (420)
Q Consensus 231 i~v~~~~l~~~~-------------~g~-------~~~~v~~~f~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~ 285 (420)
+.++++++.... .+. ....++.+...... ..+.+|+|||+|.+ +
T Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~ 138 (337)
T PRK12402 70 TEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------R 138 (337)
T ss_pred EEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------C
Confidence 788877654221 011 11223333322222 33469999999987 3
Q ss_pred HHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHH
Q 014712 286 NEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFE 364 (420)
Q Consensus 286 ~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~ 364 (420)
...+..+..+++.. .....+|++++.+..+.+.+.+ |+ ..+.|.+|+.++...+++..+++.++. ++..++
T Consensus 139 ~~~~~~L~~~le~~-----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 139 EDAQQALRRIMEQY-----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHHHHHhc-----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45566676666543 2345577777777777788887 76 678999999999999999988766654 233466
Q ss_pred HHHhhCCC
Q 014712 365 LLSRLCPN 372 (420)
Q Consensus 365 ~la~~t~g 372 (420)
.|+..+.|
T Consensus 211 ~l~~~~~g 218 (337)
T PRK12402 211 LIAYYAGG 218 (337)
T ss_pred HHHHHcCC
Confidence 67766643
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=8.1e-17 Score=167.88 Aligned_cols=185 Identities=16% Similarity=0.239 Sum_probs=136.3
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
+.+++++.+|++|+|++.+++.|+.++..- +.+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 456789999999999999999999999751 234568999999999999999999988651
Q ss_pred ---------------------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCC
Q 014712 230 ---------------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGG 284 (420)
Q Consensus 230 ---------------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~ 284 (420)
++.++... ..+-..++++.+.+. .+...|+||||+|.|
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------- 136 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------- 136 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------
Confidence 22222211 112334555554433 345679999999998
Q ss_pred CHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCC-ccH
Q 014712 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-IRF 363 (420)
Q Consensus 285 ~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~-v~l 363 (420)
+...++.|+..|++ +..++++|++||.++.|.+.+++ |+ ..+.|..++.++..+.++..+.+.++.-+ ..+
T Consensus 137 s~~AaNALLKTLEE-----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL 208 (700)
T PRK12323 137 TNHAFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNAL 208 (700)
T ss_pred CHHHHHHHHHhhcc-----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHH
Confidence 44555655555543 45788999999999999999999 88 88999999999999988888766555422 236
Q ss_pred HHHHhhCCCCcccccc
Q 014712 364 ELLSRLCPNSTGKHSP 379 (420)
Q Consensus 364 ~~la~~t~g~sgadl~ 379 (420)
..|++.+.|-.+.-+.
T Consensus 209 ~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 209 RLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHcCCCHHHHHH
Confidence 7788888886654443
No 63
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.70 E-value=2.2e-16 Score=155.46 Aligned_cols=165 Identities=22% Similarity=0.326 Sum_probs=124.0
Q ss_pred cccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEe
Q 014712 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 234 (420)
..+|+++++|.+|++++|++..++.++.++.. | ..|..+||+||||+|||++|++++++.+..++.++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 34689999999999999999999999999864 1 23556777999999999999999999999999998
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHH-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 235 GSELVQKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
+++ . . .......+........ ...+.+|+|||+|.+. ..+.+..+..+++.. ..++.+|++
T Consensus 76 ~~~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt 137 (316)
T PHA02544 76 GSD-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIIT 137 (316)
T ss_pred cCc-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEE
Confidence 876 1 1 2111121222111111 1356799999999872 344566666666643 356789999
Q ss_pred eCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 314 tn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
||.++.+.+++++ || ..+.|+.|+.+++..+++.+.
T Consensus 138 ~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 138 ANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred cCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999 88 578999999999988876544
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=3.3e-16 Score=161.34 Aligned_cols=178 Identities=17% Similarity=0.252 Sum_probs=127.8
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC---------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--------- 228 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--------- 228 (420)
+.++++|.+|++++|++.+++.|+.++... ..+.++|||||||||||++|+++|+.+++
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc 71 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC 71 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence 346789999999999999999999887651 24556899999999999999999998764
Q ss_pred ---------------cEEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 229 ---------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 229 ---------------~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
.++.++++. ..+-..++.+...+.. ....||||||+|.+ +...+
T Consensus 72 ~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~ 134 (472)
T PRK14962 72 NECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAF 134 (472)
T ss_pred cccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHH
Confidence 244444321 1122344555444432 34569999999998 23345
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
..++..+.. +.+.+++|++|+.+..+++++++ |+ ..+.|.+|+..+...+++..+...++. ++..+..|+.
T Consensus 135 ~~LLk~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 135 NALLKTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred HHHHHHHHh-----CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555544442 34578888888888899999999 88 689999999999999999888654433 2233667777
Q ss_pred hCCC
Q 014712 369 LCPN 372 (420)
Q Consensus 369 ~t~g 372 (420)
.+.|
T Consensus 207 ~s~G 210 (472)
T PRK14962 207 RASG 210 (472)
T ss_pred HhCC
Confidence 6654
No 65
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.69 E-value=1.9e-16 Score=149.77 Aligned_cols=183 Identities=17% Similarity=0.232 Sum_probs=135.4
Q ss_pred cccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-----
Q 014712 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----- 229 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~----- 229 (420)
...|++++.+.+|+++.|++.+++.|+..+.. ....++|||||||||||+.|+++|+++.++
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~ 89 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPC 89 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcccccc
Confidence 34589999999999999999999999999875 123379999999999999999999988652
Q ss_pred -EEEEecchhhhhhhhhhHHHHHHHHHHHHh---------CC-CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHH
Q 014712 230 -FIRVIGSELVQKYVGEGARMVRELFQMARS---------KK-ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (420)
Q Consensus 230 -~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~---------~~-p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (420)
+...+.++..+..+.. ..+. -|..... .+ +.|++|||.|.+ ..+.|.+|...++.
T Consensus 90 rvl~lnaSderGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 90 RVLELNASDERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED 155 (346)
T ss_pred chhhhcccccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc
Confidence 2333444433332211 1111 1222211 12 269999999998 57788888887764
Q ss_pred hcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 299 l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
....+.+|..||..+.+.+.+.+ |+ .++.|+....+.....|+..+.+.++. ++-.+..|+..++|
T Consensus 156 -----~s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 156 -----FSRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred -----cccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 25678899999999999999998 88 678898888888888888888777665 22336777887776
No 66
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=4.5e-16 Score=170.85 Aligned_cols=191 Identities=20% Similarity=0.269 Sum_probs=145.2
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CC
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 228 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~ 228 (420)
.+...+-++++++|.++.+.++.+++.. ....+++|+||||||||++|+.+|..+ +.
T Consensus 178 ~~~~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~ 244 (852)
T TIGR03345 178 TAQAREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNV 244 (852)
T ss_pred HHHhcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCC
Confidence 3445677889999999998888887765 234478999999999999999999975 35
Q ss_pred cEEEEecchhh--hhhhhhhHHHHHHHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC
Q 014712 229 CFIRVIGSELV--QKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (420)
Q Consensus 229 ~~i~v~~~~l~--~~~~g~~~~~v~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (420)
.++.++...+. ..+.|+.+..++.+|..+.. ..++||||||+|.+.+.+... +..+..+.|...+ .+
T Consensus 245 ~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~n~Lkp~l-------~~ 314 (852)
T TIGR03345 245 RLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGDAANLLKPAL-------AR 314 (852)
T ss_pred eEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---ccccHHHHhhHHh-------hC
Confidence 57777777665 35788999999999998864 567899999999998765321 1122223343333 26
Q ss_pred CCeEEEEEeCCC-----CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCC----CC-CCccHHHHHhhCCCCcc
Q 014712 306 GNIKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 306 ~~v~vI~ttn~~-----~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~----~~-~~v~l~~la~~t~g~sg 375 (420)
+.+.+|+||+.. -.+|++|.| || ..|.++.|+.+++..||+.+.+.+. +. .+..+..++.++.+|.+
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 789999999864 348999999 99 5899999999999999877665433 21 34457888999998876
No 67
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.68 E-value=4.1e-16 Score=171.55 Aligned_cols=191 Identities=23% Similarity=0.306 Sum_probs=146.6
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CC
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 228 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~ 228 (420)
.+...+-.++.++|.+..++++.+.+.. ....+++|+||||||||++|+++|..+ +.
T Consensus 169 ~~~~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~ 235 (857)
T PRK10865 169 TERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGR 235 (857)
T ss_pred HHHHhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCC
Confidence 3445667888999999998888888876 234579999999999999999999987 67
Q ss_pred cEEEEecchhh--hhhhhhhHHHHHHHHHHHH-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC
Q 014712 229 CFIRVIGSELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (420)
Q Consensus 229 ~~i~v~~~~l~--~~~~g~~~~~v~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (420)
+++.++...+. .+|.|+.+..++.+|..+. ...++||||||+|.+.+.+.+ .+..+.++.|...+ .+
T Consensus 236 ~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~~~~lkp~l-------~~ 305 (857)
T PRK10865 236 RVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPAL-------AR 305 (857)
T ss_pred EEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhHHHHhcchh-------hc
Confidence 88888888766 4578899999999998754 457889999999999876532 22334455554443 36
Q ss_pred CCeEEEEEeCCCC-----CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCC-----CccHHHHHhhCCCCcc
Q 014712 306 GNIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-----DIRFELLSRLCPNSTG 375 (420)
Q Consensus 306 ~~v~vI~ttn~~~-----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~-----~v~l~~la~~t~g~sg 375 (420)
+.+.+|++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++....++.... +..+...+.++..|..
T Consensus 306 g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~ 382 (857)
T PRK10865 306 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIA 382 (857)
T ss_pred CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcccc
Confidence 7899999999876 48999999 996 578999999999999988776554332 2234445567776663
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.68 E-value=7.5e-16 Score=157.29 Aligned_cols=174 Identities=29% Similarity=0.433 Sum_probs=127.9
Q ss_pred ccccCCCCccccccccHHHHHH---HHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEe
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEK---MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~---l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 234 (420)
+.+..++.++++++|++..+.. ++.++.. ....+++||||||||||++|+++|+.++..|+.++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 4567788999999999999777 8888764 23447999999999999999999999999999998
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEE
Q 014712 235 GSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (420)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 310 (420)
+... +...++.++..+. .....+|||||+|.+ +...+..++..++ .+.+++
T Consensus 69 a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le-------~~~iil 123 (413)
T PRK13342 69 AVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVE-------DGTITL 123 (413)
T ss_pred cccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhh-------cCcEEE
Confidence 7542 2233444555442 235679999999998 4556666666554 345667
Q ss_pred EEEeC--CCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcC-----CCCCCccHHHHHhhCCCC
Q 014712 311 LMATN--RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM-----NCERDIRFELLSRLCPNS 373 (420)
Q Consensus 311 I~ttn--~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~-----~~~~~v~l~~la~~t~g~ 373 (420)
|++|+ ....+++++++ |+ ..+.|++++.++...+++..+... .+. +..+..+++.+.|-
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~Gd 189 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANGD 189 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCCC
Confidence 76653 33578899999 88 789999999999999998877542 222 22356777777553
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=6.9e-16 Score=161.32 Aligned_cols=180 Identities=16% Similarity=0.195 Sum_probs=133.8
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC----------
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---------- 228 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~---------- 228 (420)
.+++++.+|++|+|++.+++.|+.++.. -..+..+||+||+|+|||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 4678899999999999999999999975 134567899999999999999999998765
Q ss_pred --------------cEEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHH
Q 014712 229 --------------CFIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (420)
Q Consensus 229 --------------~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (420)
.++.++++.- .+...+|.+...+. .+...|+||||+|.+ +...++
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~N 136 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFN 136 (702)
T ss_pred cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHH
Confidence 2333333211 12334555554432 245579999999998 455666
Q ss_pred HHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhh
Q 014712 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRL 369 (420)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~ 369 (420)
.++..+++ +...+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+.+.++. .+..+..|++.
T Consensus 137 ALLKtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 137 ALLKTLEE-----PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHHHHHhc-----CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67666664 34677889999988888888887 88 789999999999999998888766554 23346778888
Q ss_pred CCCCcc
Q 014712 370 CPNSTG 375 (420)
Q Consensus 370 t~g~sg 375 (420)
+.|-.+
T Consensus 209 S~GdLR 214 (702)
T PRK14960 209 AQGSLR 214 (702)
T ss_pred cCCCHH
Confidence 776433
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=5.2e-16 Score=156.49 Aligned_cols=183 Identities=20% Similarity=0.310 Sum_probs=129.8
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcE---------------
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF--------------- 230 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~--------------- 230 (420)
.|++|+|++.+++.|+.++..+... +...+...+.++||+||+|+|||++|+++|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 5889999999999999999875432 2223444677899999999999999999999764431
Q ss_pred --------EEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHH
Q 014712 231 --------IRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (420)
Q Consensus 231 --------i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (420)
..+.. +-. .-+-..++.++..+.. ....|+||||+|.+ +...++.|+..+++
T Consensus 80 ~~~~hpD~~~i~~-~~~----~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAP-EGL----SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecc-ccc----cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhhc
Confidence 11111 100 1122346677766543 34569999999998 45556666666653
Q ss_pred hcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccc
Q 014712 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHS 378 (420)
Q Consensus 299 l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl 378 (420)
+..++++|++|+.++.+.|++++ |+ ..+.|++|+.++..+++.. +.++. ......++..+.|..|..+
T Consensus 144 -----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~---~~~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 144 -----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR---RDGVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred -----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH---hcCCC-HHHHHHHHHHcCCCHHHHH
Confidence 34566677777779999999999 88 7999999999987776653 22333 2346688999999988665
Q ss_pred c
Q 014712 379 P 379 (420)
Q Consensus 379 ~ 379 (420)
.
T Consensus 212 ~ 212 (394)
T PRK07940 212 R 212 (394)
T ss_pred H
Confidence 5
No 71
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1e-15 Score=161.80 Aligned_cols=184 Identities=20% Similarity=0.273 Sum_probs=136.9
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---------
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~--------- 229 (420)
.+++++.+|++|+|++.+++.|+..+..- ..+..+||+||+|+|||++|+++|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 45678899999999999999999988751 234458999999999999999999988653
Q ss_pred ---------------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHH
Q 014712 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (420)
Q Consensus 230 ---------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (420)
++.+++.. ..+-..+|.+...+. .+...|+||||+|.+ +...++
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~N 137 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFN 137 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHH
Confidence 22233221 012233444444432 345669999999998 566677
Q ss_pred HHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhh
Q 014712 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRL 369 (420)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~ 369 (420)
.|+..|++ +.+++++|++|+.+..|.+.+++ |+ ..+.|..++.++-...|+..+...++. ++..+..|+..
T Consensus 138 ALLKtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 138 ALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA 209 (647)
T ss_pred HHHHHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777764 46788899999999999999999 87 899999999999999998888665544 23446778888
Q ss_pred CCCCcccccc
Q 014712 370 CPNSTGKHSP 379 (420)
Q Consensus 370 t~g~sgadl~ 379 (420)
+.|-.+.-+.
T Consensus 210 s~Gs~R~Al~ 219 (647)
T PRK07994 210 ADGSMRDALS 219 (647)
T ss_pred cCCCHHHHHH
Confidence 8886664433
No 72
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.1e-15 Score=153.48 Aligned_cols=181 Identities=17% Similarity=0.229 Sum_probs=130.5
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
..++++|.+|++|+|++..++.++.++... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc 73 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPC 73 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456789999999999999999999888651 235568999999999999999999987542
Q ss_pred ----------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
++.+++.. ......++.+...+.. ....|++|||+|.+ +...+
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~ 136 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSF 136 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHH
Confidence 12222111 0122335555554332 23469999999998 34445
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.++..+++ +..++.+|++|+.++.+.+++++ |+ ..++|++|+.++..++++..+++.+.. ++..+..++.
T Consensus 137 naLLk~lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~ 208 (363)
T PRK14961 137 NALLKTLEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAY 208 (363)
T ss_pred HHHHHHHhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555543 35677888888888889999988 87 789999999999999999988776543 3334677888
Q ss_pred hCCCCcc
Q 014712 369 LCPNSTG 375 (420)
Q Consensus 369 ~t~g~sg 375 (420)
.+.|-.+
T Consensus 209 ~s~G~~R 215 (363)
T PRK14961 209 HAHGSMR 215 (363)
T ss_pred HcCCCHH
Confidence 8776433
No 73
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.66 E-value=8.2e-16 Score=169.20 Aligned_cols=190 Identities=26% Similarity=0.367 Sum_probs=147.3
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CCcE
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 230 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~ 230 (420)
....-.++.++|.++.++++.+++.. ...++++|+||||||||++|+.+|... +..+
T Consensus 172 ~a~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i 238 (821)
T CHL00095 172 EAIDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLV 238 (821)
T ss_pred HHHcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 34556788899999999999999876 345689999999999999999999975 4788
Q ss_pred EEEecchhh--hhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCe
Q 014712 231 IRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (420)
Q Consensus 231 i~v~~~~l~--~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (420)
+.+++..+. .+|.|+.+..++.+|+.+....++||||||||.+.+.+... ++....+.|...+. ++.+
T Consensus 239 ~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a~lLkp~l~-------rg~l 308 (821)
T CHL00095 239 ITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDAANILKPALA-------RGEL 308 (821)
T ss_pred EEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccHHHHhHHHHh-------CCCc
Confidence 999988876 46789999999999999988888999999999998765322 22234444444332 6789
Q ss_pred EEEEEeCCCC-----CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc----CCCC-CCccHHHHHhhCCCCccc
Q 014712 309 KVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT----MNCE-RDIRFELLSRLCPNSTGK 376 (420)
Q Consensus 309 ~vI~ttn~~~-----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~----~~~~-~~v~l~~la~~t~g~sga 376 (420)
.+|++|+..+ ..|+++.+ || ..+.++.|+.++...|++..... .++. .+..+..++.++.+|.+.
T Consensus 309 ~~IgaTt~~ey~~~ie~D~aL~r--Rf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~ 383 (821)
T CHL00095 309 QCIGATTLDEYRKHIEKDPALER--RF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIAD 383 (821)
T ss_pred EEEEeCCHHHHHHHHhcCHHHHh--cc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Confidence 9999999753 47899999 99 46899999999998888754422 2221 233477888899988774
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.3e-15 Score=163.42 Aligned_cols=183 Identities=17% Similarity=0.211 Sum_probs=134.6
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcE-------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF------- 230 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~------- 230 (420)
..+++++.+|++|+|++.+++.|+.++... +.+..+||+||+|||||++|+++|+.+++..
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pC 73 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC 73 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCC
Confidence 356788999999999999999999988751 2345679999999999999999999886641
Q ss_pred -----------------EEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 231 -----------------IRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 231 -----------------i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
+.+++.. ..+-..+|.+...+. .+...|+||||+|.| +.+.+
T Consensus 74 g~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAq 136 (944)
T PRK14949 74 GVCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSF 136 (944)
T ss_pred CCchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHH
Confidence 1111110 012233455444332 244569999999998 56677
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.|+..|++ +..++++|++|+.+..|.+.+++ |+ ..+.|..++.++....|+..+...++. .+-.+..|++
T Consensus 137 NALLKtLEE-----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~ 208 (944)
T PRK14949 137 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAK 208 (944)
T ss_pred HHHHHHHhc-----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777664 46678888889999999999998 88 889999999999999888888654443 2234677888
Q ss_pred hCCCCcccc
Q 014712 369 LCPNSTGKH 377 (420)
Q Consensus 369 ~t~g~sgad 377 (420)
.+.|-.+.-
T Consensus 209 ~S~Gd~R~A 217 (944)
T PRK14949 209 AANGSMRDA 217 (944)
T ss_pred HcCCCHHHH
Confidence 888866533
No 75
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.66 E-value=1.7e-15 Score=167.20 Aligned_cols=192 Identities=21% Similarity=0.307 Sum_probs=147.3
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CC
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 228 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~ 228 (420)
.+...+-.++.++|.+..+.++.+.+.. ....+++|+||||||||++|+++|..+ +.
T Consensus 164 ~~~~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~ 230 (852)
T TIGR03346 164 TERAREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNK 230 (852)
T ss_pred HHHhhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCC
Confidence 4455667888999999999888888766 234578999999999999999999975 66
Q ss_pred cEEEEecchhh--hhhhhhhHHHHHHHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC
Q 014712 229 CFIRVIGSELV--QKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (420)
Q Consensus 229 ~~i~v~~~~l~--~~~~g~~~~~v~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (420)
+++.++...+. .+|.|+.+..++.+|..+.. ..++||||||+|.+.+.+... +..+..+.|...+ .+
T Consensus 231 ~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~~~Lk~~l-------~~ 300 (852)
T TIGR03346 231 RLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAMDAGNMLKPAL-------AR 300 (852)
T ss_pred eEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chhHHHHHhchhh-------hc
Confidence 78888877765 46788899999999998865 468999999999998654221 2223333333322 36
Q ss_pred CCeEEEEEeCCCC-----CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCC-----ccHHHHHhhCCCCcc
Q 014712 306 GNIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-----IRFELLSRLCPNSTG 375 (420)
Q Consensus 306 ~~v~vI~ttn~~~-----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~-----v~l~~la~~t~g~sg 375 (420)
+.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+..++..... ..+...+.++.+|..
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 7899999999763 57999999 995 6889999999999999988776654433 346677888888866
Q ss_pred c
Q 014712 376 K 376 (420)
Q Consensus 376 a 376 (420)
.
T Consensus 378 ~ 378 (852)
T TIGR03346 378 D 378 (852)
T ss_pred c
Confidence 3
No 76
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=9e-16 Score=159.68 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=133.0
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
+.+++++.+|++|+|++.+++.|+.++..- ..+..+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 567899999999999999999999999651 235568999999999999999999987652
Q ss_pred ----------------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
++.+++.. ..+-..+|++...+. .+...|++|||+|.+ +...+
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~ 136 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSF 136 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHH
Confidence 33443321 122333555555433 244569999999998 45556
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.|+..+++ +...+.+|++|+.+..+.+.+++ |+ ..++|..++..+-...++..+++.++. ++..+..+++
T Consensus 137 naLLk~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 137 NALLKTLEE-----PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHHHHHhc-----cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666654 35678889999989889888988 77 778899899888888888888766654 2334667777
Q ss_pred hCCCCcc
Q 014712 369 LCPNSTG 375 (420)
Q Consensus 369 ~t~g~sg 375 (420)
.+.|-.+
T Consensus 209 ~s~GslR 215 (509)
T PRK14958 209 AANGSVR 215 (509)
T ss_pred HcCCcHH
Confidence 7776333
No 77
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.64 E-value=9e-16 Score=160.93 Aligned_cols=218 Identities=19% Similarity=0.303 Sum_probs=143.2
Q ss_pred CcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeC
Q 014712 130 GMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209 (420)
Q Consensus 130 g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~G 209 (420)
+.++++++.+......|.....-..+..+.+++++.+|++++|.+..++.++..+.. ..+.++||+|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~G 93 (531)
T TIGR02902 27 TNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYG 93 (531)
T ss_pred CCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEEC
Confidence 445555554433333333223335566778889999999999999999999876533 2356899999
Q ss_pred CCCChHHHHHHHHHHhc----------CCcEEEEecchhh-------hhhhhhh-------HHH---------HHHHHHH
Q 014712 210 PPGTGKTLLARAVANRT----------DACFIRVIGSELV-------QKYVGEG-------ARM---------VRELFQM 256 (420)
Q Consensus 210 ppGtGKT~Lakala~~~----------~~~~i~v~~~~l~-------~~~~g~~-------~~~---------v~~~f~~ 256 (420)
|||||||++|+++++.+ +.+|+.++|.... ....+.. ... -...+.
T Consensus 94 e~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~- 172 (531)
T TIGR02902 94 PPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT- 172 (531)
T ss_pred CCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh-
Confidence 99999999999998642 4689999986321 0111100 000 000111
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc---------CCc--------------CCCCeEEE-E
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD---------GFD--------------ARGNIKVL-M 312 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~---------~~~--------------~~~~v~vI-~ 312 (420)
.....+|||||++.+ +...|..|+.+++.-. +.+ ...++.+| +
T Consensus 173 --~a~gG~L~IdEI~~L-----------~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~A 239 (531)
T TIGR02902 173 --RAHGGVLFIDEIGEL-----------HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGA 239 (531)
T ss_pred --ccCCcEEEEechhhC-----------CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEE
Confidence 223469999999998 6788999988886521 000 01234555 4
Q ss_pred EeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc
Q 014712 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 313 ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~ 379 (420)
||+.++.+++++++ |+ ..+.|++++.+++.+|++..+++.++. ++..++.|+..+. ++.++.
T Consensus 240 Tt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~ 302 (531)
T TIGR02902 240 TTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAV 302 (531)
T ss_pred ecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHH
Confidence 56679999999999 88 578899999999999999999876654 2223555655543 444443
No 78
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.4e-15 Score=153.77 Aligned_cols=188 Identities=14% Similarity=0.186 Sum_probs=134.9
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE--
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV-- 233 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v-- 233 (420)
..+..++++.+|++++|++..++.|+.++.. -..+.++||+||+|||||++|+++|+.+++.....
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~ 76 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITEN 76 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccC
Confidence 3466788999999999999999999987764 13456899999999999999999999886532100
Q ss_pred ----------ecchhhhh----------hhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 234 ----------IGSELVQK----------YVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 234 ----------~~~~l~~~----------~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
+|..+... ....+...++.++..+.. ....|++|||+|.+ +...+
T Consensus 77 ~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~ 145 (507)
T PRK06645 77 TTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAF 145 (507)
T ss_pred cCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHH
Confidence 00011000 011234556677666543 34569999999988 34445
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.|+..+++ +...+++|++|+.++.+.+.+++ |+ ..+.|..++.++...+++..+++.+.. ++..+..|+.
T Consensus 146 naLLk~LEe-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 146 NALLKTLEE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HHHHHHHhh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555442 45678888888888899999998 87 678999999999999999999776654 2234677888
Q ss_pred hCCCCc
Q 014712 369 LCPNST 374 (420)
Q Consensus 369 ~t~g~s 374 (420)
.+.|-.
T Consensus 218 ~s~Gsl 223 (507)
T PRK06645 218 KSEGSA 223 (507)
T ss_pred HcCCCH
Confidence 777743
No 79
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.63 E-value=5e-16 Score=170.90 Aligned_cols=278 Identities=19% Similarity=0.268 Sum_probs=166.9
Q ss_pred hhHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCC-
Q 014712 21 DDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNS- 99 (420)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 99 (420)
|++++..+......+..+..++.++..+..+++.+. ++.+++.+ +.++........ . ...+...|....
T Consensus 395 d~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~--~----~~~~~~~~~~~~~ 464 (821)
T CHL00095 395 DEAGSRVRLINSRLPPAARELDKELREILKDKDEAI--REQDFETA--KQLRDREMEVRA--Q----IAAIIQSKKTEEE 464 (821)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH--hCcchHHH--HHHHHHHHHHHH--H----HHHHHHHHHhhhc
Confidence 346666666655567788889999999988888886 54444333 221111110000 0 111111121100
Q ss_pred -CCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHH
Q 014712 100 -EDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIE 178 (420)
Q Consensus 100 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~ 178 (420)
......|....++. +++-..+++...+..++.-.+. .+... --..|+|++.+++
T Consensus 465 ~~~~~~~v~~~~i~~-~~~~~tgip~~~~~~~~~~~l~----~l~~~--------------------L~~~v~GQ~~ai~ 519 (821)
T CHL00095 465 KRLEVPVVTEEDIAE-IVSAWTGIPVNKLTKSESEKLL----HMEET--------------------LHKRIIGQDEAVV 519 (821)
T ss_pred ccccCCccCHHHHHH-HHHHHHCCCchhhchhHHHHHH----HHHHH--------------------hcCcCcChHHHHH
Confidence 00012233333333 4444444444443332211000 00000 0123899999999
Q ss_pred HHHHhhhcccCChhhhhhcCCCC---C-CcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh-----hhhhh
Q 014712 179 KMREVVELPMLHPEKFVKLGIDP---P-KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK-----YVGEG 246 (420)
Q Consensus 179 ~l~~~i~~~l~~~~~~~~~gi~~---~-~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~-----~~g~~ 246 (420)
.+..++.. .+.|+.. | ..+||+||+|||||++|+++|..+ +.++++++++++... ..|..
T Consensus 520 ~l~~~i~~--------~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~ 591 (821)
T CHL00095 520 AVSKAIRR--------ARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSP 591 (821)
T ss_pred HHHHHHHH--------HhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCC
Confidence 99998875 2333322 2 348899999999999999999986 468999999887432 22222
Q ss_pred HHH-----HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc------CCCCeEEEEEeC
Q 014712 247 ARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNIKVLMATN 315 (420)
Q Consensus 247 ~~~-----v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v~vI~ttn 315 (420)
..+ .+.+....+.+..+||+|||+|.+ ++.+++.|+++++...-.+ ...+.++|+|||
T Consensus 592 ~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 592 PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred CcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 111 123455556666799999999987 7889999999987632111 125788999998
Q ss_pred CCCC-------------------------------------CCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 316 RPDT-------------------------------------LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 316 ~~~~-------------------------------------ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
.... +.|++++ |+|.++.|.+.+.++..+|+...+..
T Consensus 661 ~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 661 LGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred cchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 5311 2245666 99999999999999999998877754
No 80
>PRK08727 hypothetical protein; Validated
Probab=99.63 E-value=7.9e-15 Score=138.42 Aligned_cols=175 Identities=17% Similarity=0.275 Sum_probs=117.7
Q ss_pred cccCCCCcccc-ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014712 159 VEEKPDVTYND-VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (420)
Q Consensus 159 ~~~~~~~~~~~-i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~ 234 (420)
+...+..+|++ ++|.+.....++..... .....++||||+|||||||++++++++ +....+++
T Consensus 10 ~~~~~~~~f~~f~~~~~n~~~~~~~~~~~-------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDGLLAQLQALAAG-------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CCCCCcCChhhccCCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34456668887 56777666655544321 123469999999999999999998764 55666666
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
..++.. .+...+... ....+|+|||++.+.+ ....+..++.+++... ..+..+|+|+
T Consensus 77 ~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~---------~~~~~~~lf~l~n~~~----~~~~~vI~ts 133 (233)
T PRK08727 77 LQAAAG--------RLRDALEAL--EGRSLVALDGLESIAG---------QREDEVALFDFHNRAR----AAGITLLYTA 133 (233)
T ss_pred HHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccC---------ChHHHHHHHHHHHHHH----HcCCeEEEEC
Confidence 544332 122333332 3456999999998854 3445677778887753 2234577777
Q ss_pred CC-CCC---CCccccCcCcc--cEEEEccCCCHHHHHHHHHHHHhc--CCCCCCccHHHHHhhCCC
Q 014712 315 NR-PDT---LDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLSRLCPN 372 (420)
Q Consensus 315 n~-~~~---ld~al~r~gRf--d~~i~~~~Pd~~~R~~Il~~~~~~--~~~~~~v~l~~la~~t~g 372 (420)
|. |.. ++++|++ || ...+.++.|+.+++.+|++.++.. +.++++ .++.|+..++|
T Consensus 134 ~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e-~~~~La~~~~r 196 (233)
T PRK08727 134 RQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEA-AIDWLLTHGER 196 (233)
T ss_pred CCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC
Confidence 65 444 4689988 75 468999999999999999987754 444333 36778888764
No 81
>PRK06893 DNA replication initiation factor; Validated
Probab=99.63 E-value=6.6e-15 Score=138.62 Aligned_cols=180 Identities=14% Similarity=0.237 Sum_probs=113.8
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
+...++.+|++.+|.+... .+..+... +.. .....++||||||||||||++++|+++ +....++..
T Consensus 7 ~~~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL-LLDSLRKN-------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH-HHHHHHHH-------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 4456778899965444321 12222111 111 122358999999999999999999975 344445544
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
..... ....++... ....+|+|||++.+.+ +...+..+..+++.+. ..++.++|.|+|
T Consensus 76 ~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~---~~~~~illits~ 133 (229)
T PRK06893 76 SKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIK---EQGKTLLLISAD 133 (229)
T ss_pred HHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHH---HcCCcEEEEeCC
Confidence 32111 111222222 3457999999999853 3456677888888764 234444455554
Q ss_pred -CCCCCC---ccccCcCcccEEEEccCCCHHHHHHHHHHHHhc--CCCCCCccHHHHHhhCCC
Q 014712 316 -RPDTLD---PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLSRLCPN 372 (420)
Q Consensus 316 -~~~~ld---~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~--~~~~~~v~l~~la~~t~g 372 (420)
.|..++ +.+.++.+++..+.++.|+.++|.+|++..+.. +.+++++ ...|++.++|
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~ 195 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR 195 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC
Confidence 455554 889885556679999999999999999988754 4444443 6788888776
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=5e-15 Score=154.61 Aligned_cols=182 Identities=13% Similarity=0.199 Sum_probs=132.7
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-------- 228 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~-------- 228 (420)
.|.++++|.+|++++|++.+++.+..++.. -..+.++||+||+|+|||++|+++|+.+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~ 72 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC 72 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 467889999999999999999999998864 134567999999999999999999998743
Q ss_pred ----------------cEEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 229 ----------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 229 ----------------~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
.++.+++.. ..+-..++.+...+.. ....|++|||+|.+ +...
T Consensus 73 Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~A 135 (605)
T PRK05896 73 CNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STSA 135 (605)
T ss_pred CcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHHH
Confidence 122222211 0122335555554432 23459999999998 3445
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
+..|+..+++ +...+++|++|+.+..+.+++++ |+ ..++|+.|+..+....++..+.+.+.. ++-.+..++
T Consensus 136 ~NaLLKtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 136 WNALLKTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHHHHHHHh-----CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666664 35678888899889999999998 87 579999999999999998888665532 223466777
Q ss_pred hhCCCCcc
Q 014712 368 RLCPNSTG 375 (420)
Q Consensus 368 ~~t~g~sg 375 (420)
.++.|-.+
T Consensus 208 ~lS~GdlR 215 (605)
T PRK05896 208 DLADGSLR 215 (605)
T ss_pred HHcCCcHH
Confidence 78777443
No 83
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9.2e-15 Score=151.86 Aligned_cols=179 Identities=18% Similarity=0.282 Sum_probs=128.3
Q ss_pred ccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc----------
Q 014712 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 229 (420)
Q Consensus 160 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~---------- 229 (420)
.++++.+|++|+|++.+++.|+.++... ..+..+|||||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 5788999999999999999999998751 234567999999999999999999987531
Q ss_pred -------------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHHHH
Q 014712 230 -------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292 (420)
Q Consensus 230 -------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l 292 (420)
++.++++. ..+...++.+...+. ...+.||+|||+|.+ +...+..+
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHH
Confidence 33333321 112233455433332 245679999999987 33344444
Q ss_pred HHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCC
Q 014712 293 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCP 371 (420)
Q Consensus 293 ~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~ 371 (420)
+..++. +..++++|++|+.+..+.+.+.+ |+ ..+.|..|+.++....++..+.+.++. ++-.+..|+..+.
T Consensus 137 ---Lk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 137 ---LKTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred ---HHHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 444432 24567888889999999999988 77 589999999999999999988776654 2234677777777
Q ss_pred CCcc
Q 014712 372 NSTG 375 (420)
Q Consensus 372 g~sg 375 (420)
|-.+
T Consensus 209 GdlR 212 (504)
T PRK14963 209 GAMR 212 (504)
T ss_pred CCHH
Confidence 6443
No 84
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=6.1e-15 Score=160.44 Aligned_cols=178 Identities=20% Similarity=0.223 Sum_probs=130.2
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
+..++++.+|++|+|++.+++.|+.++..- +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 457899999999999999999999998751 234468999999999999999999988642
Q ss_pred ------------------EEEEecchhhhhhhhhhHHHHHHHHHH----HHhCCCcEEEecCcccccCCccCCCCCCCHH
Q 014712 230 ------------------FIRVIGSELVQKYVGEGARMVRELFQM----ARSKKACIVFFDEVDAIGGARFDDGVGGDNE 287 (420)
Q Consensus 230 ------------------~i~v~~~~l~~~~~g~~~~~v~~~f~~----a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 287 (420)
++.+++... .+-..+|.+... .......|+||||+|.| +..
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~ 135 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQ 135 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHH
Confidence 222222110 012233333222 23355679999999998 566
Q ss_pred HHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHH
Q 014712 288 VQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELL 366 (420)
Q Consensus 288 ~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~l 366 (420)
.++.|+.+|++ ...++++|++|+.++.|.+.|++ |+ ..+.|..++.++...+|+..+++.++. .+..+..|
T Consensus 136 a~NaLLK~LEE-----pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lL 207 (824)
T PRK07764 136 GFNALLKIVEE-----PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLV 207 (824)
T ss_pred HHHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 77777777765 35678889899988889899998 87 789999999999999998888766654 22235566
Q ss_pred HhhCCC
Q 014712 367 SRLCPN 372 (420)
Q Consensus 367 a~~t~g 372 (420)
++.+.|
T Consensus 208 a~~sgG 213 (824)
T PRK07764 208 IRAGGG 213 (824)
T ss_pred HHHcCC
Confidence 666665
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9.3e-15 Score=152.33 Aligned_cols=178 Identities=16% Similarity=0.250 Sum_probs=129.6
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC---------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--------- 228 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--------- 228 (420)
+.+++++.+|++++|++.+++.|..++... ..+..+||+||+|+|||++|+++|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC 73 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 456788999999999999999999988751 23456899999999999999999997754
Q ss_pred ---------------cEEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 229 ---------------CFIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 229 ---------------~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
.++.+++..- .+...++.+...+. .+...|+||||+|.+ +...+
T Consensus 74 g~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~ 136 (546)
T PRK14957 74 NKCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSF 136 (546)
T ss_pred cccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHH
Confidence 2222322110 11223344443332 245569999999998 45567
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.|+..+++ +.+.+.+|++|+.+..+.+.+++ |+ ..++|..++.++-...++..+++.++. ++..+..++.
T Consensus 137 naLLK~LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 137 NALLKTLEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHHhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777664 35677788888888888888888 88 889999999999888888888766654 2334667777
Q ss_pred hCCC
Q 014712 369 LCPN 372 (420)
Q Consensus 369 ~t~g 372 (420)
.+.|
T Consensus 209 ~s~G 212 (546)
T PRK14957 209 HAKG 212 (546)
T ss_pred HcCC
Confidence 7776
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=7.2e-15 Score=151.15 Aligned_cols=179 Identities=16% Similarity=0.245 Sum_probs=132.7
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC----------
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---------- 228 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~---------- 228 (420)
..++++.+|++++|++..++.|+.++.. -..+.++||+||+|+|||++|+.+|+.+.+
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 3568889999999999999999988865 134668999999999999999999986532
Q ss_pred --------------cEEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHH
Q 014712 229 --------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (420)
Q Consensus 229 --------------~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (420)
.++.+++++- .+-..++.+...+.. ....|++|||+|.+ +.+.++
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~N 134 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFN 134 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHH
Confidence 2344444321 233456666665532 34569999999998 344555
Q ss_pred HHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhh
Q 014712 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRL 369 (420)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~ 369 (420)
.|+..+++ +...+.+|++|+.++.+.+.+++ |+ ..+.|..++.++....++..+.+.+.. ++..+..|++.
T Consensus 135 aLLK~LEe-----Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~ 206 (491)
T PRK14964 135 ALLKTLEE-----PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN 206 (491)
T ss_pred HHHHHHhC-----CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555543 35678888899888889999998 87 779999999999999999888776654 33346778888
Q ss_pred CCCCc
Q 014712 370 CPNST 374 (420)
Q Consensus 370 t~g~s 374 (420)
+.|-.
T Consensus 207 s~Gsl 211 (491)
T PRK14964 207 SSGSM 211 (491)
T ss_pred cCCCH
Confidence 87633
No 87
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.61 E-value=9.3e-15 Score=143.74 Aligned_cols=179 Identities=21% Similarity=0.303 Sum_probs=126.1
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC-----CcE
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 230 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~ 230 (420)
.+|.+++.|.+|+++.|.+++++.++.++... ...+++||||||||||++++++++++. ..+
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~ 71 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENF 71 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccce
Confidence 46999999999999999999999999998641 123589999999999999999999863 334
Q ss_pred EEEecchhhhhhhhhhHHHHHHHHH-HHHh-----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 231 IRVIGSELVQKYVGEGARMVRELFQ-MARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~~f~-~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
+.+++++... ...++..+. .+.. ..+.+|+|||+|.+ ....+..+..+++..
T Consensus 72 i~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~----- 129 (319)
T PRK00440 72 LELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMY----- 129 (319)
T ss_pred EEeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcC-----
Confidence 5554433211 111222221 1211 23469999999988 344455666665432
Q ss_pred CCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 305 ~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
..++.+|+++|.+..+.+++.+ |+ ..++|++|+.++...+++.++++.++. .+..+..++..+.|
T Consensus 130 ~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 130 SQNTRFILSCNYSSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred CCCCeEEEEeCCccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3346678888888777778887 77 468999999999999999998776653 23346777777655
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=6e-15 Score=155.56 Aligned_cols=181 Identities=18% Similarity=0.252 Sum_probs=133.2
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcE-------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF------- 230 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~------- 230 (420)
..+++++.+|++|+|++.+++.|+.++... +.+..+||+||+|||||++|+++|+.+++.-
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC 73 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC 73 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC
Confidence 356789999999999999999999998751 3456799999999999999999999875431
Q ss_pred -----------------EEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 231 -----------------IRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 231 -----------------i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
+.++.. .+.+...+++++..+. .....||||||+|.+ +...+
T Consensus 74 g~C~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~ 136 (709)
T PRK08691 74 GVCQSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAF 136 (709)
T ss_pred cccHHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHH
Confidence 112111 1123345666665542 234569999999987 34455
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.|+..|++ ..+.+.+|++|+.+..+.+.+++ |+ ..+.|+.++.++-...++..+.+.++. ++..+..|++
T Consensus 137 NALLKtLEE-----Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~ 208 (709)
T PRK08691 137 NAMLKTLEE-----PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGR 208 (709)
T ss_pred HHHHHHHHh-----CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 566666553 35678899999999999999887 88 778888999999999999988876654 2234677888
Q ss_pred hCCCCcc
Q 014712 369 LCPNSTG 375 (420)
Q Consensus 369 ~t~g~sg 375 (420)
.+.|-..
T Consensus 209 ~A~GslR 215 (709)
T PRK08691 209 AAAGSMR 215 (709)
T ss_pred HhCCCHH
Confidence 7776443
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=6e-15 Score=155.58 Aligned_cols=181 Identities=17% Similarity=0.254 Sum_probs=132.0
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
+.+++++.+|++|+|++..++.|+.++..- ..+..+|||||+|||||++|+++|+.+.+.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 567889999999999999999999998751 234568999999999999999999987642
Q ss_pred ---------------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCC
Q 014712 230 ---------------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGG 284 (420)
Q Consensus 230 ---------------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~ 284 (420)
++.+++.. ..+-..++++...+.. +...|++|||+|.+
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------- 136 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------- 136 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------
Confidence 12222111 1123346666655432 33569999999998
Q ss_pred CHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccH
Q 014712 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRF 363 (420)
Q Consensus 285 ~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l 363 (420)
+...++.|+..+++ +...+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+.+.++. ++..+
T Consensus 137 s~~a~NaLLKtLEE-----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL 208 (618)
T PRK14951 137 TNTAFNAMLKTLEE-----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQAL 208 (618)
T ss_pred CHHHHHHHHHhccc-----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 44455555554443 35678888888888888888888 87 889999999999999999888766654 22346
Q ss_pred HHHHhhCCCCcc
Q 014712 364 ELLSRLCPNSTG 375 (420)
Q Consensus 364 ~~la~~t~g~sg 375 (420)
..|++.+.|-.+
T Consensus 209 ~~La~~s~GslR 220 (618)
T PRK14951 209 RLLARAARGSMR 220 (618)
T ss_pred HHHHHHcCCCHH
Confidence 777887776333
No 90
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.61 E-value=2e-14 Score=135.78 Aligned_cols=175 Identities=17% Similarity=0.262 Sum_probs=118.3
Q ss_pred ccCCCCccccc--cccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014712 160 EEKPDVTYNDV--GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (420)
Q Consensus 160 ~~~~~~~~~~i--~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~ 234 (420)
.-.++.+|++. +++..++..++++... ....+++||||+|||||||++++++++ +..+.+++
T Consensus 14 ~~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 14 YLPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred CCCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34556677774 3577777777777643 123479999999999999999999865 34455555
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
....... ..++.+... ...+|+|||++.+.+ +...+..+..+++.+. ..++..+|+||
T Consensus 81 ~~~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~---e~g~~~li~ts 138 (235)
T PRK08084 81 LDKRAWF--------VPEVLEGME--QLSLVCIDNIECIAG---------DELWEMAIFDLYNRIL---ESGRTRLLITG 138 (235)
T ss_pred HHHHhhh--------hHHHHHHhh--hCCEEEEeChhhhcC---------CHHHHHHHHHHHHHHH---HcCCCeEEEeC
Confidence 5442211 111222211 135899999999843 4667778888887753 13444566666
Q ss_pred CCC-CC---CCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhc--CCCCCCccHHHHHhhCCC
Q 014712 315 NRP-DT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLSRLCPN 372 (420)
Q Consensus 315 n~~-~~---ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~--~~~~~~v~l~~la~~t~g 372 (420)
+.+ .. +.|.|++ |+. .++.+.+|+.+++.++++..+.. +.+++++ ++.|++.++|
T Consensus 139 ~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~ 201 (235)
T PRK08084 139 DRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR 201 (235)
T ss_pred CCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC
Confidence 654 33 5789999 764 79999999999999999986654 4444443 7788888877
No 91
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.61 E-value=1.4e-14 Score=147.75 Aligned_cols=184 Identities=23% Similarity=0.402 Sum_probs=120.5
Q ss_pred CCCCcccc-ccccHHH--HHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEE
Q 014712 162 KPDVTYND-VGGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (420)
Q Consensus 162 ~~~~~~~~-i~G~~~~--~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v 233 (420)
.+..+|++ ++|.+.. ...++++...| + ....+++||||+|+|||+|++++++++ +..++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 35668888 5564443 33344443321 1 234579999999999999999999976 5778899
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
++.++...+...........|.... ..+++|+|||++.+.+ ....+..++.+++.+.. .+.. +|+|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~~~~---~~~~-iiit 238 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAG---------KERTQEEFFHTFNALHE---NGKQ-IVLT 238 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHHH---CCCC-EEEe
Confidence 9888766544332111111122211 2367999999999854 23456677777776532 2333 4555
Q ss_pred eCC-CC---CCCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 314 TNR-PD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 314 tn~-~~---~ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
++. |. .+++.+.+ ||. ..+.|++|+.++|..|++..+...++. ++..++.||....+
T Consensus 239 s~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 239 SDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS 302 (405)
T ss_pred cCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 554 43 36688888 775 489999999999999999998765543 33347778877766
No 92
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.61 E-value=4.8e-15 Score=160.16 Aligned_cols=163 Identities=21% Similarity=0.331 Sum_probs=121.4
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCC----CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh-----
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGI----DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ----- 240 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi----~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~----- 240 (420)
|+|++++++.|.+++... ..|+ +|..++||+||||||||++|+++|..++.+++.++++++..
T Consensus 460 ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_pred EeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHH
Confidence 899999999999998752 2233 23346999999999999999999999999999999988743
Q ss_pred hhhhhhHHHH-----HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc------CCCCeE
Q 014712 241 KYVGEGARMV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNIK 309 (420)
Q Consensus 241 ~~~g~~~~~v-----~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v~ 309 (420)
...|....++ ..+....+....+||||||||.+ ++++++.++++++...-.+ .-.+++
T Consensus 532 ~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred HHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 2333221111 12333445566789999999997 6889999999987532111 124788
Q ss_pred EEEEeCCC-------------------------CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHh
Q 014712 310 VLMATNRP-------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 310 vI~ttn~~-------------------------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
+|+|||.- ..+.|+++. |+|.++.|++.+.++..+|+..++.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999932 125577777 9999999999999999999887764
No 93
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.1e-14 Score=154.92 Aligned_cols=188 Identities=18% Similarity=0.293 Sum_probs=134.7
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE---
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV--- 233 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v--- 233 (420)
.|..+++|.+|++|+|++.+++.|+.++... ..+..+|||||+|+|||++|+++|+.+.+.-...
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~ 74 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE 74 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC
Confidence 4677899999999999999999999999751 3455789999999999999999999876531100
Q ss_pred ecchhh---hh----h-----hhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHH
Q 014712 234 IGSELV---QK----Y-----VGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (420)
Q Consensus 234 ~~~~l~---~~----~-----~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (420)
.|.... .. + ...+...++.+...+.. +...|++|||+|.+ +...+..|+..|+
T Consensus 75 pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKtLE 143 (725)
T PRK07133 75 PCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKTLE 143 (725)
T ss_pred chhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHHhh
Confidence 111110 00 0 00123446666665543 45569999999998 3445566655555
Q ss_pred HhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCC-CccHHHHHhhCCCCcc
Q 014712 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLSRLCPNSTG 375 (420)
Q Consensus 298 ~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~-~v~l~~la~~t~g~sg 375 (420)
+ +...+++|++|+.++.|.+.+++ |+ ..+.|.+|+.++....++..+.+.++.- +..+..+|.++.|-.+
T Consensus 144 E-----PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 144 E-----PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred c-----CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 3 35678888899999999999998 88 6899999999999999988876665542 2236778888887444
No 94
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.60 E-value=2e-14 Score=152.54 Aligned_cols=185 Identities=17% Similarity=0.270 Sum_probs=128.0
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CCcEEEEecch
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGSE 237 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~~~~ 237 (420)
+.|.|.++++++|..++...+.. -.++..++|+|+||||||++++.+.+++ ...+++|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56999999999999999764432 1233345799999999999999998765 25678999965
Q ss_pred hhhhh---------h-------h-hhHHHHHHHHHHHH--hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHH
Q 014712 238 LVQKY---------V-------G-EGARMVRELFQMAR--SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (420)
Q Consensus 238 l~~~~---------~-------g-~~~~~v~~~f~~a~--~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (420)
+...+ + | .....+..+|.... .....||+|||||.|... .+..|+.|++.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~ 895 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDW 895 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHH
Confidence 43221 0 0 12234556666542 234569999999999542 35677888876
Q ss_pred hcCCcCCCCeEEEEEeCC---CCCCCccccCcCcccE-EEEccCCCHHHHHHHHHHHHhcCC-CCCCccHHHHHhhCCCC
Q 014712 299 LDGFDARGNIKVLMATNR---PDTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRTMN-CERDIRFELLSRLCPNS 373 (420)
Q Consensus 299 l~~~~~~~~v~vI~ttn~---~~~ld~al~r~gRfd~-~i~~~~Pd~~~R~~Il~~~~~~~~-~~~~v~l~~la~~t~g~ 373 (420)
.. .....+.||+++|. ++.|++.+.+ ||.. .+.|++++.++..+||+..+.... +-.+..++.+|+++...
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~ 971 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV 971 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Confidence 44 23467899999986 4567788887 5543 588999999999999999987532 22233366777766554
Q ss_pred cc
Q 014712 374 TG 375 (420)
Q Consensus 374 sg 375 (420)
+|
T Consensus 972 SG 973 (1164)
T PTZ00112 972 SG 973 (1164)
T ss_pred CC
Confidence 44
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.1e-14 Score=152.83 Aligned_cols=182 Identities=15% Similarity=0.211 Sum_probs=130.1
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~------- 229 (420)
.+.+++++.+|++|+|++.+++.|+.++..- +-+..+||+||+|||||++|+++|+.+.+.
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~p 72 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEP 72 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCC
Confidence 3577889999999999999999999988751 224579999999999999999999988652
Q ss_pred -----------------EEEEecchhhhhhhhhhHHHHHHHHHH----HHhCCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQM----ARSKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~----a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
++.+++..- .+-..++.+... .......||||||+|.+ +.+.
T Consensus 73 Cg~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a 135 (624)
T PRK14959 73 CNTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREA 135 (624)
T ss_pred CcccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHH
Confidence 333433211 011222332222 22345569999999998 4455
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
++.|+..+++ ...++++|++|+.+..+.+.+++ |+ ..+.|+.++.++...+|+..+.+.++. ++..++.|+
T Consensus 136 ~naLLk~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA 207 (624)
T PRK14959 136 FNALLKTLEE-----PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIA 207 (624)
T ss_pred HHHHHHHhhc-----cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5666555553 34578899999998888888888 87 578999999999999998888665542 233467778
Q ss_pred hhCCCCcc
Q 014712 368 RLCPNSTG 375 (420)
Q Consensus 368 ~~t~g~sg 375 (420)
..+.|-.+
T Consensus 208 ~~s~GdlR 215 (624)
T PRK14959 208 RRAAGSVR 215 (624)
T ss_pred HHcCCCHH
Confidence 77776443
No 96
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.5e-14 Score=152.11 Aligned_cols=178 Identities=20% Similarity=0.267 Sum_probs=129.5
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---------
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~--------- 229 (420)
-+++++.+|++|+|++.+++.|+.++... ..+..+||+||+|||||++|+++|+.+.+.
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 36789999999999999999999998751 234568999999999999999999987542
Q ss_pred -----------------EEEEecchhhhhhhhhhHHHHHHHHHHH----HhCCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
++.+++... .+-..++.+...+ ......|++|||+|.+ +...
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A 134 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAG 134 (584)
T ss_pred ccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHH
Confidence 222222111 1223344443333 2244569999999998 4556
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
++.|+..|++ +..++++|++|+.++.+.+.+++ |+ ..+.|..++.++..+.+..++.+.+.. ++..+..++
T Consensus 135 ~NALLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia 206 (584)
T PRK14952 135 FNALLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVI 206 (584)
T ss_pred HHHHHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666654 35688899999999999999998 76 789999999999888998888776643 223456677
Q ss_pred hhCCCC
Q 014712 368 RLCPNS 373 (420)
Q Consensus 368 ~~t~g~ 373 (420)
+.+.|-
T Consensus 207 ~~s~Gd 212 (584)
T PRK14952 207 RAGGGS 212 (584)
T ss_pred HHcCCC
Confidence 777663
No 97
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=1.2e-14 Score=145.35 Aligned_cols=179 Identities=21% Similarity=0.338 Sum_probs=128.2
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~------- 229 (420)
.|.+++++.+|++++|++.+++.+++++.. -..+..+|||||||+|||++|+++|+.+.+.
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 70 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP 70 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 467888999999999999999999998865 1345678999999999999999999986432
Q ss_pred -----------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
++.+++.. ..+...++.++..+.. ....|++|||+|.+ +...
T Consensus 71 c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~~~ 133 (355)
T TIGR02397 71 CNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SKSA 133 (355)
T ss_pred CCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CHHH
Confidence 23333221 1123345666665543 33459999999988 2333
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
+..++ ..++. +..++++|++|+.++.+.+++++ |+ ..++|++|+..+...+++.++++.++. ++..+..++
T Consensus 134 ~~~Ll---~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~ 205 (355)
T TIGR02397 134 FNALL---KTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIA 205 (355)
T ss_pred HHHHH---HHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44444 44432 34577888888988888889988 77 678999999999999999988766543 223355667
Q ss_pred hhCCC
Q 014712 368 RLCPN 372 (420)
Q Consensus 368 ~~t~g 372 (420)
..+.|
T Consensus 206 ~~~~g 210 (355)
T TIGR02397 206 RAADG 210 (355)
T ss_pred HHcCC
Confidence 76665
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.59 E-value=1.6e-14 Score=149.13 Aligned_cols=183 Identities=23% Similarity=0.407 Sum_probs=122.7
Q ss_pred CCCCcccc-ccccHH--HHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEE
Q 014712 162 KPDVTYND-VGGCKE--QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (420)
Q Consensus 162 ~~~~~~~~-i~G~~~--~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v 233 (420)
.+..+|++ ++|... +...++++...| + ....+++||||||||||||++++++++ +..++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 46668888 445433 455555555432 1 233569999999999999999999986 5678899
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
++.++...+...........|... ...+++|+|||++.+.+ ....+..++.+++.+.. .+.. +|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~l~~---~~~~-iiit 250 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAG---------KERTQEEFFHTFNALHE---AGKQ-IVLT 250 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHHH---CCCc-EEEE
Confidence 998887665444322111223222 22577999999999854 33456677777776542 2333 4445
Q ss_pred eCC-CCC---CCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhcCC--CCCCccHHHHHhhCCC
Q 014712 314 TNR-PDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMN--CERDIRFELLSRLCPN 372 (420)
Q Consensus 314 tn~-~~~---ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~~~--~~~~v~l~~la~~t~g 372 (420)
++. |.. +++.+.+ ||. ..+.|.+|+.+.|..|++..+...+ ++++ .++.||..+.|
T Consensus 251 s~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e-~l~~ia~~~~~ 314 (450)
T PRK00149 251 SDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDE-VLEFIAKNITS 314 (450)
T ss_pred CCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHcCcCC
Confidence 554 443 6788888 885 5899999999999999999987544 3333 36777777665
No 99
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=1.3e-14 Score=156.23 Aligned_cols=156 Identities=28% Similarity=0.349 Sum_probs=113.9
Q ss_pred cccccCCCCccccccccHHHHH---HHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIE---KMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~---~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.+.+..++.+|++++|++..+. .++.++.. ....+++||||||||||++|+++|+..+..|+.+
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l 83 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence 3566778899999999999885 56666653 2334799999999999999999999999999888
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHH-----HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCe
Q 014712 234 IGSELVQKYVGEGARMVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~~f~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (420)
++.... .+.++..+..+ ......+|||||+|.+ +...+..|+..++ .+.+
T Consensus 84 na~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE-------~g~I 138 (725)
T PRK13341 84 NAVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVE-------NGTI 138 (725)
T ss_pred hhhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhc-------CceE
Confidence 875321 11223333322 1234569999999998 4555666665443 3557
Q ss_pred EEEEEeCC--CCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHh
Q 014712 309 KVLMATNR--PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 309 ~vI~ttn~--~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
++|++|+. ...+++++++ |+ ..+.|++++.+++..+++..+.
T Consensus 139 iLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 139 TLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred EEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 77776643 3568899998 65 5789999999999999998886
No 100
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=9.5e-15 Score=152.91 Aligned_cols=181 Identities=19% Similarity=0.258 Sum_probs=131.2
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
..+++++.+|++|+|++.+++.|..++... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pc 73 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPC 73 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 346778899999999999999999998751 234568999999999999999999988652
Q ss_pred ----------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
++.+++.. ..+...++.+...+.. +...|+||||+|.+ +...+
T Consensus 74 g~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~ 136 (527)
T PRK14969 74 GVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAF 136 (527)
T ss_pred CCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHH
Confidence 12222110 1223445666665532 34469999999998 34455
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.|+..+++ +...+.+|++|+.++.+.+.+++ |+ ..+.|..++.++-...+...+.+.++. ++..+..|++
T Consensus 137 naLLK~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~ 208 (527)
T PRK14969 137 NAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLAR 208 (527)
T ss_pred HHHHHHHhC-----CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555553 35678889889888888888888 77 789999999999888888887665554 2234677788
Q ss_pred hCCCCcc
Q 014712 369 LCPNSTG 375 (420)
Q Consensus 369 ~t~g~sg 375 (420)
.+.|-.+
T Consensus 209 ~s~Gslr 215 (527)
T PRK14969 209 AAAGSMR 215 (527)
T ss_pred HcCCCHH
Confidence 8877444
No 101
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.9e-14 Score=151.59 Aligned_cols=177 Identities=19% Similarity=0.317 Sum_probs=130.3
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---------
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~--------- 229 (420)
-.++++.+|++++|++..++.|+.++.. -..+..+|||||+|||||++|+.+|+.+.+.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3568899999999999999999999875 1345678999999999999999999986532
Q ss_pred ---------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHH
Q 014712 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (420)
Q Consensus 230 ---------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (420)
++.+++.. +.+...++.+...+.. ....|++|||+|.+ +...++
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~n 137 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFN 137 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHH
Confidence 23333211 1234456666665542 34569999999998 344455
Q ss_pred HHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhh
Q 014712 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRL 369 (420)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~ 369 (420)
.|+..+++ +...+++|++|+.++.+.+.+++ |+ ..+.|..|+..+....++..+++.++. ++..+..++..
T Consensus 138 aLLKtLEe-----pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~ 209 (559)
T PRK05563 138 ALLKTLEE-----PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA 209 (559)
T ss_pred HHHHHhcC-----CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55444432 35677888888889999999998 88 578999999999999999888776654 22346677877
Q ss_pred CCC
Q 014712 370 CPN 372 (420)
Q Consensus 370 t~g 372 (420)
+.|
T Consensus 210 s~G 212 (559)
T PRK05563 210 AEG 212 (559)
T ss_pred cCC
Confidence 776
No 102
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.59 E-value=4.6e-15 Score=142.94 Aligned_cols=205 Identities=25% Similarity=0.347 Sum_probs=137.9
Q ss_pred cccCCCCccccccccHHHHHH---HHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---EEE
Q 014712 159 VEEKPDVTYNDVGGCKEQIEK---MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIR 232 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~---l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~---~i~ 232 (420)
.+.-++.+++|.+|++....+ |+.+|+. ..-.+++||||||||||+||+.++.....+ |+.
T Consensus 129 aermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfve 195 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVE 195 (554)
T ss_pred hhhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEE
Confidence 455677788888888877654 3444433 233479999999999999999999977655 665
Q ss_pred EecchhhhhhhhhhHHHHHHHHHHHHh-----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCC
Q 014712 233 VIGSELVQKYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (420)
Q Consensus 233 v~~~~l~~~~~g~~~~~v~~~f~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (420)
+++.. ...+-+|.+|+.+.. +...|||||||+++ +...|.+++-.++ .+.
T Consensus 196 lSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~VE-------~G~ 250 (554)
T KOG2028|consen 196 LSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHVE-------NGD 250 (554)
T ss_pred Eeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhcccceec-------cCc
Confidence 55432 344567888888754 45679999999998 3445666665543 677
Q ss_pred eEEEEEe--CCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcC--------CCCC------CccHHHHHhhCC
Q 014712 308 IKVLMAT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM--------NCER------DIRFELLSRLCP 371 (420)
Q Consensus 308 v~vI~tt--n~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~--------~~~~------~v~l~~la~~t~ 371 (420)
+.+|++| |..-.|..+|++ |+ +++.+.....+.-..||.+....+ ++.. +--++.++.+++
T Consensus 251 I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd 327 (554)
T KOG2028|consen 251 ITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD 327 (554)
T ss_pred eEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcC
Confidence 8888866 334678899999 87 778888888888888888754321 1111 122678899999
Q ss_pred CCcccccc-------------ccccccccChhhHHHHHHHHHhhcc
Q 014712 372 NSTGKHSP-------------FRSCFMVNPHDDYCKMLYVYRSYIN 404 (420)
Q Consensus 372 g~sgadl~-------------~~~~~~~~~~~d~~~~~~~~~~~~~ 404 (420)
|-..+.|- ....+......|...++...-.+.+
T Consensus 328 GDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YD 373 (554)
T KOG2028|consen 328 GDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYD 373 (554)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceec
Confidence 86665544 1223445555566655544333333
No 103
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3e-14 Score=146.54 Aligned_cols=178 Identities=17% Similarity=0.271 Sum_probs=127.2
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
..+++++.+|++|+|++..+..|+.++..- ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP 74 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC
Confidence 456788999999999999999999998751 245679999999999999999999976432
Q ss_pred -----------------EEEEecchhhhhhhhhhHHHHHHHHHHH----HhCCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
++.+++.... +-..++.+.... ......|++|||+|.+ +.+.
T Consensus 75 c~~c~~C~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t~~~ 137 (451)
T PRK06305 75 CNQCASCKEISSGTSLDVLEIDGASHR------GIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------TKEA 137 (451)
T ss_pred CcccHHHHHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------CHHH
Confidence 3333322110 112233322222 2345679999999998 3445
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
++.|+..++. +.+.+.+|++|+.+..+.+++++ |+ ..++|..++.++....++..+++.+.. +...++.|+
T Consensus 138 ~n~LLk~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 138 FNSLLKTLEE-----PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HHHHHHHhhc-----CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555553 34577888888888889999998 87 679999999999888888887765543 233466777
Q ss_pred hhCCC
Q 014712 368 RLCPN 372 (420)
Q Consensus 368 ~~t~g 372 (420)
..+.|
T Consensus 210 ~~s~g 214 (451)
T PRK06305 210 RAAQG 214 (451)
T ss_pred HHcCC
Confidence 77766
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.9e-14 Score=143.53 Aligned_cols=184 Identities=18% Similarity=0.246 Sum_probs=126.8
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec-
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG- 235 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~- 235 (420)
.+.++++|.+|++++|++..++.++..+... ..+.++|||||||+|||++|+++|+.+.+......+
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 73 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNE 73 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3567899999999999999999999999751 345689999999999999999999987542111000
Q ss_pred ------chhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC
Q 014712 236 ------SELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (420)
Q Consensus 236 ------~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (420)
.++ ......+...++.++..+.. ..+.||+|||+|.+ +...+..++.. ++. +.
T Consensus 74 ~~~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-----------~~~~~~~ll~~---le~--~~ 136 (367)
T PRK14970 74 DFSFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-----------SSAAFNAFLKT---LEE--PP 136 (367)
T ss_pred CCCcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc-----------CHHHHHHHHHH---HhC--CC
Confidence 001 00111223456666665432 34569999999987 23334444443 332 24
Q ss_pred CCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 306 ~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
...++|++|+.+..+.+++.+ |+ ..++|+.|+.++...++...+.+.++. ++..+..++..+.|
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred CceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 456777788888888899988 66 578999999999999998888766653 23346667766554
No 105
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.5e-14 Score=152.96 Aligned_cols=180 Identities=19% Similarity=0.318 Sum_probs=132.8
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---------
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~--------- 229 (420)
.+++++.+|++|+|++.+++.|+.++.. | ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 4678899999999999999999999875 1 345678999999999999999999987542
Q ss_pred ---------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHH
Q 014712 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (420)
Q Consensus 230 ---------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (420)
++.+++.. ..+-..++.+...+.. ....|++|||+|.+ +...++
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~n 137 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFN 137 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHH
Confidence 23333221 1122345555554432 33469999999998 455566
Q ss_pred HHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhh
Q 014712 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRL 369 (420)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~ 369 (420)
.|+..|++ +..++++|++|+.++.|.+.+++ |+ ..+.|..++..+-...+...+++.++. ++-.+..+++.
T Consensus 138 aLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~ 209 (576)
T PRK14965 138 ALLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK 209 (576)
T ss_pred HHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 67666664 45678899999999999999998 77 688999999998888888877666554 23346777888
Q ss_pred CCCCcc
Q 014712 370 CPNSTG 375 (420)
Q Consensus 370 t~g~sg 375 (420)
+.|-.+
T Consensus 210 a~G~lr 215 (576)
T PRK14965 210 GDGSMR 215 (576)
T ss_pred cCCCHH
Confidence 877443
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=3.5e-14 Score=148.44 Aligned_cols=183 Identities=20% Similarity=0.359 Sum_probs=125.5
Q ss_pred CCCCccccc-cccHHH--HHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEE
Q 014712 162 KPDVTYNDV-GGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (420)
Q Consensus 162 ~~~~~~~~i-~G~~~~--~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v 233 (420)
.+..+|+++ +|.... ...++.++..+ + ...+.++|||++|||||||++++++++ +..++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~----------~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi 350 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAP----------A-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV 350 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCc----------c-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 456788884 454443 33444444321 1 122359999999999999999999975 5688999
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
++.++...+...........|.. +...+++|+||||+.+.+ ....+..++++++.+. ..+..||+|
T Consensus 351 taeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~g---------ke~tqeeLF~l~N~l~----e~gk~IIIT 416 (617)
T PRK14086 351 SSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLED---------KESTQEEFFHTFNTLH----NANKQIVLS 416 (617)
T ss_pred eHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccC---------CHHHHHHHHHHHHHHH----hcCCCEEEe
Confidence 99888877654433222223443 234568999999999854 3556778888888765 223346667
Q ss_pred eCCC----CCCCccccCcCcc--cEEEEccCCCHHHHHHHHHHHHhcCCCC--CCccHHHHHhhCCC
Q 014712 314 TNRP----DTLDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE--RDIRFELLSRLCPN 372 (420)
Q Consensus 314 tn~~----~~ld~al~r~gRf--d~~i~~~~Pd~~~R~~Il~~~~~~~~~~--~~v~l~~la~~t~g 372 (420)
+|.+ ..+++.|.+ || ...+.+..||.+.|..||+..+...++. .++ ++.|+....+
T Consensus 417 Sd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r 480 (617)
T PRK14086 417 SDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR 480 (617)
T ss_pred cCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC
Confidence 7764 357888998 66 5588999999999999999998655443 333 6777777664
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.4e-14 Score=147.18 Aligned_cols=180 Identities=19% Similarity=0.289 Sum_probs=128.1
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~------- 229 (420)
.|..++++.+|++++|++..++.|+.++.. -..+..+|||||+|+|||++|+.+|..+.+.
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~p 72 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEP 72 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCC
Confidence 356788999999999999999999999975 1234568899999999999999999987531
Q ss_pred -----------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
++.++++ ...+-..++.+...+.. ..+.|++|||+|.+ +...
T Consensus 73 c~~c~nc~~i~~g~~~d~~eidaa------s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a 135 (486)
T PRK14953 73 CGKCENCVEIDKGSFPDLIEIDAA------SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEA 135 (486)
T ss_pred CCccHHHHHHhcCCCCcEEEEeCc------cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHH
Confidence 1111111 01122334555444432 44569999999988 3444
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCC-CccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~-~v~l~~la 367 (420)
++.++..+.. +...+++|++|+.++.+.+++.+ |+ ..+.|++|+..+...+++.+++..++.- +..+..|+
T Consensus 136 ~naLLk~LEe-----pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 136 FNALLKTLEE-----PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred HHHHHHHHhc-----CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555543 34567777788888888888888 77 5799999999999999999988766542 23466777
Q ss_pred hhCCCC
Q 014712 368 RLCPNS 373 (420)
Q Consensus 368 ~~t~g~ 373 (420)
..+.|-
T Consensus 208 ~~s~G~ 213 (486)
T PRK14953 208 QASEGG 213 (486)
T ss_pred HHcCCC
Confidence 777763
No 108
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=150.40 Aligned_cols=166 Identities=23% Similarity=0.357 Sum_probs=127.8
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh------h---
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL------V--- 239 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l------~--- 239 (420)
|=-|++++++++.+++.-.... +-..+.-++|+||||+|||+|++.+|+.++..|++++...+ .
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4579999999999988652222 11223457899999999999999999999999999975433 2
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CC--------cCCCCeE
Q 014712 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF--------DARGNIK 309 (420)
Q Consensus 240 ~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~--------~~~~~v~ 309 (420)
..|+|..+..+-.-...|....| +++|||||.++.. ..+++ ..+|++.|+-=+ .| -.-++|+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-----~rGDP--aSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-----FRGDP--ASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-----CCCCh--HHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 34788887777777888888888 8999999999643 22333 345666554211 11 1235799
Q ss_pred EEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 310 vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
+|+|+|..+.++..|+. |+ .+|+++-++..+..+|-+.|+
T Consensus 469 FiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 99999999999999999 99 899999999999999999887
No 109
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=3.9e-14 Score=145.47 Aligned_cols=182 Identities=20% Similarity=0.360 Sum_probs=119.0
Q ss_pred CCCCccccc-cccHHH--HHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEE
Q 014712 162 KPDVTYNDV-GGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (420)
Q Consensus 162 ~~~~~~~~i-~G~~~~--~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v 233 (420)
.+..+|++. +|.... ...+.++...+ | ...+++||||+|+|||||++++++++ +..++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~----------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP----------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 566788884 464433 23333333221 1 13469999999999999999999975 4678888
Q ss_pred ecchhhhhhhhhhH-HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEE
Q 014712 234 IGSELVQKYVGEGA-RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (420)
Q Consensus 234 ~~~~l~~~~~g~~~-~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 312 (420)
++.++...+..... ..+. -|.......+.+|+|||++.+.+ ....+..+..+++.+.. .+.. +|+
T Consensus 167 ~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~---------~~~~q~elf~~~n~l~~---~~k~-iIi 232 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIG---------KTGVQTELFHTFNELHD---SGKQ-IVI 232 (440)
T ss_pred EHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcC---------cHHHHHHHHHHHHHHHH---cCCe-EEE
Confidence 98887666543321 1111 23332334678999999998854 23456667777766542 3333 555
Q ss_pred Ee-CCCCC---CCccccCcCcc--cEEEEccCCCHHHHHHHHHHHHhc--CCCCCCccHHHHHhhCCC
Q 014712 313 AT-NRPDT---LDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLSRLCPN 372 (420)
Q Consensus 313 tt-n~~~~---ld~al~r~gRf--d~~i~~~~Pd~~~R~~Il~~~~~~--~~~~~~v~l~~la~~t~g 372 (420)
+| +.|.. +.+.+.+ || ...+.+++|+.+.|..|++..+.. +.+++++ ++.||....|
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~ 297 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD 297 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc
Confidence 55 55544 4567777 66 458899999999999999999864 4444443 7777877766
No 110
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=6.1e-14 Score=142.19 Aligned_cols=178 Identities=25% Similarity=0.287 Sum_probs=118.4
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhh--cCC-CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhhh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVK--LGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE 245 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~--~gi-~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-~~~g~ 245 (420)
|+|++.+++.+..++..+.+....... -.. .+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999998777543222110000 011 23468999999999999999999999999999999988753 46666
Q ss_pred h-HHHHHHHHHHH----HhCCCcEEEecCcccccCCccCCCC---CCCHHHHHHHHHHHHHhc------C--CcCCCCeE
Q 014712 246 G-ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGV---GGDNEVQRTMLEIVNQLD------G--FDARGNIK 309 (420)
Q Consensus 246 ~-~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~ll~~l~------~--~~~~~~v~ 309 (420)
. +..+..++..+ ....++||||||||.+..++.+++. .+...+|+.|+++|+.-. + ..+..+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 4 33344444322 2346789999999999766332211 122468888888886311 0 11122345
Q ss_pred EEEEeCCCC----------------------------------------------------CCCccccCcCcccEEEEcc
Q 014712 310 VLMATNRPD----------------------------------------------------TLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 310 vI~ttn~~~----------------------------------------------------~ld~al~r~gRfd~~i~~~ 337 (420)
+|+|+|-.. -+.|+++. |+|.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 555555300 02455555 999999999
Q ss_pred CCCHHHHHHHHH
Q 014712 338 LPDLESRTQIFK 349 (420)
Q Consensus 338 ~Pd~~~R~~Il~ 349 (420)
+.+.++..+|+.
T Consensus 311 ~L~~~~L~~Il~ 322 (412)
T PRK05342 311 ELDEEALVRILT 322 (412)
T ss_pred CCCHHHHHHHHH
Confidence 999999999987
No 111
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.56 E-value=2.4e-14 Score=155.91 Aligned_cols=165 Identities=22% Similarity=0.359 Sum_probs=123.0
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCC---CC-cceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh---
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---PK-GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--- 241 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~---~~-~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~--- 241 (420)
.|+|++++++.+...+.. .+.|+.. |. .+||+||||||||++|+++|..++.+++.++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 478999999998888765 2344432 33 48999999999999999999999999999999987542
Q ss_pred --hhhhhHH-----HHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc------CCCCe
Q 014712 242 --YVGEGAR-----MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNI 308 (420)
Q Consensus 242 --~~g~~~~-----~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v 308 (420)
.+|.... ..+.+....+....+||+|||+|.+ ++++++.|+++++...-.+ .-.++
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 2222211 1223444556677789999999987 6889999999987532111 12467
Q ss_pred EEEEEeCCCC-------------------------CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 309 KVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 309 ~vI~ttn~~~-------------------------~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
++|+|||.-. .+.|.++. |+|.++.|.+.+.++..+|++..+..
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 8999998631 24667776 99999999999999999999888753
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.56 E-value=1.1e-13 Score=130.04 Aligned_cols=171 Identities=18% Similarity=0.216 Sum_probs=114.8
Q ss_pred ccCCCCccccc--cccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014712 160 EEKPDVTYNDV--GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (420)
Q Consensus 160 ~~~~~~~~~~i--~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~ 234 (420)
...++.+|+++ ++...++..++++... .....+++|+||+|||||+||+++++++ +..+++++
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34556778884 3566777777776652 2345689999999999999999999865 66888888
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
+.++... +. ......+|+|||+|.+ +...+..+..+++... ..+..++|+++
T Consensus 78 ~~~~~~~------------~~--~~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~---~~~~~~vl~~~ 129 (227)
T PRK08903 78 AASPLLA------------FD--FDPEAELYAVDDVERL-----------DDAQQIALFNLFNRVR---AHGQGALLVAG 129 (227)
T ss_pred hHHhHHH------------Hh--hcccCCEEEEeChhhc-----------CchHHHHHHHHHHHHH---HcCCcEEEEeC
Confidence 7765321 11 1234569999999987 2345677777777654 23444455565
Q ss_pred CCCC---CCCccccCcCcc--cEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 315 NRPD---TLDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 315 n~~~---~ld~al~r~gRf--d~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
+.+. .+.+.+.+ || ...+.+++|+.+++..+++.++...++. ++--+..|+...+|
T Consensus 130 ~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g 191 (227)
T PRK08903 130 PAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR 191 (227)
T ss_pred CCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 5432 34566776 66 5799999999999999998877654443 12235566665444
No 113
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.55 E-value=1.1e-13 Score=138.98 Aligned_cols=164 Identities=22% Similarity=0.311 Sum_probs=113.6
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC---------CcEEEEecchh
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIGSEL 238 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~---------~~~i~v~~~~l 238 (420)
+++.|.+++++.|..++...+.. ..+.+++|+||||||||++++++++++. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46899999999999998753322 3456799999999999999999998652 56888888654
Q ss_pred hhh----------hh--hh--------hHHHHHHHHHHHH-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHH
Q 014712 239 VQK----------YV--GE--------GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (420)
Q Consensus 239 ~~~----------~~--g~--------~~~~v~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (420)
... .. +. .......++.... ...+.||+|||+|.+.+. . +..+..++.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~---~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D---DDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C---cHHHHhHhc
Confidence 321 10 10 1223344444433 345779999999999621 1 124445544
Q ss_pred HhcC-CcCCCCeEEEEEeCCCC---CCCccccCcCccc-EEEEccCCCHHHHHHHHHHHHh
Q 014712 298 QLDG-FDARGNIKVLMATNRPD---TLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 298 ~l~~-~~~~~~v~vI~ttn~~~---~ld~al~r~gRfd-~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
..+. .....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++.
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 3211 11235788999999875 47777777 664 6799999999999999999885
No 114
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=3e-14 Score=155.02 Aligned_cols=166 Identities=19% Similarity=0.295 Sum_probs=121.1
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh--------
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-------- 240 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-------- 240 (420)
+..|++++|+++.+++...... +-..+..++|+||||||||++++.+|+.++.+|++++......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4899999999999888742211 1123456999999999999999999999999999887654321
Q ss_pred -hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--C--------cCCCCeE
Q 014712 241 -KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--F--------DARGNIK 309 (420)
Q Consensus 241 -~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~--------~~~~~v~ 309 (420)
.|.|.....+...+..+....| ||+|||+|.+.... .+ ..+.+|+++++.-+. | ...++++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~-----~g--~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM-----RG--DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc-----CC--CHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 3455544444455555444445 89999999996432 11 235677777753110 1 1236899
Q ss_pred EEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHh
Q 014712 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 310 vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
+|+|+|.. .++++|++ || ..|.|..++.++..+|.+.|+.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhh
Confidence 99999987 59999999 99 6899999999999999998883
No 115
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.6e-14 Score=147.71 Aligned_cols=167 Identities=25% Similarity=0.399 Sum_probs=129.9
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh---------
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL--------- 238 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l--------- 238 (420)
+|=-|++++++++.+++.-.... |-..++-+.|+||||+|||++++++|..++..|++++-..+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 35679999999999988653222 23345668899999999999999999999999999875433
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--C--------cCCCCe
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--F--------DARGNI 308 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~--------~~~~~v 308 (420)
...|+|.....+-..++.+....| +++|||||.++.. ..+++ ..+|+++|+-=++ | -.-.+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g-----~qGDP--asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG-----HQGDP--ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC-----CCCCh--HHHHHHhcChhhccchhhhccccccchhhe
Confidence 234788888777788888888888 8999999999731 12333 3566666642111 1 123579
Q ss_pred EEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 309 ~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
.+|+|+|..+.+++.|+. |+ ..|+++=+..++...|.+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999999 98 789999999999999999887
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=99.55 E-value=2.5e-13 Score=128.24 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=100.6
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCcc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 278 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~ 278 (420)
..+++||||+|||||||++++++++ +...++++..++.... ..+.+... ...+|+|||++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~--- 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAG--- 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcC---
Confidence 3678999999999999999999754 5677888887765421 12222222 235899999998843
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC---CCccccCcCcc--cEEEEccCCCHHHHHHHHHHHHh
Q 014712 279 DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT---LDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 279 ~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~---ld~al~r~gRf--d~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
.+..+..+..+++.+. ..+..+||+++..|.. ..+.|++ || ...+.+..|+.++|..+++..+.
T Consensus 112 ------~~~~~~~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 112 ------KADWEEALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred ------ChHHHHHHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 3556777888888753 2344444444444533 4688888 76 46888999999999999996664
Q ss_pred cC--CCCCCccHHHHHhhCCC
Q 014712 354 TM--NCERDIRFELLSRLCPN 372 (420)
Q Consensus 354 ~~--~~~~~v~l~~la~~t~g 372 (420)
.. .++++ -++.|++.+++
T Consensus 181 ~~~~~l~~e-v~~~L~~~~~~ 200 (234)
T PRK05642 181 RRGLHLTDE-VGHFILTRGTR 200 (234)
T ss_pred HcCCCCCHH-HHHHHHHhcCC
Confidence 43 33333 36677777666
No 117
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.55 E-value=9.1e-14 Score=129.91 Aligned_cols=182 Identities=24% Similarity=0.420 Sum_probs=115.3
Q ss_pred CCCccccc-cc--cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEEe
Q 014712 163 PDVTYNDV-GG--CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVI 234 (420)
Q Consensus 163 ~~~~~~~i-~G--~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v~ 234 (420)
|..+|++. .| +..+...++.....+- .....++||||+|+|||||++|+++++ +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~-----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG-----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT-----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC-----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 56688885 34 4444555555544311 123458999999999999999999864 67789999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
+.++...+........-.-|.. ......+|+||+++.+.+ ....+..+..+++.+. ..++. +|+|+
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~-~~~~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~---~~~k~-li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKD-RLRSADLLIIDDIQFLAG---------KQRTQEELFHLFNRLI---ESGKQ-LILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHH-HHCTSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHH---HTTSE-EEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhh-hhhcCCEEEEecchhhcC---------chHHHHHHHHHHHHHH---hhCCe-EEEEe
Confidence 8888776544332211122222 223556999999999953 4567888999988875 23444 55555
Q ss_pred -CCCCC---CCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhcCCCC--CCccHHHHHhhCCC
Q 014712 315 -NRPDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE--RDIRFELLSRLCPN 372 (420)
Q Consensus 315 -n~~~~---ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~~~~~--~~v~l~~la~~t~g 372 (420)
..|.. +++.|.+ ||. ..+.+..|+.+.|..|++..+...++. +++ .+.|+...++
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~ 200 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR 200 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC
Confidence 44544 4677877 654 499999999999999999988665544 333 6677777654
No 118
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=7.5e-14 Score=146.77 Aligned_cols=180 Identities=20% Similarity=0.282 Sum_probs=128.1
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---------
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~--------- 229 (420)
-.+++|.+|++|+|++.+++.|+.++... ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 45688999999999999999999999751 235579999999999999999999987542
Q ss_pred ---------------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHH
Q 014712 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (420)
Q Consensus 230 ---------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (420)
++.+++.. ..+-..++.+...+. .....|++|||+|.+ +...++
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~n 137 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFN 137 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHH
Confidence 22222211 012234444443322 345569999999998 344455
Q ss_pred HHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhh
Q 014712 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRL 369 (420)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~ 369 (420)
.|+..+++ +...+++|++|+.+..+.+++++ |+ ..++|..++.++....++..+...++. ++..+..|++.
T Consensus 138 aLLK~LEe-----pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~ 209 (563)
T PRK06647 138 ALLKTIEE-----PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK 209 (563)
T ss_pred HHHHhhcc-----CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55444442 45678888888888889999998 87 578999999999999998888665544 23346667777
Q ss_pred CCCCcc
Q 014712 370 CPNSTG 375 (420)
Q Consensus 370 t~g~sg 375 (420)
+.|-.+
T Consensus 210 s~GdlR 215 (563)
T PRK06647 210 STGSVR 215 (563)
T ss_pred cCCCHH
Confidence 776433
No 119
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.1e-13 Score=143.64 Aligned_cols=178 Identities=19% Similarity=0.233 Sum_probs=130.2
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC---------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--------- 228 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--------- 228 (420)
+.+++++.+|++++|++.+++.|+.++.. | ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45788999999999999999999999865 1 34556799999999999999999998632
Q ss_pred ---------------cEEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 229 ---------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 229 ---------------~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
.++.+++..- .+-..++.+...+.. ....|++|||+|.+ +.+.+
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~ 134 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAF 134 (535)
T ss_pred cccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHH
Confidence 1222222110 122445555544321 23459999999998 56667
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
+.|+..+++ +...+.+|++|+.+..+.+++++ |+ ..++|.+++.++-...++..+.+.++. ++..+..|+.
T Consensus 135 NALLK~LEE-----pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 135 NALLKTLEE-----PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred HHHHHHHhh-----cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777766664 35667888888888999999999 86 789999999999888888888766553 2334667777
Q ss_pred hCCC
Q 014712 369 LCPN 372 (420)
Q Consensus 369 ~t~g 372 (420)
.+.|
T Consensus 207 ~s~G 210 (535)
T PRK08451 207 SGNG 210 (535)
T ss_pred HcCC
Confidence 7766
No 120
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=1.2e-13 Score=141.66 Aligned_cols=188 Identities=14% Similarity=0.258 Sum_probs=122.2
Q ss_pred CCCCccccc-cccHHH--HHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 162 KPDVTYNDV-GGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 162 ~~~~~~~~i-~G~~~~--~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
.|..+|++. +|.... ...++++...+... +-.+.++++||||+|+|||||++++++++ +..++++++
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~-------~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQG-------KGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccccc-------cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 566788884 354444 34555544322101 01233579999999999999999999975 678888988
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
.++...+.......-...|... ...+++|+|||++.+.+ ....+..+..+++.+.. .+ ..+|+||+
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~---------k~~~qeelf~l~N~l~~---~~-k~IIlts~ 243 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSG---------KGATQEEFFHTFNSLHT---EG-KLIVISST 243 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcC---------ChhhHHHHHHHHHHHHH---CC-CcEEEecC
Confidence 7776554332211111223332 24567999999999853 34557777788776531 23 34666666
Q ss_pred C-C---CCCCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 316 R-P---DTLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 316 ~-~---~~ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
. | ..+++.|.+ ||. ..+.+++|+.++|..|++..+...++. ++.-++.|+....+
T Consensus 244 ~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 244 CAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS 305 (445)
T ss_pred CCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 5 4 356788988 884 799999999999999999998765543 22225556665554
No 121
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.54 E-value=1.5e-13 Score=128.59 Aligned_cols=171 Identities=23% Similarity=0.339 Sum_probs=114.1
Q ss_pred CCCccccc--cccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 014712 163 PDVTYNDV--GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE 237 (420)
Q Consensus 163 ~~~~~~~i--~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~ 237 (420)
.+.+|+++ ++....++.+++++.. ..+.+++|+||+|||||++|+++++.+ +.+++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 34566665 4677888888887642 346789999999999999999999875 56888899887
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC-
Q 014712 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR- 316 (420)
Q Consensus 238 l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~- 316 (420)
+.... ..++... ..+.+|+|||+|.+.. +...+..+..+++.+.. .+. .+|+|++.
T Consensus 77 ~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~---~~~-~iIits~~~ 133 (226)
T TIGR03420 77 LAQAD--------PEVLEGL--EQADLVCLDDVEAIAG---------QPEWQEALFHLYNRVRE---AGG-RLLIAGRAA 133 (226)
T ss_pred HHHhH--------HHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCC-eEEEECCCC
Confidence 75432 1222222 2345999999999832 23446777777766532 222 45666664
Q ss_pred CCCCC---ccccCcCcc--cEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCC
Q 014712 317 PDTLD---PALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCP 371 (420)
Q Consensus 317 ~~~ld---~al~r~gRf--d~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~ 371 (420)
+..++ +.+.+ |+ ...+.+++|+.+++..+++.++.+.++. ++--+..|+..++
T Consensus 134 ~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~ 192 (226)
T TIGR03420 134 PAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS 192 (226)
T ss_pred hHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc
Confidence 33332 66776 55 4789999999999999999887654433 1222455555433
No 122
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.54 E-value=3.6e-14 Score=141.69 Aligned_cols=177 Identities=28% Similarity=0.400 Sum_probs=125.1
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhc-CCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhh-hh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKL-GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EG 246 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~-gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-~~~g-~~ 246 (420)
|+|++++++.+..++........+...+ .-.+|+++||+||||||||++|+++|..++.+|+.++++.+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 8999999999988776532222111111 1224689999999999999999999999999999999987764 5666 45
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 014712 247 ARMVRELFQMA--------------------------------------------------------------------- 257 (420)
Q Consensus 247 ~~~v~~~f~~a--------------------------------------------------------------------- 257 (420)
+..++.+|..|
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 55555555444
Q ss_pred ----------------------------------------------------------------------HhCCCcEEEe
Q 014712 258 ----------------------------------------------------------------------RSKKACIVFF 267 (420)
Q Consensus 258 ----------------------------------------------------------------------~~~~p~Il~i 267 (420)
+.....||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0123459999
Q ss_pred cCcccccCCccCCC-CCCCHHHHHHHHHHHHHhc-----CCcCCCCeEEEEEeC----CCCCCCccccCcCcccEEEEcc
Q 014712 268 DEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQLD-----GFDARGNIKVLMATN----RPDTLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 268 DEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l~-----~~~~~~~v~vI~ttn----~~~~ld~al~r~gRfd~~i~~~ 337 (420)
||||+|+.+..+.+ .-....+|+.|+.+++--. +.-...++.+|++.- .|++|-|.|.- ||..++.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 99999997652222 2233557888777765310 112345788887653 56777788876 999999999
Q ss_pred CCCHHHHHHHH
Q 014712 338 LPDLESRTQIF 348 (420)
Q Consensus 338 ~Pd~~~R~~Il 348 (420)
.++.++-..||
T Consensus 332 ~L~~edL~rIL 342 (441)
T TIGR00390 332 ALTTDDFERIL 342 (441)
T ss_pred CCCHHHHHHHh
Confidence 99999988877
No 123
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.54 E-value=1.8e-13 Score=127.50 Aligned_cols=186 Identities=21% Similarity=0.300 Sum_probs=129.9
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
+....++.++++.|.+.+++.|.+....++.. .|..++||||++|||||+++|++.+++ |..++.+..
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 44566789999999999999999988875544 578899999999999999999999976 667777776
Q ss_pred chhhhhhhhhhHHHHHHHHHHHH-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC-C-cCCCCeEEEE
Q 014712 236 SELVQKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-F-DARGNIKVLM 312 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~-~-~~~~~v~vI~ 312 (420)
.++.. +..++...+ ...+-|||+|++.- . .....-..|..+| +| + ....||+|.+
T Consensus 89 ~~L~~---------l~~l~~~l~~~~~kFIlf~DDLsF--e--------~~d~~yk~LKs~L---eGgle~~P~NvliyA 146 (249)
T PF05673_consen 89 EDLGD---------LPELLDLLRDRPYKFILFCDDLSF--E--------EGDTEYKALKSVL---EGGLEARPDNVLIYA 146 (249)
T ss_pred HHhcc---------HHHHHHHHhcCCCCEEEEecCCCC--C--------CCcHHHHHHHHHh---cCccccCCCcEEEEE
Confidence 55532 334455444 23456999998642 1 2233334454444 33 1 3467899999
Q ss_pred EeCCCCCCCcccc---------------------CcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCC-ccHH----HH
Q 014712 313 ATNRPDTLDPALL---------------------RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-IRFE----LL 366 (420)
Q Consensus 313 ttn~~~~ld~al~---------------------r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~-v~l~----~l 366 (420)
|+|+-+.++.... =..||...+.|..|+.++-.+|++.++...++.-+ ..+. ..
T Consensus 147 TSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~w 226 (249)
T PF05673_consen 147 TSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQW 226 (249)
T ss_pred ecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9997544332111 12399999999999999999999999987776633 2222 22
Q ss_pred HhhCCCCcc
Q 014712 367 SRLCPNSTG 375 (420)
Q Consensus 367 a~~t~g~sg 375 (420)
|..-.|.||
T Consensus 227 a~~rg~RSG 235 (249)
T PF05673_consen 227 ALRRGGRSG 235 (249)
T ss_pred HHHcCCCCH
Confidence 444456666
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.4e-13 Score=146.33 Aligned_cols=181 Identities=18% Similarity=0.256 Sum_probs=130.8
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~------- 229 (420)
.+.+++++.+|++++|++.+++.|+.++... .-+.++|||||+|+|||++|+++|+.+.+.
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~ 72 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP 72 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC
Confidence 3567889999999999999999999998751 124579999999999999999999987652
Q ss_pred -------------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCH
Q 014712 230 -------------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDN 286 (420)
Q Consensus 230 -------------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~ 286 (420)
++.++. ....+...++++...+.. ....|+||||+|.+ +.
T Consensus 73 ~~Cg~C~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~ 135 (620)
T PRK14948 73 EPCGKCELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------ST 135 (620)
T ss_pred CCCcccHHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CH
Confidence 111111 112334566777766543 34469999999998 44
Q ss_pred HHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHH
Q 014712 287 EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFEL 365 (420)
Q Consensus 287 ~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~ 365 (420)
+.++.|+..+++ +...+++|++|+.++.+.+.+++ |+ ..+.|..++.++-...+...+.+.+.. ....+..
T Consensus 136 ~a~naLLK~LEe-----Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~ 207 (620)
T PRK14948 136 AAFNALLKTLEE-----PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTL 207 (620)
T ss_pred HHHHHHHHHHhc-----CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 556666555553 45678888888888888899988 87 778999998888777777777654433 2233667
Q ss_pred HHhhCCCCc
Q 014712 366 LSRLCPNST 374 (420)
Q Consensus 366 la~~t~g~s 374 (420)
++..+.|-.
T Consensus 208 La~~s~G~l 216 (620)
T PRK14948 208 VAQRSQGGL 216 (620)
T ss_pred HHHHcCCCH
Confidence 777777643
No 125
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.7e-13 Score=144.80 Aligned_cols=189 Identities=16% Similarity=0.202 Sum_probs=134.4
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEe-
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI- 234 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~- 234 (420)
..+.+++++.+|++|+|++..++.|..++.. -..+..+|||||+|+|||++|+++|+.+.+.....+
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~ 79 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDG 79 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccC
Confidence 4456788999999999999999999998875 134668999999999999999999998765422111
Q ss_pred ------cc------hhhhh----------hhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 235 ------GS------ELVQK----------YVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 235 ------~~------~l~~~----------~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
|. .+... -...+-..+|.+...+.. ....|+||||+|.+ +...
T Consensus 80 ~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a 148 (598)
T PRK09111 80 GPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAA 148 (598)
T ss_pred CCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHH
Confidence 00 00000 001123456666665543 34569999999998 3445
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
++.|+..|++ +...+++|++|+.++.+.+.+++ |+ ..+.|..|+.++....++..+++.+.. .+..+..|+
T Consensus 149 ~naLLKtLEe-----Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 149 FNALLKTLEE-----PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred HHHHHHHHHh-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5666666554 35678888888888888888888 87 689999999999999998888766554 223456667
Q ss_pred hhCCCCcc
Q 014712 368 RLCPNSTG 375 (420)
Q Consensus 368 ~~t~g~sg 375 (420)
..+.|..+
T Consensus 221 ~~a~Gdlr 228 (598)
T PRK09111 221 RAAEGSVR 228 (598)
T ss_pred HHcCCCHH
Confidence 77766433
No 126
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.53 E-value=2.5e-13 Score=137.78 Aligned_cols=191 Identities=17% Similarity=0.267 Sum_probs=125.1
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEEecchhhh
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQ 240 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v~~~~l~~ 240 (420)
..+.+.|.++.+++|...+...+.+ ..+.+++||||||||||++++.+++++ +..+++++|.....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3355899999999999998653222 345679999999999999999999876 57788898864322
Q ss_pred h----------hhh--------hhHHHHHHHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC
Q 014712 241 K----------YVG--------EGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (420)
Q Consensus 241 ~----------~~g--------~~~~~v~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 301 (420)
. ..+ ........+...... ..+.||+|||+|.+.... . +..+..++..++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~---~~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------G---NDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------C---chHHHHHHHhhhc
Confidence 1 111 012223333333332 456899999999996211 1 2344555544433
Q ss_pred CcCCCCeEEEEEeCCCC---CCCccccCcCccc-EEEEccCCCHHHHHHHHHHHHhcC---CCCCCccHHHHHhhCCCCc
Q 014712 302 FDARGNIKVLMATNRPD---TLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTM---NCERDIRFELLSRLCPNST 374 (420)
Q Consensus 302 ~~~~~~v~vI~ttn~~~---~ld~al~r~gRfd-~~i~~~~Pd~~~R~~Il~~~~~~~---~~~~~v~l~~la~~t~g~s 374 (420)
.. ..++.+|+++|..+ .+++.+.+ ||. ..+.|++++.++..+|++.+++.- ..-.+..++.+++.+.+.+
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 22 23788999998763 46677766 553 578999999999999999887532 1112333677788886655
Q ss_pred ccccc
Q 014712 375 GKHSP 379 (420)
Q Consensus 375 gadl~ 379 (420)
| |++
T Consensus 246 G-d~r 249 (394)
T PRK00411 246 G-DAR 249 (394)
T ss_pred C-cHH
Confidence 5 443
No 127
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.52 E-value=4e-14 Score=141.45 Aligned_cols=177 Identities=27% Similarity=0.391 Sum_probs=125.8
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCC-CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhh-hh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EG 246 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi-~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-~~~g-~~ 246 (420)
|+|++++++.+..++........+...... ..|.++||+||||||||++|+++|..++.+|+.++++++.. .|+| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 899999999999888542222111111110 13578999999999999999999999999999999998875 5777 44
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 014712 247 ARMVRELFQMAR-------------------------------------------------------------------- 258 (420)
Q Consensus 247 ~~~v~~~f~~a~-------------------------------------------------------------------- 258 (420)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 556666655550
Q ss_pred ----------------------------------------------------------------------hCCCcEEEec
Q 014712 259 ----------------------------------------------------------------------SKKACIVFFD 268 (420)
Q Consensus 259 ----------------------------------------------------------------------~~~p~Il~iD 268 (420)
...-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0133599999
Q ss_pred CcccccCCccCCC-CCCCHHHHHHHHHHHHHhc-----CCcCCCCeEEEEEe----CCCCCCCccccCcCcccEEEEccC
Q 014712 269 EVDAIGGARFDDG-VGGDNEVQRTMLEIVNQLD-----GFDARGNIKVLMAT----NRPDTLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 269 EiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l~-----~~~~~~~v~vI~tt----n~~~~ld~al~r~gRfd~~i~~~~ 338 (420)
|||+|+....+.+ .-....+|+.|+.+++--. +.-...++.+|++. ..|++|-|.|.. ||..++.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCC
Confidence 9999987643211 2233557888777765310 11234678888765 346777888887 9999999999
Q ss_pred CCHHHHHHHH
Q 014712 339 PDLESRTQIF 348 (420)
Q Consensus 339 Pd~~~R~~Il 348 (420)
++.++-..||
T Consensus 335 L~~~dL~~IL 344 (443)
T PRK05201 335 LTEEDFVRIL 344 (443)
T ss_pred CCHHHHHHHh
Confidence 9999988877
No 128
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.2e-13 Score=140.24 Aligned_cols=178 Identities=16% Similarity=0.212 Sum_probs=123.5
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---------
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~--------- 229 (420)
.+++++.+|++|+|++.+++.|+.++.. | ..+..+|||||||+|||++|+++|+.+.+.
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 4568899999999999999999998875 1 345679999999999999999999988652
Q ss_pred -----------------------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCC
Q 014712 230 -----------------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGV 282 (420)
Q Consensus 230 -----------------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~ 282 (420)
++.+++.. ..+-..++.+...+. .....|+||||+|.+
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l--------- 139 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML--------- 139 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC---------
Confidence 11111110 011234555444442 233459999999998
Q ss_pred CCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCc
Q 014712 283 GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDI 361 (420)
Q Consensus 283 ~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v 361 (420)
+...++.++..++. +...+++|++|+.+..+.+++.+ |+ ..++|..++.++-...++..++..+.. ++.
T Consensus 140 --~~~~~~~LLk~LEe-----p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~ 209 (397)
T PRK14955 140 --SIAAFNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDAD 209 (397)
T ss_pred --CHHHHHHHHHHHhc-----CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 33445555555442 34567777788778888888887 76 478899999988888888877655432 233
Q ss_pred cHHHHHhhCCCC
Q 014712 362 RFELLSRLCPNS 373 (420)
Q Consensus 362 ~l~~la~~t~g~ 373 (420)
.++.|+..+.|-
T Consensus 210 al~~l~~~s~g~ 221 (397)
T PRK14955 210 ALQLIGRKAQGS 221 (397)
T ss_pred HHHHHHHHcCCC
Confidence 466777777763
No 129
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.51 E-value=3.9e-13 Score=115.21 Aligned_cols=140 Identities=43% Similarity=0.667 Sum_probs=96.6
Q ss_pred ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhhHH
Q 014712 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGAR 248 (420)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~~~ 248 (420)
|.+..++.+...+.. ....+++++||||||||++++.+++.+ +.+++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 556667777766654 245689999999999999999999988 8899999988765543322221
Q ss_pred H---HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCC-cCCCCeEEEEEeCCCC--CCCc
Q 014712 249 M---VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-DARGNIKVLMATNRPD--TLDP 322 (420)
Q Consensus 249 ~---v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~-~~~~~v~vI~ttn~~~--~ld~ 322 (420)
. ....+.......+.+|++||++.+ .......+.+++...... ....++.+|+++|... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 122233344567889999999986 233445555655554321 0136788999999876 6777
Q ss_pred cccCcCcccEEEEcc
Q 014712 323 ALLRPGRLDRKVEFG 337 (420)
Q Consensus 323 al~r~gRfd~~i~~~ 337 (420)
.+.+ ||+..+.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 7777 888777765
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.50 E-value=3e-13 Score=129.94 Aligned_cols=136 Identities=28% Similarity=0.417 Sum_probs=98.5
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecch------hhhhhhhhhHHHH-HH-------------------HHH
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE------LVQKYVGEGARMV-RE-------------------LFQ 255 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~------l~~~~~g~~~~~v-~~-------------------~f~ 255 (420)
..+++|+||||||||++|+++|..++.+++.++|.. +.+.+.+.....+ .. .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 568999999999999999999999999999998754 3333322111110 00 111
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc----CC-------cCCCCeEEEEEeCCC-----CC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GF-------DARGNIKVLMATNRP-----DT 319 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~-------~~~~~v~vI~ttn~~-----~~ 319 (420)
.|.. .+.+|+||||+.+ +++++..|+.++++-. +. ....++.||+|+|.. ..
T Consensus 101 ~A~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 1222 2359999999996 6888999999887521 10 122467899999975 35
Q ss_pred CCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 320 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 320 ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
+++++++ || ..+.++.|+.++..+|++.++
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 6889999 98 789999999999999999875
No 131
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4e-13 Score=142.22 Aligned_cols=183 Identities=14% Similarity=0.212 Sum_probs=126.0
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEE------
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR------ 232 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~------ 232 (420)
.+++++.+|++|+|++.+++.|+.++.. -.-+.++||+||+|||||++|+++|+.+.+.-..
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 4568899999999999999999998865 1345579999999999999999999988662100
Q ss_pred ----Eecch---hh----------hhhhh---hhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 233 ----VIGSE---LV----------QKYVG---EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 233 ----v~~~~---l~----------~~~~g---~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
-.|.. .. ..+.+ .+...++.+...+. .....|++|||+|.+ +...
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------t~~a 143 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------STAA 143 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------CHHH
Confidence 00000 00 00011 11334555544442 234569999999998 3444
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
++.|+..+++ +...+++|++|+.+..+.+.+++ |+ ..++|..++..+-...++..+++.+.. ++..++.|+
T Consensus 144 ~naLLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 144 FNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555553 34567777888888888888888 77 789999999998888888877655532 333467778
Q ss_pred hhCCC
Q 014712 368 RLCPN 372 (420)
Q Consensus 368 ~~t~g 372 (420)
.++.|
T Consensus 216 ~~s~G 220 (620)
T PRK14954 216 RKAQG 220 (620)
T ss_pred HHhCC
Confidence 88877
No 132
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.49 E-value=2.3e-13 Score=137.41 Aligned_cols=179 Identities=23% Similarity=0.300 Sum_probs=118.8
Q ss_pred ccccHHHHHHHHHhhhcccCChhh----hhhcCC-CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEK----FVKLGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYV 243 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~----~~~~gi-~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-~~~ 243 (420)
|+|++++++.+..++....+.... ....++ ....++||+||||||||++|+++|..++.+|..+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 899999999998877432211100 000011 12357999999999999999999999999999999887653 466
Q ss_pred hhh-HHHHHHHHHHH----HhCCCcEEEecCcccccCCccCCCCC---CCHHHHHHHHHHHHHhc------C--CcCCCC
Q 014712 244 GEG-ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVG---GDNEVQRTMLEIVNQLD------G--FDARGN 307 (420)
Q Consensus 244 g~~-~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~---~~~~~~~~l~~ll~~l~------~--~~~~~~ 307 (420)
|.. +..+..++..+ ....++||||||||.+..++.+++.. ....+|+.|+++|+... + ..+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 663 34444444322 23467799999999998754332211 12368888888884210 0 112245
Q ss_pred eEEEEEeCCC---------------------------C-----------------------CCCccccCcCcccEEEEcc
Q 014712 308 IKVLMATNRP---------------------------D-----------------------TLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 308 v~vI~ttn~~---------------------------~-----------------------~ld~al~r~gRfd~~i~~~ 337 (420)
.++|+|+|-. + -+.|+|+. |++.++.|.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecC
Confidence 6788887751 0 02355555 999999999
Q ss_pred CCCHHHHHHHHHH
Q 014712 338 LPDLESRTQIFKI 350 (420)
Q Consensus 338 ~Pd~~~R~~Il~~ 350 (420)
+.+.++..+|+..
T Consensus 317 pL~~~~L~~Il~~ 329 (413)
T TIGR00382 317 KLDEEALIAILTK 329 (413)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998875
No 133
>PRK06620 hypothetical protein; Validated
Probab=99.47 E-value=6.1e-13 Score=123.86 Aligned_cols=164 Identities=18% Similarity=0.302 Sum_probs=107.0
Q ss_pred ccCCCCcccc-cccc--HHHHHHHHHhhhcccCChhhhhhcCCCC-CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 160 EEKPDVTYND-VGGC--KEQIEKMREVVELPMLHPEKFVKLGIDP-PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 160 ~~~~~~~~~~-i~G~--~~~~~~l~~~i~~~l~~~~~~~~~gi~~-~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
...+..+|++ ++|. ..+...++++...+ +..+ ...++||||||||||||++++++..+..++. .
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~ 75 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGF----------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--D 75 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHcc----------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--h
Confidence 3455667888 3443 44666666665421 2223 2679999999999999999999988754322 1
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
... . ...+ ....+|+|||||.+ .+..+..+++.+. ..++.++|+++.
T Consensus 76 ~~~-------~----~~~~-----~~~d~lliDdi~~~--------------~~~~lf~l~N~~~---e~g~~ilits~~ 122 (214)
T PRK06620 76 IFF-------N----EEIL-----EKYNAFIIEDIENW--------------QEPALLHIFNIIN---EKQKYLLLTSSD 122 (214)
T ss_pred hhh-------c----hhHH-----hcCCEEEEeccccc--------------hHHHHHHHHHHHH---hcCCEEEEEcCC
Confidence 110 0 0111 13369999999954 1245667776654 245566666665
Q ss_pred CCCC--CCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhcC--CCCCCccHHHHHhhCCC
Q 014712 316 RPDT--LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTM--NCERDIRFELLSRLCPN 372 (420)
Q Consensus 316 ~~~~--ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~~--~~~~~v~l~~la~~t~g 372 (420)
.|.. + ++|++ |+. ..+.+..|+.+.+..+++.++... .+++++ .+.|+..++|
T Consensus 123 ~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~ 181 (214)
T PRK06620 123 KSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR 181 (214)
T ss_pred Cccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC
Confidence 5544 5 78888 764 389999999999999998888643 444443 7778888766
No 134
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=5.7e-13 Score=141.59 Aligned_cols=178 Identities=15% Similarity=0.242 Sum_probs=123.4
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcE-------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF------- 230 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~------- 230 (420)
+.+++++.+|++|+|++.+++.|+.++... ..+..+|||||+|+|||++|+++|+.+.+..
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~ 73 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP 73 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 357789999999999999999999988751 2345689999999999999999999875422
Q ss_pred ------------------EEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 231 ------------------IRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 231 ------------------i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
+.++... ..+...++.+...+.. ....|+||||+|.+ +.+.
T Consensus 74 c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a 136 (585)
T PRK14950 74 CGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAA 136 (585)
T ss_pred CccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHH
Confidence 1111110 1112334444433322 34569999999988 3444
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
++.|+..++. ...++++|++++..+.+.+.+++ |+ ..+.|..++..+...+++..+.+.++. ++..+..|+
T Consensus 137 ~naLLk~LEe-----pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La 208 (585)
T PRK14950 137 FNALLKTLEE-----PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA 208 (585)
T ss_pred HHHHHHHHhc-----CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555544443 24567788888888888888887 77 578899999999888888887665543 222366777
Q ss_pred hhCCC
Q 014712 368 RLCPN 372 (420)
Q Consensus 368 ~~t~g 372 (420)
..+.|
T Consensus 209 ~~s~G 213 (585)
T PRK14950 209 RAATG 213 (585)
T ss_pred HHcCC
Confidence 77766
No 135
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=9.8e-13 Score=145.04 Aligned_cols=167 Identities=26% Similarity=0.383 Sum_probs=119.0
Q ss_pred cccccccHHHHHHHHHhhhcccCChhhhhhcCCCC---C-CcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhh
Q 014712 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---P-KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (420)
Q Consensus 167 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~---~-~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~ 239 (420)
...|+|++.+++.+...+... ..|+.. | ..++|+||+|||||++|+++|..+ +.+++.++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 345899999999999999762 223322 2 358999999999999999999876 4679999998875
Q ss_pred hhh-----hhhhHHH-----HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc------
Q 014712 240 QKY-----VGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ 303 (420)
Q Consensus 240 ~~~-----~g~~~~~-----v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------ 303 (420)
... +|....+ -..+....+....++|+|||++.+ ++.++..++++++.-.-.+
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEE
Confidence 432 1111111 111223334455589999999986 7889999999987531111
Q ss_pred CCCCeEEEEEeCCC-------------------------CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 304 ARGNIKVLMATNRP-------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 304 ~~~~v~vI~ttn~~-------------------------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
.-.+.+||+|||.. ..+.|+|+. |+|.++.|.+++.+....|++.++..
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 12356789999962 124567887 99999999999999999998877754
No 136
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=1.5e-12 Score=133.98 Aligned_cols=154 Identities=18% Similarity=0.298 Sum_probs=109.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEEecchhhhhhhhhhHH---HHHHHHHHHHhCCCcEEEecCcccc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQKYVGEGAR---MVRELFQMARSKKACIVFFDEVDAI 273 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v~~~~l~~~~~g~~~~---~v~~~f~~a~~~~p~Il~iDEiD~l 273 (420)
.++++|||++|+|||||++++++++ +..++++++.++...+...... .+..... +...+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~--~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKN--EICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHH--HhccCCEEEEeccccc
Confidence 3579999999999999999999954 5778899998887766544222 1222111 2245679999999988
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC----CCCCccccCcCccc--EEEEccCCCHHHHHHH
Q 014712 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP----DTLDPALLRPGRLD--RKVEFGLPDLESRTQI 347 (420)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~----~~ld~al~r~gRfd--~~i~~~~Pd~~~R~~I 347 (420)
.+ ....+..+..+++.+.. .++ .+|+|++.+ ..+++.|.+ ||. ..+.+.+|+.++|.+|
T Consensus 219 ~~---------k~~~~e~lf~l~N~~~~---~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SY---------KEKTNEIFFTIFNNFIE---NDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cC---------CHHHHHHHHHHHHHHHH---cCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 43 45678888888887652 223 467777764 345788888 774 5889999999999999
Q ss_pred HHHHHhcCCCC---CCccHHHHHhhCCC
Q 014712 348 FKIHTRTMNCE---RDIRFELLSRLCPN 372 (420)
Q Consensus 348 l~~~~~~~~~~---~~v~l~~la~~t~g 372 (420)
++..++..++. ++.-++.|+..+.|
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~g 311 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSD 311 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCC
Confidence 99999764431 22235666666665
No 137
>PHA02244 ATPase-like protein
Probab=99.46 E-value=1.5e-12 Score=128.35 Aligned_cols=128 Identities=23% Similarity=0.285 Sum_probs=87.7
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh---hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK---YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~---~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r 277 (420)
.+.+++|+||||||||++|+++|..++.+|+.++...-... +..........-|..|. ....+|+|||++.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a---- 192 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS---- 192 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcC----
Confidence 35679999999999999999999999999999985311000 11111111111222332 34569999999987
Q ss_pred cCCCCCCCHHHHHHHHHHHHHh-----c-CCcCCCCeEEEEEeCCC-----------CCCCccccCcCcccEEEEccCCC
Q 014712 278 FDDGVGGDNEVQRTMLEIVNQL-----D-GFDARGNIKVLMATNRP-----------DTLDPALLRPGRLDRKVEFGLPD 340 (420)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~l-----~-~~~~~~~v~vI~ttn~~-----------~~ld~al~r~gRfd~~i~~~~Pd 340 (420)
+++++..|..++..- . .+....++.+|+|+|.+ ..+++++++ || ..++|..|+
T Consensus 193 -------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~ 262 (383)
T PHA02244 193 -------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDE 262 (383)
T ss_pred -------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCc
Confidence 577777777777531 1 11234678999999973 567899999 99 679999998
Q ss_pred HHH
Q 014712 341 LES 343 (420)
Q Consensus 341 ~~~ 343 (420)
..+
T Consensus 263 ~~E 265 (383)
T PHA02244 263 KIE 265 (383)
T ss_pred HHH
Confidence 433
No 138
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.1e-12 Score=139.43 Aligned_cols=178 Identities=16% Similarity=0.246 Sum_probs=130.4
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------- 229 (420)
+.+++++.+|++|+|++.+++.|..++.. -..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 45678899999999999999999999875 1345569999999999999999999987532
Q ss_pred -----------------EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
++.+++.. ..+...++.+...+.. ....|++|||+|.+ +...
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a 137 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAA 137 (614)
T ss_pred CCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHH
Confidence 22222211 1123345555554432 33459999999998 4455
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-IRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~-v~l~~la 367 (420)
++.|+..|++ +...+++|++|+.+..+-+.+++ |+ ..++|..++..+-...++..+.+.++.-+ ..+..|+
T Consensus 138 ~naLLK~LEe-----pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 138 FNAFLKTLEE-----PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred HHHHHHHHhC-----CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666664 34567788888888889999998 77 67999999999988888888877666522 3467788
Q ss_pred hhCCC
Q 014712 368 RLCPN 372 (420)
Q Consensus 368 ~~t~g 372 (420)
..+.|
T Consensus 210 ~~s~g 214 (614)
T PRK14971 210 QKADG 214 (614)
T ss_pred HHcCC
Confidence 88776
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.44 E-value=9.6e-13 Score=144.78 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=119.2
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCC---CCC-cceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID---PPK-GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK 241 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~---~~~-~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~ 241 (420)
.|+|++.+++.+.+.+... +.|+. .|. .+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 4899999999999999762 22332 234 37999999999999999999987 457899999887543
Q ss_pred -----hhhhhHHHH-----HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC------C
Q 014712 242 -----YVGEGARMV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA------R 305 (420)
Q Consensus 242 -----~~g~~~~~v-----~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~------~ 305 (420)
.+|....++ ..+....+.+.++||+||||+.. ++.+++.++++++...-.+. -
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEec
Confidence 122211111 12344556678899999999986 78889999999876421111 2
Q ss_pred CCeEEEEEeCCCC-----------------------------CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 306 GNIKVLMATNRPD-----------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 306 ~~v~vI~ttn~~~-----------------------------~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
.+.+||+|||... .+.|++++ |++ +|.|.+.+.++..+|+...+..
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 4788999998521 14567777 896 8999999999999999877644
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.44 E-value=1.5e-12 Score=138.83 Aligned_cols=170 Identities=24% Similarity=0.371 Sum_probs=116.4
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CCcE
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 230 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~ 230 (420)
..++.+|++++|++..++.+...+.. ..+.+++|+||||||||++|+++++.. +.+|
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 35677899999999999988776643 235579999999999999999998754 4578
Q ss_pred EEEecchhhh-------hhhhhhHH----HHHHHHHH----------HHhCCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 231 IRVIGSELVQ-------KYVGEGAR----MVRELFQM----------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 231 i~v~~~~l~~-------~~~g~~~~----~v~~~f~~----------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
+.++|..+.. ...+.... ..+..+.. .......+|||||++.+ +...|
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHH
Confidence 9999876521 11111000 00011110 01123459999999987 67788
Q ss_pred HHHHHHHHHhcC------C---------------c--CCCCeEEEEE-eCCCCCCCccccCcCcccEEEEccCCCHHHHH
Q 014712 290 RTMLEIVNQLDG------F---------------D--ARGNIKVLMA-TNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (420)
Q Consensus 290 ~~l~~ll~~l~~------~---------------~--~~~~v~vI~t-tn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~ 345 (420)
..+..+++.-.- + . ....+++|++ |+.++.++++|++ ||. .+.|++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 888888865210 0 0 1123556654 4568889999988 885 6789999999999
Q ss_pred HHHHHHHhcCCC
Q 014712 346 QIFKIHTRTMNC 357 (420)
Q Consensus 346 ~Il~~~~~~~~~ 357 (420)
.|++.++.+.++
T Consensus 360 ~Il~~~a~~~~v 371 (615)
T TIGR02903 360 LIVLNAAEKINV 371 (615)
T ss_pred HHHHHHHHHcCC
Confidence 999999876543
No 141
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.44 E-value=1e-12 Score=145.29 Aligned_cols=165 Identities=27% Similarity=0.411 Sum_probs=120.4
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCC----CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~----~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~ 240 (420)
..|+|++.+++.+...+... ..|+. |...+||+||+|||||++|+++|..+ +.++++++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 34999999999999999762 22322 33468999999999999999999976 56899999987644
Q ss_pred hh-----hhhhHHH-----HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc------C
Q 014712 241 KY-----VGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------A 304 (420)
Q Consensus 241 ~~-----~g~~~~~-----v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~ 304 (420)
.. .|....+ .+.+....+....+||+||||+.+ ++.+++.|+++++.-.-.+ .
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEe
Confidence 32 2221111 123344445566789999999987 7889999999997532111 1
Q ss_pred CCCeEEEEEeCCCC-------------------------CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHh
Q 014712 305 RGNIKVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 305 ~~~v~vI~ttn~~~-------------------------~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
-.+.+||+|||... .+.|.|+. |+|.++.|.+++.+...+|+...+.
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 24678999999721 13466776 9999999999999999998887764
No 142
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.42 E-value=6.8e-13 Score=136.38 Aligned_cols=185 Identities=19% Similarity=0.304 Sum_probs=137.7
Q ss_pred ccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEE-E-Eecc-
Q 014712 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI-R-VIGS- 236 (420)
Q Consensus 160 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i-~-v~~~- 236 (420)
.++++.+|++++|++.+...|+.++..- +-..++||+||.|||||++||.+|+.+++.-- . -.|.
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 4688999999999999999999999761 33558999999999999999999998765421 0 0011
Q ss_pred -----hhhh----------hhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHH
Q 014712 237 -----ELVQ----------KYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (420)
Q Consensus 237 -----~l~~----------~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (420)
++.. .-...+-..+|++.+.+. ...+.|++|||+|.+ +. ..+..||.
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~---~afNALLK 141 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SK---QAFNALLK 141 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hH---HHHHHHhc
Confidence 1100 011224445666666654 355679999999998 23 34555565
Q ss_pred HhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHhhCCCCcc
Q 014712 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-IRFELLSRLCPNSTG 375 (420)
Q Consensus 298 ~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~-v~l~~la~~t~g~sg 375 (420)
.+. .+...|.+|++|..++.+++.+++ |+ ..+.|...+.++....|...+.+.++.-+ --+..+|+.++|-..
T Consensus 142 TLE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 142 TLE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred ccc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChh
Confidence 555 467889999999999999999999 88 77889999999999999999987777633 347888998888444
No 143
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.42 E-value=3.4e-12 Score=132.61 Aligned_cols=199 Identities=21% Similarity=0.264 Sum_probs=139.5
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhh----hc-------------------CCCCCCcceeeCCCC
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFV----KL-------------------GIDPPKGVLCYGPPG 212 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~----~~-------------------gi~~~~~vLL~GppG 212 (420)
..|++++.+..|.|+.|.+..-+.+..|+.. ..+..|. ++ +-++.+-+||+||||
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~--WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQ--WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHh--hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 4899999999999999999999999888864 2444444 11 112335688999999
Q ss_pred ChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHH--------hCCCcEEEecCcccccCCccCCCCCC
Q 014712 213 TGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR--------SKKACIVFFDEVDAIGGARFDDGVGG 284 (420)
Q Consensus 213 tGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~--------~~~p~Il~iDEiD~l~~~r~~~~~~~ 284 (420)
-||||||+.+|+++|..++.+++++-... ..++..+..|. ...|.+|++||||- +
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG-----------a 399 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG-----------A 399 (877)
T ss_pred CChhHHHHHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecccC-----------C
Confidence 99999999999999999999999875432 22222222221 26788999999985 3
Q ss_pred CHHHHHHHHHHHHHh----cCCcCC------------CCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHH
Q 014712 285 DNEVQRTMLEIVNQL----DGFDAR------------GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (420)
Q Consensus 285 ~~~~~~~l~~ll~~l----~~~~~~------------~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il 348 (420)
.....++++.++..- .|-... =...||+.||... -|+|+.---|-.++.|.+|......+-|
T Consensus 400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL 477 (877)
T KOG1969|consen 400 PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERL 477 (877)
T ss_pred cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHH
Confidence 567778888887731 111110 0246999999643 5666532257789999999988888888
Q ss_pred HHHHhcCCCCCC-ccHHHHHhhCCCCcccccc
Q 014712 349 KIHTRTMNCERD-IRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 349 ~~~~~~~~~~~~-v~l~~la~~t~g~sgadl~ 379 (420)
+..+.+.++.-+ -.+..|+.+|++ ||+
T Consensus 478 ~~IC~rE~mr~d~~aL~~L~el~~~----DIR 505 (877)
T KOG1969|consen 478 NEICHRENMRADSKALNALCELTQN----DIR 505 (877)
T ss_pred HHHHhhhcCCCCHHHHHHHHHHhcc----hHH
Confidence 888877666522 234555555554 766
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.41 E-value=3.9e-13 Score=131.14 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=104.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh--hhhhhH----------HHHHHHHHHHHhCCCcEEEec
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGA----------RMVRELFQMARSKKACIVFFD 268 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~--~~g~~~----------~~v~~~f~~a~~~~p~Il~iD 268 (420)
..++++|.||||||||++|+++|..++.+++++++...... .+|... ......+..|. ..++++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 45689999999999999999999999999999998765544 333211 11112233333 345789999
Q ss_pred CcccccCCccCCCCCCCHHHHHHHHHHHHH-----hc----CCcCCCCeEEEEEeCCCC------------CCCccccCc
Q 014712 269 EVDAIGGARFDDGVGGDNEVQRTMLEIVNQ-----LD----GFDARGNIKVLMATNRPD------------TLDPALLRP 327 (420)
Q Consensus 269 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~-----l~----~~~~~~~v~vI~ttn~~~------------~ld~al~r~ 327 (420)
|+|.. +++++..+..+|+. +. .+....++.||+|+|... .++++++.
T Consensus 142 Ein~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99986 67888888888873 11 123455789999999854 46789999
Q ss_pred CcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 328 GRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 328 gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
||-.++.+.+|+.+.-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99778899999999999999877544
No 145
>PRK09087 hypothetical protein; Validated
Probab=99.41 E-value=2.1e-12 Score=121.29 Aligned_cols=167 Identities=21% Similarity=0.230 Sum_probs=105.0
Q ss_pred cccCCCCcccccc--c-cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 159 VEEKPDVTYNDVG--G-CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 159 ~~~~~~~~~~~i~--G-~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
+...+..+|++.+ + +..+...++++.. .+...++||||+|||||||+++++...+..+ ++.
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~~--------------~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~ 75 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRAAVSLVDHWPN--------------WPSPVVVLAGPVGSGKTHLASIWREKSDALL--IHP 75 (226)
T ss_pred CCCCCCCChhceeecCchHHHHHHHHhccc--------------CCCCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecH
Confidence 3445566888843 3 3334443333221 1233599999999999999999998876553 333
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
..+... .+..... .+|+|||++.+.. + +..+.++++.+. ..++.+||+++.
T Consensus 76 ~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~---------~---~~~lf~l~n~~~---~~g~~ilits~~ 126 (226)
T PRK09087 76 NEIGSD-----------AANAAAE---GPVLIEDIDAGGF---------D---ETGLFHLINSVR---QAGTSLLMTSRL 126 (226)
T ss_pred HHcchH-----------HHHhhhc---CeEEEECCCCCCC---------C---HHHHHHHHHHHH---hCCCeEEEECCC
Confidence 222211 1111111 3899999997621 1 355777777664 234444444444
Q ss_pred CCC---CCCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 316 RPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 316 ~~~---~ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
.|. ...+.|++ |+. ..+++..|+.+.|..+++.++...++. ++.-++.|++.+.|
T Consensus 127 ~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 127 WPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred ChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 443 23678888 664 699999999999999999999664443 23347888888875
No 146
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=5.6e-12 Score=126.27 Aligned_cols=184 Identities=18% Similarity=0.150 Sum_probs=127.3
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEE----------
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI---------- 231 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i---------- 231 (420)
..+.++++|+|++.+++.|...+.. -..+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5677899999999999999998876 134567999999999999999999997632100
Q ss_pred ---EE--ecc-----------hhhhhhh---hh--------hHHHHHHHHHHH----HhCCCcEEEecCcccccCCccCC
Q 014712 232 ---RV--IGS-----------ELVQKYV---GE--------GARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDD 280 (420)
Q Consensus 232 ---~v--~~~-----------~l~~~~~---g~--------~~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~ 280 (420)
.+ .|. ++..-.. +. .-..+|.+...+ ....+.|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 00 000 0000000 00 123344444433 2356789999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCC
Q 014712 281 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD 360 (420)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~ 360 (420)
+...++.|+..+++ +..++++|++|+.++.+.+.+++ |+ ..+.|++|+.++-.+++...... ..+
T Consensus 154 ----~~~aanaLLK~LEe-----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~ 218 (365)
T PRK07471 154 ----NANAANALLKVLEE-----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPD 218 (365)
T ss_pred ----CHHHHHHHHHHHhc-----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCH
Confidence 56777777777764 35677888999999999999988 88 78999999999888888765421 112
Q ss_pred ccHHHHHhhCCCCcccccc
Q 014712 361 IRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 361 v~l~~la~~t~g~sgadl~ 379 (420)
..+..++..+.|-.+.-+.
T Consensus 219 ~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 219 DPRAALAALAEGSVGRALR 237 (365)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 2235678888887775544
No 147
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=5.7e-12 Score=125.55 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=127.1
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-------EEEE-
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------FIRV- 233 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------~i~v- 233 (420)
..+..+++|+|++.+++.+..++..- .-+..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 46678889999999999999998761 345579999999999999999999987541 1000
Q ss_pred ---ecch-----------hh---hhh-h-------hhhHHHHHHHHHH----HHhCCCcEEEecCcccccCCccCCCCCC
Q 014712 234 ---IGSE-----------LV---QKY-V-------GEGARMVRELFQM----ARSKKACIVFFDEVDAIGGARFDDGVGG 284 (420)
Q Consensus 234 ---~~~~-----------l~---~~~-~-------g~~~~~v~~~f~~----a~~~~p~Il~iDEiD~l~~~r~~~~~~~ 284 (420)
.|.. +. ... . .-+-..+|.+... +..+...|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 0100 00 000 0 0011233433332 22345569999999998
Q ss_pred CHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHH
Q 014712 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFE 364 (420)
Q Consensus 285 ~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~ 364 (420)
+...++.++..+++ +..+..+|+.|+.++.+.|.+++ |+ ..+.|++|+.++-..++.......+++ +....
T Consensus 154 ~~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~ 224 (351)
T PRK09112 154 NRNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITE 224 (351)
T ss_pred CHHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHH
Confidence 56667777666654 34567778888889999999988 88 799999999999999988744332222 22356
Q ss_pred HHHhhCCCCcccccc
Q 014712 365 LLSRLCPNSTGKHSP 379 (420)
Q Consensus 365 ~la~~t~g~sgadl~ 379 (420)
.++..+.|-.+.-+.
T Consensus 225 ~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 225 ALLQRSKGSVRKALL 239 (351)
T ss_pred HHHHHcCCCHHHHHH
Confidence 778888887775555
No 148
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=6.1e-12 Score=123.94 Aligned_cols=172 Identities=10% Similarity=0.179 Sum_probs=120.5
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--------EEEEecch
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------FIRVIGSE 237 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~--------~i~v~~~~ 237 (420)
+|++|+|++.+++.++.++.. -..+..+||+||+|+|||++|+++|+.+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 688999999999999999864 1345678999999999999999999976332 22222210
Q ss_pred hhhhhhhhhHHHHHHHHHHH----HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 238 LVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 238 l~~~~~g~~~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
+.. -+-..++++...+ ......|++||++|.+ +.+.++.++..+++ +..++.+|++
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 110 1223355554433 2344569999999998 55666777666653 4667888888
Q ss_pred eCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcc
Q 014712 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTG 375 (420)
Q Consensus 314 tn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sg 375 (420)
|+.++.+.+.+++ |+ ..+.|+.|+.++-...++..... .. ....+.++..+.|..+
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGIPG 185 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCCHH
Confidence 8889999999999 87 68999999998877777655432 22 2235567777777555
No 149
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.39 E-value=7.5e-12 Score=125.32 Aligned_cols=183 Identities=23% Similarity=0.407 Sum_probs=124.4
Q ss_pred cCCCCcccc-ccccHHH--HHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEE
Q 014712 161 EKPDVTYND-VGGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIR 232 (420)
Q Consensus 161 ~~~~~~~~~-i~G~~~~--~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~ 232 (420)
-.+..+|++ ++|.... ......+.+.| | .+...++||||+|+|||||++|++++. +..+++
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g-~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y 148 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------G-GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY 148 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc----------C-CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe
Confidence 456678888 4444433 23333333332 1 145679999999999999999999975 446788
Q ss_pred EecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEE
Q 014712 233 VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (420)
Q Consensus 233 v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 312 (420)
+....+...++......-..-|+.-. .-.+++||+|+.+.+ ....+..+..+++.+.. .++ .||+
T Consensus 149 ~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g---------k~~~qeefFh~FN~l~~---~~k-qIvl 213 (408)
T COG0593 149 LTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG---------KERTQEEFFHTFNALLE---NGK-QIVL 213 (408)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC---------ChhHHHHHHHHHHHHHh---cCC-EEEE
Confidence 88888877776654444444565544 556999999999965 45568888888887752 334 4555
Q ss_pred EeCC-CCC---CCccccCcCcccE--EEEccCCCHHHHHHHHHHHHhcCC--CCCCccHHHHHhhCCC
Q 014712 313 ATNR-PDT---LDPALLRPGRLDR--KVEFGLPDLESRTQIFKIHTRTMN--CERDIRFELLSRLCPN 372 (420)
Q Consensus 313 ttn~-~~~---ld~al~r~gRfd~--~i~~~~Pd~~~R~~Il~~~~~~~~--~~~~v~l~~la~~t~g 372 (420)
|+.+ |.. +.+.|++ ||.. .+.+.+|+.+.|..||+..+...+ +++++ ...+|.....
T Consensus 214 tsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~~ 278 (408)
T COG0593 214 TSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLDR 278 (408)
T ss_pred EcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhc
Confidence 6554 544 4588888 7654 889999999999999999775444 43443 5566655443
No 150
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.9e-12 Score=125.99 Aligned_cols=161 Identities=21% Similarity=0.375 Sum_probs=118.9
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-----EEEEecchhhhhh--
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-----FIRVIGSELVQKY-- 242 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-----~i~v~~~~l~~~~-- 242 (420)
+.+.+++++++..++...+.+ ..|.++++||+||||||.+++.++.++... ++++||..+.+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 889999999999998765544 455679999999999999999999987433 8999997664432
Q ss_pred -------------hhh-hHHHHHHHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCC
Q 014712 243 -------------VGE-GARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (420)
Q Consensus 243 -------------~g~-~~~~v~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (420)
.|. .......+++.... ....||+|||+|.|.... +..|++|+...... ..+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-----------~~~LY~L~r~~~~~--~~~ 156 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-----------GEVLYSLLRAPGEN--KVK 156 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-----------chHHHHHHhhcccc--cee
Confidence 011 12223333333333 556799999999997542 16778887765543 567
Q ss_pred eEEEEEeCCC---CCCCccccCcCcc-cEEEEccCCCHHHHHHHHHHHHhc
Q 014712 308 IKVLMATNRP---DTLDPALLRPGRL-DRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 308 v~vI~ttn~~---~~ld~al~r~gRf-d~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
+.+|+.+|.. +.+++.+.+ ++ ...|.|++++.++...|++...+.
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 8899999986 578888887 43 246899999999999999988753
No 151
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.36 E-value=4.1e-12 Score=116.22 Aligned_cols=178 Identities=16% Similarity=0.249 Sum_probs=118.9
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-C----CcEE
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-D----ACFI 231 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-~----~~~i 231 (420)
.|++++++..++||+|+++.++.+.-+... | .-.+++|.|||||||||-+.++|+++ | -.++
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 499999999999999999999999987765 2 22379999999999999999999976 3 2345
Q ss_pred EEecchhhhhhhhhhHHHHHH---HHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 232 RVIGSELVQKYVGEGARMVRE---LFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 232 ~v~~~~l~~~~~g~~~~~v~~---~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
.+++++-.+. ..+|. .|.+-+- +...||++||.|.+ ....|+++..-++...
T Consensus 83 ELNASdeRGI------DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiyS---- 141 (333)
T KOG0991|consen 83 ELNASDERGI------DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIYS---- 141 (333)
T ss_pred hccCcccccc------HHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHHc----
Confidence 5666553322 22332 2333222 23359999999998 4556777777666542
Q ss_pred CCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 305 ~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
....+..++|....+-..+.+ |+ ..+.|...+..+...-+....+..++. .+.-++.+.-.++|
T Consensus 142 -~ttRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 142 -NTTRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred -ccchhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 345678889988777766776 66 455666666665555444444433332 12235666655555
No 152
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.34 E-value=1.8e-11 Score=111.64 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=100.0
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCc------------------------EEEEecchhhhhhhhhhHHHHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDAC------------------------FIRVIGSELVQKYVGEGARMVRELFQM 256 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~------------------------~i~v~~~~l~~~~~g~~~~~v~~~f~~ 256 (420)
.+..+|||||+|+|||++|+++++.+.+. +..+.... . ..+...++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 45679999999999999999999986432 12221110 0 0122344545544
Q ss_pred HHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccE
Q 014712 257 ARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDR 332 (420)
Q Consensus 257 a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~ 332 (420)
+.. ....|++|||+|.+ +...+..++..++. +..+..+|++|+.+..+.+++++ |+ .
T Consensus 88 ~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc-E
Confidence 432 44569999999998 34455555555543 34567788888888999999998 77 6
Q ss_pred EEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcc
Q 014712 333 KVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTG 375 (420)
Q Consensus 333 ~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sg 375 (420)
.+.|++|+.++..++++.. +++ +..++.++..+.|-.+
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGGSPG 186 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCCCcc
Confidence 8999999999988888776 343 3347778888777443
No 153
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.33 E-value=2.7e-11 Score=111.48 Aligned_cols=170 Identities=19% Similarity=0.290 Sum_probs=122.8
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
+...+++.+.+|.|.+.+++.|.+....++.. .|.++|||||..|||||+|+||+.++. +..++.|+-
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G---------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEG---------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcC---------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 34566788999999999999998877765443 577899999999999999999999876 556777776
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC-C-cCCCCeEEEE
Q 014712 236 SELVQKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-F-DARGNIKVLM 312 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~-~-~~~~~v~vI~ 312 (420)
.++.. +..++...+. ...-|||+|++-- ..+......|...| +| + ....||++-+
T Consensus 122 ~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e~gd~~yK~LKs~L---eG~ve~rP~NVl~YA 179 (287)
T COG2607 122 EDLAT---------LPDLVELLRARPEKFILFCDDLSF----------EEGDDAYKALKSAL---EGGVEGRPANVLFYA 179 (287)
T ss_pred HHHhh---------HHHHHHHHhcCCceEEEEecCCCC----------CCCchHHHHHHHHh---cCCcccCCCeEEEEE
Confidence 66532 2334444443 3446999999632 12233334444443 43 2 2356899999
Q ss_pred EeCCCCCCCccc--------------------cCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCC
Q 014712 313 ATNRPDTLDPAL--------------------LRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER 359 (420)
Q Consensus 313 ttn~~~~ld~al--------------------~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~ 359 (420)
|+|+-+.++..+ --+.||...+.|.+++.++-..|+..++++++++-
T Consensus 180 TSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 180 TSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 999866554211 11349999999999999999999999999988874
No 154
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.33 E-value=1.5e-11 Score=122.00 Aligned_cols=155 Identities=28% Similarity=0.307 Sum_probs=106.8
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHH
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARM 249 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~ 249 (420)
+.|.++.+..+..++.. ..++||-||||||||++|+++|..++.+|+++.|.......-..+...
T Consensus 26 ~~g~~~~~~~~l~a~~~---------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLA---------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHc---------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 66777776666655543 568999999999999999999999999999999875433211111111
Q ss_pred HHHH------HHHHHh--CCC--cEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc------C-CcCCCCeEEEE
Q 014712 250 VREL------FQMARS--KKA--CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------G-FDARGNIKVLM 312 (420)
Q Consensus 250 v~~~------f~~a~~--~~p--~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~-~~~~~~v~vI~ 312 (420)
+... |..... ... +|+++|||+.. ++.++.+|++.+++.. . +.-...++||+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 1110 000000 001 39999999985 7899999999998733 1 23346788888
Q ss_pred EeC-----CCCCCCccccCcCcccEEEEccCC-CHHHHHHHHHHHH
Q 014712 313 ATN-----RPDTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHT 352 (420)
Q Consensus 313 ttn-----~~~~ld~al~r~gRfd~~i~~~~P-d~~~R~~Il~~~~ 352 (420)
|+| ....+++++++ ||...+.+++| +..+...++....
T Consensus 160 T~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred ccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCc
Confidence 889 44678999999 99999999999 5444554544443
No 155
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.32 E-value=3.3e-12 Score=126.05 Aligned_cols=165 Identities=22% Similarity=0.329 Sum_probs=107.2
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-------CC--cEEE
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DA--CFIR 232 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-------~~--~~i~ 232 (420)
+.+..|++|+|++.+++.+.-.+..+ ...++||+|+||||||++|++++.-+ ++ .+..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 35678999999999999887654321 12479999999999999999999977 22 2221
Q ss_pred Eecc-hh--------hh-------hhhhhhHH-HHHH-HHHHH-------------HhCCCcEEEecCcccccCCccCCC
Q 014712 233 VIGS-EL--------VQ-------KYVGEGAR-MVRE-LFQMA-------------RSKKACIVFFDEVDAIGGARFDDG 281 (420)
Q Consensus 233 v~~~-~l--------~~-------~~~g~~~~-~v~~-~f~~a-------------~~~~p~Il~iDEiD~l~~~r~~~~ 281 (420)
+.+. ++ .. ...+.++. .+.. .+..+ ......+||+||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-------- 140 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-------- 140 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC--------
Confidence 1111 00 00 00000000 0000 00100 0112259999999997
Q ss_pred CCCCHHHHHHHHHHHHHhc------CC--cCCCCeEEEEEeCCCC-CCCccccCcCcccEEEEccCCCH-HHHHHHHHHH
Q 014712 282 VGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIH 351 (420)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~ttn~~~-~ld~al~r~gRfd~~i~~~~Pd~-~~R~~Il~~~ 351 (420)
++..|..+.+.+++-. |. ....++++|+|+|..+ .++++++. ||...+.++.|.. ++|.+|++..
T Consensus 141 ---~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 141 ---EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ---CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 6888999999887532 21 1234688888888654 58889999 9999999998866 8999999875
Q ss_pred H
Q 014712 352 T 352 (420)
Q Consensus 352 ~ 352 (420)
.
T Consensus 216 ~ 216 (334)
T PRK13407 216 D 216 (334)
T ss_pred h
Confidence 4
No 156
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=3e-11 Score=128.04 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=111.8
Q ss_pred cccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEE-E
Q 014712 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR-V 233 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~-v 233 (420)
..+|.+++.|.+++++.|.++.++.++.++... .++..+.+.++|+||||||||++++++|+.++..++. .
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 357999999999999999999999999998752 2233445569999999999999999999988755422 1
Q ss_pred ecc---hhhhhh------------hhhhHHHHHHHHHHHH----------hCCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 234 IGS---ELVQKY------------VGEGARMVRELFQMAR----------SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 234 ~~~---~l~~~~------------~g~~~~~v~~~f~~a~----------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
+.. .....+ .......++.++..+. .....||+|||++.+... ....
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~ 214 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRA 214 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHH
Confidence 111 000000 0112233444444443 134569999999987532 1222
Q ss_pred HHHHHHHHH-HhcCCcCCCCeEEEEEeCC-CC--------------CCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 289 QRTMLEIVN-QLDGFDARGNIKVLMATNR-PD--------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 289 ~~~l~~ll~-~l~~~~~~~~v~vI~ttn~-~~--------------~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
++ .++. ... ..+.+.+|++++. +. .|.+++++..|+ .+|.|.+.+.......|+..+
T Consensus 215 lq---~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 215 LH---EILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HH---HHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHH
Confidence 22 3333 111 2445566665552 21 133677753355 589999999999777777777
Q ss_pred hc
Q 014712 353 RT 354 (420)
Q Consensus 353 ~~ 354 (420)
..
T Consensus 288 ~~ 289 (637)
T TIGR00602 288 TI 289 (637)
T ss_pred Hh
Confidence 54
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.6e-11 Score=120.68 Aligned_cols=180 Identities=18% Similarity=0.242 Sum_probs=125.7
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc----------------
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------------- 229 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~---------------- 229 (420)
.|++|+|++.+++.++..+..- .-+..+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5789999999999999999761 335689999999999999999999975321
Q ss_pred --EEEEecchhh-hh--------hhh--------hhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCH
Q 014712 230 --FIRVIGSELV-QK--------YVG--------EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDN 286 (420)
Q Consensus 230 --~i~v~~~~l~-~~--------~~g--------~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~ 286 (420)
+..+...... ++ ..| -.-..+|.+...+. .....|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 1211110000 00 000 01123455544433 245679999999998 56
Q ss_pred HHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHH
Q 014712 287 EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELL 366 (420)
Q Consensus 287 ~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~l 366 (420)
..++.|+..|++ +. +.++|++|+.++.|-|.+++ |+ ..+.|++|+.++-.+++......... +.+...+
T Consensus 139 ~aaNaLLK~LEE-----Pp-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEE-----PG-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred HHHHHHHHHHhC-----CC-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 677777777765 23 56788899999999999999 88 88999999999988888876432111 2235788
Q ss_pred HhhCCCCcccccc
Q 014712 367 SRLCPNSTGKHSP 379 (420)
Q Consensus 367 a~~t~g~sgadl~ 379 (420)
+..+.|-.|.-+.
T Consensus 208 ~~~a~Gs~~~al~ 220 (314)
T PRK07399 208 LALAQGSPGAAIA 220 (314)
T ss_pred HHHcCCCHHHHHH
Confidence 8899887776555
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=3.9e-11 Score=118.62 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=106.6
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCc------------------------EEEEecchhhhhhhhhhHHHHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDAC------------------------FIRVIGSELVQKYVGEGARMVRELFQM 256 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~------------------------~i~v~~~~l~~~~~g~~~~~v~~~f~~ 256 (420)
.+..+||+||+|+|||++|+++|+.+.+. +..+....- .+ .-+-..+|++...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 46689999999999999999999976431 222211100 00 0122345555444
Q ss_pred HH----hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccE
Q 014712 257 AR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDR 332 (420)
Q Consensus 257 a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~ 332 (420)
+. .....|++||++|.+ +.+.++.++..+++ +.+++.+|++|+.++.+.|.+++ |+ .
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~ 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC-Q 158 (328)
T ss_pred HhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc-e
Confidence 33 345669999999998 56677777777764 45788999999999999999999 88 6
Q ss_pred EEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 333 KVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 333 ~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
.+.|++|+.++-.+.+...... ..+.....++.++.|-.+.-+.
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHHHHHH
Confidence 7999999999887777654311 1223345677888887765444
No 159
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.27 E-value=4.3e-11 Score=117.80 Aligned_cols=148 Identities=23% Similarity=0.351 Sum_probs=105.4
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC---------------------
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--------------------- 227 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~--------------------- 227 (420)
++.|.+.....+..++.... .-|..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 46778888888888876421 2233699999999999999999999875
Q ss_pred ---CcEEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc
Q 014712 228 ---ACFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (420)
Q Consensus 228 ---~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (420)
..++.++.++..... .....++.+-..... +...|++|||+|.+ +...++++...+.+
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--
Confidence 466677766654321 123344444433322 34579999999998 45667777776664
Q ss_pred CCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHH
Q 014712 301 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (420)
Q Consensus 301 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il 348 (420)
+..+..+|++||.++.+-+.+++ |+ ..+.|++|+...+....
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHh
Confidence 46788999999999999999999 88 78888876655444433
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.27 E-value=7.8e-11 Score=99.75 Aligned_cols=126 Identities=30% Similarity=0.447 Sum_probs=82.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCc---EEEEecchhhhhh--------------hhhhHHHHHHHHHHHHhCCCcE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSELVQKY--------------VGEGARMVRELFQMARSKKACI 264 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~---~i~v~~~~l~~~~--------------~g~~~~~v~~~f~~a~~~~p~I 264 (420)
+..++|+||||||||++++.+|..+... ++.+++....... ........+.++..+....+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999998765 7888776543321 2234556678888888877899
Q ss_pred EEecCcccccCCccCCCCCCCHHHHHHHHHH--HHHhcCCcCCCCeEEEEEeCC-CCCCCccccCcCcccEEEEccCC
Q 014712 265 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEI--VNQLDGFDARGNIKVLMATNR-PDTLDPALLRPGRLDRKVEFGLP 339 (420)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l--l~~l~~~~~~~~v~vI~ttn~-~~~ld~al~r~gRfd~~i~~~~P 339 (420)
|++||++.+... ......... ...........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDA----------EQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCH----------HHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999998542 222221110 000001122456789999996 3333444444 78888777654
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.7e-11 Score=126.80 Aligned_cols=191 Identities=24% Similarity=0.330 Sum_probs=144.6
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CC
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 228 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~ 228 (420)
.+....-.++-++|.++.++++.+.+....+ ++-+|.|+||+|||.++..+|.+. +.
T Consensus 161 t~~Ar~gklDPvIGRd~EI~r~iqIL~RR~K-------------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~ 227 (786)
T COG0542 161 TELAREGKLDPVIGRDEEIRRTIQILSRRTK-------------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDK 227 (786)
T ss_pred HHHHhcCCCCCCcChHHHHHHHHHHHhccCC-------------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCC
Confidence 3445566777799999999999999988443 367899999999999999999864 56
Q ss_pred cEEEEecchhhh--hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCC
Q 014712 229 CFIRVIGSELVQ--KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (420)
Q Consensus 229 ~~i~v~~~~l~~--~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (420)
.++.++...++. +|.|+.+..++.+.+......+.||||||||.+.+.....+ + .-+..+.|...|. ++
T Consensus 228 ~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RG 298 (786)
T COG0542 228 RIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RG 298 (786)
T ss_pred EEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cC
Confidence 778888877764 68999999999999999988899999999999987643222 1 2445556666554 67
Q ss_pred CeEEEEEeCCC-----CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCc-----cHHHHHhhCCCCc
Q 014712 307 NIKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI-----RFELLSRLCPNST 374 (420)
Q Consensus 307 ~v~vI~ttn~~-----~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v-----~l~~la~~t~g~s 374 (420)
.+.+|++|..- =.-|+||-| || ..|.+.-|+.++-..||+-.-.++.....| -+..-+.++.-|-
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 78899988743 235899999 99 788999999999999998766554433322 2444455555443
No 162
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.25 E-value=6.8e-12 Score=108.52 Aligned_cols=113 Identities=31% Similarity=0.412 Sum_probs=73.9
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh------hhhh--hHHHHHHHHHHHHhCCCcEEEecCcccccC
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK------YVGE--GARMVRELFQMARSKKACIVFFDEVDAIGG 275 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~------~~g~--~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~ 275 (420)
+|+|+||||||||++|+.+|..++.+++.+.++..... +.-. ........+..+. ..+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 48999999999999999999999999999988754322 1100 0000000000001 15679999999986
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHhcCC--------cCCC------CeEEEEEeCCCC----CCCccccCcCcc
Q 014712 276 ARFDDGVGGDNEVQRTMLEIVNQLDGF--------DARG------NIKVLMATNRPD----TLDPALLRPGRL 330 (420)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~--------~~~~------~v~vI~ttn~~~----~ld~al~r~gRf 330 (420)
+++++..+..+++.-.-. .... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 578888888888652211 0111 489999999987 89999999 87
No 163
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.25 E-value=1.8e-11 Score=121.13 Aligned_cols=165 Identities=21% Similarity=0.288 Sum_probs=109.0
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC-------CcEEEEe
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRVI 234 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~-------~~~i~v~ 234 (420)
.+...|++|+|+++.+..|.-.+..| ...++||.|++|||||++|++++..+. .+|....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 45568999999999999998887663 234899999999999999999987542 2232000
Q ss_pred ------cchhhhhh-------------------hhhhHHH-H-----HHHHHHHH---------hCCCcEEEecCccccc
Q 014712 235 ------GSELVQKY-------------------VGEGARM-V-----RELFQMAR---------SKKACIVFFDEVDAIG 274 (420)
Q Consensus 235 ------~~~l~~~~-------------------~g~~~~~-v-----~~~f~~a~---------~~~p~Il~iDEiD~l~ 274 (420)
++++.... .+.++.. + ...|.... .....+||+||++.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 00000000 0111111 0 11111110 112359999999998
Q ss_pred CCccCCCCCCCHHHHHHHHHHHHHh------cCC--cCCCCeEEEEEeCCCC-CCCccccCcCcccEEEEccCCC-HHHH
Q 014712 275 GARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPD-LESR 344 (420)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~ttn~~~-~ld~al~r~gRfd~~i~~~~Pd-~~~R 344 (420)
++..|..+++.+..- +|. ....++++|+|.|..+ .+.++++. ||...+.+..|+ .+.+
T Consensus 157 ----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 ----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 688899988888652 121 1234677777777654 58999999 999999999997 5999
Q ss_pred HHHHHHHH
Q 014712 345 TQIFKIHT 352 (420)
Q Consensus 345 ~~Il~~~~ 352 (420)
.+|++...
T Consensus 225 ~~il~~~~ 232 (350)
T CHL00081 225 VKIVEQRT 232 (350)
T ss_pred HHHHHhhh
Confidence 99998753
No 164
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=1.7e-11 Score=124.69 Aligned_cols=161 Identities=23% Similarity=0.394 Sum_probs=112.4
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE 237 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~ 237 (420)
.....+|++|+|.+.++.++.+.+.. ....+..|||.|.+||||.++|+++.+.. +.||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 34557899999999999999988876 23456789999999999999999999865 78999999975
Q ss_pred hhhh-------------hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CC
Q 014712 238 LVQK-------------YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF 302 (420)
Q Consensus 238 l~~~-------------~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~ 302 (420)
+-.. |.|....--..+|+.|..+ .||||||..+ +...|..|+..|++-. .+
T Consensus 307 iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 307 IPETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred CCHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEec
Confidence 5322 1222111123456655544 8999999887 7889999999998632 11
Q ss_pred c----CCCCeEEEEEeCCC--CCCCccccCcCcccE--EEEccCCCHHHHHH
Q 014712 303 D----ARGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ 346 (420)
Q Consensus 303 ~----~~~~v~vI~ttn~~--~~ld~al~r~gRfd~--~i~~~~Pd~~~R~~ 346 (420)
. -.-+|.||+|||+. +.+...=+|...|.| ++.+..|...+|.+
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~e 424 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKE 424 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcc
Confidence 1 12369999999974 222222122122222 77788888888876
No 165
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=9.6e-11 Score=116.19 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=105.7
Q ss_pred ccccccc-cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---------------
Q 014712 166 TYNDVGG-CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------------- 229 (420)
Q Consensus 166 ~~~~i~G-~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~--------------- 229 (420)
.|+.|.| ++.+++.++..+.. -..+..+|||||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4667766 99999999998864 1345678999999999999999999975321
Q ss_pred ---------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHH
Q 014712 230 ---------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (420)
Q Consensus 230 ---------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (420)
+..+... +.. -+-..++++...+. .+...|++|||+|.+ +.+.++.|+..+
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 2222110 000 11234455444332 234569999999998 566677776666
Q ss_pred HHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHH
Q 014712 297 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (420)
Q Consensus 297 ~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~ 350 (420)
++ +..++.+|++|+.+..+.|++++ |+ ..++|++|+.++-.+.++.
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 54 46788889999999999999999 88 8899999999887666653
No 166
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.21 E-value=4.4e-11 Score=107.46 Aligned_cols=114 Identities=25% Similarity=0.295 Sum_probs=71.7
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCC----cEEEEecchhhhhhhhhhHHHHHHHHHHH----HhCCCcEEEecCcccc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDA----CFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAI 273 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~----~~i~v~~~~l~~~~~g~~~~~v~~~f~~a----~~~~p~Il~iDEiD~l 273 (420)
-..++|+||+|||||.+|+++|..+.. +++.++++++... ++....+..++..+ ......||||||||++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 346899999999999999999999986 9999999998761 11112222222111 1112239999999998
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHhcCCc------CCCCeEEEEEeCCC
Q 014712 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNIKVLMATNRP 317 (420)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v~vI~ttn~~ 317 (420)
....+.........+++.|+++++.-.-.+ .-.++++|+|+|--
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 432000000001177888888887532111 23579999999954
No 167
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.21 E-value=5e-11 Score=106.76 Aligned_cols=123 Identities=24% Similarity=0.416 Sum_probs=82.7
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY---- 242 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~---- 242 (420)
|+|.+..++++++.+.... ..+.+|||+|++||||+++|+++.+.. +.+|+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 5688888888888887633 335789999999999999999999965 5799999998764332
Q ss_pred -hhhh-------HHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CCc----CCCCe
Q 014712 243 -VGEG-------ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----ARGNI 308 (420)
Q Consensus 243 -~g~~-------~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~----~~~~v 308 (420)
.|.. ......+|..|..+ +||||||+.| +...|..|+++|+.-. ... ..-++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 1110 00112455555544 9999999998 7889999999998632 111 12379
Q ss_pred EEEEEeCCC
Q 014712 309 KVLMATNRP 317 (420)
Q Consensus 309 ~vI~ttn~~ 317 (420)
.||++|+..
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 999999963
No 168
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.20 E-value=1.9e-10 Score=116.52 Aligned_cols=144 Identities=23% Similarity=0.362 Sum_probs=90.3
Q ss_pred cccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cE-----EEEec----
Q 014712 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CF-----IRVIG---- 235 (420)
Q Consensus 167 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~-----i~v~~---- 235 (420)
++++.+.+...+.+...+.. .++++|+||||||||++|+.+|..+.. .+ +.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~---------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI---------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc---------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 45566777777776655542 568999999999999999999998743 11 22211
Q ss_pred chhhhhhhhh--h----HHHHHHHHHHHHh--CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHh--------
Q 014712 236 SELVQKYVGE--G----ARMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL-------- 299 (420)
Q Consensus 236 ~~l~~~~~g~--~----~~~v~~~f~~a~~--~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l-------- 299 (420)
.+++..+... + ...+..+...|.. ..|++||||||++... ..+...+..+++.-
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccce
Confidence 1222222111 1 1122334455554 3579999999998532 22333444444310
Q ss_pred ---------cCCcCCCCeEEEEEeCCCC----CCCccccCcCcccEEEEccC
Q 014712 300 ---------DGFDARGNIKVLMATNRPD----TLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 300 ---------~~~~~~~~v~vI~ttn~~~----~ld~al~r~gRfd~~i~~~~ 338 (420)
..+....++.||+|+|..+ .+|.||+| || ..+++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 1244567899999999886 79999999 99 5566654
No 169
>PRK04132 replication factor C small subunit; Provisional
Probab=99.19 E-value=2.2e-10 Score=124.45 Aligned_cols=150 Identities=16% Similarity=0.196 Sum_probs=115.2
Q ss_pred CCCcceeeC--CCCChHHHHHHHHHHhc-----CCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhC------CCcEEEe
Q 014712 201 PPKGVLCYG--PPGTGKTLLARAVANRT-----DACFIRVIGSELVQKYVGEGARMVRELFQMARSK------KACIVFF 267 (420)
Q Consensus 201 ~~~~vLL~G--ppGtGKT~Lakala~~~-----~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~------~p~Il~i 267 (420)
|.-+-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..++.+...+... ...|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 344567789 99999999999999997 56799999987532 22445554433221 2369999
Q ss_pred cCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHH
Q 014712 268 DEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQI 347 (420)
Q Consensus 268 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~I 347 (420)
||+|.+ +...|+.|..++++ +.+++.+|++||.+..+.+++++ |+ ..+.|++|+.++-...
T Consensus 637 DEaD~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 637 DEADAL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred ECcccC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHH
Confidence 999998 56778888888875 35688999999999999999999 88 8899999999999888
Q ss_pred HHHHHhcCCCC-CCccHHHHHhhCCCCcc
Q 014712 348 FKIHTRTMNCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 348 l~~~~~~~~~~-~~v~l~~la~~t~g~sg 375 (420)
++..+.+.++. ++..+..++..+.|-.+
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEGDMR 726 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCCHH
Confidence 88888765543 33457788888887443
No 170
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.18 E-value=7.4e-11 Score=116.77 Aligned_cols=160 Identities=23% Similarity=0.282 Sum_probs=102.6
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-------CCcEE-------
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DACFI------- 231 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-------~~~~i------- 231 (420)
.|..|+|+++.+..|.-.+..| ...+++|.|+||+|||++++++++.+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4778999999999887655442 23579999999999999999999865 22221
Q ss_pred --EEecchh----------------hhhhhhhhH-HHHHHH-HHHH-------------HhCCCcEEEecCcccccCCcc
Q 014712 232 --RVIGSEL----------------VQKYVGEGA-RMVREL-FQMA-------------RSKKACIVFFDEVDAIGGARF 278 (420)
Q Consensus 232 --~v~~~~l----------------~~~~~g~~~-~~v~~~-f~~a-------------~~~~p~Il~iDEiD~l~~~r~ 278 (420)
-.+|... ...-.+.++ ..+..+ +..+ ......+|||||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L----- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL----- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC-----
Confidence 0000000 000000000 000000 0110 0122359999999997
Q ss_pred CCCCCCCHHHHHHHHHHHHHh------cCC--cCCCCeEEEEEeCCCC-CCCccccCcCcccEEEEccCCCH-HHHHHHH
Q 014712 279 DDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPDL-ESRTQIF 348 (420)
Q Consensus 279 ~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~ttn~~~-~ld~al~r~gRfd~~i~~~~Pd~-~~R~~Il 348 (420)
++..|..+++.+.+- +|. ....++++|+|+|..+ .++++++. ||...+.++.|+. ++|.+|+
T Consensus 144 ------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 144 ------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred ------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 678899999888652 111 1234677888887654 68899999 9999999999865 8888888
Q ss_pred HHH
Q 014712 349 KIH 351 (420)
Q Consensus 349 ~~~ 351 (420)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 874
No 171
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.15 E-value=3e-10 Score=112.52 Aligned_cols=149 Identities=23% Similarity=0.302 Sum_probs=98.1
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh---
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV--- 243 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~--- 243 (420)
++|.+..++.+.+.+.... ....+|||+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 4677888888888776632 345689999999999999999998754 57999999986532211
Q ss_pred --hhhH-------HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--C----cCCCCe
Q 014712 244 --GEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--F----DARGNI 308 (420)
Q Consensus 244 --g~~~-------~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~----~~~~~v 308 (420)
|... ......|..| ...+||||||+.+ +...|..++.+++.-.- . ....++
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HhccccccccCcccccCCchhhC---CCCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 1000 0001123333 3459999999998 78889999998875320 0 112467
Q ss_pred EEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHHH
Q 014712 309 KVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (420)
Q Consensus 309 ~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~ 346 (420)
.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~e 177 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQE 177 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhh
Confidence 899999863 223344544 552 45667777777755
No 172
>PRK08116 hypothetical protein; Validated
Probab=99.15 E-value=4.5e-10 Score=108.14 Aligned_cols=123 Identities=22% Similarity=0.289 Sum_probs=80.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhh----hHHHHHHHHHHHHhCCCcEEEecCccccc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE----GARMVRELFQMARSKKACIVFFDEVDAIG 274 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~----~~~~v~~~f~~a~~~~p~Il~iDEiD~l~ 274 (420)
+.+++|||++|||||+||.++|+++ +.+++.++.+++....... .......++... ....+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999999975 7888889988876654321 111112233322 334599999986531
Q ss_pred CCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC-CC----CCccccCcCcc---cEEEEccCCCH
Q 014712 275 GARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DT----LDPALLRPGRL---DRKVEFGLPDL 341 (420)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~-~~----ld~al~r~gRf---d~~i~~~~Pd~ 341 (420)
.+...+..+..+++... ..+..+|+|||.+ .. ++..+.+ |+ ...+.+.-||.
T Consensus 192 ---------~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 24566777888887642 2345688899875 22 4556665 53 34566666665
No 173
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.14 E-value=3e-10 Score=112.47 Aligned_cols=158 Identities=24% Similarity=0.302 Sum_probs=104.6
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~ 242 (420)
.+++++|.+..++.+.+.+.... ..+.+|+|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 35678999999999999887632 345689999999999999999998754 5799999998763211
Q ss_pred -----hhhhH-------HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC------
Q 014712 243 -----VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA------ 304 (420)
Q Consensus 243 -----~g~~~-------~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~------ 304 (420)
.|... ......|..+ ....|||||+|.+ +...|..+..+++.-. +..
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~-~~~~g~~~~ 137 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMLVQEKLLRVIEYGE-LERVGGSQP 137 (326)
T ss_pred HHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----------CHHHHHHHHHHHhcCc-EEeCCCCce
Confidence 11100 0001123322 3458999999998 6788999988886522 111
Q ss_pred -CCCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHHH----HHHHHH
Q 014712 305 -RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHT 352 (420)
Q Consensus 305 -~~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~----Il~~~~ 352 (420)
..++.||+||+.. ..+.+.|.. ||. .+.+..|...+|.+ ++..++
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl 194 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFA 194 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHH
Confidence 1258899988763 334455555 552 34555666666654 455544
No 174
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.14 E-value=2.1e-10 Score=121.14 Aligned_cols=184 Identities=20% Similarity=0.319 Sum_probs=114.4
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhh
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~ 239 (420)
+..++++++|.+..++.+.+.+.... ....+|||+|++||||+++|++++... +.+|+.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34678899999999999999887632 345689999999999999999999864 5799999998763
Q ss_pred hhhh-----hhhHHH-------HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC---
Q 014712 240 QKYV-----GEGARM-------VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA--- 304 (420)
Q Consensus 240 ~~~~-----g~~~~~-------v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~--- 304 (420)
.... |..... ....|.. ....+||||||+.+ +...|..++.++..-. +..
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~-~~~~~~ 324 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGE-FERVGG 324 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhC-----------CHHHHHHHHHHHhcCc-EEECCC
Confidence 3211 100000 0011222 23459999999998 6788999998887522 111
Q ss_pred ----CCCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHH----HHHHHHHhcC----CCCCCccHHH
Q 014712 305 ----RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRT----QIFKIHTRTM----NCERDIRFEL 365 (420)
Q Consensus 305 ----~~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~----~Il~~~~~~~----~~~~~v~l~~ 365 (420)
..++.+|++|+.. ..+.+.|.. |+. .+.+..|...+|. .+++.++..+ +....++-+.
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1257899998764 123333333 332 3444555555543 4555555432 2222344444
Q ss_pred HHhhC-CCCcc
Q 014712 366 LSRLC-PNSTG 375 (420)
Q Consensus 366 la~~t-~g~sg 375 (420)
+..+. ..|.|
T Consensus 402 ~~~L~~~~WPG 412 (534)
T TIGR01817 402 IRVLMSCKWPG 412 (534)
T ss_pred HHHHHhCCCCC
Confidence 54443 35565
No 175
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.14 E-value=7e-11 Score=108.04 Aligned_cols=46 Identities=33% Similarity=0.513 Sum_probs=37.2
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
.|++|.|++.+|..|.-+... +.++||+||||||||++|+.+..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999877754 3589999999999999999999853
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.14 E-value=4.7e-10 Score=114.58 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=94.3
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecch-hhhhhhhhh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSE-LVQKYVGEG 246 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~-l~~~~~g~~ 246 (420)
|.|.+++++.+..++. ...++||+||||||||++|++++..++. +|..+.+.- ......|..
T Consensus 22 i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 22 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred ccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 7788888887776664 3568999999999999999999997643 344333220 011111210
Q ss_pred -HHHH--HHHHHHHHhC---CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc----CCc-CCCCeEEEEEeC
Q 014712 247 -ARMV--RELFQMARSK---KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GFD-ARGNIKVLMATN 315 (420)
Q Consensus 247 -~~~v--~~~f~~a~~~---~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~~-~~~~v~vI~ttn 315 (420)
-... ...|.....+ ...+||+|||..+ ++..|..|++.+++-. +-. .-...++++|||
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 0000 1122221111 2349999999875 7889999999997633 110 011234555666
Q ss_pred CCC---CCCccccCcCcccEEEEccCCC-HHHHHHHHHHH
Q 014712 316 RPD---TLDPALLRPGRLDRKVEFGLPD-LESRTQIFKIH 351 (420)
Q Consensus 316 ~~~---~ld~al~r~gRfd~~i~~~~Pd-~~~R~~Il~~~ 351 (420)
... ...+++.. ||-..+.+++|+ .++...|+...
T Consensus 156 ~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 156 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 432 12347888 998899999997 45557777654
No 177
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.13 E-value=1.1e-09 Score=102.80 Aligned_cols=185 Identities=12% Similarity=0.192 Sum_probs=132.2
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-C--CcEEEE
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-D--ACFIRV 233 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-~--~~~i~v 233 (420)
.|++++.+.+++.+.+.++....++..... ..-.++++|||+|+||-|.+.++.+++ | ..-+.+
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki 68 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI 68 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee
Confidence 588899999999999999999998877752 112379999999999999999998875 2 111111
Q ss_pred ecchh------------------hh---hhhhhh-HHHHHHHHHHHHhC---------CCcEEEecCcccccCCccCCCC
Q 014712 234 IGSEL------------------VQ---KYVGEG-ARMVRELFQMARSK---------KACIVFFDEVDAIGGARFDDGV 282 (420)
Q Consensus 234 ~~~~l------------------~~---~~~g~~-~~~v~~~f~~a~~~---------~p~Il~iDEiD~l~~~r~~~~~ 282 (420)
....+ +. ...|.. .-.+.++++..... ...+++|.|+|.+
T Consensus 69 ~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L--------- 139 (351)
T KOG2035|consen 69 ETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL--------- 139 (351)
T ss_pred eeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh---------
Confidence 11100 00 011222 22344555543322 2359999999998
Q ss_pred CCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCc
Q 014712 283 GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDI 361 (420)
Q Consensus 283 ~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v 361 (420)
..+.|.++..-++.. .+++.+|+.+|..+.+-+++++ |+ ..+.++.|+.++...++...+.+.++. +..
T Consensus 140 --T~dAQ~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 140 --TRDAQHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred --hHHHHHHHHHHHHHH-----hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 677888888877765 4678899999999999999999 77 788999999999999999999776665 222
Q ss_pred cHHHHHhhCCCC
Q 014712 362 RFELLSRLCPNS 373 (420)
Q Consensus 362 ~l~~la~~t~g~ 373 (420)
-+..+|+.+.|-
T Consensus 210 ~l~rIa~kS~~n 221 (351)
T KOG2035|consen 210 LLKRIAEKSNRN 221 (351)
T ss_pred HHHHHHHHhccc
Confidence 356677766653
No 178
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.13 E-value=8.6e-10 Score=118.91 Aligned_cols=184 Identities=20% Similarity=0.315 Sum_probs=114.5
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~ 240 (420)
..+|++++|.+..++.+.+.+.... ....+|||+|++||||+++|+++.+.. +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 4578999999999999888887632 235579999999999999999999865 57999999987632
Q ss_pred h-----hhhhh----HHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCC--cC----C
Q 014712 241 K-----YVGEG----ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DA----R 305 (420)
Q Consensus 241 ~-----~~g~~----~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~--~~----~ 305 (420)
. ..|.. .......|.. ....+||||||+.+ +...|..|+.+++.-.-. .. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 1 11110 0000011222 23468999999998 788899999888642111 10 1
Q ss_pred CCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHHH----HHHHHHhcC----CCCCCccHHHHHhhC
Q 014712 306 GNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCERDIRFELLSRLC 370 (420)
Q Consensus 306 ~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~----Il~~~~~~~----~~~~~v~l~~la~~t 370 (420)
-++.+|+||+.. ..+.+.|.. |+ ..+.+..|...+|.+ +++.++..+ +....+.-+.+..+.
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYY--AL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhh--hh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 257899998864 122222322 33 256677787777753 445554332 212234445555443
Q ss_pred -CCCcc
Q 014712 371 -PNSTG 375 (420)
Q Consensus 371 -~g~sg 375 (420)
..|.|
T Consensus 533 ~y~WPG 538 (638)
T PRK11388 533 SYRWPG 538 (638)
T ss_pred cCCCCC
Confidence 35555
No 179
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.13 E-value=9.9e-10 Score=106.34 Aligned_cols=63 Identities=37% Similarity=0.591 Sum_probs=48.5
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchh
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSEL 238 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 238 (420)
+.++|+.++.+..-=.+.. .+-|--.++++|+.||||||||.||-++|+++| .||..++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~m--------ik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKM--------IKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHH--------HHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 4488998887765444433 222445688999999999999999999999985 68888887766
No 180
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=9.6e-10 Score=108.21 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=112.7
Q ss_pred cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-----------------------
Q 014712 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 229 (420)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~----------------------- 229 (420)
+....+.|...+.. -..+..+||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQ------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45566677766654 1345689999999999999999999965321
Q ss_pred -EEEEecchhhhhhhhhhHHHHHHHHHHH----HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 230 -FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 230 -~i~v~~~~l~~~~~g~~~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
+..+...+ ++. -+-..+|++.+.+ ..+...|++||++|.+ +.+.++.|+..|++ +
T Consensus 75 D~~~i~p~~--~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----P 134 (325)
T PRK06871 75 DFHILEPID--NKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----P 134 (325)
T ss_pred CEEEEcccc--CCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----C
Confidence 22221110 010 1233455544433 3345579999999998 56677777777764 6
Q ss_pred CCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccc
Q 014712 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHS 378 (420)
Q Consensus 305 ~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl 378 (420)
..++.+|.+|+.++.+.|.+++ |+ ..+.|++|+.++-.+.|..... . .......+++++.|-.+..+
T Consensus 135 p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~~~---~-~~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQSS---A-EISEILTALRINYGRPLLAL 201 (325)
T ss_pred CCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHHhc---c-ChHHHHHHHHHcCCCHHHHH
Confidence 7889999999999999999999 88 7889999999887777765431 1 12234556667777665333
No 181
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.13 E-value=1.9e-10 Score=116.95 Aligned_cols=182 Identities=23% Similarity=0.366 Sum_probs=121.5
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK 241 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~ 241 (420)
..+.+++|.+..++++++.+... ....-.|||+|++||||.++|+++.... +.||+.+||..+-..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 45667999999999999999762 2345689999999999999999999865 579999999765322
Q ss_pred h-----hh--------hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CCcC--
Q 014712 242 Y-----VG--------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA-- 304 (420)
Q Consensus 242 ~-----~g--------~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~~-- 304 (420)
. .| ...+. ...|+.|.. ..||||||..+ +.+.|..|+..|++-. .+..
T Consensus 207 l~ESELFGhekGAFTGA~~~r-~G~fE~A~G---GTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRR-IGRFEQANG---GTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHHhhcccccCcCCccccc-CcceeEcCC---ceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCc
Confidence 1 11 11111 124554444 49999999987 7889999999987632 1111
Q ss_pred --CCCeEEEEEeCCC--CCC-----CccccCcCcccEEEEccCCCHHHHHH----HHHHHHh----cCCCC-CCccHHHH
Q 014712 305 --RGNIKVLMATNRP--DTL-----DPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTR----TMNCE-RDIRFELL 366 (420)
Q Consensus 305 --~~~v~vI~ttn~~--~~l-----d~al~r~gRfd~~i~~~~Pd~~~R~~----Il~~~~~----~~~~~-~~v~l~~l 366 (420)
.-+|.||++||.. +.+ -+.|.- |+ .++.+..|...+|.+ ++.++++ ..+.. ..++-+.+
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~ 348 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEAL 348 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 2268999999974 222 222332 33 378888899988876 4444443 33332 34555666
Q ss_pred HhhC-CCCcc
Q 014712 367 SRLC-PNSTG 375 (420)
Q Consensus 367 a~~t-~g~sg 375 (420)
+.++ ..|.|
T Consensus 349 ~~L~~y~WPG 358 (464)
T COG2204 349 AALLAYDWPG 358 (464)
T ss_pred HHHHhCCCCh
Confidence 5553 35555
No 182
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.12 E-value=2.2e-10 Score=122.92 Aligned_cols=156 Identities=22% Similarity=0.302 Sum_probs=104.1
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-------------------
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------------------- 226 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~------------------- 226 (420)
.|.+|+|++.++..|.-....+ ...+|||+|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4678999999998887666542 12379999999999999999999877
Q ss_pred ----------------CCcEEEEecchhhhhhhhhh--HHHH--------HHHHHHHHhCCCcEEEecCcccccCCccCC
Q 014712 227 ----------------DACFIRVIGSELVQKYVGEG--ARMV--------RELFQMARSKKACIVFFDEVDAIGGARFDD 280 (420)
Q Consensus 227 ----------------~~~~i~v~~~~l~~~~~g~~--~~~v--------~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~ 280 (420)
..+|+.+.+.......+|.. ...+ ..++.. ....+||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhC-------
Confidence 23555544332222122210 0000 011111 12359999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhc------CC--cCCCCeEEEEEeCCC-CCCCccccCcCcccEEEEccCCC-HHHHHHHHHH
Q 014712 281 GVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-DTLDPALLRPGRLDRKVEFGLPD-LESRTQIFKI 350 (420)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~ttn~~-~~ld~al~r~gRfd~~i~~~~Pd-~~~R~~Il~~ 350 (420)
+...+..|+++++.-. +. ....++.+|+|+|.. ..+.++|+. ||+..+.++.|. .+++.++++.
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 6788999988887421 11 112468899998854 468889999 999999998764 5677777764
No 183
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.12 E-value=4.9e-10 Score=109.92 Aligned_cols=77 Identities=27% Similarity=0.341 Sum_probs=51.0
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC------------CCCCCccccCcCc
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 329 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~------------~~~ld~al~r~gR 329 (420)
|.||||||++.| +-+...-|...++. .-.-+||++||+ |+-+|..|+. |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs------~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALES------ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTS------TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcC------CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 679999999988 56666666555542 233468889984 4667778888 8
Q ss_pred ccEEEEccCCCHHHHHHHHHHHHhcCCCC
Q 014712 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCE 358 (420)
Q Consensus 330 fd~~i~~~~Pd~~~R~~Il~~~~~~~~~~ 358 (420)
+ .+|...+++.++-.+|++.+++..++.
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 7 788889999999999999999877665
No 184
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.11 E-value=6.4e-10 Score=99.11 Aligned_cols=134 Identities=25% Similarity=0.385 Sum_probs=90.9
Q ss_pred ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC-----------------------
Q 014712 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA----------------------- 228 (420)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~----------------------- 228 (420)
|++++++.|...+.. -+.|..+||+||+|+||+++|+++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788889999988875 144667999999999999999999996522
Q ss_pred cEEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 229 CFIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 229 ~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
.+..+....... .-.-..++.+...+. .....|++||++|.+ +.+.+++|+..|++ +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 223332221100 012244555554432 245669999999998 67888888888875 4
Q ss_pred CCCeEEEEEeCCCCCCCccccCcCcccEEEEccCC
Q 014712 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 339 (420)
Q Consensus 305 ~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~P 339 (420)
..++.+|++|+.++.+.|.+++ |+ ..+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 6789999999999999999999 88 66777653
No 185
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.9e-10 Score=108.39 Aligned_cols=85 Identities=28% Similarity=0.355 Sum_probs=60.4
Q ss_pred CcEEEecCcccccCCccCCC-CCCCHHHHHHHHHHHHHhc-----CCcCCCCeEEEEEe----CCCCCCCccccCcCccc
Q 014712 262 ACIVFFDEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQLD-----GFDARGNIKVLMAT----NRPDTLDPALLRPGRLD 331 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l~-----~~~~~~~v~vI~tt----n~~~~ld~al~r~gRfd 331 (420)
-.|+||||||.++.+...++ .-....+|+-++.++.--. |.-....+.+|++. ..|++|-|.|.. ||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 35999999999987654222 2234567777777664311 12234467788776 468888899976 999
Q ss_pred EEEEccCCCHHHHHHHH
Q 014712 332 RKVEFGLPDLESRTQIF 348 (420)
Q Consensus 332 ~~i~~~~Pd~~~R~~Il 348 (420)
-.+++...+.++-..||
T Consensus 329 IRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 329 IRVELDALTKEDFERIL 345 (444)
T ss_pred eEEEcccCCHHHHHHHH
Confidence 99999999998887766
No 186
>PRK12377 putative replication protein; Provisional
Probab=99.11 E-value=7.8e-10 Score=105.00 Aligned_cols=101 Identities=23% Similarity=0.245 Sum_probs=69.4
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhhH--HHHHHHHHHHHhCCCcEEEecCcccccCC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGA--RMVRELFQMARSKKACIVFFDEVDAIGGA 276 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~~--~~v~~~f~~a~~~~p~Il~iDEiD~l~~~ 276 (420)
..+++|+||||||||+||.++|+.+ +..++.++..++......... .....++.. .....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCCC--
Confidence 3589999999999999999999976 677788888877664322110 011122322 2456799999997652
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+...+..+.++++.-. .....+|+|||..
T Consensus 177 -------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 177 -------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred -------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 24556778888887643 3345688999964
No 187
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.2e-10 Score=107.41 Aligned_cols=122 Identities=27% Similarity=0.415 Sum_probs=85.5
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCC--------CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh-
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGID--------PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ- 240 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~--------~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~- 240 (420)
++|++.+++.|.=++-. .|.++... ...++||.||+|||||+||+.+|+.++.||...++..+..
T Consensus 63 VIGQe~AKKvLsVAVYN------HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 63 VIGQEQAKKVLSVAVYN------HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred eecchhhhceeeeeehh------HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 88999998877655433 12222211 1246999999999999999999999999999999988865
Q ss_pred hhhhhh-HHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCC---CCCCHHHHHHHHHHHH
Q 014712 241 KYVGEG-ARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDG---VGGDNEVQRTMLEIVN 297 (420)
Q Consensus 241 ~~~g~~-~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~---~~~~~~~~~~l~~ll~ 297 (420)
.|+|+- +..+-.+++.|. .....||+|||||.+..+..+++ .-....+|++|+.+++
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiE 201 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIE 201 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHc
Confidence 477774 444555555432 12345999999999986653332 1234667888887775
No 188
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5e-10 Score=121.13 Aligned_cols=127 Identities=28% Similarity=0.449 Sum_probs=98.0
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCC---CCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh--
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-- 240 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi---~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~-- 240 (420)
.|+|+++++..|.++|... +.|. ++.-.++|.||.|+|||-||+++|..+ .-.+++++++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 3899999999999999873 2233 355678999999999999999999976 56799999997544
Q ss_pred h-------hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC------CC
Q 014712 241 K-------YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR------GN 307 (420)
Q Consensus 241 ~-------~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~------~~ 307 (420)
+ |+|.. ....+....+....+||+|||||.- +..++..|+++++...-.+.. .|
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 1 22222 2345667777788899999999985 889999999999875433333 47
Q ss_pred eEEEEEeCC
Q 014712 308 IKVLMATNR 316 (420)
Q Consensus 308 v~vI~ttn~ 316 (420)
++||+|+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 999999884
No 189
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.10 E-value=1.6e-10 Score=120.75 Aligned_cols=162 Identities=23% Similarity=0.364 Sum_probs=107.1
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHh-----------cCCcEEEE
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR-----------TDACFIRV 233 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~-----------~~~~~i~v 233 (420)
.+|++++|.+..++.+++.+.... ....+|||+|++||||+++|+++.+. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 468889999999999999887532 23568999999999999999999887 46799999
Q ss_pred ecchhhhhhh-----hhhH--------HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc
Q 014712 234 IGSELVQKYV-----GEGA--------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (420)
Q Consensus 234 ~~~~l~~~~~-----g~~~--------~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (420)
+|..+..... |... ..-..+|+.|. ...||||||+.+ +...|..|+.++++-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 9987643211 1000 00112344433 348999999998 7888999999887532
Q ss_pred C--Cc----CCCCeEEEEEeCCC--CCCC-----ccccCcCcccEEEEccCCCHHHHHH----HHHHHHhc
Q 014712 301 G--FD----ARGNIKVLMATNRP--DTLD-----PALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRT 354 (420)
Q Consensus 301 ~--~~----~~~~v~vI~ttn~~--~~ld-----~al~r~gRfd~~i~~~~Pd~~~R~~----Il~~~~~~ 354 (420)
- .. -..++.+|++||.. ..+. +.|.. |+ ..+.+..|...+|.+ ++..++++
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL-~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RL-SILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hh-cCCeecCCChhhchhHHHHHHHHHHHH
Confidence 1 11 12357899999864 1111 22222 22 246677777777764 45555543
No 190
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.3e-09 Score=108.82 Aligned_cols=189 Identities=18% Similarity=0.201 Sum_probs=129.5
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEEecchhhhh-
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQK- 241 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v~~~~l~~~- 241 (420)
..+.|.+.....+++++..++.. +.+.++++.|.||||||.+..-+.... ....++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45899999999999999875443 678899999999999999998776644 224578888754221
Q ss_pred ---------h----hhhh-HHHHHHHHH-HHHhC-CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC
Q 014712 242 ---------Y----VGEG-ARMVRELFQ-MARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (420)
Q Consensus 242 ---------~----~g~~-~~~v~~~f~-~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (420)
+ .+.+ .......|. ..... .+-++++||+|.|+... +.+++.++.+-. .+.
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFewp~--lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEWPK--LPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhccc--CCc
Confidence 1 1111 112222332 22222 36799999999997432 345555554321 245
Q ss_pred CCeEEEEEeCCCCCCCccccC----cCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCC--ccHHHHHhhCCCCcccccc
Q 014712 306 GNIKVLMATNRPDTLDPALLR----PGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD--IRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 306 ~~v~vI~ttn~~~~ld~al~r----~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~--v~l~~la~~t~g~sgadl~ 379 (420)
.++++|+.+|..+.-|..|.+ .+.-...+.|++++.++..+||+..+........ ..++..|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 678899999988766644432 2334568999999999999999999977665533 447788999999988 555
No 191
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.09 E-value=8.2e-10 Score=116.04 Aligned_cols=157 Identities=22% Similarity=0.347 Sum_probs=104.9
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l 238 (420)
....+|++++|.+..++.+.+.+.... .....|||+|++||||+++|+++.... ..+|+.++|..+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 456799999999999888888776422 234579999999999999999997754 479999999876
Q ss_pred hhhhh-----hhhH-------HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CCc-
Q 014712 239 VQKYV-----GEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD- 303 (420)
Q Consensus 239 ~~~~~-----g~~~-------~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~- 303 (420)
-.... |... .....+|..|. ...||||||+.+ +...|..+..+++.-. ...
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCC
Confidence 43211 1100 00012344332 358999999998 6888999999887521 111
Q ss_pred ---CCCCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHHH
Q 014712 304 ---ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (420)
Q Consensus 304 ---~~~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~ 346 (420)
...++.||+||+.+ ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~ 382 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQ 382 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChh
Confidence 12357899988764 223344544 542 46677777777663
No 192
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.08 E-value=8.6e-10 Score=115.71 Aligned_cols=153 Identities=22% Similarity=0.365 Sum_probs=103.6
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~ 242 (420)
.+.+++|.+..++.+.+.+.... ..+.+|||+|++||||+++|+++.... +.+|+.++|..+-...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 67789999999999999887632 346689999999999999999999864 5799999998764321
Q ss_pred h-----hhhH-------HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--Cc----C
Q 014712 243 V-----GEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD----A 304 (420)
Q Consensus 243 ~-----g~~~-------~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~----~ 304 (420)
. |... ......|..| ....|||||||.+ +...|..+..+++.-.- .. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 1 1000 0001123333 3458999999998 68889999888865221 00 1
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHHH
Q 014712 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (420)
Q Consensus 305 ~~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~ 346 (420)
..++.+|++|+.. ..+.+.|.. |+ ..+.+..|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl-~~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RL-SVFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--cc-cccEeeCCCchhchh
Confidence 2367899999864 123334433 33 245677777777764
No 193
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.5e-09 Score=107.59 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=112.9
Q ss_pred cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-----------------------
Q 014712 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 229 (420)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~----------------------- 229 (420)
+....+++...+.. -..+..+||+||+|+||+++|.++|..+-+.
T Consensus 7 l~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (334)
T PRK07993 7 LRPDYEQLVGSYQA------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_pred ChHHHHHHHHHHHc------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 34556666666543 1346689999999999999999999975321
Q ss_pred -EEEEecchh-hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCC
Q 014712 230 -FIRVIGSEL-VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (420)
Q Consensus 230 -~i~v~~~~l-~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (420)
+..+....- ....+.+.......+......+...|++||++|.+ +.+.++.|+..|++ +..+
T Consensus 75 D~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~ 138 (334)
T PRK07993 75 DYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----PPEN 138 (334)
T ss_pred CEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----CCCC
Confidence 222211100 00112222222333333334456679999999998 56677777777764 6788
Q ss_pred eEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 308 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 308 v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
+++|.+|+.++.|.|.+++ |+ ..+.|++|+.++..+.|... .+.+. .....+++++.|-.+..+.
T Consensus 139 t~fiL~t~~~~~lLpTIrS--RC-q~~~~~~~~~~~~~~~L~~~---~~~~~-~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 139 TWFFLACREPARLLATLRS--RC-RLHYLAPPPEQYALTWLSRE---VTMSQ-DALLAALRLSAGAPGAALA 203 (334)
T ss_pred eEEEEEECChhhChHHHHh--cc-ccccCCCCCHHHHHHHHHHc---cCCCH-HHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999 88 57899999988776666532 23322 2245677888887765444
No 194
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.7e-09 Score=107.18 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=103.8
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcE-------------------------EEEecchhh---------------
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACF-------------------------IRVIGSELV--------------- 239 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~-------------------------i~v~~~~l~--------------- 239 (420)
..|..+||+||+|+||+++|+++|+.+.+.. ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4567899999999999999999998764321 111110000
Q ss_pred ---hh----h-hhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCC
Q 014712 240 ---QK----Y-VGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (420)
Q Consensus 240 ---~~----~-~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (420)
++ . ..-+-..+|.+...+. .+...|++||++|.+ +.+..+.|+..|+ .+..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE-----EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE-----EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc-----CCCcC
Confidence 00 0 0011234555544432 244569999999998 5666777776666 36788
Q ss_pred eEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 308 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 308 v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
+++|++|++++.|.|.+++ |+ ..+.|++|+.++..+.|... +... ...++.++.|-.+..+.
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~----~~~~---~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ----GVAD---ADALLAEAGGAPLAALA 224 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc----CCCh---HHHHHHHcCCCHHHHHH
Confidence 9999999999999999999 88 89999999999888877654 2221 23456677776664443
No 195
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.07 E-value=5.8e-11 Score=100.14 Aligned_cols=107 Identities=28% Similarity=0.405 Sum_probs=62.0
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEecc-hhhhh-hhhh----hHH-----HHHHHHHHHHhCCCcEEEecCccc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELVQK-YVGE----GAR-----MVRELFQMARSKKACIVFFDEVDA 272 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~-~l~~~-~~g~----~~~-----~v~~~f~~a~~~~p~Il~iDEiD~ 272 (420)
++||+|+||+|||++|+++|+.++..|.+|.+. ++.-. ..|. ... .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999999874 33211 1111 000 000111 14999999988
Q ss_pred ccCCccCCCCCCCHHHHHHHHHHHHHhc----C--CcCCCCeEEEEEeCCCC-----CCCccccCcCcc
Q 014712 273 IGGARFDDGVGGDNEVQRTMLEIVNQLD----G--FDARGNIKVLMATNRPD-----TLDPALLRPGRL 330 (420)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~--~~~~~~v~vI~ttn~~~-----~ld~al~r~gRf 330 (420)
. .+.+|.++++.+.+-. + +.-...+.||+|-|..+ .|+.+++. ||
T Consensus 74 a-----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A-----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C-----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 5 7889999999998743 1 22245688999999765 56777777 66
No 196
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.07 E-value=3.1e-10 Score=108.45 Aligned_cols=168 Identities=20% Similarity=0.225 Sum_probs=116.7
Q ss_pred CcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcE-
Q 014712 152 PSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF- 230 (420)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~- 230 (420)
+.-...|++.+++...+++++.++.+..+.++... ..-.+.|+|||||||||+...+.|..+-.+.
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCC
Confidence 34456689999999999999999999999888543 1222899999999999999999999875531
Q ss_pred -----EEEecchhhhhhhhhhHHHHHHHHHHHHh-------CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHH
Q 014712 231 -----IRVIGSELVQKYVGEGARMVRELFQMARS-------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (420)
Q Consensus 231 -----i~v~~~~l~~~~~g~~~~~v~~~f~~a~~-------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (420)
...+.++-.+. ...+..-..|..++. ..+..+++||.|++ ..+.|.++.+.+..
T Consensus 92 ~~~m~lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek 157 (360)
T KOG0990|consen 92 TTSMLLELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEK 157 (360)
T ss_pred chhHHHHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHH
Confidence 11111111000 011122234554442 36679999999998 56778888886655
Q ss_pred hcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 299 l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
+ ..++.++..+|.+..+.|++++ || ..+.|.+.+...-...+.+++..
T Consensus 158 ~-----t~n~rF~ii~n~~~ki~pa~qs--Rc-trfrf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 158 Y-----TANTRFATISNPPQKIHPAQQS--RC-TRFRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred h-----ccceEEEEeccChhhcCchhhc--cc-ccCCCCCCChhhhhhHHHHHHhc
Confidence 4 4677788899999999999998 77 45566666665555555555543
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.06 E-value=2.3e-09 Score=106.00 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=49.4
Q ss_pred ccc-cccccHHHHHHHHHhhhcccCChhhhhhcCCC-CCCcceeeCCCCChHHHHHHHHHHhcCC-------cEEEEec
Q 014712 166 TYN-DVGGCKEQIEKMREVVELPMLHPEKFVKLGID-PPKGVLCYGPPGTGKTLLARAVANRTDA-------CFIRVIG 235 (420)
Q Consensus 166 ~~~-~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~-~~~~vLL~GppGtGKT~Lakala~~~~~-------~~i~v~~ 235 (420)
-|+ ++.|+++.+.++.+++..... |.. ..+.++|+||||||||+||+++++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 345 799999999999998876332 222 3467899999999999999999998865 7777766
No 198
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.06 E-value=2.7e-10 Score=119.20 Aligned_cols=165 Identities=22% Similarity=0.339 Sum_probs=107.1
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~ 240 (420)
..+|++++|.+..++.+++.+.... ....+|||+|++||||+++|+++.+.. +.+|+.++|..+-.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 3678899999999999999887532 235689999999999999999999754 67999999986643
Q ss_pred hhh-----hhhH--------HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--CcC-
Q 014712 241 KYV-----GEGA--------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FDA- 304 (420)
Q Consensus 241 ~~~-----g~~~--------~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~~- 304 (420)
... |... ..-..+|+.|. ...||||||+.+ +...|..|+.+++.-.- +..
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCC
Confidence 211 1000 00112344332 348999999998 78889999998875321 111
Q ss_pred ---CCCeEEEEEeCCC--CCCCccccCcC---cccEEEEccCCCHHHHHH----HHHHHHhc
Q 014712 305 ---RGNIKVLMATNRP--DTLDPALLRPG---RLDRKVEFGLPDLESRTQ----IFKIHTRT 354 (420)
Q Consensus 305 ---~~~v~vI~ttn~~--~~ld~al~r~g---Rfd~~i~~~~Pd~~~R~~----Il~~~~~~ 354 (420)
..++.+|++|+.. +.+....+++. |+ ..+.+..|...+|.+ ++..++..
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 1246899998864 22222222211 33 135666677777654 44555543
No 199
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=3.1e-09 Score=104.44 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=114.1
Q ss_pred cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---------------------EE
Q 014712 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------------------FI 231 (420)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~---------------------~i 231 (420)
+...++.+...+.. -.-|..+||+||+|+||+++|.++|+.+-+. +.
T Consensus 9 ~~~~~~~l~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDA------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 45666777776654 1345679999999999999999999865321 11
Q ss_pred EEe-cchhhh-h-hhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 232 RVI-GSELVQ-K-YVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 232 ~v~-~~~l~~-~-~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
.+. .++-.+ + ...-+-..+|++.+.+.. +...|++||++|.+ +...++.|+..|++ +
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 140 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----P 140 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----C
Confidence 111 000000 0 000123345555554432 34469999999998 56677777777764 5
Q ss_pred CCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 305 ~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
..++.+|.+|+.++.|.|.+++ |+ ..+.|+.|+.++-.+.|... +.+ ..+...++.++.|..+..+.
T Consensus 141 p~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 141 SPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHHH
Confidence 6788899999999999999999 88 78899999988766666532 332 22344678888888775554
No 200
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.06 E-value=2.5e-09 Score=116.16 Aligned_cols=160 Identities=26% Similarity=0.427 Sum_probs=106.9
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~ 240 (420)
+..|++++|.+..++.+.+.+.... ....+|||+|++|||||++|++++... +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 3578899999999999988887632 235689999999999999999998854 67999999986532
Q ss_pred hh-----hhh--------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CC---
Q 014712 241 KY-----VGE--------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF--- 302 (420)
Q Consensus 241 ~~-----~g~--------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~--- 302 (420)
.. .|. .... ...|..+ ...+||||||+.+ +...|..+..+++.-. ..
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~-~g~le~a---~~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQR-IGRFELA---DKSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hHhhhhhcCcccccccccccch-hhHHHhc---CCCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCC
Confidence 21 111 1111 1233333 3459999999998 6888999998887532 00
Q ss_pred -cCCCCeEEEEEeCCC--C-----CCCccccCcCcccEEEEccCCCHHHHHH----HHHHHH
Q 014712 303 -DARGNIKVLMATNRP--D-----TLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHT 352 (420)
Q Consensus 303 -~~~~~v~vI~ttn~~--~-----~ld~al~r~gRfd~~i~~~~Pd~~~R~~----Il~~~~ 352 (420)
....++.+|++|+.. . .+.+.|.. |+ ..+.+..|...+|.+ +++.++
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l 564 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPEDIPLLVKAFT 564 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHhHHHHHHHHHH
Confidence 012467899999864 1 12222332 33 256677788877765 445444
No 201
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=3.8e-10 Score=112.82 Aligned_cols=168 Identities=23% Similarity=0.349 Sum_probs=111.8
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHh----cCCcEEEEecchhh
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIGSELV 239 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~----~~~~~i~v~~~~l~ 239 (420)
...+.+++|.+...+++++.+... .+...+||++|++||||+++|++++.. .+.||+.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 446778999999999999988761 134568999999999999999999753 46799999998775
Q ss_pred hhhhhh------------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc-----CC
Q 014712 240 QKYVGE------------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GF 302 (420)
Q Consensus 240 ~~~~g~------------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-----~~ 302 (420)
...... ....-..+|+.|..+ +||+|||..+ ..+.|..++.+++... +-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCC
Confidence 432211 111122455555444 9999999998 7889999999998732 11
Q ss_pred -cCCCCeEEEEEeCCC--CCCCc--cccCcCcccEEEEccCCCHHHHHH--------HHHHHHhcCCCCC
Q 014712 303 -DARGNIKVLMATNRP--DTLDP--ALLRPGRLDRKVEFGLPDLESRTQ--------IFKIHTRTMNCER 359 (420)
Q Consensus 303 -~~~~~v~vI~ttn~~--~~ld~--al~r~gRfd~~i~~~~Pd~~~R~~--------Il~~~~~~~~~~~ 359 (420)
....+|.+|++|+.. +.+-. .+.+ |. ..+.+..|...+|.. .++.++++++...
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~--rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~ 275 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTR--RL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPL 275 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhh--hh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCC
Confidence 123478899998852 22222 4443 22 244556677776654 3344445555553
No 202
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=6e-09 Score=102.31 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=112.8
Q ss_pred cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC-----------------------c
Q 014712 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-----------------------C 229 (420)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~-----------------------~ 229 (420)
+....+.+...+.. -..+..+||+||.|+||+++|+++|..+-+ .
T Consensus 8 l~~~~~~l~~~~~~------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDA------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 45666777776654 134668999999999999999999986522 1
Q ss_pred EEEEecchhhhhhhhhhHHHHHHHHHHH----HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC
Q 014712 230 FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (420)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (420)
+..+.... .++. -+-..+|.+...+ ..+...|++||++|.+ +...++.++..|++ +.
T Consensus 76 ~~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp 136 (319)
T PRK06090 76 LHVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----PA 136 (319)
T ss_pred EEEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----CC
Confidence 22222110 0000 1223445544333 2344569999999998 56667777777764 57
Q ss_pred CCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 306 ~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
.++.+|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+... +.. ....+++++.|-.+..+.
T Consensus 137 ~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~~----~~~---~~~~~l~l~~G~p~~A~~ 200 (319)
T PRK06090 137 PNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKGQ----GIT---VPAYALKLNMGSPLKTLA 200 (319)
T ss_pred CCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHHc----CCc---hHHHHHHHcCCCHHHHHH
Confidence 789999999999999999999 88 78999999988777766532 222 234667788887765554
No 203
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.01 E-value=1.1e-09 Score=110.45 Aligned_cols=155 Identities=23% Similarity=0.385 Sum_probs=105.8
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~ 240 (420)
...+..|+|.+.++.++.+.|+... +....|||.|.+||||..+||++.... ..||+.+||..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 4567789999999999999988632 345689999999999999999999865 68999999976543
Q ss_pred hhh---------hhhHHH---HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CCcCC-
Q 014712 241 KYV---------GEGARM---VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDAR- 305 (420)
Q Consensus 241 ~~~---------g~~~~~---v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~~~- 305 (420)
... |..... -+..|+.|.. ..||+|||..| +.+.|..++..|++-+ .+...
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCc
Confidence 221 111000 1123444433 48999999887 6889999999887632 22111
Q ss_pred ---CCeEEEEEeCCCCCCCccccCcCcc-----c--EEEEccCCCHHHHHH
Q 014712 306 ---GNIKVLMATNRPDTLDPALLRPGRL-----D--RKVEFGLPDLESRTQ 346 (420)
Q Consensus 306 ---~~v~vI~ttn~~~~ld~al~r~gRf-----d--~~i~~~~Pd~~~R~~ 346 (420)
-.|.||++||+- |..++. .|+| . -++.+..|...+|.+
T Consensus 354 ~ikVDVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~ 401 (550)
T COG3604 354 TIKVDVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPE 401 (550)
T ss_pred eeEEEEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCc
Confidence 258999999973 222221 1333 1 266777788877765
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.00 E-value=4.1e-09 Score=99.84 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=69.4
Q ss_pred CcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhh---HHHHHHHHHHHHhCCCcEEEecCcccccCC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG---ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~---~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~ 276 (420)
.+++|+|+||||||+|+.++|+++ +..++.++..++........ ......++... ...++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCC--
Confidence 489999999999999999999987 77888888888776443221 11122333332 356799999998863
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+......+.++++.-. ..+..+|+|||..
T Consensus 176 -------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 176 -------ESRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred -------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 13444567778887532 3356789999964
No 205
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.00 E-value=1.1e-09 Score=113.87 Aligned_cols=148 Identities=23% Similarity=0.311 Sum_probs=94.0
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC----------------
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---------------- 227 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~---------------- 227 (420)
...|+++.|+..+++.+.-.+. ...+++|+||||||||++|++++..+.
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 3488999999988776664442 346799999999999999999987431
Q ss_pred ------------CcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHH
Q 014712 228 ------------ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (420)
Q Consensus 228 ------------~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (420)
.||....++......+|.+...-...+..| ...+|||||++.+ +...+..|.+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~-----------~~~~~~~L~~~ 318 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF-----------KRSVLDALREP 318 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC-----------CHHHHHHHHHH
Confidence 111111111111111111111111123332 2359999999987 67888888888
Q ss_pred HHHhc----C----CcCCCCeEEEEEeCCC-----C------------------CCCccccCcCcccEEEEccCCCHH
Q 014712 296 VNQLD----G----FDARGNIKVLMATNRP-----D------------------TLDPALLRPGRLDRKVEFGLPDLE 342 (420)
Q Consensus 296 l~~l~----~----~~~~~~v~vI~ttn~~-----~------------------~ld~al~r~gRfd~~i~~~~Pd~~ 342 (420)
|+.-. . .....++.+|+++|.. . .+...|+. |||..+.++.++..
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 86421 0 1113478999999852 1 36777888 99999999977543
No 206
>PRK08181 transposase; Validated
Probab=99.00 E-value=2.7e-09 Score=102.51 Aligned_cols=101 Identities=21% Similarity=0.318 Sum_probs=70.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhh-HHHHHHHHHHHHhCCCcEEEecCcccccCC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~-~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~ 276 (420)
...+++|+||||||||+||.++++++ |..+++++..++........ .......+.. ...+.+|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEeccccccC-
Confidence 35679999999999999999999754 77788888888876543221 1112223332 23567999999987632
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
+...+..++++++...+ +..+|+|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~-----~~s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE-----RRSILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh-----CCCEEEEcCCC
Confidence 45667888999986532 23588899975
No 207
>PRK06526 transposase; Provisional
Probab=98.95 E-value=3.2e-09 Score=101.38 Aligned_cols=101 Identities=22% Similarity=0.323 Sum_probs=67.5
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhh-HHHHHHHHHHHHhCCCcEEEecCcccccCC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~-~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~ 276 (420)
.+.+++|+||||||||+||.+++.++ |..+..++..+++....... .......+.. ...+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~-- 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP-- 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC--
Confidence 45689999999999999999998864 66666666766655432111 1111222222 2456799999998863
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+...+..+.++++.... +..+|+|||.+
T Consensus 173 -------~~~~~~~~L~~li~~r~~-----~~s~IitSn~~ 201 (254)
T PRK06526 173 -------FEPEAANLFFQLVSSRYE-----RASLIVTSNKP 201 (254)
T ss_pred -------CCHHHHHHHHHHHHHHHh-----cCCEEEEcCCC
Confidence 246667788888876431 12488899976
No 208
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.94 E-value=2.1e-09 Score=112.61 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=87.7
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCc-EEEE---ecchhhhhhhhh---hHHHH-HHHHHHHHhCCCcEEEecCccccc
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDAC-FIRV---IGSELVQKYVGE---GARMV-RELFQMARSKKACIVFFDEVDAIG 274 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~-~i~v---~~~~l~~~~~g~---~~~~v-~~~f~~a~~~~p~Il~iDEiD~l~ 274 (420)
.++||+|+||||||++|+++++.+... |... ++..+......+ ++..+ ...+.. ....+++|||++.+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l- 312 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVL---ADNGVCCIDEFDKM- 312 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEe---cCCCEEEEechhhC-
Confidence 479999999999999999999976533 2211 111121100000 00000 001111 23459999999998
Q ss_pred CCccCCCCCCCHHHHHHHHHHHHHhc------CC--cCCCCeEEEEEeCCCC-------------CCCccccCcCcccEE
Q 014712 275 GARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDRK 333 (420)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~gRfd~~ 333 (420)
+...+..+.+.+++-. |. .-..++.||+|+|... .|++++++ |||..
T Consensus 313 ----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi 380 (509)
T smart00350 313 ----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLL 380 (509)
T ss_pred ----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeE
Confidence 6778888888886421 11 1134688999999752 58999999 99986
Q ss_pred EEc-cCCCHHHHHHHHHHHHh
Q 014712 334 VEF-GLPDLESRTQIFKIHTR 353 (420)
Q Consensus 334 i~~-~~Pd~~~R~~Il~~~~~ 353 (420)
+.+ ..|+.+...+|.++.+.
T Consensus 381 ~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 381 FVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEecCCCChHHHHHHHHHHHH
Confidence 555 78999999999887653
No 209
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.94 E-value=2e-09 Score=93.21 Aligned_cols=107 Identities=28% Similarity=0.501 Sum_probs=75.9
Q ss_pred cccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC---CcEEEEecchhhhhhhhhhH
Q 014712 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQKYVGEGA 247 (420)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l~~~~~g~~~ 247 (420)
+|.+..++++++.+.... .....|+|+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 477788888888876632 2356799999999999999999999764 356666655432
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 248 ~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.++++.+ ....|||+|+|.+ +.+.|..+.+++.... ..++.+|+++..+
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQD 110 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-
T ss_pred ---HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCC
Confidence 3344444 5569999999998 7888999999988743 4567888888753
No 210
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.93 E-value=1.4e-08 Score=105.90 Aligned_cols=178 Identities=13% Similarity=0.211 Sum_probs=108.2
Q ss_pred cccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEe
Q 014712 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 234 (420)
...|++++.+.+.+++.-..+-+++++.|+...+ .+..+.+-+||+||+|||||++++++|++++..+..-.
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 4679999999999999999999999999998622 12334556889999999999999999999987766532
Q ss_pred -cchhh------hhhhhhh---------HHHHHHH-HHHHHh-----------CCCcEEEecCcccccCCccCCCCCCCH
Q 014712 235 -GSELV------QKYVGEG---------ARMVREL-FQMARS-----------KKACIVFFDEVDAIGGARFDDGVGGDN 286 (420)
Q Consensus 235 -~~~l~------~~~~g~~---------~~~v~~~-f~~a~~-----------~~p~Il~iDEiD~l~~~r~~~~~~~~~ 286 (420)
...+. ..+.+.. ......+ +..++. ..+.||+|+|+=.++.. ...
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-------~~~ 150 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-------DTS 150 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch-------hHH
Confidence 22210 0111110 0011111 111111 24679999998765432 123
Q ss_pred HHHHHHHHHHHHhcCCcCCC-CeEEEEE-eC------CC--------CCCCccccCcCcccEEEEccCCCHHHHHHHHHH
Q 014712 287 EVQRTMLEIVNQLDGFDARG-NIKVLMA-TN------RP--------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (420)
Q Consensus 287 ~~~~~l~~ll~~l~~~~~~~-~v~vI~t-tn------~~--------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~ 350 (420)
.....|.+++.. ... .+++|+| +. .. ..+++.++...++ ..|.|.+-...-....|+.
T Consensus 151 ~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 151 RFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHH
Confidence 444444455442 122 5666666 11 11 1456666654445 6788987777666555555
Q ss_pred HHh
Q 014712 351 HTR 353 (420)
Q Consensus 351 ~~~ 353 (420)
.+.
T Consensus 225 I~~ 227 (519)
T PF03215_consen 225 ILK 227 (519)
T ss_pred HHH
Confidence 553
No 211
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.92 E-value=8.6e-09 Score=101.88 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=69.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhh---hHHHHHHHHHHHHhCCCcEEEecCcccccC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE---GARMVRELFQMARSKKACIVFFDEVDAIGG 275 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~---~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~ 275 (420)
..+++||||+||||||||.++|+++ +..+++++..++....... ........+.. .....+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCCC-
Confidence 3789999999999999999999976 7788888888876654221 00111111222 2345699999997753
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.++..+..++++++..- ..+..+|+|||.+
T Consensus 260 --------~t~~~~~~Lf~iin~R~----~~~k~tIiTSNl~ 289 (329)
T PRK06835 260 --------ITEFSKSELFNLINKRL----LRQKKMIISTNLS 289 (329)
T ss_pred --------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCC
Confidence 35667788888888743 2234588899864
No 212
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.8e-09 Score=104.51 Aligned_cols=143 Identities=20% Similarity=0.306 Sum_probs=94.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh-hhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY-VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFD 279 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~-~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~ 279 (420)
+-.++||+||||+|||.||..+|...+.||+.+-.++-+-.+ -...-..+..+|..|++..-+||++|+|+.|..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD---- 612 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD---- 612 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc----
Confidence 345799999999999999999999999999998766543332 223345688999999999999999999999853
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcCCC-CeEEEEEeCCCCCCC-ccccCcCcccEEEEccCCCH-HHHHHHHH
Q 014712 280 DGVGGDNEVQRTMLEIVNQLDGFDARG-NIKVLMATNRPDTLD-PALLRPGRLDRKVEFGLPDL-ESRTQIFK 349 (420)
Q Consensus 280 ~~~~~~~~~~~~l~~ll~~l~~~~~~~-~v~vI~ttn~~~~ld-~al~r~gRfd~~i~~~~Pd~-~~R~~Il~ 349 (420)
....+.+....++..|+-.+..-.+.+ +..|++||.+...|. -.++. .|+..+.+|..+. ++-.+++.
T Consensus 613 ~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 613 YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 122233333333333444444434444 455666666543332 13444 7888999887655 44444443
No 213
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.92 E-value=2e-08 Score=107.03 Aligned_cols=54 Identities=30% Similarity=0.474 Sum_probs=46.0
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
..|..-+++++|+++.+..++.++.. +.+++|+||||||||++++++++.++..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35566788899999999999988864 2489999999999999999999988654
No 214
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.1e-08 Score=101.27 Aligned_cols=95 Identities=36% Similarity=0.482 Sum_probs=71.8
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh-hhhh-hHHHHHHHHHHHH----hCCCcEEEecCcccccCC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGE-GARMVRELFQMAR----SKKACIVFFDEVDAIGGA 276 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~-~~g~-~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~ 276 (420)
.+|||.||+|+|||+||+.+|+-++.||...+|..+.+. |+|+ -+..+..++..|. ..+-.|+||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 369999999999999999999999999999999998764 7777 3455666666542 234469999999999843
Q ss_pred ccCC---CCCCCHHHHHHHHHHHH
Q 014712 277 RFDD---GVGGDNEVQRTMLEIVN 297 (420)
Q Consensus 277 r~~~---~~~~~~~~~~~l~~ll~ 297 (420)
-.+- ..-+...+|+.|+.|++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllE 330 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLE 330 (564)
T ss_pred CccccccccccchhHHHHHHHHhc
Confidence 2211 12234678888888876
No 215
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.91 E-value=1.3e-08 Score=97.34 Aligned_cols=119 Identities=19% Similarity=0.298 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhhHH
Q 014712 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGAR 248 (420)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~~~ 248 (420)
+...+...+...+.. +..+.+++|+||||+|||+||-|+++++ |..++.+..++++.........
T Consensus 87 ~~~~~l~~~~~~~~~------------~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 87 IDKKALEDLASLVEF------------FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred hhHHHHHHHHHHHHH------------hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 445566666666644 1257799999999999999999999976 7889999999988765333221
Q ss_pred -HHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 249 -MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 249 -~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.....+... -....+|+|||+...- .+......+.+++...-. ... . |+|||.+
T Consensus 155 ~~~~~~l~~~-l~~~dlLIiDDlG~~~---------~~~~~~~~~~q~I~~r~~---~~~-~-~~tsN~~ 209 (254)
T COG1484 155 GRLEEKLLRE-LKKVDLLIIDDIGYEP---------FSQEEADLLFQLISRRYE---SRS-L-IITSNLS 209 (254)
T ss_pred CchHHHHHHH-hhcCCEEEEecccCcc---------CCHHHHHHHHHHHHHHHh---hcc-c-eeecCCC
Confidence 111111111 2345699999987752 244455666676665421 222 2 8899975
No 216
>PF13173 AAA_14: AAA domain
Probab=98.90 E-value=1.4e-08 Score=86.77 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=75.5
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~ 280 (420)
+.++|+||+|||||++++.++..+. ..++++++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 4689999999999999999999876 77888887765443211111 222222222235679999999987
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccc--cCcCcccEEEEccCCCHHH
Q 014712 281 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPAL--LRPGRLDRKVEFGLPDLES 343 (420)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al--~r~gRfd~~i~~~~Pd~~~ 343 (420)
+.+...+..+.+. ..++.+|+|++....+.... .-+||. ..+++.+.+..+
T Consensus 74 -----~~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 3455566666552 23566777776654442211 123576 467777777654
No 217
>PRK09183 transposase/IS protein; Provisional
Probab=98.90 E-value=7.1e-09 Score=99.39 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=69.6
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhh-hHHHHHHHHHHHHhCCCcEEEecCcccccC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE-GARMVRELFQMARSKKACIVFFDEVDAIGG 275 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~-~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~ 275 (420)
....+++|+||||||||+||.+++..+ |..+.++++.++...+... ....+...+... ...+.+++|||++.+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~- 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP- 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC-
Confidence 346689999999999999999998753 6677778877776443221 111233444443 3456799999998752
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+...+..++++++...+ .+ .+|+|||.+
T Consensus 178 --------~~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 178 --------FSQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred --------CChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 244556778888876532 22 378899875
No 218
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.89 E-value=3.9e-09 Score=98.21 Aligned_cols=180 Identities=18% Similarity=0.338 Sum_probs=100.4
Q ss_pred cccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC---cEEEEecc-hh----hhhh
Q 014712 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVIGS-EL----VQKY 242 (420)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~---~~i~v~~~-~l----~~~~ 242 (420)
.|.++.++.|.+++.. .+...++|+||.|+|||+|++.+.+.... ..+++... .. ....
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5788888889888765 24568999999999999999999998732 11111110 00 0000
Q ss_pred -------------h-----------------hhhHHHHHHHHHHHHhC-CCcEEEecCccccc-CCccCCCCCCCHHHHH
Q 014712 243 -------------V-----------------GEGARMVRELFQMARSK-KACIVFFDEVDAIG-GARFDDGVGGDNEVQR 290 (420)
Q Consensus 243 -------------~-----------------g~~~~~v~~~f~~a~~~-~p~Il~iDEiD~l~-~~r~~~~~~~~~~~~~ 290 (420)
. ......+..++...... ...||+|||++.+. ..+ .......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHH
Confidence 0 11223345555554442 33799999999996 211 2344555
Q ss_pred HHHHHHHHhcCCcCCCCeEEEEEeCCCC------CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcC-CC-CCCcc
Q 014712 291 TMLEIVNQLDGFDARGNIKVLMATNRPD------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM-NC-ERDIR 362 (420)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~ttn~~~------~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~-~~-~~~v~ 362 (420)
.+..++.. .....++.+|+++.... .-...+.. |+.. +.+++.+.++..++++..++.. ++ .++.+
T Consensus 143 ~l~~~~~~---~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T PF01637_consen 143 SLRSLLDS---LLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDED 216 (234)
T ss_dssp HHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHH
T ss_pred HHHHHHhh---ccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHH
Confidence 55555544 22355666666655421 11223333 7766 9999999999999999987665 12 24567
Q ss_pred HHHHHhhCCCCcc
Q 014712 363 FELLSRLCPNSTG 375 (420)
Q Consensus 363 l~~la~~t~g~sg 375 (420)
++.+...|.|.++
T Consensus 217 ~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 217 IEEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHHTT-HH
T ss_pred HHHHHHHhCCCHH
Confidence 8899999999876
No 219
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.1e-08 Score=101.20 Aligned_cols=132 Identities=17% Similarity=0.254 Sum_probs=92.6
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCC-------------------------cEEEEecchh---hhhh-hhhhHHHH
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDA-------------------------CFIRVIGSEL---VQKY-VGEGARMV 250 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~-------------------------~~i~v~~~~l---~~~~-~g~~~~~v 250 (420)
..+..+||+||+|+|||++|+.+|+.+.+ .|+.+....- .++. ..-+-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45668999999999999999999997532 1233322100 0000 00123456
Q ss_pred HHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccC
Q 014712 251 RELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLR 326 (420)
Q Consensus 251 ~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r 326 (420)
|.+...+.. ....|+++|+++.+ +...++.++.++++. ..++.+|++|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep-----~~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEP-----PPQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhC-----cCCCEEEEEeCChHhChHHHHH
Confidence 666555543 44569999999998 678888888888764 2457788899999999999998
Q ss_pred cCcccEEEEccCCCHHHHHHHHHH
Q 014712 327 PGRLDRKVEFGLPDLESRTQIFKI 350 (420)
Q Consensus 327 ~gRfd~~i~~~~Pd~~~R~~Il~~ 350 (420)
|+ ..+.|++|+.++..+.|..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 87 7889999999887766653
No 220
>PRK06921 hypothetical protein; Provisional
Probab=98.88 E-value=1.9e-08 Score=96.83 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=65.5
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCccc-ccC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA-IGG 275 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~-l~~ 275 (420)
...+++|+||||+|||+|+.++|+++ +..++++...++........ ......+.. .....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEeccccccCC
Confidence 35689999999999999999999975 56777787766654432211 111122222 24567999999954 212
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.. ..+...+..+..+++... ..+..+|+|||.+
T Consensus 193 ~e-----~~t~~~~~~lf~iin~R~----~~~k~tIitsn~~ 225 (266)
T PRK06921 193 KP-----RATEWQIEQMYSVLNYRY----LNHKPILISSELT 225 (266)
T ss_pred Cc-----cCCHHHHHHHHHHHHHHH----HCCCCEEEECCCC
Confidence 11 123444567788887643 1233478888864
No 221
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.87 E-value=1.8e-08 Score=98.74 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=66.1
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhh-HHHHHHHHHHHHhCCCcEEEecCcccccCC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~-~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~ 276 (420)
..+|++||||+|||||+||.|+|+++ |.++..+..++++....... ...+...+... ....+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCcc--
Confidence 45799999999999999999999987 77788888887765542221 11122333332 345699999997642
Q ss_pred ccCCCCCCCHHHH-HHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 277 RFDDGVGGDNEVQ-RTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 277 r~~~~~~~~~~~~-~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.++... ..+..+++.-- ..+..+|+|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R~----~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRM----QEELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHH----HCCCeEEEECCCC
Confidence 123333 23444555311 2456799999964
No 222
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.84 E-value=4.1e-09 Score=95.33 Aligned_cols=102 Identities=22% Similarity=0.361 Sum_probs=65.1
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhh-HHHHHHHHHHHHhCCCcEEEecCcccccC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGG 275 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~-~~~v~~~f~~a~~~~p~Il~iDEiD~l~~ 275 (420)
..+.+++|+||+|||||+||.++++++ +.+..+++.++++....... .......+.... .+.+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee-
Confidence 346789999999999999999999865 88889999988876643221 111223333332 34699999986541
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+......+.++++.-. . +..+|+|||..
T Consensus 122 --------~~~~~~~~l~~ii~~R~----~-~~~tIiTSN~~ 150 (178)
T PF01695_consen 122 --------LSEWEAELLFEIIDERY----E-RKPTIITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHH----H-T-EEEEEESS-
T ss_pred --------ecccccccchhhhhHhh----c-ccCeEeeCCCc
Confidence 24556677788887643 1 23577899964
No 223
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.83 E-value=7.9e-08 Score=91.07 Aligned_cols=88 Identities=27% Similarity=0.352 Sum_probs=56.2
Q ss_pred CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC-------------CCCCCccccCc
Q 014712 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-------------PDTLDPALLRP 327 (420)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~-------------~~~ld~al~r~ 327 (420)
-|.+|||||++.| +-+...-|...++ +.-.-+||++||+ |.-+++.|+.
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 4779999999887 4444333333332 1223457888874 4556777777
Q ss_pred CcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHh
Q 014712 328 GRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSR 368 (420)
Q Consensus 328 gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~ 368 (420)
|+ .+|..-+.+.++.++|+++..+..++. ++..+..++.
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~ 397 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAE 397 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHh
Confidence 66 566667788899999999988666554 2223444444
No 224
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.83 E-value=1.9e-08 Score=106.99 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=91.9
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecchhhhhhhhhhH--HHHH-H--HHHH--HHhCCCcEEEecCcccc
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKYVGEGA--RMVR-E--LFQM--ARSKKACIVFFDEVDAI 273 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~~~~~g~~~--~~v~-~--~f~~--a~~~~p~Il~iDEiD~l 273 (420)
.+|||.|+||||||++|++++..+.. +|+.+..........|... ..+. . .|.. .......+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998753 5887764322222222210 0000 0 0000 00122359999999998
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHhc------CCc--CCCCeEEEEEeCCCC---CCCccccCcCcccEEEEccC-CCH
Q 014712 274 GGARFDDGVGGDNEVQRTMLEIVNQLD------GFD--ARGNIKVLMATNRPD---TLDPALLRPGRLDRKVEFGL-PDL 341 (420)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~~--~~~~v~vI~ttn~~~---~ld~al~r~gRfd~~i~~~~-Pd~ 341 (420)
++..|..|++.+++-. |.. ...++.||+|+|..+ .+.++|+. ||+..+.+.. |+.
T Consensus 97 -----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 -----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred -----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 6888999999887532 211 124688999888765 68899999 9998877754 677
Q ss_pred HHHHHHHHHHH
Q 014712 342 ESRTQIFKIHT 352 (420)
Q Consensus 342 ~~R~~Il~~~~ 352 (420)
++|.+|++.+.
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 88899887765
No 225
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.82 E-value=3.7e-08 Score=98.04 Aligned_cols=162 Identities=26% Similarity=0.376 Sum_probs=107.9
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec---------
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG--------- 235 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~--------- 235 (420)
..|.-++|++..+..|--....| .-.|+||-|+.||||||++|++|.-+.---....|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 45667999999888776554332 23489999999999999999999976322211111
Q ss_pred ----chhhhh-------------------hhhhhHH-HHHHH------------HH---HHHhCCCcEEEecCcccccCC
Q 014712 236 ----SELVQK-------------------YVGEGAR-MVREL------------FQ---MARSKKACIVFFDEVDAIGGA 276 (420)
Q Consensus 236 ----~~l~~~-------------------~~g~~~~-~v~~~------------f~---~a~~~~p~Il~iDEiD~l~~~ 276 (420)
.++..+ -.+.++. .+..+ |+ .++.+ -.|+++||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL--- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL--- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc---
Confidence 111111 1222333 21111 11 12222 249999999988
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHh------cC--CcCCCCeEEEEEeCCC-CCCCccccCcCcccEEEEccCC-CHHHHHH
Q 014712 277 RFDDGVGGDNEVQRTMLEIVNQL------DG--FDARGNIKVLMATNRP-DTLDPALLRPGRLDRKVEFGLP-DLESRTQ 346 (420)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l------~~--~~~~~~v~vI~ttn~~-~~ld~al~r~gRfd~~i~~~~P-d~~~R~~ 346 (420)
+...+..|+..+.+- +| +...-++++|+|+|.- ..|-|.|+. ||...+.+..| +.+.|.+
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 678899998888763 22 3344579999999975 567788888 99999999776 7788888
Q ss_pred HHHHHHh
Q 014712 347 IFKIHTR 353 (420)
Q Consensus 347 Il~~~~~ 353 (420)
|.+....
T Consensus 227 Ii~r~~~ 233 (423)
T COG1239 227 IIRRRLA 233 (423)
T ss_pred HHHHHHH
Confidence 8876654
No 226
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.81 E-value=6.5e-08 Score=92.86 Aligned_cols=159 Identities=19% Similarity=0.290 Sum_probs=91.2
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCC-cEEE--Eec-----chhhhh---hhhh------hHHHHHHH----HHHHHhCC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDA-CFIR--VIG-----SELVQK---YVGE------GARMVREL----FQMARSKK 261 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~-~~i~--v~~-----~~l~~~---~~g~------~~~~v~~~----f~~a~~~~ 261 (420)
..++|+||+|+|||++++.+++.+.. .+.. +.. .++... ..|. .....+.+ ......+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 2221 111 111111 0111 01111222 22234567
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC--CCCC----ccccCcCcccEEEE
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP--DTLD----PALLRPGRLDRKVE 335 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~--~~ld----~al~r~gRfd~~i~ 335 (420)
+.+|+|||++.+ +......+..+.+... .....+.|++++... +.+. ..+.+ |+...+.
T Consensus 124 ~~vliiDe~~~l-----------~~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 124 RALLVVDEAQNL-----------TPELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred CeEEEEECcccC-----------CHHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 789999999987 2333344433332211 112234444444321 1111 13444 7778899
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCC-----CCccHHHHHhhCCCCccc
Q 014712 336 FGLPDLESRTQIFKIHTRTMNCE-----RDIRFELLSRLCPNSTGK 376 (420)
Q Consensus 336 ~~~Pd~~~R~~Il~~~~~~~~~~-----~~v~l~~la~~t~g~sga 376 (420)
+++.+.++-..++...++..+.. .+..++.|++.|.|.++.
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~ 234 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL 234 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH
Confidence 99999999999999888654321 223577889999998774
No 227
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.79 E-value=8.4e-08 Score=100.21 Aligned_cols=159 Identities=21% Similarity=0.312 Sum_probs=106.8
Q ss_pred cceeeCCCCChHHHHHHHHHHhc----------CCcEEEEecchhhhh---h-------hhh------hHHHHHHHHHHH
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGSELVQK---Y-------VGE------GARMVRELFQMA 257 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~~~~l~~~---~-------~g~------~~~~v~~~f~~a 257 (420)
.+++.|-||||||.+++.+-..+ ...++.+++..+... | .|+ +-..+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 58999999999999999998854 457888888766432 1 111 111222223211
Q ss_pred -HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccC--cCccc-EE
Q 014712 258 -RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLR--PGRLD-RK 333 (420)
Q Consensus 258 -~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r--~gRfd-~~ 333 (420)
....++||+|||+|.|.... |..|+.++++-. .++.+++||+.+|..+....-|.. ..|++ ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 22567899999999997643 778888888754 245678888988876533222221 12544 48
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcc
Q 014712 334 VEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTG 375 (420)
Q Consensus 334 i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sg 375 (420)
+.|.+++..+..+|+...+.....-.+--.+.+|+.....||
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG 612 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG 612 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc
Confidence 899999999999999999977643333335666666666666
No 228
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.77 E-value=2.4e-08 Score=103.66 Aligned_cols=147 Identities=22% Similarity=0.309 Sum_probs=92.1
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC----cEEEE------e
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA----CFIRV------I 234 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~----~~i~v------~ 234 (420)
..|.++.|...+++.+.-. +....+++|+||||||||++++.++..+.. ..+.+ .
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 3677788887766654322 234568999999999999999999975421 11111 0
Q ss_pred cc----------hhhh--------hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHH
Q 014712 235 GS----------ELVQ--------KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (420)
Q Consensus 235 ~~----------~l~~--------~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (420)
+. .+.. ..+|.+...-...+..|.. .+|||||++.+ +...+..|.+.+
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHHHHHHHHHHH
Confidence 10 0000 0122111111233444433 49999999886 677888888887
Q ss_pred HHhc----C----CcCCCCeEEEEEeCCCC---------------------CCCccccCcCcccEEEEccCCCHH
Q 014712 297 NQLD----G----FDARGNIKVLMATNRPD---------------------TLDPALLRPGRLDRKVEFGLPDLE 342 (420)
Q Consensus 297 ~~l~----~----~~~~~~v~vI~ttn~~~---------------------~ld~al~r~gRfd~~i~~~~Pd~~ 342 (420)
+.-. . .....++.+|+|+|... .+...++. |||..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 5422 0 11234689999999742 36668888 99999999988654
No 229
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.75 E-value=3.5e-08 Score=101.85 Aligned_cols=150 Identities=22% Similarity=0.356 Sum_probs=99.2
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~ 242 (420)
.+..+.|.+..++.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 4456888888888888776541 1234679999999999999999998864 5789999998764322
Q ss_pred hhhhHHHHHHHHHH---------------HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--Cc--
Q 014712 243 VGEGARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD-- 303 (420)
Q Consensus 243 ~g~~~~~v~~~f~~---------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~-- 303 (420)
.. ..+|-. .......+||||||+.+ +...|..+.+++..-.- ..
T Consensus 206 ~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 206 LE------SELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred HH------HHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCC
Confidence 11 111110 01123469999999998 68889999998875320 00
Q ss_pred --CCCCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHHH
Q 014712 304 --ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (420)
Q Consensus 304 --~~~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~ 346 (420)
...++.+|+||+.. ..+.+.|.. |+ ..+.+..|...+|.+
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDG 317 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchh
Confidence 11267899998864 233444443 44 345667777777765
No 230
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.70 E-value=1.3e-07 Score=98.26 Aligned_cols=179 Identities=21% Similarity=0.321 Sum_probs=111.3
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~ 242 (420)
.+.++.|....++.+.+.+.... .....++++|++|||||++|++++... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 45678888888888877775411 235579999999999999999999875 5799999998763321
Q ss_pred hhhhHHHHHHHHHHH---------------HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--Cc--
Q 014712 243 VGEGARMVRELFQMA---------------RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD-- 303 (420)
Q Consensus 243 ~g~~~~~v~~~f~~a---------------~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~-- 303 (420)
. -..+|... .......|||||++.+ +...|..+..+++.-.- ..
T Consensus 205 ~------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 205 I------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred H------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCC
Confidence 1 11121110 1123458999999998 67888888888875321 00
Q ss_pred --CCCCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHHH----HHHHHHhcC----CCC-CCccHHH
Q 014712 304 --ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFEL 365 (420)
Q Consensus 304 --~~~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~----Il~~~~~~~----~~~-~~v~l~~ 365 (420)
...++.+|+||+.. ..+.+.|.. |+ ..+.+..|...+|.+ ++..++... +.. ..+.-+.
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 344 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPET 344 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 12357899998763 234455555 55 235555666655554 555555332 221 1244455
Q ss_pred HHhhC-CCCcc
Q 014712 366 LSRLC-PNSTG 375 (420)
Q Consensus 366 la~~t-~g~sg 375 (420)
+..+. ..|+|
T Consensus 345 ~~~L~~~~wpg 355 (469)
T PRK10923 345 EAALTRLAWPG 355 (469)
T ss_pred HHHHHhCCCCC
Confidence 55543 36666
No 231
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.69 E-value=6.7e-08 Score=96.71 Aligned_cols=107 Identities=22% Similarity=0.326 Sum_probs=64.9
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCC-cEEEEecchhhhhhhhh------hHHHHHHHHHHHHhCCCcEEEecCcc
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDA-CFIRVIGSELVQKYVGE------GARMVRELFQMARSKKACIVFFDEVD 271 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~-~~i~v~~~~l~~~~~g~------~~~~v~~~f~~a~~~~p~Il~iDEiD 271 (420)
..+|+|++|||++|+|||+|+-.+.+.+.. .-.++.-.+++...-.. ...-+..+.... .....+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l-~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL-AKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH-HhcCCEEEEeeee
Confidence 467999999999999999999999987754 22223223333221111 011122222222 2333499999997
Q ss_pred cccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC-CCCC
Q 014712 272 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DTLD 321 (420)
Q Consensus 272 ~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~-~~ld 321 (420)
.- +..-...+..|+..+- ..++++|+|+|++ +.|-
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLY 173 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHc
Confidence 63 3333455556776654 5678999999984 4443
No 232
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.68 E-value=2.4e-07 Score=95.89 Aligned_cols=153 Identities=24% Similarity=0.362 Sum_probs=96.2
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~ 242 (420)
.+..+.|.+.....+.+.+.... .....++++|++||||+++|+++.... +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA-----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc-----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 34457787777777766654421 234579999999999999999998754 5799999998764321
Q ss_pred h-----hhhHHH-------HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CCc----C
Q 014712 243 V-----GEGARM-------VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----A 304 (420)
Q Consensus 243 ~-----g~~~~~-------v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~----~ 304 (420)
. |..... ....|.. ....+|||||||.+ +...|..+..++..-. ... .
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 1 100000 0011211 23459999999998 6788888888887522 000 1
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHHH
Q 014712 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (420)
Q Consensus 305 ~~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~ 346 (420)
..++.+|+||+.. ..+.+.+.. |+ ..+.+..|...+|.+
T Consensus 276 ~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l-~~~~i~~ppLreR~~ 321 (457)
T PRK11361 276 KVDIRIIAATNRDLQAMVKEGTFREDLFY--RL-NVIHLILPPLRDRRE 321 (457)
T ss_pred eeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhchh
Confidence 2357899999864 123333333 33 246677787777764
No 233
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=3.2e-07 Score=88.75 Aligned_cols=131 Identities=11% Similarity=0.132 Sum_probs=89.1
Q ss_pred HHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc----------------EEEEecchh
Q 014712 175 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------FIRVIGSEL 238 (420)
Q Consensus 175 ~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~----------------~i~v~~~~l 238 (420)
...+.|...+.. -.-+..+||+||.|+||+.+|.++|..+-+. +..+.. +-
T Consensus 4 ~~~~~L~~~i~~------------~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p-~~ 70 (290)
T PRK05917 4 AAWEALIQRVRD------------QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP-QG 70 (290)
T ss_pred HHHHHHHHHHHc------------CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec-CC
Confidence 345566666654 1345689999999999999999999976431 111211 00
Q ss_pred hhhhhhhhHHHHHHHHHHH----HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 239 VQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
.+.. -+-..+|.+...+ ..+...|++||++|.+ +.+.++.|+..+++ +..++++|..|
T Consensus 71 ~~~~--I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~ 132 (290)
T PRK05917 71 KGRL--HSIETPRAIKKQIWIHPYESPYKIYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTS 132 (290)
T ss_pred CCCc--CcHHHHHHHHHHHhhCccCCCceEEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEe
Confidence 0000 0122344444333 3345569999999998 67778888888875 57789999999
Q ss_pred CCCCCCCccccCcCcccEEEEccCC
Q 014712 315 NRPDTLDPALLRPGRLDRKVEFGLP 339 (420)
Q Consensus 315 n~~~~ld~al~r~gRfd~~i~~~~P 339 (420)
+.++.+.|.+++ |+ ..+.|+++
T Consensus 133 ~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 133 AKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CChhhCcHHHHh--cc-eEEEccch
Confidence 999999999999 87 67777754
No 234
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.65 E-value=1.1e-07 Score=103.54 Aligned_cols=134 Identities=20% Similarity=0.228 Sum_probs=83.0
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC-------CcEEEEecchhhhhh-hhhhHHHH-HHHHHHHHhCCCcEEEecCcc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRVIGSELVQKY-VGEGARMV-RELFQMARSKKACIVFFDEVD 271 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~-------~~~i~v~~~~l~~~~-~g~~~~~v-~~~f~~a~~~~p~Il~iDEiD 271 (420)
...+|||+|+||||||.+|+++++... .++..+.+....... ...++..+ ...+.. ....+++|||++
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvl---AdgGtL~IDEid 567 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVL---ANGGVCCIDELD 567 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEE---cCCCeEEecchh
Confidence 344899999999999999999998542 344444333321100 00000000 001111 223599999999
Q ss_pred cccCCccCCCCCCCHHHHHHHHHHHHHhc------CC--cCCCCeEEEEEeCCC-------------CCCCccccCcCcc
Q 014712 272 AIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-------------DTLDPALLRPGRL 330 (420)
Q Consensus 272 ~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~ttn~~-------------~~ld~al~r~gRf 330 (420)
.+ +...|..|.+++++-. |. .-+.++.||+|+|.. -.|+++|++ ||
T Consensus 568 km-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 568 KC-----------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred hC-----------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 98 6778888999886522 11 123578999999974 246789999 99
Q ss_pred cEEEEc-cCCCHHHHHHHHHH
Q 014712 331 DRKVEF-GLPDLESRTQIFKI 350 (420)
Q Consensus 331 d~~i~~-~~Pd~~~R~~Il~~ 350 (420)
|.++.+ +.|+.+.=..|-.+
T Consensus 635 DLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred cEEEEecCCCChHHHHHHHHH
Confidence 987554 66776554444333
No 235
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.63 E-value=3.7e-07 Score=104.79 Aligned_cols=180 Identities=21% Similarity=0.312 Sum_probs=106.7
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcE---EEEecc--
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF---IRVIGS-- 236 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~---i~v~~~-- 236 (420)
.+...+++++|.+..++++..++.. +....+.+.|+|++|+||||||+++++.....| +.++..
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v 246 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFI 246 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccc
Confidence 3445678899999999999988754 223456789999999999999999988764332 122110
Q ss_pred -hhhhhh-----------hhhhHHHHHH-------------HHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHH
Q 014712 237 -ELVQKY-----------VGEGARMVRE-------------LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 291 (420)
Q Consensus 237 -~l~~~~-----------~g~~~~~v~~-------------~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~ 291 (420)
.....+ ..-....+.. ........++.+|+||+++.. .....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~ 313 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDA 313 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHH
Confidence 000000 0000001111 112223356779999998642 12122
Q ss_pred HHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCcc----HHHHH
Q 014712 292 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIR----FELLS 367 (420)
Q Consensus 292 l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~----l~~la 367 (420)
+....+.+ ..+..||+||+... +.+....++.++++.|+.++..++|..++.+.....+ + ...++
T Consensus 314 ---L~~~~~~~--~~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~-~~~~l~~~iv 382 (1153)
T PLN03210 314 ---LAGQTQWF--GSGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPD-GFMELASEVA 382 (1153)
T ss_pred ---HHhhCccC--CCCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHH
Confidence 22222212 23456788888543 3322346788999999999999999988754433221 2 34577
Q ss_pred hhCCCCccc
Q 014712 368 RLCPNSTGK 376 (420)
Q Consensus 368 ~~t~g~sga 376 (420)
+.|.|.+-|
T Consensus 383 ~~c~GLPLA 391 (1153)
T PLN03210 383 LRAGNLPLG 391 (1153)
T ss_pred HHhCCCcHH
Confidence 888888753
No 236
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.61 E-value=1.1e-06 Score=89.84 Aligned_cols=209 Identities=14% Similarity=0.170 Sum_probs=116.4
Q ss_pred CCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcE
Q 014712 151 DPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (420)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 230 (420)
.+.....|++++.+.+.+++.-...-+.++++|+.... .|. .--..+-+||+||+||||||.++.++.++|..+
T Consensus 65 ~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~----~~~--~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 65 KEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVA----EFT--PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred CccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHH----Hhc--cCCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 34556789999999999999999999999999987211 000 011234688999999999999999999998877
Q ss_pred EEEecc-hh------------hhhhhhhhHHHHHHHHHHH------------HhCCCcEEEecCcccccCCccCCCCCCC
Q 014712 231 IRVIGS-EL------------VQKYVGEGARMVRELFQMA------------RSKKACIVFFDEVDAIGGARFDDGVGGD 285 (420)
Q Consensus 231 i~v~~~-~l------------~~~~~g~~~~~v~~~f~~a------------~~~~p~Il~iDEiD~l~~~r~~~~~~~~ 285 (420)
+.-..+ .+ ...+...--.........+ ....+.+|++||+=..+.. .+
T Consensus 139 ~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~-------d~ 211 (634)
T KOG1970|consen 139 IEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR-------DD 211 (634)
T ss_pred eeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh-------hh
Confidence 654411 11 1101111111111111122 1134569999998665432 12
Q ss_pred HHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC--CCCCCcccc------CcCcccEEEEccCCCHHHHHHHHHHHHhcCCC
Q 014712 286 NEVQRTMLEIVNQLDGFDARGNIKVLMATNR--PDTLDPALL------RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 357 (420)
Q Consensus 286 ~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~--~~~ld~al~------r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~ 357 (420)
.+.++.+++++...- .-.+ ||+.|+. ++..++..+ -..|+ ..|.|.+-...-....|+.+++....
T Consensus 212 ~~~f~evL~~y~s~g----~~Pl-If~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~ 285 (634)
T KOG1970|consen 212 SETFREVLRLYVSIG----RCPL-IFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEAN 285 (634)
T ss_pred HHHHHHHHHHHHhcC----CCcE-EEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcc
Confidence 333333333433321 2233 3344432 233332222 12244 46788776666666677776655433
Q ss_pred CCC----ccHHHHHhhCCCCcccccc
Q 014712 358 ERD----IRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 358 ~~~----v~l~~la~~t~g~sgadl~ 379 (420)
... -+..++...+.|-.| ||+
T Consensus 286 ~~s~~k~~~~~~v~~i~~~s~G-DIR 310 (634)
T KOG1970|consen 286 KKSGIKVPDTAEVELICQGSGG-DIR 310 (634)
T ss_pred cccCCcCchhHHHHHHHHhcCc-cHH
Confidence 321 234555566666444 777
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.61 E-value=3.2e-07 Score=80.27 Aligned_cols=110 Identities=21% Similarity=0.331 Sum_probs=66.9
Q ss_pred ceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh------------------------hhhhHHHHHHHHHHH
Q 014712 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------------------------VGEGARMVRELFQMA 257 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~------------------------~g~~~~~v~~~f~~a 257 (420)
++|+||||+|||+++..++... +.+.++++........ ........+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998875 5666666654332110 000111122334555
Q ss_pred HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
....|.+++|||+..+.........+.+....+.+..++.... ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6678899999999987543210001123344555666665543 35778888887664
No 238
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.57 E-value=1e-07 Score=91.96 Aligned_cols=137 Identities=22% Similarity=0.355 Sum_probs=78.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCc---EEEEecchhhhhhhhhhHHHHHHHHHHH-----------HhCCCcEEEe
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSELVQKYVGEGARMVRELFQMA-----------RSKKACIVFF 267 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~---~i~v~~~~l~~~~~g~~~~~v~~~f~~a-----------~~~~p~Il~i 267 (420)
.+++||+||+|||||++++.+-..+... ...++++.. .+...+..+.+.. ..++..|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 5689999999999999999888765432 223333322 1222222222211 1134469999
Q ss_pred cCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC--------CCCeEEEEEeCCC---CCCCccccCcCcccEEEEc
Q 014712 268 DEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA--------RGNIKVLMATNRP---DTLDPALLRPGRLDRKVEF 336 (420)
Q Consensus 268 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~--------~~~v~vI~ttn~~---~~ld~al~r~gRfd~~i~~ 336 (420)
||+..-..... +.......|.++++.- |+.. -.++.+|++++.. ..+++.++| .| .++.+
T Consensus 107 DDlN~p~~d~y-----gtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~ 177 (272)
T PF12775_consen 107 DDLNMPQPDKY-----GTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNI 177 (272)
T ss_dssp ETTT-S---TT-----S--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE-
T ss_pred cccCCCCCCCC-----CCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEe
Confidence 99987644322 2223344555555532 2221 2368888888854 246778887 77 78999
Q ss_pred cCCCHHHHHHHHHHHHh
Q 014712 337 GLPDLESRTQIFKIHTR 353 (420)
Q Consensus 337 ~~Pd~~~R~~Il~~~~~ 353 (420)
+.|+.++...|+..++.
T Consensus 178 ~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ---TCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHh
Confidence 99999988888877664
No 239
>PRK15115 response regulator GlrR; Provisional
Probab=98.56 E-value=6.5e-07 Score=92.39 Aligned_cols=154 Identities=23% Similarity=0.379 Sum_probs=95.2
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhh
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE 245 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~ 245 (420)
.+.|.......+.+.+.... .....++++|++|||||++|+++.... +.+|+.++|..+......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a-----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~- 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA-----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE- 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhc-----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH-
Confidence 35666666655555444311 224469999999999999999998864 579999999876332211
Q ss_pred hHHHHHHHHHHH---------------HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--Cc----C
Q 014712 246 GARMVRELFQMA---------------RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD----A 304 (420)
Q Consensus 246 ~~~~v~~~f~~a---------------~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~----~ 304 (420)
..+|..+ ......+|||||||.+ +...|..+..++..-.- .. .
T Consensus 203 -----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 203 -----SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred -----HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCcee
Confidence 1122110 1123458999999998 67888899888865321 10 1
Q ss_pred CCCeEEEEEeCCCCCCCccccCcCccc-------EEEEccCCCHHHHHH----HHHHHHh
Q 014712 305 RGNIKVLMATNRPDTLDPALLRPGRLD-------RKVEFGLPDLESRTQ----IFKIHTR 353 (420)
Q Consensus 305 ~~~v~vI~ttn~~~~ld~al~r~gRfd-------~~i~~~~Pd~~~R~~----Il~~~~~ 353 (420)
..++.+|+||+.. +... ...|+|. ..+.+..|...+|.+ +++.+++
T Consensus 267 ~~~~rii~~~~~~--l~~~-~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~ 323 (444)
T PRK15115 267 DIDVRIISATHRD--LPKA-MARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLR 323 (444)
T ss_pred eeeEEEEEeCCCC--HHHH-HHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHH
Confidence 1267899998853 2221 1223331 256677788888864 4455543
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.56 E-value=3.5e-07 Score=77.64 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=47.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc--------CCcEEEEecchhhhh--h------------h--hhhHHHHHHHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT--------DACFIRVIGSELVQK--Y------------V--GEGARMVRELFQMA 257 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~--------~~~~i~v~~~~l~~~--~------------~--g~~~~~v~~~f~~a 257 (420)
.+.++++||+|+|||++++.++... ...++.++++..... + . .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999976 677888877654311 0 0 11233334444444
Q ss_pred HhCCCcEEEecCcccc
Q 014712 258 RSKKACIVFFDEVDAI 273 (420)
Q Consensus 258 ~~~~p~Il~iDEiD~l 273 (420)
......+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 4455569999999997
No 241
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.54 E-value=2.4e-07 Score=98.78 Aligned_cols=54 Identities=30% Similarity=0.473 Sum_probs=46.1
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
....|+..|+++.|+++++..|..++.. +.+++|+||||||||++|++++..+.
T Consensus 22 ~~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 22 DIEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ecccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3456778999999999999999887764 23799999999999999999998764
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.52 E-value=2.6e-06 Score=82.29 Aligned_cols=183 Identities=18% Similarity=0.252 Sum_probs=108.0
Q ss_pred ccccHHHHH---HHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecch
Q 014712 170 VGGCKEQIE---KMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSE 237 (420)
Q Consensus 170 i~G~~~~~~---~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~~ 237 (420)
.+|...+.+ .|.+.+..|-.. ...++||+|++|.|||++++.++... ..|++.+.++.
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~----------Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRH----------RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCccc----------CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 455555554 444444443222 34579999999999999999998743 24677776542
Q ss_pred hhhh---h-------------hhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC
Q 014712 238 LVQK---Y-------------VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (420)
Q Consensus 238 l~~~---~-------------~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 301 (420)
--+. | .....+.-..+....+...+-+|+|||++.++. ++...|+.++.+|..+.
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~- 176 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLG- 176 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHh-
Confidence 1110 0 011122223334455667778999999999754 34555777777777663
Q ss_pred CcCCCCeEEEEEeCCC----CCCCccccCcCcccEEEEccCCCH-HHHHHHHHHHHhcCCCCC--CccH----HHHHhhC
Q 014712 302 FDARGNIKVLMATNRP----DTLDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHTRTMNCER--DIRF----ELLSRLC 370 (420)
Q Consensus 302 ~~~~~~v~vI~ttn~~----~~ld~al~r~gRfd~~i~~~~Pd~-~~R~~Il~~~~~~~~~~~--~v~l----~~la~~t 370 (420)
+.-++.+|+..... =.-|+.+.+ || ..+.+|.-.. ++-..++..+-+.+++.. ++.- ..|-..|
T Consensus 177 --NeL~ipiV~vGt~~A~~al~~D~QLa~--RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s 251 (302)
T PF05621_consen 177 --NELQIPIVGVGTREAYRALRTDPQLAS--RF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERS 251 (302)
T ss_pred --hccCCCeEEeccHHHHHHhccCHHHHh--cc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHc
Confidence 23455566554321 223566777 88 4455554322 344557777777776652 2322 4566778
Q ss_pred CCCccc
Q 014712 371 PNSTGK 376 (420)
Q Consensus 371 ~g~sga 376 (420)
+|.+|.
T Consensus 252 ~G~iG~ 257 (302)
T PF05621_consen 252 EGLIGE 257 (302)
T ss_pred CCchHH
Confidence 898883
No 243
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.52 E-value=2.7e-07 Score=89.73 Aligned_cols=190 Identities=18% Similarity=0.283 Sum_probs=117.2
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE 237 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~ 237 (420)
..+...|+.+++.+...+.+.+...... .-.-.+||.|.+||||-++|+++.... ..+|+-++|..
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~A-----------mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~ 265 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKLA-----------MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCAS 265 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHhh-----------ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCC
Confidence 3456678888888887777766554311 112368999999999999999998754 68999999976
Q ss_pred hhhhh-----hhhh--HHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CCc----C
Q 014712 238 LVQKY-----VGEG--ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----A 304 (420)
Q Consensus 238 l~~~~-----~g~~--~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~----~ 304 (420)
+-... .|.. ..--..+|+.|..+ .+|+|||..+ ++..|..++.+++.-. ... -
T Consensus 266 lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev 331 (511)
T COG3283 266 LPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHEV 331 (511)
T ss_pred CchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcceE
Confidence 53321 1111 12223567776655 7999999887 7889999999987421 111 1
Q ss_pred CCCeEEEEEeCCC--CCCCccccCcCccc--EEEEccCCCHHHHHH--------HHHHHHhcCCCC-CCccHHHHHhhCC
Q 014712 305 RGNIKVLMATNRP--DTLDPALLRPGRLD--RKVEFGLPDLESRTQ--------IFKIHTRTMNCE-RDIRFELLSRLCP 371 (420)
Q Consensus 305 ~~~v~vI~ttn~~--~~ld~al~r~gRfd--~~i~~~~Pd~~~R~~--------Il~~~~~~~~~~-~~v~l~~la~~t~ 371 (420)
.-+|.||+||..+ +.....-.|...|. .++.+..|...+|.+ .++.++..+++. +..+-..+..++.
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 2269999999865 22333333322232 266677777776654 334455555544 2333333333332
Q ss_pred -CCcc
Q 014712 372 -NSTG 375 (420)
Q Consensus 372 -g~sg 375 (420)
++.|
T Consensus 412 y~WpG 416 (511)
T COG3283 412 YAWPG 416 (511)
T ss_pred cCCCc
Confidence 4444
No 244
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.6e-08 Score=100.45 Aligned_cols=47 Identities=30% Similarity=0.472 Sum_probs=40.7
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
...|.||.|++.+++.+.-+... ..++|++||||||||++|+-+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhccc
Confidence 45889999999999999877654 568999999999999999988764
No 245
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.51 E-value=1.4e-06 Score=81.98 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=82.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 281 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~ 281 (420)
..+..++||+|||||..++.+|..+|..++.++|++...- ..+..+|.=+... .+.+++||++.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 4567899999999999999999999999999999886432 3444555433332 358999999998
Q ss_pred CCCCHHHHHHHHHHHHHhcC---------------CcCCCCeEEEEEeCC----CCCCCccccCcCcccEEEEccCCCHH
Q 014712 282 VGGDNEVQRTMLEIVNQLDG---------------FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 342 (420)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l~~---------------~~~~~~v~vI~ttn~----~~~ld~al~r~gRfd~~i~~~~Pd~~ 342 (420)
+.++...+.+.+..+.. +.-+.+..+.+|.|. -..||..|+. .| |.+.+..||..
T Consensus 97 ---~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 97 ---SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred ---hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 67777777666665421 111224556666663 3568888877 66 88999999987
Q ss_pred HHHHHHHHHHhcCCC
Q 014712 343 SRTQIFKIHTRTMNC 357 (420)
Q Consensus 343 ~R~~Il~~~~~~~~~ 357 (420)
. |.+..+-..++
T Consensus 171 ~---I~ei~L~s~GF 182 (231)
T PF12774_consen 171 L---IAEILLLSQGF 182 (231)
T ss_dssp H---HHHHHHHCCCT
T ss_pred H---HHHHHHHHcCc
Confidence 4 55555544444
No 246
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.48 E-value=1.7e-06 Score=83.76 Aligned_cols=170 Identities=21% Similarity=0.242 Sum_probs=92.9
Q ss_pred HHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHh--cCCc---EEEEecchh------hhhh
Q 014712 174 KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR--TDAC---FIRVIGSEL------VQKY 242 (420)
Q Consensus 174 ~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~--~~~~---~i~v~~~~l------~~~~ 242 (420)
+..+++|.+.+... . .....+.|+|++|+|||+||+.+++. .... .+.++.+.- ....
T Consensus 2 e~~~~~l~~~L~~~----------~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN----------S-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT----------T-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC----------C-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 45566676666541 1 34567899999999999999999987 3322 233333211 1110
Q ss_pred ---hh---------hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEE
Q 014712 243 ---VG---------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (420)
Q Consensus 243 ---~g---------~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 310 (420)
.+ .........+.......+++|+||+++.. . .+..+...+.. ...+..|
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~--~~~~~ki 132 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE-------------E---DLEELREPLPS--FSSGSKI 132 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH-------------H---HH-------HC--HHSS-EE
T ss_pred cccccccccccccccccccccccchhhhccccceeeeeeeccc-------------c---ccccccccccc--ccccccc
Confidence 00 01112233333444556899999998764 1 22122221111 1235678
Q ss_pred EEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCC---CC-CCccHHHHHhhCCCCccc
Q 014712 311 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN---CE-RDIRFELLSRLCPNSTGK 376 (420)
Q Consensus 311 I~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~---~~-~~v~l~~la~~t~g~sga 376 (420)
|+||....... ... .-...+.++..+.++-.++|........ .. ..-....|++.|.|.+-|
T Consensus 133 lvTTR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 198 (287)
T PF00931_consen 133 LVTTRDRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLA 198 (287)
T ss_dssp EEEESCGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHH
T ss_pred ccccccccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88887643211 111 1147899999999999999998875443 11 122357899999987764
No 247
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.47 E-value=5.6e-07 Score=93.33 Aligned_cols=155 Identities=20% Similarity=0.351 Sum_probs=96.9
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhh
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVG 244 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g 244 (420)
..+.|.+.....+.+.+... ......+++.|.+||||+++|+++.... +.+|+.++|..+......
T Consensus 134 ~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 45788888888777766541 1234579999999999999999998864 579999999876332211
Q ss_pred hhHHHHHHHHHH---------------HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCC--c----
Q 014712 245 EGARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--D---- 303 (420)
Q Consensus 245 ~~~~~v~~~f~~---------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~--~---- 303 (420)
..+|-. ......+.||||||+.+ +...|..+.+++..-... .
T Consensus 203 ------~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 203 ------SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred ------HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCce
Confidence 011110 11223568999999998 678888898888753210 0
Q ss_pred CCCCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHH----HHHHHHHh
Q 014712 304 ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRT----QIFKIHTR 353 (420)
Q Consensus 304 ~~~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~----~Il~~~~~ 353 (420)
...++.+|++|+.. ..+.+.|.. |+. .+.+..|...+|. .++..+++
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHH
Confidence 11257889988754 123334443 442 3445555554443 35555543
No 248
>PF05729 NACHT: NACHT domain
Probab=98.44 E-value=3.4e-06 Score=74.16 Aligned_cols=140 Identities=15% Similarity=0.198 Sum_probs=77.1
Q ss_pred cceeeCCCCChHHHHHHHHHHhcC---------CcEEEEecchhhhhh------------hhhhHHHHHH-HHHHHHhCC
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIGSELVQKY------------VGEGARMVRE-LFQMARSKK 261 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~---------~~~i~v~~~~l~~~~------------~g~~~~~v~~-~f~~a~~~~ 261 (420)
-++|+|+||+|||++++.++..+. ..++.+.+....... .......... +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998641 112233333222110 0011111111 122234466
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC--CCccccCcCcccEEEEccCC
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT--LDPALLRPGRLDRKVEFGLP 339 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~--ld~al~r~gRfd~~i~~~~P 339 (420)
..+|+||.+|.+...... .........+.+++.. ....++.+|.|++.... +...+.. ...+.+...
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 779999999998542110 0111223334444443 12345667777654322 2222222 157888888
Q ss_pred CHHHHHHHHHHHHhc
Q 014712 340 DLESRTQIFKIHTRT 354 (420)
Q Consensus 340 d~~~R~~Il~~~~~~ 354 (420)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988754
No 249
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.41 E-value=2e-06 Score=76.59 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=73.5
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhhh--------hhh-----hhhHHHHHHHHHHHHhCC
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ--------KYV-----GEGARMVRELFQMARSKK 261 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~--------~~~-----g~~~~~v~~~f~~a~~~~ 261 (420)
+.+.++..+.|.||+|+|||||++.++.... .--+.+++..+.. ..+ =.+....+-.+..|....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 3467788899999999999999999998642 2223343322211 001 112234455667777789
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|.++++||- ..+-+......+.+++.++. ..+..+|++|++.+.
T Consensus 101 p~illlDEP----------~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~ 144 (163)
T cd03216 101 ARLLILDEP----------TAALTPAEVERLFKVIRRLR----AQGVAVIFISHRLDE 144 (163)
T ss_pred CCEEEEECC----------CcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHH
Confidence 999999994 44568888888888888764 224568888887653
No 250
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=2.9e-06 Score=80.51 Aligned_cols=121 Identities=7% Similarity=0.038 Sum_probs=79.4
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec--------------chhhhhhh---hhhHHHHHHHHHHHH----
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG--------------SELVQKYV---GEGARMVRELFQMAR---- 258 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~--------------~~l~~~~~---g~~~~~v~~~f~~a~---- 258 (420)
.+|..+||+||+|+||..+|.++|..+-+.--.-.| +++..-+. .-+...+|++.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467789999999999999999999865221000001 01100000 012223343333221
Q ss_pred h-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEcc
Q 014712 259 S-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 259 ~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~ 337 (420)
. +...|++|+++|.+ +.+..+.|+.+|++ +..++.+|.+|+.++.+.|.+++ |+ ..+.|+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RC-VQYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--he-eeeecC
Confidence 2 34579999999998 56667777777664 67889999999999999999999 87 456666
Q ss_pred CC
Q 014712 338 LP 339 (420)
Q Consensus 338 ~P 339 (420)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 251
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=1.6e-06 Score=84.73 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=63.7
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCCcE-EEEecchhhhh-------hhhhhHHHHHHHHHHHHhCCCcEEEecCc
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACF-IRVIGSELVQK-------YVGEGARMVRELFQMARSKKACIVFFDEV 270 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~~~-i~v~~~~l~~~-------~~g~~~~~v~~~f~~a~~~~p~Il~iDEi 270 (420)
..+++|++|||+-|+|||+|.......+...- .++....++.. ..|+.. -+..+-.. ......||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl~~iA~~-~~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PLPPIADE-LAAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-ccHHHHHH-HHhcCCEEEeeee
Confidence 45789999999999999999999988764422 22222222221 112221 11111111 1123359999998
Q ss_pred ccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC-CCCCCc
Q 014712 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLDP 322 (420)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~-~~~ld~ 322 (420)
..- +-.-.-.+..|++.+- ..+|++++|+|. |+.|-+
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcc
Confidence 762 3333445557777664 458999999997 454443
No 252
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.40 E-value=1.3e-06 Score=80.74 Aligned_cols=116 Identities=18% Similarity=0.274 Sum_probs=67.9
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh-----------------------hhhHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV-----------------------GEGARMVR 251 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~-----------------------g~~~~~v~ 251 (420)
|+++..-++++||||||||+++..++... +...++++..++..... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 77788889999999999999999988643 66777787754211100 01111233
Q ss_pred HHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 252 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
.+...+....+++|+||-+..+......+ ......+.+..++..+..+....++.+|+|...
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~---~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD---DRISRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC---ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 44444555678999999999885321111 111122233333333333333567777777543
No 253
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.37 E-value=6.3e-07 Score=80.58 Aligned_cols=59 Identities=29% Similarity=0.496 Sum_probs=38.7
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc---EEEEecchh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSEL 238 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~---~i~v~~~~l 238 (420)
++|.+++++++...+. .... ..++.++|+|++|+|||+++++++..+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQS---------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHc---------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5799999999999996 2222 356789999999999999999988765332 666665554
No 254
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.36 E-value=1.3e-06 Score=95.76 Aligned_cols=203 Identities=17% Similarity=0.174 Sum_probs=130.3
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccC-ChhhhhhcCCCCCC--cceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPML-HPEKFVKLGIDPPK--GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~-~~~~~~~~gi~~~~--~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
..|.+++.+....++.|.......+..++...-. .+..|...+..... .++++||||+|||+.+.++|..++..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 5688888888888888888777788888766411 11122222211111 36999999999999999999999999999
Q ss_pred Eecchhhhhhhh-----h--hHHHHHHHH---HH--HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc
Q 014712 233 VIGSELVQKYVG-----E--GARMVRELF---QM--ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (420)
Q Consensus 233 v~~~~l~~~~~g-----~--~~~~v~~~f---~~--a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (420)
.+.++..+++.. + ....+...| .. .....-.||++||+|.+.+ .++.....+..++.
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHH---
Confidence 998876654321 1 112222222 00 1112223999999999854 24444555555555
Q ss_pred CCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc
Q 014712 301 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 301 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~ 379 (420)
...+.+|+++|..+......+. |....+.|+.|+...+..-+...+....+. .+-.++.+..++ |+||+
T Consensus 457 ----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 457 ----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred ----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 2345799999987655443333 444788999999998887666666433322 233467777776 66877
No 255
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.36 E-value=2.8e-06 Score=79.55 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=24.4
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
.+.++.-+-|.||+|||||||.+.+|.-
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556677999999999999999999984
No 256
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=5.4e-06 Score=80.42 Aligned_cols=143 Identities=14% Similarity=0.183 Sum_probs=90.9
Q ss_pred cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEE--Eec--------------c
Q 014712 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR--VIG--------------S 236 (420)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~--v~~--------------~ 236 (420)
+..+++.++.++.. -..+..+||+|| +||+++|+++|..+-+.--. -.| +
T Consensus 7 q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45566677777654 144668999996 68999999999865321100 000 1
Q ss_pred hhhhhh-hh--hhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeE
Q 014712 237 ELVQKY-VG--EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (420)
Q Consensus 237 ~l~~~~-~g--~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (420)
++..-. .| -.-..+|++...+. .+...|++||++|.+ +....+.|+..|++ +..+++
T Consensus 73 D~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE-----Pp~~t~ 136 (290)
T PRK07276 73 DVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE-----PQSEIY 136 (290)
T ss_pred CeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC-----CCCCeE
Confidence 110000 01 12234555444332 344579999999998 56667777776664 567789
Q ss_pred EEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHH
Q 014712 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (420)
Q Consensus 310 vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~ 349 (420)
+|.+|+.++.+-|.+++ |+ ..+.|+. +.+.-.+++.
T Consensus 137 ~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 137 IFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 99999999999999999 88 7888865 5454444443
No 257
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.35 E-value=1.3e-05 Score=76.70 Aligned_cols=185 Identities=15% Similarity=0.186 Sum_probs=115.4
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhh----
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE---- 245 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~---- 245 (420)
+.|+.-+++.+-..+...+.++. -..|-.+-|+|++||||+++++.+|+.+-..-. .|.++..|+..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl---~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL---RSPFVHHFVATLHFP 154 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccc---cchhHHHhhhhccCC
Confidence 78888888888888877555531 123444568999999999999999996521111 12222222211
Q ss_pred --------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHh---cCCcCCCCeEEEEEe
Q 014712 246 --------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL---DGFDARGNIKVLMAT 314 (420)
Q Consensus 246 --------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l---~~~~~~~~v~vI~tt 314 (420)
..+....+-..+..++-++.++||+|.+ ++....++.-+|+.. +|.+. .+.++|+-+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~f-rkaIFIfLS 222 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDF-RKAIFIFLS 222 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccc-cceEEEEEc
Confidence 1222233444556677789999999998 666777777777642 33322 345566666
Q ss_pred CCC-----------------------CCCCc-----------------cccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 315 NRP-----------------------DTLDP-----------------ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 315 n~~-----------------------~~ld~-----------------al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
|.- ..+.+ .+....++|..|.|-+.++..-..-++.++++
T Consensus 223 N~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~ 302 (344)
T KOG2170|consen 223 NAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRK 302 (344)
T ss_pred CCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHh
Confidence 511 11111 22223457778888888888888888888888
Q ss_pred CCCCCCcc-HHHHHhhCCCCcc
Q 014712 355 MNCERDIR-FELLSRLCPNSTG 375 (420)
Q Consensus 355 ~~~~~~v~-l~~la~~t~g~sg 375 (420)
.++..+.+ .+.++....-|.-
T Consensus 303 rg~~~d~~~~erva~~l~ffp~ 324 (344)
T KOG2170|consen 303 RGLAPDQDFVERVANSLSFFPE 324 (344)
T ss_pred cccccchHHHHHHHHhhccccc
Confidence 77775543 4566666655543
No 258
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=7.1e-06 Score=80.15 Aligned_cols=142 Identities=11% Similarity=0.098 Sum_probs=94.1
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCC-------------cEEEEe--cchhhhhhhhhhHHHHHHHHHHHH----h-CC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDA-------------CFIRVI--GSELVQKYVGEGARMVRELFQMAR----S-KK 261 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~-------------~~i~v~--~~~l~~~~~g~~~~~v~~~f~~a~----~-~~ 261 (420)
+..+||+|+.|.||+.+|+.+++.+-+ .++.++ +.. -+-..++.+.+... . +.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcccCC
Confidence 446889999999999999999998622 122232 111 11233444444332 1 35
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCH
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL 341 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~ 341 (420)
..|++||++|.+ +...++.++..+++ +..++.+|++|+.++.+-+.+++ |+ ..++|.+|+.
T Consensus 91 ~KvvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 579999999887 45566666666664 56788888888888999999988 77 7899999988
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcc
Q 014712 342 ESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTG 375 (420)
Q Consensus 342 ~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sg 375 (420)
++-.+.+... +..++ ....+|..+.| .|
T Consensus 152 ~~l~~~l~~~----~~~~~-~a~~~a~~~~~-~~ 179 (299)
T PRK07132 152 QKILAKLLSK----NKEKE-YNWFYAYIFSN-FE 179 (299)
T ss_pred HHHHHHHHHc----CCChh-HHHHHHHHcCC-HH
Confidence 8766555432 33222 23445556665 44
No 259
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.33 E-value=2.7e-06 Score=76.82 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=73.4
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-------------EEEEecchhhhhh----------hh--hhHHHHH
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------------FIRVIGSELVQKY----------VG--EGARMVR 251 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~-------------~i~v~~~~l~~~~----------~g--~~~~~v~ 251 (420)
+.+.++.-+.|.||+|+|||||.++++...|.. +.++...++...+ .. .+....+
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 345677789999999999999999997432211 1111110111110 00 0122334
Q ss_pred HHHHHHHhCC--CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCc
Q 014712 252 ELFQMARSKK--ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329 (420)
Q Consensus 252 ~~f~~a~~~~--p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gR 329 (420)
-.+..+.... |.++++||- ..+-+......+.+++..+. ..+..||++|+.++.+ + .
T Consensus 96 l~laral~~~~~p~llLlDEP----------t~~LD~~~~~~l~~~l~~~~----~~g~tvIivSH~~~~~-----~--~ 154 (176)
T cd03238 96 VKLASELFSEPPGTLFILDEP----------STGLHQQDINQLLEVIKGLI----DLGNTVILIEHNLDVL-----S--S 154 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHH-----H--h
Confidence 4556666677 999999994 33467888888888887663 2355688888876532 2 4
Q ss_pred ccEEEEcc
Q 014712 330 LDRKVEFG 337 (420)
Q Consensus 330 fd~~i~~~ 337 (420)
+|+++.+.
T Consensus 155 ~d~i~~l~ 162 (176)
T cd03238 155 ADWIIDFG 162 (176)
T ss_pred CCEEEEEC
Confidence 55666664
No 260
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.32 E-value=7.5e-06 Score=84.31 Aligned_cols=154 Identities=21% Similarity=0.331 Sum_probs=93.5
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG 246 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~ 246 (420)
+.|.+.....+...+... ......++++|.+||||+++|+++.... +.+|+.++|..+.......
T Consensus 141 lig~s~~~~~~~~~i~~~-----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~- 208 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALV-----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES- 208 (441)
T ss_pred eEecCHHHHHHHHHHhhc-----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH-
Confidence 556666666555544431 1234679999999999999999998754 5799999998764322111
Q ss_pred HHHHHHHHHH---------------HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--Cc----CC
Q 014712 247 ARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD----AR 305 (420)
Q Consensus 247 ~~~v~~~f~~---------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~----~~ 305 (420)
.+|.. ......++||||||+.+ +...|..+..++..-.- .. ..
T Consensus 209 -----~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (441)
T PRK10365 209 -----ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTIS 272 (441)
T ss_pred -----HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceee
Confidence 11110 01223568999999998 67788888887764221 00 01
Q ss_pred CCeEEEEEeCCCCCCCccccCcCccc-------EEEEccCCCHHHHHH----HHHHHHhc
Q 014712 306 GNIKVLMATNRPDTLDPALLRPGRLD-------RKVEFGLPDLESRTQ----IFKIHTRT 354 (420)
Q Consensus 306 ~~v~vI~ttn~~~~ld~al~r~gRfd-------~~i~~~~Pd~~~R~~----Il~~~~~~ 354 (420)
.++.+|++|+..- .....+|+|. ..+.+..|...+|.+ +++.++..
T Consensus 273 ~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~ 329 (441)
T PRK10365 273 VDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQR 329 (441)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHH
Confidence 2567888887642 1122233332 246667777776654 55555443
No 261
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.32 E-value=7.5e-06 Score=73.93 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=61.5
Q ss_pred ceeeCCCCChHHHHHHHHHHh---cCCcEEEEecchhhhhhh------h-----------------------hhH-----
Q 014712 205 VLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQKYV------G-----------------------EGA----- 247 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~---~~~~~i~v~~~~l~~~~~------g-----------------------~~~----- 247 (420)
++++||||||||+++..++.. -|.+.++++..+-..... | ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 689999999999999988764 366666666532211100 0 000
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 248 ~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.....+...+....|.+++||++..+... ........+..++..+.. .++.+|++++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 11233444445678899999999887431 113334445566665542 3566777777544
No 262
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.32 E-value=4.7e-06 Score=76.32 Aligned_cols=106 Identities=23% Similarity=0.381 Sum_probs=71.4
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh--cCCcEEEEecchhh------------------------------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR--TDACFIRVIGSELV------------------------------------ 239 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~--~~~~~i~v~~~~l~------------------------------------ 239 (420)
.+..+.-+.+.||+|||||||.|++..- ...-.+.+++....
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 3456677999999999999999999862 23334444442110
Q ss_pred ---------------------------hhhhh--hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHH
Q 014712 240 ---------------------------QKYVG--EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (420)
Q Consensus 240 ---------------------------~~~~g--~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (420)
..|.. .+.+..|-.+.+|....|.++++||. ++.-|++...
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP----------TSALDPElv~ 173 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP----------TSALDPELVG 173 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC----------cccCCHHHHH
Confidence 00111 12334455667777889999999994 4456899998
Q ss_pred HHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 291 TMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
..+..+..+. ..+...|+.|+..
T Consensus 174 EVL~vm~~LA----~eGmTMivVTHEM 196 (240)
T COG1126 174 EVLDVMKDLA----EEGMTMIIVTHEM 196 (240)
T ss_pred HHHHHHHHHH----HcCCeEEEEechh
Confidence 8888888875 4556777777753
No 263
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.32 E-value=4.8e-06 Score=77.53 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCc
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gR 329 (420)
.|-.+.+|....|.+|+.|| ++..-+.+....++.++.++. ...+..||+.|+.+. +.. +
T Consensus 149 QRVAIARAL~~~P~iilADE----------PTgnLD~~t~~~V~~ll~~~~---~~~g~tii~VTHd~~-----lA~--~ 208 (226)
T COG1136 149 QRVAIARALINNPKIILADE----------PTGNLDSKTAKEVLELLRELN---KERGKTIIMVTHDPE-----LAK--Y 208 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeC----------ccccCChHHHHHHHHHHHHHH---HhcCCEEEEEcCCHH-----HHH--h
Confidence 34556667778999999999 455567888888888888764 234667999999553 444 7
Q ss_pred ccEEEEcc
Q 014712 330 LDRKVEFG 337 (420)
Q Consensus 330 fd~~i~~~ 337 (420)
+|++|.+.
T Consensus 209 ~dr~i~l~ 216 (226)
T COG1136 209 ADRVIELK 216 (226)
T ss_pred CCEEEEEe
Confidence 77777764
No 264
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.31 E-value=4.8e-06 Score=75.15 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=71.5
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhhh------h---h-----------h-----h--hhH
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ------K---Y-----------V-----G--EGA 247 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~------~---~-----------~-----g--~~~ 247 (420)
+.+.++..+.|.||+|+|||||+++++.... .--+.+++..+.. . | + . .+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 4567788899999999999999999998642 1223333322110 0 0 0 0 012
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 248 ~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
...+-.+..|....|.++++||- ..+-+......+.+++..+. . +..+|++|+.++.+
T Consensus 103 ~~qrv~laral~~~p~~lllDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEP----------TVGLDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECC----------cccCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 23344566667789999999994 34567888888888888763 2 35688888876544
No 265
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.31 E-value=4.2e-06 Score=86.40 Aligned_cols=114 Identities=21% Similarity=0.320 Sum_probs=70.5
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhh--------------hHHHHHHHHHHHHhC
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE--------------GARMVRELFQMARSK 260 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~--------------~~~~v~~~f~~a~~~ 260 (420)
|+.+...++|+|+||+|||+|+..+|... +...+++++.+........ .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67788889999999999999999998754 6678888876543322110 111234556666667
Q ss_pred CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
.|.+|+||.+..+.....+...+........+..|..... ..++.+|++++
T Consensus 156 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak----~~~itvilv~h 206 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK----QRGIAVFLVGH 206 (446)
T ss_pred CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH----HcCCEEEEEee
Confidence 8999999999988654322211222222222333433332 44666777654
No 266
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.31 E-value=6.4e-06 Score=78.59 Aligned_cols=77 Identities=25% Similarity=0.320 Sum_probs=52.7
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC------------CCCCCccccCcCc
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 329 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~------------~~~ld~al~r~gR 329 (420)
|.||||||++.| +-+....+...+.. .-.-++|++||+ |.-++-.|+. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~------d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN------DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh------ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 678888888877 44455555444432 222357777774 4667777776 6
Q ss_pred ccEEEEccCCCHHHHHHHHHHHHhcCCCC
Q 014712 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCE 358 (420)
Q Consensus 330 fd~~i~~~~Pd~~~R~~Il~~~~~~~~~~ 358 (420)
. .+|.-.+++.++-..||++.+....+.
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~ 377 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVE 377 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccc
Confidence 5 577778889999999999999765554
No 267
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.30 E-value=4.1e-06 Score=79.25 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 247 ~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.+..|-++.+|....|.+++||| +..+-|...+..+.++|.++. ..+..|++.|++...+
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~----~eg~tIl~vtHDL~~v 202 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELR----QEGKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCcHHh
Confidence 33445667778889999999999 566778999999999999986 3378899999987543
No 268
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.30 E-value=4.8e-06 Score=74.82 Aligned_cols=108 Identities=24% Similarity=0.378 Sum_probs=71.1
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhh--------hh--h-----------h----hhhHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV--------QK--Y-----------V----GEGARMV 250 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~--------~~--~-----------~----g~~~~~v 250 (420)
.+.++..+.|.||+|+|||+|+++++.... .--+.+++.++. .. | + -.+....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHH
Confidence 456677899999999999999999998642 112223322110 00 0 0 0122334
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+-.+..|....|.++++||- ..+-+......+.+++..+. ..+..+|++|+..+.
T Consensus 104 rv~la~al~~~p~~lllDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~ 158 (173)
T cd03246 104 RLGLARALYGNPRILVLDEP----------NSHLDVEGERALNQAIAALK----AAGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHHhcCCCEEEEECC----------ccccCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHH
Confidence 55666777789999999994 44568888888888888764 224578888887653
No 269
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=6.7e-06 Score=73.69 Aligned_cols=109 Identities=28% Similarity=0.381 Sum_probs=71.1
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhhh-------h---h-----------h----hhhHHH
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ-------K---Y-----------V----GEGARM 249 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~-------~---~-----------~----g~~~~~ 249 (420)
+.+.++..+.|.||+|+|||||++++++... .--+.+++..+.. . + + -.+...
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 3466788899999999999999999999642 1112233221100 0 0 0 011222
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.+-.+..+....|.++++|| +..+-+......+.+++.++. . +..+|++|+.++.+
T Consensus 103 ~rl~la~al~~~p~llllDE----------P~~gLD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 158 (171)
T cd03228 103 QRIAIARALLRDPPILILDE----------ATSALDPETEALILEALRALA----K-GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHhcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 33445566668899999999 444567888888888888763 2 36788889877654
No 270
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.29 E-value=5.3e-06 Score=83.49 Aligned_cols=114 Identities=21% Similarity=0.338 Sum_probs=69.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh------hh--------hHHHHHHHHHHHHhC
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------GE--------GARMVRELFQMARSK 260 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~------g~--------~~~~v~~~f~~a~~~ 260 (420)
|+.+...++|+|+||+|||+|+..+|... +...+++++.+-..... +. .+..+..++..+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 67788889999999999999999998754 45677777654322211 10 112234556666677
Q ss_pred CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
.|.+|+||+|..+.....+...+....+...+..|.+... ..++.+|++.+
T Consensus 158 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak----~~~itvilvgh 208 (372)
T cd01121 158 KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK----ERNIPIFIVGH 208 (372)
T ss_pred CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH----HcCCeEEEEee
Confidence 8999999999988643322111222222233333333332 44566666654
No 271
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.28 E-value=8.9e-06 Score=71.10 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.8
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
.+..++++|+||+||||++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34568999999999999999999865
No 272
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.28 E-value=5.5e-06 Score=81.88 Aligned_cols=138 Identities=18% Similarity=0.304 Sum_probs=77.3
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcE--EEEecchhhhhhhhh--------h-------H----HHHHHHHHHHH
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACF--IRVIGSELVQKYVGE--------G-------A----RMVRELFQMAR 258 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~--i~v~~~~l~~~~~g~--------~-------~----~~v~~~f~~a~ 258 (420)
.+|+|++|||.-|||||+|.-.+...+.... -+|...+++...-.. + . .-+.-+-.. .
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~e-I 190 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADE-I 190 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHH-H
Confidence 4699999999999999999998886542210 111122222111000 0 0 000011111 1
Q ss_pred hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC-CCCCccccCcCcccEEEEcc
Q 014712 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DTLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~-~~ld~al~r~gRfd~~i~~~ 337 (420)
....++|++||+..- +-.-.-.|.+|+..+- ..++++++|+|+. +.|-..=+. +...+|
T Consensus 191 a~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-----R~~F~P 250 (467)
T KOG2383|consen 191 AEEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-----RENFIP 250 (467)
T ss_pred hhhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh-----hhhhhh
Confidence 123469999998653 2333344556666654 4588999999984 544432222 222233
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCccHH
Q 014712 338 LPDLESRTQIFKIHTRTMNCERDIRFE 364 (420)
Q Consensus 338 ~Pd~~~R~~Il~~~~~~~~~~~~v~l~ 364 (420)
. ..+|+.++.-..+...+|+.
T Consensus 251 f------I~~L~~rc~vi~ldS~vDYR 271 (467)
T KOG2383|consen 251 F------IALLEERCKVIQLDSGVDYR 271 (467)
T ss_pred H------HHHHHHhheEEecCCccchh
Confidence 2 35777888777777778887
No 273
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.23 E-value=3.5e-06 Score=69.61 Aligned_cols=23 Identities=43% Similarity=0.803 Sum_probs=20.6
Q ss_pred ceeeCCCCChHHHHHHHHHHhcC
Q 014712 205 VLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~~ 227 (420)
|+||||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999998654
No 274
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=6.2e-06 Score=72.72 Aligned_cols=111 Identities=24% Similarity=0.396 Sum_probs=71.1
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhhh-------hhhh-----hhHHHHHHHHHHHHhCCC
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ-------KYVG-----EGARMVRELFQMARSKKA 262 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~-------~~~g-----~~~~~v~~~f~~a~~~~p 262 (420)
+.+.++..+.|.||+|+|||+|+++++.... .--+.+++..... ..++ .+....+-.+..+....|
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC
Confidence 3456777899999999999999999998653 2223444332211 0000 112233444556666778
Q ss_pred cEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
.++++||... +.+......+.+++.++.. . +..+|++|+..+.+.
T Consensus 100 ~i~ilDEp~~----------~lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 100 DLLLLDEPTS----------GLDPASRERLLELLRELAE---E-GRTVIIVTHDPELAE 144 (157)
T ss_pred CEEEEeCCCc----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 9999999543 4567777888888876531 2 356888888765443
No 275
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.21 E-value=8.2e-06 Score=71.12 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=67.6
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecch---hhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSE---LVQKYVGEGARMVRELFQMARSKKACIVFFDEVD 271 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~---l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD 271 (420)
+.+.++..+.|.||+|+|||||++++++.... --+.+++.. +... . .+....+-.+..+....|.++++||-.
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-l-S~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-L-SGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-C-CHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 34567788999999999999999999996521 112222210 0000 1 112233445566667889999999943
Q ss_pred cccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 272 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 272 ~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
.+-+......+.+++.++. ..+|++|+.++.
T Consensus 99 ----------~~LD~~~~~~l~~~l~~~~-------~til~~th~~~~ 129 (144)
T cd03221 99 ----------NHLDLESIEALEEALKEYP-------GTVILVSHDRYF 129 (144)
T ss_pred ----------cCCCHHHHHHHHHHHHHcC-------CEEEEEECCHHH
Confidence 3457777888888887651 368888887653
No 276
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.21 E-value=1.1e-05 Score=72.80 Aligned_cols=108 Identities=20% Similarity=0.150 Sum_probs=69.4
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchh---hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCccc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSEL---VQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l---~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~ 272 (420)
.+.++..+.|.||+|+|||||++.++.... .--+.+++..+ .+...-.+....+-.+..+....|.++++||-
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEP-- 98 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEP-- 98 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECC--
Confidence 346677899999999999999999998642 22233332111 01100112223445566667788999999994
Q ss_pred ccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.++.+......+.+++.++. ..++..+|++|+..+
T Consensus 99 --------ts~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~ 133 (177)
T cd03222 99 --------SAYLDIEQRLNAARAIRRLS---EEGKKTALVVEHDLA 133 (177)
T ss_pred --------cccCCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHH
Confidence 44567888888888887653 123356888888764
No 277
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.19 E-value=2e-05 Score=74.26 Aligned_cols=110 Identities=15% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh-------------------------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------------------------------- 243 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~------------------------------- 243 (420)
|+++...+++.|+||||||+++..++... +...+++...+-.....
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 56777789999999999999976554432 55666665432111100
Q ss_pred hhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 244 GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 244 g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+....+..+...+....|.++++|++-.+... ..++...+.+.+++..+.. . +..+++|++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~~---~-g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRISS---L-NKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHHh---C-CCEEEEEeccc
Confidence 001233344455555567899999999876421 1233444566667665532 2 34566676643
No 278
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.18 E-value=1e-05 Score=72.64 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
|-.+..|.-+.|.+|+-|| ++..-+++....++++++++. ..+..|+++|+..+.++
T Consensus 145 RvaIARAiV~~P~vLlADE----------PTGNLDp~~s~~im~lfeein----r~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 145 RVAIARAIVNQPAVLLADE----------PTGNLDPDLSWEIMRLFEEIN----RLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHccCCCeEeecC----------CCCCCChHHHHHHHHHHHHHh----hcCcEEEEEeccHHHHH
Confidence 4445566678999999999 555678999999999999886 55778999998765444
No 279
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.18 E-value=1e-05 Score=87.64 Aligned_cols=120 Identities=26% Similarity=0.312 Sum_probs=79.2
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhh-----------------------------------
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV----------------------------------- 239 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~----------------------------------- 239 (420)
+.++++..+.+.|++|||||||+|.+.+-.. .--+.+++.++.
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC
Confidence 3456777799999999999999999998542 122333322210
Q ss_pred -------------------h-------hhhhh------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHH
Q 014712 240 -------------------Q-------KYVGE------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNE 287 (420)
Q Consensus 240 -------------------~-------~~~g~------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 287 (420)
. ..+|+ +.+..|-++.+|.-.+|.||++||.-+ +-|.+
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTS----------aLD~~ 643 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATS----------ALDPE 643 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCccc----------ccCHh
Confidence 0 00111 334445566667778999999999543 45788
Q ss_pred HHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccC
Q 014712 288 VQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 288 ~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~ 338 (420)
.++.+.+-|.++. .+..+|..|+++..+. ++|+++.+..
T Consensus 644 sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti~-------~adrIiVl~~ 682 (709)
T COG2274 644 TEAIILQNLLQIL-----QGRTVIIIAHRLSTIR-------SADRIIVLDQ 682 (709)
T ss_pred HHHHHHHHHHHHh-----cCCeEEEEEccchHhh-------hccEEEEccC
Confidence 8888888887764 3456888889876544 6667666653
No 280
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.17 E-value=9.4e-06 Score=74.78 Aligned_cols=109 Identities=16% Similarity=0.291 Sum_probs=62.5
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHh-----cCCcE-------------EEEecchhhh----hhhhhhHHHHHHHH
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANR-----TDACF-------------IRVIGSELVQ----KYVGEGARMVRELF 254 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~-----~~~~~-------------i~v~~~~l~~----~~~g~~~~~v~~~f 254 (420)
+.+...+.++|.||+|+||||+++.++.. .|.++ ..+...+-.. .+. .....+..++
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL 98 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIV 98 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHH
Confidence 34455567899999999999999999863 23321 1111111100 111 1123455666
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHH-HHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR-TMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~-~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
..+....|.++++||.-. +.+..... .+..++..+. ..+..+|++|+..+.+
T Consensus 99 ~~~~~~~p~llllDEp~~----------glD~~~~~~l~~~ll~~l~----~~~~tiiivTH~~~~~ 151 (199)
T cd03283 99 EKAKKGEPVLFLLDEIFK----------GTNSRERQAASAAVLKFLK----NKNTIGIISTHDLELA 151 (199)
T ss_pred HhccCCCCeEEEEecccC----------CCCHHHHHHHHHHHHHHHH----HCCCEEEEEcCcHHHH
Confidence 655545889999999643 23443333 3344555553 2356788899876543
No 281
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.17 E-value=2.1e-05 Score=70.21 Aligned_cols=105 Identities=29% Similarity=0.379 Sum_probs=67.8
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEec--------ch--hh-----hh----hh--hhhHHHHHHH
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIG--------SE--LV-----QK----YV--GEGARMVREL 253 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~--------~~--l~-----~~----~~--g~~~~~v~~~ 253 (420)
+.+.++..+.|.||+|+|||||+++++..... --+.+++ .+ +. .. .. -.+....+-.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHH
Confidence 34567788999999999999999999986421 1111111 00 10 00 00 0122334455
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.++++||- ..+-+...+..+.+++..+ +..+|++|++++
T Consensus 102 laral~~~p~~lllDEP----------t~~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 102 FARLLLHKPKFVFLDEA----------TSALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHHcCCCEEEEECC----------ccccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 66667789999999994 3456788888888888764 246888888764
No 282
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.17 E-value=1.1e-05 Score=72.90 Aligned_cols=111 Identities=25% Similarity=0.324 Sum_probs=71.0
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhhh-------h---h-----------------hh--h
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ-------K---Y-----------------VG--E 245 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~-------~---~-----------------~g--~ 245 (420)
+.+.++..+.|.||+|+|||||++.++.... .--+.+++..+.. . | .. .
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3456778899999999999999999998642 2223333322110 0 0 00 0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 246 ~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+....+-.+..+....|.++++||- ..+-+......+.+++..+.. ..+..+|++|+.++.+
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP----------~~~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEP----------TSHLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC----------ccCCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 1222334455566688999999994 445678888888888887641 2245788888876543
No 283
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.16 E-value=9.1e-06 Score=79.99 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=70.0
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEecchhhhh----------------hhhhhHHHHHHHHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK----------------YVGEGARMVRELFQMAR 258 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~~~l~~~----------------~~g~~~~~v~~~f~~a~ 258 (420)
|++....+.+|||||||||+||-.++.. .+...++++..+-... .....+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 6777788999999999999999988754 3667777766432111 01122333333334456
Q ss_pred hCCCcEEEecCcccccCC-ccCCCCCC-CH-HHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 259 SKKACIVFFDEVDAIGGA-RFDDGVGG-DN-EVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~-r~~~~~~~-~~-~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
...+++|+||-+-++.+. ..+...+. .. ...+.+.+.+..+...-...++.+|++..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 678899999999998753 11111111 11 11233445554444433456777777654
No 284
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.15 E-value=1e-05 Score=75.66 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=65.8
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh----hhh-------------------hhHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YVG-------------------EGARMVR 251 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~----~~g-------------------~~~~~v~ 251 (420)
|+..+..++++|+||+|||++|..+|... +...++++...+... ..+ +....+.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 67777889999999999999999998743 677777776622110 010 0011122
Q ss_pred HHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 252 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
.+..... ..+.+|+||-+.++....... ........+.+.+++..+..+....++.+|+|...
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~ 161 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQV 161 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccc
Confidence 2222222 678899999999886432110 01122223344444333332223457777776553
No 285
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.15 E-value=1e-05 Score=79.59 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=69.8
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh----------------hhhhhHHHHHHHHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----------------YVGEGARMVRELFQMAR 258 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~----------------~~g~~~~~v~~~f~~a~ 258 (420)
|+++...++++||||||||+||..++... +...++++..+.... .....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67788889999999999999988776543 667777765432211 01122333333444455
Q ss_pred hCCCcEEEecCcccccCCc-cCCCCCCC-H-HHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 259 SKKACIVFFDEVDAIGGAR-FDDGVGGD-N-EVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r-~~~~~~~~-~-~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
...+.+|+||-+.++.+.. .+...+.. . ...+.+.+.+..+...-...++.+|+|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 6788999999999987531 11111111 1 12233334444444433466777877754
No 286
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.13 E-value=1.4e-05 Score=75.90 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+-++.+|....|.||++|| +.+.-|-..|-.+++++..+. ...+..+|++.+.+
T Consensus 145 Qrv~iArALaQ~~~iLLLDE----------PTs~LDi~~Q~evl~ll~~l~---~~~~~tvv~vlHDl 199 (258)
T COG1120 145 QRVLIARALAQETPILLLDE----------PTSHLDIAHQIEVLELLRDLN---REKGLTVVMVLHDL 199 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCC----------CccccCHHHHHHHHHHHHHHH---HhcCCEEEEEecCH
Confidence 34556677778899999999 445567777888888888775 24567899998865
No 287
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=1.7e-05 Score=71.26 Aligned_cols=108 Identities=22% Similarity=0.333 Sum_probs=69.8
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhh-----------------hhhhh---------hhHH
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV-----------------QKYVG---------EGAR 248 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~-----------------~~~~g---------~~~~ 248 (420)
+.+.++..+.|.||+|+|||||++.++.... .--+.+++..+. ..+.+ .+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 3456777899999999999999999998541 111222221110 00000 1222
Q ss_pred HHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 249 ~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
..+-.+..|....|.++++||- ..+-+......+.+++.++.. . +..+|++|+.++
T Consensus 101 ~qrv~laral~~~p~illlDEP----------t~~LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEP----------TSGLDPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCC----------ccCCCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 3344566677789999999994 445678888888888887641 2 456888888764
No 288
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.11 E-value=7.1e-06 Score=76.47 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=56.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh----------hhhhhhhhHHHHHHHHHHHH--hCCCcEEEecC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL----------VQKYVGEGARMVRELFQMAR--SKKACIVFFDE 269 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l----------~~~~~g~~~~~v~~~f~~a~--~~~p~Il~iDE 269 (420)
|..+||||+||+|||++|+.++.. ..++..+++.- ........-..+.+.+.... ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 566999999999999999999742 12222222110 00000011112222222222 35578999999
Q ss_pred cccccC------Cc-cCC---CCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 270 VDAIGG------AR-FDD---GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 270 iD~l~~------~r-~~~---~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
++.+.. .| ..+ ...+-......+..++..+.. .+.-||++++.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~----~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE----SNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh----CCCcEEEEEee
Confidence 998743 11 111 112334455666667766653 23345555554
No 289
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.10 E-value=1.9e-05 Score=76.56 Aligned_cols=161 Identities=19% Similarity=0.319 Sum_probs=101.9
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHH---hcCCcEEEEecchhhhh----
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN---RTDACFIRVIGSELVQK---- 241 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~---~~~~~~i~v~~~~l~~~---- 241 (420)
.+.|..+..+.+.+++.....+ ....++++.||.|+|||.+...... +.+-+|+.+........
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 4778888888898888764444 4567899999999999997665433 56777766543322111
Q ss_pred -----------------hhhhhHHHHHHHHHHHHh-----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHh
Q 014712 242 -----------------YVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL 299 (420)
Q Consensus 242 -----------------~~g~~~~~v~~~f~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 299 (420)
..|.....+..++..... +.+.|.++||||..++ ..-|..++.+++.-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------h~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------HSRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------chhhHHHHHHHHHH
Confidence 011122222222322222 2344666789998854 34466677777755
Q ss_pred cCCcCCCCeEEEEEeCCCCC---CCccccCcCcccEE-EEccCC-CHHHHHHHHHHHH
Q 014712 300 DGFDARGNIKVLMATNRPDT---LDPALLRPGRLDRK-VEFGLP-DLESRTQIFKIHT 352 (420)
Q Consensus 300 ~~~~~~~~v~vI~ttn~~~~---ld~al~r~gRfd~~-i~~~~P-d~~~R~~Il~~~~ 352 (420)
+ ..+..+.||+.|.+.+. |.....+ ||... |.+.++ ...+-.++++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 4 23567999998887654 4567777 99765 665543 5677777777666
No 290
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.10 E-value=1.9e-05 Score=73.65 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.|-.+..|....|.+|++||.-. .-|..+|..++.++..+. ...+..+|+.|+...
T Consensus 148 QRiaIARAL~~~PklLIlDEptS----------aLD~siQa~IlnlL~~l~---~~~~lt~l~IsHdl~ 203 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTS----------ALDVSVQAQILNLLLELK---KERGLTYLFISHDLA 203 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchh----------hhcHHHHHHHHHHHHHHH---HhcCceEEEEeCcHH
Confidence 34455666778899999999543 357889999999988875 345677888888654
No 291
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.10 E-value=4.8e-05 Score=77.46 Aligned_cols=128 Identities=13% Similarity=0.161 Sum_probs=77.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r 277 (420)
...++ .++|+||.+|||||+++.+.......++.++..+.......- ......+..+.....+.||||||+.+
T Consensus 34 ~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---- 106 (398)
T COG1373 34 DLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---- 106 (398)
T ss_pred ccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----
Confidence 33444 799999999999999999888876657777766664433221 11112222222224469999999986
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHH
Q 014712 278 FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (420)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~ 346 (420)
+++++.+..+.+... . .+++.+++...-....+-.-+||. ..+.+.+.+..+...
T Consensus 107 --------~~W~~~lk~l~d~~~----~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --------PDWERALKYLYDRGN----L-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --------hhHHHHHHHHHcccc----c-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 567777777765421 1 233333222222222222235685 677777788888765
No 292
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.09 E-value=7.4e-06 Score=81.39 Aligned_cols=161 Identities=22% Similarity=0.240 Sum_probs=81.2
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh-----------
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL----------- 238 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l----------- 238 (420)
|.|.+.+|..+--.+........ -........-++||.|.||||||.|.+.++.-....+ ++++...
T Consensus 26 i~g~~~iK~aill~L~~~~~~~~-~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 26 IYGHEDIKKAILLQLFGGVEKND-PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTT-HHHHHHHCCCCTT--SCCC-CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECC
T ss_pred CcCcHHHHHHHHHHHHhcccccc-ccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceecc
Confidence 77888766655432222111100 0000122345899999999999999998876543332 3332211
Q ss_pred ---hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc------CC--cCCCC
Q 014712 239 ---VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGN 307 (420)
Q Consensus 239 ---~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~ 307 (420)
.+.|.-+.. .+-.| ...|++|||+|.+ +.+....+.+.+++-. |+ .-+.+
T Consensus 104 d~~~~~~~leaG-----alvla---d~GiccIDe~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 104 DPVTGEWVLEAG-----ALVLA---DGGICCIDEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp CGGTSSECEEE------HHHHC---TTSEEEECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred ccccceeEEeCC-----chhcc---cCceeeecccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccch
Confidence 111111111 22222 3359999999998 3445677777776521 10 11346
Q ss_pred eEEEEEeCCCC-------------CCCccccCcCcccEEEEc-cCCCHHHHHHHHHHHHh
Q 014712 308 IKVLMATNRPD-------------TLDPALLRPGRLDRKVEF-GLPDLESRTQIFKIHTR 353 (420)
Q Consensus 308 v~vI~ttn~~~-------------~ld~al~r~gRfd~~i~~-~~Pd~~~R~~Il~~~~~ 353 (420)
..|++++|... .+++.|++ |||.++.+ ..|+.+.-..+.++.++
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 78999999654 47789999 99998776 66776655555555543
No 293
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.08 E-value=2.7e-05 Score=72.42 Aligned_cols=118 Identities=23% Similarity=0.290 Sum_probs=66.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh----hhh-------------------hhHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YVG-------------------EGARMVR 251 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~----~~g-------------------~~~~~v~ 251 (420)
|+.++..++++|+||||||+++..+|... +.+.++++....... ..+ +....+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 67778889999999999999999998754 556667755321110 000 0011122
Q ss_pred HHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 252 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+..... ..+++|+||-+..+........ .......+.+..++..+..+....++.+|+++...
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~ 158 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVY 158 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCE
Confidence 2222222 3478999999988853211110 01122333444444433333335678888876643
No 294
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.07 E-value=1.9e-05 Score=82.55 Aligned_cols=126 Identities=26% Similarity=0.326 Sum_probs=74.5
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEE-ecchhhhh--hh---hhhHHHHHHHHHHHHhCCCcEEEecCcccccCC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRV-IGSELVQK--YV---GEGARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v-~~~~l~~~--~~---g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~ 276 (420)
-++||+|.||||||.+.+.+++-+....+.- .++.-++. |+ +++.+.+-+--.. ......|-+|||+|++
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGAL-VLSD~GiCCIDEFDKM--- 538 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGAL-VLSDNGICCIDEFDKM--- 538 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcE-EEcCCceEEchhhhhh---
Confidence 5799999999999999999998653322111 11111110 00 0111110000000 1123458899999998
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhc------CC--cCCCCeEEEEEeCCCC-------------CCCccccCcCcccEEEE
Q 014712 277 RFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDRKVE 335 (420)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~gRfd~~i~ 335 (420)
+...+..|.+.+++=. |+ .-+.+..||+++|... .|+|.|++ |||.++-
T Consensus 539 --------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyl 608 (804)
T KOG0478|consen 539 --------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFL 608 (804)
T ss_pred --------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEE
Confidence 4556677777776521 21 1244677999999431 47899999 9998655
Q ss_pred c-cCCCHH
Q 014712 336 F-GLPDLE 342 (420)
Q Consensus 336 ~-~~Pd~~ 342 (420)
+ ..||+.
T Consensus 609 llD~~DE~ 616 (804)
T KOG0478|consen 609 LLDKPDER 616 (804)
T ss_pred EecCcchh
Confidence 4 667765
No 295
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.06 E-value=7.1e-06 Score=85.52 Aligned_cols=128 Identities=25% Similarity=0.391 Sum_probs=84.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc--CCcEEEEecchhhhhhhh-------------hhHHHHHHHHHHHHhCCCcEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSELVQKYVG-------------EGARMVRELFQMARSKKACIVF 266 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~--~~~~i~v~~~~l~~~~~g-------------~~~~~v~~~f~~a~~~~p~Il~ 266 (420)
.-.+++.|.|||||-.+|+++.... ..+|+.++|..+-...++ ...+-.+..++.|.. ..+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccH
Confidence 4579999999999999999998865 578999998755333211 111222223333333 4899
Q ss_pred ecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc-----CCcCCCCeEEEEEeCCCCCCCccccCcCcccE-------EE
Q 014712 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GFDARGNIKVLMATNRPDTLDPALLRPGRLDR-------KV 334 (420)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-----~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~-------~i 334 (420)
+|||..+ .-+.|..|++.|.+-. +....-.|.||++|++.= ..+.+.|||-. .+
T Consensus 413 ldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 9999887 6788999999998732 222223588999999751 23444555532 45
Q ss_pred EccCCCHHHHHH
Q 014712 335 EFGLPDLESRTQ 346 (420)
Q Consensus 335 ~~~~Pd~~~R~~ 346 (420)
.+.+|...+|.+
T Consensus 479 ~i~lP~lr~R~d 490 (606)
T COG3284 479 VITLPPLRERSD 490 (606)
T ss_pred eeccCchhcccc
Confidence 566677766654
No 296
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.05 E-value=3.5e-05 Score=71.26 Aligned_cols=62 Identities=19% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEc
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 336 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~ 336 (420)
+....|.++++|| +..+-+......+.+++.++. ..+..+|++|+..+.++. ++++.+
T Consensus 141 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~--------~~~~~~ 198 (207)
T PRK13539 141 LLVSNRPIWILDE----------PTAALDAAAVALFAELIRAHL----AQGGIVIAATHIPLGLPG--------ARELDL 198 (207)
T ss_pred HHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCchhhcc--------CcEEee
Confidence 4446789999999 444568888888888888763 235678999998876663 355666
Q ss_pred cCCC
Q 014712 337 GLPD 340 (420)
Q Consensus 337 ~~Pd 340 (420)
..|.
T Consensus 199 ~~~~ 202 (207)
T PRK13539 199 GPFA 202 (207)
T ss_pred cCcc
Confidence 5554
No 297
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.04 E-value=5.4e-05 Score=71.32 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=31.7
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEecc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGS 236 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~~ 236 (420)
|++.+..++++|+||||||+++.+++.. .+...++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 7788889999999999999999999764 36666666653
No 298
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=3.9e-05 Score=70.12 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=67.4
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEecchh-----------------hh-----hhh--------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSEL-----------------VQ-----KYV-------- 243 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~~l-----------------~~-----~~~-------- 243 (420)
.+.++..+.|.||+|+|||||++.++... ..--+.+++..+ .. ...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRG 108 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhc
Confidence 45677789999999999999999999732 111122222111 00 000
Q ss_pred hhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 244 GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 244 g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
=.+....+-.+..|....|.++++||- ..+.+......+.+++.++. ..+..+|++|+.++
T Consensus 109 LSgGe~qrv~la~al~~~p~vlllDEP----------~~~LD~~~~~~l~~~l~~~~----~~~~tiiivtH~~~ 169 (192)
T cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEP----------TSGLDSQAAYNIVRFLKKLA----DSGQAILCTIHQPS 169 (192)
T ss_pred CCHHHhHHHHHHHHHhcCCcEEEEeCC----------CcCCCHHHHHHHHHHHHHHH----HcCCEEEEEEcCCh
Confidence 001122233455566678999999994 44567888888888888764 22456888888764
No 299
>PHA00729 NTP-binding motif containing protein
Probab=98.02 E-value=6.2e-06 Score=76.86 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=23.0
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
.+++|+|+|||||||||.++|..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 300
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.02 E-value=3.7e-05 Score=70.41 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=68.6
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc--CC--cEEEEecchh------------------hh-hhh----------
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT--DA--CFIRVIGSEL------------------VQ-KYV---------- 243 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~--~~--~~i~v~~~~l------------------~~-~~~---------- 243 (420)
+.+.++..+.|.||+|+|||+|++.++... .. --+.+++..+ .. ..+
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~ 109 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL 109 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence 345677889999999999999999999865 21 1111211110 00 000
Q ss_pred --hhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 244 --GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 244 --g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
-.+....+-.+..|....|.++++||- .++.+......+.+++.++. ..+..+|++|+.+.
T Consensus 110 ~~LS~G~~qrv~laral~~~p~illlDEP----------~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~ 172 (194)
T cd03213 110 RGLSGGERKRVSIALELVSNPSLLFLDEP----------TSGLDSSSALQVMSLLRRLA----DTGRTIICSIHQPS 172 (194)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCch
Confidence 001222334455566688999999994 44567888888888888764 22456888888654
No 301
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.02 E-value=4.4e-05 Score=79.00 Aligned_cols=114 Identities=19% Similarity=0.267 Sum_probs=68.4
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh------hh--------hHHHHHHHHHHHHhC
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------GE--------GARMVRELFQMARSK 260 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~------g~--------~~~~v~~~f~~a~~~ 260 (420)
|+.+...++|+|+||+|||+|+..++... +.+.+++++.+-..... +- .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67888889999999999999999997754 45677887654432211 00 011233445555667
Q ss_pred CCcEEEecCcccccCCccCCCCCCCHH-HHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 261 KACIVFFDEVDAIGGARFDDGVGGDNE-VQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~-~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
.|.+|+||.|..+.....+.. .++.. ....+..|..... ..++.++++++.
T Consensus 170 ~~~~vVIDSIq~l~~~~~~~~-~g~~~q~r~~~~~L~~~ak----~~giTvllt~hv 221 (454)
T TIGR00416 170 NPQACVIDSIQTLYSPDISSA-PGSVSQVRECTAELMRLAK----TRGIAIFIVGHV 221 (454)
T ss_pred CCcEEEEecchhhcccccccC-CCCHHHHHHHHHHHHHHHH----HhCCEEEEEecc
Confidence 899999999998754321111 12222 2222233333222 456677777653
No 302
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.00 E-value=3.5e-05 Score=70.91 Aligned_cols=108 Identities=22% Similarity=0.279 Sum_probs=69.4
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEecchhh-------------------------------hh
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELV-------------------------------QK 241 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~~l~-------------------------------~~ 241 (420)
+.+.++..+.|.||+|+|||||+++++... ..--+.+++.++. ..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence 345778889999999999999999999862 1112233222110 00
Q ss_pred hhh--hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 242 YVG--EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 242 ~~g--~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
... .+....+-.+..+....|.++++|| +..+-+......+.+++.++. ..+..+|++|+.++
T Consensus 101 ~~~~LS~G~~qrv~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~L~~~~----~~~~tiii~sh~~~ 165 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLLLEPDLAILDE----------PDSGLDIDALRLVAEVINKLR----EEGKSVLIITHYQR 165 (200)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHH
Confidence 000 0122233445556668899999999 444567888888888888763 12456788888765
No 303
>PF14516 AAA_35: AAA-like domain
Probab=98.00 E-value=0.00024 Score=70.67 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=91.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhh-------------------------------h
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE-------------------------------G 246 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~-------------------------------~ 246 (420)
++..+.++||..+|||+|...+.+.+ +...+.+++..+-...... .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 56779999999999999999887654 6677777765432110000 0
Q ss_pred HHHHHHHHHH---HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC----CcCCCCeEEEEEeCCCCC
Q 014712 247 ARMVRELFQM---ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG----FDARGNIKVLMATNRPDT 319 (420)
Q Consensus 247 ~~~v~~~f~~---a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~----~~~~~~v~vI~ttn~~~~ 319 (420)
.......|.. .....|-||+|||+|.+... +....-++.+|..... .....++.+|++......
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------PQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------cchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 0111222322 12257889999999999642 2222333333333221 111234555555443322
Q ss_pred CCccc-cCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcc
Q 014712 320 LDPAL-LRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTG 375 (420)
Q Consensus 320 ld~al-~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sg 375 (420)
+.... .+|--+...+.++.-+.++-..+++.|-.. ..... ++.|-..|.|.+.
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGGHPY 234 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCCCHH
Confidence 22222 233334457778877888888888777433 22222 7777777777664
No 304
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=4.3e-05 Score=68.95 Aligned_cols=110 Identities=25% Similarity=0.350 Sum_probs=70.6
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecchhh--------------------hhh----h-------
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV--------------------QKY----V------- 243 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~--------------------~~~----~------- 243 (420)
+.+.++..+.|.||+|+|||||+++++..... --+.+++..+. ..+ +
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 34567778999999999999999999985421 11222221100 000 0
Q ss_pred hhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 244 GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 244 g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
-.+....+-.+..|....|.++++|| +..+-|...+..+.+++.++.. ..+..+|++|+.++.
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDE----------P~~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~ 163 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDE----------PTSALDPITRREVRALLKSLQA---QLGITVVLVTHDLDE 163 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 01123334456667778899999999 4456788888999998887641 224568888887653
No 305
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.99 E-value=7e-05 Score=68.53 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
|....|.++++||-. .+-+......+.+++.... ..+..+|++|+.++.+.
T Consensus 137 al~~~p~~lllDEP~----------~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 137 LIACQSDLWLLDEVE----------TNLSKENRDLLNNLIVMKA----NSGGIVLLSSHLESSIK 187 (195)
T ss_pred HHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCccccc
Confidence 444678999999943 3467778888888886542 23457888998876554
No 306
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.98 E-value=4.9e-05 Score=70.69 Aligned_cols=51 Identities=20% Similarity=0.362 Sum_probs=37.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.++++|| +.++-|......+.+++.++.. ..+..||++|+.++.+
T Consensus 154 al~~~p~lllLDE----------P~~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~ 204 (218)
T cd03255 154 ALANDPKIILADE----------PTGNLDSETGKEVMELLRELNK---EAGTTIVVVTHDPELA 204 (218)
T ss_pred HHccCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH---hcCCeEEEEECCHHHH
Confidence 3446789999999 4456688888899998887641 2356789999876543
No 307
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.97 E-value=3.4e-05 Score=69.86 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=68.2
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchh-------------------------hh-hhhh----
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSEL-------------------------VQ-KYVG---- 244 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l-------------------------~~-~~~g---- 244 (420)
+.+.++..+.|.||+|+|||||++.++.... .--+.+++.++ .. ..+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 3456777899999999999999999998642 11112221110 00 0000
Q ss_pred -----hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 245 -----EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 245 -----~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.+....+-.+..|....|.++++|| +..+-+......+.+++..+. ..+..+|++|+..+
T Consensus 101 ~~~~LS~G~~qrl~la~al~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~ 165 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWLARDPRVLILDE----------PTRGVDVGAKAEIYRLIRELA----DAGKAVLLISSELD 165 (182)
T ss_pred HHhhcCHHHHHHHHHHHHHccCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 0111123345556668899999999 444568888888988888764 12456888888764
No 308
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.97 E-value=3e-05 Score=78.92 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
|-.+.+|..+.|.++++||= .++-|.+...++..-+..+. ..+.++|..|++|..|.
T Consensus 480 RIaLARAlYG~P~lvVLDEP----------NsNLD~~GE~AL~~Ai~~~k----~rG~~vvviaHRPs~L~ 536 (580)
T COG4618 480 RIALARALYGDPFLVVLDEP----------NSNLDSEGEAALAAAILAAK----ARGGTVVVIAHRPSALA 536 (580)
T ss_pred HHHHHHHHcCCCcEEEecCC----------CCCcchhHHHHHHHHHHHHH----HcCCEEEEEecCHHHHh
Confidence 33455566688999999994 44567777888887777765 45677888999986543
No 309
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.97 E-value=1.5e-05 Score=83.65 Aligned_cols=108 Identities=27% Similarity=0.391 Sum_probs=72.2
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----------CCcEEEEecc------------------------hhhh
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----------DACFIRVIGS------------------------ELVQ 240 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----------~~~~i~v~~~------------------------~l~~ 240 (420)
++.++++..+++.||+|||||+|.|++|+-. +...+++.-. ++..
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence 3456788999999999999999999999842 1112222100 0000
Q ss_pred ------------h------h--hhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc
Q 014712 241 ------------K------Y--VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (420)
Q Consensus 241 ------------~------~--~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (420)
. | +=.+....|-.|.+..-++|.++||||.-. .-+++.+..++++++.-
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATs----------ALDe~~e~~l~q~l~~~- 561 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS----------ALDEETEDRLYQLLKEE- 561 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchh----------ccChHHHHHHHHHHHhh-
Confidence 0 0 001223345677778889999999999644 35788889999988751
Q ss_pred CCcCCCCeEEEEEeCCCC
Q 014712 301 GFDARGNIKVLMATNRPD 318 (420)
Q Consensus 301 ~~~~~~~v~vI~ttn~~~ 318 (420)
-..+.||-.++++.
T Consensus 562 ----lp~~tvISV~Hr~t 575 (604)
T COG4178 562 ----LPDATVISVGHRPT 575 (604)
T ss_pred ----CCCCEEEEeccchh
Confidence 35678888888764
No 310
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.96 E-value=0.00012 Score=72.38 Aligned_cols=158 Identities=19% Similarity=0.276 Sum_probs=94.7
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh------
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY------ 242 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~------ 242 (420)
.+.+.+.++..+...+-. ++ -.-|..+.|||..|||||.+.+.+.+.++.+.+++++-+...-.
T Consensus 7 ~v~~Re~qi~~L~~Llg~---~~-------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---NS-------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhCC---CC-------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 367888999998887743 11 13466789999999999999999999999999999887653211
Q ss_pred ---------hhhhHH----HHH---HHHHH---HHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCC
Q 014712 243 ---------VGEGAR----MVR---ELFQM---ARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF 302 (420)
Q Consensus 243 ---------~g~~~~----~v~---~~f~~---a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~ 302 (420)
.|...+ .+. .+|.+ +.. ...-.|++|++|.+-. .+......+.++-..++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el~~-- 146 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYELLN-- 146 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHHhC--
Confidence 111111 111 12222 111 2356899999999832 23334444444444332
Q ss_pred cCCCCeEEEEEeCCCCCCCccccCcCccc-EEEEccCCCHHHHHHHHHH
Q 014712 303 DARGNIKVLMATNRPDTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKI 350 (420)
Q Consensus 303 ~~~~~v~vI~ttn~~~~ld~al~r~gRfd-~~i~~~~Pd~~~R~~Il~~ 350 (420)
...+.+|.+....... -+.+-|-++ ..++||.|+.++-..|+..
T Consensus 147 --~~~i~iils~~~~e~~--y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 147 --EPTIVIILSAPSCEKQ--YLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred --CCceEEEEeccccHHH--hhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 3444455444332211 111122322 4788999999988887754
No 311
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.96 E-value=4.4e-05 Score=76.51 Aligned_cols=113 Identities=17% Similarity=0.292 Sum_probs=64.9
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCC-----c-EEEEecch------h---------hhhhhhhhHHHHH---HHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDA-----C-FIRVIGSE------L---------VQKYVGEGARMVR---ELFQMA 257 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~-----~-~i~v~~~~------l---------~~~~~g~~~~~v~---~~f~~a 257 (420)
+...+|.||||+|||+|++.+++.... . ++.+.... + ...+.......++ .++..|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999986532 2 22222211 1 1111112222222 233333
Q ss_pred H----hCCCcEEEecCcccccCCcc--------CCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 258 R----SKKACIVFFDEVDAIGGARF--------DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 258 ~----~~~p~Il~iDEiD~l~~~r~--------~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
. .+...+||||||++++.... ..+.|-++......-.++.........+.+.+|+|.
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 2 34667999999998864321 122344555566666777665555456777777764
No 312
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.96 E-value=6e-05 Score=70.39 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLR 326 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r 326 (420)
+-+|.+|.-..|-+|+||| +..+-+......+...+.++.. ..+...+|+.|+..+.++|.+-.
T Consensus 179 rvLiaRALv~~P~LLiLDE----------P~~GLDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 179 RVLIARALVKDPELLILDE----------PAQGLDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHhcCCCEEEecC----------ccccCChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccce
Confidence 4567777778999999999 3344565556566666666542 23456788999999988875543
No 313
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.96 E-value=7.1e-05 Score=70.57 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=37.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
|....|.++++||- .++-|......+.+++..+.. ..+..+|++|+.++.+.
T Consensus 146 al~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 146 ALLHRPALLLLDEP----------TVGLDPASRAAIVAHVRALCR---DQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHhcCCCEEEEcCC----------ccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEecChhhHh
Confidence 44567899999994 445688888888888887631 22456888888776553
No 314
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.95 E-value=1.7e-05 Score=76.34 Aligned_cols=114 Identities=22% Similarity=0.354 Sum_probs=64.8
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCc--EEEEec---------chhhhhh-------hhh------hHHHHHHHHHHHH
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIG---------SELVQKY-------VGE------GARMVRELFQMAR 258 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~--~i~v~~---------~~l~~~~-------~g~------~~~~v~~~f~~a~ 258 (420)
.++++.||+|+||||++++++..+... -+.+++ .++...+ ++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 589999999999999999999976321 122222 2222111 010 1111234566667
Q ss_pred hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC-------ccccCcCccc
Q 014712 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD-------PALLRPGRLD 331 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld-------~al~r~gRfd 331 (420)
...|.+|++||+.. . ..+..++..+. .+..+|++++..+..+ ..|+..+-|+
T Consensus 192 ~~~P~villDE~~~-------------~---e~~~~l~~~~~-----~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~ 250 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-------------E---EDVEALLEALH-----AGVSIIATAHGRDVEDLYKRPVFKELIENEAFE 250 (270)
T ss_pred hCCCCEEEEeCCCc-------------H---HHHHHHHHHHh-----CCCEEEEEechhHHHHHHhChHHHHHHhcCceE
Confidence 78999999999521 2 22333444332 3567899998643211 1223344566
Q ss_pred EEEEcc
Q 014712 332 RKVEFG 337 (420)
Q Consensus 332 ~~i~~~ 337 (420)
+.+.+.
T Consensus 251 r~i~L~ 256 (270)
T TIGR02858 251 RYVVLS 256 (270)
T ss_pred EEEEEe
Confidence 666664
No 315
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=1.1e-05 Score=76.11 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=38.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+....|.+|++|| +.++-++...+.+.+++..+. ..++..+|.+|++.+.+
T Consensus 152 vLa~~P~iliLDE----------Pta~LD~~~~~~l~~~l~~L~---~~~~~tii~~tHd~~~~ 202 (235)
T COG1122 152 VLAMGPEILLLDE----------PTAGLDPKGRRELLELLKKLK---EEGGKTIIIVTHDLELV 202 (235)
T ss_pred HHHcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHHHH---hcCCCeEEEEeCcHHHH
Confidence 4456789999999 556678889999999998875 24456788888876533
No 316
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.93 E-value=4.7e-05 Score=81.43 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcc
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf 330 (420)
|-.+.+|....|.|+++||.-. +-|++....+.+.+..+. .+..+|+.|++++. .+ .+
T Consensus 488 Ri~LARall~~~~ililDEpts----------aLD~~t~~~i~~~l~~~~-----~~~tvI~VtHr~~~-----~~--~~ 545 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATS----------ALDTESERAIQAALDELQ-----KNRTSLVIAHRLST-----IE--KA 545 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccc----------cCCHHHHHHHHHHHHHHh-----CCCEEEEEecchHH-----HH--hC
Confidence 3344445557888999999543 457777777777776652 34568888888753 33 67
Q ss_pred cEEEEcc
Q 014712 331 DRKVEFG 337 (420)
Q Consensus 331 d~~i~~~ 337 (420)
|+++.+.
T Consensus 546 D~Ii~l~ 552 (582)
T PRK11176 546 DEILVVE 552 (582)
T ss_pred CEEEEEE
Confidence 7777775
No 317
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.93 E-value=7.4e-05 Score=68.89 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=38.0
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
|....|.++++||- ..+-+......+.+++.++. ..+..+|++|+.++.++
T Consensus 143 al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 143 LWLTRAPLWILDEP----------FTAIDKQGVARLEALLAQHA----EQGGMVILTTHQDLPVA 193 (204)
T ss_pred HHhcCCCEEEEeCC----------CccCCHHHHHHHHHHHHHHH----HCCCEEEEEecChhhhc
Confidence 44468899999994 44568888888888888763 22457888999887666
No 318
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=6.8e-05 Score=69.35 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+....|.++++||- .++-+......+.+++..+. ..+..||++|+.++.
T Consensus 142 al~~~p~~lllDEP----------~~~LD~~~~~~~~~~l~~~~----~~~~tii~~sH~~~~ 190 (210)
T cd03269 142 AVIHDPELLILDEP----------FSGLDPVNVELLKDVIRELA----RAGKTVILSTHQMEL 190 (210)
T ss_pred HHhcCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHHH
Confidence 44467889999994 44568888888988888764 224678889987653
No 319
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.93 E-value=5.5e-05 Score=74.21 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=38.8
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.|....|.+|++|| +.++-++.....+.+++..+. ..+..||++|+..+.+
T Consensus 137 ~al~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~~~----~~g~tvi~~sH~~~~~ 187 (302)
T TIGR01188 137 ASLIHQPDVLFLDE----------PTTGLDPRTRRAIWDYIRALK----EEGVTILLTTHYMEEA 187 (302)
T ss_pred HHHhcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHHHH
Confidence 34557899999999 556678999999999998774 2356789999986543
No 320
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00011 Score=80.51 Aligned_cols=161 Identities=25% Similarity=0.340 Sum_probs=111.4
Q ss_pred cccccc-HHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CCcEEEEecc
Q 014712 168 NDVGGC-KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGS 236 (420)
Q Consensus 168 ~~i~G~-~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~~~ 236 (420)
+-+.|. ++.++++.+.+.. ...++-+|.|.||+|||.++.-+|+.. +..++.++..
T Consensus 186 dPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 345555 8888888888876 233678999999999999999999864 3455666655
Q ss_pred hhh--hhhhhhhHHHHHHHHHHHH-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 237 ELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 237 ~l~--~~~~g~~~~~v~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
.+. .++.|+.+..+..+...+. .+...||||||++-+.+.... .+..+..+.+..++. ++.+.+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~~nlLkp~L~-------rg~l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDAANLLKPLLA-------RGGLWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHHHHhhHHHHh-------cCCeEEEec
Confidence 433 4567888899999998887 556679999999999775432 111222233333332 455889987
Q ss_pred eCCC-----CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 314 TNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 314 tn~~-----~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
|..- -.-+|++-+ || ..+.++.|+.+.-..||+....+
T Consensus 323 tT~e~Y~k~iekdPalEr--rw-~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALER--RW-QLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ccHHHHHHHHhhCcchhh--Cc-ceeEeccCcccchhhhhhhhhhh
Confidence 7632 345799999 99 45678888877655666655544
No 321
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.92 E-value=9.7e-05 Score=67.87 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=37.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
+....|.++++|| +..+-+......+.+++..+. ..+..+|++|+.+..++
T Consensus 141 al~~~p~~lilDE----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 141 LWMSKAKLWLLDE----------PLVALDELSLLTIITKIQEHR----AKGGAVLLTSHQDLPLN 191 (200)
T ss_pred HHhcCCCEEEEeC----------CCcccCHHHHHHHHHHHHHHH----HcCCEEEEEeCCchhcc
Confidence 4446788999999 444568888888888888753 23456888998876555
No 322
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.92 E-value=5.1e-05 Score=81.28 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=75.9
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHhcC-CcEEEEecchhh-----------------------------------
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-ACFIRVIGSELV----------------------------------- 239 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i~v~~~~l~----------------------------------- 239 (420)
++.++++..+.|.||+|+|||||++.+++... ..-+.+++.++.
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~ 449 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD 449 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC
Confidence 34567888999999999999999999998651 011222221110
Q ss_pred -------------------h-------hhhhh------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHH
Q 014712 240 -------------------Q-------KYVGE------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNE 287 (420)
Q Consensus 240 -------------------~-------~~~g~------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 287 (420)
. ..+|+ +.+..|-.+.+|.-..|.|+++||.-+ +-|.+
T Consensus 450 ~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TS----------aLD~~ 519 (588)
T PRK11174 450 ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTA----------SLDAH 519 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc----------CCCHH
Confidence 0 00111 222334445556667889999999644 45777
Q ss_pred HHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEcc
Q 014712 288 VQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 288 ~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~ 337 (420)
..+.+.+.+..+. .+..+|..|++++.+. .+|+++.+.
T Consensus 520 te~~i~~~l~~~~-----~~~TvIiItHrl~~i~-------~aD~Iivl~ 557 (588)
T PRK11174 520 SEQLVMQALNAAS-----RRQTTLMVTHQLEDLA-------QWDQIWVMQ 557 (588)
T ss_pred HHHHHHHHHHHHh-----CCCEEEEEecChHHHH-------hCCEEEEEe
Confidence 7777777776542 3456888888875433 567777774
No 323
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.91 E-value=1.6e-05 Score=84.44 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=82.8
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecchhhhhhhhhh--HHHH--------HHHHHHHHhCCCcEEEecCc
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKYVGEG--ARMV--------RELFQMARSKKACIVFFDEV 270 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~~~~~g~~--~~~v--------~~~f~~a~~~~p~Il~iDEi 270 (420)
.||+|.|++|+|||+++++++.-+.. +|..+..+--....+|.. +..+ ..++..| ...|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 48999999999999999999998753 766654332222233322 1111 1112222 2259999999
Q ss_pred ccccCCccCCCCCCCHHHHHHHHHHHHHh------cC--CcCCCCeEEEEEeCCC---CCCCccccCcCcccEEEEccCC
Q 014712 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQL------DG--FDARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEFGLP 339 (420)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l------~~--~~~~~~v~vI~ttn~~---~~ld~al~r~gRfd~~i~~~~P 339 (420)
..+ ++.++..|.+-+..- ++ +....++.+|++-|.. ..|+++++. ||+..+.+..|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 887 677888888887753 22 1223467788874432 348888999 99999999988
Q ss_pred CHHH
Q 014712 340 DLES 343 (420)
Q Consensus 340 d~~~ 343 (420)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7643
No 324
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.91 E-value=6.1e-05 Score=70.16 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|-.+.+|....|.+||+|| +.+|.++-....+.+|+..+.. .-+..+|+.|+..+.
T Consensus 153 RvaLARAialdPell~~DE----------PtsGLDPI~a~~~~~LI~~L~~---~lg~T~i~VTHDl~s 208 (263)
T COG1127 153 RVALARAIALDPELLFLDE----------PTSGLDPISAGVIDELIRELND---ALGLTVIMVTHDLDS 208 (263)
T ss_pred HHHHHHHHhcCCCEEEecC----------CCCCCCcchHHHHHHHHHHHHH---hhCCEEEEEECChHH
Confidence 3445667778999999999 5667788888888888887752 345678888887643
No 325
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.90 E-value=5e-05 Score=67.06 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=26.2
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
++.+.++..++|+||+|||||+|.|++|.-
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 345677888999999999999999999985
No 326
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.90 E-value=5.2e-05 Score=74.57 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=40.2
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
..|..+.|.+|++|| +.++-|......+.+++.++. ..+..||++|+..+.+
T Consensus 150 a~aL~~~P~lllLDE----------Pt~gLD~~~~~~l~~~l~~l~----~~g~till~sH~l~e~ 201 (306)
T PRK13537 150 ARALVNDPDVLVLDE----------PTTGLDPQARHLMWERLRSLL----ARGKTILLTTHFMEEA 201 (306)
T ss_pred HHHHhCCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHHHH
Confidence 334557899999999 566788999999999998874 2356799999887544
No 327
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.90 E-value=4.4e-05 Score=75.74 Aligned_cols=28 Identities=39% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
.+.++.-+-|.||+||||||+.|++|.-
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3455555779999999999999999984
No 328
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.89 E-value=5.6e-05 Score=81.02 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=74.7
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecchhhh----------------------------------
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQ---------------------------------- 240 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~~---------------------------------- 240 (420)
+.++++..+.+.|++|+|||||++.+++.... .-+.+++.++..
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~ 441 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDI 441 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCC
Confidence 45678888999999999999999999986421 123333322110
Q ss_pred -------------------h-------hhhh------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 241 -------------------K-------YVGE------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 241 -------------------~-------~~g~------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
. .+++ +.+..|-.+.+|....|.|+++||. .++-|.+.
T Consensus 442 ~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEp----------ts~LD~~t 511 (592)
T PRK10790 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEA----------TANIDSGT 511 (592)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCC----------cccCCHHH
Confidence 0 0000 1222333445555577889999994 34467778
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEcc
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~ 337 (420)
...+.+.+..+. .+..+|..|++++.+. .+|+++.+.
T Consensus 512 ~~~i~~~l~~~~-----~~~tvIivtHr~~~l~-------~~D~ii~l~ 548 (592)
T PRK10790 512 EQAIQQALAAVR-----EHTTLVVIAHRLSTIV-------EADTILVLH 548 (592)
T ss_pred HHHHHHHHHHHh-----CCCEEEEEecchHHHH-------hCCEEEEEE
Confidence 888877776652 2357888999875433 566665553
No 329
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.89 E-value=5.7e-05 Score=71.70 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=72.3
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecchhh-------------------------hhhhhh--hH
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV-------------------------QKYVGE--GA 247 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~-------------------------~~~~g~--~~ 247 (420)
+.+..+..+-|.|++||||||++|.+.+-... --+.+.+.++. ..|..+ +.
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 34567788999999999999999999985432 22333332221 111111 33
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 248 ~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
+..|-.+..|....|.+|+.||.-+. -+..+|..++.|+..++ ...++..++.|+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSa----------LDvSiqaqIlnLL~dlq---~~~~lt~lFIsHDL 170 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSA----------LDVSVQAQILNLLKDLQ---EELGLTYLFISHDL 170 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhh----------cchhHHHHHHHHHHHHH---HHhCCeEEEEEEEH
Confidence 34455566777789999999997665 46677888888887775 24466777787754
No 330
>PRK09354 recA recombinase A; Provisional
Probab=97.89 E-value=5.2e-05 Score=75.30 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=52.5
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEecchhhhh-h---------------hhhhHHHHHHHHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK-Y---------------VGEGARMVRELFQMAR 258 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~~~l~~~-~---------------~g~~~~~v~~~f~~a~ 258 (420)
|++....+.++||+|||||+||-.++.. .+...++++..+-... + ....+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 6777788999999999999999987653 3667777765542111 0 1112233333333445
Q ss_pred hCCCcEEEecCcccccC
Q 014712 259 SKKACIVFFDEVDAIGG 275 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~ 275 (420)
...+.+|+||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 67889999999998875
No 331
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.88 E-value=9.5e-06 Score=67.96 Aligned_cols=30 Identities=37% Similarity=0.631 Sum_probs=26.7
Q ss_pred ceeeCCCCChHHHHHHHHHHhcCCcEEEEe
Q 014712 205 VLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~~~~~i~v~ 234 (420)
++|.|+|||||||+|+.+|+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999988776554
No 332
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.88 E-value=7.7e-05 Score=68.73 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=36.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +..+-|......+.+++..+. ..+..+|++|+.++.
T Consensus 140 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~sH~~~~ 188 (205)
T cd03226 140 ALLSGKDLLIFDE----------PTSGLDYKNMERVGELIRELA----AQGKAVIVITHDYEF 188 (205)
T ss_pred HHHhCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHH
Confidence 4446789999999 445678888899999888763 224568888887653
No 333
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.88 E-value=0.00013 Score=66.44 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=35.6
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|....|.+|++|| +..+-+......+.+++.++. ..+..||++|+.++
T Consensus 141 al~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~----~~~~tili~sH~~~ 188 (190)
T TIGR01166 141 AVAMRPDVLLLDE----------PTAGLDPAGREQMLAILRRLR----AEGMTVVISTHDVD 188 (190)
T ss_pred HHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHH----HcCCEEEEEeeccc
Confidence 3446789999999 445678888888988888764 22457888888765
No 334
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.88 E-value=6e-05 Score=73.66 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=42.1
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+..|..+.|.++|+|| +.+|-|+.....+.+++..+. ..++..|+++|+.++.+
T Consensus 147 ia~aL~~~P~lliLDE----------Pt~GLDp~~~~~~~~~l~~l~---~~g~~tvlissH~l~e~ 200 (293)
T COG1131 147 IALALLHDPELLILDE----------PTSGLDPESRREIWELLRELA---KEGGVTILLSTHILEEA 200 (293)
T ss_pred HHHHHhcCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHH---hCCCcEEEEeCCcHHHH
Confidence 3345567899999999 667789999999999998875 24447899999987544
No 335
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.88 E-value=0.00011 Score=67.57 Aligned_cols=105 Identities=13% Similarity=0.242 Sum_probs=56.0
Q ss_pred CCCC-CcceeeCCCCChHHHHHHHHHH-----hcCCcE---------------EEEecchhhhhhhhhhHHHHHHHHHHH
Q 014712 199 IDPP-KGVLCYGPPGTGKTLLARAVAN-----RTDACF---------------IRVIGSELVQKYVGEGARMVRELFQMA 257 (420)
Q Consensus 199 i~~~-~~vLL~GppGtGKT~Lakala~-----~~~~~~---------------i~v~~~~l~~~~~g~~~~~v~~~f~~a 257 (420)
+.++ +.++|+||.|+|||++.+.++. ..|..+ ..+...+......+....-++.+...+
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~ 103 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARIL 103 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHH
Confidence 3444 3599999999999999999983 112110 011111111111111111112222222
Q ss_pred -HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHH-HHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 258 -RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 258 -~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~-~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
....|.++++||... +.+......+. .++..+. ..+..+|++|+..
T Consensus 104 ~~~~~p~llllDEp~~----------glD~~~~~~i~~~~l~~l~----~~~~~vi~~tH~~ 151 (200)
T cd03280 104 QHADPDSLVLLDELGS----------GTDPVEGAALAIAILEELL----ERGALVIATTHYG 151 (200)
T ss_pred HhCCCCcEEEEcCCCC----------CCCHHHHHHHHHHHHHHHH----hcCCEEEEECCHH
Confidence 235788999999654 34555555553 4566553 2245688888853
No 336
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.87 E-value=0.00012 Score=68.04 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.+|++||- ..+-|......+.+++..+. ..+..+|++|++++.
T Consensus 150 al~~~p~illlDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tii~~tH~~~~ 198 (218)
T cd03266 150 ALVHDPPVLLLDEP----------TTGLDVMATRALREFIRQLR----ALGKCILFSTHIMQE 198 (218)
T ss_pred HHhcCCCEEEEcCC----------CcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHH
Confidence 44468899999994 44568888888988888763 224568888887653
No 337
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.87 E-value=0.00013 Score=69.48 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=64.9
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCc------EEEEecc------hhhhhh--------hhh-hHH---HHHHHHH
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------FIRVIGS------ELVQKY--------VGE-GAR---MVRELFQ 255 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~------~i~v~~~------~l~~~~--------~g~-~~~---~v~~~f~ 255 (420)
..+..++|.||+|+|||+|++.+++..... ++.+... ++.... .+. ... ....+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 345679999999999999999999976542 3232221 111111 111 111 1122222
Q ss_pred HH----HhCCCcEEEecCcccccCC-------ccC-CCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 256 MA----RSKKACIVFFDEVDAIGGA-------RFD-DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 256 ~a----~~~~p~Il~iDEiD~l~~~-------r~~-~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
.| ..+...+||+||+.++... .+. ++.|.++.+...+-+++.....+...+.+.++.|.
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 22 2356779999999987432 222 22234566666667777655444346667666444
No 338
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.87 E-value=6.5e-05 Score=70.17 Aligned_cols=118 Identities=21% Similarity=0.238 Sum_probs=67.1
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---C------CcEEEEecchhhhh-hh-----------------------h
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---D------ACFIRVIGSELVQK-YV-----------------------G 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~------~~~i~v~~~~l~~~-~~-----------------------g 244 (420)
|+++..-+.|+||||+|||+++..+|... + ...+++++..-... .. .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 67888889999999999999999998753 2 55667765432110 00 0
Q ss_pred hhH---HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 245 EGA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 245 ~~~---~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
..+ ..++.+........+.+|+||-+..+........ +...+..+.+.+++..+..+....++.||++...
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~ 168 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR-GMLAERARLLSQALRKLLRLADKFNVAVVFTNQV 168 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC-chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEE
Confidence 011 1112221112245778999999988754321110 0012233445555555554444567777777643
No 339
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.86 E-value=5.9e-05 Score=82.64 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcc
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf 330 (420)
|-.+.+|....|.|+++||.- ++-|......+.+.+.. .+..+|..|++++.+. .+
T Consensus 623 RiaLARall~~p~iliLDEpt----------S~LD~~te~~i~~~l~~-------~~~T~IiitHrl~~i~-------~~ 678 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEAT----------SALDPETEKIIDDNLRR-------RGCTCIIVAHRLSTIR-------DC 678 (710)
T ss_pred HHHHHHHHhhCCCEEEEECcc----------ccCCHHHHHHHHHHHHh-------cCCEEEEEecCHHHHH-------hC
Confidence 444555666789999999953 34577777877777754 2456888899875443 56
Q ss_pred cEEEEcc
Q 014712 331 DRKVEFG 337 (420)
Q Consensus 331 d~~i~~~ 337 (420)
|+++.+.
T Consensus 679 D~Iivl~ 685 (710)
T TIGR03796 679 DEIIVLE 685 (710)
T ss_pred CEEEEEe
Confidence 6666664
No 340
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.86 E-value=1.6e-05 Score=72.88 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=59.2
Q ss_pred ceeeCCCCChHHHHHHHH-HHh---cCCcEEEEecchhhhhhhhh----hHH-------------HHHHHHHHHHhCCCc
Q 014712 205 VLCYGPPGTGKTLLARAV-ANR---TDACFIRVIGSELVQKYVGE----GAR-------------MVRELFQMARSKKAC 263 (420)
Q Consensus 205 vLL~GppGtGKT~Lakal-a~~---~~~~~i~v~~~~l~~~~~g~----~~~-------------~v~~~f~~a~~~~p~ 263 (420)
.+++|.||+|||+.|-.. ... .|..++. +...+....... .-. ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988655 332 2554443 433221111000 000 000111111112567
Q ss_pred EEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCC
Q 014712 264 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 339 (420)
Q Consensus 264 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~P 339 (420)
+|+|||+..+.+.|.... ......+ +++.+.. ..+.-||++|..+..+|+.+++ +.+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~----~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG----KKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc----ccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 999999999988764311 1122233 4444332 4578899999999999999987 77777777644
No 341
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.86 E-value=9.9e-05 Score=68.56 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=36.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +.++-|......+.+++.++. ..+..||++|++++.
T Consensus 152 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 152 AIVHKPPLLLADE----------PTGNLDPELSRDIMRLFEEFN----RRGTTVLVATHDINL 200 (216)
T ss_pred HHhcCCCEEEEeC----------CCCcCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHH
Confidence 4446789999999 455678888889988888764 224568889987653
No 342
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.86 E-value=0.0001 Score=68.63 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=36.5
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+....|.++++|| +..+-|......+.+++..+.. ..+..||++|++++.+
T Consensus 155 al~~~p~illlDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 155 ALVNQPSLVLADE----------PTGNLDNNNAKIIFDLMLELNR---ELNTSFLVVTHDLELA 205 (221)
T ss_pred HHhCCCCEEEEeC----------CCCcCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 3446788999999 4445688888888888887631 2245788899876533
No 343
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.85 E-value=0.00013 Score=67.25 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+....|.++++|| +..+-|......+..++.++.. .+..+|++|++++.
T Consensus 140 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~ 188 (208)
T cd03268 140 ALLGNPDLLILDE----------PTNGLDPDGIKELRELILSLRD----QGITVLISSHLLSE 188 (208)
T ss_pred HHhcCCCEEEECC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHH
Confidence 4446789999999 4445688888888888887641 24568888887653
No 344
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.85 E-value=0.00013 Score=68.59 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=36.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|....|.+|++|| +.++-|......+.+++.++. ..+..||++|+.++
T Consensus 147 al~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~----~~~~tii~~sH~~~ 194 (232)
T cd03218 147 ALATNPKFLLLDE----------PFAGVDPIAVQDIQKIIKILK----DRGIGVLITDHNVR 194 (232)
T ss_pred HHhcCCCEEEecC----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 4446789999999 455678888899999988764 23456888988764
No 345
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.84 E-value=0.00019 Score=67.88 Aligned_cols=39 Identities=31% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEecc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGS 236 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~~ 236 (420)
|++++..++++||||||||++|..++.+ .|.+.++++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 7888899999999999999999876653 35566666543
No 346
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.84 E-value=7.3e-05 Score=81.69 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcc
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf 330 (420)
|-.+.+|....|.|+++||.- ++-|.+....+.+.+..+. .+..+|..|++++.+ + .+
T Consensus 609 RlalARall~~p~iliLDE~T----------s~LD~~te~~i~~~l~~~~-----~~~T~iiItHrl~~~-----~--~~ 666 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPT----------SAMDNRSEERFKDRLKRWL-----AGKTLVLVTHRTSLL-----D--LV 666 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHh-----CCCEEEEEecCHHHH-----H--hC
Confidence 444555556789999999954 3457888888888777653 245688888887533 2 56
Q ss_pred cEEEEcc
Q 014712 331 DRKVEFG 337 (420)
Q Consensus 331 d~~i~~~ 337 (420)
|+++.+.
T Consensus 667 D~iivl~ 673 (694)
T TIGR03375 667 DRIIVMD 673 (694)
T ss_pred CEEEEEe
Confidence 6666653
No 347
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.84 E-value=0.00013 Score=67.60 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=35.8
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +.++-+......+.+++.++. ..+..+|++|++++.
T Consensus 150 al~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~----~~~~tiiivtH~~~~ 198 (214)
T cd03292 150 AIVNSPTILIADE----------PTGNLDPDTTWEIMNLLKKIN----KAGTTVVVATHAKEL 198 (214)
T ss_pred HHHcCCCEEEEeC----------CCCcCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHH
Confidence 3446789999999 444568888888988888763 124568888887643
No 348
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.83 E-value=8.9e-05 Score=68.18 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=41.9
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCC----cEEEEecc-hhhh---------hhhhhhHHHHHHHHHHHHhCCCcEEEecC
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDA----CFIRVIGS-ELVQ---------KYVGEGARMVRELFQMARSKKACIVFFDE 269 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~----~~i~v~~~-~l~~---------~~~g~~~~~v~~~f~~a~~~~p~Il~iDE 269 (420)
.+++.||+|+||||++++++..... .++.+..+ ++.. ..++.....+...+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 22222211 2111 01122222344556666677899999999
Q ss_pred c
Q 014712 270 V 270 (420)
Q Consensus 270 i 270 (420)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 349
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=0.00013 Score=67.14 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=65.7
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcC-----CcEEEEecchhhh-------------------------hhh----
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVIGSELVQ-------------------------KYV---- 243 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i~v~~~~l~~-------------------------~~~---- 243 (420)
.+.++..+.|.||+|+|||||++.++.... .--+.+++..+.. ...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 108 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL 108 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhh
Confidence 456777899999999999999999998643 1122222211100 000
Q ss_pred --------h--hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 244 --------G--EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 244 --------g--~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
. .+....+-.+..|....|.++++|| +..+.+...+..+.+++.++.. ..+..+||.+
T Consensus 109 ~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~~--~~~~t~ii~~ 176 (202)
T cd03233 109 RCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDN----------STRGLDSSTALEILKCIRTMAD--VLKTTTFVSL 176 (202)
T ss_pred hhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcC----------CCccCCHHHHHHHHHHHHHHHH--hCCCEEEEEE
Confidence 0 0111223344555667889999999 4455688888889888887641 1133445556
Q ss_pred eCCC
Q 014712 314 TNRP 317 (420)
Q Consensus 314 tn~~ 317 (420)
++..
T Consensus 177 ~h~~ 180 (202)
T cd03233 177 YQAS 180 (202)
T ss_pred cCCH
Confidence 6543
No 350
>PRK04296 thymidine kinase; Provisional
Probab=97.83 E-value=0.00013 Score=66.69 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=52.8
Q ss_pred cceeeCCCCChHHHHHHHHHHhc---CCcEEEEecc----hhhh---hhhhhh-----HHHHHHHHHHH--HhCCCcEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS----ELVQ---KYVGEG-----ARMVRELFQMA--RSKKACIVF 266 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~----~l~~---~~~g~~-----~~~v~~~f~~a--~~~~p~Il~ 266 (420)
-.+++||+|+|||+++..++.++ +...+.+... .... ...|.. ......++..+ ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888765 4455545321 1000 001110 01122333333 335678999
Q ss_pred ecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
|||++.+ +.+ .+.+++..+. ..++.||++...
T Consensus 84 IDEaq~l-----------~~~---~v~~l~~~l~----~~g~~vi~tgl~ 115 (190)
T PRK04296 84 IDEAQFL-----------DKE---QVVQLAEVLD----DLGIPVICYGLD 115 (190)
T ss_pred EEccccC-----------CHH---HHHHHHHHHH----HcCCeEEEEecC
Confidence 9999765 222 2344554433 345667777654
No 351
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.83 E-value=5.4e-05 Score=85.44 Aligned_cols=137 Identities=26% Similarity=0.291 Sum_probs=87.4
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh---hhh----hhh--hHHHHH-HHHHHHHhCCCcEEEecCc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV---QKY----VGE--GARMVR-ELFQMARSKKACIVFFDEV 270 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~---~~~----~g~--~~~~v~-~~f~~a~~~~p~Il~iDEi 270 (420)
..+++||-|.||+|||+|..++|+.+|...++++.++-. .-+ .++ ++-.++ .-|-.|... ...+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehh
Confidence 356899999999999999999999999999999987432 211 111 111111 123333332 347899998
Q ss_pred ccccCCccCCCCCCCHHHHHHHHHHHHHhc---------CCcCCCCeEEEEEeCCC------CCCCccccCcCcccEEEE
Q 014712 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQLD---------GFDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVE 335 (420)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l~---------~~~~~~~v~vI~ttn~~------~~ld~al~r~gRfd~~i~ 335 (420)
... +..+..-+...|+.-. .|.-..+..|.+|-|.- ..|+..++. || .++.
T Consensus 1621 NLa-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~ 1686 (4600)
T COG5271 1621 NLA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVK 1686 (4600)
T ss_pred hhh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEE
Confidence 653 3444444555554321 13445677787777754 468889998 99 5666
Q ss_pred ccCCCHHHHHHHHHHHH
Q 014712 336 FGLPDLESRTQIFKIHT 352 (420)
Q Consensus 336 ~~~Pd~~~R~~Il~~~~ 352 (420)
+...+.++...|.....
T Consensus 1687 ~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1687 MDGLTTDDITHIANKMY 1703 (4600)
T ss_pred ecccccchHHHHHHhhC
Confidence 77666666555555444
No 352
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=0.00012 Score=68.19 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=36.0
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +.++-+......+.+++.++. ...+..||++|+..+.
T Consensus 145 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tvi~~tH~~~~ 194 (220)
T cd03265 145 SLVHRPEVLFLDE----------PTIGLDPQTRAHVWEYIEKLK---EEFGMTILLTTHYMEE 194 (220)
T ss_pred HHhcCCCEEEEcC----------CccCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 4446789999999 444568888888888888763 1224568888887653
No 353
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.83 E-value=6.8e-05 Score=70.47 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecchhhh-hhh------------------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ-KYV------------------------ 243 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~~l~~-~~~------------------------ 243 (420)
|+.+..-+.|+||||||||+++..++... +...++++..+-.. ...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 67788889999999999999999998542 25667776544110 000
Q ss_pred --hhhHHHHHHHHHHHHhC-CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 244 --GEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 244 --g~~~~~v~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
.+-...+..+-...... .+.+|+||-+..+...-.... +......+.+.+++..+..+....++.||+|...
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~ 169 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQV 169 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccE
Confidence 00011112222223344 789999999998753211100 0012333455555555544444567777777543
No 354
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.82 E-value=8.3e-05 Score=79.66 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcc
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf 330 (420)
|-.+.+|..+.|.|+++||..+ +-|......+.+.+..+. .+..+|..|++++. .+ .+
T Consensus 479 RialARall~~~~iliLDEpts----------~LD~~t~~~i~~~l~~~~-----~~~tvIiitHr~~~-----~~--~~ 536 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATS----------ALDVETEAKVKAALDELM-----KGRTTFIIAHRLST-----VR--NA 536 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHh-----cCCEEEEEEecHHH-----HH--hC
Confidence 3444555567889999999543 457777888877776542 24568888887743 33 56
Q ss_pred cEEEEcc
Q 014712 331 DRKVEFG 337 (420)
Q Consensus 331 d~~i~~~ 337 (420)
|+++.+.
T Consensus 537 D~ii~l~ 543 (588)
T PRK13657 537 DRILVFD 543 (588)
T ss_pred CEEEEEE
Confidence 6666663
No 355
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.82 E-value=0.0001 Score=68.27 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=36.5
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.++++|| +..+-+......+.+++.++.. .+..||++|+.++.+
T Consensus 149 al~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~~----~~~tvi~~sh~~~~~ 198 (213)
T cd03262 149 ALAMNPKVMLFDE----------PTSALDPELVGEVLDVMKDLAE----EGMTMVVVTHEMGFA 198 (213)
T ss_pred HHhcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHH
Confidence 3446789999999 4456788888999999987742 245688888876533
No 356
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.82 E-value=0.00012 Score=68.14 Aligned_cols=51 Identities=18% Similarity=0.046 Sum_probs=36.9
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
+....|.++++||- .++-+......+.+++..+. ..+..+|++|+..+.+.
T Consensus 151 al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 151 LWLSPAPLWLLDEP----------YANLDLEGITLVNRMISAHL----RGGGAALVTTHGAYAAP 201 (214)
T ss_pred HHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH----hCCCEEEEEecChhhhh
Confidence 44468899999994 44567888888888887763 22346888998776554
No 357
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.82 E-value=8.4e-05 Score=81.10 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=26.7
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++++..+.+.|++|||||||++.+++..
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788899999999999999999999864
No 358
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.82 E-value=0.00014 Score=67.89 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=37.4
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.|....|.++++|| +.++-+......+.+++.++. ..+..||++|+.++.+
T Consensus 137 ral~~~p~llllDE----------P~~~LD~~~~~~l~~~L~~~~----~~~~tiii~sH~~~~~ 187 (223)
T TIGR03740 137 IALLNHPKLLILDE----------PTNGLDPIGIQELRELIRSFP----EQGITVILSSHILSEV 187 (223)
T ss_pred HHHhcCCCEEEECC----------CccCCCHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHH
Confidence 34456789999999 445678888899999988764 2345688888876543
No 359
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.82 E-value=1.9e-05 Score=70.73 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.1
Q ss_pred cceeeCCCCChHHHHHHHHHHhc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~ 226 (420)
+++|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 360
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=0.00013 Score=67.97 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=36.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +.++-+......+.+++.++. ...+..||++|+.++.
T Consensus 145 al~~~p~lllLDE----------Pt~~LD~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~~ 194 (220)
T cd03293 145 ALAVDPDVLLLDE----------PFSALDALTREQLQEELLDIW---RETGKTVLLVTHDIDE 194 (220)
T ss_pred HHHcCCCEEEECC----------CCCCCCHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHH
Confidence 4446789999999 445678888899999888763 1234568888887653
No 361
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.82 E-value=0.0002 Score=65.65 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=35.5
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+....|.++++||- ..+-+......+.+++..+. ..+..+|++|+.+..+
T Consensus 141 al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 141 LWLSRAPLWILDEP----------TTALDKAGVALLAGLLRAHL----ARGGIVLLTTHQDLGL 190 (198)
T ss_pred HHhcCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHH----hCCCEEEEEEcccccc
Confidence 34467889999994 44567888888888888763 2234688888876533
No 362
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.82 E-value=0.00014 Score=67.61 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=36.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++||- ..+-+......+.+++..+. . +..||++|+.++.+
T Consensus 147 al~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sH~~~~~ 195 (220)
T cd03263 147 ALIGGPSVLLLDEP----------TSGLDPASRRAIWDLILEVR----K-GRSIILTTHSMDEA 195 (220)
T ss_pred HHhcCCCEEEECCC----------CCCCCHHHHHHHHHHHHHHh----c-CCEEEEEcCCHHHH
Confidence 34467899999994 44568888888888888764 2 26788899877543
No 363
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.81 E-value=0.00011 Score=68.19 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=35.8
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++||- ..+-|......+.+++.++. ..+..+|++|++++.
T Consensus 151 al~~~p~lllLDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tii~~tH~~~~ 199 (214)
T TIGR02673 151 AIVNSPPLLLADEP----------TGNLDPDLSERILDLLKRLN----KRGTTVIVATHDLSL 199 (214)
T ss_pred HHhCCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHH
Confidence 34467899999994 44568888889999888763 124568888887653
No 364
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.80 E-value=0.00012 Score=67.71 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=36.0
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+....|.++++|| +..+-+......+.+++.++. ...+..||++|+.++
T Consensus 144 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tvi~~sH~~~ 192 (213)
T cd03301 144 AIVREPKVFLMDE----------PLSNLDAKLRVQMRAELKRLQ---QRLGTTTIYVTHDQV 192 (213)
T ss_pred HHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHH
Confidence 4446789999999 445678888888988888763 123457888888764
No 365
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.80 E-value=0.00017 Score=66.33 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=37.7
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
..+....|.+|++|| +..+-+......+.+++.++. ..+..+|++|+++..+.
T Consensus 137 aral~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tiii~sH~~~~~~ 189 (201)
T cd03231 137 ARLLLSGRPLWILDE----------PTTALDKAGVARFAEAMAGHC----ARGGMVVLTTHQDLGLS 189 (201)
T ss_pred HHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCchhhh
Confidence 334456889999999 444568888888888887653 22456888888766544
No 366
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.80 E-value=0.00011 Score=67.70 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHH
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~ 224 (420)
+.++..++|+||.|+|||++++.++.
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHH
Confidence 34445799999999999999999994
No 367
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.80 E-value=0.0001 Score=77.92 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=26.4
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++++..+.+.||+|+|||||++.+++..
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788889999999999999999999854
No 368
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=0.00014 Score=68.37 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++||- ..+-|......+.+++.++. ...+..||++|+.++.+
T Consensus 159 al~~~p~lllLDEP----------t~~LD~~~~~~l~~~l~~~~---~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 159 ALVNNPRLVLADEP----------TGNLDARNADSIFQLLGELN---RLQGTAFLVVTHDLQLA 209 (233)
T ss_pred HHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHH
Confidence 44467899999994 44568888888888888763 12356788898876543
No 369
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.80 E-value=1.9e-05 Score=70.24 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=30.2
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
+++..++|+|+||||||++|+.+|..++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4677899999999999999999999999887743
No 370
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=0.00012 Score=73.58 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=37.3
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++||- .++-|......+..++..+. ...+..+|++|+..+
T Consensus 145 lARAL~~~P~llLLDEP----------~s~LD~~~r~~l~~~l~~l~---~~~g~tii~vTHd~~ 196 (356)
T PRK11650 145 MGRAIVREPAVFLFDEP----------LSNLDAKLRVQMRLEIQRLH---RRLKTTSLYVTHDQV 196 (356)
T ss_pred HHHHHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 34455578999999994 44567888888888887664 133567899998764
No 371
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00018 Score=71.86 Aligned_cols=153 Identities=21% Similarity=0.309 Sum_probs=97.4
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc--CCcEEEEecchhhhhhhhh--------------hHHHHHHHHHHHHhCC
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSELVQKYVGE--------------GARMVRELFQMARSKK 261 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~--~~~~i~v~~~~l~~~~~g~--------------~~~~v~~~f~~a~~~~ 261 (420)
|+-+..-+|+-|.||.|||||+-.+|..+ ..+.++|++.+-.+..... .+..+..+...+...+
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 56677779999999999999888887765 3379999998766543221 2334667788888899
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC---CCCCccccCcCcccEEEEccC
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~---~~ld~al~r~gRfd~~i~~~~ 338 (420)
|.+++||-|..+.....++..+.-..+...-.+|+..-. ..++.+++..+-. ..--|.++- +..|.+++|.
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK----~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFE- 242 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK----TKNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFE- 242 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH----HcCCeEEEEEEEcccccccCchhee-eeeeEEEEEe-
Confidence 999999999999876655544444444444445544322 4455555544321 122344443 3566777775
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 014712 339 PDLESRTQIFKIHTRTMN 356 (420)
Q Consensus 339 Pd~~~R~~Il~~~~~~~~ 356 (420)
-|...+..|++.+-.+++
T Consensus 243 Gd~~~~~RiLR~vKNRFG 260 (456)
T COG1066 243 GDRHSRYRILRSVKNRFG 260 (456)
T ss_pred ccCCCceeeeehhcccCC
Confidence 344455566665554443
No 372
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.79 E-value=0.00013 Score=68.32 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=35.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+....|.+|++||- .++-+...+..+.+++..+. ..+..||++|+.++.
T Consensus 156 al~~~p~llllDEP----------~~gLD~~~~~~~~~~l~~~~----~~~~tiii~sH~~~~ 204 (224)
T cd03220 156 ATALEPDILLIDEV----------LAVGDAAFQEKCQRRLRELL----KQGKTVILVSHDPSS 204 (224)
T ss_pred HHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHH
Confidence 44468899999994 44567888888888887763 224568888887653
No 373
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.79 E-value=9.1e-05 Score=73.89 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=39.1
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|..+.|.+|++|| +.++-|+..+..+.+++.++. ..+..||++|+..+.+
T Consensus 186 aL~~~P~lLiLDE----------Pt~gLD~~~r~~l~~~l~~l~----~~g~tilisSH~l~e~ 235 (340)
T PRK13536 186 ALINDPQLLILDE----------PTTGLDPHARHLIWERLRSLL----ARGKTILLTTHFMEEA 235 (340)
T ss_pred HHhcCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHHHH
Confidence 4457899999999 556778999999999998874 2356789999877544
No 374
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=0.00014 Score=69.53 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+....|.+|++|| +..+-+......+.+++..+. ...+..||++|+.++.
T Consensus 142 al~~~p~lllLDE----------Pt~~LD~~~~~~l~~~L~~~~---~~~g~tviivsH~~~~ 191 (255)
T PRK11248 142 ALAANPQLLLLDE----------PFGALDAFTREQMQTLLLKLW---QETGKQVLLITHDIEE 191 (255)
T ss_pred HHhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 4446789999999 445678888899999888762 1224568888887653
No 375
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.79 E-value=0.00015 Score=66.99 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=36.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +.++-+......+.+++.++.. .+..||++|+.++.
T Consensus 148 al~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~~----~~~tvi~~sH~~~~ 196 (211)
T cd03225 148 VLAMDPDILLLDE----------PTAGLDPAGRRELLELLKKLKA----EGKTIIIVTHDLDL 196 (211)
T ss_pred HHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHH
Confidence 3446788999999 4456788888889888887642 24678888887653
No 376
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.79 E-value=0.0001 Score=78.64 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=27.2
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
++.++++..+.+.|++|+|||||++.+++..
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3456788899999999999999999999864
No 377
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00017 Score=74.94 Aligned_cols=118 Identities=26% Similarity=0.312 Sum_probs=76.0
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhh------------------------------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV------------------------------------ 239 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~------------------------------------ 239 (420)
.+++.+.+-|.|++|||||||+.++++.+. ..-+.+++.++.
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~ 422 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA 422 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcC
Confidence 457788899999999999999999998642 222333322110
Q ss_pred ------------------hh------hhhh------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 240 ------------------QK------YVGE------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 240 ------------------~~------~~g~------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
.. .+|+ +.+..|-...+|--.++.++++||. +.+-|.+..
T Consensus 423 s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEp----------TA~LD~etE 492 (559)
T COG4988 423 SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEP----------TAHLDAETE 492 (559)
T ss_pred CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCC----------ccCCCHhHH
Confidence 00 0111 2334455566666677889999994 445678888
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEcc
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~ 337 (420)
..+.+.+.++. .+..+|++|++...+- ..|+++.+.
T Consensus 493 ~~i~~~l~~l~-----~~ktvl~itHrl~~~~-------~~D~I~vld 528 (559)
T COG4988 493 QIILQALQELA-----KQKTVLVITHRLEDAA-------DADRIVVLD 528 (559)
T ss_pred HHHHHHHHHHH-----hCCeEEEEEcChHHHh-------cCCEEEEec
Confidence 88888887764 2356888899875432 455555544
No 378
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=0.00017 Score=66.90 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=36.1
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +.++-|......+.+++.++.. ..+..||++|++++.
T Consensus 144 al~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~ 193 (213)
T cd03259 144 ALAREPSLLLLDE----------PLSALDAKLREELREELKELQR---ELGITTIYVTHDQEE 193 (213)
T ss_pred HHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH---HcCCEEEEEecCHHH
Confidence 4446788999999 4456788888888888887631 224568888887653
No 379
>PRK08118 topology modulation protein; Reviewed
Probab=97.79 E-value=3.8e-05 Score=68.71 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=29.3
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
.+++.||||+||||+|+.+++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887764
No 380
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.78 E-value=0.0001 Score=68.94 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=66.0
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---c-CCcEEEEecchhhhhh--------------------------h----
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---T-DACFIRVIGSELVQKY--------------------------V---- 243 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---~-~~~~i~v~~~~l~~~~--------------------------~---- 243 (420)
|++++..+|+.||||||||+++..++.. . +.+.++++..+-.... .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 7788889999999999999999987653 2 7777777653221110 0
Q ss_pred ---hhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 244 ---GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 244 ---g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
.........+........+.+++||-+..+. ... ........+..+...+. ..++.+|+++..
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~-----~~~~~r~~l~~l~~~l~----~~~~t~llt~~~ 160 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD-----DPEELRRFLRALIKFLK----SRGVTTLLTSEM 160 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS-----SGGGHHHHHHHHHHHHH----HTTEEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC-----CHHHHHHHHHHHHHHHH----HCCCEEEEEEcc
Confidence 1122334444455556677899999999982 211 12334445555665553 345666666663
No 381
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.78 E-value=0.00012 Score=77.96 Aligned_cols=65 Identities=28% Similarity=0.299 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcc
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRf 330 (420)
|-.+.+|....|.|+++||.- ++-|......+.+.+..+. .+..+|..|+++.. .. .+
T Consensus 477 RiaLARall~~~~illLDEpt----------s~LD~~~~~~i~~~L~~~~-----~~~tiIiitH~~~~-----~~--~~ 534 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEAT----------SALDNESERLVQAALERLM-----QGRTTLVIAHRLST-----IE--KA 534 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCcc----------ccCCHHHHHHHHHHHHHHh-----CCCEEEEEehhhHH-----HH--hC
Confidence 344455555788899999954 3457777888887776642 23567778887643 33 66
Q ss_pred cEEEEcc
Q 014712 331 DRKVEFG 337 (420)
Q Consensus 331 d~~i~~~ 337 (420)
|+++.+.
T Consensus 535 D~ii~l~ 541 (571)
T TIGR02203 535 DRIVVMD 541 (571)
T ss_pred CEEEEEe
Confidence 7777664
No 382
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.00022 Score=64.81 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=38.7
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
.|.-+.|++++||| +.+|-+-...+.+..++.++. +.+..||++|+..+.
T Consensus 146 RAlvh~P~i~vlDE----------P~sGLDi~~~r~~~dfi~q~k----~egr~viFSSH~m~E 195 (245)
T COG4555 146 RALVHDPSILVLDE----------PTSGLDIRTRRKFHDFIKQLK----NEGRAVIFSSHIMQE 195 (245)
T ss_pred HHHhcCCCeEEEcC----------CCCCccHHHHHHHHHHHHHhh----cCCcEEEEecccHHH
Confidence 34558999999999 556677777888888888875 557789999986543
No 383
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.78 E-value=0.00055 Score=64.59 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=78.2
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecchhhhhh---h-----------hhhHHH----HHHHHHHHH-
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKY---V-----------GEGARM----VRELFQMAR- 258 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~~~~---~-----------g~~~~~----v~~~f~~a~- 258 (420)
+.|-.+++.|++|||||++++.+...+.. ..+.+-++.....+ + .+.+.. ...+-+.+.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 45667999999999999999998876533 22222222211111 0 000111 111111111
Q ss_pred --h---CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEE
Q 014712 259 --S---KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRK 333 (420)
Q Consensus 259 --~---~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~ 333 (420)
. ..+.+|+||++.. ...-...+.+++.... .-++.+|.++...-.+++.++. -.+..
T Consensus 91 ~~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred hcccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceEE
Confidence 1 2367999999632 1112345667766432 4578999999999999999876 67777
Q ss_pred EEccCCCHHHHHHHHHHHH
Q 014712 334 VEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 334 i~~~~Pd~~~R~~Il~~~~ 352 (420)
+-++ .+..+...|++.+.
T Consensus 153 i~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNMN 170 (241)
T ss_pred EEec-CcHHHHHHHHHhcc
Confidence 7675 46666555555543
No 384
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.78 E-value=0.00014 Score=71.47 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=37.9
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++|| +.++-+......+.+++.++. ..+..||++|+.++.+
T Consensus 149 al~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~~~----~~g~til~~sH~~~~~ 198 (303)
T TIGR01288 149 ALINDPQLLILDE----------PTTGLDPHARHLIWERLRSLL----ARGKTILLTTHFMEEA 198 (303)
T ss_pred HHhcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHHHH
Confidence 4456889999999 555678888999999988764 2356788999876543
No 385
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.77 E-value=0.00012 Score=80.11 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCccc
Q 014712 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLD 331 (420)
Q Consensus 252 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd 331 (420)
-.+.+|....|.|+++||.- ++-|......+.+.+..+. .+..+|.+|++++.+. .+|
T Consensus 602 i~lARall~~~~ililDEpt----------s~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~~-------~~d 659 (694)
T TIGR01846 602 IAIARALVGNPRILIFDEAT----------SALDYESEALIMRNMREIC-----RGRTVIIIAHRLSTVR-------ACD 659 (694)
T ss_pred HHHHHHHHhCCCEEEEECCC----------cCCCHHHHHHHHHHHHHHh-----CCCEEEEEeCChHHHH-------hCC
Confidence 33444555788999999953 4467888888888887652 2457888999876443 355
Q ss_pred EEEEcc
Q 014712 332 RKVEFG 337 (420)
Q Consensus 332 ~~i~~~ 337 (420)
+++.+.
T Consensus 660 ~ii~l~ 665 (694)
T TIGR01846 660 RIIVLE 665 (694)
T ss_pred EEEEEe
Confidence 555553
No 386
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.77 E-value=4.9e-05 Score=85.77 Aligned_cols=135 Identities=19% Similarity=0.293 Sum_probs=90.5
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh--hhhhhh----hHH---HHHHHHHHHHhCCCcEEEecCcccc
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV--QKYVGE----GAR---MVRELFQMARSKKACIVFFDEVDAI 273 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~--~~~~g~----~~~---~v~~~f~~a~~~~p~Il~iDEiD~l 273 (420)
..+||.||+.+|||++...+|.++|..|++++-.+.. +.|+|. ... .-..++-.|..... .|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy-WIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY-WIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc-EEEeeccccC
Confidence 4689999999999999999999999999999976543 234332 111 11123333433333 7899998653
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHhcC---------CcCCCCeEEEEEeCCC------CCCCccccCcCcccEEEEccC
Q 014712 274 GGARFDDGVGGDNEVQRTMLEIVNQLDG---------FDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~---------~~~~~~v~vI~ttn~~------~~ld~al~r~gRfd~~i~~~~ 338 (420)
..++..++..||+.-.. ..+..++.+.+|-|.| ..|..|++. || ..++|.-
T Consensus 968 -----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFdd 1033 (4600)
T COG5271 968 -----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDD 1033 (4600)
T ss_pred -----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhccc
Confidence 56778888888864322 2345567777777766 346788888 88 5666765
Q ss_pred CCHHHHHHHHHHHH
Q 014712 339 PDLESRTQIFKIHT 352 (420)
Q Consensus 339 Pd~~~R~~Il~~~~ 352 (420)
-..++...||...+
T Consensus 1034 ipedEle~ILh~rc 1047 (4600)
T COG5271 1034 IPEDELEEILHGRC 1047 (4600)
T ss_pred CcHHHHHHHHhccC
Confidence 55566666665443
No 387
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.77 E-value=0.00015 Score=67.48 Aligned_cols=46 Identities=13% Similarity=0.343 Sum_probs=34.7
Q ss_pred hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
...|.+|++|| +..+-+......+.+++.++. ..+..||++|+.++
T Consensus 148 ~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~ 193 (222)
T cd03224 148 MSRPKLLLLDE----------PSEGLAPKIVEEIFEAIRELR----DEGVTILLVEQNAR 193 (222)
T ss_pred hcCCCEEEECC----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 35788999999 444568888889999988764 13457888888765
No 388
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=0.00024 Score=66.54 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=35.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+....|.++++||- ..+-+......+.+++..+. . +..||++|+.++.+
T Consensus 153 al~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 201 (229)
T cd03254 153 AMLRDPKILILDEA----------TSNIDTETEKLIQEALEKLM----K-GRTSIIIAHRLSTI 201 (229)
T ss_pred HHhcCCCEEEEeCc----------cccCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 44467899999994 44567888888888887763 2 45688888876543
No 389
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.76 E-value=0.00017 Score=76.23 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=26.5
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++++..+.+.||+|+|||||++.+++..
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788889999999999999999999854
No 390
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=0.00016 Score=70.20 Aligned_cols=51 Identities=29% Similarity=0.289 Sum_probs=37.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++|| +..+-+...+..+.+++..+.. ..+..||++|+.++.+
T Consensus 154 al~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~l~~---~~~~tilivsH~~~~~ 204 (279)
T PRK13635 154 VLALQPDIIILDE----------ATSMLDPRGRREVLETVRQLKE---QKGITVLSITHDLDEA 204 (279)
T ss_pred HHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---cCCCEEEEEecCHHHH
Confidence 4456889999999 4445788888999998887641 2356788888876543
No 391
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=0.00016 Score=68.01 Aligned_cols=50 Identities=14% Similarity=0.309 Sum_probs=35.8
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +..+-+......+.+++.++. ...+..||++|+.++.
T Consensus 154 al~~~p~lllLDE----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tvii~sH~~~~ 203 (233)
T cd03258 154 ALANNPKVLLCDE----------ATSALDPETTQSILALLRDIN---RELGLTIVLITHEMEV 203 (233)
T ss_pred HHhcCCCEEEecC----------CCCcCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH
Confidence 3446788999999 444568888888888887763 1234578888887653
No 392
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.75 E-value=0.00026 Score=68.12 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=61.2
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC---CcEEEEe-cchhhh
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVI-GSELVQ 240 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~-~~~l~~ 240 (420)
.+++++|-..++.+.+++++.. +...+++.||+|+||||+++++..... ..++.+. ..++..
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 4677788778888888777754 233589999999999999999987653 2344442 112211
Q ss_pred h-----hhh-hhHHHHHHHHHHHHhCCCcEEEecCcc
Q 014712 241 K-----YVG-EGARMVRELFQMARSKKACIVFFDEVD 271 (420)
Q Consensus 241 ~-----~~g-~~~~~v~~~f~~a~~~~p~Il~iDEiD 271 (420)
. .+. ........+...+....|++|+++|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1 011 111234566677777899999999984
No 393
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.74 E-value=0.0002 Score=65.93 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=35.6
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|....|.++++||- .++-+......+.+++.++. ..+..+|++|+.++
T Consensus 148 al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~ 195 (206)
T TIGR03608 148 AILKDPPLILADEP----------TGSLDPKNRDEVLDLLLELN----DEGKTIIIVTHDPE 195 (206)
T ss_pred HHHcCCCEEEEeCC----------cCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHH
Confidence 34467899999994 44568888899999988764 22456788888765
No 394
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=0.00023 Score=67.02 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=37.5
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+..|....|.+|++||- ..+-+......+.+++..+. . +..||++|+.++.+
T Consensus 148 la~aL~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sh~~~~~ 199 (236)
T cd03253 148 IARAILKNPPILLLDEA----------TSALDTHTEREIQAALRDVS----K-GRTTIVIAHRLSTI 199 (236)
T ss_pred HHHHHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHhc----C-CCEEEEEcCCHHHH
Confidence 33445578899999994 44567888888888887764 2 45688888876544
No 395
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=0.00023 Score=65.82 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +..+-+...+..+.+++..+. .+ ..+|++|+.++.
T Consensus 144 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~-~tii~vsH~~~~ 191 (211)
T cd03264 144 ALVGDPSILIVDE----------PTAGLDPEERIRFRNLLSELG----ED-RIVILSTHIVED 191 (211)
T ss_pred HHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHh----CC-CEEEEEcCCHHH
Confidence 4446789999999 455678888999999998874 22 568888887653
No 396
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00016 Score=69.87 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=37.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++|| +..+.+...+..+.+++.++. ..+..||++|+.++.+
T Consensus 150 al~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~l~----~~g~til~~tH~~~~~ 199 (274)
T PRK13644 150 ILTMEPECLIFDE----------VTSMLDPDSGIAVLERIKKLH----EKGKTIVYITHNLEEL 199 (274)
T ss_pred HHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH----hCCCEEEEEecCHHHH
Confidence 4456889999999 444568888888888888764 2356788889877644
No 397
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.74 E-value=0.00015 Score=72.45 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=38.3
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
..|....|.+|++||. .++.|+.....+.+++..+.. ..++.||++|+..+.
T Consensus 152 ARAL~~~P~iLLlDEP----------ts~LD~~t~~~i~~lL~~l~~---~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 152 ARALASNPKVLLCDEA----------TSALDPATTQSILELLKEINR---RLGLTILLITHEMDV 203 (343)
T ss_pred HHHHHhCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 3345568999999994 445688888999998887741 235778999987654
No 398
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00025 Score=68.34 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=36.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.++++||- ..+-+......+.+++.++. ...+..+|++|+.++.+
T Consensus 156 al~~~p~lllLDEP----------t~~LD~~~~~~l~~~L~~~~---~~~~~tiiivtH~~~~~ 206 (269)
T PRK13648 156 VLALNPSVIILDEA----------TSMLDPDARQNLLDLVRKVK---SEHNITIISITHDLSEA 206 (269)
T ss_pred HHHcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCchHH
Confidence 44467889999994 44567888888888887763 12245688888877644
No 399
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.73 E-value=0.00017 Score=77.00 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=26.1
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 346778889999999999999999999854
No 400
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=0.00029 Score=66.19 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=36.5
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.|....|.++++||- ..+-+......+.+++..+. . +..||++|+.++.+
T Consensus 151 ~al~~~p~lllLDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 200 (234)
T cd03251 151 RALLKDPPILILDEA----------TSALDTESERLVQAALERLM----K-NRTTFVIAHRLSTI 200 (234)
T ss_pred HHHhcCCCEEEEeCc----------cccCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 344567899999994 44568888888888888763 2 35688888877544
No 401
>PRK07261 topology modulation protein; Provisional
Probab=97.73 E-value=5.7e-05 Score=67.83 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.3
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 237 (420)
.+++.|+||+||||||+.++..++.+++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 3789999999999999999999998887766443
No 402
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.73 E-value=0.00014 Score=71.33 Aligned_cols=52 Identities=12% Similarity=0.257 Sum_probs=39.0
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+..|..+.|.++++|| +..+-+......+.+++.++. . +..||++|+..+.+
T Consensus 144 la~al~~~p~lliLDE----------Pt~gLD~~~~~~l~~~l~~~~----~-~~tiii~sH~l~~~ 195 (301)
T TIGR03522 144 LAQALIHDPKVLILDE----------PTTGLDPNQLVEIRNVIKNIG----K-DKTIILSTHIMQEV 195 (301)
T ss_pred HHHHHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHhc----C-CCEEEEEcCCHHHH
Confidence 3335557899999999 555678888999999988874 2 36788899877543
No 403
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.73 E-value=0.00019 Score=66.78 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=58.2
Q ss_pred CcceeeCCCCChHHHHHHHHHH-----hcCCcEE--------------EEecchhhhhhhhhhHHHHHH-HHHHHHhCCC
Q 014712 203 KGVLCYGPPGTGKTLLARAVAN-----RTDACFI--------------RVIGSELVQKYVGEGARMVRE-LFQMARSKKA 262 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~-----~~~~~~i--------------~v~~~~l~~~~~g~~~~~v~~-~f~~a~~~~p 262 (420)
+.++|+||.|+|||++.+.++. ..|.... .+...+-...........++. .+..+....|
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999983 2333211 111111111111111212222 2222334678
Q ss_pred cEEEecCcccccCCccCCCCCCCH-HHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCc
Q 014712 263 CIVFFDEVDAIGGARFDDGVGGDN-EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP 322 (420)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~-~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 322 (420)
++++|||+..- .+. +....+..++..+.. ....+..+|++|+..+.+..
T Consensus 110 slvllDE~~~g----------td~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 110 SLVLIDEFGKG----------TDTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred cEEEeccccCC----------CCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHh
Confidence 99999997552 233 334444455555431 00123578889987654443
No 404
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=0.00015 Score=70.29 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=37.6
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.|....|.+|++||- ..+-+......+.+++.++.. ..+..||++|+..+.+
T Consensus 153 ral~~~p~lLlLDEP----------t~~LD~~~~~~l~~~l~~l~~---~~g~tilivtH~~~~~ 204 (279)
T PRK13650 153 GAVAMRPKIIILDEA----------TSMLDPEGRLELIKTIKGIRD---DYQMTVISITHDLDEV 204 (279)
T ss_pred HHHHcCCCEEEEECC----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHH
Confidence 344568899999994 445688888888888887641 2356788899876544
No 405
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.73 E-value=0.00016 Score=76.73 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=26.6
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++++..+.+.||+|+|||||++.+++..
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788889999999999999999999864
No 406
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.73 E-value=0.00018 Score=68.62 Aligned_cols=111 Identities=25% Similarity=0.331 Sum_probs=66.8
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCC-----------cEEEEecc-hhh-------hhh----hhh--------
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-----------CFIRVIGS-ELV-------QKY----VGE-------- 245 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~-----------~~i~v~~~-~l~-------~~~----~g~-------- 245 (420)
+.+.++..+.|.||+|+|||||++.+++.... .+.++... .+. ..+ .+.
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPA 104 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHH
Confidence 44677888999999999999999999985310 11111100 000 000 000
Q ss_pred ------------------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCC
Q 014712 246 ------------------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (420)
Q Consensus 246 ------------------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (420)
+....+-.+..|....|.++++||- ..+-+......+.+++.++.. ..+
T Consensus 105 l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP----------t~~LD~~~~~~l~~~L~~~~~---~~g 171 (251)
T PRK09544 105 LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP----------TQGVDVNGQVALYDLIDQLRR---ELD 171 (251)
T ss_pred HHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHHH---hcC
Confidence 0111122334455578899999994 445678888888888876531 224
Q ss_pred eEEEEEeCCCCCC
Q 014712 308 IKVLMATNRPDTL 320 (420)
Q Consensus 308 v~vI~ttn~~~~l 320 (420)
..||++|+.++.+
T Consensus 172 ~tiiivsH~~~~i 184 (251)
T PRK09544 172 CAVLMVSHDLHLV 184 (251)
T ss_pred CEEEEEecCHHHH
Confidence 5688888876543
No 407
>PRK10908 cell division protein FtsE; Provisional
Probab=97.72 E-value=0.00023 Score=66.41 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=35.7
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++|| +..+-+...+..+.+++.++. ..+..+|++|+.++.
T Consensus 151 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~ 199 (222)
T PRK10908 151 AVVNKPAVLLADE----------PTGNLDDALSEGILRLFEEFN----RVGVTVLMATHDIGL 199 (222)
T ss_pred HHHcCCCEEEEeC----------CCCcCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHH
Confidence 3446788999999 444567888888888888764 224578888887653
No 408
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.72 E-value=0.00028 Score=65.10 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=66.4
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecch---------------------hhh--------hhhhh
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSE---------------------LVQ--------KYVGE 245 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~---------------------l~~--------~~~g~ 245 (420)
+.+.++..+.|.||+|+|||||++++++... .--+.+++.. +.. .+...
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~ 108 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY 108 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCC
Confidence 3456777899999999999999999998531 1111111110 000 00000
Q ss_pred -------------------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCC
Q 014712 246 -------------------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (420)
Q Consensus 246 -------------------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (420)
+....+-.+..+....|.++++||- ..+-+......+.+++..+. .
T Consensus 109 ~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~----~- 173 (207)
T cd03369 109 SDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA----------TASIDYATDALIQKTIREEF----T- 173 (207)
T ss_pred CHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC----------cccCCHHHHHHHHHHHHHhc----C-
Confidence 0112223344455578899999994 34567888888888888752 2
Q ss_pred CeEEEEEeCCCCCC
Q 014712 307 NIKVLMATNRPDTL 320 (420)
Q Consensus 307 ~v~vI~ttn~~~~l 320 (420)
+..+|++|+.++.+
T Consensus 174 ~~tiii~th~~~~~ 187 (207)
T cd03369 174 NSTILTIAHRLRTI 187 (207)
T ss_pred CCEEEEEeCCHHHH
Confidence 45678888876543
No 409
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.72 E-value=0.00018 Score=77.15 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccE
Q 014712 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDR 332 (420)
Q Consensus 253 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~ 332 (420)
.+.+|....|.++++||.- ++-|.+..+.+.+.+..+. .+..+|++|++++.+. .+|+
T Consensus 481 ~lARall~~p~ililDEpt----------s~LD~~~~~~i~~~l~~~~-----~~~tvI~isH~~~~~~-------~~d~ 538 (585)
T TIGR01192 481 AIARAILKNAPILVLDEAT----------SALDVETEARVKNAIDALR-----KNRTTFIIAHRLSTVR-------NADL 538 (585)
T ss_pred HHHHHHhcCCCEEEEECCc----------cCCCHHHHHHHHHHHHHHh-----CCCEEEEEEcChHHHH-------cCCE
Confidence 3444555788999999954 3467888888888887653 2456888999875443 4566
Q ss_pred EEEcc
Q 014712 333 KVEFG 337 (420)
Q Consensus 333 ~i~~~ 337 (420)
++.+.
T Consensus 539 i~~l~ 543 (585)
T TIGR01192 539 VLFLD 543 (585)
T ss_pred EEEEE
Confidence 66663
No 410
>PRK05973 replicative DNA helicase; Provisional
Probab=97.72 E-value=0.00039 Score=65.63 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~ 236 (420)
|+.++..++|.|+||+|||+++-.++... |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 77888889999999999999998887643 6666666543
No 411
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.72 E-value=0.00032 Score=67.32 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=30.0
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~ 235 (420)
|++++..++++||||||||+++..+|.. .+.+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 6778888999999999999999988663 2556655554
No 412
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.71 E-value=0.00018 Score=72.65 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=36.7
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.++++||- .++-|......+..++..+.. ..++.+|++|+.++
T Consensus 155 LARaL~~~P~llLLDEP----------~s~LD~~~r~~l~~~L~~l~~---~~g~tiI~vTHd~~ 206 (375)
T PRK09452 155 IARAVVNKPKVLLLDES----------LSALDYKLRKQMQNELKALQR---KLGITFVFVTHDQE 206 (375)
T ss_pred HHHHHhcCCCEEEEeCC----------CCcCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 33445578999999994 445678888888888877642 23567888888764
No 413
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.71 E-value=0.00019 Score=71.66 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=45.2
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC----CcEEEEec-chhhh---------hhhhhhHHHHHHHHHHHHhCCCcEEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIG-SELVQ---------KYVGEGARMVRELFQMARSKKACIVF 266 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~----~~~i~v~~-~~l~~---------~~~g~~~~~v~~~f~~a~~~~p~Il~ 266 (420)
+...+++.||+|+||||+++++.+... ..++.+.- .++.. ..+|.........+..+....|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 345689999999999999999988653 23333321 12211 11222122345566667778999999
Q ss_pred ecCcc
Q 014712 267 FDEVD 271 (420)
Q Consensus 267 iDEiD 271 (420)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99983
No 414
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.71 E-value=0.0004 Score=64.94 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh--------------hh-----------h----
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY--------------VG-----------E---- 245 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~--------------~g-----------~---- 245 (420)
|++++..+++.|+||+|||+++..++... +.+.++++..+-.... .+ +
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 77788889999999999999999887642 6666666654322110 00 0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 246 ~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
.......+...+....++.++||-+..+... .+.+......+..++..+. ..++.++++++.
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~~ 153 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLR----ETGVTTILTSEA 153 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEcc
Confidence 0011111222234456789999998876211 1123444556667777664 345667777764
No 415
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.71 E-value=0.00029 Score=66.38 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=36.3
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
..+....|.++++||- ..+-+......+.+++..+. .+..||++|+.++.+
T Consensus 151 a~al~~~p~llllDEP----------~~gLD~~~~~~l~~~l~~~~-----~g~~vi~~sh~~~~~ 201 (238)
T cd03249 151 ARALLRNPKILLLDEA----------TSALDAESEKLVQEALDRAM-----KGRTTIVIAHRLSTI 201 (238)
T ss_pred HHHHhcCCCEEEEeCc----------cccCCHHHHHHHHHHHHHhc-----CCCEEEEEeCCHHHH
Confidence 3344567899999994 44568888888888887652 245688888876544
No 416
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.71 E-value=0.00026 Score=66.70 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=37.3
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
..|....|.++++||- .++-+......+.+++..+. . +..||++|+.++.+
T Consensus 150 aral~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~~ 200 (237)
T cd03252 150 ARALIHNPRILIFDEA----------TSALDYESEHAIMRNMHDIC----A-GRTVIIIAHRLSTV 200 (237)
T ss_pred HHHHhhCCCEEEEeCC----------cccCCHHHHHHHHHHHHHhc----C-CCEEEEEeCCHHHH
Confidence 3344567899999994 44568888888888888763 2 45688888877644
No 417
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.00025 Score=65.66 Aligned_cols=70 Identities=24% Similarity=0.281 Sum_probs=44.4
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcC--------CcEEEEec-chhhhhhhhhh-------------HHHHHHHHHHHHhC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTD--------ACFIRVIG-SELVQKYVGEG-------------ARMVRELFQMARSK 260 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~--------~~~i~v~~-~~l~~~~~g~~-------------~~~v~~~f~~a~~~ 260 (420)
.+.|+.|||||||||+.|-+|+-+. ..+..++. +++.....|.. .-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 3689999999999999999998542 23333332 23322211111 11122345566789
Q ss_pred CCcEEEecCccc
Q 014712 261 KACIVFFDEVDA 272 (420)
Q Consensus 261 ~p~Il~iDEiD~ 272 (420)
.|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999865
No 418
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.70 E-value=0.00023 Score=66.69 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=35.6
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+....|.++++|| +..+-+......+.+++.++.. ..+..||++|+.++
T Consensus 160 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~ 208 (228)
T PRK10584 160 AFNGRPDVLFADE----------PTGNLDRQTGDKIADLLFSLNR---EHGTTLILVTHDLQ 208 (228)
T ss_pred HHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHH
Confidence 3446788999999 4456688888889888877631 22457888888765
No 419
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=0.0002 Score=69.56 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=36.9
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++|| +..+-+......+.+++.++. ...+..||++|+..+.+
T Consensus 157 al~~~P~llllDE----------Pt~gLD~~~~~~l~~~l~~l~---~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 157 ILAVEPKIIILDE----------STSMLDPAGKEQILKLIRKLK---KKNNLTVISITHDIDEA 207 (282)
T ss_pred HHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 4446889999999 445678888888988888764 12355788888876543
No 420
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00037 Score=71.65 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=40.0
Q ss_pred CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccC
Q 014712 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 260 ~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~ 338 (420)
+...++++|| ++.+-|+...+.+++++-+-- .+-.+|+.|++...+. +||+++.+..
T Consensus 491 ~dapl~lLDE----------PTegLD~~TE~~vL~ll~~~~-----~~kTll~vTHrL~~le-------~~drIivl~~ 547 (573)
T COG4987 491 HDAPLWLLDE----------PTEGLDPITERQVLALLFEHA-----EGKTLLMVTHRLRGLE-------RMDRIIVLDN 547 (573)
T ss_pred cCCCeEEecC----------CcccCChhhHHHHHHHHHHHh-----cCCeEEEEecccccHh-------hcCEEEEEEC
Confidence 3445999999 566778888888887776532 2345888888765444 7778776653
No 421
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.70 E-value=0.00013 Score=78.00 Aligned_cols=66 Identities=30% Similarity=0.359 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCc
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gR 329 (420)
.|-.+.+|....|.|+++||.- ++-|.+....+.+.+..+. .+..+|.+|++++.+. .
T Consensus 482 qRialARall~~~~ililDE~t----------s~lD~~t~~~i~~~l~~~~-----~~~tviiitHr~~~~~-------~ 539 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPT----------EGLDAETERQILELLAEHA-----QNKTVLMITHRLTGLE-------Q 539 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHc-----CCCEEEEEecChhHHH-------h
Confidence 3444555556788999999954 3457788888888777652 2346778888876443 4
Q ss_pred ccEEEEcc
Q 014712 330 LDRKVEFG 337 (420)
Q Consensus 330 fd~~i~~~ 337 (420)
+|+++.+.
T Consensus 540 ~d~i~~l~ 547 (574)
T PRK11160 540 FDRICVMD 547 (574)
T ss_pred CCEEEEEe
Confidence 55555553
No 422
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.69 E-value=0.00018 Score=78.81 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=26.5
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456788899999999999999999999854
No 423
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.69 E-value=0.00024 Score=67.07 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=31.4
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~ 235 (420)
|+.++.-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 78888889999999999999998887643 677777764
No 424
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.00019 Score=66.36 Aligned_cols=51 Identities=25% Similarity=0.394 Sum_probs=36.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.++++||- .++-+......+.+++.++. ...+..+|++|+.++.+
T Consensus 142 al~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 192 (211)
T cd03298 142 VLVRDKPVLLLDEP----------FAALDPALRAEMLDLVLDLH---AETKMTVLMVTHQPEDA 192 (211)
T ss_pred HHhcCCCEEEEcCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 34467899999994 44568888888888888763 12356788888876543
No 425
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0004 Score=65.14 Aligned_cols=134 Identities=10% Similarity=0.072 Sum_probs=90.4
Q ss_pred CCcceeeCCCC-ChHHHHHHHHHHhcCC---------cEEEEecchhhhhh-hhhhHHHHHHHHHHH----HhCCCcEEE
Q 014712 202 PKGVLCYGPPG-TGKTLLARAVANRTDA---------CFIRVIGSELVQKY-VGEGARMVRELFQMA----RSKKACIVF 266 (420)
Q Consensus 202 ~~~vLL~GppG-tGKT~Lakala~~~~~---------~~i~v~~~~l~~~~-~g~~~~~v~~~f~~a----~~~~p~Il~ 266 (420)
...+|+.|..+ +||..++..++..+.+ .+..+....-..+. ..-+-..+|++...+ ..+...|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 45799999998 9999998888876522 23333221100000 001223344444333 345567999
Q ss_pred ecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHH
Q 014712 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (420)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~ 346 (420)
|+++|.+ ..+..+.++..|++ +..++.+|.+|+.+..+.|.+++ |+ ..+.|+.|+...-.+
T Consensus 95 I~~ae~m-----------t~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELM-----------NLNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNE 155 (263)
T ss_pred EechHHh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHH
Confidence 9999998 56667777777764 57788899999999999999999 88 788999998876666
Q ss_pred HHHHHHhc
Q 014712 347 IFKIHTRT 354 (420)
Q Consensus 347 Il~~~~~~ 354 (420)
.....+..
T Consensus 156 ~~~~~~~p 163 (263)
T PRK06581 156 LYSQFIQP 163 (263)
T ss_pred HHHHhccc
Confidence 66555443
No 426
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.69 E-value=0.00037 Score=64.86 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=36.3
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
..+....|.++++||- ..+-+......+.+++.++. . +..+|++|+.++.+
T Consensus 151 aral~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 201 (221)
T cd03244 151 ARALLRKSKILVLDEA----------TASVDPETDALIQKTIREAF----K-DCTVLTIAHRLDTI 201 (221)
T ss_pred HHHHhcCCCEEEEeCc----------cccCCHHHHHHHHHHHHHhc----C-CCEEEEEeCCHHHH
Confidence 3344568899999994 34567888888888888763 2 25688888876544
No 427
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.69 E-value=0.00033 Score=65.65 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=36.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+....|.++++||- .++-|......+.+++.++.. ..+..+|++|+..+.
T Consensus 145 al~~~p~illlDEP----------t~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 145 ALVTRPKLLLLDEP----------TEGIQPSIIKDIGRVIRRLRA---EGGMAILLVEQYLDF 194 (230)
T ss_pred HHhcCCCEEEecCC----------cccCCHHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHH
Confidence 34467899999994 445688888888888887641 235678888887653
No 428
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=0.00033 Score=67.59 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++||- .++-+......+.+++..+.. .++..+|++|+.++.+
T Consensus 156 al~~~p~lllLDEP----------~~gLD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 156 VLALNPEIIIFDES----------TSMLDPKGKREIKKIMVDLRK---TRKKTLISITHDMDEA 206 (271)
T ss_pred HHHcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHH---hcCcEEEEEEechhHH
Confidence 44467899999994 445678888888888887631 2335788888877654
No 429
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.69 E-value=0.00093 Score=75.00 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=87.9
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh-------hhhh---h-----hh---------------hHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL-------VQKY---V-----GE---------------GARMVR 251 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l-------~~~~---~-----g~---------------~~~~v~ 251 (420)
.+-++++||+|.|||+++..++...+ ++..++...- .... + +. ....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34689999999999999999987766 5655544211 0000 0 00 011222
Q ss_pred HHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCc-cccCcCc
Q 014712 252 ELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP-ALLRPGR 329 (420)
Q Consensus 252 ~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~-al~r~gR 329 (420)
.++..... ..|.+|+|||++.+ .++.....+..++..+ ..++.+|+++.....++- .+...
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~----------~~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLI----------TNPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcC----------CChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc--
Confidence 33333222 67889999999987 2345556666776653 455666666654222221 11111
Q ss_pred ccEEEEcc----CCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccc
Q 014712 330 LDRKVEFG----LPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGK 376 (420)
Q Consensus 330 fd~~i~~~----~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sga 376 (420)
+..+.+. ..+.++-.+++...+.. .+ .......|.+.|+|+.-+
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWATA 221 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChHHH
Confidence 1234444 55777777777654422 22 223467888888888653
No 430
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.69 E-value=0.00023 Score=68.44 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=66.1
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEec--------chh---------hhh---hhhh---------
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIG--------SEL---------VQK---YVGE--------- 245 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~--------~~l---------~~~---~~g~--------- 245 (420)
+.+.++..+.|.||+|+|||||++++++.... .-+.+++ ..+ ... ..+.
T Consensus 45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 124 (264)
T PRK13546 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT 124 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 45677888999999999999999999996411 0011110 000 000 0000
Q ss_pred ---------------------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 246 ---------------------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 246 ---------------------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
+....+-.+..|....|.+|++||-. .+.+......+.+++..+.
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt----------~gLD~~~~~~l~~~L~~~~---- 190 (264)
T PRK13546 125 PKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL----------SVGDQTFAQKCLDKIYEFK---- 190 (264)
T ss_pred HHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc----------ccCCHHHHHHHHHHHHHHH----
Confidence 00011122333455678999999943 3567888888888887763
Q ss_pred CCCeEEEEEeCCCCCC
Q 014712 305 RGNIKVLMATNRPDTL 320 (420)
Q Consensus 305 ~~~v~vI~ttn~~~~l 320 (420)
..+..+|++|+..+.+
T Consensus 191 ~~g~tiIiisH~~~~i 206 (264)
T PRK13546 191 EQNKTIFFVSHNLGQV 206 (264)
T ss_pred HCCCEEEEEcCCHHHH
Confidence 2355788888876543
No 431
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.69 E-value=0.00023 Score=66.88 Aligned_cols=49 Identities=24% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+....|.+|++|| +..+-+......+.+++.++. ...+..||++|+.++
T Consensus 128 al~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 128 ALSIRPKVLLLDE----------PFGALDALTRGNLQEELMQIW---EEHRVTVLMVTHDVD 176 (230)
T ss_pred HHHcCCCEEEEcC----------CCcCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 3446789999999 444568888888888887753 123457888888765
No 432
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.68 E-value=0.0002 Score=72.09 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=37.0
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
..|....|.+|++|| +.++-|......+..++.++.. ...++.+|++|+..+.
T Consensus 149 ARAL~~~P~llLLDE----------P~s~LD~~~r~~l~~~l~~l~~--~~~g~til~vTHd~~e 201 (362)
T TIGR03258 149 ARAIAIEPDVLLLDE----------PLSALDANIRANMREEIAALHE--ELPELTILCVTHDQDD 201 (362)
T ss_pred HHHHhcCCCEEEEcC----------ccccCCHHHHHHHHHHHHHHHH--hCCCCEEEEEeCCHHH
Confidence 334557899999999 4445678888888888877641 1125678889987653
No 433
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.68 E-value=0.00011 Score=63.28 Aligned_cols=34 Identities=32% Similarity=0.650 Sum_probs=27.2
Q ss_pred ceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
+++.|||||||||+|+.++..++ ...++...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 68999999999999999999988 44455554443
No 434
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.68 E-value=0.00017 Score=64.12 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---------------CCcEEEEecch-hhhhhhhhhHHHHHHHHHHHHh----C
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---------------DACFIRVIGSE-LVQKYVGEGARMVRELFQMARS----K 260 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---------------~~~~i~v~~~~-l~~~~~g~~~~~v~~~f~~a~~----~ 260 (420)
.++..++.||.|+|||+++++++--+ +...-.+...- +.......+.+. +..+..+.. .
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~-~~~la~~L~~~~~~ 98 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKE-LSALALILALASLK 98 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHH-HHHHHHHHHhcCCC
Confidence 34578999999999999999986422 21111111000 000001111211 111222221 3
Q ss_pred CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.|+++++||+..- .+......+...+.++.. . +..+|++|+.++..
T Consensus 99 ~~~llllDEp~~g----------ld~~~~~~l~~~l~~~~~---~-~~~vii~TH~~~~~ 144 (162)
T cd03227 99 PRPLYILDEIDRG----------LDPRDGQALAEAILEHLV---K-GAQVIVITHLPELA 144 (162)
T ss_pred CCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHh---c-CCEEEEEcCCHHHH
Confidence 7899999997653 355555556555554321 2 45788899876543
No 435
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=0.00023 Score=67.02 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=35.9
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.+|++|| +.++-|......+.+++.++.. ..+..||++|+.++.
T Consensus 150 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tvi~vsH~~~~ 199 (235)
T cd03261 150 ALALDPELLLYDE----------PTAGLDPIASGVIDDLIRSLKK---ELGLTSIMVTHDLDT 199 (235)
T ss_pred HHhcCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHH---hcCcEEEEEecCHHH
Confidence 4446789999999 4445688888888888887631 224568888887653
No 436
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00018 Score=72.70 Aligned_cols=29 Identities=31% Similarity=0.319 Sum_probs=25.0
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
+.+.++..+.|.||+|||||||++++|..
T Consensus 40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 40 LTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34566778999999999999999999985
No 437
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.00015 Score=71.58 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=24.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
.+..+.-+.|.||+||||||+.|.+|.-
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456667999999999999999999984
No 438
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00026 Score=68.48 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++|| +.++.+......+.+++..+. ..+..||++|+..+.+
T Consensus 152 aL~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tili~tH~~~~~ 201 (274)
T PRK13647 152 VLAMDPDVIVLDE----------PMAYLDPRGQETLMEILDRLH----NQGKTVIVATHDVDLA 201 (274)
T ss_pred HHHcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHH
Confidence 4456889999999 444568888889999888764 1256788888876543
No 439
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.67 E-value=0.00018 Score=72.70 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
..|....|.+|++|| +.++-|......+.+++.++. ...+..+|++|+..+
T Consensus 145 AraL~~~P~lLLLDE----------Pts~LD~~~~~~l~~~L~~l~---~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 145 GRTLVAEPSVFLLDE----------PLSNLDAALRVQMRIEISRLH---KRLGRTMIYVTHDQV 195 (369)
T ss_pred HHHHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HHhCCEEEEEeCCHH
Confidence 334556899999999 444567888888888887763 123567888888765
No 440
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.67 E-value=0.00022 Score=68.57 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=30.4
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~ 235 (420)
|+.+...++|.|+||+|||+++..+|... +..+++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 56777889999999999999999887653 556666654
No 441
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00033 Score=64.27 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=23.4
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHH
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~ 224 (420)
+.++...-.-|.||+||||||+.|++-+
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 3455666788999999999999999976
No 442
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=0.00028 Score=70.75 Aligned_cols=52 Identities=27% Similarity=0.303 Sum_probs=36.2
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.++++||- .++-+......+...+..+. ...+..+|.+|+..+
T Consensus 147 LARaL~~~P~lLLLDEP----------~s~LD~~~r~~l~~~l~~l~---~~~g~tii~vTHd~~ 198 (351)
T PRK11432 147 LARALILKPKVLLFDEP----------LSNLDANLRRSMREKIRELQ---QQFNITSLYVTHDQS 198 (351)
T ss_pred HHHHHHcCCCEEEEcCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEcCCHH
Confidence 34455578999999993 44567778888887777663 133567888888764
No 443
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.66 E-value=0.00019 Score=78.62 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=27.2
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
++.++++..+.|.||+|+|||||++.+++..
T Consensus 501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3456788899999999999999999999864
No 444
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=0.00026 Score=66.17 Aligned_cols=108 Identities=26% Similarity=0.362 Sum_probs=69.2
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecc-------------hh--------hh-------------
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGS-------------EL--------VQ------------- 240 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~-------------~l--------~~------------- 240 (420)
+.+..+..+-|.|++|+|||||.|.+|+-.. .--+.+++. ++ ..
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~ 127 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK 127 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHH
Confidence 4456677899999999999999999998542 111222111 00 00
Q ss_pred -----------hhhh------hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc
Q 014712 241 -----------KYVG------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (420)
Q Consensus 241 -----------~~~g------~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 303 (420)
.|.. .+....|-.|..|..-.|.||+|||+=+. ++...++.-...++++-
T Consensus 128 ~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav----------GD~~F~~K~~~rl~e~~--- 194 (249)
T COG1134 128 VDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV----------GDAAFQEKCLERLNELV--- 194 (249)
T ss_pred HHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc----------CCHHHHHHHHHHHHHHH---
Confidence 0110 12334567788888889999999998665 46666666666666552
Q ss_pred CCCCeEEEEEeCCCC
Q 014712 304 ARGNIKVLMATNRPD 318 (420)
Q Consensus 304 ~~~~v~vI~ttn~~~ 318 (420)
..+..+|+.|+..+
T Consensus 195 -~~~~tiv~VSHd~~ 208 (249)
T COG1134 195 -EKNKTIVLVSHDLG 208 (249)
T ss_pred -HcCCEEEEEECCHH
Confidence 12356888888654
No 445
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.66 E-value=0.00032 Score=65.68 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=41.1
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEc
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 336 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~ 336 (420)
+....|.++++||- ..+.+......+.+++.++.. ..+..||++|+..+.+. .+|+++.+
T Consensus 151 al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~~---~~~~tvii~sh~~~~~~-------~~d~i~~l 210 (225)
T PRK10247 151 NLQFMPKVLLLDEI----------TSALDESNKHNVNEIIHRYVR---EQNIAVLWVTHDKDEIN-------HADKVITL 210 (225)
T ss_pred HHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEECChHHHH-------hCCEEEEE
Confidence 44567899999994 445678888888888887631 22456888888765442 34566666
Q ss_pred c
Q 014712 337 G 337 (420)
Q Consensus 337 ~ 337 (420)
.
T Consensus 211 ~ 211 (225)
T PRK10247 211 Q 211 (225)
T ss_pred e
Confidence 3
No 446
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.66 E-value=0.00024 Score=72.39 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=39.3
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+..|....|.+|+||| +..+.+...+..+.++|..+.. .+..||++|+.++.+
T Consensus 150 IArAL~~~P~iLLLDE----------PtsgLD~~~~~~l~~lL~~l~~----~g~TIIivsHdl~~~ 202 (402)
T PRK09536 150 LARALAQATPVLLLDE----------PTASLDINHQVRTLELVRRLVD----DGKTAVAAIHDLDLA 202 (402)
T ss_pred HHHHHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEECCHHHH
Confidence 3445557899999999 4556788888889999988752 345788899876543
No 447
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=0.0003 Score=70.36 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=37.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.+|++|| +.++-|......+.+++.++. ...+..||++|+..+.
T Consensus 154 aL~~~p~iLlLDE----------Pts~LD~~~~~~l~~~L~~l~---~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 154 ALASNPKVLLCDE----------ATSALDPATTRSILELLKDIN---RELGLTIVLITHEMDV 203 (343)
T ss_pred HHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 4456889999999 445568888888988888763 1235678889987654
No 448
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.66 E-value=0.00033 Score=64.46 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=26.1
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 346778889999999999999999999854
No 449
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00011 Score=78.52 Aligned_cols=123 Identities=28% Similarity=0.294 Sum_probs=74.0
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEE-EEecchhhhhhhhhhHHHHHH-----HHHHH---HhCCCcEEEecCcccc
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFI-RVIGSELVQKYVGEGARMVRE-----LFQMA---RSKKACIVFFDEVDAI 273 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i-~v~~~~l~~~~~g~~~~~v~~-----~f~~a---~~~~p~Il~iDEiD~l 273 (420)
-++||.|-||||||.|.+.+++-+...++ .-.++.-.+ -++..+++ +.-.| ....++|.+|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~G----LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAG----LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccC----ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 47999999999999999999986543322 111221111 11111111 00011 1134569999999997
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHhc------CC--cCCCCeEEEEEeCCCC-------------CCCccccCcCcccE
Q 014712 274 GGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDR 332 (420)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~gRfd~ 332 (420)
+......+.+.+++-. |+ .-+.+..|+||+|... .|++.|++ |||.
T Consensus 396 -----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDL 462 (682)
T COG1241 396 -----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDL 462 (682)
T ss_pred -----------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCe
Confidence 4555666777666521 11 1134567888888653 46788999 9999
Q ss_pred EEEc-cCCCHH
Q 014712 333 KVEF-GLPDLE 342 (420)
Q Consensus 333 ~i~~-~~Pd~~ 342 (420)
++.+ ..|+.+
T Consensus 463 ifvl~D~~d~~ 473 (682)
T COG1241 463 IFVLKDDPDEE 473 (682)
T ss_pred eEEecCCCCcc
Confidence 7776 346654
No 450
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00042 Score=71.39 Aligned_cols=121 Identities=26% Similarity=0.362 Sum_probs=77.7
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcC-CcEEEEecchhhh------------------------------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD-ACFIRVIGSELVQ------------------------------------ 240 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i~v~~~~l~~------------------------------------ 240 (420)
.++.+..|-+.|++||||||+.|++.+-.. .--+.+++.++..
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas 453 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSAS 453 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcC
Confidence 456667799999999999999999988542 1123333332210
Q ss_pred ------------------hh-------hhh------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHH
Q 014712 241 ------------------KY-------VGE------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (420)
Q Consensus 241 ------------------~~-------~g~------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (420)
++ +|+ +.+..+-.+.+|--+.|.|+++||.-. .-|.+..
T Consensus 454 ~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS----------~LD~~TE 523 (591)
T KOG0057|consen 454 DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATS----------ALDSETE 523 (591)
T ss_pred HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCccc----------ccchhhH
Confidence 00 222 222334445555556777999999644 3466777
Q ss_pred HHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCC
Q 014712 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 340 (420)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd 340 (420)
+.+...+... .++..+|+..++.+.+. .||+++.+..-.
T Consensus 524 ~~i~~~i~~~-----~~~rTvI~IvH~l~ll~-------~~DkI~~l~nG~ 562 (591)
T KOG0057|consen 524 REILDMIMDV-----MSGRTVIMIVHRLDLLK-------DFDKIIVLDNGT 562 (591)
T ss_pred HHHHHHHHHh-----cCCCeEEEEEecchhHh-------cCCEEEEEECCe
Confidence 7777666542 34557888888887666 888888887543
No 451
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.65 E-value=0.00023 Score=71.38 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=36.6
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.++++||- .++-+......+.+++..+. ...+..+|.+|+.++
T Consensus 145 LARaL~~~P~llLLDEP----------~s~LD~~~r~~l~~~L~~l~---~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 145 LARALATSPGLLLLDEP----------LSALDARVREHLRTEIRQLQ---RRLGVTTIMVTHDQE 196 (353)
T ss_pred HHHHHhcCCCEEEEcCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEcCCHH
Confidence 33345578999999994 44567888888888887663 133567888888764
No 452
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.65 E-value=0.00038 Score=64.75 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=35.8
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.+....|.++++||- ..+-+......+.+++.++.. . ..||++|+..+
T Consensus 153 ~al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~~----~-~tii~~sH~~~ 200 (220)
T cd03245 153 RALLNDPPILLLDEP----------TSAMDMNSEERLKERLRQLLG----D-KTLIIITHRPS 200 (220)
T ss_pred HHHhcCCCEEEEeCc----------cccCCHHHHHHHHHHHHHhcC----C-CEEEEEeCCHH
Confidence 344467899999994 445688888899998887642 2 57888888765
No 453
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.65 E-value=0.00032 Score=66.24 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=35.8
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.++++||- ..+-|......+.+++..+. ..+..+|++|++.+.+
T Consensus 150 al~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~ 199 (240)
T PRK09493 150 ALAVKPKLMLFDEP----------TSALDPELRHEVLKVMQDLA----EEGMTMVIVTHEIGFA 199 (240)
T ss_pred HHhcCCCEEEEcCC----------cccCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHH
Confidence 33467889999994 44567888888888888763 2245688888876543
No 454
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00033 Score=67.51 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=25.0
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
+.++.+.-+-|.||+|+|||||.|.+|.-
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL 51 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGL 51 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCc
Confidence 34566778999999999999999999984
No 455
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.64 E-value=0.00036 Score=64.66 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=36.5
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.++++|| +..+-|......+.+++.++. ..+..||++|+.++.+
T Consensus 146 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tvi~~sH~~~~~ 195 (213)
T cd03235 146 ALVQDPDLLLLDE----------PFAGVDPKTQEDIYELLRELR----REGMTILVVTHDLGLV 195 (213)
T ss_pred HHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHH
Confidence 3446789999999 445568888888888888764 1345788888876533
No 456
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=0.00038 Score=65.77 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=26.2
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.+.++..+.|.||+|+|||||++.+++..
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346778889999999999999999999853
No 457
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.64 E-value=0.00036 Score=66.86 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
.+....|.++++||- .++-+......+.+++.++. ...+..||++|+.++.
T Consensus 146 raL~~~p~lllLDEP----------t~~LD~~~~~~l~~~L~~~~---~~~~~tviivsHd~~~ 196 (257)
T PRK11247 146 RALIHRPGLLLLDEP----------LGALDALTRIEMQDLIESLW---QQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH
Confidence 344567899999994 44568888888888887753 1234568888887653
No 458
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00031 Score=66.04 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=36.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+....|.++++||- ..+.+......+.+++..+.. ..+..+|++|+.++.+
T Consensus 143 al~~~p~lllLDEP----------~~gLD~~~~~~~~~~l~~~~~---~~~~tiii~sH~~~~~ 193 (232)
T PRK10771 143 CLVREQPILLLDEP----------FSALDPALRQEMLTLVSQVCQ---ERQLTLLMVSHSLEDA 193 (232)
T ss_pred HHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEECCHHHH
Confidence 34467899999994 445688888888888877531 2245688888877543
No 459
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.63 E-value=0.0006 Score=62.67 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=32.7
Q ss_pred CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 260 ~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
..|.++++||-.. +.+......+.+++.++. . +..||++|++++.
T Consensus 134 ~~~~illlDEP~~----------~LD~~~~~~l~~~l~~~~----~-~~tiIiitH~~~~ 178 (197)
T cd03278 134 RPSPFCVLDEVDA----------ALDDANVERFARLLKEFS----K-ETQFIVITHRKGT 178 (197)
T ss_pred CCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHhc----c-CCEEEEEECCHHH
Confidence 3557999999543 457888888888888764 1 3568888987654
No 460
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.62 E-value=0.00043 Score=65.90 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+..|....|.++++||- ..+-+......+.+++.++. ...+..||++|+..+.
T Consensus 126 iaraL~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~---~~~~~tiiivsHd~~~ 178 (246)
T cd03237 126 IAACLSKDADIYLLDEP----------SAYLDVEQRLMASKVIRRFA---ENNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 33455578899999994 44567888888888887763 1234678888887643
No 461
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.62 E-value=0.0003 Score=66.44 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=35.9
Q ss_pred HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
....|.++++||- ..+.+......+.+++.++. ...+..||++|+.++.+
T Consensus 145 l~~~p~llllDEP----------~~~LD~~~~~~~~~~l~~~~---~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 145 LAVEPQVLLLDEP----------FGALDAKVRKELRSWLRKLH---DEVHVTTVFVTHDQEEA 194 (237)
T ss_pred HhcCCCEEEEcCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 3457899999994 44578888899998888763 12246688888876543
No 462
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.62 E-value=0.00039 Score=65.65 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+....|.++++|| +..+-+......+.+++.++. ...+..||++|+.++.
T Consensus 167 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~ 216 (236)
T cd03267 167 ALLHEPEILFLDE----------PTIGLDVVAQENIRNFLKEYN---RERGTTVLLTSHYMKD 216 (236)
T ss_pred HHhcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHHHH---hcCCCEEEEEecCHHH
Confidence 4446789999999 455678889999999888763 1234578889987653
No 463
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00031 Score=66.19 Aligned_cols=47 Identities=11% Similarity=0.330 Sum_probs=34.3
Q ss_pred HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
....|.|+++|| +..+-+......+.+++.++. ..+..||++|+.++
T Consensus 152 l~~~p~illlDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~ 198 (237)
T PRK11614 152 LMSQPRLLLLDE----------PSLGLAPIIIQQIFDTIEQLR----EQGMTIFLVEQNAN 198 (237)
T ss_pred HHhCCCEEEEcC----------ccccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCcHH
Confidence 335788999999 445668888888888888764 22456777888764
No 464
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00048 Score=65.14 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=35.9
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.++++||- .++-+......+.+++.++. ..+..+|++|++++.+
T Consensus 155 al~~~p~llilDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~~ 204 (242)
T PRK11124 155 ALMMEPQVLLFDEP----------TAALDPEITAQIVSIIRELA----ETGITQVIVTHEVEVA 204 (242)
T ss_pred HHhcCCCEEEEcCC----------CCcCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHH
Confidence 34457889999994 44568888888989888764 2245688888876543
No 465
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.61 E-value=0.0003 Score=63.12 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=61.4
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh-hhhh----------------hHHHHHHHHHHHHhCCCcEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGE----------------GARMVRELFQMARSKKACIVF 266 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~-~~g~----------------~~~~v~~~f~~a~~~~p~Il~ 266 (420)
.+++.|+||||||++|..++..++.+.+++........ .... ....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 47999999999999999999998877776654432111 0000 001122333221 23456899
Q ss_pred ecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
||-+..+..+..... ........+..++..+.. .+..+|+++|..
T Consensus 82 ID~Lt~~~~n~l~~~--~~~~~~~~l~~li~~L~~----~~~tvVlVs~Ev 126 (170)
T PRK05800 82 VDCLTTWVTNLLFEE--GEEAIAAEIDALLAALQQ----LPAKIILVTNEV 126 (170)
T ss_pred ehhHHHHHHHHhccc--chHHHHHHHHHHHHHHHc----CCCCEEEEEcCC
Confidence 999988855432110 013334455566666652 344566677753
No 466
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.61 E-value=0.00053 Score=64.10 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=35.8
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+....|.+|++|| +..+-+......+.+++..+. . +..+|++|+.++.+
T Consensus 164 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 212 (226)
T cd03248 164 ALIRNPQVLILDE----------ATSALDAESEQQVQQALYDWP----E-RRTVLVIAHRLSTV 212 (226)
T ss_pred HHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHc----C-CCEEEEEECCHHHH
Confidence 3446788999999 444568888888888888764 2 35788888876543
No 467
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.61 E-value=0.00018 Score=66.11 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=25.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~ 236 (420)
.+.+++.||||||||++++.++..+ +..++.+..+
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 3458889999999999999987644 5555555443
No 468
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00041 Score=68.86 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=37.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.+|++||- .++-|...+..+++++..+.. ..+..+|++|+..+.
T Consensus 167 AL~~~P~llilDEP----------ts~LD~~~~~~il~lL~~l~~---~~g~til~iTHdl~~ 216 (326)
T PRK11022 167 AIACRPKLLIADEP----------TTALDVTIQAQIIELLLELQQ---KENMALVLITHDLAL 216 (326)
T ss_pred HHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 34457889999994 455788889999998887742 235678999987653
No 469
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.61 E-value=0.00042 Score=69.68 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=37.0
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
..|....|.||++||- .++-++.....+.+++..+.. ..+..||++|+..+.
T Consensus 141 ARAL~~~p~iLLlDEP----------~saLD~~~r~~l~~~l~~l~~---~~~~Tii~vTHd~~e 192 (363)
T TIGR01186 141 ARALAAEPDILLMDEA----------FSALDPLIRDSMQDELKKLQA---TLQKTIVFITHDLDE 192 (363)
T ss_pred HHHHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 3345578899999994 345688888888888877641 234678888887653
No 470
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.60 E-value=0.00014 Score=69.98 Aligned_cols=100 Identities=18% Similarity=0.275 Sum_probs=60.9
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC---cEEEEec-ch
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVIG-SE 237 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~---~~i~v~~-~~ 237 (420)
....++++++-.....+.+.+++... +....++++.||+||||||+++++...... .++.+.. .|
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred cccccHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 34457777777666666666666552 123567999999999999999999987633 3333331 12
Q ss_pred hhhhh-------hhhhHHHHHHHHHHHHhCCCcEEEecCccc
Q 014712 238 LVQKY-------VGEGARMVRELFQMARSKKACIVFFDEVDA 272 (420)
Q Consensus 238 l~~~~-------~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~ 272 (420)
+.-.. ......-...++..+....|++|++.|+-.
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 21110 011233456677778888999999999853
No 471
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.60 E-value=0.00073 Score=63.29 Aligned_cols=38 Identities=34% Similarity=0.362 Sum_probs=29.8
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~ 235 (420)
|++++..++++|+||+|||+++..++.. .+...++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 7888889999999999999999987643 2455555554
No 472
>PHA02774 E1; Provisional
Probab=97.60 E-value=0.00016 Score=75.57 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=28.9
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEE-Eec
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR-VIG 235 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~-v~~ 235 (420)
++..+.++||||||||||++|.++++.++...+. ++.
T Consensus 431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3334579999999999999999999998655433 553
No 473
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.60 E-value=0.00032 Score=62.87 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=62.5
Q ss_pred ceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh-----------------hhhhHHHHHHHHHHHHhCCCcEEEe
Q 014712 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY-----------------VGEGARMVRELFQMARSKKACIVFF 267 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~-----------------~g~~~~~v~~~f~~a~~~~p~Il~i 267 (420)
+|++|++|+|||++|..++...+.+.+++....-...- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877777777654322110 011122233333211 24679999
Q ss_pred cCcccccCCccCCCCCC-CHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 268 DEVDAIGGARFDDGVGG-DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 268 DEiD~l~~~r~~~~~~~-~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
|-+..+..+-.....+. .......+..++..+. ..+..+|+++|..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~----~~~~~~viVsnEv 126 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR----NKPGTLILVSNEV 126 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH----cCCCcEEEEECCc
Confidence 99888765443221110 1223455556666664 2345567777754
No 474
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.60 E-value=0.00035 Score=69.57 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=66.9
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecchh------hh---hh---------------hh
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSEL------VQ---KY---------------VG 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~~l------~~---~~---------------~g 244 (420)
|+....-+.|+||||||||+|+..+|-.. +...++++...- .. .+ .-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 67777889999999999999999887421 246677765431 00 00 00
Q ss_pred hhH---HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 245 EGA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 245 ~~~---~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
..+ ..+..+-.......+.+|+||-|-.+........ +...+-++.+.+++..+..+....++.||+|.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 011 1122222233346688999999998865432211 12233445566666555444445677677664
No 475
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.59 E-value=0.00068 Score=61.57 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=53.7
Q ss_pred ceeeCCCCChHHHHHHHHHH-----hcCCcE--------------EEEecchhhhhhhhhhHHHHHHHHHHH-HhCCCcE
Q 014712 205 VLCYGPPGTGKTLLARAVAN-----RTDACF--------------IRVIGSELVQKYVGEGARMVRELFQMA-RSKKACI 264 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~-----~~~~~~--------------i~v~~~~l~~~~~g~~~~~v~~~f~~a-~~~~p~I 264 (420)
++|+||.|+|||+++|.++- ..|... ..+...+......+.....++.+.... ....|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 223221 112222222211222222222222211 1247889
Q ss_pred EEecCcccccCCccCCCCCCCHHHH-HHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 265 VFFDEVDAIGGARFDDGVGGDNEVQ-RTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~~-~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+++||...- .+.... ..+..++..+.. ..+..+|++|+..+
T Consensus 82 lllDEp~~g----------~d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRG----------TSTYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCC----------CCHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 999997542 344433 333455554431 22456888888764
No 476
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=0.00048 Score=65.47 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=35.1
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.++++||- .++-+......+.+++.++. . +..+|++|++++.
T Consensus 160 al~~~p~lllLDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~ 207 (250)
T PRK14247 160 ALAFQPEVLLADEP----------TANLDPENTAKIESLFLELK----K-DMTIVLVTHFPQQ 207 (250)
T ss_pred HHhcCCCEEEEcCC----------CccCCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHH
Confidence 33457889999994 44567888888888888763 2 3568888887653
No 477
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.59 E-value=8.2e-05 Score=62.87 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=40.1
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCc--ceeeCCCCChHHHHHHHHHHhc
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKG--VLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~--vLL~GppGtGKT~Lakala~~~ 226 (420)
.|.|+.-+.+.+..++...+.++ .|.+. +-|+|+||||||++++.+|+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 38999999999999888765543 34444 4589999999999999999974
No 478
>PHA02624 large T antigen; Provisional
Probab=97.59 E-value=0.00013 Score=76.69 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=71.6
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r 277 (420)
|++..+.++||||||||||+++.++++.++...+.++++.-... |...-.....+.+||++-.-....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 45556689999999999999999999999777777875543221 221111122388888875332211
Q ss_pred c--CCCCCCCHHHHHHHHHHHHHhcCC-----cC--CCC-----eEEEEEeCCCCCCCccccCcCcccEEEEccC
Q 014712 278 F--DDGVGGDNEVQRTMLEIVNQLDGF-----DA--RGN-----IKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 278 ~--~~~~~~~~~~~~~l~~ll~~l~~~-----~~--~~~-----v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~ 338 (420)
. .++.+-+ -+..|=+.+||- +. ... -..|.|||. ..++..+.- ||-.++.|..
T Consensus 495 ~~Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 0 0111111 123344455553 00 011 236667774 567778877 9988888863
No 479
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.59 E-value=0.00031 Score=73.25 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=89.0
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecch-----------
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE----------- 237 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~----------- 237 (420)
.|-|.+.+|.-|--.+-.-.... .-+...+.-.-+|++.|.||+|||-+.+++++-+...++. ++..
T Consensus 346 sIyGhe~VK~GilL~LfGGv~K~-a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 346 SIYGHELVKAGILLSLFGGVHKS-AGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKASSAAGLTAAVV 423 (764)
T ss_pred cccchHHHHhhHHHHHhCCcccc-CCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcccccccceEEEE
Confidence 35566666655543322111110 0022233344579999999999999999999865433222 1110
Q ss_pred ---hhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc------CC--cCCC
Q 014712 238 ---LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARG 306 (420)
Q Consensus 238 ---l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~ 306 (420)
-...|.-+...+ .-....|-+|||+|++ +..-|.++.+.+++=. |+ .-+.
T Consensus 424 kD~esgdf~iEAGAL--------mLADnGICCIDEFDKM-----------d~~dqvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 424 KDEESGDFTIEAGAL--------MLADNGICCIDEFDKM-----------DVKDQVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred ecCCCCceeeecCcE--------EEccCceEEechhccc-----------ChHhHHHHHHHHHhheehheecceEEeecc
Confidence 001111110000 0123459999999998 3334566666665411 11 1133
Q ss_pred CeEEEEEeCCCC-------------CCCccccCcCcccEEE-EccCCCHHHHHHHHHHHH
Q 014712 307 NIKVLMATNRPD-------------TLDPALLRPGRLDRKV-EFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 307 ~v~vI~ttn~~~-------------~ld~al~r~gRfd~~i-~~~~Pd~~~R~~Il~~~~ 352 (420)
+..||+++|... .+++++++ |||..+ -+.-|++..-..|-++.+
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHH
Confidence 566888998642 46789999 999854 447787766555555444
No 480
>PRK13695 putative NTPase; Provisional
Probab=97.59 E-value=0.0006 Score=61.16 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.2
Q ss_pred cceeeCCCCChHHHHHHHHHHhc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~ 226 (420)
.++|.|++|+|||||++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 481
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.59 E-value=0.00043 Score=65.14 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=36.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++|| +.++-+......+.+++..+.. .+..||++|++++.+
T Consensus 157 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~vsH~~~~~ 206 (236)
T cd03219 157 ALATDPKLLLLDE----------PAAGLNPEETEELAELIRELRE----RGITVLLVEHDMDVV 206 (236)
T ss_pred HHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHHH
Confidence 3346788999999 4445688888899888887641 345688888876543
No 482
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.58 E-value=0.00029 Score=76.69 Aligned_cols=117 Identities=19% Similarity=0.269 Sum_probs=67.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHH---hcCCcEEEEecchhhhh-h---------------hhhhHHHHHHHHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVAN---RTDACFIRVIGSELVQK-Y---------------VGEGARMVRELFQMAR 258 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~---~~~~~~i~v~~~~l~~~-~---------------~g~~~~~v~~~f~~a~ 258 (420)
|+++...++++||||||||+|+..++. ..+...++++..+-... + ....+..+..+-....
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 677788899999999999999976554 33666677765542220 0 1112222223333345
Q ss_pred hCCCcEEEecCcccccC-CccCCCCCC-CHHH-HHHHHHHHHHhcCCcCCCCeEEEEEe
Q 014712 259 SKKACIVFFDEVDAIGG-ARFDDGVGG-DNEV-QRTMLEIVNQLDGFDARGNIKVLMAT 314 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~-~r~~~~~~~-~~~~-~~~l~~ll~~l~~~~~~~~v~vI~tt 314 (420)
...+.+|+||-+..+.+ ...+...+. .... ++.+.+.|..+..+-...++.+|+|-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56789999999999885 222211111 1122 33334555544444345677777764
No 483
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00045 Score=66.99 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=37.5
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+....|.++++|| +.++.+...+..+.+++.++.. ..+..||++|++++.+
T Consensus 158 al~~~p~llllDE----------Pt~gLD~~~~~~l~~~l~~l~~---~~g~tillvtH~~~~~ 208 (280)
T PRK13633 158 ILAMRPECIIFDE----------PTAMLDPSGRREVVNTIKELNK---KYGITIILITHYMEEA 208 (280)
T ss_pred HHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecChHHH
Confidence 3446789999999 4456788888899888887631 2356788888887654
No 484
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.58 E-value=0.00049 Score=64.41 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=26.0
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.+.++..+.|.||+|+|||||++.+++..
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 28 LHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 345678889999999999999999999864
No 485
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0003 Score=66.16 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=23.5
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
.+....-+.|.||+||||||+.|.+-+-
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcc
Confidence 4556667889999999999999999774
No 486
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00041 Score=66.25 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=36.8
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.++++|| +.++-+......+.+++..+. ..+..||++|+.++.+
T Consensus 152 al~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~l~----~~~~tiii~tH~~~~~ 201 (255)
T PRK11231 152 VLAQDTPVVLLDE----------PTTYLDINHQVELMRLMRELN----TQGKTVVTVLHDLNQA 201 (255)
T ss_pred HHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEECCHHHH
Confidence 4446789999999 445678888899999888764 2245788888876543
No 487
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00036 Score=67.58 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
..|....|.+|++|| +..+.|......+.+++.++.. ..+..||++|+.++.+
T Consensus 149 araL~~~p~llilDE----------Pt~gLD~~~~~~l~~~l~~l~~---~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 149 AGVIAMEPQVLVLDE----------PTAGLDPQGVKELIDFLNDLPE---TYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHH
Confidence 334556889999999 4445688888888888887641 2246788888887544
No 488
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.58 E-value=0.0007 Score=63.32 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=35.5
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+....|.++++||- ..+.+......+.+++.++. ..+..+|++|+..+
T Consensus 127 al~~~p~llilDEP----------~~~LD~~~~~~l~~~l~~~~----~~~~tvii~sH~~~ 174 (223)
T TIGR03771 127 ALATRPSVLLLDEP----------FTGLDMPTQELLTELFIELA----GAGTAILMTTHDLA 174 (223)
T ss_pred HHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHH
Confidence 34467899999994 44568888888988888764 23567888888765
No 489
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.57 E-value=0.00049 Score=65.37 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=35.1
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.+|++||- .++-+......+.+++..+. ..+..||++|+.++.
T Consensus 158 al~~~p~lllLDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 158 ALAMRPEVILFDEP----------TSALDPELVGEVLNTIRQLA----QEKRTMVIVTHEMSF 206 (250)
T ss_pred HHhcCCCEEEEeCC----------CccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHH
Confidence 33467889999994 44567888888888888764 224568888887653
No 490
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00037 Score=67.24 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=36.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+....|.+|++||- .++-|......+.+++..+. ..+..||++|+.++.+
T Consensus 150 aL~~~p~lllLDEP----------t~~LD~~~~~~l~~~l~~~~----~~g~tii~vtH~~~~~ 199 (271)
T PRK13638 150 ALVLQARYLLLDEP----------TAGLDPAGRTQMIAIIRRIV----AQGNHVIISSHDIDLI 199 (271)
T ss_pred HHHcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHH
Confidence 34467899999994 44568888888989988764 1245688888876543
No 491
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.57 E-value=0.00049 Score=63.82 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=26.5
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.+.++..+.|.||+|+|||||+++++...
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788899999999999999999999864
No 492
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.57 E-value=0.00053 Score=69.43 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=47.9
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~ 275 (420)
....++++.||+|||||+++.+++... | -.++...++..... ..+. .-..+.+|+|||+..+--
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg--~v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIG--LVGRWDVVAFDEVATLKF 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHh--hhccCCEEEEEcCCCCcC
Confidence 456789999999999999999988762 3 22333333322111 1111 224567999999988632
Q ss_pred CccCCCCCCCHHHHHHHHHHHH
Q 014712 276 ARFDDGVGGDNEVQRTMLEIVN 297 (420)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~ 297 (420)
. ...+....|...+.
T Consensus 275 ~-------~~~~~v~imK~yMe 289 (449)
T TIGR02688 275 A-------KPKELIGILKNYME 289 (449)
T ss_pred C-------chHHHHHHHHHHHH
Confidence 2 23445555555544
No 493
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.57 E-value=0.00034 Score=68.94 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=66.0
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---------cCCcEEEEecchhh---------hhhhh---------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---------TDACFIRVIGSELV---------QKYVG--------------- 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---------~~~~~i~v~~~~l~---------~~~~g--------------- 244 (420)
|+....-+.|+||||||||+++..+|-. .+...++++..+-. ..+--
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 6777888999999999999999887742 24566777654310 00000
Q ss_pred hhH---HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 245 EGA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 245 ~~~---~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
..+ ..+..+........+.+|+||-|-.+....... .+.-.+-+..+.+++..+..+....++.||+|..
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNq 244 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQ 244 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECc
Confidence 011 111222222334578899999999886532221 1112233344555555554444456776666543
No 494
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.57 E-value=0.00057 Score=60.68 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcC
Q 014712 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPG 328 (420)
Q Consensus 249 ~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~g 328 (420)
..|-.+..|-...|.|+|-||- +.+-+.+.-..+..|+=.+. ...+..+|+.|+. |.+-.
T Consensus 152 QQRVAiARAfa~~P~vLfADEP----------TGNLD~~Tg~~iaDLlF~ln---re~G~TlVlVTHD-----~~LA~-- 211 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEP----------TGNLDRATGDKIADLLFALN---RERGTTLVLVTHD-----PQLAA-- 211 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCC----------CCCcchhHHHHHHHHHHHHh---hhcCceEEEEeCC-----HHHHH--
Confidence 3455666777789999999993 33344444445544443332 2345678888884 44544
Q ss_pred cccEEEEcc
Q 014712 329 RLDRKVEFG 337 (420)
Q Consensus 329 Rfd~~i~~~ 337 (420)
|+++.+.+.
T Consensus 212 Rc~R~~r~~ 220 (228)
T COG4181 212 RCDRQLRLR 220 (228)
T ss_pred hhhheeeee
Confidence 888877764
No 495
>PRK04328 hypothetical protein; Provisional
Probab=97.57 E-value=0.00089 Score=63.85 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=29.1
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~ 235 (420)
|++++..++++||||||||+|+..++.+ .|.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 6778888999999999999998876653 2455555543
No 496
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.00042 Score=65.57 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=35.1
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.+|++||- ..+-+......+.+++..+.. ..+..||++|++.+.
T Consensus 145 al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~~---~~g~tii~~sH~~~~ 194 (241)
T PRK14250 145 TLANNPEVLLLDEP----------TSALDPTSTEIIEELIVKLKN---KMNLTVIWITHNMEQ 194 (241)
T ss_pred HHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHH---hCCCEEEEEeccHHH
Confidence 44467899999994 345677888888888877631 224568888887654
No 497
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00042 Score=67.06 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=36.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++||- ..+-+......+..++.++. ...+..||++|+..+.+
T Consensus 154 aL~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~l~---~~~g~tiil~sH~~~~~ 204 (277)
T PRK13642 154 IIALRPEIIILDES----------TSMLDPTGRQEIMRVIHEIK---EKYQLTVLSITHDLDEA 204 (277)
T ss_pred HHHcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 34467899999994 44568888888888887763 12255688888876544
No 498
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.57 E-value=0.00029 Score=69.67 Aligned_cols=117 Identities=17% Similarity=0.219 Sum_probs=65.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecchhhh--hh------hhh---------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ--KY------VGE--------------- 245 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~~l~~--~~------~g~--------------- 245 (420)
|+..+..++++||||||||+++..+|... +...++++..+-.. .. .|.
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 67778889999999999999999998653 33667776544100 00 000
Q ss_pred -hH---HHHHHHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 246 -GA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 246 -~~---~~v~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
.. ..+..+...... ..+.+|+||=|-.+........ +...+.++.+.+++..+..+....++.+|+|..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 00 111122222233 4677999999988754322111 111222444455555444333456777777755
No 499
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00031 Score=67.47 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.++++||- ..+-+......+.+++.++.. ..+..||++|+.++.+
T Consensus 161 al~~~p~lllLDEP----------t~~LD~~~~~~~~~~l~~l~~---~~~~tiii~sH~~~~i 211 (265)
T PRK10575 161 LVAQDSRCLLLDEP----------TSALDIAHQVDVLALVHRLSQ---ERGLTVIAVLHDINMA 211 (265)
T ss_pred HHhcCCCEEEEcCC----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 44567899999994 445688888888888887631 2245688888876533
No 500
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.56 E-value=6.1e-05 Score=78.68 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=46.4
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC-CcEEEEec
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-ACFIRVIG 235 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i~v~~ 235 (420)
.-|+|+.|+++.++++.+.+...... ++ .....++|.||||+|||+||+++|+.+. .+++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~g------l~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQG------LE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHh------cC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 35778999999999999888442211 11 2345688999999999999999999662 34555444
Done!