Query 014712
Match_columns 420
No_of_seqs 478 out of 3232
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 16:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_H 26S protease regulatory 100.0 2.4E-78 8.3E-83 611.9 30.2 394 11-404 22-455 (467)
2 4b4t_J 26S protease regulatory 100.0 2.4E-67 8.2E-72 525.6 33.9 361 33-402 22-392 (405)
3 4b4t_I 26S protease regulatory 100.0 1.7E-63 5.8E-68 499.1 31.3 320 78-401 96-425 (437)
4 4b4t_L 26S protease subunit RP 100.0 1.4E-62 4.9E-67 498.2 35.6 349 37-401 66-424 (437)
5 4b4t_M 26S protease regulatory 100.0 7.2E-63 2.5E-67 499.9 26.5 363 34-401 30-424 (434)
6 4b4t_K 26S protease regulatory 100.0 3E-61 1E-65 487.7 33.7 357 33-398 46-413 (428)
7 3cf2_A TER ATPase, transitiona 100.0 3.3E-44 1.1E-48 386.9 14.9 229 152-380 461-689 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.2E-41 4.3E-46 366.8 18.7 217 160-379 196-412 (806)
9 3cf0_A Transitional endoplasmi 100.0 1.5E-37 5.3E-42 302.6 17.7 222 159-380 6-227 (301)
10 2x8a_A Nuclear valosin-contain 100.0 1.9E-37 6.4E-42 298.2 15.0 216 161-379 3-223 (274)
11 2ce7_A Cell division protein F 100.0 3E-36 1E-40 309.5 22.7 237 162-399 10-256 (476)
12 3h4m_A Proteasome-activating n 100.0 7.6E-36 2.6E-40 287.2 21.7 247 156-402 5-261 (285)
13 1lv7_A FTSH; alpha/beta domain 100.0 4E-35 1.4E-39 278.5 22.8 242 157-399 1-252 (257)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.5E-35 1.2E-39 288.7 19.0 215 159-379 3-220 (322)
15 3eie_A Vacuolar protein sortin 100.0 3.8E-35 1.3E-39 288.3 19.0 217 157-379 7-225 (322)
16 2dhr_A FTSH; AAA+ protein, hex 100.0 9.2E-34 3.1E-38 292.6 20.9 237 163-400 26-272 (499)
17 2qp9_X Vacuolar protein sortin 100.0 2.1E-34 7.3E-39 286.8 15.6 220 154-379 37-258 (355)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.3E-33 4.4E-38 267.8 19.9 239 163-402 1-252 (262)
19 3hu3_A Transitional endoplasmi 100.0 6.4E-33 2.2E-37 286.5 20.1 216 161-379 197-412 (489)
20 1ixz_A ATP-dependent metallopr 100.0 1.8E-32 6.3E-37 259.7 21.6 220 159-379 7-226 (254)
21 2zan_A Vacuolar protein sortin 100.0 5.2E-33 1.8E-37 284.7 15.0 220 155-380 121-343 (444)
22 1iy2_A ATP-dependent metallopr 100.0 5.5E-31 1.9E-35 253.2 22.5 220 159-379 31-250 (278)
23 1ypw_A Transitional endoplasmi 100.0 8.6E-34 2.9E-38 309.5 0.1 222 158-379 467-688 (806)
24 3b9p_A CG5977-PA, isoform A; A 100.0 4.4E-31 1.5E-35 255.6 17.3 218 156-379 9-230 (297)
25 3d8b_A Fidgetin-like protein 1 100.0 1.1E-30 3.7E-35 260.2 18.4 240 157-402 73-337 (357)
26 2r62_A Cell division protease 100.0 5.4E-33 1.8E-37 265.1 1.4 218 161-379 4-223 (268)
27 3vfd_A Spastin; ATPase, microt 100.0 5E-30 1.7E-34 258.2 19.6 223 151-379 98-323 (389)
28 1ypw_A Transitional endoplasmi 100.0 9.6E-29 3.3E-33 269.7 19.1 216 161-379 197-412 (806)
29 3t15_A Ribulose bisphosphate c 99.9 3.4E-28 1.2E-32 235.8 11.5 177 197-379 31-221 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 1.7E-26 5.7E-31 237.2 -4.1 203 162-382 31-260 (456)
31 3syl_A Protein CBBX; photosynt 99.8 5.1E-21 1.7E-25 185.6 13.5 188 169-369 32-235 (309)
32 3pfi_A Holliday junction ATP-d 99.8 1.6E-19 5.6E-24 177.3 18.8 191 156-375 17-221 (338)
33 1g41_A Heat shock protein HSLU 99.8 5.1E-21 1.8E-25 194.0 5.8 168 169-348 16-188 (444)
34 1hqc_A RUVB; extended AAA-ATPa 99.8 9.6E-19 3.3E-23 170.5 18.4 189 159-375 3-205 (324)
35 1jbk_A CLPB protein; beta barr 99.8 3.4E-19 1.2E-23 158.7 9.4 164 159-348 13-194 (195)
36 1d2n_A N-ethylmaleimide-sensit 99.8 1E-18 3.5E-23 166.7 13.3 195 168-374 33-230 (272)
37 3uk6_A RUVB-like 2; hexameric 99.8 1.1E-18 3.8E-23 173.1 13.9 209 163-398 39-329 (368)
38 3u61_B DNA polymerase accessor 99.8 3E-18 1E-22 167.5 16.5 184 155-375 13-210 (324)
39 2chg_A Replication factor C sm 99.8 1.2E-17 4.2E-22 152.1 18.0 182 156-375 5-198 (226)
40 3hws_A ATP-dependent CLP prote 99.8 3.7E-18 1.3E-22 169.8 15.0 179 170-350 17-267 (363)
41 1ofh_A ATP-dependent HSL prote 99.8 3.1E-18 1.1E-22 165.4 12.2 178 169-350 16-213 (310)
42 1sxj_A Activator 1 95 kDa subu 99.8 1.9E-18 6.4E-23 180.0 11.0 199 154-372 25-243 (516)
43 3pxi_A Negative regulator of g 99.7 1.1E-18 3.9E-23 189.6 8.8 162 168-354 491-677 (758)
44 3m6a_A ATP-dependent protease 99.7 1E-18 3.5E-23 182.9 7.5 170 165-352 78-266 (543)
45 3te6_A Regulatory protein SIR3 99.7 4.2E-18 1.5E-22 166.0 9.8 160 170-355 22-214 (318)
46 1l8q_A Chromosomal replication 99.7 7.1E-17 2.4E-21 157.8 17.9 182 163-372 6-199 (324)
47 2p65_A Hypothetical protein PF 99.7 1E-17 3.4E-22 149.0 10.2 158 158-340 12-187 (187)
48 3pxg_A Negative regulator of g 99.7 7.1E-18 2.4E-22 173.5 10.0 179 157-376 169-367 (468)
49 3pvs_A Replication-associated 99.7 4.2E-17 1.4E-21 166.6 14.7 178 157-375 15-209 (447)
50 1sxj_D Activator 1 41 kDa subu 99.7 5.6E-17 1.9E-21 159.5 14.3 184 155-376 24-230 (353)
51 1sxj_E Activator 1 40 kDa subu 99.7 9.9E-17 3.4E-21 158.2 15.7 183 157-375 3-231 (354)
52 2v1u_A Cell division control p 99.7 1E-16 3.4E-21 159.1 15.7 185 166-371 17-236 (387)
53 1iqp_A RFCS; clamp loader, ext 99.7 1.4E-16 4.7E-21 154.8 16.2 186 156-375 13-206 (327)
54 2chq_A Replication factor C sm 99.7 2.6E-17 9E-22 159.3 11.0 186 156-375 5-198 (319)
55 1njg_A DNA polymerase III subu 99.7 7.1E-17 2.4E-21 148.7 13.4 182 157-375 12-222 (250)
56 2z4s_A Chromosomal replication 99.7 1.6E-16 5.3E-21 162.2 16.5 184 162-373 99-298 (440)
57 1sxj_B Activator 1 37 kDa subu 99.7 1.3E-16 4.3E-21 154.8 15.0 184 156-377 9-205 (323)
58 1qvr_A CLPB protein; coiled co 99.7 3.1E-17 1.1E-21 180.4 10.7 192 158-375 160-373 (854)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 3.2E-16 1.1E-20 170.3 17.1 163 169-354 459-668 (758)
60 3pxi_A Negative regulator of g 99.7 5.3E-17 1.8E-21 176.4 10.3 177 157-374 169-365 (758)
61 4fcw_A Chaperone protein CLPB; 99.7 4.5E-16 1.5E-20 150.6 15.6 170 168-354 17-231 (311)
62 1um8_A ATP-dependent CLP prote 99.7 4.1E-16 1.4E-20 155.7 15.3 179 169-349 22-283 (376)
63 1r6b_X CLPA protein; AAA+, N-t 99.7 1.7E-16 5.8E-21 172.5 13.1 195 157-376 175-391 (758)
64 2qby_B CDC6 homolog 3, cell di 99.7 2.9E-16 1E-20 156.2 12.7 179 168-375 20-236 (384)
65 1g8p_A Magnesium-chelatase 38 99.7 1.2E-15 4.2E-20 149.9 16.2 163 160-350 16-230 (350)
66 1jr3_A DNA polymerase III subu 99.6 1.3E-15 4.4E-20 150.9 15.1 182 157-375 5-215 (373)
67 3bos_A Putative DNA replicatio 99.6 2.6E-15 9E-20 138.9 14.7 173 163-372 23-208 (242)
68 1sxj_C Activator 1 40 kDa subu 99.6 3.2E-15 1.1E-19 147.2 15.9 181 155-373 12-204 (340)
69 2r44_A Uncharacterized protein 99.6 4.5E-16 1.5E-20 152.5 9.0 166 159-354 18-200 (331)
70 1in4_A RUVB, holliday junction 99.6 1.6E-14 5.4E-19 142.1 18.8 190 157-375 14-217 (334)
71 1qvr_A CLPB protein; coiled co 99.6 5E-15 1.7E-19 162.9 13.9 166 167-353 557-771 (854)
72 2qby_A CDC6 homolog 1, cell di 99.6 5.7E-15 1.9E-19 146.2 12.8 188 165-375 17-239 (386)
73 2bjv_A PSP operon transcriptio 99.6 2.4E-14 8.3E-19 135.7 14.8 161 165-352 3-194 (265)
74 1fnn_A CDC6P, cell division co 99.6 1.6E-14 5.6E-19 143.5 13.9 184 166-373 15-230 (389)
75 3n70_A Transport activator; si 99.5 2.3E-14 8E-19 123.7 10.0 112 169-317 2-116 (145)
76 3co5_A Putative two-component 99.5 6.6E-15 2.2E-19 127.0 6.4 112 169-317 5-116 (143)
77 3cmw_A Protein RECA, recombina 99.5 2.2E-14 7.6E-19 164.5 9.2 155 162-317 1014-1218(1706)
78 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 7.6E-14 2.6E-18 144.0 10.0 155 169-352 23-196 (500)
79 1a5t_A Delta prime, HOLB; zinc 99.5 7.2E-13 2.5E-17 130.2 14.7 170 172-379 6-203 (334)
80 1ojl_A Transcriptional regulat 99.4 1.8E-13 6E-18 132.9 9.9 156 169-353 3-191 (304)
81 3f9v_A Minichromosome maintena 99.4 1.7E-13 5.7E-18 144.8 9.4 166 169-354 296-492 (595)
82 2wg5_A General control protein 99.4 8.6E-13 2.9E-17 108.1 10.5 102 36-160 7-108 (109)
83 3ec2_A DNA replication protein 99.4 1.2E-12 4.1E-17 116.6 10.4 132 162-318 4-144 (180)
84 2gno_A DNA polymerase III, gam 99.4 2.3E-12 8E-17 125.1 13.2 142 172-352 1-152 (305)
85 1w5s_A Origin recognition comp 99.2 7.1E-11 2.4E-15 118.1 12.8 190 166-371 20-250 (412)
86 4akg_A Glutathione S-transfera 99.2 5.6E-11 1.9E-15 141.9 13.4 139 201-354 1266-1433(2695)
87 3k1j_A LON protease, ATP-depen 99.2 1.1E-10 3.9E-15 123.4 13.2 54 159-227 32-85 (604)
88 2kjq_A DNAA-related protein; s 99.2 2.1E-11 7.1E-16 105.8 5.7 101 201-332 35-141 (149)
89 2qen_A Walker-type ATPase; unk 99.1 1.8E-09 6.2E-14 105.1 18.6 186 162-376 6-241 (350)
90 2w58_A DNAI, primosome compone 99.1 1.5E-10 5.2E-15 104.7 8.8 100 163-273 20-127 (202)
91 2fna_A Conserved hypothetical 99.1 2.8E-09 9.4E-14 103.9 18.3 182 162-376 7-245 (357)
92 1ny5_A Transcriptional regulat 99.0 1.1E-09 3.7E-14 109.7 9.7 180 167-375 136-354 (387)
93 2vhj_A Ntpase P4, P4; non- hyd 99.0 1.5E-10 5.2E-15 112.1 2.8 122 198-324 119-242 (331)
94 2qgz_A Helicase loader, putati 98.9 1.1E-09 3.6E-14 106.4 6.4 129 164-317 120-258 (308)
95 3h43_A Proteasome-activating n 98.8 5.8E-09 2E-13 81.1 6.6 69 76-148 9-77 (85)
96 3dzd_A Transcriptional regulat 98.8 9.2E-09 3.1E-13 102.3 9.2 180 168-375 129-345 (368)
97 3kw6_A 26S protease regulatory 98.7 6.8E-09 2.3E-13 79.7 4.7 64 337-400 1-74 (78)
98 1svm_A Large T antigen; AAA+ f 98.7 6.7E-09 2.3E-13 103.4 5.8 120 197-338 164-284 (377)
99 2krk_A 26S protease regulatory 98.7 8.1E-09 2.8E-13 80.9 4.1 65 336-400 8-82 (86)
100 2r2a_A Uncharacterized protein 98.7 1.2E-08 4.2E-13 92.6 5.9 125 204-341 7-155 (199)
101 4akg_A Glutathione S-transfera 98.7 1.1E-07 3.6E-12 114.1 15.4 126 202-348 645-789 (2695)
102 3cmu_A Protein RECA, recombina 98.7 7E-08 2.4E-12 112.4 11.8 124 190-313 1412-1560(2050)
103 1tue_A Replication protein E1; 98.6 1.8E-08 6.2E-13 91.4 4.2 33 199-231 55-87 (212)
104 3f8t_A Predicted ATPase involv 98.6 4.8E-08 1.7E-12 98.9 5.9 147 170-342 215-384 (506)
105 3vkg_A Dynein heavy chain, cyt 98.5 4.9E-07 1.7E-11 109.2 12.6 138 202-353 1304-1470(3245)
106 1ye8_A Protein THEP1, hypothet 98.5 6.9E-07 2.4E-11 79.5 9.9 121 204-341 2-165 (178)
107 1u0j_A DNA replication protein 98.4 2.7E-07 9.3E-12 87.1 7.3 120 201-350 103-249 (267)
108 3vlf_B 26S protease regulatory 98.4 1.1E-07 3.9E-12 74.6 3.7 64 340-403 2-75 (88)
109 3aji_B S6C, proteasome (prosom 98.4 1.9E-07 6.4E-12 72.4 4.6 65 340-404 2-76 (83)
110 2ehv_A Hypothetical protein PH 98.4 1.5E-06 5.3E-11 80.3 10.0 129 198-337 26-206 (251)
111 2w0m_A SSO2452; RECA, SSPF, un 98.3 2E-06 7E-11 78.3 10.3 109 198-317 19-168 (235)
112 1n0w_A DNA repair protein RAD5 98.3 2.8E-06 9.7E-11 78.2 9.6 120 198-318 20-175 (243)
113 3vkg_A Dynein heavy chain, cyt 98.3 4.5E-06 1.6E-10 101.0 13.4 125 203-348 605-749 (3245)
114 2zr9_A Protein RECA, recombina 98.2 1.2E-06 3.9E-11 86.4 6.8 78 198-275 57-153 (349)
115 3hr8_A Protein RECA; alpha and 98.2 1.7E-06 5.9E-11 85.2 7.8 118 198-315 57-196 (356)
116 3m9b_A Proteasome-associated A 98.2 4.5E-06 1.5E-10 76.7 9.6 74 73-153 87-160 (251)
117 1z6t_A APAF-1, apoptotic prote 98.2 1.4E-05 5E-10 83.6 14.8 170 167-376 123-323 (591)
118 2cvh_A DNA repair and recombin 98.2 2.1E-06 7.2E-11 77.8 7.2 40 198-237 16-55 (220)
119 1xp8_A RECA protein, recombina 98.2 4.1E-06 1.4E-10 82.9 9.7 119 198-316 70-210 (366)
120 1jr3_D DNA polymerase III, del 98.2 5E-06 1.7E-10 81.2 9.6 144 201-372 17-176 (343)
121 3cmu_A Protein RECA, recombina 98.1 2.5E-06 8.7E-11 99.5 7.4 131 187-317 714-869 (2050)
122 3sfz_A APAF-1, apoptotic pepti 98.1 2.3E-05 8E-10 88.4 15.2 172 165-376 121-323 (1249)
123 1u94_A RECA protein, recombina 98.1 4.8E-06 1.7E-10 82.1 7.8 78 198-275 59-155 (356)
124 3upu_A ATP-dependent DNA helic 98.1 7.2E-06 2.5E-10 83.6 8.5 61 152-226 8-69 (459)
125 3gfo_A Cobalt import ATP-bindi 98.0 2E-05 6.7E-10 75.0 10.5 54 254-320 154-207 (275)
126 2z43_A DNA repair and recombin 98.0 4.9E-06 1.7E-10 80.9 6.2 118 198-316 103-257 (324)
127 4g1u_C Hemin import ATP-bindin 98.0 1.5E-05 5E-10 75.5 9.0 54 252-318 150-209 (266)
128 4a74_A DNA repair and recombin 98.0 6.1E-06 2.1E-10 75.2 6.2 39 198-236 21-68 (231)
129 1vpl_A ABC transporter, ATP-bi 98.0 3.8E-05 1.3E-09 72.2 11.5 49 256-318 159-207 (256)
130 3lda_A DNA repair protein RAD5 98.0 1E-05 3.5E-10 81.0 7.8 119 198-317 174-328 (400)
131 1v5w_A DMC1, meiotic recombina 98.0 8.5E-06 2.9E-10 79.9 6.8 119 198-317 118-274 (343)
132 3rlf_A Maltose/maltodextrin im 98.0 2.6E-05 8.8E-10 77.4 10.2 53 253-318 143-195 (381)
133 2ff7_A Alpha-hemolysin translo 98.0 3.5E-05 1.2E-09 72.0 10.3 51 254-319 156-206 (247)
134 3tui_C Methionine import ATP-b 97.9 3.2E-05 1.1E-09 76.3 10.4 52 254-318 174-225 (366)
135 3tif_A Uncharacterized ABC tra 97.9 3.8E-05 1.3E-09 71.2 10.2 52 254-318 156-207 (235)
136 3nh6_A ATP-binding cassette SU 97.9 1.6E-05 5.6E-10 76.7 7.6 53 251-318 198-250 (306)
137 2dzn_B 26S protease regulatory 97.9 9.9E-07 3.4E-11 68.2 -0.9 58 342-399 1-68 (82)
138 2yz2_A Putative ABC transporte 97.9 7.4E-05 2.5E-09 70.5 11.9 53 255-321 150-202 (266)
139 1pzn_A RAD51, DNA repair and r 97.9 1.4E-05 4.6E-10 78.7 6.9 41 197-237 126-175 (349)
140 2dr3_A UPF0273 protein PH0284; 97.9 3.4E-05 1.2E-09 70.9 9.2 39 198-236 19-60 (247)
141 2yyz_A Sugar ABC transporter, 97.9 5.3E-05 1.8E-09 74.7 10.8 53 253-318 143-195 (359)
142 2pcj_A ABC transporter, lipopr 97.9 4E-05 1.4E-09 70.5 9.3 48 257-318 154-201 (224)
143 3fvq_A Fe(3+) IONS import ATP- 97.9 5E-05 1.7E-09 74.8 10.5 54 252-318 147-200 (359)
144 2ghi_A Transport protein; mult 97.9 6.1E-05 2.1E-09 70.9 10.5 52 254-320 166-217 (260)
145 1z47_A CYSA, putative ABC-tran 97.9 4.8E-05 1.6E-09 74.9 10.2 52 254-318 156-207 (355)
146 2ixe_A Antigen peptide transpo 97.9 2.9E-05 9.9E-10 73.6 8.3 53 253-318 166-218 (271)
147 2cbz_A Multidrug resistance-as 97.9 3.1E-05 1.1E-09 71.9 8.3 58 251-320 135-192 (237)
148 3io5_A Recombination and repai 97.9 1.9E-05 6.6E-10 76.2 6.9 117 198-315 25-170 (333)
149 2a5y_B CED-4; apoptosis; HET: 97.8 9.7E-05 3.3E-09 76.9 12.5 168 171-376 131-332 (549)
150 2d2e_A SUFC protein; ABC-ATPas 97.8 4.1E-05 1.4E-09 71.6 8.4 49 257-319 157-205 (250)
151 3jvv_A Twitching mobility prot 97.8 3.6E-05 1.2E-09 75.9 8.3 98 201-319 122-233 (356)
152 2onk_A Molybdate/tungstate ABC 97.8 4.7E-05 1.6E-09 70.8 8.7 52 254-318 137-188 (240)
153 2olj_A Amino acid ABC transpor 97.8 9.9E-05 3.4E-09 69.6 10.9 49 256-318 172-220 (263)
154 2it1_A 362AA long hypothetical 97.8 5.1E-05 1.7E-09 74.9 9.2 52 254-318 144-195 (362)
155 1g6h_A High-affinity branched- 97.8 7.4E-05 2.5E-09 70.2 9.9 50 257-320 167-216 (257)
156 1v43_A Sugar-binding transport 97.8 5.4E-05 1.8E-09 75.0 9.3 52 254-318 152-203 (372)
157 1nlf_A Regulatory protein REPA 97.8 3.2E-05 1.1E-09 73.3 7.2 28 198-225 26-53 (279)
158 2nq2_C Hypothetical ABC transp 97.8 0.00011 3.6E-09 69.0 10.6 52 254-318 139-190 (253)
159 3d31_A Sulfate/molybdate ABC t 97.8 7.7E-05 2.6E-09 73.2 10.0 52 254-318 138-189 (348)
160 2qi9_C Vitamin B12 import ATP- 97.8 6.9E-05 2.4E-09 70.1 9.1 48 257-318 140-194 (249)
161 2b8t_A Thymidine kinase; deoxy 97.8 4.7E-05 1.6E-09 70.0 7.7 71 202-273 12-101 (223)
162 2eyu_A Twitching motility prot 97.8 3E-05 1E-09 73.1 6.5 72 199-270 22-107 (261)
163 4gp7_A Metallophosphoesterase; 97.8 3.2E-06 1.1E-10 74.3 -0.2 23 199-221 6-28 (171)
164 1qhx_A CPT, protein (chloramph 97.8 2E-05 6.8E-10 69.0 4.7 37 202-238 3-39 (178)
165 2i1q_A DNA repair and recombin 97.8 2.1E-05 7.2E-10 76.2 5.3 117 198-315 94-257 (322)
166 4a82_A Cystic fibrosis transme 97.7 6.1E-05 2.1E-09 79.0 8.9 55 251-320 485-539 (578)
167 1ji0_A ABC transporter; ATP bi 97.7 7.6E-05 2.6E-09 69.4 8.6 48 257-318 153-200 (240)
168 2orw_A Thymidine kinase; TMTK, 97.7 8.9E-06 3E-10 72.6 1.9 31 203-233 4-37 (184)
169 1g29_1 MALK, maltose transport 97.7 8.7E-05 3E-09 73.5 9.1 52 254-318 150-201 (372)
170 1b0u_A Histidine permease; ABC 97.7 0.00015 5.1E-09 68.3 10.0 48 257-318 167-214 (262)
171 3qf4_B Uncharacterized ABC tra 97.7 7.5E-05 2.6E-09 78.7 8.8 56 250-320 498-553 (598)
172 3vaa_A Shikimate kinase, SK; s 97.7 1.8E-05 6.1E-10 71.1 3.4 36 198-233 21-56 (199)
173 3gd7_A Fusion complex of cysti 97.7 6.1E-05 2.1E-09 75.1 7.2 55 249-318 161-215 (390)
174 1sgw_A Putative ABC transporte 97.7 8.6E-05 2.9E-09 67.8 7.7 52 256-321 146-197 (214)
175 3qf4_A ABC transporter, ATP-bi 97.6 8.1E-05 2.8E-09 78.3 8.1 54 251-319 487-540 (587)
176 2zts_A Putative uncharacterize 97.6 0.00015 5.1E-09 66.6 9.1 38 198-235 26-67 (251)
177 3b5x_A Lipid A export ATP-bind 97.6 0.00016 5.4E-09 76.0 10.2 51 254-319 491-541 (582)
178 2zu0_C Probable ATP-dependent 97.6 0.00022 7.4E-09 67.4 10.1 48 258-319 179-226 (267)
179 1oxx_K GLCV, glucose, ABC tran 97.6 0.00013 4.4E-09 71.8 8.8 52 254-318 151-202 (353)
180 3b60_A Lipid A export ATP-bind 97.6 0.00015 5.1E-09 76.1 9.5 52 254-320 491-542 (582)
181 1cr0_A DNA primase/helicase; R 97.6 0.00011 3.9E-09 69.9 7.8 38 197-234 30-71 (296)
182 3trf_A Shikimate kinase, SK; a 97.6 2.9E-05 9.8E-10 68.5 3.3 32 202-233 5-36 (185)
183 1zp6_A Hypothetical protein AT 97.6 3.2E-05 1.1E-09 68.5 3.4 40 199-238 6-45 (191)
184 2ihy_A ABC transporter, ATP-bi 97.6 0.00012 3.9E-09 69.8 7.4 50 257-320 175-226 (279)
185 1tf7_A KAIC; homohexamer, hexa 97.6 0.00035 1.2E-08 72.3 11.6 114 198-320 35-188 (525)
186 2rhm_A Putative kinase; P-loop 97.6 3.8E-05 1.3E-09 67.9 3.7 34 199-232 2-35 (193)
187 2iut_A DNA translocase FTSK; n 97.6 0.00058 2E-08 70.9 13.0 74 263-349 345-420 (574)
188 2pt7_A CAG-ALFA; ATPase, prote 97.6 5.3E-05 1.8E-09 73.9 4.9 72 200-271 169-250 (330)
189 2r6a_A DNAB helicase, replicat 97.6 0.00016 5.6E-09 73.4 8.7 38 198-235 199-240 (454)
190 2pjz_A Hypothetical protein ST 97.5 0.00039 1.3E-08 65.5 10.5 49 254-319 139-187 (263)
191 1tf7_A KAIC; homohexamer, hexa 97.5 0.00033 1.1E-08 72.5 10.8 110 198-317 277-417 (525)
192 4f4c_A Multidrug resistance pr 97.5 0.00017 5.8E-09 82.6 8.9 32 196-227 438-469 (1321)
193 2p5t_B PEZT; postsegregational 97.5 0.00025 8.7E-09 66.1 8.4 40 199-238 29-68 (253)
194 1kag_A SKI, shikimate kinase I 97.5 7E-05 2.4E-09 65.1 4.2 30 202-231 4-33 (173)
195 1gvn_B Zeta; postsegregational 97.5 0.00024 8.2E-09 67.8 8.2 39 200-238 31-69 (287)
196 3iij_A Coilin-interacting nucl 97.5 6.5E-05 2.2E-09 66.0 3.9 34 200-233 9-42 (180)
197 2ewv_A Twitching motility prot 97.5 0.00019 6.4E-09 71.2 7.5 76 195-270 129-218 (372)
198 3cmw_A Protein RECA, recombina 97.5 0.00023 7.7E-09 82.5 9.0 117 200-316 1429-1567(1706)
199 3thx_B DNA mismatch repair pro 97.4 0.00045 1.5E-08 75.9 10.9 109 199-320 670-799 (918)
200 1y63_A LMAJ004144AAA protein; 97.4 5.8E-05 2E-09 66.8 3.2 33 200-232 8-41 (184)
201 4f4c_A Multidrug resistance pr 97.4 0.00026 9E-09 81.1 9.0 31 196-226 1099-1129(1321)
202 2pze_A Cystic fibrosis transme 97.4 0.00036 1.2E-08 64.2 8.4 29 198-226 30-58 (229)
203 3kb2_A SPBC2 prophage-derived 97.4 8.4E-05 2.9E-09 64.3 3.7 31 204-234 3-33 (173)
204 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00031 1.1E-08 65.8 7.8 38 202-239 4-44 (260)
205 1g5t_A COB(I)alamin adenosyltr 97.4 0.00089 3E-08 60.1 10.2 117 203-337 29-178 (196)
206 1yqt_A RNAse L inhibitor; ATP- 97.4 0.00038 1.3E-08 72.3 9.0 55 250-318 165-219 (538)
207 1mv5_A LMRA, multidrug resista 97.4 0.00012 4.2E-09 68.1 4.6 29 197-225 23-51 (243)
208 3ozx_A RNAse L inhibitor; ATP 97.4 0.00053 1.8E-08 71.2 9.9 107 199-318 291-447 (538)
209 2q6t_A DNAB replication FORK h 97.4 0.00036 1.2E-08 70.7 8.4 38 198-235 196-237 (444)
210 1via_A Shikimate kinase; struc 97.4 0.0001 3.5E-09 64.5 3.8 29 204-232 6-34 (175)
211 3j16_B RLI1P; ribosome recycli 97.4 0.00054 1.9E-08 72.1 9.8 53 253-319 231-283 (608)
212 2iyv_A Shikimate kinase, SK; t 97.3 9.6E-05 3.3E-09 65.1 3.4 30 204-233 4-33 (184)
213 3bh0_A DNAB-like replicative h 97.3 0.00062 2.1E-08 65.7 9.4 38 198-235 64-104 (315)
214 1vma_A Cell division protein F 97.3 0.0019 6.6E-08 62.1 12.8 73 200-272 102-197 (306)
215 2ius_A DNA translocase FTSK; n 97.3 0.00073 2.5E-08 69.5 10.2 75 262-349 297-374 (512)
216 3dm5_A SRP54, signal recogniti 97.3 0.0014 4.9E-08 66.1 12.1 73 201-273 99-194 (443)
217 1zuh_A Shikimate kinase; alpha 97.3 0.00015 5E-09 62.9 3.8 31 203-233 8-38 (168)
218 3thx_A DNA mismatch repair pro 97.3 0.0008 2.7E-08 74.1 10.4 105 201-318 661-786 (934)
219 2yl4_A ATP-binding cassette SU 97.3 0.00024 8.2E-09 74.7 5.8 50 254-318 494-543 (595)
220 3cm0_A Adenylate kinase; ATP-b 97.2 0.00012 4.1E-09 64.4 2.9 30 202-231 4-33 (186)
221 2c9o_A RUVB-like 1; hexameric 97.2 0.00037 1.3E-08 70.8 6.9 98 262-379 296-408 (456)
222 3ozx_A RNAse L inhibitor; ATP 97.2 0.00075 2.5E-08 70.1 9.3 53 251-318 146-198 (538)
223 2cdn_A Adenylate kinase; phosp 97.2 0.0002 6.9E-09 64.0 4.4 33 201-233 19-51 (201)
224 2ze6_A Isopentenyl transferase 97.2 0.00016 5.4E-09 67.7 3.7 33 204-236 3-35 (253)
225 2i3b_A HCR-ntpase, human cance 97.2 0.00025 8.4E-09 63.5 4.8 23 204-226 3-25 (189)
226 3kl4_A SRP54, signal recogniti 97.2 0.0011 3.9E-08 66.7 10.2 73 201-273 96-191 (433)
227 1aky_A Adenylate kinase; ATP:A 97.2 0.00019 6.6E-09 65.2 4.2 33 201-233 3-35 (220)
228 3t61_A Gluconokinase; PSI-biol 97.2 0.00021 7.3E-09 63.9 4.4 31 202-232 18-48 (202)
229 2c95_A Adenylate kinase 1; tra 97.2 0.00017 5.8E-09 63.8 3.6 33 201-233 8-40 (196)
230 1tev_A UMP-CMP kinase; ploop, 97.2 0.00017 5.7E-09 63.6 3.5 31 202-232 3-33 (196)
231 2r8r_A Sensor protein; KDPD, P 97.2 0.00057 2E-08 62.7 6.9 32 204-235 8-42 (228)
232 3bk7_A ABC transporter ATP-bin 97.2 0.00074 2.5E-08 71.1 8.7 54 251-318 236-289 (607)
233 1e6c_A Shikimate kinase; phosp 97.2 0.00021 7.2E-09 61.9 3.8 30 203-232 3-32 (173)
234 4eun_A Thermoresistant glucoki 97.2 0.00023 7.8E-09 63.8 4.2 37 200-238 27-63 (200)
235 2vli_A Antibiotic resistance p 97.2 0.00015 5.1E-09 63.5 2.8 30 202-231 5-34 (183)
236 3umf_A Adenylate kinase; rossm 97.2 0.00019 6.5E-09 65.7 3.6 39 199-239 26-64 (217)
237 1zd8_A GTP:AMP phosphotransfer 97.2 0.0002 6.8E-09 65.5 3.7 34 200-233 5-38 (227)
238 3lw7_A Adenylate kinase relate 97.2 0.00022 7.4E-09 61.4 3.7 29 204-233 3-31 (179)
239 1ly1_A Polynucleotide kinase; 97.2 0.00015 5E-09 63.2 2.6 28 203-230 3-31 (181)
240 3g5u_A MCG1178, multidrug resi 97.2 0.00051 1.8E-08 78.5 7.6 31 196-226 410-440 (1284)
241 4aby_A DNA repair protein RECN 97.2 0.00078 2.7E-08 67.2 8.1 50 254-318 306-357 (415)
242 1knq_A Gluconate kinase; ALFA/ 97.1 0.00023 7.8E-09 62.0 3.6 35 202-238 8-42 (175)
243 2bwj_A Adenylate kinase 5; pho 97.1 0.00018 6E-09 63.9 2.8 31 202-232 12-42 (199)
244 1kht_A Adenylate kinase; phosp 97.1 0.00021 7.3E-09 62.8 3.3 26 202-227 3-28 (192)
245 3e1s_A Exodeoxyribonuclease V, 97.1 0.00073 2.5E-08 70.7 7.9 47 172-234 190-239 (574)
246 1qf9_A UMP/CMP kinase, protein 97.1 0.00025 8.6E-09 62.3 3.7 32 202-233 6-37 (194)
247 2pez_A Bifunctional 3'-phospho 97.1 0.00028 9.7E-09 61.8 4.0 38 201-238 4-44 (179)
248 3g5u_A MCG1178, multidrug resi 97.1 0.00086 2.9E-08 76.6 8.8 56 250-320 1178-1233(1284)
249 3tlx_A Adenylate kinase 2; str 97.1 0.0002 7E-09 66.4 2.9 34 200-233 27-60 (243)
250 3dl0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 63.5 3.9 30 204-233 2-31 (216)
251 3uie_A Adenylyl-sulfate kinase 97.1 0.00032 1.1E-08 62.8 4.0 39 200-238 23-64 (200)
252 2bbs_A Cystic fibrosis transme 97.1 0.001 3.5E-08 63.5 7.7 30 197-226 59-88 (290)
253 1ak2_A Adenylate kinase isoenz 97.1 0.00035 1.2E-08 64.1 4.3 32 202-233 16-47 (233)
254 1ukz_A Uridylate kinase; trans 97.1 0.00023 7.9E-09 63.6 2.9 32 202-233 15-46 (203)
255 3fb4_A Adenylate kinase; psych 97.1 0.00032 1.1E-08 63.3 3.9 30 204-233 2-31 (216)
256 3bk7_A ABC transporter ATP-bin 97.1 0.002 6.9E-08 67.8 10.5 107 199-318 379-533 (607)
257 3be4_A Adenylate kinase; malar 97.1 0.00027 9.1E-09 64.2 3.3 31 203-233 6-36 (217)
258 2pt5_A Shikimate kinase, SK; a 97.1 0.00035 1.2E-08 60.2 3.9 29 204-232 2-30 (168)
259 1zak_A Adenylate kinase; ATP:A 97.0 0.00027 9.3E-09 64.3 3.2 31 201-231 4-34 (222)
260 1q57_A DNA primase/helicase; d 97.0 0.0013 4.3E-08 67.6 8.7 38 198-235 238-279 (503)
261 3j16_B RLI1P; ribosome recycli 97.0 0.0022 7.4E-08 67.5 10.3 56 250-318 474-529 (608)
262 3ux8_A Excinuclease ABC, A sub 97.0 0.00099 3.4E-08 71.0 7.9 54 251-318 551-607 (670)
263 1cke_A CK, MSSA, protein (cyti 97.0 0.00043 1.5E-08 62.8 4.3 30 203-232 6-35 (227)
264 2v54_A DTMP kinase, thymidylat 97.0 0.00046 1.6E-08 61.5 4.3 34 201-234 3-37 (204)
265 1vt4_I APAF-1 related killer D 97.0 0.0034 1.1E-07 69.5 11.6 43 170-224 130-172 (1221)
266 2bbw_A Adenylate kinase 4, AK4 97.0 0.00041 1.4E-08 64.2 4.0 31 201-231 26-56 (246)
267 3sr0_A Adenylate kinase; phosp 97.0 0.00041 1.4E-08 62.9 3.8 33 205-239 3-35 (206)
268 2iw3_A Elongation factor 3A; a 97.0 0.0013 4.5E-08 72.4 8.5 104 198-318 457-606 (986)
269 1yqt_A RNAse L inhibitor; ATP- 97.0 0.0024 8.1E-08 66.3 9.9 106 200-318 310-463 (538)
270 2xau_A PRE-mRNA-splicing facto 97.0 0.0017 5.7E-08 70.4 9.0 65 161-225 68-132 (773)
271 2fz4_A DNA repair protein RAD2 97.0 0.0016 5.4E-08 60.1 7.6 38 204-241 110-148 (237)
272 3nwj_A ATSK2; P loop, shikimat 96.9 0.00034 1.2E-08 65.4 3.0 32 202-233 48-79 (250)
273 2gxq_A Heat resistant RNA depe 96.9 0.0046 1.6E-07 54.8 10.1 19 202-220 38-56 (207)
274 3bgw_A DNAB-like replicative h 96.9 0.0018 6.1E-08 65.6 8.1 38 198-235 193-233 (444)
275 1nks_A Adenylate kinase; therm 96.9 0.00046 1.6E-08 60.6 3.2 34 204-237 3-39 (194)
276 2pbr_A DTMP kinase, thymidylat 96.9 0.00066 2.2E-08 59.7 4.2 31 204-234 2-35 (195)
277 3crm_A TRNA delta(2)-isopenten 96.9 0.00046 1.6E-08 66.9 3.4 34 203-236 6-39 (323)
278 2jaq_A Deoxyguanosine kinase; 96.9 0.00054 1.8E-08 60.8 3.6 29 204-232 2-30 (205)
279 4a1f_A DNAB helicase, replicat 96.9 0.0021 7.2E-08 62.6 7.8 38 198-235 42-82 (338)
280 1e4v_A Adenylate kinase; trans 96.8 0.00057 1.9E-08 61.8 3.5 30 204-233 2-31 (214)
281 1wb9_A DNA mismatch repair pro 96.8 0.0031 1E-07 68.4 9.7 25 201-225 606-630 (800)
282 1m7g_A Adenylylsulfate kinase; 96.8 0.0016 5.5E-08 58.6 6.4 39 200-238 23-65 (211)
283 3r20_A Cytidylate kinase; stru 96.8 0.00075 2.6E-08 62.3 4.0 31 202-232 9-39 (233)
284 2if2_A Dephospho-COA kinase; a 96.8 0.00048 1.6E-08 61.5 2.6 29 204-233 3-31 (204)
285 2xb4_A Adenylate kinase; ATP-b 96.8 0.00073 2.5E-08 61.6 3.8 29 204-232 2-30 (223)
286 2z0h_A DTMP kinase, thymidylat 96.8 0.00091 3.1E-08 59.0 4.2 30 205-234 3-35 (197)
287 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00052 1.8E-08 67.3 2.7 29 204-232 26-54 (359)
288 2wwf_A Thymidilate kinase, put 96.8 0.00031 1E-08 63.0 1.0 29 201-229 9-37 (212)
289 2qor_A Guanylate kinase; phosp 96.8 0.00081 2.8E-08 60.3 3.8 30 198-227 8-37 (204)
290 2j41_A Guanylate kinase; GMP, 96.7 0.00067 2.3E-08 60.4 3.1 28 199-226 3-30 (207)
291 1g41_A Heat shock protein HSLU 96.7 0.003 1E-07 63.7 8.2 97 247-349 238-346 (444)
292 3b6e_A Interferon-induced heli 96.7 0.0089 3E-07 53.1 10.6 23 203-225 49-71 (216)
293 1jjv_A Dephospho-COA kinase; P 96.7 0.00074 2.5E-08 60.4 3.3 27 204-231 4-30 (206)
294 2o8b_B DNA mismatch repair pro 96.7 0.0063 2.2E-07 67.7 11.3 104 202-318 789-913 (1022)
295 1w4r_A Thymidine kinase; type 96.7 0.002 6.7E-08 57.8 5.9 33 202-234 20-55 (195)
296 1p9r_A General secretion pathw 96.7 0.0027 9.4E-08 63.7 7.7 93 164-270 143-245 (418)
297 1kgd_A CASK, peripheral plasma 96.7 0.00083 2.8E-08 59.1 3.5 27 201-227 4-30 (180)
298 3ux8_A Excinuclease ABC, A sub 96.7 0.0035 1.2E-07 66.8 8.9 54 251-318 210-265 (670)
299 1nn5_A Similar to deoxythymidy 96.7 0.00038 1.3E-08 62.5 1.2 28 200-227 7-34 (215)
300 3ake_A Cytidylate kinase; CMP 96.7 0.00089 3E-08 59.7 3.6 30 204-233 4-33 (208)
301 3tr0_A Guanylate kinase, GMP k 96.7 0.00081 2.8E-08 59.9 3.3 29 199-227 4-32 (205)
302 2plr_A DTMP kinase, probable t 96.7 0.00072 2.5E-08 60.4 3.0 28 202-229 4-31 (213)
303 2yhs_A FTSY, cell division pro 96.7 0.0099 3.4E-07 60.7 11.6 28 199-226 290-317 (503)
304 4e22_A Cytidylate kinase; P-lo 96.7 0.0011 3.6E-08 61.8 4.1 31 201-231 26-56 (252)
305 1t6n_A Probable ATP-dependent 96.7 0.031 1.1E-06 50.0 13.7 59 165-224 14-73 (220)
306 1uf9_A TT1252 protein; P-loop, 96.7 0.00088 3E-08 59.4 3.2 34 202-238 8-41 (203)
307 3a8t_A Adenylate isopentenyltr 96.6 0.0008 2.7E-08 65.5 2.9 36 202-237 40-75 (339)
308 2grj_A Dephospho-COA kinase; T 96.6 0.0011 3.6E-08 59.4 3.6 29 204-232 14-42 (192)
309 1qde_A EIF4A, translation init 96.6 0.013 4.5E-07 52.7 10.8 54 163-219 12-68 (224)
310 1vht_A Dephospho-COA kinase; s 96.6 0.0011 3.9E-08 59.8 3.5 30 202-232 4-33 (218)
311 3tau_A Guanylate kinase, GMP k 96.6 0.0013 4.6E-08 59.2 3.9 27 201-227 7-33 (208)
312 3foz_A TRNA delta(2)-isopenten 96.6 0.0011 3.6E-08 63.8 3.4 34 202-235 10-43 (316)
313 1xx6_A Thymidine kinase; NESG, 96.6 0.0041 1.4E-07 55.5 7.1 70 202-273 8-93 (191)
314 2qt1_A Nicotinamide riboside k 96.6 0.00072 2.5E-08 60.6 2.1 32 200-231 19-51 (207)
315 2yvu_A Probable adenylyl-sulfa 96.6 0.0017 5.7E-08 57.1 4.4 38 200-237 11-51 (186)
316 1z6g_A Guanylate kinase; struc 96.5 0.0012 4.2E-08 60.0 3.3 30 197-226 18-47 (218)
317 1lvg_A Guanylate kinase, GMP k 96.5 0.0012 3.9E-08 59.2 3.1 28 200-227 2-29 (198)
318 1uj2_A Uridine-cytidine kinase 96.5 0.0017 5.9E-08 60.3 4.4 39 201-239 21-67 (252)
319 2h92_A Cytidylate kinase; ross 96.5 0.0017 5.8E-08 58.6 4.1 31 202-232 3-33 (219)
320 1q3t_A Cytidylate kinase; nucl 96.5 0.0017 5.6E-08 59.7 4.0 33 200-232 14-46 (236)
321 3c8u_A Fructokinase; YP_612366 96.5 0.0014 4.7E-08 59.0 3.4 28 200-227 20-47 (208)
322 1htw_A HI0065; nucleotide-bind 96.5 0.0014 4.7E-08 56.8 3.1 30 197-226 28-57 (158)
323 1vec_A ATP-dependent RNA helic 96.5 0.015 5.2E-07 51.4 10.2 19 202-220 40-58 (206)
324 2bdt_A BH3686; alpha-beta prot 96.5 0.0017 5.9E-08 57.1 3.8 34 204-238 4-37 (189)
325 2oap_1 GSPE-2, type II secreti 96.4 0.00094 3.2E-08 68.9 2.3 71 201-271 259-343 (511)
326 3llm_A ATP-dependent RNA helic 96.4 0.01 3.5E-07 54.2 9.0 22 202-223 76-97 (235)
327 1hv8_A Putative ATP-dependent 96.4 0.014 4.7E-07 56.2 10.2 60 165-224 6-66 (367)
328 3zvl_A Bifunctional polynucleo 96.4 0.0025 8.6E-08 63.9 5.0 31 201-231 257-287 (416)
329 2iw3_A Elongation factor 3A; a 96.4 0.0071 2.4E-07 66.7 8.9 30 197-226 694-723 (986)
330 1ex7_A Guanylate kinase; subst 96.4 0.0023 7.8E-08 57.0 4.2 26 203-228 2-27 (186)
331 3exa_A TRNA delta(2)-isopenten 96.4 0.0016 5.5E-08 62.7 3.4 34 203-236 4-37 (322)
332 2px0_A Flagellar biosynthesis 96.4 0.0065 2.2E-07 58.0 7.7 36 201-236 104-143 (296)
333 1rz3_A Hypothetical protein rb 96.4 0.0049 1.7E-07 55.0 6.4 36 200-235 20-58 (201)
334 2pl3_A Probable ATP-dependent 96.4 0.0085 2.9E-07 54.5 8.1 54 164-220 24-80 (236)
335 3a00_A Guanylate kinase, GMP k 96.4 0.0018 6.3E-08 57.1 3.3 25 203-227 2-26 (186)
336 4b3f_X DNA-binding protein smu 96.3 0.013 4.5E-07 62.0 10.4 55 166-235 184-241 (646)
337 1zu4_A FTSY; GTPase, signal re 96.3 0.0062 2.1E-07 58.9 7.1 37 199-235 102-141 (320)
338 3ney_A 55 kDa erythrocyte memb 96.3 0.003 1E-07 56.8 4.3 28 200-227 17-44 (197)
339 3asz_A Uridine kinase; cytidin 96.3 0.0015 5.1E-08 58.6 2.4 27 201-227 5-31 (211)
340 3qkt_A DNA double-strand break 96.3 0.017 5.8E-07 56.0 10.1 58 259-337 270-327 (339)
341 2v9p_A Replication protein E1; 96.3 0.0021 7.2E-08 61.8 3.5 34 196-229 120-153 (305)
342 1znw_A Guanylate kinase, GMP k 96.3 0.002 6.8E-08 57.9 3.1 29 199-227 17-45 (207)
343 1ltq_A Polynucleotide kinase; 96.3 0.0018 6.1E-08 61.5 2.8 29 203-231 3-32 (301)
344 1ls1_A Signal recognition part 96.2 0.031 1.1E-06 53.2 11.5 70 201-270 97-189 (295)
345 3d3q_A TRNA delta(2)-isopenten 96.2 0.0021 7.2E-08 62.6 3.2 33 203-235 8-40 (340)
346 2jeo_A Uridine-cytidine kinase 96.2 0.002 6.8E-08 59.5 2.9 31 199-229 22-52 (245)
347 2va8_A SSO2462, SKI2-type heli 96.2 0.014 4.7E-07 62.4 9.7 59 164-222 7-66 (715)
348 3b9q_A Chloroplast SRP recepto 96.2 0.0027 9.3E-08 60.9 3.7 29 198-226 96-124 (302)
349 2f6r_A COA synthase, bifunctio 96.2 0.0025 8.4E-08 60.4 3.2 30 202-232 75-104 (281)
350 3bor_A Human initiation factor 96.1 0.019 6.4E-07 52.4 9.1 55 163-220 28-85 (237)
351 1q0u_A Bstdead; DEAD protein, 96.1 0.014 4.8E-07 52.5 8.1 54 165-221 4-60 (219)
352 1s96_A Guanylate kinase, GMP k 96.1 0.0027 9.3E-08 58.0 3.3 30 198-227 12-41 (219)
353 3e70_C DPA, signal recognition 96.1 0.0073 2.5E-07 58.6 6.4 27 200-226 127-153 (328)
354 2gza_A Type IV secretion syste 96.1 0.0036 1.2E-07 61.5 4.2 74 198-271 171-262 (361)
355 3eph_A TRNA isopentenyltransfe 96.1 0.0024 8.1E-08 63.6 2.8 34 202-235 2-35 (409)
356 1x6v_B Bifunctional 3'-phospho 96.1 0.008 2.7E-07 63.3 6.9 38 201-238 51-91 (630)
357 2qmh_A HPR kinase/phosphorylas 96.0 0.002 6.9E-08 57.9 1.9 32 202-234 34-65 (205)
358 3lnc_A Guanylate kinase, GMP k 96.0 0.0016 5.5E-08 59.5 1.3 29 198-226 23-52 (231)
359 3iuy_A Probable ATP-dependent 96.0 0.011 3.6E-07 53.6 6.7 56 162-220 16-75 (228)
360 2og2_A Putative signal recogni 96.0 0.0035 1.2E-07 61.6 3.5 29 198-226 153-181 (359)
361 2oxc_A Probable ATP-dependent 96.0 0.024 8.1E-07 51.4 8.9 54 163-219 22-78 (230)
362 1j8m_F SRP54, signal recogniti 96.0 0.012 4.2E-07 56.1 7.2 71 202-272 98-191 (297)
363 3ber_A Probable ATP-dependent 96.0 0.0087 3E-07 55.3 6.0 55 163-220 41-98 (249)
364 2axn_A 6-phosphofructo-2-kinas 96.0 0.012 4.1E-07 60.8 7.5 37 202-238 35-74 (520)
365 1s2m_A Putative ATP-dependent 96.0 0.035 1.2E-06 54.2 10.7 59 162-223 18-79 (400)
366 3fdi_A Uncharacterized protein 96.0 0.0039 1.3E-07 56.0 3.4 28 204-231 8-35 (201)
367 1ewq_A DNA mismatch repair pro 95.9 0.017 5.9E-07 62.2 8.8 24 202-225 576-599 (765)
368 2j37_W Signal recognition part 95.9 0.011 3.9E-07 60.6 6.9 35 201-235 100-137 (504)
369 3ice_A Transcription terminati 95.9 0.049 1.7E-06 53.9 11.0 117 199-317 171-325 (422)
370 2v3c_C SRP54, signal recogniti 95.8 0.015 5.2E-07 58.5 7.1 36 201-236 98-136 (432)
371 2j9r_A Thymidine kinase; TK1, 95.7 0.021 7.3E-07 51.8 7.3 31 204-234 30-63 (214)
372 2orv_A Thymidine kinase; TP4A 95.7 0.047 1.6E-06 50.1 9.5 92 202-316 19-125 (234)
373 2xxa_A Signal recognition part 95.7 0.02 6.9E-07 57.6 7.8 71 201-271 99-193 (433)
374 1odf_A YGR205W, hypothetical 3 95.7 0.003 1E-07 60.2 1.5 28 200-227 29-56 (290)
375 2zj8_A DNA helicase, putative 95.6 0.029 9.8E-07 60.1 9.2 55 166-220 2-57 (720)
376 3gmt_A Adenylate kinase; ssgci 95.6 0.0066 2.3E-07 55.8 3.6 29 204-232 10-38 (230)
377 1xti_A Probable ATP-dependent 95.6 0.19 6.5E-06 48.6 14.5 56 166-224 9-67 (391)
378 4eaq_A DTMP kinase, thymidylat 95.6 0.0059 2E-07 56.0 3.3 27 201-227 25-51 (229)
379 2ffh_A Protein (FFH); SRP54, s 95.6 0.15 5.1E-06 51.1 13.6 71 201-271 97-190 (425)
380 1gtv_A TMK, thymidylate kinase 95.6 0.0026 8.7E-08 57.0 0.6 24 204-227 2-25 (214)
381 1c9k_A COBU, adenosylcobinamid 95.5 0.007 2.4E-07 53.5 3.3 32 205-237 2-33 (180)
382 3pih_A Uvrabc system protein A 95.5 0.027 9.2E-07 61.8 8.6 55 262-337 827-881 (916)
383 2qm8_A GTPase/ATPase; G protei 95.5 0.021 7.3E-07 55.4 7.0 28 199-226 52-79 (337)
384 3fe2_A Probable ATP-dependent 95.5 0.039 1.3E-06 50.4 8.4 55 163-220 27-84 (242)
385 3ly5_A ATP-dependent RNA helic 95.5 0.044 1.5E-06 50.9 8.7 19 203-221 92-110 (262)
386 3aez_A Pantothenate kinase; tr 95.5 0.0066 2.2E-07 58.5 3.0 28 199-226 87-114 (312)
387 3tbk_A RIG-I helicase domain; 95.4 0.17 6E-06 51.3 13.9 23 203-225 20-42 (555)
388 2j0s_A ATP-dependent RNA helic 95.3 0.081 2.8E-06 51.9 10.7 59 164-223 36-95 (410)
389 1fuu_A Yeast initiation factor 95.3 0.049 1.7E-06 52.9 9.0 55 163-220 19-76 (394)
390 3pey_A ATP-dependent RNA helic 95.3 0.11 3.6E-06 50.4 11.4 58 165-222 5-64 (395)
391 3cr8_A Sulfate adenylyltranfer 95.3 0.016 5.5E-07 60.2 5.6 40 200-239 367-410 (552)
392 1a7j_A Phosphoribulokinase; tr 95.3 0.0064 2.2E-07 57.9 2.3 36 203-238 6-44 (290)
393 3hdt_A Putative kinase; struct 95.3 0.0091 3.1E-07 54.6 3.2 30 203-232 15-44 (223)
394 3szr_A Interferon-induced GTP- 95.3 0.022 7.5E-07 59.9 6.5 22 205-226 48-69 (608)
395 1rj9_A FTSY, signal recognitio 95.2 0.0092 3.1E-07 57.2 3.2 26 201-226 101-126 (304)
396 1sky_E F1-ATPase, F1-ATP synth 95.2 0.012 4.1E-07 59.7 4.1 25 202-226 151-175 (473)
397 1sq5_A Pantothenate kinase; P- 95.2 0.0078 2.7E-07 57.7 2.6 28 200-227 78-105 (308)
398 2i4i_A ATP-dependent RNA helic 95.2 0.068 2.3E-06 52.4 9.5 53 164-219 14-69 (417)
399 3dkp_A Probable ATP-dependent 95.2 0.097 3.3E-06 47.6 9.9 18 202-219 66-83 (245)
400 2p6r_A Afuhel308 helicase; pro 95.1 0.02 6.8E-07 61.1 5.9 21 201-221 39-59 (702)
401 3lxw_A GTPase IMAP family memb 95.1 0.045 1.5E-06 50.4 7.5 24 202-225 21-44 (247)
402 2vf7_A UVRA2, excinuclease ABC 95.1 0.014 4.8E-07 63.5 4.5 55 262-337 752-806 (842)
403 1np6_A Molybdopterin-guanine d 95.1 0.012 3.9E-07 51.8 3.2 25 202-226 6-30 (174)
404 3b85_A Phosphate starvation-in 95.0 0.0063 2.2E-07 55.0 1.4 25 201-225 21-45 (208)
405 3tqc_A Pantothenate kinase; bi 95.0 0.011 3.6E-07 57.3 3.0 27 201-227 91-117 (321)
406 3vkw_A Replicase large subunit 95.0 0.03 1E-06 56.3 6.4 25 201-225 160-184 (446)
407 3fmo_B ATP-dependent RNA helic 95.0 0.055 1.9E-06 51.4 8.0 53 164-219 91-148 (300)
408 3eiq_A Eukaryotic initiation f 95.0 0.068 2.3E-06 52.3 8.9 54 165-221 40-96 (414)
409 2z0m_A 337AA long hypothetical 95.0 0.058 2E-06 51.0 8.1 34 202-235 31-64 (337)
410 1lw7_A Transcriptional regulat 95.0 0.01 3.5E-07 58.2 2.8 28 202-229 170-197 (365)
411 3p32_A Probable GTPase RV1496/ 95.0 0.05 1.7E-06 53.1 7.7 25 202-226 79-103 (355)
412 3kta_A Chromosome segregation 94.9 0.013 4.4E-07 51.0 3.0 24 204-227 28-51 (182)
413 3q72_A GTP-binding protein RAD 94.9 0.018 6.3E-07 48.5 3.9 21 204-224 4-24 (166)
414 1m8p_A Sulfate adenylyltransfe 94.9 0.012 4.2E-07 61.3 3.3 36 202-237 396-435 (573)
415 3fht_A ATP-dependent RNA helic 94.9 0.11 3.8E-06 50.6 10.0 57 164-220 24-82 (412)
416 2ygr_A Uvrabc system protein A 94.8 0.064 2.2E-06 59.0 8.8 43 262-318 885-927 (993)
417 3fmp_B ATP-dependent RNA helic 94.8 0.17 5.8E-06 51.0 11.5 53 164-219 91-148 (479)
418 1wp9_A ATP-dependent RNA helic 94.8 0.16 5.4E-06 50.2 11.2 36 204-239 25-65 (494)
419 2fwr_A DNA repair protein RAD2 94.8 0.054 1.8E-06 54.5 7.7 37 204-240 110-147 (472)
420 2r6f_A Excinuclease ABC subuni 94.8 0.049 1.7E-06 59.8 7.6 54 262-336 867-920 (972)
421 3tqf_A HPR(Ser) kinase; transf 94.8 0.011 3.7E-07 51.9 2.1 24 202-225 16-39 (181)
422 2ged_A SR-beta, signal recogni 94.8 0.03 1E-06 48.7 5.0 27 200-226 46-72 (193)
423 2ocp_A DGK, deoxyguanosine kin 94.8 0.015 5.1E-07 53.3 3.1 26 202-227 2-27 (241)
424 1p5z_B DCK, deoxycytidine kina 94.7 0.0075 2.5E-07 56.2 0.8 27 201-227 23-49 (263)
425 1bif_A 6-phosphofructo-2-kinas 94.6 0.061 2.1E-06 54.6 7.6 27 201-227 38-64 (469)
426 3l9o_A ATP-dependent RNA helic 94.6 0.082 2.8E-06 59.4 9.3 33 202-234 199-234 (1108)
427 3ihw_A Centg3; RAS, centaurin, 94.6 0.041 1.4E-06 47.9 5.5 22 204-225 22-43 (184)
428 2npi_A Protein CLP1; CLP1-PCF1 94.6 0.013 4.5E-07 59.5 2.5 31 196-226 132-162 (460)
429 3pqc_A Probable GTP-binding pr 94.6 0.081 2.8E-06 45.7 7.4 23 203-225 24-46 (195)
430 2v6i_A RNA helicase; membrane, 94.5 0.11 3.9E-06 51.9 9.3 18 202-219 2-19 (431)
431 1xjc_A MOBB protein homolog; s 94.5 0.02 6.7E-07 50.1 3.1 24 203-226 5-28 (169)
432 3e2i_A Thymidine kinase; Zn-bi 94.4 0.022 7.5E-07 51.8 3.1 30 204-233 30-62 (219)
433 2f1r_A Molybdopterin-guanine d 94.3 0.013 4.4E-07 51.3 1.5 34 204-237 4-42 (171)
434 3sop_A Neuronal-specific septi 94.3 0.016 5.6E-07 54.4 2.3 23 204-226 4-26 (270)
435 2qtf_A Protein HFLX, GTP-bindi 94.3 0.1 3.5E-06 51.1 8.1 22 204-225 181-202 (364)
436 2f9l_A RAB11B, member RAS onco 94.3 0.021 7.1E-07 50.4 2.8 22 204-225 7-28 (199)
437 3tmk_A Thymidylate kinase; pho 94.3 0.036 1.2E-06 50.4 4.4 30 201-230 4-33 (216)
438 4i1u_A Dephospho-COA kinase; s 94.3 0.027 9.3E-07 51.0 3.5 30 203-233 10-39 (210)
439 2gk6_A Regulator of nonsense t 94.2 0.035 1.2E-06 58.5 4.8 38 172-225 181-218 (624)
440 2f7s_A C25KG, RAS-related prot 94.2 0.23 7.7E-06 43.9 9.6 22 204-225 27-48 (217)
441 1g8f_A Sulfate adenylyltransfe 94.2 0.018 6.2E-07 59.1 2.5 27 202-228 395-421 (511)
442 2dpy_A FLII, flagellum-specifi 94.2 0.034 1.2E-06 56.1 4.4 31 199-229 154-184 (438)
443 1oix_A RAS-related protein RAB 94.1 0.02 7E-07 50.2 2.5 23 204-226 31-53 (191)
444 4a2p_A RIG-I, retinoic acid in 94.1 0.44 1.5E-05 48.4 12.9 23 203-225 23-45 (556)
445 2p67_A LAO/AO transport system 94.1 0.088 3E-06 51.0 7.1 27 200-226 54-80 (341)
446 3h1t_A Type I site-specific re 94.0 0.099 3.4E-06 54.4 7.9 24 202-225 198-221 (590)
447 2db3_A ATP-dependent RNA helic 94.0 0.36 1.2E-05 48.1 11.7 53 163-218 54-109 (434)
448 1fzq_A ADP-ribosylation factor 93.9 0.074 2.5E-06 46.0 5.7 24 202-225 16-39 (181)
449 2vp4_A Deoxynucleoside kinase; 93.9 0.025 8.7E-07 51.5 2.8 31 200-231 18-48 (230)
450 2obl_A ESCN; ATPase, hydrolase 93.9 0.032 1.1E-06 54.4 3.6 30 200-229 69-98 (347)
451 2qag_B Septin-6, protein NEDD5 93.9 0.022 7.4E-07 57.2 2.4 28 198-225 36-65 (427)
452 3v9p_A DTMP kinase, thymidylat 93.9 0.024 8.1E-07 52.0 2.4 26 201-226 24-49 (227)
453 1wrb_A DJVLGB; RNA helicase, D 93.9 0.18 6.1E-06 46.1 8.5 18 203-220 61-78 (253)
454 1nrj_B SR-beta, signal recogni 93.9 0.032 1.1E-06 49.7 3.3 25 202-226 12-36 (218)
455 1nij_A Hypothetical protein YJ 93.9 0.039 1.3E-06 53.0 4.0 23 204-226 6-28 (318)
456 4edh_A DTMP kinase, thymidylat 93.9 0.026 9E-07 51.1 2.7 25 202-226 6-30 (213)
457 2wsm_A Hydrogenase expression/ 93.8 0.029 9.9E-07 50.2 2.9 45 170-227 11-55 (221)
458 2e87_A Hypothetical protein PH 93.8 0.18 6.1E-06 49.1 8.8 25 201-225 166-190 (357)
459 1f2t_A RAD50 ABC-ATPase; DNA d 93.8 0.03 1E-06 47.6 2.7 23 204-226 25-47 (149)
460 1zj6_A ADP-ribosylation factor 93.8 0.07 2.4E-06 46.2 5.2 24 201-224 15-38 (187)
461 2dyk_A GTP-binding protein; GT 93.7 0.032 1.1E-06 46.6 2.8 22 204-225 3-24 (161)
462 2ykg_A Probable ATP-dependent 93.7 0.45 1.5E-05 50.2 12.3 22 203-224 29-50 (696)
463 1pui_A ENGB, probable GTP-bind 93.6 0.011 3.9E-07 52.3 -0.2 29 197-225 21-49 (210)
464 1qhl_A Protein (cell division 93.6 0.017 5.8E-07 53.0 0.9 23 205-227 30-52 (227)
465 1z2a_A RAS-related protein RAB 93.6 0.034 1.2E-06 46.8 2.8 23 203-225 6-28 (168)
466 3lv8_A DTMP kinase, thymidylat 93.6 0.033 1.1E-06 51.3 2.8 25 202-226 27-51 (236)
467 2wji_A Ferrous iron transport 93.5 0.029 9.9E-07 47.8 2.3 22 204-225 5-26 (165)
468 2zej_A Dardarin, leucine-rich 93.5 0.025 8.7E-07 49.1 1.8 21 204-224 4-24 (184)
469 1kao_A RAP2A; GTP-binding prot 93.5 0.038 1.3E-06 46.3 2.8 22 204-225 5-26 (167)
470 3o8b_A HCV NS3 protease/helica 93.4 0.34 1.2E-05 51.2 10.6 35 201-235 231-265 (666)
471 2lkc_A Translation initiation 93.4 0.044 1.5E-06 46.7 3.1 24 201-224 7-30 (178)
472 2ce2_X GTPase HRAS; signaling 93.4 0.034 1.2E-06 46.4 2.4 22 204-225 5-26 (166)
473 3iev_A GTP-binding protein ERA 93.4 0.14 4.7E-06 48.9 6.9 22 204-225 12-33 (308)
474 3i5x_A ATP-dependent RNA helic 93.3 0.52 1.8E-05 48.4 11.8 19 201-219 110-128 (563)
475 1ek0_A Protein (GTP-binding pr 93.3 0.04 1.4E-06 46.3 2.8 22 204-225 5-26 (170)
476 1u8z_A RAS-related protein RAL 93.3 0.041 1.4E-06 46.1 2.8 23 203-225 5-27 (168)
477 3euj_A Chromosome partition pr 93.3 0.035 1.2E-06 56.6 2.7 28 198-226 26-53 (483)
478 1z0j_A RAB-22, RAS-related pro 93.3 0.042 1.4E-06 46.3 2.8 23 203-225 7-29 (170)
479 3ld9_A DTMP kinase, thymidylat 93.3 0.04 1.4E-06 50.3 2.8 28 201-228 20-47 (223)
480 2hf9_A Probable hydrogenase ni 93.3 0.059 2E-06 48.2 4.0 25 202-226 38-62 (226)
481 1upt_A ARL1, ADP-ribosylation 93.2 0.043 1.5E-06 46.4 2.8 25 201-225 6-30 (171)
482 2wjy_A Regulator of nonsense t 93.2 0.064 2.2E-06 58.2 4.8 38 172-225 357-394 (800)
483 2nzj_A GTP-binding protein REM 93.2 0.036 1.2E-06 47.0 2.3 23 203-225 5-27 (175)
484 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.044 1.5E-06 46.6 2.8 22 204-225 9-30 (177)
485 1z08_A RAS-related protein RAB 93.1 0.045 1.5E-06 46.2 2.8 23 203-225 7-29 (170)
486 2wjg_A FEOB, ferrous iron tran 93.1 0.039 1.3E-06 47.7 2.5 23 203-225 8-30 (188)
487 4ag6_A VIRB4 ATPase, type IV s 93.1 0.08 2.7E-06 52.1 5.0 34 201-234 34-70 (392)
488 1ky3_A GTP-binding protein YPT 93.1 0.046 1.6E-06 46.6 2.8 23 203-225 9-31 (182)
489 3dz8_A RAS-related protein RAB 93.1 0.39 1.3E-05 41.5 9.0 23 204-226 25-47 (191)
490 2erx_A GTP-binding protein DI- 93.1 0.042 1.4E-06 46.3 2.5 22 204-225 5-26 (172)
491 3oiy_A Reverse gyrase helicase 93.1 0.19 6.6E-06 49.4 7.7 21 202-222 36-56 (414)
492 2p5s_A RAS and EF-hand domain 93.0 0.041 1.4E-06 48.3 2.5 25 201-225 27-51 (199)
493 1c1y_A RAS-related protein RAP 93.0 0.049 1.7E-06 45.7 2.8 22 204-225 5-26 (167)
494 1g16_A RAS-related protein SEC 93.0 0.043 1.5E-06 46.2 2.4 22 204-225 5-26 (170)
495 1r2q_A RAS-related protein RAB 93.0 0.049 1.7E-06 45.8 2.8 21 204-224 8-28 (170)
496 4dcu_A GTP-binding protein ENG 92.9 0.16 5.6E-06 51.1 7.1 22 204-225 25-46 (456)
497 3fho_A ATP-dependent RNA helic 92.9 0.51 1.7E-05 48.1 10.8 19 202-220 158-176 (508)
498 3def_A T7I23.11 protein; chlor 92.9 0.18 6.1E-06 46.7 6.7 24 202-225 36-59 (262)
499 1w36_D RECD, exodeoxyribonucle 92.9 0.045 1.5E-06 57.5 2.9 23 203-225 165-187 (608)
500 2hxs_A RAB-26, RAS-related pro 92.8 0.052 1.8E-06 46.2 2.8 23 203-225 7-29 (178)
No 1
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-78 Score=611.89 Aligned_cols=394 Identities=70% Similarity=1.157 Sum_probs=332.3
Q ss_pred ccCCCCCCChhhHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeee
Q 014712 11 DEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVAR 90 (420)
Q Consensus 11 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (420)
+++++.+|+|.|++++|.||.++|...|+++|..|+.+.++++.++|+|++|+|+|||++|++..+.+++.++.|++|++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (467)
T 4b4t_H 22 DDDKIVPLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGDRQRLGEEHPLQVAR 101 (467)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----------------CCSSSEE
T ss_pred ccccCCCCCHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccccchhchHHhccccchhHhh
Confidence 34668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCC------------------------------CCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccce
Q 014712 91 CTKIINPN------------------------------SEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKY 140 (420)
Q Consensus 91 ~~~~~~~~------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 140 (420)
|++++..+ .++.+++|+++++++|+|++++.+++.+|+||++|++++.++
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~ 181 (467)
T 4b4t_H 102 CTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKY 181 (467)
T ss_dssp EEECCCC--------------------------------CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSC
T ss_pred hHhHhccccccccccccccccccccccccccCccccccCCCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcc
Confidence 99998532 136789999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHH
Q 014712 141 QIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lak 220 (420)
.++.+||.++||.+..|.+++.|+++|+||||+++++++|++.|.+|+.+|+.|.++|+.+|+|+|||||||||||++|+
T Consensus 182 ~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 182 NIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred eeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc
Q 014712 221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (420)
Q Consensus 221 ala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (420)
|+|++++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|.++..|.+...+.+...++++.++|++++
T Consensus 262 AiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 262 AVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp HHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred HHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988777778889999999999999
Q ss_pred CCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc-
Q 014712 301 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP- 379 (420)
Q Consensus 301 ~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~- 379 (420)
++....+++||+|||+|+.||+|++||||||+.|+|++|+.++|.+||+.|++++++..+++++.||+.|+|||||||+
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------ccccccccChhhHHHHHHHHHhhcc
Q 014712 380 ---------FRSCFMVNPHDDYCKMLYVYRSYIN 404 (420)
Q Consensus 380 ---------~~~~~~~~~~~d~~~~~~~~~~~~~ 404 (420)
.+..+...+.+||..|++.+..-..
T Consensus 422 l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 422 VCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp HHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcc
Confidence 2334556788999999976654444
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-67 Score=525.63 Aligned_cols=361 Identities=43% Similarity=0.715 Sum_probs=333.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccc
Q 014712 33 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIA 112 (420)
Q Consensus 33 ~~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 112 (420)
+|.++|+++|.++++...++++|...++. ....++...++....++.|+.||++.+.++++ +++|+.+.++
T Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~----~~iv~~~~~~ 92 (405)
T 4b4t_J 22 YFEQKIQETELKIRSKTENVRRLEAQRNA-----LNDKVRFIKDELRLLQEPGSYVGEVIKIVSDK----KVLVKVQPEG 92 (405)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCEEEEEEEEECTTS----CEEEEESSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCceEEEEEEEecCC----eEEEEeCCCC
Confidence 57789999999999888888888654432 22445556666667789999999999999864 6999999999
Q ss_pred eEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChh
Q 014712 113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192 (420)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~ 192 (420)
+|+|++...++...++||++|++++.++.+...||...+|.+..+.+++.|+++|+||||+++++++|++++.+|+++|+
T Consensus 93 ~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe 172 (405)
T 4b4t_J 93 KYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPE 172 (405)
T ss_dssp EEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHH
T ss_pred EEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCccc
Q 014712 193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (420)
Q Consensus 193 ~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~ 272 (420)
+|.++|+.+|+|+|||||||||||++|+|+|++++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+
T Consensus 173 ~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 173 LFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp HHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSC
T ss_pred HHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
++++|.+...+++...++++.++|++|+++....+++||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.|+
T Consensus 253 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp CTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred hccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 99999887777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHHHhh
Q 014712 353 RTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVYRSY 402 (420)
Q Consensus 353 ~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~~~~ 402 (420)
+++++..++|++.||+.|+|||||||+ .+..+..++.+||..|++.+..-
T Consensus 333 ~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 333 RKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp TTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred cCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence 999999999999999999999999998 34456678889999999765443
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-63 Score=499.11 Aligned_cols=320 Identities=42% Similarity=0.730 Sum_probs=303.9
Q ss_pred HHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCccccc
Q 014712 78 QMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMM 157 (420)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~ 157 (420)
....++.|+.||++.++++++ +++|+.+.+++|+|++.+.+++..++||++|++++.++.+...||...||.++.|
T Consensus 96 ~~~~~~~p~~~g~~~~~~~~~----~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~ 171 (437)
T 4b4t_I 96 LEEIRGNPLSIGTLEEIIDDD----HAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVM 171 (437)
T ss_dssp HHHHHCSSEEEEEEEEECTTS----EEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCC
T ss_pred HHhhcCCCceeEEEEEEecCC----EEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceee
Confidence 333468999999999999874 6999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 237 (420)
.+++.|+++|+||||+++++++|++.+.+|+++|+.|..+|+.+|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 238 l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
+.++|+|++++.++.+|..|+..+||||||||+|++++.|.+...+++...++++.++|++++++....+++||+|||+|
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999998887778889999999999999999999999999999999
Q ss_pred CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------cccccccc
Q 014712 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVN 387 (420)
Q Consensus 318 ~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~ 387 (420)
+.|||||+||||||+.|+|++||.++|.+||+.|++++++..++|++.||..|+|||||||+ .+..+...
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~I 411 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQV 411 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999998 24445667
Q ss_pred ChhhHHHHHHHHHh
Q 014712 388 PHDDYCKMLYVYRS 401 (420)
Q Consensus 388 ~~~d~~~~~~~~~~ 401 (420)
+.+||..|++.+..
T Consensus 412 t~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 412 TAEDFKQAKERVMK 425 (437)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhC
Confidence 88999999966543
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-62 Score=498.17 Aligned_cols=349 Identities=41% Similarity=0.695 Sum_probs=320.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEE
Q 014712 37 SIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAKFVV 116 (420)
Q Consensus 37 ~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (420)
+.+++|.+++.++.+++.|. ++. ....+.....++.|+.||++.+.++++ +++|+.+.+++|+|
T Consensus 66 ~~~~~e~~~~~~~~~~~~l~--~~~----------~~~~~~~~~l~~~~~~vg~~~~~~~~~----~~iv~~~~g~~~~v 129 (437)
T 4b4t_L 66 EHRRYDDQLKQRRQNIRDLE--KLY----------DKTENDIKALQSIGQLIGEVMKELSEE----KYIVKASSGPRYIV 129 (437)
T ss_dssp -CHHHHHHHHHHHHHHHHHH--HHH----------HHHHHHHHHHHSCCEEEEEEEECSSSS----CEEEEETTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHH----------HHHHHHHHHhccCCceeeeheeeecCC----cEEEEECCCCEEEE
Confidence 34577888888888877776 222 222333444578999999999998764 69999999999999
Q ss_pred ecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhh
Q 014712 117 GLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVK 196 (420)
Q Consensus 117 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~ 196 (420)
++...++...+++|++|++++.++.+...||...+|.+..+.+.+.|+++|+||||+++++++|++++.+|+++|++|.+
T Consensus 130 ~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~ 209 (437)
T 4b4t_L 130 GVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQR 209 (437)
T ss_dssp CBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCC
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~ 276 (420)
+|+.+|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+++++
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~ 289 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGR 289 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCC
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCC
Q 014712 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN 356 (420)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~ 356 (420)
|.+.+...+....+++.+||++++++...++++||+|||+|+.|||||+||||||+.|+|++|+.++|.+||+.|+++++
T Consensus 290 R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~ 369 (437)
T 4b4t_L 290 RFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK 369 (437)
T ss_dssp CSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC
T ss_pred cccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC
Confidence 98877778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHHHh
Q 014712 357 CERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVYRS 401 (420)
Q Consensus 357 ~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~~~ 401 (420)
+..++|++.||+.|+|||||||+ .+..+..++.+||.+|++.+..
T Consensus 370 ~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 370 KTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp BCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999998 2334456788999999977654
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-63 Score=499.93 Aligned_cols=363 Identities=40% Similarity=0.648 Sum_probs=311.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCC--------------
Q 014712 34 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNS-------------- 99 (420)
Q Consensus 34 ~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 99 (420)
+..+.+.+|++++.++.+..++...... ....++...+.....++.|+.||++.++++.+.
T Consensus 30 l~~r~~~le~e~~~l~~e~~r~~~e~~~-----~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~ 104 (434)
T 4b4t_M 30 LQTRAKLLDNEIRIFRSELQRLSHENNV-----MLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGG 104 (434)
T ss_dssp -----------CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCSSSCCEEEECCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhh
Confidence 3344444555555555554444311100 002234445556666789999999999876431
Q ss_pred --------CCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCcccccc
Q 014712 100 --------EDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVG 171 (420)
Q Consensus 100 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 171 (420)
..+.++|+.+++..|++.+...++...++||++|+++..++.+...||...||.+..|.+++.|+++|+|||
T Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~dig 184 (434)
T 4b4t_M 105 NVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVG 184 (434)
T ss_dssp --------CCSEEEEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSC
T ss_pred hhhhhhcccCceEEEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcC
Confidence 145789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHH
Q 014712 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVR 251 (420)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~ 251 (420)
|++++++.|++.+.+|+++|+.|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|+|++++.++
T Consensus 185 Gl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir 264 (434)
T 4b4t_M 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVR 264 (434)
T ss_dssp SCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCccc
Q 014712 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLD 331 (420)
Q Consensus 252 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd 331 (420)
.+|..|+..+||||||||+|.++++|.+...+++...++++.++|++++++....+|+||+|||+|+.||||++||||||
T Consensus 265 ~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD 344 (434)
T 4b4t_M 265 DAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLD 344 (434)
T ss_dssp HHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEE
T ss_pred HHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCcee
Confidence 99999999999999999999999999887777888999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccc----------cccccccChhhHHHHHHHHHh
Q 014712 332 RKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPF----------RSCFMVNPHDDYCKMLYVYRS 401 (420)
Q Consensus 332 ~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~----------~~~~~~~~~~d~~~~~~~~~~ 401 (420)
+.|+|++|+.++|.+||+.|++++++..++|++.||+.|+|||||||+. +..+...+.+||..|+..++.
T Consensus 345 ~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 345 RKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSS
T ss_pred EEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999992 333455778899988866543
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-61 Score=487.70 Aligned_cols=357 Identities=39% Similarity=0.622 Sum_probs=321.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccc
Q 014712 33 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIA 112 (420)
Q Consensus 33 ~~~~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 112 (420)
.+..++++++.++..+..+.+.+...... ....+....++.+..++.|+.||++.+.++++ +++|+.+.++
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~-----~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~----~~iv~~~~~~ 116 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRH-----LKRELKRAQEEVKRIQSVPLVIGQFLEPIDQN----TGIVSSTTGM 116 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTCSCEEEEEEEEEEETT----EEEEEETTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCceeeEEEEEccCC----eeEEecCCCC
Confidence 45567777777777776666655311111 01223344455555678999999999999864 6999999999
Q ss_pred eEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChh
Q 014712 113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192 (420)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~ 192 (420)
+|+|++...++...+++|++|++++.++.+...||...+|.+..+.+++.|+++|+||||+++++++|++.+.+|+.+|+
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~ 196 (428)
T 4b4t_K 117 SYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196 (428)
T ss_dssp EEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHH
T ss_pred EEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCccc
Q 014712 193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (420)
Q Consensus 193 ~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~ 272 (420)
.|.++|+.+|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|.
T Consensus 197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEcc-CCCHHHHHHHHHHH
Q 014712 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG-LPDLESRTQIFKIH 351 (420)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~-~Pd~~~R~~Il~~~ 351 (420)
+++.|.+...+++....+++.+||++++|+....+++||+|||+|+.|||+++||||||+.|+|| +|+.++|..||+.|
T Consensus 277 i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~ 356 (428)
T 4b4t_K 277 IATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI 356 (428)
T ss_dssp HHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH
T ss_pred hhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 99999888778888899999999999999999999999999999999999999999999999996 89999999999999
Q ss_pred HhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHH
Q 014712 352 TRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYV 398 (420)
Q Consensus 352 ~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~ 398 (420)
++++++..++|++.||..|+|||||||+ .+..+...+.+||.+|+..
T Consensus 357 ~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 357 ASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 2334556778999998854
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.3e-44 Score=386.85 Aligned_cols=229 Identities=42% Similarity=0.747 Sum_probs=182.8
Q ss_pred CcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 152 PSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
|+.......+.|+++|++|+|++++++.|++.+.+|+++|+.|.++|+.+++++|||||||||||++|+++|++++.+|+
T Consensus 461 ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 461 PSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred CcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 44444455678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEE
Q 014712 232 RVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (420)
Q Consensus 232 ~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 311 (420)
.+++++++++|+|++++.++.+|..|+..+||||||||||.+++.|+....+++....+++.+||.+|+++....+|+||
T Consensus 541 ~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp ECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred EeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999987654445556678899999999999999999999
Q ss_pred EEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccc
Q 014712 312 MATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPF 380 (420)
Q Consensus 312 ~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~ 380 (420)
+|||+|+.||++++||||||+.|+|++|+.++|.+||+.+++++++..++|++.||+.|+|||||||..
T Consensus 621 ~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~ 689 (806)
T 3cf2_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 689 (806)
T ss_dssp CC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHH
T ss_pred EeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999994
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-41 Score=366.79 Aligned_cols=217 Identities=41% Similarity=0.760 Sum_probs=205.3
Q ss_pred ccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014712 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (420)
Q Consensus 160 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 239 (420)
...|.++|+||||+++++++|++++.+|+++|++|..+|+.+|+|+|||||||||||+||+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 240 ~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
++|.|++++.++.+|..|+.++||||||||||.|+++|.+.. +....+.+.+|+..|+++..+.+|+||+|||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 999999999999999999999999999999999999886543 23345677788888998888889999999999999
Q ss_pred CCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 320 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 320 ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
||++++|||||++.|+++.|+..+|.+||+.|++++.+..++|+..||..|+||+|+||.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~ 412 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.5e-37 Score=302.61 Aligned_cols=222 Identities=42% Similarity=0.759 Sum_probs=199.8
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
+.+.|+++|++|+|++++++.|++++.+|+.+|+.|.++|+.+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
...+.|+.+..++.+|..+....|+||||||+|.+...+............+.+.+++..++++....+++||+|||+++
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999876643222111122345566777777776778899999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccc
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPF 380 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~ 380 (420)
.+|++++|+|||+..++++.|+.++|.+|++.++++.++..+++++.++..+.||+|+||+.
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHH
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999988888899999999999999999983
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=298.21 Aligned_cols=216 Identities=40% Similarity=0.695 Sum_probs=184.4
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
..|+++|+||||++++++.|++.+.+|+.+++.|..+++..++|++|+||||||||+|++++|+.++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.+.++.++.++.+|+.++...|+++|+||+|.++..+.... .....+.+.+++.++++......++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 89999999999999999888999999999999887654321 112235667888899988888889999999999999
Q ss_pred CccccCcCcccEEEEccCCCHHHHHHHHHHHHhc---CCCCCCccHHHHHhhC--CCCcccccc
Q 014712 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT---MNCERDIRFELLSRLC--PNSTGKHSP 379 (420)
Q Consensus 321 d~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~---~~~~~~v~l~~la~~t--~g~sgadl~ 379 (420)
|++++||||||+.|++++|+.++|.+||+.++++ ..+..+++++.+|..+ +|||||||.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~ 223 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLS 223 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHH
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHH
Confidence 9999999999999999999999999999999854 4456789999999975 599999998
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3e-36 Score=309.46 Aligned_cols=237 Identities=43% Similarity=0.726 Sum_probs=209.1
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 241 (420)
.+.++|+||+|++++++++++.+.. +.++..|.++|...|+++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5678999999999999999999876 778999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 242 ~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
+.|.+...++.+|..|+...||||||||+|.++.+|.....+++.+..+++.+++..++++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999988765545566777888999999999887778999999999999999
Q ss_pred ccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccc----------cccccccChhh
Q 014712 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPF----------RSCFMVNPHDD 391 (420)
Q Consensus 322 ~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~----------~~~~~~~~~~d 391 (420)
++++|||||++.+.+++|+.++|.+|++.++++.++..++++..++..++||+|+||.. +......+.+|
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~d 248 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 99999999999999999999999999999999988888899999999999999999982 11123466678
Q ss_pred HHHHHHHH
Q 014712 392 YCKMLYVY 399 (420)
Q Consensus 392 ~~~~~~~~ 399 (420)
|..++..+
T Consensus 249 l~~al~~v 256 (476)
T 2ce7_A 249 FEEAIDRV 256 (476)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.6e-36 Score=287.21 Aligned_cols=247 Identities=51% Similarity=0.886 Sum_probs=225.4
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
.+.+...|+.+|++|+|++++++.|++++..++.+++.|..+|+.++.++|||||||||||++|+++|+.++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 5 AMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred cccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
+++...+.|.....++.+|..+....|+||||||+|.+.+++.+...+++...+..+..+++.++++....+++||+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999988877666677889999999999999887888999999999
Q ss_pred CCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccc----------ccccc
Q 014712 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPF----------RSCFM 385 (420)
Q Consensus 316 ~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~----------~~~~~ 385 (420)
.++.+++++++++||+..+.++.|+.++|.+|++.+++...+..++++..++..+.|++|+||.. +..+-
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~ 244 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999988888889999999999999999882 12233
Q ss_pred ccChhhHHHHHHHHHhh
Q 014712 386 VNPHDDYCKMLYVYRSY 402 (420)
Q Consensus 386 ~~~~~d~~~~~~~~~~~ 402 (420)
..+.+|+.+++..+...
T Consensus 245 ~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 245 YVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp SBCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 46778898888665543
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=4e-35 Score=278.48 Aligned_cols=242 Identities=42% Similarity=0.695 Sum_probs=208.6
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
+|.++.++.+|++|+|++.+++.+++.+.. +.+++.|..+|...+++++|+||||||||++|+++|+.++.+++.++++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~ 79 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHH
Confidence 356778899999999999999999998876 7888899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
++...+.+.+...++.+|..+....|+++||||+|.+...+.....++.......+.+++..++++....+++||++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 80 DFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 159 (257)
T ss_dssp SSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC
Confidence 99988889999999999999999899999999999998877554444555666788889999988877888999999999
Q ss_pred CCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccccc----------ccccc
Q 014712 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPFR----------SCFMV 386 (420)
Q Consensus 317 ~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~~----------~~~~~ 386 (420)
++.++++++|+|||++.+.++.|+.++|.+|++.++++.++..++++..++..++||+++||... ...-.
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~ 239 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV 239 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999888888999999999999999999821 11234
Q ss_pred cChhhHHHHHHHH
Q 014712 387 NPHDDYCKMLYVY 399 (420)
Q Consensus 387 ~~~~d~~~~~~~~ 399 (420)
.+.+||.+++..+
T Consensus 240 i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 240 VSMVEFEKAKDKI 252 (257)
T ss_dssp BCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 5667777776554
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=288.69 Aligned_cols=215 Identities=36% Similarity=0.636 Sum_probs=194.9
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-CCcEEEEecch
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSE 237 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-~~~~i~v~~~~ 237 (420)
+.+.|+++|+||+|++++++.|++.+.+|+.+|+.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 34678999999999999999999999999999999975 46788999999999999999999999999 89999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc-CCCCeEEEEEeCC
Q 014712 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNR 316 (420)
Q Consensus 238 l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~ttn~ 316 (420)
+...+.|+.++.++.+|..++...|+||||||+|.+.+.+... ......+.+.+++..++++. ...+++||+|||+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 9999999999999999999999999999999999998877543 23445677788888888875 3578999999999
Q ss_pred CCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc
Q 014712 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 317 ~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~ 379 (420)
++.+|++++| ||+..+.+++|+.++|.+|++.++++.+.. .+.++..|++.|+||+|+||.
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~ 220 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS 220 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999 999999999999999999999999887654 567899999999999999998
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.8e-35 Score=288.29 Aligned_cols=217 Identities=37% Similarity=0.642 Sum_probs=190.9
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
.++.+.|+++|++|+|++++++.|++++.+|+.+|+.|.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 4567899999999999999999999999999999999987 567889999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc-CCCCeEEEEEeC
Q 014712 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATN 315 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~ttn 315 (420)
++...+.|+.+..++.+|..++...|+||||||||.+.+.+.+....... +...+++..++++. ...+++||+|||
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTH---HHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHH---HHHHHHHHHhccccccCCceEEEEecC
Confidence 99999999999999999999999999999999999998877544333333 44455666666653 456899999999
Q ss_pred CCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc
Q 014712 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 316 ~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~ 379 (420)
+++.||++++| ||+..+.+++|+.++|.+|++.++++.+.. .+.+++.|+..++||+|+||.
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999 999999999999999999999999887654 567899999999999999998
No 16
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=9.2e-34 Score=292.56 Aligned_cols=237 Identities=41% Similarity=0.694 Sum_probs=212.6
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 242 (420)
++++|++|+|+++++.++++++.. +.++..|..+++..|++++|+||||||||+||+++|+.++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999999876 7788899999999999999999999999999999999999999999999999989
Q ss_pred hhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCc
Q 014712 243 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP 322 (420)
Q Consensus 243 ~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 322 (420)
.+.....++.+|+.+....|+++||||||.++..+.....+...+..+++.+++.+++++.....+++|++||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99998899999999888889999999999998776543334567778899999999999888788999999999999999
Q ss_pred cccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCccccccc----------cccccccChhhH
Q 014712 323 ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSPF----------RSCFMVNPHDDY 392 (420)
Q Consensus 323 al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~~----------~~~~~~~~~~d~ 392 (420)
+++|||||++.+.|++|+.++|.+||+.++++..+..++++..+|..++||+|+||+. +......+.+||
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl 264 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 264 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Confidence 9999999999999999999999999999999888888999999999999999999981 112234667899
Q ss_pred HHHHHHHH
Q 014712 393 CKMLYVYR 400 (420)
Q Consensus 393 ~~~~~~~~ 400 (420)
..+++.+.
T Consensus 265 ~~al~~v~ 272 (499)
T 2dhr_A 265 EEAADRVM 272 (499)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 98887654
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.1e-34 Score=286.82 Aligned_cols=220 Identities=36% Similarity=0.623 Sum_probs=182.1
Q ss_pred ccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
+........|+++|++|+|++.+++.|++++.+|+.+|+.|.. +..+++++|||||||||||++|+++|++++.+|+.+
T Consensus 37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp ----------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3344566788999999999999999999999999999999987 668889999999999999999999999999999999
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC-CCCeEEEE
Q 014712 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLM 312 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~-~~~v~vI~ 312 (420)
+++++...+.|+.+..++.+|..++...|+||||||+|.+.+.+.... .....+...+++..++++.. ..+++||+
T Consensus 116 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~v~vI~ 192 (355)
T 2qp9_X 116 SSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE---SEASRRIKTELLVQMNGVGNDSQGVLVLG 192 (355)
T ss_dssp EHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEE
T ss_pred eHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc---chHHHHHHHHHHHHhhcccccCCCeEEEe
Confidence 999999999999999999999999999999999999999988764432 23344555667777776543 56899999
Q ss_pred EeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc
Q 014712 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 313 ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~ 379 (420)
+||+++.++++++| ||+..+.+++|+.++|.+||+.+++..+.. .+.+++.|++.|+||+|+||.
T Consensus 193 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~ 258 (355)
T 2qp9_X 193 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIA 258 (355)
T ss_dssp EESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHH
T ss_pred ecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999 999999999999999999999999887653 567899999999999999998
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=267.79 Aligned_cols=239 Identities=36% Similarity=0.599 Sum_probs=188.2
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 242 (420)
|+++|++|+|++++++.|++++.. +.+++.|..+|+.++.++|||||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467999999999999999999876 7888999999999999999999999999999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCC-CCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 243 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 243 ~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~-~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
.+.+...++.+|..+....|+||||||+|.+...+.....+ .+...+..+..++..++++....++++|+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 88889999999999999999999999999998766432211 23455677888998888877778899999999999999
Q ss_pred ccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCcc--HHHHHhhCCCCccccccc----------cccccccCh
Q 014712 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIR--FELLSRLCPNSTGKHSPF----------RSCFMVNPH 389 (420)
Q Consensus 322 ~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~--l~~la~~t~g~sgadl~~----------~~~~~~~~~ 389 (420)
++++++|||+..+++++|+.++|.+|++.+++..++..+.+ +..++..+.||+|++|.. +......+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999998887765433 478999999999999871 111234556
Q ss_pred hhHHHHHHHHHhh
Q 014712 390 DDYCKMLYVYRSY 402 (420)
Q Consensus 390 ~d~~~~~~~~~~~ 402 (420)
+|+..++..+..-
T Consensus 240 ~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 240 LNFEYAVERVLAG 252 (262)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC
Confidence 7888887655433
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6.4e-33 Score=286.50 Aligned_cols=216 Identities=40% Similarity=0.758 Sum_probs=197.5
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
..++++|++|+|++.+++.|++++..++.+++.|..+|..++.++|||||||||||++|+++|++++.+|+.++|+++..
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.+.|+....++.+|..|....|++|||||||.+.+++.... .....+.+..|+..+++.....+++||+|||+++.|
T Consensus 277 ~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~---~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC---CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc---chHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 99999999999999999999999999999999988764432 233345555666666666667889999999999999
Q ss_pred CccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 321 d~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
+++++++|||+..++|+.|+.++|.+||+.+++.+.+..++++..++..+.||+|+||.
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999998
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.8e-32 Score=259.69 Aligned_cols=220 Identities=44% Similarity=0.780 Sum_probs=193.3
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
....|..+|++++|+++++.++++.+.. +.++..+..+++..++|++|+||||||||+|++++|+.++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4567889999999999999999998876 567888999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
...+.+.....++.+|+.+....|+++|+||+|.++..+.....+...+..+.+.+++..+++......++++++||.|+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 88888888888999999988788999999999999876643222345666778889999999887777789999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
.+|++++|++||++.++++.|+.++|.+||+.+++...+..++++..+|..++||+|+||.
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 226 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 226 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999999999888888889999999999999999988
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=5.2e-33 Score=284.70 Aligned_cols=220 Identities=34% Similarity=0.617 Sum_probs=185.6
Q ss_pred cccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-CCcEEEE
Q 014712 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRV 233 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-~~~~i~v 233 (420)
....+...|+++|++|+|++.+++.|++++.+|+.+|+.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 344566789999999999999999999999999999999875 35678999999999999999999999999 8999999
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc-CCCCeEEEE
Q 014712 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLM 312 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~ 312 (420)
+++++...+.|..+..++.+|..++...|+||||||||.+++.+.... .....+.+.+++..++++. ...+++||+
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC---CGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc---ccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 999999999999999999999999999999999999999988765432 3334566778888888765 357899999
Q ss_pred EeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCccccccc
Q 014712 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSPF 380 (420)
Q Consensus 313 ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~~ 380 (420)
|||+++.++++++| ||+..+.+++|+.++|..||+.++++.+.. .+.+++.|+..|+||+|+||..
T Consensus 277 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 277 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp EESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999 999999999999999999999999877653 5678999999999999999983
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=5.5e-31 Score=253.15 Aligned_cols=220 Identities=44% Similarity=0.780 Sum_probs=193.4
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
+...|+.+|++++|+++++.++++.+.. +.++..+..+++..+++++|+||||||||||++++++.++..++.+++.++
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 3445889999999999999999998875 567888999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
...+.+.....++.+|+.+....|+++|+||+|.++..+.........+....+.+++.++++......++++++||.|+
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch
Confidence 88888888888899999998888999999999998766543222235667788889999999887777789999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
.+|++++|++||++.++|+.|+.++|.+||+.+++...+..++++..+|..++|++|+||+
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999999999888888889999999999999999988
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=8.6e-34 Score=309.54 Aligned_cols=222 Identities=42% Similarity=0.769 Sum_probs=198.5
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 237 (420)
.....+.++|++++|++++++.|.+++.+++.+++.|.++++.++.++||+||||||||+||+++|+.++.+|+.+++++
T Consensus 467 ~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 238 l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
+..+|+|+.+..++.+|+.++...||||||||||.++..|.......+....+.+.+|+..++++....+++||+|||++
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~ 626 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSC
T ss_pred hhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCc
Confidence 99999999999999999999999999999999999998875543333445677888999999998888899999999999
Q ss_pred CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 318 ~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
+.||++++|||||+..++|++|+.++|..||+.++++..+..++++..|++.+.||+|+||.
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~ 688 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT 688 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHH
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHH
Confidence 99999999999999999999999999999999999999888899999999999999999998
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=4.4e-31 Score=255.57 Aligned_cols=218 Identities=34% Similarity=0.582 Sum_probs=184.0
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
..++.+.++.+|++|+|++.+++.|++++..+..+|+.|..++ .++.++||+||||||||++|+++|++++.+|+.+++
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH
Confidence 3456678899999999999999999999999999999988766 567899999999999999999999999999999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC---CCCeEEEE
Q 014712 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA---RGNIKVLM 312 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~---~~~v~vI~ 312 (420)
+++...+.+.+...++.+|..+....|++|||||+|.+...+...........+.. ++..++++.. ..+++||+
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~---ll~~l~~~~~~~~~~~v~vi~ 164 (297)
T 3b9p_A 88 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTE---FLVEFDGLPGNPDGDRIVVLA 164 (297)
T ss_dssp TTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHH---HHHHHHHCC------CEEEEE
T ss_pred HHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHH---HHHHHhcccccCCCCcEEEEe
Confidence 99999999999999999999999999999999999999877654332333444444 4444444332 35799999
Q ss_pred EeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc
Q 014712 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 313 ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~ 379 (420)
+||+++.+++++++ ||+..+.+++|+.++|..|++.++++.+.. .+.++..++..+.||+|+||.
T Consensus 165 ~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 165 ATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp EESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred ecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999 999999999999999999999999876643 445688999999999999986
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=260.21 Aligned_cols=240 Identities=32% Similarity=0.535 Sum_probs=200.2
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
..+...++.+|++|+|++.+++.|++++.+|+.+++.|...+ .+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH
Confidence 345678899999999999999999999999999999887765 6788999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc--CCCCeEEEEEe
Q 014712 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKVLMAT 314 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--~~~~v~vI~tt 314 (420)
++...+.|.....++.+|..+....|+||||||||.+...+... .+....+.+.+++..+++.. ...+++||+||
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~at 228 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGAT 228 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEE
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEec
Confidence 99999999999999999999999999999999999998766332 23344566667777777654 34679999999
Q ss_pred CCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCccccccccc-----------
Q 014712 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSPFRS----------- 382 (420)
Q Consensus 315 n~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~~~~----------- 382 (420)
|.++.+++++++ ||+..+.++.|+.++|.+|++.+++..+.. .+.+++.++..++||+|+||....
T Consensus 229 n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999776543 455789999999999999998211
Q ss_pred -----------cccccChhhHHHHHHHHHhh
Q 014712 383 -----------CFMVNPHDDYCKMLYVYRSY 402 (420)
Q Consensus 383 -----------~~~~~~~~d~~~~~~~~~~~ 402 (420)
.....+..||..++..++..
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 307 QTADIATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp CC----------CCCBCHHHHHHHHHHHGGG
T ss_pred hhhhhccccccccCCcCHHHHHHHHHhcCCC
Confidence 11245667888888776653
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=5.4e-33 Score=265.11 Aligned_cols=218 Identities=41% Similarity=0.764 Sum_probs=186.5
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
+.++.+|++|+|++++++.+++++.. +.+++.|..++...+.++|||||||||||++|+++|++++.+++.++++.+..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 56778999999999999999998876 78899999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCC-CCCCHHHHHHHHHHHHHhcCCcC-CCCeEEEEEeCCCC
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPD 318 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l~~~~~-~~~v~vI~ttn~~~ 318 (420)
.+.|.+...++.+|..+....|+||||||+|.+...+.... ...+......+..++..++++.. ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 88888777788899999988999999999999987653211 01112223345567777776543 34589999999999
Q ss_pred CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 319 ~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
.++++++++|||+..+.|+.|+.++|.++++.+++.+.+..+++++.++..+.||+|+||.
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~ 223 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA 223 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHH
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999999999988888888899999999999999988
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=5e-30 Score=258.22 Aligned_cols=223 Identities=33% Similarity=0.565 Sum_probs=180.3
Q ss_pred CCcccccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcE
Q 014712 151 DPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (420)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 230 (420)
...+...++...++++|++|+|++.+++.|.+++..+..+++.|...+ .++.++|||||||||||++|+++|++++.+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~ 176 (389)
T 3vfd_A 98 ANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATF 176 (389)
T ss_dssp CTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcE
Confidence 345556678889999999999999999999999999999999988877 5578999999999999999999999999999
Q ss_pred EEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC--CCCe
Q 014712 231 IRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA--RGNI 308 (420)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~--~~~v 308 (420)
+.++++++...+.|.....++.+|..+....|+||||||||.++..+....... ..+.+..++..++++.. ..++
T Consensus 177 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 177 FNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA---SRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp EEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CT---HHHHHHHHHHHHHHHC-----CE
T ss_pred EEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchH---HHHHHHHHHHHhhcccccCCCCE
Confidence 999999999999999999999999999999999999999999987664322222 33444455555555433 4679
Q ss_pred EEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc
Q 014712 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 309 ~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~ 379 (420)
+||+|||.++.+++++++ ||+..+.|+.|+.++|.+|++.++...+.. .+.++..|+..+.||+|++|.
T Consensus 254 ~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp EEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred EEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 999999999999999999 999999999999999999999999775543 345788999999999999987
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=9.6e-29 Score=269.72 Aligned_cols=216 Identities=41% Similarity=0.759 Sum_probs=199.2
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 240 (420)
..+.++|++|+|++++++.|++++..|+.+|++|..+++.++.++||+||||||||+||+++|+.++.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.+.++....++.+|+.+....|+++||||+|.+...+... ......+.+..++..+++.....++.+|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 9999999999999999999999999999999998876432 2333455666777778887777889999999999999
Q ss_pred CccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 321 d~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
++++.+++||++.+.++.|+.++|.+|++.+++++.+..++++..++..+.||+|+|+.
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~ 412 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHH
Confidence 99999999999999999999999999999999999998889999999999999999987
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=3.4e-28 Score=235.82 Aligned_cols=177 Identities=22% Similarity=0.315 Sum_probs=137.1
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHH----HhCCCcEEEecCccc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDA 272 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a----~~~~p~Il~iDEiD~ 272 (420)
.+.++|.++|||||||||||++|+++|++++.+++.++++++...+.|..+..++.+|..| +...|+||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3678899999999999999999999999999999999999999999999999999999998 577899999999999
Q ss_pred ccCCccCCC--CCCCHHHHHHHHHHHHHhc--------CCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHH
Q 014712 273 IGGARFDDG--VGGDNEVQRTMLEIVNQLD--------GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 342 (420)
Q Consensus 273 l~~~r~~~~--~~~~~~~~~~l~~ll~~l~--------~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~ 342 (420)
+++.+.+.. ......++..++++++... ......+++||+|||+++.+|++++|+|||+..+. .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 987543211 1123345566666665221 22245679999999999999999999999999887 47999
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 343 SRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 343 ~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
+|.+|++.++.. .+++++.++.+++||+|++|.
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHH
Confidence 999999988864 356799999999999999987
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=1.7e-26 Score=237.22 Aligned_cols=203 Identities=22% Similarity=0.236 Sum_probs=142.9
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhh
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV 239 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 239 (420)
.|...|++++|++++++.+..++.. ...|..+++++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 3456789999999999999988865 234667889999999999999999999999998 999999999999
Q ss_pred hhhhhhhHHHHHHHHHHH---HhCCCcEEEecCcccccCCccCCCCCCCHHHHH-H---------------HHHHHHHhc
Q 014712 240 QKYVGEGARMVRELFQMA---RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR-T---------------MLEIVNQLD 300 (420)
Q Consensus 240 ~~~~g~~~~~v~~~f~~a---~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~-~---------------l~~ll~~l~ 300 (420)
.++.|+.+. ++.+|..| +...|+||||||+|.++++|.+...++...... . ...++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 89999999 778999999999999998886543222111111 1 112444443
Q ss_pred --CCcCCCCeEEEEEeCCCCCCCccccCcCcccE--EEEccCC--CHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCc
Q 014712 301 --GFDARGNIKVLMATNRPDTLDPALLRPGRLDR--KVEFGLP--DLESRTQIFKIHTRTMNCERDIRFELLSRLCPNST 374 (420)
Q Consensus 301 --~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~--~i~~~~P--d~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~s 374 (420)
++.....++|++|||+++.+|++++|+||||+ .+.++.| +.++|.+|++.++. .+++.++..++|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 33333445666899999999999999999999 5566666 45778888765553 268899999999
Q ss_pred cccccccc
Q 014712 375 GKHSPFRS 382 (420)
Q Consensus 375 gadl~~~~ 382 (420)
|+||....
T Consensus 253 gadl~~l~ 260 (456)
T 2c9o_A 253 GQDILSMM 260 (456)
T ss_dssp --------
T ss_pred hhHHHHHH
Confidence 99988543
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=5.1e-21 Score=185.56 Aligned_cols=188 Identities=22% Similarity=0.281 Sum_probs=148.3
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCC---CcceeeCCCCChHHHHHHHHHHhc-------CCcEEEEecchh
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPP---KGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSEL 238 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~---~~vLL~GppGtGKT~Lakala~~~-------~~~~i~v~~~~l 238 (420)
+|+|++++++.|.+++..+. .+..+...|+.++ .++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999998754 4667777776554 469999999999999999999987 348999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
...+.|.....+..+|..+ .++||||||+|.++..+.+ ...+...+..++.+++. ...++.+|++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~-----~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----NRDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH-----CTTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc-----CCCCEEEEEeCChHH
Confidence 9999998888888888876 4579999999999765432 22456677777777664 246788999998653
Q ss_pred -----CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhh
Q 014712 319 -----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRL 369 (420)
Q Consensus 319 -----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~ 369 (420)
.++|+|++ ||+..+.|++|+.+++..|++.++...+.. .+..+..++..
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~ 235 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAY 235 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHH
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35789999 999999999999999999999999876543 22234555554
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.83 E-value=1.6e-19 Score=177.34 Aligned_cols=191 Identities=12% Similarity=0.129 Sum_probs=143.4
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
..|.++..+.+|++++|.+..++.+..++..... .-.++.++||+||||||||++|+++|+.++.+|+.+++
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence 3566778888999999999999999999876321 12456789999999999999999999999999999998
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCC-------------
Q 014712 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------------- 302 (420)
Q Consensus 236 ~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------------- 302 (420)
..+.. ...+...+.. ...+++|||||||.+ ....+..++..++.....
T Consensus 89 ~~~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3pfi_A 89 PMIEK------SGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIK 149 (338)
T ss_dssp GGCCS------HHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCC
T ss_pred hhccc------hhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCcccccee
Confidence 76531 1222233322 356789999999998 467788888777653210
Q ss_pred cCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcc
Q 014712 303 DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 303 ~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sg 375 (420)
....++.+|++||....++++|++ ||+..+.|++|+.+++..+++.++...+.. .+..++.++..+.|...
T Consensus 150 ~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r 221 (338)
T 3pfi_A 150 IDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR 221 (338)
T ss_dssp CCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHH
T ss_pred cCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHH
Confidence 001248899999999999999999 999999999999999999999999876643 23346777777777553
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.82 E-value=5.1e-21 Score=194.02 Aligned_cols=168 Identities=19% Similarity=0.217 Sum_probs=85.2
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCC-CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhhh-
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID-PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE- 245 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~-~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-~~~g~- 245 (420)
+|+|++++++.|..++..+.+++..+..++.. ++.++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 59999999999999998877776666555443 5789999999999999999999999999999999999888 58885
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE-eCCCCCCCccc
Q 014712 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA-TNRPDTLDPAL 324 (420)
Q Consensus 246 ~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t-tn~~~~ld~al 324 (420)
.+..++.+|..+... +++||++.+.... ......+++.+|+..++++....++ +++ ||+++.||++|
T Consensus 96 ~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 96 VDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHSCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHH
Confidence 789999999988764 4589988875332 1223357778888899988666554 455 99999999999
Q ss_pred cCcCcccEEEEccCCCHH-HHHHHH
Q 014712 325 LRPGRLDRKVEFGLPDLE-SRTQIF 348 (420)
Q Consensus 325 ~r~gRfd~~i~~~~Pd~~-~R~~Il 348 (420)
+|+||||+.|++++|+.. .|.+||
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhh
Confidence 999999999999999987 777876
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.80 E-value=9.6e-19 Score=170.47 Aligned_cols=189 Identities=17% Similarity=0.222 Sum_probs=142.4
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
.++..+.+|++++|.+..++.+..++..... +-.++.+++|+||||||||++|+++++.++.+++.++++.+
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHH--------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHc--------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 3456777999999999999999998865211 11356789999999999999999999999999999998765
Q ss_pred hhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC-----Cc--------CC
Q 014712 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-----FD--------AR 305 (420)
Q Consensus 239 ~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~-----~~--------~~ 305 (420)
.. ...+...|.. ....+++|||||+|.+ +...+..+..+++...- .. ..
T Consensus 75 ~~------~~~l~~~l~~-~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 75 EK------PGDLAAILAN-SLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp CS------HHHHHHHHTT-TCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred CC------hHHHHHHHHH-hccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 32 1112222221 1246789999999998 46677788887776420 00 11
Q ss_pred CCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcc
Q 014712 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 306 ~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sg 375 (420)
.++.+|++||.+..+++++.+ ||+..+.+++|+.+++..+++.++...+.. .+..++.++..+.|..+
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r 205 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMR 205 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Confidence 357899999999999999998 998899999999999999999998765543 23346788888888765
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=3.4e-19 Score=158.75 Aligned_cols=164 Identities=25% Similarity=0.356 Sum_probs=124.1
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CC
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 228 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~ 228 (420)
.+..++.+|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.
T Consensus 13 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~ 79 (195)
T 1jbk_A 13 TERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGR 79 (195)
T ss_dssp HHHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTC
T ss_pred HHHHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCC
Confidence 4455667899999999999999988754 345689999999999999999999986 78
Q ss_pred cEEEEecchhh--hhhhhhhHHHHHHHHHHHH-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC
Q 014712 229 CFIRVIGSELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (420)
Q Consensus 229 ~~i~v~~~~l~--~~~~g~~~~~v~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (420)
+++.+++..+. ..+.+.....+..++..+. ...++||||||+|.+...+.. ......+..+..++. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~l~~~~~-------~ 149 (195)
T 1jbk_A 80 RVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALA-------R 149 (195)
T ss_dssp EEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------T
T ss_pred cEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHHHHHHHHHhhc-------c
Confidence 88999888776 3445666667777777654 456789999999999754321 112233445555443 4
Q ss_pred CCeEEEEEeCCCC-----CCCccccCcCcccEEEEccCCCHHHHHHHH
Q 014712 306 GNIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (420)
Q Consensus 306 ~~v~vI~ttn~~~-----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il 348 (420)
.++.+|++||.+. .+++++++ ||+ .+.++.|+.+++.+|+
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 5678899998875 78999999 997 6999999999998875
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=1e-18 Score=166.73 Aligned_cols=195 Identities=17% Similarity=0.194 Sum_probs=132.2
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhhhh
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEG 246 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-~~~g~~ 246 (420)
..++|.++.++.+....... .......+..++.++||+||||||||++|+++|+.++.+|+.+++++... ...+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45778888877776642211 11223334567789999999999999999999999999999998875322 122333
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc-CCCCeEEEEEeCCCCCCCc-cc
Q 014712 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNRPDTLDP-AL 324 (420)
Q Consensus 247 ~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~ttn~~~~ld~-al 324 (420)
...++.+|..+....+++|||||+|.+++.+..+ ........+.+..+ +++.. ...+++||+|||.++.+++ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~---~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVL---LKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHH---TTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHH---hcCccCCCCCEEEEEecCChhhcchhhh
Confidence 4567888988888889999999999997654321 11233344444443 33332 2446789999999988887 55
Q ss_pred cCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCc
Q 014712 325 LRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNST 374 (420)
Q Consensus 325 ~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~s 374 (420)
.+ ||+..+.+|+++. |.+|.....+...+ .+.++..++..+.|++
T Consensus 186 ~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 186 LN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKK 230 (272)
T ss_dssp TT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSE
T ss_pred hc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCC
Confidence 55 9999988866554 34444444433334 3446889999999874
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.78 E-value=1.1e-18 Score=173.12 Aligned_cols=209 Identities=21% Similarity=0.244 Sum_probs=139.7
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecchhhh
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQ 240 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~~ 240 (420)
|..+|++++|.+..++.+..+... ...+..++.++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~--------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM--------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH--------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 444599999999999887666544 1224455789999999999999999999999874 788888766433
Q ss_pred hhhh-------------------------------------------------hhHHHHHHHHHHHHh-----C----CC
Q 014712 241 KYVG-------------------------------------------------EGARMVRELFQMARS-----K----KA 262 (420)
Q Consensus 241 ~~~g-------------------------------------------------~~~~~v~~~f~~a~~-----~----~p 262 (420)
.+.+ .....++..+..+.. + .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 2211 113334444444322 1 26
Q ss_pred cEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEe-----------CCCCCCCccccCcCccc
Q 014712 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT-----------NRPDTLDPALLRPGRLD 331 (420)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~tt-----------n~~~~ld~al~r~gRfd 331 (420)
+||||||+|.+ +.+.+..+..+++. ....++++++. |.+..+++++++ ||.
T Consensus 191 ~vl~IDEi~~l-----------~~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHML-----------DIESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGS-----------BHHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhcccc-----------ChHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 89999999998 45566666555532 22344444443 247789999999 995
Q ss_pred EEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHH
Q 014712 332 RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYV 398 (420)
Q Consensus 332 ~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~ 398 (420)
. +.|++|+.+++.+|++.++...+.. .+..++.++..+.+.++.++. .....-..+..++.+++..
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5 8999999999999999998765443 233477888888732333333 1112335566777777654
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.78 E-value=3e-18 Score=167.47 Aligned_cols=184 Identities=21% Similarity=0.237 Sum_probs=138.8
Q ss_pred cccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEe
Q 014712 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 234 (420)
...|.+++++.+|++++|.++.++.++.++.. -..+..+|++||||||||++|+++|+.++.+++.++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 34689999999999999999999999999974 134567888899999999999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHH-Hh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeE
Q 014712 235 GSELVQKYVGEGARMVRELFQMA-RS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (420)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~~f~~a-~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (420)
++... ...++..+... .. ..+.||||||+|.+.+ .+.+..+..+++.. ..++.
T Consensus 81 ~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~-----~~~~~ 138 (324)
T 3u61_B 81 GSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY-----SSNCS 138 (324)
T ss_dssp TTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH-----GGGCE
T ss_pred ccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC-----CCCcE
Confidence 87642 22333333332 22 2578999999999831 55677888877764 35678
Q ss_pred EEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH-------hcCCCC-CC-ccHHHHHhhCCCCcc
Q 014712 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-------RTMNCE-RD-IRFELLSRLCPNSTG 375 (420)
Q Consensus 310 vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~-------~~~~~~-~~-v~l~~la~~t~g~sg 375 (420)
+|++||.+..+++++++ || ..+.|+.|+.++|.+|++.+. ...++. .+ ..++.++..+.|-..
T Consensus 139 iI~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 139 IIITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR 210 (324)
T ss_dssp EEEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT
T ss_pred EEEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH
Confidence 99999999999999999 88 579999999999876655443 222332 22 346778877766433
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.2e-17 Score=152.11 Aligned_cols=182 Identities=21% Similarity=0.234 Sum_probs=136.0
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcE
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACF 230 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~ 230 (420)
.+|.+..++.+|++++|.+..++.+.+++... .+.+++|+||||||||++|+++++.+ ...+
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~ 71 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNF 71 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGE
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccce
Confidence 35677888999999999999999999998751 23359999999999999999999875 4567
Q ss_pred EEEecchhhhhhhhhhHHHHHHHHHHHH------hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 231 IRVIGSELVQKYVGEGARMVRELFQMAR------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~~f~~a~------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
+.++++..... ..+...+.... ...+.+|+|||+|.+ ....+..+..+++..
T Consensus 72 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~----- 129 (226)
T 2chg_A 72 IEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY----- 129 (226)
T ss_dssp EEEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----
T ss_pred EEeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----
Confidence 77777654321 11222222221 256789999999998 455667777777653
Q ss_pred CCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcc
Q 014712 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 305 ~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sg 375 (420)
..++.+|++||.+..+++++.+ ||. .+.+++|+.++...+++.++...+.. .+..+..++..+.|..+
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 198 (226)
T 2chg_A 130 SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFR 198 (226)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHH
T ss_pred CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 4578899999999999999999 886 89999999999999999988655443 22346677777766443
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.76 E-value=3.7e-18 Score=169.80 Aligned_cols=179 Identities=25% Similarity=0.304 Sum_probs=125.9
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhh-cC-CCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh-hhhhh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVK-LG-IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGEG 246 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~-~g-i~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~-~~g~~ 246 (420)
|+|++.+++.+..++............ .+ ..++.++||+||||||||++|+++|+.++.+|+.++++++... |.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 799999999999988543222110000 11 1357789999999999999999999999999999999988754 77765
Q ss_pred -HHHHHHHHHHH----HhCCCcEEEecCcccccCCccCCCCCCCHH---HHHHHHHHHHHhc------C----------C
Q 014712 247 -ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNE---VQRTMLEIVNQLD------G----------F 302 (420)
Q Consensus 247 -~~~v~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~---~~~~l~~ll~~l~------~----------~ 302 (420)
...++.+|..+ ....++||||||+|.+...+.+...+.+.. ++..|+++++... + +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56677777765 334578999999999987765443333332 5666666665100 0 1
Q ss_pred cCCCCeEEEEEeCCC----------CC-----------------------------------CCccccCcCcccEEEEcc
Q 014712 303 DARGNIKVLMATNRP----------DT-----------------------------------LDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 303 ~~~~~v~vI~ttn~~----------~~-----------------------------------ld~al~r~gRfd~~i~~~ 337 (420)
-...|+.+|+++|.. .. +.|+|++ ||+.++.|.
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 123456666666642 11 6788888 999999999
Q ss_pred CCCHHHHHHHHHH
Q 014712 338 LPDLESRTQIFKI 350 (420)
Q Consensus 338 ~Pd~~~R~~Il~~ 350 (420)
+|+.+.+.+|+..
T Consensus 255 pl~~~~~~~I~~~ 267 (363)
T 3hws_A 255 ELSEEALIQILKE 267 (363)
T ss_dssp CCCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998876
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=3.1e-18 Score=165.38 Aligned_cols=178 Identities=28% Similarity=0.378 Sum_probs=124.7
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhc-CCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhhhh
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKL-GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEG 246 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~-gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-~~~g~~ 246 (420)
+|+|++.+++.+..++..+..++.+.... +...+.++||+||||||||++|+++|+.++.+++.++++.+.. .+.|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 48999999999998887633222111111 1135679999999999999999999999999999999998865 455532
Q ss_pred -HHHHHHHHHHH-----HhCCCcEEEecCcccccCCccCCCCCCCH---HHHHHHHHHHHHhc-----CCcCCCCeEEEE
Q 014712 247 -ARMVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLD-----GFDARGNIKVLM 312 (420)
Q Consensus 247 -~~~v~~~f~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~l~-----~~~~~~~v~vI~ 312 (420)
...++.++..+ ....++||||||+|.+.....+. +.+. .++..++.+++... +.....++++|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 34556655532 11246799999999997654221 1111 12455555554311 001235788888
Q ss_pred Ee----CCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHH
Q 014712 313 AT----NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (420)
Q Consensus 313 tt----n~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~ 350 (420)
++ +.+..+++++++ ||+..+.|++|+.+++.+|++.
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 84 567889999998 9999999999999999999983
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=1.9e-18 Score=179.98 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=136.8
Q ss_pred ccccccccCCCCccccccccHHHHHHHHHhhhcccC-ChhhhhhcCCC---CCCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPML-HPEKFVKLGID---PPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~-~~~~~~~~gi~---~~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
...+|++++++.+|++++|++.+++.|++++..... ++..|...|.. +++++||+||||||||++|+++|++++.+
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 346799999999999999999999999999975322 22334444443 56799999999999999999999999999
Q ss_pred EEEEecchhhhhhhhhhHH-------HHHHHHHHH-----HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHH
Q 014712 230 FIRVIGSELVQKYVGEGAR-------MVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (420)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~-------~v~~~f~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (420)
++.++++++.........- .+..+|..+ ....++||||||+|.+... .......+..++.
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~--------~~~~l~~L~~~l~ 176 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--------DRGGVGQLAQFCR 176 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--------STTHHHHHHHHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh--------hHHHHHHHHHHHH
Confidence 9999998765543221100 012233322 2356789999999999542 1223355555555
Q ss_pred HhcCCcCCCCeEEEEEeCCC--CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc--CCCCCCccHHHHHhhCCC
Q 014712 298 QLDGFDARGNIKVLMATNRP--DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLSRLCPN 372 (420)
Q Consensus 298 ~l~~~~~~~~v~vI~ttn~~--~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~--~~~~~~v~l~~la~~t~g 372 (420)
. .++.+|+++|.. ..+. .+. |+...+.|+.|+.+++.+++...+.. +.+.++ .+..|+..+.|
T Consensus 177 ~-------~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G 243 (516)
T 1sxj_A 177 K-------TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG 243 (516)
T ss_dssp H-------CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT
T ss_pred h-------cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 3 233355555543 3333 344 34478999999999999999887754 344444 47888888866
No 43
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=1.1e-18 Score=189.62 Aligned_cols=162 Identities=25% Similarity=0.381 Sum_probs=125.0
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCC---CC-cceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---PK-GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~---~~-~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~ 240 (420)
++++|++.+++.+...+.... .|... |. ++||+||||||||++|+++|+.+ +.+|+.++|+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 458999999999999987622 22222 22 69999999999999999999987 78999999999987
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc------CCCCeEEEEEe
Q 014712 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNIKVLMAT 314 (420)
Q Consensus 241 ~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v~vI~tt 314 (420)
.+.... ..++...+...++||||||||.+ ++.++..|+++++.-.-.. ...++++|+||
T Consensus 563 ~~~~~~----~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 563 KHSTSG----GQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred cccccc----chhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 765542 22334445567789999999987 6889999999998732111 23468999999
Q ss_pred CCCCC------------CCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 315 NRPDT------------LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 315 n~~~~------------ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
|.+.. +.|+|++ ||+.++.|++|+.+++..|++.++..
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 97654 7888888 99999999999999999999888754
No 44
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=1e-18 Score=182.91 Aligned_cols=170 Identities=20% Similarity=0.293 Sum_probs=118.8
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhh----
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ---- 240 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~---- 240 (420)
.-+++++|+++++..+.+.+.....+. .+ ++.+++|+||||||||++|+++|+.++.++..+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 345679999999999988776522221 12 5668999999999999999999999999999998876533
Q ss_pred -----hhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc--CCcC--------C
Q 014712 241 -----KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA--------R 305 (420)
Q Consensus 241 -----~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~~--------~ 305 (420)
.++|.....+...|..+....| |+||||||.+...+. ...+..++++++... .+.. .
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4566666666777777766666 999999999965431 113344444443211 1111 1
Q ss_pred CCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 306 ~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
.++++|+|||.++.++++|++ || ..|.|+.|+.+++..|++.++
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTH
T ss_pred cceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHH
Confidence 578999999999999999999 99 579999999999999999876
No 45
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.2e-18 Score=165.96 Aligned_cols=160 Identities=8% Similarity=0.079 Sum_probs=121.7
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------CCcEEEEecchhh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGSELV 239 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~~~~l~ 239 (420)
+.|.+++++.|..++...+.. ..+.+++||||||||||++++++++++ ...+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 778899999998888764332 568899999999999999999999987 3568889987653
Q ss_pred hh----------hh------hhhHHHHHHHHHHH--HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC
Q 014712 240 QK----------YV------GEGARMVRELFQMA--RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (420)
Q Consensus 240 ~~----------~~------g~~~~~v~~~f~~a--~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 301 (420)
.. .. +.....++..|... ....+.||+|||+|.+. .|..++.+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 32 11 22455677778764 34668899999999995 1467777776543
Q ss_pred CcCCCCeEEEEEeCCCCCC----CccccCcCccc-EEEEccCCCHHHHHHHHHHHHhcC
Q 014712 302 FDARGNIKVLMATNRPDTL----DPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTM 355 (420)
Q Consensus 302 ~~~~~~v~vI~ttn~~~~l----d~al~r~gRfd-~~i~~~~Pd~~~R~~Il~~~~~~~ 355 (420)
....++.||+++|..+.. ++++++ ||. ..|.|++++.++..+|++..++..
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 235689999999988653 455566 886 689999999999999999998664
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=7.1e-17 Score=157.84 Aligned_cols=182 Identities=24% Similarity=0.298 Sum_probs=128.6
Q ss_pred CCCcccccc---ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014712 163 PDVTYNDVG---GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (420)
Q Consensus 163 ~~~~~~~i~---G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~ 236 (420)
|..+|++++ +.......++.++..+ ...+.+++||||||||||++|+++++.+ +.+++++++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 456788875 4555566666666542 1245789999999999999999999988 8999999998
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
++...+.+.........|.... ..+++|||||++.+.+ ....+..+..+++.+. ..+..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~~---~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSG---------KERTQIEFFHIFNTLY---LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTT---------CHHHHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccC---------ChHHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 8866655443322222333322 2478999999999843 3456777777776543 2344555555555
Q ss_pred CC---CCCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 317 PD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 317 ~~---~ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
+. .+++++++ ||. ..+.|++ +.+++..|++.++...++. ++..++.|+..+ |
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g 199 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K 199 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C
Confidence 54 68899998 886 7899999 9999999999998755443 223377888888 5
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.73 E-value=1e-17 Score=148.95 Aligned_cols=158 Identities=20% Similarity=0.329 Sum_probs=118.2
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------C
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------D 227 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~ 227 (420)
+.+...+.+|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +
T Consensus 12 l~~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~ 78 (187)
T 2p65_A 12 LTALARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKG 78 (187)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTT
T ss_pred HHHHHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcC
Confidence 34455677899999999999999888754 245689999999999999999999986 7
Q ss_pred CcEEEEecchhhh--hhhhhhHHHHHHHHHHHHhC-CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 228 ACFIRVIGSELVQ--KYVGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 228 ~~~i~v~~~~l~~--~~~g~~~~~v~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
.+++.+++..+.. .+.+.....+..++..+... .+.+|||||+|.+.+.+... ....+..+.+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~~~~~l~~~~~------- 149 (187)
T 2p65_A 79 RKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALDAGNILKPMLA------- 149 (187)
T ss_dssp CEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCCTHHHHHHHHH-------
T ss_pred CeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchHHHHHHHHHHh-------
Confidence 7888888877653 24455566677777776554 67899999999997554311 112334455555543
Q ss_pred CCCeEEEEEeCCCC-----CCCccccCcCcccEEEEccCCC
Q 014712 305 RGNIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPD 340 (420)
Q Consensus 305 ~~~v~vI~ttn~~~-----~ld~al~r~gRfd~~i~~~~Pd 340 (420)
..++.+|++||.+. .+++++++ ||. .+.++.|+
T Consensus 150 ~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 150 RGELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp TTCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred cCCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 45678999999765 68999999 997 49999886
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.72 E-value=7.1e-18 Score=173.53 Aligned_cols=179 Identities=21% Similarity=0.305 Sum_probs=130.7
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---------- 226 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---------- 226 (420)
.+.+...+.++++|+|.++.++.+.+.+.. ....++||+||||||||++|+++|..+
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 235 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 455667788999999999999999998875 234579999999999999999999986
Q ss_pred CCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCC
Q 014712 227 DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (420)
Q Consensus 227 ~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (420)
+.+++.+++. ..+.|+.+..++.+|..+....++||||| + ....++.+...+ ..+
T Consensus 236 ~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L-------~~g 290 (468)
T 3pxg_A 236 DKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARG 290 (468)
T ss_dssp SCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSS
T ss_pred CCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh-------cCC
Confidence 7788888887 66778877888999999998889999999 1 122233333222 256
Q ss_pred CeEEEEEeCCCC-----CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcC----CCC-CCccHHHHHhhCCCCccc
Q 014712 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLSRLCPNSTGK 376 (420)
Q Consensus 307 ~v~vI~ttn~~~-----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~----~~~-~~v~l~~la~~t~g~sga 376 (420)
.+.+|++||.+. .+++++++ ||. .+.|+.|+.+++..|++.++..+ ++. .+..+..++.++.+|.+.
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence 789999999987 68999999 996 59999999999999999887653 222 223466777777776654
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.72 E-value=4.2e-17 Score=166.59 Aligned_cols=178 Identities=24% Similarity=0.308 Sum_probs=128.9
Q ss_pred cccccCCCCccccccccHHHH---HHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 157 MTVEEKPDVTYNDVGGCKEQI---EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~---~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.+.+...+.+|++++|++..+ ..|+..+.. ....++|||||||||||++|+++|+.++.+|+.+
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 456677889999999999999 788888865 1235899999999999999999999999999999
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeE
Q 014712 234 IGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (420)
++... +...++.++..+. ...++||||||||.+. ...+..++..++. +.+.
T Consensus 82 ~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~-----------~~~q~~LL~~le~-------~~v~ 136 (447)
T 3pvs_A 82 SAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFN-----------KSQQDAFLPHIED-------GTIT 136 (447)
T ss_dssp ETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCE
T ss_pred EeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC-----------HHHHHHHHHHHhc-------CceE
Confidence 87543 2233455555443 3567899999999983 3345556666552 4577
Q ss_pred EEEEe--CCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCC-------CC-CCccHHHHHhhCCCCcc
Q 014712 310 VLMAT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-------CE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 310 vI~tt--n~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~-------~~-~~v~l~~la~~t~g~sg 375 (420)
+|++| |....++++|++ |+ .++.|++|+.+++..+++.++.... +. .+..++.|+..+.|-.+
T Consensus 137 lI~att~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R 209 (447)
T 3pvs_A 137 FIGATTENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDAR 209 (447)
T ss_dssp EEEEESSCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHH
T ss_pred EEecCCCCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHH
Confidence 77777 334678999999 88 4788999999999999999987521 11 12236677777665433
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=5.6e-17 Score=159.52 Aligned_cols=184 Identities=17% Similarity=0.228 Sum_probs=136.1
Q ss_pred cccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC------C
Q 014712 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD------A 228 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~------~ 228 (420)
...|.+++++.+|++++|.+++++.+..++.. ..+.+++|+||||||||++|+++|+.++ .
T Consensus 24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp --CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 34688899999999999999999999988865 1223599999999999999999999753 4
Q ss_pred cEEEEecchhhhhhhhhhHHHHHHHHHHHH----------------hCCCcEEEecCcccccCCccCCCCCCCHHHHHHH
Q 014712 229 CFIRVIGSELVQKYVGEGARMVRELFQMAR----------------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292 (420)
Q Consensus 229 ~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----------------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l 292 (420)
.++.+++++.... ..++..+.... ...+.||||||+|.+ +...+..+
T Consensus 91 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~L 153 (353)
T 1sxj_D 91 RILELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSAL 153 (353)
T ss_dssp SEEEECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHH
T ss_pred ceEEEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHH
Confidence 5777877653211 11111111111 134569999999998 45667778
Q ss_pred HHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCC
Q 014712 293 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCP 371 (420)
Q Consensus 293 ~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~ 371 (420)
..+++.. ..+..+|++||.+..+++++++ |+. .+.|++|+.++...+++..+...++. ++..++.++..+.
T Consensus 154 l~~le~~-----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 154 RRTMETY-----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 225 (353)
T ss_dssp HHHHHHT-----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTS
T ss_pred HHHHHhc-----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 8877764 3467788899999999999999 884 89999999999999999888655432 2334788888888
Q ss_pred CCccc
Q 014712 372 NSTGK 376 (420)
Q Consensus 372 g~sga 376 (420)
|..+.
T Consensus 226 G~~r~ 230 (353)
T 1sxj_D 226 GDLRR 230 (353)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 75543
No 51
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=9.9e-17 Score=158.23 Aligned_cols=183 Identities=14% Similarity=0.225 Sum_probs=132.3
Q ss_pred cccccCCCCccccccccHHHHHHHHHhh-hcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC-------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVV-ELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA------- 228 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i-~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~------- 228 (420)
+|++++++.+|++++|++.+++.++.++ .. + ..+. ++|+||+|+|||++++++|+.+..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 6899999999999999999999998887 32 1 2233 999999999999999999996411
Q ss_pred ----------------------cEEEEecchhhhhhhhhhHHHHHHHHHHHH--------------hCCCcEEEecCccc
Q 014712 229 ----------------------CFIRVIGSELVQKYVGEGARMVRELFQMAR--------------SKKACIVFFDEVDA 272 (420)
Q Consensus 229 ----------------------~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~--------------~~~p~Il~iDEiD~ 272 (420)
.++.++.+.... .....++..+..+. ...|.||+|||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS 145 (354)
T ss_dssp ----------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS
T ss_pred ecceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc
Confidence 122232222100 00112344444332 23577999999998
Q ss_pred ccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
+ +...++.+..++++. ..++.+|++||.++.+.+++++ |+ ..+.|++|+.++...+++..+
T Consensus 146 L-----------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 146 L-----------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp S-----------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred c-----------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 6 567788888888764 3468899999999999999998 88 889999999999999999988
Q ss_pred hcCCCC-C-CccHHHHHhhCCCCcc
Q 014712 353 RTMNCE-R-DIRFELLSRLCPNSTG 375 (420)
Q Consensus 353 ~~~~~~-~-~v~l~~la~~t~g~sg 375 (420)
+..++. + +..++.++..+.|-.+
T Consensus 207 ~~~~~~~~~~~~l~~i~~~~~G~~r 231 (354)
T 1sxj_E 207 TNERIQLETKDILKRIAQASNGNLR 231 (354)
T ss_dssp HHHTCEECCSHHHHHHHHHHTTCHH
T ss_pred HHcCCCCCcHHHHHHHHHHcCCCHH
Confidence 665543 2 3447788888776544
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.71 E-value=1e-16 Score=159.14 Aligned_cols=185 Identities=20% Similarity=0.234 Sum_probs=132.3
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecc
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGS 236 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~ 236 (420)
.+++++|.++.++.+..++...+.. ..+.+++|+||||||||++|+++++.+ +..++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4477999999999999988653222 456789999999999999999999987 7889999987
Q ss_pred hhhhhh----------------hhh-hHHHHHHHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHH
Q 014712 237 ELVQKY----------------VGE-GARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (420)
Q Consensus 237 ~l~~~~----------------~g~-~~~~v~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (420)
.....+ .+. .......++..... ..|++|||||+|.+...+ ..+..+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 532211 011 22234444444433 447899999999984321 146777788877
Q ss_pred hcCCcCCCCeEEEEEeCCC---CCCCccccCcCcccE-EEEccCCCHHHHHHHHHHHHhc----CCCCCCccHHHHHhhC
Q 014712 299 LDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLSRLC 370 (420)
Q Consensus 299 l~~~~~~~~v~vI~ttn~~---~~ld~al~r~gRfd~-~i~~~~Pd~~~R~~Il~~~~~~----~~~~~~v~l~~la~~t 370 (420)
+.......++.+|++||.+ +.+++.+.+ ||.. .+.|++|+.++..+|++.++.. ..+.++ .++.++..+
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~ 235 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAALA 235 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 6543225678899999987 678889988 8875 8999999999999999998864 233333 367777777
Q ss_pred C
Q 014712 371 P 371 (420)
Q Consensus 371 ~ 371 (420)
.
T Consensus 236 ~ 236 (387)
T 2v1u_A 236 A 236 (387)
T ss_dssp H
T ss_pred H
Confidence 7
No 53
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=1.4e-16 Score=154.82 Aligned_cols=186 Identities=18% Similarity=0.247 Sum_probs=136.1
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC-----CcE
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 230 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~ 230 (420)
.+|.+++++.+|++++|++..++.+..++.. + ...+++|+||||||||++|+++++.+. ..+
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 4688899999999999999999999998865 1 223599999999999999999999863 347
Q ss_pred EEEecchhhhhhhhhhHHHHHHHHHHH-H-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCe
Q 014712 231 IRVIGSELVQKYVGEGARMVRELFQMA-R-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (420)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~~f~~a-~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (420)
+.+++++.... ......+....... . ...+.+|+|||+|.+ +...+..+..+++.. ..++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~ 141 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEMF-----SSNV 141 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTE
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHhc-----CCCC
Confidence 77777654221 11111111111100 1 145789999999998 456677777777652 4578
Q ss_pred EEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcc
Q 014712 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 309 ~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sg 375 (420)
.+|++||.++.+.+++.+ |+. .+.|++|+.++...+++.++...++. ++..++.++..+.|-.+
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 206 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR 206 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHH
Confidence 899999999999999988 884 88999999999999999888765543 22346777777766444
No 54
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.71 E-value=2.6e-17 Score=159.32 Aligned_cols=186 Identities=21% Similarity=0.222 Sum_probs=132.6
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcE
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACF 230 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~ 230 (420)
.+|.+++++.+|++++|.+..++.+..++.. ....+++||||||||||++|+++++.+ +.++
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 71 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNF 71 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHC
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCe
Confidence 3578889999999999999999999988764 122349999999999999999999986 3457
Q ss_pred EEEecchhhhhhhhhhHHHHHHHHHHH-H-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCe
Q 014712 231 IRVIGSELVQKYVGEGARMVRELFQMA-R-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (420)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~~f~~a-~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (420)
+.+++++.... ......+....... . ...+.+|+|||+|.+ +...+..+..++ +. ...++
T Consensus 72 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~l---e~--~~~~~ 133 (319)
T 2chq_A 72 IEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTM---EM--YSKSC 133 (319)
T ss_dssp EEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-----------CHHHHHTTGGGT---SS--SSSSE
T ss_pred EEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-----------CHHHHHHHHHHH---Hh--cCCCC
Confidence 88887764321 11112222221110 1 145789999999998 344444444443 32 34678
Q ss_pred EEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcc
Q 014712 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 309 ~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sg 375 (420)
.+|++||.+..+.+++.+ |+ ..+.|++|+.+++..++..++++.++. ++..++.++..+.|..+
T Consensus 134 ~~i~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r 198 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQS--RC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFR 198 (319)
T ss_dssp EEEEEESCGGGSCHHHHT--TC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHH
T ss_pred eEEEEeCChhhcchHHHh--hC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 899999999999999999 88 489999999999999999998766553 22345667776666443
No 55
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=7.1e-17 Score=148.68 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=132.9
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~------- 229 (420)
.|.+.+.+..|++++|.+..++.|..++... ..+..++|+||+|+|||++|+++++.+...
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~ 79 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 79 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 4677788889999999999999999988651 234579999999999999999999876432
Q ss_pred -----------------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
++.+.... ......++.++..+. ...+.+|+|||+|.+ +...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~ 142 (250)
T 1njg_A 80 CGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHS 142 (250)
T ss_dssp CSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHH
T ss_pred CcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHH
Confidence 22222211 112233444444432 245789999999997 4555
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
+..+..++.. ...++.+|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++...+.. .+..++.++
T Consensus 143 ~~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 143 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 6666666543 24578899999999889999988 76 789999999999999999988765443 223467888
Q ss_pred hhCCCCcc
Q 014712 368 RLCPNSTG 375 (420)
Q Consensus 368 ~~t~g~sg 375 (420)
+.+.|..+
T Consensus 215 ~~~~G~~~ 222 (250)
T 1njg_A 215 RAAEGSLR 222 (250)
T ss_dssp HHHTTCHH
T ss_pred HHcCCCHH
Confidence 88888554
No 56
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.70 E-value=1.6e-16 Score=162.24 Aligned_cols=184 Identities=21% Similarity=0.358 Sum_probs=128.4
Q ss_pred CCCCcccccc-cc--HHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEE
Q 014712 162 KPDVTYNDVG-GC--KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (420)
Q Consensus 162 ~~~~~~~~i~-G~--~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v 233 (420)
.|..+|++++ |. ......+..+...+ + . +.+++||||||||||+||+++++.+ +.+++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4556888865 53 33444555444431 1 1 5689999999999999999999987 8889999
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
++.++...+.+.........|.......+++|||||++.+.+ ....+..++.+++.+. ..+.. +|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------~~~~q~~l~~~l~~l~---~~~~~-iIit 233 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------KTGVQTELFHTFNELH---DSGKQ-IVIC 233 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------CHHHHHHHHHHHHHHH---TTTCE-EEEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------ChHHHHHHHHHHHHHH---HCCCe-EEEE
Confidence 998876655443322222234333333688999999999853 2356777777777653 23334 5555
Q ss_pred eCC-CCC---CCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhcCC--CCCCccHHHHHhhCCCC
Q 014712 314 TNR-PDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMN--CERDIRFELLSRLCPNS 373 (420)
Q Consensus 314 tn~-~~~---ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~~~--~~~~v~l~~la~~t~g~ 373 (420)
|+. +.. +++++++ ||. ..+.+++|+.++|..|++..+...+ +++++ ++.|+..+.|-
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~gn 298 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDDN 298 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCSC
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCC
Confidence 554 443 7899998 875 7899999999999999999886443 44443 78899888763
No 57
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.3e-16 Score=154.78 Aligned_cols=184 Identities=17% Similarity=0.237 Sum_probs=138.8
Q ss_pred ccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcE
Q 014712 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACF 230 (420)
Q Consensus 156 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~ 230 (420)
..|.+++++.+|++++|.+..++.+..++.. + ..+ +++||||+|+|||++|+++++.+ +..+
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 75 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGV 75 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCE
Confidence 3577888999999999999999999999864 1 223 49999999999999999999985 3457
Q ss_pred EEEecchhhhhhhhhhHHHHHHHHHHHH-------hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc
Q 014712 231 IRVIGSELVQKYVGEGARMVRELFQMAR-------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (420)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~~f~~a~-------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 303 (420)
+.+++++.. +...++.++.... ...+.+|+|||+|.+ ....+..+..+++..
T Consensus 76 ~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~---- 134 (323)
T 1sxj_B 76 LELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMELY---- 134 (323)
T ss_dssp EEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHHT----
T ss_pred EEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhcc----
Confidence 777766532 1233444444433 234789999999998 345566777777652
Q ss_pred CCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCCcccc
Q 014712 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNSTGKH 377 (420)
Q Consensus 304 ~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~sgad 377 (420)
..++.+|++||.+..+.+++.+ |+ ..+.|++|+.++..++++.+++..++. ++..++.++..+.|..+..
T Consensus 135 -~~~~~~il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a 205 (323)
T 1sxj_B 135 -SNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQA 205 (323)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHH
T ss_pred -CCCceEEEEeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 4678899999999999999998 77 489999999999999999988654443 2234677888887765543
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=3.1e-17 Score=180.42 Aligned_cols=192 Identities=21% Similarity=0.306 Sum_probs=132.2
Q ss_pred ccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------C
Q 014712 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------D 227 (420)
Q Consensus 158 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----------~ 227 (420)
+.+...+.+|++++|.++.++.+.+++.. ..+.+++|+||||||||++|+++|+.+ +
T Consensus 160 l~~~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~ 226 (854)
T 1qvr_A 160 LTRLAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKG 226 (854)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTT
T ss_pred HHHHHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcC
Confidence 44556778999999999999999988765 245689999999999999999999987 8
Q ss_pred CcEEEEecchhh--hhhhhhhHHHHHHHHHHHHhC-CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 228 ACFIRVIGSELV--QKYVGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 228 ~~~i~v~~~~l~--~~~~g~~~~~v~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
.+++.++++.+. ..+.|+.+..++.+|..+... .|+||||||+|.+.+.+.. .+.....+.+..++.
T Consensus 227 ~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~------- 296 (854)
T 1qvr_A 227 KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALA------- 296 (854)
T ss_dssp CEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH-------
T ss_pred CeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHh-------
Confidence 899999998886 467788888899999988774 6899999999999765422 122344455555553
Q ss_pred CCCeEEEEEeCCCC----CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcC----CCC-CCccHHHHHhhCCCCcc
Q 014712 305 RGNIKVLMATNRPD----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLSRLCPNSTG 375 (420)
Q Consensus 305 ~~~v~vI~ttn~~~----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~----~~~-~~v~l~~la~~t~g~sg 375 (420)
.+++.+|++||.++ .+++++.+ ||+. +.|+.|+.+++.+|++.++..+ ++. .+..+..++.++.+|..
T Consensus 297 ~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 297 RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCC
T ss_pred CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcc
Confidence 45678999998764 47999999 9975 9999999999999998777543 221 22336677777766654
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=3.2e-16 Score=170.26 Aligned_cols=163 Identities=22% Similarity=0.320 Sum_probs=125.1
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCC----CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhh---
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--- 241 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~----~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~--- 241 (420)
+++|++++++.+..++.. ...|+. |..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 478999999888887765 233443 23369999999999999999999999999999999988653
Q ss_pred ---------hhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC------CC
Q 014712 242 ---------YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA------RG 306 (420)
Q Consensus 242 ---------~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~------~~ 306 (420)
|+|.... +.+....+...++||||||||.+ +++++..|+++++.-.-... ..
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 3333221 12344445566789999999987 67889999998885321111 14
Q ss_pred CeEEEEEeCCCC-------------------------CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 307 NIKVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 307 ~v~vI~ttn~~~-------------------------~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
+++||+|||... .++|+|++ ||+..+.|++|+.+++..|++.++..
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 688999999753 56788888 99999999999999999999988863
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.68 E-value=5.3e-17 Score=176.44 Aligned_cols=177 Identities=22% Similarity=0.307 Sum_probs=128.5
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---------- 226 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---------- 226 (420)
.+.+...+..+++++|.++.++.+.+++.. ..+.++||+||||||||++|+++|+.+
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~ 235 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 455667778899999999999999998865 345579999999999999999999986
Q ss_pred CCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCC
Q 014712 227 DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (420)
Q Consensus 227 ~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (420)
+..++.+++ ...|.|+.+..++.+|..+....++||||| + ....+..+... + ..+
T Consensus 236 ~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~---l----~~~ 290 (758)
T 3pxi_A 236 DKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPS---L----ARG 290 (758)
T ss_dssp SCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCC---T----TSS
T ss_pred CCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHH---H----hcC
Confidence 788888877 456788888899999999999999999999 1 12223333222 2 266
Q ss_pred CeEEEEEeCCCC-----CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-----CCccHHHHHhhCCCCc
Q 014712 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-----RDIRFELLSRLCPNST 374 (420)
Q Consensus 307 ~v~vI~ttn~~~-----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-----~~v~l~~la~~t~g~s 374 (420)
.+.+|++||... .++++++| || ..+.|+.|+.+++.+||+.+...+... .+..+..++.++.+|.
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 799999999988 79999999 99 679999999999999999877663222 1223556666655543
No 61
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.68 E-value=4.5e-16 Score=150.64 Aligned_cols=170 Identities=25% Similarity=0.343 Sum_probs=120.9
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh--
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY-- 242 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~-- 242 (420)
++++|++.+++.+...+....... ...-.+..+++|+||||||||++|+++|+.+ +.+++.++++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 348899999999999887621100 0001223479999999999999999999987 5679999988764321
Q ss_pred ---hhhhH-----HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc------CCCCe
Q 014712 243 ---VGEGA-----RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNI 308 (420)
Q Consensus 243 ---~g~~~-----~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v 308 (420)
.|... .....+........+++|||||+|.+ +...+..++++++...-.. .-.++
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 161 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNT 161 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTTE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCc
Confidence 11100 00012223334455689999999998 5778888888887643111 11367
Q ss_pred EEEEEeCC--------------------------CCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 309 KVLMATNR--------------------------PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 309 ~vI~ttn~--------------------------~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
++|+|||. ...++++|++ ||+..+.|++|+.+++..|++.+++.
T Consensus 162 iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp EEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred EEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 79999998 4467888888 99999999999999999999988755
No 62
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.68 E-value=4.1e-16 Score=155.68 Aligned_cols=179 Identities=24% Similarity=0.258 Sum_probs=114.7
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhh-----------------hcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFV-----------------KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~-----------------~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
.|+|++.+++.|..++..+........ .-...++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999988853322221100 011245678999999999999999999999999999
Q ss_pred EEecchhh-hhhhhhh-HHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCC---CHHHHHHHHHHHHHhc-C
Q 014712 232 RVIGSELV-QKYVGEG-ARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGG---DNEVQRTMLEIVNQLD-G 301 (420)
Q Consensus 232 ~v~~~~l~-~~~~g~~-~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~---~~~~~~~l~~ll~~l~-~ 301 (420)
.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+....... ...++..|+.+++... .
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444443 344555554322 23578999999999976543322111 2237777777776321 0
Q ss_pred C---------------cCCCCeEEEEEeCCC-----------------------------------------CCCCcccc
Q 014712 302 F---------------DARGNIKVLMATNRP-----------------------------------------DTLDPALL 325 (420)
Q Consensus 302 ~---------------~~~~~v~vI~ttn~~-----------------------------------------~~ld~al~ 325 (420)
+ -...++.+|++||.. ..+.|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 112567788887720 12456777
Q ss_pred CcCcccEEEEccCCCHHHHHHHHH
Q 014712 326 RPGRLDRKVEFGLPDLESRTQIFK 349 (420)
Q Consensus 326 r~gRfd~~i~~~~Pd~~~R~~Il~ 349 (420)
+ ||+.++.|++++.++...|+.
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHh
Confidence 7 999999999999999998886
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.67 E-value=1.7e-16 Score=172.48 Aligned_cols=195 Identities=22% Similarity=0.285 Sum_probs=143.7
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---------- 226 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---------- 226 (420)
.+.+...+..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++|..+
T Consensus 175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~ 241 (758)
T 1r6b_X 175 NLNQLARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA 241 (758)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGT
T ss_pred hHHHHHhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 345556677899999999999999988865 246689999999999999999999976
Q ss_pred CCcEEEEecchhh--hhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC
Q 014712 227 DACFIRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (420)
Q Consensus 227 ~~~~i~v~~~~l~--~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (420)
+..++.+++..+. ..+.|..+..++.+|..+....++||||||+|.+.+.+... .+..+.. .++ ..+-.
T Consensus 242 ~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~----~~L---~~~l~ 312 (758)
T 1r6b_X 242 DCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAA----NLI---KPLLS 312 (758)
T ss_dssp TCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHH----HHH---SSCSS
T ss_pred CCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHH----HHH---HHHHh
Confidence 6677888777765 35778888899999999888788999999999997654221 1122222 222 22234
Q ss_pred CCCeEEEEEeCCC-----CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcC----CCC-CCccHHHHHhhCCCCc
Q 014712 305 RGNIKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLSRLCPNST 374 (420)
Q Consensus 305 ~~~v~vI~ttn~~-----~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~----~~~-~~v~l~~la~~t~g~s 374 (420)
.+++.+|++||.+ -.+|++|.+ ||. .+.|+.|+.+++.+|++.+...+ .+. .+..+..++.++.+|.
T Consensus 313 ~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i 389 (758)
T 1r6b_X 313 SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_dssp SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhc
Confidence 6778899999864 357899999 996 79999999999999999877542 221 2223566777776665
Q ss_pred cc
Q 014712 375 GK 376 (420)
Q Consensus 375 ga 376 (420)
+.
T Consensus 390 ~~ 391 (758)
T 1r6b_X 390 ND 391 (758)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=2.9e-16 Score=156.18 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=128.5
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-----------CCcEEEEecc
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----------DACFIRVIGS 236 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-----------~~~~i~v~~~ 236 (420)
++++|.++.++.+..++...... ..+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 67999999999999888653322 456789999999999999999999987 8899999987
Q ss_pred hhh-hhh------h-----------hh-hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHH-HHHHH
Q 014712 237 ELV-QKY------V-----------GE-GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRT-MLEIV 296 (420)
Q Consensus 237 ~l~-~~~------~-----------g~-~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~-l~~ll 296 (420)
... ..+ . +. ....+..++..+....+ +|||||+|.+...+ .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 643 110 0 11 12334444444444444 99999999985321 1233 44444
Q ss_pred HHhcCCcCCCCeEEEEEeCCC---CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc----CCCCCCccHHHHHhh
Q 014712 297 NQLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLSRL 369 (420)
Q Consensus 297 ~~l~~~~~~~~v~vI~ttn~~---~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~----~~~~~~v~l~~la~~ 369 (420)
... .++.+|++||.+ +.+++++.+ ||...+.|++|+.++..+|++.++.. ..+. +..++.+++.
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHH
Confidence 322 678999999987 678899888 88779999999999999999998863 2333 3346778888
Q ss_pred CCCCcc
Q 014712 370 CPNSTG 375 (420)
Q Consensus 370 t~g~sg 375 (420)
+.+.+|
T Consensus 231 ~~~~~G 236 (384)
T 2qby_B 231 SAKEHG 236 (384)
T ss_dssp HHTTCC
T ss_pred HHhccC
Confidence 774444
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.66 E-value=1.2e-15 Score=149.90 Aligned_cols=163 Identities=18% Similarity=0.275 Sum_probs=106.2
Q ss_pred ccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC-------c---
Q 014712 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-------C--- 229 (420)
Q Consensus 160 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~-------~--- 229 (420)
...++.+|++++|.+..++.+...... ..+.++|||||||||||++|+++|+.++. +
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~ 82 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSS 82 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccc
Confidence 445778999999999987765544332 12346999999999999999999998763 1
Q ss_pred -----------------------EEEEecchhhhhhhhhhHHHHHHHHHHH---------HhCCCcEEEecCcccccCCc
Q 014712 230 -----------------------FIRVIGSELVQKYVGEGARMVRELFQMA---------RSKKACIVFFDEVDAIGGAR 277 (420)
Q Consensus 230 -----------------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a---------~~~~p~Il~iDEiD~l~~~r 277 (420)
++.+..........|.. .+...+... ....+++|||||+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l---- 156 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLL---- 156 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS----
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhC----
Confidence 11111100000111110 001111111 0113679999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhc----CC----cCCCCeEEEEEeCCCC-CCCccccCcCcccEEEEccCC-CHHHHHHH
Q 014712 278 FDDGVGGDNEVQRTMLEIVNQLD----GF----DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLP-DLESRTQI 347 (420)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~l~----~~----~~~~~v~vI~ttn~~~-~ld~al~r~gRfd~~i~~~~P-d~~~R~~I 347 (420)
+...+..++.+++.-. .. ....++.+|+|||..+ .++++|++ ||+..+.++.| +.+.+.+|
T Consensus 157 -------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 157 -------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp -------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred -------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 5677888888887521 10 0123788999999754 89999999 99999999999 67777788
Q ss_pred HHH
Q 014712 348 FKI 350 (420)
Q Consensus 348 l~~ 350 (420)
++.
T Consensus 228 l~~ 230 (350)
T 1g8p_A 228 IRR 230 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 866
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.65 E-value=1.3e-15 Score=150.94 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=133.9
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc-------
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~------- 229 (420)
.+.+++.+.+|++++|.+..++.+..++... ..+..++|+||+|||||++|+++|+.+++.
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 72 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSC
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 3567788889999999999999999988641 234568999999999999999999987542
Q ss_pred -----------------EEEEecchhhhhhhhhhHHHHHHHHHHHH----hCCCcEEEecCcccccCCccCCCCCCCHHH
Q 014712 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (420)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (420)
++.+++.. ..+...++.++..+. ...+.||+|||+|.+ +...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~ 135 (373)
T 1jr3_A 73 CGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHS 135 (373)
T ss_dssp CSSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHHH
T ss_pred CcccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cHHH
Confidence 22222211 011223455555543 234679999999998 4556
Q ss_pred HHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014712 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLS 367 (420)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la 367 (420)
+..+..+++. ...++.+|++|+.+..+.+.+++ |+ ..+.|++|+.++...+++.+++..++. .+..+..++
T Consensus 136 ~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~ 207 (373)
T 1jr3_A 136 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 (373)
T ss_dssp HHHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666653 35678899999999889999988 77 789999999999999999988765543 222367788
Q ss_pred hhCCCCcc
Q 014712 368 RLCPNSTG 375 (420)
Q Consensus 368 ~~t~g~sg 375 (420)
..+.|..+
T Consensus 208 ~~~~G~~r 215 (373)
T 1jr3_A 208 RAAEGSLR 215 (373)
T ss_dssp HHSSSCHH
T ss_pred HHCCCCHH
Confidence 88877555
No 67
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.63 E-value=2.6e-15 Score=138.89 Aligned_cols=173 Identities=13% Similarity=0.173 Sum_probs=120.7
Q ss_pred CCCccccccc---cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014712 163 PDVTYNDVGG---CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (420)
Q Consensus 163 ~~~~~~~i~G---~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~ 236 (420)
+..+|++++| ....++.++.++.. ..+.+++|+||||||||++|+++++.+ +..++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3467888765 45777777777654 245789999999999999999999876 4778888888
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
++....... +. ....+.+|||||++.+.. ....+..+..+++... ..+.+.+|++|+.
T Consensus 90 ~~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~---~~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LE--GLEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVA---EQKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GT--TGGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHH---HHCSCEEEEEESS
T ss_pred HHHHHHHHH--------HH--hccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHH---HcCCCeEEEEcCC
Confidence 765443211 11 114567999999999843 3344666777766543 1333435555554
Q ss_pred -CC---CCCccccCcCccc--EEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 317 -PD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 317 -~~---~ld~al~r~gRfd--~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
+. .+++++.+ ||. ..+.|++|+.+++.++++.++...++. .+..++.++..+.|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 33 45578888 775 899999999999999999998755443 22346777887765
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=3.2e-15 Score=147.19 Aligned_cols=181 Identities=25% Similarity=0.302 Sum_probs=131.4
Q ss_pred cccccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC-----c
Q 014712 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-----C 229 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~-----~ 229 (420)
...|.+++++.+|+++.|++.+++.|..++.. | ..| +++||||||||||++|+++|+.+.. .
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 45689999999999999999999999988864 1 122 4999999999999999999998632 3
Q ss_pred EEEEecchhhhhhhhhhHHHHHHHHHHHH------hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc
Q 014712 230 FIRVIGSELVQKYVGEGARMVRELFQMAR------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (420)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~~v~~~f~~a~------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 303 (420)
+..+++++..+ ...++..+.... ...+.|++|||+|.+ ....+..+..+++..
T Consensus 79 ~~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~---- 137 (340)
T 1sxj_C 79 VLELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERY---- 137 (340)
T ss_dssp EEEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT----
T ss_pred EEEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcC----
Confidence 56666554211 122333332222 123679999999998 455677777777753
Q ss_pred CCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhCCCC
Q 014712 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLCPNS 373 (420)
Q Consensus 304 ~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t~g~ 373 (420)
..++.+|++||.+..+.+++++ |+ ..+.|+.++.++..+++...+...++. .+.....++.++.|-
T Consensus 138 -~~~~~~il~~n~~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~ 204 (340)
T 1sxj_C 138 -TKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGD 204 (340)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTC
T ss_pred -CCCeEEEEEecCccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 4567888999999999999999 88 478999999999999888888443332 222356666666553
No 69
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.63 E-value=4.5e-16 Score=152.51 Aligned_cols=166 Identities=22% Similarity=0.247 Sum_probs=118.1
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
.+...+..+++++|.+..++.+...+.. +.++||+||||||||++|+++|+.++.++..+++...
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~ 82 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCC
Confidence 4444555677899999999988877754 3589999999999999999999999999999887421
Q ss_pred h--hhhhhhhH-HHHHHHHHHHHhCC---CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc----C--CcCCC
Q 014712 239 V--QKYVGEGA-RMVRELFQMARSKK---ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----G--FDARG 306 (420)
Q Consensus 239 ~--~~~~g~~~-~~v~~~f~~a~~~~---p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~--~~~~~ 306 (420)
. ....|... ......|. .... .+||||||+|.+ +...+..+.+.+++.. + .....
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~ 149 (331)
T 2r44_A 83 LLPSDLIGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDN 149 (331)
T ss_dssp CCHHHHHEEEEEETTTTEEE--EEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCS
T ss_pred CChhhcCCceeecCCCCceE--eccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCC
Confidence 1 11111100 00000000 0111 369999999997 5677888888887632 1 11234
Q ss_pred CeEEEEEeCCCC-----CCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhc
Q 014712 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 307 ~v~vI~ttn~~~-----~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
++.+|+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.++..
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 677888888543 38999999 99989999999999999999998754
No 70
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.61 E-value=1.6e-14 Score=142.11 Aligned_cols=190 Identities=19% Similarity=0.277 Sum_probs=134.0
Q ss_pred cccccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 157 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
.|++...+.+|++++|.+.+++.+...+..... .-.++.+++|+|||||||||||+++|+.++.++...+++
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~ 85 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 85 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEech
Confidence 345666777899999999999988877754110 113557899999999999999999999999988777765
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc-------CCc------
Q 014712 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFD------ 303 (420)
Q Consensus 237 ~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-------~~~------ 303 (420)
.+.. ...+..++. .....+|+||||++.+. ...+..+...+.... +..
T Consensus 86 ~~~~------~~~l~~~~~--~~~~~~v~~iDE~~~l~-----------~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~ 146 (334)
T 1in4_A 86 VLVK------QGDMAAILT--SLERGDVLFIDEIHRLN-----------KAVEELLYSAIEDFQIDIMIGKGPSAKSIRI 146 (334)
T ss_dssp TCCS------HHHHHHHHH--HCCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCCCC-------------
T ss_pred HhcC------HHHHHHHHH--HccCCCEEEEcchhhcC-----------HHHHHHHHHHHHhcccceeeccCcccccccc
Confidence 4421 111222222 12346799999999983 345555555444321 000
Q ss_pred CCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCC-CccHHHHHhhCCCCcc
Q 014712 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLSRLCPNSTG 375 (420)
Q Consensus 304 ~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~-~v~l~~la~~t~g~sg 375 (420)
....+.++++|+.+..|++.+++ ||...+.+++|+.++..+|++...+..++.- +..+..||..+.|..+
T Consensus 147 ~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R 217 (334)
T 1in4_A 147 DIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPR 217 (334)
T ss_dssp --CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHH
T ss_pred cCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChH
Confidence 01246788899999999999999 9988999999999999999999887665542 2346788888888665
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=5e-15 Score=162.86 Aligned_cols=166 Identities=26% Similarity=0.404 Sum_probs=121.4
Q ss_pred cccccccHHHHHHHHHhhhcccCChhhhhhcCCC----CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhh
Q 014712 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (420)
Q Consensus 167 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~----~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~ 239 (420)
+.+|+|.+.+++.+...+... ..|+. |..++||+||||||||++|+++|+.+ +.+|+.++|+++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 456899999999999988752 22222 22479999999999999999999988 7899999998775
Q ss_pred hhh-----hhhhHHH-----HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcC-----
Q 014712 240 QKY-----VGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA----- 304 (420)
Q Consensus 240 ~~~-----~g~~~~~-----v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~----- 304 (420)
... .|....+ .+.+....+...+++|||||+|.+ +.+++..|+++++.-.-...
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCE
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEe
Confidence 432 1111111 123344445566789999999987 67888888888875321111
Q ss_pred -CCCeEEEEEeCCC--------------------------CCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHh
Q 014712 305 -RGNIKVLMATNRP--------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 305 -~~~v~vI~ttn~~--------------------------~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
-.+++||+|||.. ..+.|+|++ ||+..+.|.+|+.++...|++.++.
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 1368899999972 346677877 9999999999999999999988875
No 72
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=5.7e-15 Score=146.23 Aligned_cols=188 Identities=19% Similarity=0.285 Sum_probs=127.8
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc------CCcEEEEecchh
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------DACFIRVIGSEL 238 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~------~~~~i~v~~~~l 238 (420)
..+++++|.++.++.+.+++...+.. ..+..++|+||+|||||+|++++++.+ +..++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34477999999999999988753221 456789999999999999999999987 888999997643
Q ss_pred hhhh----------------hhh-hHHHHHHHHHHHHhC-CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc
Q 014712 239 VQKY----------------VGE-GARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (420)
Q Consensus 239 ~~~~----------------~g~-~~~~v~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (420)
...+ .+. .......++...... .|.+|+|||++.+.... +. ..+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~---~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------ND---DILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CS---THHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cC---HHHHHHhhchh
Confidence 2110 011 223344444444443 48899999999985321 12 23444444443
Q ss_pred CCcCCCCeEEEEEeCCC---CCCCccccCcCccc-EEEEccCCCHHHHHHHHHHHHhc----CCCCCCccHHHHHhhCC-
Q 014712 301 GFDARGNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLSRLCP- 371 (420)
Q Consensus 301 ~~~~~~~v~vI~ttn~~---~~ld~al~r~gRfd-~~i~~~~Pd~~~R~~Il~~~~~~----~~~~~~v~l~~la~~t~- 371 (420)
.. ...++.+|++||.+ ..+++.+.+ ||. +.+.|++++.++..++++.++.. ..+. +..++.++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 233 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAAR 233 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHH
Confidence 32 35578899999987 467788877 664 58999999999999999988753 2222 223566777666
Q ss_pred --CCcc
Q 014712 372 --NSTG 375 (420)
Q Consensus 372 --g~sg 375 (420)
|...
T Consensus 234 ~~G~~r 239 (386)
T 2qby_A 234 EHGDAR 239 (386)
T ss_dssp TTCCHH
T ss_pred hcCCHH
Confidence 6544
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.57 E-value=2.4e-14 Score=135.68 Aligned_cols=161 Identities=21% Similarity=0.211 Sum_probs=101.0
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC---CcEEEEecchhhhh
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQK 241 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l~~~ 241 (420)
.+|++++|.+..++.+.+.+.... ..+.+++|+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 478889999999999988876532 2356899999999999999999999874 68999999876432
Q ss_pred hh-----hhhHHH-------HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC------Cc
Q 014712 242 YV-----GEGARM-------VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG------FD 303 (420)
Q Consensus 242 ~~-----g~~~~~-------v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~------~~ 303 (420)
.. |..... ....+.. ...++|||||+|.+ +...+..++++++...- ..
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCccc
Confidence 11 110000 0112222 23569999999998 56778888888875310 01
Q ss_pred CCCCeEEEEEeCCC-------CCCCccccCcCcccE-EEEccCCCH--HHHHHHHHHHH
Q 014712 304 ARGNIKVLMATNRP-------DTLDPALLRPGRLDR-KVEFGLPDL--ESRTQIFKIHT 352 (420)
Q Consensus 304 ~~~~v~vI~ttn~~-------~~ld~al~r~gRfd~-~i~~~~Pd~--~~R~~Il~~~~ 352 (420)
...++.+|+|||.+ ..+.++|.+ ||.. .+.+|+... ++...+++.++
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 12467899999984 246788887 8853 444444332 33344444443
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=1.6e-14 Score=143.47 Aligned_cols=184 Identities=13% Similarity=0.173 Sum_probs=125.9
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCC--cceeeCCCCChHHHHHHHHHHhc----CCcEEEEecchhh
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK--GVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELV 239 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~--~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~~l~ 239 (420)
.+++++|.++.++.+..++...... ..+. +++|+||||||||++++++++.+ +..++.++|....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 3367999999999999988753222 2334 79999999999999999999987 5778899876543
Q ss_pred hh--h-------h-------hh-hHHHHHHHHHHHH-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC
Q 014712 240 QK--Y-------V-------GE-GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (420)
Q Consensus 240 ~~--~-------~-------g~-~~~~v~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 301 (420)
.. . . +. .......+..... ...|.+|+|||+|.+ +...+..+..++..+..
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCC
Confidence 11 0 0 10 1122222222222 355889999999997 35555555555543220
Q ss_pred CcCCCCeEEEEEeCCC---CCCCccccCcCcccE-EEEccCCCHHHHHHHHHHHHhc----CCCCCCccHHHHHhhCCCC
Q 014712 302 FDARGNIKVLMATNRP---DTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLSRLCPNS 373 (420)
Q Consensus 302 ~~~~~~v~vI~ttn~~---~~ld~al~r~gRfd~-~i~~~~Pd~~~R~~Il~~~~~~----~~~~~~v~l~~la~~t~g~ 373 (420)
....++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.. ..+ .+..++.++..+.+.
T Consensus 155 -~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 155 -LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY-SEDILQMIADITGAQ 230 (389)
T ss_dssp -HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS-CHHHHHHHHHHHSBS
T ss_pred -CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHhhc
Confidence 001578999999987 677888877 7764 8999999999999999988764 122 233467788888443
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.53 E-value=2.3e-14 Score=123.74 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=84.6
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhh
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE 245 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~ 245 (420)
+++|.+..++.+.+.+.... ..+.++||+||||||||++|+++++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 47899999999998886522 345679999999999999999999976 77899 999876543
Q ss_pred hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 246 ~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
......|..+. .++|||||||.+ +...|..++.++.. ...++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcC
Confidence 22334555553 359999999998 56778888877732 24567899999974
No 76
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.53 E-value=6.6e-15 Score=126.97 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=86.4
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHH
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGAR 248 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~ 248 (420)
+++|.+++++.+++.+.... ..+.+++|+||||||||++|+++++... +|+.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 37899999999999887532 2356799999999999999999999888 99999998875433
Q ss_pred HHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 249 ~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
...+|..+. .++|||||+|.+ +.+.|..++++++... ..++.+|+|||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 344555543 469999999998 5677888888887643 4568899999865
No 77
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.50 E-value=2.2e-14 Score=164.46 Aligned_cols=155 Identities=19% Similarity=0.170 Sum_probs=112.2
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCC----------hhhhhh------cCCC----------CCCc--ceeeCCCCC
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLH----------PEKFVK------LGID----------PPKG--VLCYGPPGT 213 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~----------~~~~~~------~gi~----------~~~~--vLL~GppGt 213 (420)
.+.++|++++|+++.++.+.+.+.+|+.+ ++.|+. .|+. +|+| +++||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 45599999999999999999999999854 667766 4443 4555 999999999
Q ss_pred hHHHHHHHHHHhc---CCcEEEEecchhh------------hhhhhh----hHHHHHHHHHHHHhCCCcEEEecCccccc
Q 014712 214 GKTLLARAVANRT---DACFIRVIGSELV------------QKYVGE----GARMVRELFQMARSKKACIVFFDEVDAIG 274 (420)
Q Consensus 214 GKT~Lakala~~~---~~~~i~v~~~~l~------------~~~~g~----~~~~v~~~f~~a~~~~p~Il~iDEiD~l~ 274 (420)
|||+||++++.+. +.+.++++..+.. .+|+++ +++.++.+|..|+...||+||+|++|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999865 5566666655533 456667 89999999999999999999999999999
Q ss_pred CCcc---CCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 275 GARF---DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 275 ~~r~---~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
+.+. +.+.....-..+.+.++|.++++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 8843 211111234456688999999987777888777 77764
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.47 E-value=7.6e-14 Score=144.04 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=101.4
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecc-----hhhhh
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGS-----ELVQK 241 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~-----~l~~~ 241 (420)
.|+|.+..++.+..++.. +.++||+||||||||++|+++|+.++ .+|..+.+. ++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 388999999888776643 35899999999999999999999884 355555443 22222
Q ss_pred hhhhhHHHHHHHHHHHHhC---CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc----CCc-CCCCeEEEEE
Q 014712 242 YVGEGARMVRELFQMARSK---KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GFD-ARGNIKVLMA 313 (420)
Q Consensus 242 ~~g~~~~~v~~~f~~a~~~---~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~~-~~~~v~vI~t 313 (420)
+.+..... ...|..+..+ .++|||||||+.+ ++..+..+++++++-. |.. .....++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 21111111 1122222222 4679999999876 6788888888887521 111 1122346888
Q ss_pred eCCCCC---CCccccCcCcccEEEEccCCCH-HHHHHHHHHHH
Q 014712 314 TNRPDT---LDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHT 352 (420)
Q Consensus 314 tn~~~~---ld~al~r~gRfd~~i~~~~Pd~-~~R~~Il~~~~ 352 (420)
||.+.. +.+++++ ||...+.+++|+. +++..|++.+.
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 886432 3458888 9999999999987 77888887654
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.45 E-value=7.2e-13 Score=130.19 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=119.0
Q ss_pred ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc----------------------
Q 014712 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------------------- 229 (420)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~---------------------- 229 (420)
-+.+.++.+...+.. -..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 6 w~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 456677777777754 1345679999999999999999999987532
Q ss_pred --EEEEecchhhhhhhhhhHHHHHHHHHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc
Q 014712 230 --FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (420)
Q Consensus 230 --~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 303 (420)
+..+.+.+- ....+...++.++..+.. ..+.|++|||+|.+ +.+.++.++..+++
T Consensus 74 ~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~lEe----- 134 (334)
T 1a5t_A 74 PDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTLEE----- 134 (334)
T ss_dssp TTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHHTS-----
T ss_pred CCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHhcC-----
Confidence 233332100 001223456666666543 34679999999998 44555655555542
Q ss_pred CCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc
Q 014712 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP 379 (420)
Q Consensus 304 ~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~ 379 (420)
+..++++|++||.++.+.+++++ |+ ..+.|++|+.++..++++... .+ ++..+..++..+.|-.+..+.
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHH
Confidence 45678999999999999999999 87 679999999999998888765 23 233467788888886664444
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.45 E-value=1.8e-13 Score=132.92 Aligned_cols=156 Identities=22% Similarity=0.327 Sum_probs=104.1
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh--
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV-- 243 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~-- 243 (420)
+++|.+..++.+.+.+.... ..+.++||+||||||||++|+++++.. +.+|+.++|+.+.....
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 58899999999998887632 346689999999999999999999965 67899999987643221
Q ss_pred ---h--------hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC------CcCCC
Q 014712 244 ---G--------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG------FDARG 306 (420)
Q Consensus 244 ---g--------~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~------~~~~~ 306 (420)
| ... .....|..+. .++||||||+.+ +...|..++.+++...- .....
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEAD---GGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHHT---TSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhh-hhcCHHHhcC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 1 000 1122344443 359999999998 56778888888775321 01134
Q ss_pred CeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHH----HHHHHHHHh
Q 014712 307 NIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESR----TQIFKIHTR 353 (420)
Q Consensus 307 ~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R----~~Il~~~~~ 353 (420)
++.||+|||.. ..+++.|.. ||. .+.+..|...+| ..+++.++.
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHH
Confidence 68899999975 235566666 663 444445554444 345555543
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=1.7e-13 Score=144.78 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=103.1
Q ss_pred cccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE----ecchhhhhh--
Q 014712 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV----IGSELVQKY-- 242 (420)
Q Consensus 169 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v----~~~~l~~~~-- 242 (420)
.|.|++.+++.+.-.+... .+.......+....++||+||||||||+||+++|+.++..++.. ++..+....
T Consensus 296 ~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 4778887776664333221 00000001223344899999999999999999999887654432 112221111
Q ss_pred ---hhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc------CC--cCCCCeEEE
Q 014712 243 ---VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVL 311 (420)
Q Consensus 243 ---~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI 311 (420)
.|... .....+..| ..+|+||||||.+ +...+..+++++++-. |. ....++.||
T Consensus 374 ~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLA---DGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCS-EEECHHHHH---SSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccc-ccCCeeEec---CCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 11100 000122222 3469999999997 5667888888887522 11 123568899
Q ss_pred EEeCCCC-------------CCCccccCcCcccE-EEEccCCCHHHHHHHHHHHHhc
Q 014712 312 MATNRPD-------------TLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 312 ~ttn~~~-------------~ld~al~r~gRfd~-~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
+|||.+. .+++++++ |||. .+..+.|+.+ ...|.++.+..
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9999886 89999999 9985 5566778877 77787776643
No 82
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.42 E-value=8.6e-13 Score=108.06 Aligned_cols=102 Identities=24% Similarity=0.375 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEE
Q 014712 36 TSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAKFV 115 (420)
Q Consensus 36 ~~~~~le~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (420)
.+.++|+.++++++.+++.+. ++....+++|+.||+|+++++++ +++|+.+++++|+
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lk-------------------eel~~L~~~P~~Vg~v~e~~d~~----~~iVk~s~g~~~~ 63 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLE-------------------NEVARLRSPPLLVGVVSDILEDG----RVVVKSSTGPKFV 63 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHH-------------------HHHHHHHSCCEEEEEEEEECTTS----CEEEEETTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHhCCCceEEEEEEEecCC----EEEEEeCCCCEEE
Confidence 455666666666666665554 22233368999999999999864 5999999999999
Q ss_pred EecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCCcccccccc
Q 014712 116 VGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 160 (420)
Q Consensus 116 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (420)
|++...++..+|+||++|+++..++++...||+++||.++.|.++
T Consensus 64 V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 64 VNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp ECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC-------------
T ss_pred EEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEec
Confidence 999999999999999999999999999999999999999998775
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.39 E-value=1.2e-12 Score=116.64 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=85.9
Q ss_pred CCCCccccccc----cHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEE
Q 014712 162 KPDVTYNDVGG----CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRV 233 (420)
Q Consensus 162 ~~~~~~~~i~G----~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v 233 (420)
..+.+|+++.+ +..+++.+++++.. +.+.++.+++|+||+|||||||++++++.+ |..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45668888765 34445555555543 334457889999999999999999999876 6677778
Q ss_pred ecchhhhhhhhhhHHH-HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEE
Q 014712 234 IGSELVQKYVGEGARM-VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (420)
Q Consensus 234 ~~~~l~~~~~g~~~~~-v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 312 (420)
++.++........... ...++.. ...|.+|+|||++... .+...+..+.++++... ..+..+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii~ 138 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTII 138 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEEE
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEEE
Confidence 8777765432211100 0011221 2367899999998542 35667778888887653 23567888
Q ss_pred EeCCCC
Q 014712 313 ATNRPD 318 (420)
Q Consensus 313 ttn~~~ 318 (420)
|||.+.
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 998753
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=2.3e-12 Score=125.06 Aligned_cols=142 Identities=12% Similarity=0.169 Sum_probs=106.2
Q ss_pred ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc------CCcEEEEecchhhhhhhhh
Q 014712 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------DACFIRVIGSELVQKYVGE 245 (420)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~------~~~~i~v~~~~l~~~~~g~ 245 (420)
|++++++.|+..+.. | . +.++|||||||+|||++|+++|+.+ ...++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 667788888888875 1 1 3479999999999999999999863 346777765420 12
Q ss_pred hHHHHHHHHHHHHhC----CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 246 GARMVRELFQMARSK----KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 246 ~~~~v~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
+-..++.++..+... ...|+||||+|.+ +...++.|+..+++ +..++++|++|+.++.+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 334567777776532 3469999999998 45667777777663 467888999999999999
Q ss_pred ccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 322 ~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
+++++ | .+.|++|+.++..+.++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 78999999999888887776
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.21 E-value=7.1e-11 Score=118.11 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=118.2
Q ss_pred ccccccccHHHHHHHHHhh-hcccCChhhhhhcCCCCCCccee--eCCCCChHHHHHHHHHHhc---------CCcEEEE
Q 014712 166 TYNDVGGCKEQIEKMREVV-ELPMLHPEKFVKLGIDPPKGVLC--YGPPGTGKTLLARAVANRT---------DACFIRV 233 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i-~~~l~~~~~~~~~gi~~~~~vLL--~GppGtGKT~Lakala~~~---------~~~~i~v 233 (420)
..+.++|.+..++.|.+++ ......+ -..+..++| +||+|+|||+|++++++.+ +..++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3367999999999999988 5421110 023557999 9999999999999999875 4567888
Q ss_pred ecchhh------hhh---h-------hh-hHHHHHHHHHHHH-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHH
Q 014712 234 IGSELV------QKY---V-------GE-GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (420)
Q Consensus 234 ~~~~l~------~~~---~-------g~-~~~~v~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (420)
++.... ... . +. .......+..... ...|.+|+|||+|.+...+ ..+.+....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~-----~~~~~~l~~l~~~ 167 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP-----RIAAEDLYTLLRV 167 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT-----TSCHHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc-----CcchHHHHHHHHH
Confidence 864321 110 0 11 1122222222222 3568899999999985321 0123444444444
Q ss_pred HHHhcCCcCC--CCeEEEEEeCCCC---CCC---ccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCC---CCCccHH
Q 014712 296 VNQLDGFDAR--GNIKVLMATNRPD---TLD---PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC---ERDIRFE 364 (420)
Q Consensus 296 l~~l~~~~~~--~~v~vI~ttn~~~---~ld---~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~---~~~v~l~ 364 (420)
+..+. ... .++.+|++|+.++ .++ +.+.+ ++...+.+++++.++..+++..++..... ..+....
T Consensus 168 ~~~~~--~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 168 HEEIP--SRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp HHHSC--CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHhcc--cCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 44331 012 5788998988664 233 55556 55556999999999999999877653211 1223466
Q ss_pred HHHhhCC
Q 014712 365 LLSRLCP 371 (420)
Q Consensus 365 ~la~~t~ 371 (420)
.++..+.
T Consensus 244 ~i~~~~~ 250 (412)
T 1w5s_A 244 LISDVYG 250 (412)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7888888
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.20 E-value=5.6e-11 Score=141.93 Aligned_cols=139 Identities=21% Similarity=0.368 Sum_probs=98.4
Q ss_pred CCCcceeeCCCCChHHHHHHH-HHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHH---------------hCCCcE
Q 014712 201 PPKGVLCYGPPGTGKTLLARA-VANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR---------------SKKACI 264 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Laka-la~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~---------------~~~p~I 264 (420)
.++++||+||||||||++|+. ++...+..++.++++.... ...+...+.... .+.++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 357999999999999999955 4545577788888765532 122333333221 123479
Q ss_pred EEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCC--------CCeEEEEEeCCCC-----CCCccccCcCccc
Q 014712 265 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR--------GNIKVLMATNRPD-----TLDPALLRPGRLD 331 (420)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~--------~~v~vI~ttn~~~-----~ld~al~r~gRfd 331 (420)
|||||++.....+. +.......+.++++. .++... .++.+|+|+|.+. .++++++| ||
T Consensus 1340 lFiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred EEeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 99999997544332 234566677777653 232211 3589999999994 89999999 99
Q ss_pred EEEEccCCCHHHHHHHHHHHHhc
Q 014712 332 RKVEFGLPDLESRTQIFKIHTRT 354 (420)
Q Consensus 332 ~~i~~~~Pd~~~R~~Il~~~~~~ 354 (420)
..+.++.|+.+++..|+..+++.
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999988743
No 87
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.18 E-value=1.1e-10 Score=123.45 Aligned_cols=54 Identities=30% Similarity=0.452 Sum_probs=46.7
Q ss_pred cccCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 159 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
....++..|++++|.+.+++.+...+.. +.+++|+||||||||++|+++|+.+.
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3457788999999999999988888764 35899999999999999999999774
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.17 E-value=2.1e-11 Score=105.85 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=70.1
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r 277 (420)
+...++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 45679999999999999999999976 666888888776543 112357899999998862
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC-CCCCC--ccccCcCcccE
Q 014712 278 FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLD--PALLRPGRLDR 332 (420)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~-~~~ld--~al~r~gRfd~ 332 (420)
... +..+.++++.+.. .+...+|+|||. |..+. +.+.+ |+..
T Consensus 97 -------~~~-~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~ 141 (149)
T 2kjq_A 97 -------NEE-QALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAY 141 (149)
T ss_dssp -------SHH-HHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGG
T ss_pred -------hHH-HHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhc
Confidence 222 7778888876541 233336667774 44333 67766 5543
No 89
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.14 E-value=1.8e-09 Score=105.06 Aligned_cols=186 Identities=22% Similarity=0.219 Sum_probs=117.1
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh--
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-- 239 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~-- 239 (420)
.|......++|.+..++.|.+++.. | ..++|+||+|+|||+|++.+++..+ ++++++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~ 68 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAE 68 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccc
Confidence 3444556689999999999998864 1 5799999999999999999999876 6666654331
Q ss_pred ----------hhh---h-----------------h--------hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCC
Q 014712 240 ----------QKY---V-----------------G--------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 281 (420)
Q Consensus 240 ----------~~~---~-----------------g--------~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~ 281 (420)
... . + .....+..+...+....|.+|+|||++.+....
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~---- 144 (350)
T 2qen_A 69 RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG---- 144 (350)
T ss_dssp TTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----
T ss_pred ccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----
Confidence 000 0 0 001122222222222248899999999984310
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC---------CCCccccCcCcccEEEEccCCCHHHHHHHHHHHH
Q 014712 282 VGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (420)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~---------~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~ 352 (420)
...+......+..+++. ..++.+|+|++... .....+. ||+...+.+++.+.++-.+++...+
T Consensus 145 ~~~~~~~~~~L~~~~~~------~~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 145 SRGGKELLALFAYAYDS------LPNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp TTTTHHHHHHHHHHHHH------CTTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHh------cCCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHH
Confidence 00123444444444443 24677887776431 1111222 3666789999999999999998877
Q ss_pred hcCCCC-CCccHHHHHhhCCCCccc
Q 014712 353 RTMNCE-RDIRFELLSRLCPNSTGK 376 (420)
Q Consensus 353 ~~~~~~-~~v~l~~la~~t~g~sga 376 (420)
...+.. .......+...|.|+...
T Consensus 217 ~~~~~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 217 REVNLDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp HTTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred HHcCCCCCHHHHHHHHHHhCCCHHH
Confidence 554432 233467888889998863
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.11 E-value=1.5e-10 Score=104.65 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=62.5
Q ss_pred CCCccccccccHH----HHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 163 PDVTYNDVGGCKE----QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 163 ~~~~~~~i~G~~~----~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
...+|+++.+.+. +++.++.++..... ...+.+++|+||||||||+||+++++.+ +.+++.+++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP---------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 3557888776542 44445555543110 0124789999999999999999999976 678888888
Q ss_pred chhhhhhhhhh-HHHHHHHHHHHHhCCCcEEEecCcccc
Q 014712 236 SELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAI 273 (420)
Q Consensus 236 ~~l~~~~~g~~-~~~v~~~f~~a~~~~p~Il~iDEiD~l 273 (420)
+++........ ...+..++.... .+.+|+|||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 87655432211 001122233222 2459999999775
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=2.8e-09 Score=103.94 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=116.9
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh--
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-- 239 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~-- 239 (420)
.+......++|.++.++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++++++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 69 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER 69 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTC
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccc
Confidence 344455678999999999988 532 3799999999999999999999887777888765420
Q ss_pred -----hhhhhh---------------------------------------hHHHHHHHHHHHHhC--CCcEEEecCcccc
Q 014712 240 -----QKYVGE---------------------------------------GARMVRELFQMARSK--KACIVFFDEVDAI 273 (420)
Q Consensus 240 -----~~~~g~---------------------------------------~~~~v~~~f~~a~~~--~p~Il~iDEiD~l 273 (420)
..+... ....+..++...... .|.+|+|||++.+
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~ 149 (357)
T 2fna_A 70 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL 149 (357)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHh
Confidence 000000 011233444443332 3889999999998
Q ss_pred cCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC---------CccccCcCcccEEEEccCCCHHHH
Q 014712 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL---------DPALLRPGRLDRKVEFGLPDLESR 344 (420)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l---------d~al~r~gRfd~~i~~~~Pd~~~R 344 (420)
.... +......+..+.+. ..++.+|+|++....+ ...+ .||+...+.+++.+.++.
T Consensus 150 ~~~~-------~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~ 214 (357)
T 2fna_A 150 VKLR-------GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEA 214 (357)
T ss_dssp GGCT-------TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHH
T ss_pred hccC-------chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHH
Confidence 5310 11223334344332 2367788887753211 1122 236667899999999999
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHhhCCCCccc
Q 014712 345 TQIFKIHTRTMNCERDIRFELLSRLCPNSTGK 376 (420)
Q Consensus 345 ~~Il~~~~~~~~~~~~v~l~~la~~t~g~sga 376 (420)
.+++...+...+...+ +...+...|.|++..
T Consensus 215 ~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~~ 245 (357)
T 2fna_A 215 IEFLRRGFQEADIDFK-DYEVVYEKIGGIPGW 245 (357)
T ss_dssp HHHHHHHHHHHTCCCC-CHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHcCCCCC-cHHHHHHHhCCCHHH
Confidence 9999887754444332 238888999998874
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.98 E-value=1.1e-09 Score=109.70 Aligned_cols=180 Identities=20% Similarity=0.274 Sum_probs=112.8
Q ss_pred cccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh
Q 014712 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV 243 (420)
Q Consensus 167 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~~ 243 (420)
+..+.|.+..++.+.+.+.... ....+++++|++|||||++|++++... +.+|+.++|..+.....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 4567888888888887776511 234578999999999999999999865 47899999987643211
Q ss_pred -------------hhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhc-----CC-cC
Q 014712 244 -------------GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GF-DA 304 (420)
Q Consensus 244 -------------g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-----~~-~~ 304 (420)
|.... ....|..|.. ++||||||+.+ +.+.|..++++++.-. +. ..
T Consensus 205 ~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 11000 1123444433 59999999998 7889999999998632 11 01
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHHHH----HHHHHHHh----cCCCC-CCccHHHHHh
Q 014712 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRT----QIFKIHTR----TMNCE-RDIRFELLSR 368 (420)
Q Consensus 305 ~~~v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~R~----~Il~~~~~----~~~~~-~~v~l~~la~ 368 (420)
..++.||+|||.. ..+.+.|.. |+ ..+.+..|...+|. .++..+++ +++.. ..++-+.+..
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYY--RL-GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHH--hh-cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2368899999964 223333333 33 13445556665553 34444443 33332 2355555655
Q ss_pred hC-CCCcc
Q 014712 369 LC-PNSTG 375 (420)
Q Consensus 369 ~t-~g~sg 375 (420)
+. ..|+|
T Consensus 347 l~~~~wpG 354 (387)
T 1ny5_A 347 LLSYPWYG 354 (387)
T ss_dssp HHHSCCTT
T ss_pred HHhCCCCc
Confidence 54 56776
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.97 E-value=1.5e-10 Score=112.08 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=71.4
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcCCc--EEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccC
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~~~--~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~ 275 (420)
|+.++..++|+||||||||+||.++|...+.+ |+.....+.+..+....+..+..++....... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 45556678999999999999999999875444 55542233333333444555555666555544 999999999865
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccc
Q 014712 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPAL 324 (420)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al 324 (420)
...+.+ ......+.+.+++..+.++....++.+|+++| +...++++
T Consensus 197 ~~~~~s--~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNT--TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccc--ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 432211 00111234445555554433345678888888 55555543
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.91 E-value=1.1e-09 Score=106.42 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=72.7
Q ss_pred CCccccccccH----HHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014712 164 DVTYNDVGGCK----EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (420)
Q Consensus 164 ~~~~~~i~G~~----~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~ 235 (420)
+.+|+++.+.. .++..+.+++..+ +-.++.+++||||||||||+||+++|+.+ +.+++.+++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY----------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC----------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc----------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 45788876533 2344444555431 11135789999999999999999999865 478888888
Q ss_pred chhhhhhhhhh-HHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHH-HHHHHHHHhcCCcCCCCeEEEEE
Q 014712 236 SELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR-TMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 236 ~~l~~~~~g~~-~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~-~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
+++........ .......+... ..+.+|||||++.... +...+. .+..+++... ..+..+|+|
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~~~---------~~~~~~~ll~~ll~~r~----~~~~~~Iit 254 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAEQA---------TSWVRDEVLQVILQYRM----LEELPTFFT 254 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC---------------CTTTTHHHHHHHHH----HHTCCEEEE
T ss_pred HHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC---------CHHHHHHHHHHHHHHHH----HCCCcEEEE
Confidence 87765433211 11111122222 2346999999976422 111222 2334555321 123468889
Q ss_pred eCCC
Q 014712 314 TNRP 317 (420)
Q Consensus 314 tn~~ 317 (420)
||.+
T Consensus 255 SN~~ 258 (308)
T 2qgz_A 255 SNYS 258 (308)
T ss_dssp ESSC
T ss_pred CCCC
Confidence 9864
No 95
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=5.8e-09 Score=81.14 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=61.0
Q ss_pred hHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCC
Q 014712 76 DKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPP 148 (420)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~ 148 (420)
++....+++|+.||+++++++++ +++|+.+++++|+|++...++...|+||++|+++..++++...||.
T Consensus 9 eei~~L~~~P~~vG~v~e~~dd~----~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 9 RELDRMRVPPLIVGTVVDKVGER----KVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HHHHHHHSCCEEEEEEEEEEETT----EEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred HHHHHhcCCCceEEEEEEEcCCC----EEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 33344468999999999999864 6999999999999999999999999999999999999999999883
No 96
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.81 E-value=9.2e-09 Score=102.27 Aligned_cols=180 Identities=21% Similarity=0.301 Sum_probs=108.7
Q ss_pred ccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcCC--cEEEEecchhhhhhh--
Q 014712 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKYV-- 243 (420)
Q Consensus 168 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l~~~~~-- 243 (420)
..++|.+.....+.+.+.... .....++++|++||||+++|++++...+. .|+.++|..+-....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 357888888888877765421 23456999999999999999999987643 399999986533211
Q ss_pred ---hhhH-------HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcC--CcC----CCC
Q 014712 244 ---GEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FDA----RGN 307 (420)
Q Consensus 244 ---g~~~-------~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~~----~~~ 307 (420)
|... ..-...|..|.. .+||||||+.+ +...|..|+++++.-.- ... .-+
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred HhcCccccccCCcccccCChHhhcCC---CeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 1000 001123444433 48999999998 78899999999986321 111 125
Q ss_pred eEEEEEeCCC-------CCCCccccCcCcccEEEEccCCCHHH----HHHHHHHHHhc----CCCC-CCccHHHHHhhC-
Q 014712 308 IKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLES----RTQIFKIHTRT----MNCE-RDIRFELLSRLC- 370 (420)
Q Consensus 308 v~vI~ttn~~-------~~ld~al~r~gRfd~~i~~~~Pd~~~----R~~Il~~~~~~----~~~~-~~v~l~~la~~t- 370 (420)
+.+|++||.. ..+.+.|.. |+. .+.+..|...+ ...++..++++ .+.. ..++-+.+..+.
T Consensus 264 ~rii~at~~~l~~~v~~g~fr~dL~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 264 IRVISATNKNLEEEIKKGNFREDLYY--RLS-VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHH--HHT-SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHH--HhC-CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 7899999963 223334443 332 33444444444 34455555533 3322 235555555553
Q ss_pred CCCcc
Q 014712 371 PNSTG 375 (420)
Q Consensus 371 ~g~sg 375 (420)
..|+|
T Consensus 341 ~~wpG 345 (368)
T 3dzd_A 341 QEWKG 345 (368)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 35666
No 97
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.75 E-value=6.8e-09 Score=79.69 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=55.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHHH
Q 014712 337 GLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVYR 400 (420)
Q Consensus 337 ~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~~ 400 (420)
|+|+.++|.+||+.|++++++..++|++.||..|+|||||||. .+......+..||..|+..+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998899999999999999999998 233455677788888886654
No 98
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.74 E-value=6.7e-09 Score=103.40 Aligned_cols=120 Identities=21% Similarity=0.226 Sum_probs=78.4
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccC-
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG- 275 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~- 275 (420)
++++++..++|+||||+|||||++++++..+..++.+..+.-.. ...+. ......++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~------~~~lg------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRL------NFELG------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTH------HHHHG------GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhH------HHHHH------HhcchhHHHHHHHHHHHHH
Confidence 47888899999999999999999999998877765543332110 00111 112345789999999865
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccC
Q 014712 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~ 338 (420)
.|.-. .+. ... ....+.+.++| .+.|+++||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~--~~~-~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SGQ-GIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CCS-HHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--ccC-cch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22110 011 111 22333444443 45688899999999 89999999988766644
No 99
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.70 E-value=8.1e-09 Score=80.85 Aligned_cols=65 Identities=26% Similarity=0.419 Sum_probs=55.3
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHHH
Q 014712 336 FGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVYR 400 (420)
Q Consensus 336 ~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~~ 400 (420)
-.+||.++|.+||+.+++++++..++|++.||+.|+|||||||. .+.....++.+||..|+..++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999998899999999999999999999 233345677788888886654
No 100
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.70 E-value=1.2e-08 Score=92.58 Aligned_cols=125 Identities=22% Similarity=0.207 Sum_probs=78.3
Q ss_pred cceeeCCCCChHHHHHHHHHHh--------cC-CcEEEEecchhhhhhh-------------hh--hHHHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR--------TD-ACFIRVIGSELVQKYV-------------GE--GARMVRELFQMARS 259 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~--------~~-~~~i~v~~~~l~~~~~-------------g~--~~~~v~~~f~~a~~ 259 (420)
.++++|+||||||++|.+.+.. .| .+++..++.++..... ++ ....+..++.. ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-PE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-GG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-cc
Confidence 5789999999999999886433 34 5555566555432221 01 11222222211 23
Q ss_pred CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCC
Q 014712 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 339 (420)
Q Consensus 260 ~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~P 339 (420)
+..+||+|||++.+.+.+.+.. .. . .++..+.. ....++-||++|+.+..|+.+++. |++..+.+..|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~--e~---~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS--KI---P----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC--CC---C----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccc--hh---H----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 4467999999999976542211 11 1 23334332 234567789999999999999988 99999999876
Q ss_pred CH
Q 014712 340 DL 341 (420)
Q Consensus 340 d~ 341 (420)
..
T Consensus 154 ~~ 155 (199)
T 2r2a_A 154 KM 155 (199)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.70 E-value=1.1e-07 Score=114.10 Aligned_cols=126 Identities=17% Similarity=0.264 Sum_probs=95.4
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 281 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~ 281 (420)
..++++.||+|||||.+++++|+.+|.+++.++|++-... ..+..+|.-+... +++++|||++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhc--------
Confidence 4578999999999999999999999999999999875432 2335556555443 359999999997
Q ss_pred CCCCHHHHHHHHHHHHHhcC---------------CcCCCCeEEEEEeCC----CCCCCccccCcCcccEEEEccCCCHH
Q 014712 282 VGGDNEVQRTMLEIVNQLDG---------------FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 342 (420)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l~~---------------~~~~~~v~vI~ttn~----~~~ld~al~r~gRfd~~i~~~~Pd~~ 342 (420)
+.++...+.+.+..+.. +.-..+..|++|.|. ...|+.++++ || +.+.+..||.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 67777777555543211 122345678888883 4678999998 99 88999999998
Q ss_pred HHHHHH
Q 014712 343 SRTQIF 348 (420)
Q Consensus 343 ~R~~Il 348 (420)
...+|+
T Consensus 784 ~i~ei~ 789 (2695)
T 4akg_A 784 TIAEMI 789 (2695)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877775
No 102
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.66 E-value=7e-08 Score=112.40 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=82.1
Q ss_pred ChhhhhhcC---CCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhh----hhhhh------------hhH
Q 014712 190 HPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV----QKYVG------------EGA 247 (420)
Q Consensus 190 ~~~~~~~~g---i~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~----~~~~g------------~~~ 247 (420)
.+++-.-+| +.++.+++||||||||||+||.+++.++ |....+++..+.. ....| ..+
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E 1491 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 1491 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHH
Confidence 344444455 8899999999999999999999998764 5556666655332 11122 345
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccccCCc---cCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEE
Q 014712 248 RMVRELFQMARSKKACIVFFDEVDAIGGAR---FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (420)
Q Consensus 248 ~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r---~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~t 313 (420)
..++.++..++..+|++||||+++.+.+.+ ++.+.+......+.+.++|.++.++....++.||++
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 677778888888999999999999887642 111111111134566677777766655667655544
No 103
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.62 E-value=1.8e-08 Score=91.37 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=27.4
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
++..++++||||||||||++|.++|+.+...++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 444567999999999999999999998865443
No 104
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.56 E-value=4.8e-08 Score=98.86 Aligned_cols=147 Identities=17% Similarity=0.097 Sum_probs=84.5
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHH-HHhcCCcEEEEecc-----hhhhhhh
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAV-ANRTDACFIRVIGS-----ELVQKYV 243 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakal-a~~~~~~~i~v~~~-----~l~~~~~ 243 (420)
|.|++.++..|.-.+...-.. +...-++||.|+||| ||++|+++ +.-+.... ++.+. .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEE
Confidence 666666655554444321000 112237999999999 99999999 66543322 22221 0110000
Q ss_pred hh-hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHh----cCCcCCCCeEEEEEeCCCC
Q 014712 244 GE-GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL----DGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 244 g~-~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l----~~~~~~~~v~vI~ttn~~~ 318 (420)
+. +-..-...+..|. ..++|+|||+.+ +...+..|.+.+++- .|..-..++.||+|+|...
T Consensus 285 ~~tG~~~~~G~l~LAd---gGvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 285 EDRGWALRAGAAVLAD---GGILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp ESSSEEEEECHHHHTT---TSEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred cCCCcccCCCeeEEcC---CCeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 00 0000011222332 249999999997 688899999998862 2222245788999999865
Q ss_pred -----------CCCccccCcCcccEEEE-ccCCCHH
Q 014712 319 -----------TLDPALLRPGRLDRKVE-FGLPDLE 342 (420)
Q Consensus 319 -----------~ld~al~r~gRfd~~i~-~~~Pd~~ 342 (420)
.|++++++ |||..+. +..|+.+
T Consensus 351 ~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp --CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred ccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 78889999 9987554 4566544
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.48 E-value=4.9e-07 Score=109.22 Aligned_cols=138 Identities=23% Similarity=0.306 Sum_probs=92.4
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc-CCcEEEEecchhhhhhhhhhHHHHHHHHHHH----H------------hCCCcE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSELVQKYVGEGARMVRELFQMA----R------------SKKACI 264 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~-~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a----~------------~~~p~I 264 (420)
.+++||+||||||||.+++.....+ +.+++.++++.-.. ...+...+... + .++..|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 5689999999999998776655444 66677788765432 22233333321 0 123359
Q ss_pred EEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCc-------CCCCeEEEEEeCCC-----CCCCccccCcCcccE
Q 014712 265 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-------ARGNIKVLMATNRP-----DTLDPALLRPGRLDR 332 (420)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-------~~~~v~vI~ttn~~-----~~ld~al~r~gRfd~ 332 (420)
+||||++.-.... .+.......+.++++.-.-++ ...++.+|+|+|.| ..++++++| || .
T Consensus 1378 lFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~ 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-P 1449 (3245)
T ss_dssp EEETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-C
T ss_pred EEecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-e
Confidence 9999998643222 234456677777776522111 12468899999987 468999999 99 6
Q ss_pred EEEccCCCHHHHHHHHHHHHh
Q 014712 333 KVEFGLPDLESRTQIFKIHTR 353 (420)
Q Consensus 333 ~i~~~~Pd~~~R~~Il~~~~~ 353 (420)
.+.++.|+.++...|+..++.
T Consensus 1450 vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 699999999999999776543
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.45 E-value=6.9e-07 Score=79.46 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=68.6
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh---------------------------------hhhhhhh--hHH
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL---------------------------------VQKYVGE--GAR 248 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l---------------------------------~~~~~g~--~~~ 248 (420)
.+.|.||+|+|||||++.+++.++..+.-....+. ...+... +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 47899999999999999999987544332211111 0111111 122
Q ss_pred HHHHHHHHH-----HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC--C
Q 014712 249 MVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL--D 321 (420)
Q Consensus 249 ~v~~~f~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l--d 321 (420)
..+-.+..+ ....|.++++||++-.. +.+...+..+.+++.. .+..+|++++..+.. -
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~--------~ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~~~~ 146 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKME--------LFSKKFRDLVRQIMHD-------PNVNVVATIPIRDVHPLV 146 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--------GGCHHHHHHHHHHHTC-------TTSEEEEECCSSCCSHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcc--------cCCHHHHHHHHHHHhc-------CCCeEEEEEccCCCchHH
Confidence 233344443 56789999999976432 2356677777776643 244567777532222 2
Q ss_pred ccccCcCcc-cEEEEccCCCH
Q 014712 322 PALLRPGRL-DRKVEFGLPDL 341 (420)
Q Consensus 322 ~al~r~gRf-d~~i~~~~Pd~ 341 (420)
..+.+ |- .+++++...+.
T Consensus 147 ~~i~~--r~~~~i~~~~~~~r 165 (178)
T 1ye8_A 147 KEIRR--LPGAVLIELTPENR 165 (178)
T ss_dssp HHHHT--CTTCEEEECCTTTT
T ss_pred HHHHh--cCCcEEEEecCcCH
Confidence 34444 32 15677766553
No 107
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.44 E-value=2.7e-07 Score=87.14 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~ 280 (420)
+.++++||||||||||++|+++|+.+... ..++.+. ..+ .|. ......|++.||.....
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~--~~f----------~l~--~~~~k~i~l~Ee~~~~~------ 161 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTN--ENF----------PFN--DCVDKMVIWWEEGKMTA------ 161 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTC--SSC----------TTG--GGSSCSEEEECSCCEET------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeeccc--ccc----------ccc--cccccEEEEeccccchh------
Confidence 34579999999999999999999976442 2222211 000 111 11233477777766541
Q ss_pred CCCCCHHHHHHHHHHHH----HhcCC----cCCCCeEEEEEeCC-C----------CCCCccccCcCcccEEEEcc----
Q 014712 281 GVGGDNEVQRTMLEIVN----QLDGF----DARGNIKVLMATNR-P----------DTLDPALLRPGRLDRKVEFG---- 337 (420)
Q Consensus 281 ~~~~~~~~~~~l~~ll~----~l~~~----~~~~~v~vI~ttn~-~----------~~ld~al~r~gRfd~~i~~~---- 337 (420)
+.+..+..++. .++.- ..-....+|+|||. + +...+.|.+ |+ ..+.|+
T Consensus 162 ------d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p 232 (267)
T 1u0j_A 162 ------KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLD 232 (267)
T ss_dssp ------TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCC
T ss_pred ------HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCC
Confidence 12333444442 01100 01145678999996 2 134467777 77 677776
Q ss_pred ----CCCHHHHHHHHHH
Q 014712 338 ----LPDLESRTQIFKI 350 (420)
Q Consensus 338 ----~Pd~~~R~~Il~~ 350 (420)
..+.++-...|+.
T Consensus 233 ~~~~~lt~~~~~~f~~w 249 (267)
T 1u0j_A 233 HDFGKVTKQEVKDFFRW 249 (267)
T ss_dssp TTSCCCCHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHH
Confidence 4566777777763
No 108
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.43 E-value=1.1e-07 Score=74.57 Aligned_cols=64 Identities=45% Similarity=0.691 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHHHhhc
Q 014712 340 DLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVYRSYI 403 (420)
Q Consensus 340 d~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~~~~~ 403 (420)
|.++|.+||+.|++++++..++|++.||..|+|||||||. .+......+..||..|+..+..-.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 75 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCc
Confidence 5678999999999999999999999999999999999998 233345678899999997765444
No 109
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.42 E-value=1.9e-07 Score=72.40 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHHHhhcc
Q 014712 340 DLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVYRSYIN 404 (420)
Q Consensus 340 d~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~~~~~~ 404 (420)
|.++|.+||+.|++++++..++|++.||..|+|||||||. .+......+..||..|+..++....
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 6789999999999999998899999999999999999999 2333456788999999987765544
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.35 E-value=1.5e-06 Score=80.30 Aligned_cols=129 Identities=17% Similarity=0.226 Sum_probs=74.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHH--Hh--cCCcEEEEecchhhhhh------hh-----------------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVA--NR--TDACFIRVIGSELVQKY------VG----------------------- 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala--~~--~~~~~i~v~~~~l~~~~------~g----------------------- 244 (420)
|++++..+.|.||+|+|||||+++++ .. .+...+.+......... .+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 56778889999999999999999998 32 34444444432211000 00
Q ss_pred -------------hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEE
Q 014712 245 -------------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (420)
Q Consensus 245 -------------~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 311 (420)
........+........|.+|+|||.-....... ........+..++..+. ..++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEE
Confidence 0111222333344557899999999877653111 12344555677776663 2356788
Q ss_pred EEeCCCCCCC-----ccccCcCcc-cEEEEcc
Q 014712 312 MATNRPDTLD-----PALLRPGRL-DRKVEFG 337 (420)
Q Consensus 312 ~ttn~~~~ld-----~al~r~gRf-d~~i~~~ 337 (420)
++|+..+... +.+.. .+ |+++.+.
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EEECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EEECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 8998766542 22222 45 7777765
No 111
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.33 E-value=2e-06 Score=78.33 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=64.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh----hh--hh------------------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----KY--VG------------------------ 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~----~~--~g------------------------ 244 (420)
|+.++..++|+||+|+|||+|++.++... +..++.++...... .. .+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 46677789999999999999999999643 45555554322110 00 00
Q ss_pred ------hhHHHHHHHHHHHHhCCCc--EEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 245 ------EGARMVRELFQMARSKKAC--IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 245 ------~~~~~v~~~f~~a~~~~p~--Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
........+...+....|. +|+|||+..+... +......+...+..+. ...++.||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~--------d~~~~~~~~~~l~~~~---~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD--------KPAMARKISYYLKRVL---NKWNFTIYATSQY 167 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS--------CGGGHHHHHHHHHHHH---HHTTEEEEEEEC-
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC--------CHHHHHHHHHHHHHHH---HhCCCeEEEEecc
Confidence 1122233344444556888 9999999987431 2223344444444432 1346788888886
Q ss_pred C
Q 014712 317 P 317 (420)
Q Consensus 317 ~ 317 (420)
.
T Consensus 168 ~ 168 (235)
T 2w0m_A 168 A 168 (235)
T ss_dssp -
T ss_pred C
Confidence 5
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.26 E-value=2.8e-06 Score=78.16 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=63.5
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh--c-------CCcEEEEecchh--hh---hh---hh----------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR--T-------DACFIRVIGSEL--VQ---KY---VG---------------- 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~--~-------~~~~i~v~~~~l--~~---~~---~g---------------- 244 (420)
|+.++..++|+||||+|||+|++.++.. . +...+++++... .. .. .+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5677788999999999999999999984 2 456777776541 00 00 00
Q ss_pred hhH---HHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 245 EGA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 245 ~~~---~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
... ..+..+...+....|.+|+||++..+.....+.. +...+.++.+..++..+..+....++.||++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 011 1122233444557899999999988764321100 000111222333333332222233667888877544
No 113
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.25 E-value=4.5e-06 Score=100.99 Aligned_cols=125 Identities=18% Similarity=0.298 Sum_probs=92.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhhhhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV 282 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~ 282 (420)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-... ..+..+|.-+... .+..+||||+++
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 356899999999999999999999999999999875432 2334455444332 348899999998
Q ss_pred CCCHHHHHHHHHHHHHhc--------------C--CcCCCCeEEEEEeCC----CCCCCccccCcCcccEEEEccCCCHH
Q 014712 283 GGDNEVQRTMLEIVNQLD--------------G--FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 342 (420)
Q Consensus 283 ~~~~~~~~~l~~ll~~l~--------------~--~~~~~~v~vI~ttn~----~~~ld~al~r~gRfd~~i~~~~Pd~~ 342 (420)
+.++...+.+.+..+. | +.-+.+..|++|.|. ...|+.+|+. || +.+.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 6777777766555321 1 122346778888883 4689999999 99 88999999998
Q ss_pred HHHHHH
Q 014712 343 SRTQIF 348 (420)
Q Consensus 343 ~R~~Il 348 (420)
...+|+
T Consensus 744 ~i~ei~ 749 (3245)
T 3vkg_A 744 MIAQVM 749 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766664
No 114
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.24 E-value=1.2e-06 Score=86.42 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=51.8
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh----hhh------------hhHHHHHHHHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YVG------------EGARMVRELFQMAR 258 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~----~~g------------~~~~~v~~~f~~a~ 258 (420)
|+.++..++|+||||+|||+||..++... +...++++....... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56777789999999999999999998653 566677765432111 111 11222222333344
Q ss_pred hCCCcEEEecCcccccC
Q 014712 259 SKKACIVFFDEVDAIGG 275 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~ 275 (420)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999874
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.23 E-value=1.7e-06 Score=85.23 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=70.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----------------hhhhHHHHHHHHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----------------VGEGARMVRELFQMAR 258 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~----------------~g~~~~~v~~~f~~a~ 258 (420)
|+.++..++|+||||+|||+|+..++..+ +...++++..+..... ....+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56677789999999999999999998864 5667777765422110 0112222322333334
Q ss_pred hCCCcEEEecCcccccC-CccCCCCCCC--HHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 259 SKKACIVFFDEVDAIGG-ARFDDGVGGD--NEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~-~r~~~~~~~~--~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
...+.+++||.+..+.+ ...+...+.. ....+.+.+++..+..+....++.||++..
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 57889999999998875 2222111111 123445555555554444455676776644
No 116
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=98.22 E-value=4.5e-06 Score=76.70 Aligned_cols=74 Identities=7% Similarity=0.043 Sum_probs=61.2
Q ss_pred chhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEEEeccceeeecCCCCCCCC
Q 014712 73 LVSDKQMMQEEQPLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152 (420)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~ 152 (420)
+..+..++ +++|+.+|+++++++++ .++|. +++.+|+|.++..++..+|+||++|+++ .++.++..||.+..-
T Consensus 87 LkeElerL-~sPPL~iGtvlev~dd~----~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~~G 159 (251)
T 3m9b_A 87 LREEVDRL-GQPPSGYGVLLATHDDD----TVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEAVG 159 (251)
T ss_dssp HHHHHHHH-HSCCEEEEEEEEECSSS----CEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCCCS
T ss_pred HHHHHHHh-cCCCceEEEEEEEcCCC----EEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCCcc
Confidence 44444444 79999999999998764 47887 5889999999999999999999999995 699999999876544
Q ss_pred c
Q 014712 153 S 153 (420)
Q Consensus 153 ~ 153 (420)
.
T Consensus 160 e 160 (251)
T 3m9b_A 160 E 160 (251)
T ss_dssp E
T ss_pred c
Confidence 3
No 117
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.21 E-value=1.4e-05 Score=83.57 Aligned_cols=170 Identities=13% Similarity=0.117 Sum_probs=96.0
Q ss_pred cccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHh-------cCCcEEEEecchh-
Q 014712 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR-------TDACFIRVIGSEL- 238 (420)
Q Consensus 167 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~-------~~~~~i~v~~~~l- 238 (420)
...++|.+..++.|.+.+... -...+.+.|+||+|+|||+||+.+++. .....+.++.+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 345899999999999988641 022456899999999999999999753 2223344433221
Q ss_pred ----hhhh------hh----------hhHHHHHHHHHHH-H-hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHH
Q 014712 239 ----VQKY------VG----------EGARMVRELFQMA-R-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (420)
Q Consensus 239 ----~~~~------~g----------~~~~~v~~~f~~a-~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (420)
.... .+ .....+...+... . ...|.+|+||+++.. . .+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------~-------~l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------W-------VL 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-------------H-------HH
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-------------H-------HH
Confidence 1111 00 0111112222221 2 236889999998642 1 12
Q ss_pred HHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEE-ccCCCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcc
Q 014712 297 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVE-FGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTG 375 (420)
Q Consensus 297 ~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~-~~~Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sg 375 (420)
..+ ..+..||+||........ . . +.. ..+. +...+.++-.++|..++..-..........|++.|.|.+-
T Consensus 252 ~~l-----~~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 252 KAF-----DSQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPL 322 (591)
T ss_dssp HTT-----CSSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHH
T ss_pred HHh-----cCCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcH
Confidence 222 335678888876432211 0 1 121 1222 2467888888899887743111112346788999999875
Q ss_pred c
Q 014712 376 K 376 (420)
Q Consensus 376 a 376 (420)
|
T Consensus 323 a 323 (591)
T 1z6t_A 323 V 323 (591)
T ss_dssp H
T ss_pred H
Confidence 3
No 118
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.20 E-value=2.1e-06 Score=77.81 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=33.6
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 237 (420)
|+.++..++|+||||+|||++++.+|...+...++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5777788999999999999999999986677777777654
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.20 E-value=4.1e-06 Score=82.92 Aligned_cols=119 Identities=20% Similarity=0.247 Sum_probs=68.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----h------------hhhHHHHHHHHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----V------------GEGARMVRELFQMAR 258 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~----~------------g~~~~~v~~~f~~a~ 258 (420)
|++++..++|+||||+|||+||..+|... +.+.++++........ . ...+..+..+-...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56677789999999999999999988753 5677777754322111 0 111222222223334
Q ss_pred hCCCcEEEecCcccccCCccCCCCCCCH---HHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 259 SKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
...+++|+||.+..+.....-.+..++. ...+.+.+++..+..+....++.||++...
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 5678999999999987422110000110 122345555555543334566777776543
No 120
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.17 E-value=5e-06 Score=81.24 Aligned_cols=144 Identities=11% Similarity=0.055 Sum_probs=91.5
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CC-cEEEEecchhhhhhhhhhHHHHHHHHHHH----HhCCCcEEEecCccc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DA-CFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDA 272 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~-~~i~v~~~~l~~~~~g~~~~~v~~~f~~a----~~~~p~Il~iDEiD~ 272 (420)
.+..+|||||+|.||++.++++++.+ +. ++..+... + ...++.++..+ ......|++|||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 34579999999999999999998865 22 22222111 0 01223333333 235567999999988
Q ss_pred -ccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC------CCCccccCcCcccEEEEccCCCHHHHH
Q 014712 273 -IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD------TLDPALLRPGRLDRKVEFGLPDLESRT 345 (420)
Q Consensus 273 -l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~------~ld~al~r~gRfd~~i~~~~Pd~~~R~ 345 (420)
+. ...+..+...++. +..++++|++|+.++ .+.+++.+ |+ ..+.|..++..+..
T Consensus 88 kl~-----------~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GPN-----------AAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CCC-----------TTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CCC-----------hHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 62 2345556555543 345666776666543 34567777 66 68899999999999
Q ss_pred HHHHHHHhcCCCC-CCccHHHHHhhCCC
Q 014712 346 QIFKIHTRTMNCE-RDIRFELLSRLCPN 372 (420)
Q Consensus 346 ~Il~~~~~~~~~~-~~v~l~~la~~t~g 372 (420)
..++..++..++. +...+..|+..+.|
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 8998888776654 22235566666665
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.13 E-value=2.5e-06 Score=99.53 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=82.7
Q ss_pred ccCChhhhhhc---CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----hh--------hhHH
Q 014712 187 PMLHPEKFVKL---GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----VG--------EGAR 248 (420)
Q Consensus 187 ~l~~~~~~~~~---gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~~----~g--------~~~~ 248 (420)
+...+++..-+ |+.++..++|+|+||+|||+||..+|..+ +.+++++++.+..... .| ..+.
T Consensus 714 ~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~ 793 (2050)
T 3cmu_A 714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 793 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCS
T ss_pred ecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCC
Confidence 33445566666 58899999999999999999999999865 4578888876554433 11 0111
Q ss_pred HHHHHHHHHHh----CCCcEEEecCcccccC-CccCCCCC-CC-HHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 249 MVRELFQMARS----KKACIVFFDEVDAIGG-ARFDDGVG-GD-NEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 249 ~v~~~f~~a~~----~~p~Il~iDEiD~l~~-~r~~~~~~-~~-~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+..++..++. ..|++||||.++.+.. .+.+...+ .. .-..+.+.+++..+..+....++.||++++-.
T Consensus 794 ~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~ 869 (2050)
T 3cmu_A 794 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred CHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 13344444433 6899999999999975 22111101 11 11234455666566555556788888877643
No 122
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.12 E-value=2.3e-05 Score=88.44 Aligned_cols=172 Identities=14% Similarity=0.120 Sum_probs=102.8
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc-------CCcEEEEecch
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSE 237 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~-------~~~~i~v~~~~ 237 (420)
.....++|.+..+++|.+.+... -..++.+.|+|+.|+|||+||+.+++.. ....+.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 34456899999999999988541 0234568899999999999999998752 22334454332
Q ss_pred h-----hhhh------h----------hhhHHHHHHHHHHHHhC--CCcEEEecCcccccCCccCCCCCCCHHHHHHHHH
Q 014712 238 L-----VQKY------V----------GEGARMVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 294 (420)
Q Consensus 238 l-----~~~~------~----------g~~~~~v~~~f~~a~~~--~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ 294 (420)
. .... . ......+...+...... ++.+|+||+++.. .
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-------------~------- 249 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-------------W------- 249 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-------------H-------
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-------------H-------
Confidence 1 0000 0 01112222233322233 3789999998753 1
Q ss_pred HHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccC-CCHHHHHHHHHHHHhcCCCCCCccHHHHHhhCCCC
Q 014712 295 IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL-PDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNS 373 (420)
Q Consensus 295 ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~-Pd~~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~ 373 (420)
++..+ ..+..||+||......... . .....+.++. .+.++-.++|..+.....-........|++.|.|.
T Consensus 250 ---~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 250 ---VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp ---HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred ---HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 12222 2345788898876533211 1 1234567775 78888889998877433222223467899999998
Q ss_pred ccc
Q 014712 374 TGK 376 (420)
Q Consensus 374 sga 376 (420)
+-|
T Consensus 321 PLa 323 (1249)
T 3sfz_A 321 PLV 323 (1249)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 123
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.10 E-value=4.8e-06 Score=82.13 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=51.7
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh----hhh-----------hhHHHHHHHHH-HHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YVG-----------EGARMVRELFQ-MAR 258 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~----~~g-----------~~~~~v~~~f~-~a~ 258 (420)
|++++..++|+|+||+|||+||..+|... +...++++....... ..| .....+..++. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56777889999999999999999998753 567777776332111 001 01122222332 234
Q ss_pred hCCCcEEEecCcccccC
Q 014712 259 SKKACIVFFDEVDAIGG 275 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~ 275 (420)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 57789999999999864
No 124
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.06 E-value=7.2e-06 Score=83.59 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=35.6
Q ss_pred CcccccccccCCCCcccccc-ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 152 PSVTMMTVEEKPDVTYNDVG-GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~-G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+..+..|++++.+.+|+++- ++..++..+...+.. ....++|.|+||||||+++.+++..+
T Consensus 8 ~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 8 HHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -------------CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccCCCccccCCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34556788899999999874 555555555555543 12379999999999999999998865
No 125
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.04 E-value=2e-05 Score=74.99 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+..|....|.+|++|| +.++-++..+..+.+++..+.. ..+..||++|++.+.+
T Consensus 154 iAraL~~~P~lLlLDE----------Pts~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDE----------PTAGLDPMGVSEIMKLLVEMQK---ELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHTTCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH---HHCCEEEEEESCCSSG
T ss_pred HHHHHHcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHH
Confidence 3445567899999999 5566789899999988887631 1256789999987654
No 126
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.03 E-value=4.9e-06 Score=80.94 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=68.8
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecchhh--h---hh---hh----------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELV--Q---KY---VG---------------- 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~~l~--~---~~---~g---------------- 244 (420)
|++++..++|+||||+|||++|..+|... +...++++..... . .+ .|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 57777889999999999999999999764 5567777765420 0 00 00
Q ss_pred hhH---HHHHHHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 245 EGA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 245 ~~~---~~v~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
..+ ..+..+....+. ..+.+|+||.+..+....... .+...+.+..+.+++..+..+....++.||++.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG-RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT-TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 011 123333444455 678999999999886422110 01111223344455554443333446777776543
No 127
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.01 E-value=1.5e-05 Score=75.49 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=40.6
Q ss_pred HHHHHHHhC------CCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 252 ELFQMARSK------KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 252 ~~f~~a~~~------~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
-.+..|... .|.+|++|| +.++-|...+..+.+++..+. ..++..||++|++.+
T Consensus 150 v~iAraL~~~~~~~~~p~lLllDE----------Pts~LD~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 150 VQLARVLAQLWQPQPTPRWLFLDE----------PTSALDLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLN 209 (266)
T ss_dssp HHHHHHHHHTCCSSCCCEEEEECC----------CCSSCCHHHHHHHHHHHHHHH---HHSSEEEEEECSCHH
T ss_pred HHHHHHHhcccccCCCCCEEEEeC----------ccccCCHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHH
Confidence 334445556 899999999 566778999999999888764 234578999999764
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.01 E-value=6.1e-06 Score=75.18 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGS 236 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~ 236 (420)
|+.++..+.|.||+|+|||||++.++... +...++++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 56777789999999999999999999843 3336666654
No 129
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.99 E-value=3.8e-05 Score=72.17 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=37.3
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.|....|.+|++|| +.++-+...+..+.+++..+. ..+..||++|+.++
T Consensus 159 raL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~----~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 159 RALMVNPRLAILDE----------PTSGLDVLNAREVRKILKQAS----QEGLTILVSSHNML 207 (256)
T ss_dssp HHHTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEEECCHH
T ss_pred HHHHcCCCEEEEeC----------CccccCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHH
Confidence 34557899999999 555678999999999988774 22567888888754
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.98 E-value=1e-05 Score=81.00 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=66.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecchhhh--------hhhh----------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ--------KYVG---------------- 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~~l~~--------~~~g---------------- 244 (420)
|+.+...+.|+||||||||+|++.++-.. +...+++++.+... ...|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 67777789999999999999999776322 34467776654210 0001
Q ss_pred ---hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 245 ---EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 245 ---~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.....+..+........|.+|+||++-.+....... .+.-.+.++.+.+++..+..+....++.||++++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 001122223333445679999999998876532221 111123344444444444333334467888888753
No 131
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.97 E-value=8.5e-06 Score=79.95 Aligned_cols=119 Identities=15% Similarity=0.196 Sum_probs=67.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecchhhh-----hh---hh----------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ-----KY---VG---------------- 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~~l~~-----~~---~g---------------- 244 (420)
|++++..++|+||||+|||+||..+|... +...++++...... .+ .|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 57777789999999999999999999862 45677777654200 00 00
Q ss_pred hhH---HHHHHHHHHHHh--CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 245 EGA---RMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 245 ~~~---~~v~~~f~~a~~--~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
..+ ..+..+...+.. ..+.+|+||.+..+.....+. .+.....+..+.+++..+..+....++.||++....
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG-RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG-GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 011 122223344445 678999999999986432110 011111222344444444433334567777766543
No 132
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.97 E-value=2.6e-05 Score=77.43 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=38.7
Q ss_pred HHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 253 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.+..|....|.+|++|| +.++-|...+..+..++..+. ...++.+|++|++.+
T Consensus 143 aiArAL~~~P~lLLLDE----------Pts~LD~~~~~~l~~~l~~l~---~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 143 AIGRTLVAEPSVFLLDE----------PLSNLDAALRVQMRIEISRLH---KRLGRTMIYVTHDQV 195 (381)
T ss_dssp HHHHHHHHCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHHHcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHHH---HhCCCEEEEEECCHH
Confidence 34445567899999999 555678888888888887763 123567899999764
No 133
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.95 E-value=3.5e-05 Score=72.04 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=38.0
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+..|....|.+|++|| +.++-+......+.+++..+. . +..||++|+.++.
T Consensus 156 iAraL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~~~----~-g~tviivtH~~~~ 206 (247)
T 2ff7_A 156 IARALVNNPKILIFDE----------ATSALDYESEHVIMRNMHKIC----K-GRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHTTCCSEEEECC----------CCSCCCHHHHHHHHHHHHHHH----T-TSEEEEECSSGGG
T ss_pred HHHHHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHc----C-CCEEEEEeCCHHH
Confidence 3444556789999999 455678899999999988773 2 4578888887653
No 134
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.95 E-value=3.2e-05 Score=76.31 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=39.6
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++|| +.++-++..+..+.+++..+. ...+..||++|+..+
T Consensus 174 IArAL~~~P~lLLlDE----------PTs~LD~~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 174 IARALASNPKVLLCDQ----------ATSALDPATTRSILELLKDIN---RRLGLTILLITHEMD 225 (366)
T ss_dssp HHHHTTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HHSCCEEEEEESCHH
T ss_pred HHHHHhcCCCEEEEEC----------CCccCCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHH
Confidence 4445567899999999 555678999999999998774 133677899999764
No 135
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.93 E-value=3.8e-05 Score=71.18 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=38.9
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++|| +.++-|...+..+.+++..+. ...+..||++|++++
T Consensus 156 iAral~~~p~llllDE----------Pts~LD~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 156 IARALANNPPIILADQ----------PTWALDSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 4445557899999999 556678889999998888764 122567899999764
No 136
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.92 E-value=1.6e-05 Score=76.69 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|-.+..|....|.||++||. .++-+......+.+++..+. . +..+|++|++.+
T Consensus 198 RvaiARAL~~~p~iLlLDEP----------ts~LD~~~~~~i~~~l~~l~----~-~~Tvi~itH~l~ 250 (306)
T 3nh6_A 198 RVAIARTILKAPGIILLDEA----------TSALDTSNERAIQASLAKVC----A-NRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHHHHHHCCSEEEEECC----------SSCCCHHHHHHHHHHHHHHH----T-TSEEEEECCSHH
T ss_pred HHHHHHHHHhCCCEEEEECC----------cccCCHHHHHHHHHHHHHHc----C-CCEEEEEEcChH
Confidence 33455555678899999994 45568888888888887764 2 346788888764
No 137
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.91 E-value=9.9e-07 Score=68.16 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHhhCCCCcccccc----------ccccccccChhhHHHHHHHH
Q 014712 342 ESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGKHSP----------FRSCFMVNPHDDYCKMLYVY 399 (420)
Q Consensus 342 ~~R~~Il~~~~~~~~~~~~v~l~~la~~t~g~sgadl~----------~~~~~~~~~~~d~~~~~~~~ 399 (420)
++|.+||+.|++++++..++|++.||..|+|||||||. .+.....++..||..|+..+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 46899999999999988899999999999999999999 22334557778888888654
No 138
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.91 E-value=7.4e-05 Score=70.54 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=39.5
Q ss_pred HHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
..|....|.+|++|| +.++-|......+.+++..+. .. +..||++|+.++.+.
T Consensus 150 AraL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 150 ASVIVHEPDILILDE----------PLVGLDREGKTDLLRIVEKWK---TL-GKTVILISHDIETVI 202 (266)
T ss_dssp HHHHTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTTG
T ss_pred HHHHHcCCCEEEEcC----------ccccCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 334456889999999 455678999999999988763 12 567889999876543
No 139
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.91 E-value=1.4e-05 Score=78.72 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=32.6
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc---------CCcEEEEecch
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSE 237 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~---------~~~~i~v~~~~ 237 (420)
.|++++..+.|+||+|+|||+|++.++... +...+++++.+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 367777789999999999999999999875 23557776643
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.90 E-value=3.4e-05 Score=70.90 Aligned_cols=39 Identities=33% Similarity=0.331 Sum_probs=30.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEecc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGS 236 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~~ 236 (420)
|+.++..++|+||||+|||+++..+|.. .+...++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 6777888999999999999998888764 35566666543
No 141
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.89 E-value=5.3e-05 Score=74.69 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=38.5
Q ss_pred HHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 253 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.+..|....|.+|++|| +.++-|......+..++..+.. ..+..+|++|+..+
T Consensus 143 alArAL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDE----------PLSNLDANLRMIMRAEIKHLQQ---ELGITSVYVTHDQA 195 (359)
T ss_dssp HHHHHHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHHH---HHCCEEEEEESCHH
T ss_pred HHHHHHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEcCCHH
Confidence 34445667899999999 4556788888888888877631 22567888998754
No 142
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.88 E-value=4e-05 Score=70.49 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=36.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|....|.+|++|| +.++-|......+.+++..+. .. +..||++|+..+
T Consensus 154 al~~~p~lllLDE----------Pt~~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 154 ALANEPILLFADE----------PTGNLDSANTKRVMDIFLKIN---EG-GTSIVMVTHERE 201 (224)
T ss_dssp HTTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHH
T ss_pred HHHcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHH
Confidence 4446789999999 455678889999999888764 12 567888998754
No 143
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.88 E-value=5e-05 Score=74.79 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 252 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
-.+..|....|.+|++|| +.++-|......+...+..+. ...+..+|++|+..+
T Consensus 147 ValArAL~~~P~lLLLDE----------Pts~LD~~~r~~l~~~l~~~~---~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 147 AALARALAPDPELILLDE----------PFSALDEQLRRQIREDMIAAL---RANGKSAVFVSHDRE 200 (359)
T ss_dssp HHHHHHHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HHTTCEEEEECCCHH
T ss_pred HHHHHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 344556668899999999 455668888877776554432 133567899999754
No 144
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.87 E-value=6.1e-05 Score=70.93 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=38.2
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+..|....|.+|++|| +.++-+......+.+++..+. . +..||++|++++.+
T Consensus 166 lAraL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~l~----~-~~tviivtH~~~~~ 217 (260)
T 2ghi_A 166 IARCLLKDPKIVIFDE----------ATSSLDSKTEYLFQKAVEDLR----K-NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHCCSEEEEEC----------CCCTTCHHHHHHHHHHHHHHT----T-TSEEEEECSSGGGS
T ss_pred HHHHHHcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHhc----C-CCEEEEEcCCHHHH
Confidence 3344456788999999 455678888999999988774 2 35788899976543
No 145
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.87 E-value=4.8e-05 Score=74.86 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=37.7
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++|| +.++-|......+..++..+.. ..+..+|++|+..+
T Consensus 156 lArAL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 156 LARALAPRPQVLLFDE----------PFAAIDTQIRRELRTFVRQVHD---EMGVTSVFVTHDQE 207 (355)
T ss_dssp HHHHHTTCCSEEEEES----------TTCCSSHHHHHHHHHHHHHHHH---HHTCEEEEECSCHH
T ss_pred HHHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEECCCHH
Confidence 3445567899999999 4556788888888888877631 22567888998754
No 146
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.87 E-value=2.9e-05 Score=73.62 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=38.7
Q ss_pred HHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 253 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.+..|....|.+|++|| +.++-|......+.+++..+. ...+..||++|++++
T Consensus 166 ~lAraL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~~~---~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 166 ALARALIRKPRLLILDN----------ATSALDAGNQLRVQRLLYESP---EWASRTVLLITQQLS 218 (271)
T ss_dssp HHHHHHTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHCT---TTTTSEEEEECSCHH
T ss_pred HHHHHHhcCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHH
Confidence 34445567899999999 455678888999999888763 123567888898754
No 147
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.87 E-value=3.1e-05 Score=71.91 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|-.+..|....|.+|++|| +.++-|......+.+++....... .+..||++|++.+.+
T Consensus 135 Rv~lAraL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 135 RVSLARAVYSNADIYLFDD----------PLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYL 192 (237)
T ss_dssp HHHHHHHHHHCCSEEEEES----------TTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTG
T ss_pred HHHHHHHHhcCCCEEEEeC----------cccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHH
Confidence 3345555667889999999 455678888888877764222221 256788899887643
No 148
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.86 E-value=1.9e-05 Score=76.18 Aligned_cols=117 Identities=14% Similarity=0.207 Sum_probs=64.6
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEEecchhhhh----hhh------------hhHHHHHHHHHH
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQK----YVG------------EGARMVRELFQM 256 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v~~~~l~~~----~~g------------~~~~~v~~~f~~ 256 (420)
|+.+. .++++||||+|||+|+-.++... +...+++++.+-... ..| ..+...-.+...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56666 68999999999999988776543 567788876543211 011 112220122222
Q ss_pred ---HHhCCCcEEEecCcccccCC-ccCCCCCC----CHHHHHHHHHHHHHhcCCcCCCCeEEEEEeC
Q 014712 257 ---ARSKKACIVFFDEVDAIGGA-RFDDGVGG----DNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (420)
Q Consensus 257 ---a~~~~p~Il~iDEiD~l~~~-r~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn 315 (420)
.+...|.+|+||-|..+.+. ..+...+. +...++.+.+.|..+.++-...++.+|++..
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 24578999999999999742 21111110 0123345555554443333356676666543
No 149
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.84 E-value=9.7e-05 Score=76.91 Aligned_cols=168 Identities=10% Similarity=0.087 Sum_probs=97.2
Q ss_pred cccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHH----hcCCc---EEEEecchh-----
Q 014712 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN----RTDAC---FIRVIGSEL----- 238 (420)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~----~~~~~---~i~v~~~~l----- 238 (420)
+|.+..++.|.+++... +-.....+.|+|+.|+|||+||+.+++ ..... .++++.+..
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999988541 112345688999999999999999996 33222 233333321
Q ss_pred h---hhh---hhh-------------hHHHHHHHHHHHHhCC-CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHH
Q 014712 239 V---QKY---VGE-------------GARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (420)
Q Consensus 239 ~---~~~---~g~-------------~~~~v~~~f~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (420)
. ... .+. ....+...+....... ..+|+||+++.. .. + .+..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~------------~~----~-~~~~- 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE------------ET----I-RWAQ- 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH------------HH----H-HHHH-
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc------------hh----h-cccc-
Confidence 0 000 110 0111223333333443 789999998763 11 1 1111
Q ss_pred hcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEccCCCHHHHHHHHHHHHhcCCCCCC--ccHHHHHhhCCCCccc
Q 014712 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD--IRFELLSRLCPNSTGK 376 (420)
Q Consensus 299 l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~~~--v~l~~la~~t~g~sga 376 (420)
..+..||+||+...... . . +.....+.++..+.++-.++|..+........+ .....|++.|.|.+-|
T Consensus 263 ------~~gs~ilvTTR~~~v~~-~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLA 332 (549)
T 2a5y_B 263 ------ELRLRCLVTTRDVEISN-A-A--SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPAT 332 (549)
T ss_dssp ------HTTCEEEEEESBGGGGG-G-C--CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHH
T ss_pred ------cCCCEEEEEcCCHHHHH-H-c--CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHH
Confidence 14557888887543211 1 1 113357889999999999999887533221111 1256788889988764
No 150
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.83 E-value=4.1e-05 Score=71.64 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|....|.+|++||- .++-|...+..+.+++..+. ..+..||++|++.+.
T Consensus 157 aL~~~p~lllLDEP----------ts~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 157 LLVLEPTYAVLDET----------DSGLDIDALKVVARGVNAMR----GPNFGALVITHYQRI 205 (250)
T ss_dssp HHHHCCSEEEEECG----------GGTTCHHHHHHHHHHHHHHC----STTCEEEEECSSSGG
T ss_pred HHHcCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCHHH
Confidence 33356889999994 44568888999999988874 235678889987653
No 151
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.82 E-value=3.6e-05 Score=75.90 Aligned_cols=98 Identities=22% Similarity=0.252 Sum_probs=58.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEecc-hhh---------hhhhhhhHHHHHHHHHHHHhCCCcEEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGS-ELV---------QKYVGEGARMVRELFQMARSKKACIVF 266 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~-~l~---------~~~~g~~~~~v~~~f~~a~~~~p~Il~ 266 (420)
+...+++.||+|+||||+++++++.. +..++.+... ++. +...+.....+...+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 34468999999999999999998864 3333333211 111 001111112344567777789999999
Q ss_pred ecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+||+- +.+....+.++.. . +..||+|++..+.
T Consensus 202 lDEp~-------------d~e~~~~~~~~~~-------~-G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 202 VGEMR-------------DLETIRLALTAAE-------T-GHLVFGTLHTTSA 233 (356)
T ss_dssp ESCCC-------------SHHHHHHHHHHHH-------T-TCEEEEEESCSSH
T ss_pred cCCCC-------------CHHHHHHHHHHHh-------c-CCEEEEEEccChH
Confidence 99973 3444444333322 2 3458888887653
No 152
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.82 E-value=4.7e-05 Score=70.83 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=37.6
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++|| +.++-|...+..+.+++..+.. ..+..||++|+..+
T Consensus 137 lAral~~~p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~~---~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 137 LARALVIQPRLLLLDE----------PLSAVDLKTKGVLMEELRFVQR---EFDVPILHVTHDLI 188 (240)
T ss_dssp HHHHHTTCCSSBEEES----------TTSSCCHHHHHHHHHHHHHHHH---HHTCCEEEEESCHH
T ss_pred HHHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 3345557899999999 5556789999999988887631 22456888888754
No 153
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.82 E-value=9.9e-05 Score=69.63 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=37.5
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.|....|.+|++|| +.++-|...+..+.+++..+. ..+..||++|+..+
T Consensus 172 raL~~~p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~----~~g~tvi~vtHd~~ 220 (263)
T 2olj_A 172 RALAMEPKIMLFDE----------PTSALDPEMVGEVLSVMKQLA----NEGMTMVVVTHEMG 220 (263)
T ss_dssp HHHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH----HTTCEEEEECSCHH
T ss_pred HHHHCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHH
Confidence 34457889999999 555678999999999988774 22567888998754
No 154
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.81 E-value=5.1e-05 Score=74.91 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=36.7
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++||- .++-|......+..++..+.. ..+..+|++|+..+
T Consensus 144 lArAL~~~P~lLLLDEP----------~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 144 IARALVKEPEVLLLDEP----------LSNLDALLRLEVRAELKRLQK---ELGITTVYVTHDQA 195 (362)
T ss_dssp HHHHHTTCCSEEEEESG----------GGGSCHHHHHHHHHHHHHHHH---HHTCEEEEEESCHH
T ss_pred HHHHHHcCCCEEEEECc----------cccCCHHHHHHHHHHHHHHHH---hCCCEEEEECCCHH
Confidence 34455678999999994 334678888888888877631 22567888998754
No 155
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.81 E-value=7.4e-05 Score=70.17 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=38.9
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|....|.+|++|| +.++-|...+..+.+++..+. ..+..||++|++.+.+
T Consensus 167 aL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 167 ALMTNPKMIVMDE----------PIAGVAPGLAHDIFNHVLELK----AKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECSCCSTT
T ss_pred HHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHHHH
Confidence 4457889999999 556678999999999998774 2256788999987654
No 156
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.81 E-value=5.4e-05 Score=75.00 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=37.6
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++|| +.++-|......+..++..+.. ..+..+|++|+..+
T Consensus 152 lArAL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 152 VARAIVVEPDVLLMDE----------PLSNLDAKLRVAMRAEIKKLQQ---KLKVTTIYVTHDQV 203 (372)
T ss_dssp HHHHHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHHH---HHTCEEEEEESCHH
T ss_pred HHHHHhcCCCEEEEcC----------CCccCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHH
Confidence 3445557899999999 4556788888888888877631 22567888998754
No 157
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.79 E-value=3.2e-05 Score=73.27 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
|+.++..++|+||+|+|||+|++.++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5667778999999999999999999864
No 158
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.79 E-value=0.00011 Score=69.00 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=38.1
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++|| +.++-|......+.+++..+. ...+..||++|+..+
T Consensus 139 lAraL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 139 IARAIASECKLILLDE----------PTSALDLANQDIVLSLLIDLA---QSQNMTVVFTTHQPN 190 (253)
T ss_dssp HHHHHHTTCSEEEESS----------SSTTSCHHHHHHHHHHHHHHH---HTSCCEEEEEESCHH
T ss_pred HHHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHH
Confidence 3345557899999999 455678889999999888764 122567888998754
No 159
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.79 E-value=7.7e-05 Score=73.24 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=37.8
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++|| +.++-|......+..++..+. ...+..+|++|+..+
T Consensus 138 lAraL~~~P~lLLLDE----------P~s~LD~~~~~~l~~~l~~l~---~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 138 LARALVTNPKILLLDE----------PLSALDPRTQENAREMLSVLH---KKNKLTVLHITHDQT 189 (348)
T ss_dssp HHHHTTSCCSEEEEES----------SSTTSCHHHHHHHHHHHHHHH---HHTTCEEEEEESCHH
T ss_pred HHHHHHcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 3345557899999999 455678888888888887763 123567888998754
No 160
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.78 E-value=6.9e-05 Score=70.13 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=36.3
Q ss_pred HHhCCCc-------EEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKAC-------IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~-------Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|....|. +|++|| +.++-|...+..+.+++..+. ..+..||++|++.+
T Consensus 140 aL~~~p~~~~~~~~lllLDE----------Pts~LD~~~~~~l~~~l~~l~----~~g~tviivtHd~~ 194 (249)
T 2qi9_C 140 VVLQITPQANPAGQLLLLDE----------PMNSLDVAQQSALDKILSALS----QQGLAIVMSSHDLN 194 (249)
T ss_dssp HHHHHCTTTCTTCCEEEESS----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECSCHH
T ss_pred HHHcCCCcCCCCCeEEEEEC----------CcccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHH
Confidence 4445688 999999 555678999999999988763 12557888998754
No 161
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.77 E-value=4.7e-05 Score=70.04 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=42.9
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecch-------hhhhhhhhh-----HHHHHHHHHHHHh----CCC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE-------LVQKYVGEG-----ARMVRELFQMARS----KKA 262 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~-------l~~~~~g~~-----~~~v~~~f~~a~~----~~p 262 (420)
..-++++||+|+||||++..++..+ +...+.+.... +... .|-. ......++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3457788999999999998888765 45555553221 1110 1100 0012345555544 357
Q ss_pred cEEEecCcccc
Q 014712 263 CIVFFDEVDAI 273 (420)
Q Consensus 263 ~Il~iDEiD~l 273 (420)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999876
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.77 E-value=3e-05 Score=73.12 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=44.4
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcC---CcEEEEecchh--h---------hhhhhhhHHHHHHHHHHHHhCCCcE
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSEL--V---------QKYVGEGARMVRELFQMARSKKACI 264 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l--~---------~~~~g~~~~~v~~~f~~a~~~~p~I 264 (420)
+.+...++|.||+|+||||+++++++... ..-+.+.+..+ . +..++.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 35566789999999999999999998542 11222222111 0 0001111123355666666678999
Q ss_pred EEecCc
Q 014712 265 VFFDEV 270 (420)
Q Consensus 265 l~iDEi 270 (420)
|++||.
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999996
No 163
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.77 E-value=3.2e-06 Score=74.31 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.7
Q ss_pred CCCCCcceeeCCCCChHHHHHHH
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARA 221 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Laka 221 (420)
+.++.-+.|.||+|+|||||+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 44566789999999999999994
No 164
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.75 E-value=2e-05 Score=69.00 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=31.7
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
+..++|+|+||+||||++++++..++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4568999999999999999999999988887765544
No 165
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.75 E-value=2.1e-05 Score=76.16 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=66.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---------------C----CcEEEEecchhh--h---hh---hh------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------------D----ACFIRVIGSELV--Q---KY---VG------ 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---------------~----~~~i~v~~~~l~--~---~~---~g------ 244 (420)
|++++..++|+||||+|||++|..+|... | ...++++..... . .+ .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 56677789999999999999999998752 2 466777654321 1 00 00
Q ss_pred ----------hhH---HHHHHHHHHHHh-CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEE
Q 014712 245 ----------EGA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (420)
Q Consensus 245 ----------~~~---~~v~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 310 (420)
..+ ..+..+...... ..+.+|+||.+..+.....+. .+...+.+..+.+++..+..+....++.|
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG-RGKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC-TTSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 011 122233344444 678899999999886422111 01111223344555555444333556777
Q ss_pred EEEeC
Q 014712 311 LMATN 315 (420)
Q Consensus 311 I~ttn 315 (420)
|++..
T Consensus 253 i~~nq 257 (322)
T 2i1q_A 253 LVTNQ 257 (322)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 77644
No 166
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.74 E-value=6.1e-05 Score=79.03 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
|-.+.+|....|.++++|| +.++-|+.....+.+++..+. . +..+|++|++++.+
T Consensus 485 rv~lAral~~~p~illlDE----------pts~LD~~~~~~i~~~l~~~~----~-~~t~i~itH~l~~~ 539 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDE----------ATSALDLESESIIQEALDVLS----K-DRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHHHHHHCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHT----T-TSEEEEECSSGGGT
T ss_pred HHHHHHHHHcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 3344455557889999999 444568888888888887763 2 34678889987644
No 167
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.73 E-value=7.6e-05 Score=69.37 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=36.4
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|....|.+|++|| +.++-|......+.+++..+.. .+..||++|+.++
T Consensus 153 aL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~~~~----~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 153 ALMSRPKLLMMDE----------PSLGLAPILVSEVFEVIQKINQ----EGTTILLVEQNAL 200 (240)
T ss_dssp HHTTCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH----TTCCEEEEESCHH
T ss_pred HHHcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHH
Confidence 4456889999999 5556789999999999887641 3456888888753
No 168
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.72 E-value=8.9e-06 Score=72.59 Aligned_cols=31 Identities=19% Similarity=0.049 Sum_probs=22.4
Q ss_pred CcceeeCCCCChHHHHHHHHHHhc---CCcEEEE
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRV 233 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~---~~~~i~v 233 (420)
.-++++||+|+||||++..++..+ +...+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999986666543 4444443
No 169
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.71 E-value=8.7e-05 Score=73.51 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++|| +.++-|......+..++..+.. ..+..+|++|+..+
T Consensus 150 lArAL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 150 LGRAIVRKPQVFLMDE----------PLSNLDAKLRVRMRAELKKLQR---QLGVTTIYVTHDQV 201 (372)
T ss_dssp HHHHHHTCCSEEEEEC----------TTTTSCHHHHHHHHHHHHHHHH---HHTCEEEEEESCHH
T ss_pred HHHHHhcCCCEEEECC----------CCccCCHHHHHHHHHHHHHHHH---hcCCEEEEECCCHH
Confidence 3345557899999999 4556788888888888877631 22567888998754
No 170
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.69 E-value=0.00015 Score=68.30 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=36.5
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|....|.+|++|| +.++-|...+..+.+++..+.. . +..||++|+..+
T Consensus 167 aL~~~p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~~ 214 (262)
T 1b0u_A 167 ALAMEPDVLLFDE----------PTSALDPELVGEVLRIMQQLAE---E-GKTMVVVTHEMG 214 (262)
T ss_dssp HHHTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHHH---T-TCCEEEECSCHH
T ss_pred HHhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHH
Confidence 4446789999999 5556789999999999887741 2 556888898754
No 171
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.69 E-value=7.5e-05 Score=78.66 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.|-.+.+|....|.|+++||. .++-|......+.+.+..+. .+..+|++|++++.+
T Consensus 498 Qrv~iAral~~~p~illlDEp----------ts~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEA----------TSNVDTKTEKSIQAAMWKLM-----EGKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCC----------CTTCCHHHHHHHHHHHHHHH-----TTSEEEEESCCTTHH
T ss_pred HHHHHHHHHhcCCCEEEEECC----------ccCCCHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 344556666688999999994 44568888888888887763 245788899987643
No 172
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=1.8e-05 Score=71.10 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=29.6
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.+.++..++|.|||||||||+++++|..++.+++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 445667899999999999999999999999887644
No 173
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.67 E-value=6.1e-05 Score=75.10 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 249 ~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
..|-.+..|....|.+|++||--. +-+......+..++..+. .+..+|++|++.+
T Consensus 161 rQRvalARAL~~~P~lLLLDEPts----------~LD~~~~~~l~~~l~~~~-----~~~tvi~vtHd~e 215 (390)
T 3gd7_A 161 KQLMCLARSVLSKAKILLLDEPSA----------HLDPVTYQIIRRTLKQAF-----ADCTVILCEARIE 215 (390)
T ss_dssp HHHHHHHHHHHTTCCEEEEESHHH----------HSCHHHHHHHHHHHHTTT-----TTSCEEEECSSSG
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHh-----CCCEEEEEEcCHH
Confidence 344456666778899999999433 346777777877777542 2456888888754
No 174
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.67 E-value=8.6e-05 Score=67.85 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=35.6
Q ss_pred HHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCC
Q 014712 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (420)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 321 (420)
.|....|.+|++||- .++-+......+.+++..+. ..+..||++|+.++.+.
T Consensus 146 raL~~~p~lllLDEP----------ts~LD~~~~~~l~~~l~~~~----~~g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 146 STLLVNAEIYVLDDP----------VVAIDEDSKHKVLKSILEIL----KEKGIVIISSREELSYC 197 (214)
T ss_dssp HHTTSCCSEEEEEST----------TTTSCTTTHHHHHHHHHHHH----HHHSEEEEEESSCCTTS
T ss_pred HHHHhCCCEEEEECC----------CcCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHH
Confidence 344467899999994 44556777777887777663 12456888888876543
No 175
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.64 E-value=8.1e-05 Score=78.26 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
|-.+.+|....|.|+++||. .++-|......+.+.+..+. .+..+|++|++++.
T Consensus 487 rv~lARal~~~p~illlDEp----------ts~LD~~~~~~i~~~l~~~~-----~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDC----------TSSVDPITEKRILDGLKRYT-----KGCTTFIITQKIPT 540 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESC----------CTTSCHHHHHHHHHHHHHHS-----TTCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECC----------cccCCHHHHHHHHHHHHHhC-----CCCEEEEEecChHH
Confidence 34455566678999999994 45568888888888887763 24678889987653
No 176
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.64 E-value=0.00015 Score=66.59 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=29.6
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh----cCCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~----~~~~~i~v~~ 235 (420)
|+.++.-++++|+||+|||++|..+|.. .+.+.++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5777888999999999999999887643 3566666653
No 177
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.64 E-value=0.00016 Score=75.95 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=36.8
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+..|....|.++++||. .++-|......+.+.+..+. . +..+|++|++++.
T Consensus 491 iAral~~~p~illlDEp----------ts~LD~~~~~~i~~~l~~~~----~-~~tvi~itH~~~~ 541 (582)
T 3b5x_A 491 IARALLRDAPVLILDEA----------TSALDTESERAIQAALDELQ----K-NKTVLVIAHRLST 541 (582)
T ss_pred HHHHHHcCCCEEEEECc----------cccCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHH
Confidence 34445578899999994 44568888888888887763 2 4568888887653
No 178
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.63 E-value=0.00022 Score=67.37 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=36.0
Q ss_pred HhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
....|.+|++|| +.++-|......+.+++..+. ..+..||++|+.++.
T Consensus 179 L~~~p~lLlLDE----------Pts~LD~~~~~~l~~~l~~l~----~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 179 AVLEPELCILDE----------SDSGLDIDALKVVADGVNSLR----DGKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHCCSEEEEES----------TTTTCCHHHHHHHHHHHHTTC----CSSCEEEEECSSGGG
T ss_pred HHhCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeeCHHH
Confidence 335688999999 555678889999999888763 235678889987653
No 179
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.62 E-value=0.00013 Score=71.78 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=36.4
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.+|++|| +.++-|......+..++..+.. ..+..+|++|+..+
T Consensus 151 lAraL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 151 LARALVKDPSLLLLDE----------PFSNLDARMRDSARALVKEVQS---RLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHHTTCCSEEEEES----------TTTTSCGGGHHHHHHHHHHHHH---HHCCEEEEEESCHH
T ss_pred HHHHHHhCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 3445567899999999 4445677777888877776531 22567888998754
No 180
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.60 E-value=0.00015 Score=76.08 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=37.9
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
+..|....|.++++||. .++-|......+.+.+..+. . +..+|++|++++.+
T Consensus 491 iAral~~~p~illlDEp----------ts~LD~~~~~~i~~~l~~~~----~-~~tvi~itH~~~~~ 542 (582)
T 3b60_A 491 IARALLRDSPILILDEA----------TSALDTESERAIQAALDELQ----K-NRTSLVIAHRLSTI 542 (582)
T ss_dssp HHHHHHHCCSEEEEETT----------TSSCCHHHHHHHHHHHHHHH----T-TSEEEEECSCGGGT
T ss_pred HHHHHHhCCCEEEEECc----------cccCCHHHHHHHHHHHHHHh----C-CCEEEEEeccHHHH
Confidence 44445567889999994 44568888888888888764 2 45688899987643
No 181
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.59 E-value=0.00011 Score=69.90 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=30.5
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEe
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVI 234 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~ 234 (420)
.|+.++.-++|.||||+|||+|++.+|... |..++.++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467888889999999999999999998854 43555554
No 182
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.59 E-value=2.9e-05 Score=68.48 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=28.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
++.++|+|+|||||||+++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 55799999999999999999999999887754
No 183
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.58 E-value=3.2e-05 Score=68.46 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=33.7
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
+.++..++|.||+|+||||+++.++...+...+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4566779999999999999999999988777777876554
No 184
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.57 E-value=0.00012 Score=69.76 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=36.3
Q ss_pred HHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEE--EEEeCCCCCC
Q 014712 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV--LMATNRPDTL 320 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v--I~ttn~~~~l 320 (420)
|....|.+|++|| +.++-|...+..+.+++..+.. . +..| |++|+..+.+
T Consensus 175 aL~~~p~lLlLDE----------Pts~LD~~~~~~l~~~l~~l~~---~-g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 175 ALMGQPQVLILDE----------PAAGLDFIARESLLSILDSLSD---S-YPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHH---H-CTTCEEEEEESCGGGC
T ss_pred HHhCCCCEEEEeC----------CccccCHHHHHHHHHHHHHHHH---C-CCEEEEEEEecCHHHH
Confidence 4457889999999 5556788899999988887641 2 3345 8888876543
No 185
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.56 E-value=0.00035 Score=72.32 Aligned_cols=114 Identities=22% Similarity=0.255 Sum_probs=71.7
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHH--HHhc--CCcEEEEecchhhhh------hhh---h-------------------
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAV--ANRT--DACFIRVIGSELVQK------YVG---E------------------- 245 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakal--a~~~--~~~~i~v~~~~l~~~------~~g---~------------------- 245 (420)
++.++..++|.||+|||||||++.+ +... +...+++++.+.... ..| +
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 4567788999999999999999994 4432 445566655431100 000 0
Q ss_pred --------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 246 --------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 246 --------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
................|.+|+|||+-.+... .+.+......+..++..+. ..++.||++|++.
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~----~~g~tvl~itH~~ 185 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLK----QIGATTVMTTERI 185 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHH----HHTCEEEEEEECS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHH----HCCCEEEEEecCC
Confidence 0112223333444567889999998776432 2235667778888888774 2356788899887
Q ss_pred CCC
Q 014712 318 DTL 320 (420)
Q Consensus 318 ~~l 320 (420)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 664
No 186
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.56 E-value=3.8e-05 Score=67.90 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=29.4
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
+..+..++|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4556779999999999999999999999877654
No 187
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.56 E-value=0.00058 Score=70.94 Aligned_cols=74 Identities=16% Similarity=0.303 Sum_probs=55.7
Q ss_pred cEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC--CCCccccCcCcccEEEEccCCC
Q 014712 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLDPALLRPGRLDRKVEFGLPD 340 (420)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~al~r~gRfd~~i~~~~Pd 340 (420)
-+|+|||+..+... ...+....+.++..... .-++.+|++|.+|. .++..++. -|...|.|...+
T Consensus 345 ivvVIDE~~~L~~~-------~~~~~~~~L~~Iar~GR----a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMI-------VGKKVEELIARIAQKAR----AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHH-------TCHHHHHHHHHHHHHCT----TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhh-------hhHHHHHHHHHHHHHHh----hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 58999999987542 12455566666666543 55899999999997 78887777 788889999998
Q ss_pred HHHHHHHHH
Q 014712 341 LESRTQIFK 349 (420)
Q Consensus 341 ~~~R~~Il~ 349 (420)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888777763
No 188
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.56 E-value=5.3e-05 Score=73.90 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=49.1
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecchhhh-----h---hhhhhHHHHHHHHHHHHhCCCcEEEecC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ-----K---YVGEGARMVRELFQMARSKKACIVFFDE 269 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~-----~---~~g~~~~~v~~~f~~a~~~~p~Il~iDE 269 (420)
.++..++|.||+|+|||||++++++... ...+.+.+..... . +...+....+..+..|....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 4566899999999999999999999753 3345555432110 0 1100233456677778788999999999
Q ss_pred cc
Q 014712 270 VD 271 (420)
Q Consensus 270 iD 271 (420)
.-
T Consensus 249 ~~ 250 (330)
T 2pt7_A 249 LR 250 (330)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 189
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.55 E-value=0.00016 Score=73.42 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=31.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~ 235 (420)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67888889999999999999999998743 556766654
No 190
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.53 E-value=0.00039 Score=65.46 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=37.0
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
+..|....|.+|++|| +.++-|......+.+++..+.. .||++|+.++.
T Consensus 139 lAraL~~~p~lllLDE----------Pts~LD~~~~~~l~~~L~~~~~-------tviivtHd~~~ 187 (263)
T 2pjz_A 139 TSLALASQPEIVGLDE----------PFENVDAARRHVISRYIKEYGK-------EGILVTHELDM 187 (263)
T ss_dssp HHHHHHTCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHSCS-------EEEEEESCGGG
T ss_pred HHHHHHhCCCEEEEEC----------CccccCHHHHHHHHHHHHHhcC-------cEEEEEcCHHH
Confidence 3344557889999999 4556789999999999887642 68889987643
No 191
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.53 E-value=0.00033 Score=72.47 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=70.0
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh--------------h------------h--hhh
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK--------------Y------------V--GEG 246 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~--------------~------------~--g~~ 246 (420)
++.++..++|.||+|+|||+|++.++... |...+++...+-... + . -.+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 66778889999999999999999998753 444555543221100 0 0 023
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 247 ~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
....+.++..+....|.+|+||=+..+... ....+....+..++..+. ..++.+|++++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~------~~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG------VSNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS------SCHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh------CChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 445566777777789999999965555221 011235666667776664 2356777777765
No 192
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.50 E-value=0.00017 Score=82.63 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=27.6
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
++.++++..+.|.||+|+|||||++++.+.+.
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34567888899999999999999999998763
No 193
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.49 E-value=0.00025 Score=66.11 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=33.5
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
...|..++|.|+||+||||+++.++..++..++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3456679999999999999999999999876777777665
No 194
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.48 E-value=7e-05 Score=65.10 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=26.4
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
+..+.|.||+||||||+++.+|..++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456999999999999999999999987554
No 195
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.47 E-value=0.00024 Score=67.78 Aligned_cols=39 Identities=31% Similarity=0.481 Sum_probs=31.3
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
..|..++|.||||+||||+++.++.+++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 345678999999999999999999988655677776444
No 196
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.47 E-value=6.5e-05 Score=65.98 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=29.0
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
..+..++|+|+||+||||+++.++..++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999998876543
No 197
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.46 E-value=0.00019 Score=71.16 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=46.6
Q ss_pred hhcCCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEecc-hh--------h-hhhhhhhHHHHHHHHHHHHhC
Q 014712 195 VKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGS-EL--------V-QKYVGEGARMVRELFQMARSK 260 (420)
Q Consensus 195 ~~~gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~-~l--------~-~~~~g~~~~~v~~~f~~a~~~ 260 (420)
..+.+.++..++|.||+|+||||+++++++.. ...++.+... ++ + +..+|.....++..+..+...
T Consensus 129 ~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 129 LELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp HHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhh
Confidence 33445566679999999999999999999854 2333333211 10 0 000111112234556666667
Q ss_pred CCcEEEecCc
Q 014712 261 KACIVFFDEV 270 (420)
Q Consensus 261 ~p~Il~iDEi 270 (420)
.|.+|++||+
T Consensus 209 ~pd~illdE~ 218 (372)
T 2ewv_A 209 DPDVIFVGEM 218 (372)
T ss_dssp CCSEEEESCC
T ss_pred CcCEEEECCC
Confidence 8999999997
No 198
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.45 E-value=0.00023 Score=82.46 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=76.5
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHH---hcCCcEEEEecchhh----------------hhhhhhhHHHHHHHHHHHHhC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVAN---RTDACFIRVIGSELV----------------QKYVGEGARMVRELFQMARSK 260 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~---~~~~~~i~v~~~~l~----------------~~~~g~~~~~v~~~f~~a~~~ 260 (420)
+..+.+.+|||+|||||+||-+++. ..|....+++...-. -.+...++..+..+...++..
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~ 1508 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1508 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcC
Confidence 3444599999999999999987765 346677777654221 113445677788888888999
Q ss_pred CCcEEEecCcccccCCccCCCCCCCHH---HHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 261 KACIVFFDEVDAIGGARFDDGVGGDNE---VQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~---~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
++++|++|-+.+|.++..-.+..++.. ..+.|.+.|..+.+.-...++.+|++...
T Consensus 1509 ~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~ 1567 (1706)
T 3cmw_A 1509 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1567 (1706)
T ss_dssp CCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECB
T ss_pred CCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeecc
Confidence 999999999999987643221111111 23455566666655555667777776543
No 199
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.45 E-value=0.00045 Score=75.90 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHh-----cCCc--------------EEEEecchhhhhhhhhhHHHHHHHHHHH-H
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANR-----TDAC--------------FIRVIGSELVQKYVGEGARMVRELFQMA-R 258 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~-----~~~~--------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a-~ 258 (420)
+.++..++|.||.|+||||+.|.++.- .+.. +-.+...+.............+.+...+ .
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh
Confidence 345567899999999999999998742 1211 1111111111111111111111221111 2
Q ss_pred hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHH-HHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~-~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
...|++|+|||.-+ |.+......+. .++..+. ...+..+|++|+..+..
T Consensus 750 a~~p~LlLLDEP~~----------GlD~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 750 ATSQSLVILDELGR----------GTSTHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CCTTCEEEEESTTT----------TSCHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGG
T ss_pred ccCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHH
Confidence 57889999999643 45665444444 6666552 12356789999986543
No 200
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=5.8e-05 Score=66.84 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=27.5
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHh-cCCcEEE
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANR-TDACFIR 232 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~-~~~~~i~ 232 (420)
..+..++|+|+|||||||+++.++.. ++.+++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 34557999999999999999999998 6766553
No 201
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.42 E-value=0.00026 Score=81.06 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=26.9
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
++.++++..+-|.||+|+|||||++++.+-.
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 3456788889999999999999999999854
No 202
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.41 E-value=0.00036 Score=64.24 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=25.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
.+.++..+.|.||+|+|||||+++++...
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45667789999999999999999999864
No 203
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.40 E-value=8.4e-05 Score=64.27 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=27.3
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEe
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 234 (420)
.++|.|+|||||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876544
No 204
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.39 E-value=0.00031 Score=65.78 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=31.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEecchhh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELV 239 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~~~l~ 239 (420)
+..++|.|+||+||||+|+.++.. .|..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 446899999999999999999997 68887766665543
No 205
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.38 E-value=0.00089 Score=60.08 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=68.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHhc---CCcEEEE---ecc------hhhhhhh-----------------hhhHHHHHHH
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRV---IGS------ELVQKYV-----------------GEGARMVREL 253 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~---~~~~i~v---~~~------~l~~~~~-----------------g~~~~~v~~~ 253 (420)
..+++|+++|.||||+|-++|-++ |..+..+ .+. .+..... .+........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358899999999999999998764 6666655 221 1222220 0012334455
Q ss_pred HHHHHh----CCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCc
Q 014712 254 FQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329 (420)
Q Consensus 254 f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gR 329 (420)
+..++. ..+++|+|||+-....-.. -+ ...+.+++.. ...+.-||+|+|.+ +++|+. .
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~-----l~---~~ev~~~l~~-----Rp~~~~vIlTGr~a---p~~l~e--~ 170 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY-----LP---LEEVISALNA-----RPGHQTVIITGRGC---HRDILD--L 170 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS-----SC---HHHHHHHHHT-----SCTTCEEEEECSSC---CHHHHH--H
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC-----CC---HHHHHHHHHh-----CcCCCEEEEECCCC---cHHHHH--h
Confidence 555543 5678999999854311110 01 1234555542 25567899999975 455555 5
Q ss_pred ccEEEEcc
Q 014712 330 LDRKVEFG 337 (420)
Q Consensus 330 fd~~i~~~ 337 (420)
-|.+-++.
T Consensus 171 AD~VTem~ 178 (196)
T 1g5t_A 171 ADTVSELR 178 (196)
T ss_dssp CSEEEECC
T ss_pred Ccceeeec
Confidence 55555554
No 206
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.38 E-value=0.00038 Score=72.31 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.+-.+..|....|.+|++|| +.++-+...+..+.+++..+.. .+..||++|++.+
T Consensus 165 QRv~iAraL~~~P~lLlLDE----------PTs~LD~~~~~~l~~~L~~l~~----~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDE----------PSSYLDIRQRLNAARAIRRLSE----EGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHH
T ss_pred HHHHHHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHH
Confidence 34445556678899999999 5666788888889988887742 3567888998754
No 207
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.37 E-value=0.00012 Score=68.06 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=24.9
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
+.+.++..+.|.||+|+|||||+++++..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34566777999999999999999999985
No 208
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.37 E-value=0.00053 Score=71.17 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=69.9
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcC----------CcEEEEec----------chhhh------------------
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD----------ACFIRVIG----------SELVQ------------------ 240 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~----------~~~i~v~~----------~~l~~------------------ 240 (420)
+.++..+.|.||+|+|||||+++++.... ..+-++.. .+...
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 45667789999999999999999998531 11111100 00000
Q ss_pred ----------hhhhh--hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCe
Q 014712 241 ----------KYVGE--GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (420)
Q Consensus 241 ----------~~~g~--~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (420)
.++++ +....|-.+..|....|.+|++|| +.++-|...+..+.+++..+. ...+.
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~~l~~l~---~~~g~ 437 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ----------PSSYLDVEERYIVAKAIKRVT---RERKA 437 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH---HHTTC
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH---HhCCC
Confidence 00010 233445566777778999999999 566778888888888888763 12356
Q ss_pred EEEEEeCCCC
Q 014712 309 KVLMATNRPD 318 (420)
Q Consensus 309 ~vI~ttn~~~ 318 (420)
.||++|+..+
T Consensus 438 tvi~vsHdl~ 447 (538)
T 3ozx_A 438 VTFIIDHDLS 447 (538)
T ss_dssp EEEEECSCHH
T ss_pred EEEEEeCCHH
Confidence 7888888654
No 209
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.37 E-value=0.00036 Score=70.69 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=31.2
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~ 235 (420)
|+.++.-++|.|+||+|||++|..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67888889999999999999999888743 556777654
No 210
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.36 E-value=0.0001 Score=64.46 Aligned_cols=29 Identities=38% Similarity=0.600 Sum_probs=26.3
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
.++|.|+|||||||+++.+|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987654
No 211
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00054 Score=72.12 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCC
Q 014712 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (420)
Q Consensus 253 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ 319 (420)
.+..|....|.+|++|| +.++-+......+..++..+. ..+..||++|++.+.
T Consensus 231 ~iAraL~~~p~llllDE----------Pts~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHdl~~ 283 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDE----------PSSYLDVKQRLNAAQIIRSLL----APTKYVICVEHDLSV 283 (608)
T ss_dssp HHHHHHHSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHGGG----TTTCEEEEECSCHHH
T ss_pred HHHHHHHhCCCEEEEEC----------cccCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHH
Confidence 34445567899999999 555678888888889988775 234578888987643
No 212
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.35 E-value=9.6e-05 Score=65.05 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=27.0
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.++|.|+|||||||+|+.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 589999999999999999999999887643
No 213
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.34 E-value=0.00062 Score=65.75 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
|+.++.-++|.|+||+|||++|..+|... +.+.++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 67888889999999999999999998653 456666654
No 214
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.34 E-value=0.0019 Score=62.08 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=46.7
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh-------hh-------------hhhhHHHHHHHHHH
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY-------------VGEGARMVRELFQM 256 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~-------~~-------------~g~~~~~v~~~f~~ 256 (420)
.++..+++.||+|+||||++..+|..+ +..+..+++..... .| .++........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456678999999999999999999854 45555554432211 01 01122223344555
Q ss_pred HHhCCCcEEEecCccc
Q 014712 257 ARSKKACIVFFDEVDA 272 (420)
Q Consensus 257 a~~~~p~Il~iDEiD~ 272 (420)
+....|.+++||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 6667889999998643
No 215
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.33 E-value=0.00073 Score=69.52 Aligned_cols=75 Identities=15% Similarity=0.313 Sum_probs=51.2
Q ss_pred Cc-EEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC--CCCccccCcCcccEEEEccC
Q 014712 262 AC-IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLDPALLRPGRLDRKVEFGL 338 (420)
Q Consensus 262 p~-Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~al~r~gRfd~~i~~~~ 338 (420)
|. +|+|||+..+.... ..+....+..+.... ..-++.+|++|++|. .++..++. -|...|.|..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999997764310 123334444444332 234789999999986 57777776 7778889999
Q ss_pred CCHHHHHHHHH
Q 014712 339 PDLESRTQIFK 349 (420)
Q Consensus 339 Pd~~~R~~Il~ 349 (420)
.+..+...|+.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 99888887774
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.32 E-value=0.0014 Score=66.10 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=49.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh-------h-------------hhhhhHHHHHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------K-------------YVGEGARMVRELFQMA 257 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~-------~-------------~~g~~~~~v~~~f~~a 257 (420)
+|..+++.|++|+||||++..+|..+ |..+..+.+..+.. . ........++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46678999999999999999998754 55666665432211 0 0112344556677777
Q ss_pred HhCCCcEEEecCcccc
Q 014712 258 RSKKACIVFFDEVDAI 273 (420)
Q Consensus 258 ~~~~p~Il~iDEiD~l 273 (420)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777889999987544
No 217
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.28 E-value=0.00015 Score=62.89 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.8
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
..++|.|++||||||+++.+|..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999999887643
No 218
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.27 E-value=0.0008 Score=74.10 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=54.6
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHh-----cCCc--------------EEEEecchhhhhhhhhhHHHHHHHHHHH-HhC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANR-----TDAC--------------FIRVIGSELVQKYVGEGARMVRELFQMA-RSK 260 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~-----~~~~--------------~i~v~~~~l~~~~~g~~~~~v~~~f~~a-~~~ 260 (420)
.+..++|.||.|+||||++|.+|.- .|.. +-.+...+...............+...+ ...
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~ 740 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSAT 740 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhcc
Confidence 3456899999999999999999531 2321 1111111111111111111111111111 247
Q ss_pred CCcEEEecCcccccCCccCCCCCCCHHHHHHH-HHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l-~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.|++|+|||.-+ |.+......+ ..++..+. ...+..+|++|+..+
T Consensus 741 ~~sLlLLDEp~~----------GlD~~~~~~i~~~il~~l~---~~~g~~vl~aTH~~e 786 (934)
T 3thx_A 741 KDSLIIIDELGR----------GTSTYDGFGLAWAISEYIA---TKIGAFCMFATHFHE 786 (934)
T ss_dssp TTCEEEEESCSC----------SSCHHHHHHHHHHHHHHHH---HTTCCEEEEEESCGG
T ss_pred CCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH---hcCCCEEEEEcCcHH
Confidence 789999999643 3455444333 55666553 123567888998754
No 219
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.26 E-value=0.00024 Score=74.75 Aligned_cols=50 Identities=24% Similarity=0.237 Sum_probs=36.6
Q ss_pred HHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..|....|.++++||. .++-|......+.+++..+. . +..+|++|++++
T Consensus 494 iAral~~~p~illlDEp----------ts~LD~~~~~~i~~~l~~~~----~-~~tvi~itH~~~ 543 (595)
T 2yl4_A 494 IARALLKNPKILLLDEA----------TSALDAENEYLVQEALDRLM----D-GRTVLVIAHRLS 543 (595)
T ss_dssp HHHHHHHCCSEEEEECC----------CSSCCHHHHHHHHHHHHHHH----T-TSEEEEECCCHH
T ss_pred HHHHHHcCCCEEEEECc----------ccCCCHHHHHHHHHHHHHHh----c-CCEEEEEecCHH
Confidence 44444567889999994 45568888888888888764 2 356888898764
No 220
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.25 E-value=0.00012 Score=64.42 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=26.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
+..++|.|+|||||||+++.++..++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 346899999999999999999999986654
No 221
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.25 E-value=0.00037 Score=70.79 Aligned_cols=98 Identities=22% Similarity=0.283 Sum_probs=67.9
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC-------------CCCCCccccCcC
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-------------PDTLDPALLRPG 328 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~-------------~~~ld~al~r~g 328 (420)
|.|+||||+|.+ +.+.++.|+..+++ +..++ +|++||. +..+++.+++
T Consensus 296 ~~VliIDEa~~l-----------~~~a~~aLlk~lEe-----~~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s-- 356 (456)
T 2c9o_A 296 PGVLFVDEVHML-----------DIECFTYLHRALES-----SIAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLD-- 356 (456)
T ss_dssp ECEEEEESGGGC-----------BHHHHHHHHHHTTS-----TTCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT--
T ss_pred ceEEEEechhhc-----------CHHHHHHHHHHhhc-----cCCCE-EEEecCCccccccccccccccccCChhHHh--
Confidence 469999999998 45666666555442 23344 5545533 6788999999
Q ss_pred cccEEEEccCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHhhC-CCCcccccc
Q 014712 329 RLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLSRLC-PNSTGKHSP 379 (420)
Q Consensus 329 Rfd~~i~~~~Pd~~~R~~Il~~~~~~~~~~-~~v~l~~la~~t-~g~sgadl~ 379 (420)
||.. +.|++|+.++..++++..+...+.. .+..+..++..+ .|-.+..+.
T Consensus 357 R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 357 RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHH
Confidence 9955 6999999999999999887544432 222366778877 665444443
No 222
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.00075 Score=70.08 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+-.+..|....|.||++|| +.++-+...+..+.+++..+. . +..||++|++.+
T Consensus 146 rv~iA~aL~~~p~illlDE----------Pts~LD~~~~~~l~~~l~~l~----~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQ----------PSSYLDVRERMNMAKAIRELL----K-NKYVIVVDHDLI 198 (538)
T ss_dssp HHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHC----T-TSEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHh----C-CCEEEEEEeChH
Confidence 3445556678899999999 555678888888999998874 2 467888998764
No 223
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.24 E-value=0.0002 Score=64.00 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=28.0
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.+..++|.|+|||||||+|+.++..++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345689999999999999999999999876543
No 224
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.24 E-value=0.00016 Score=67.67 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=28.9
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
.++|.|||||||||+|+.+|..++..++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999888776543
No 225
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.23 E-value=0.00025 Score=63.46 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.9
Q ss_pred cceeeCCCCChHHHHHHHHHHhc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~ 226 (420)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999865
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.23 E-value=0.0011 Score=66.72 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=46.5
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh----------hhh----------hhhHHHHHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----------KYV----------GEGARMVRELFQMA 257 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~----------~~~----------g~~~~~v~~~f~~a 257 (420)
+|..+++.||+|+||||++..+|..+ +..+..+++..+.. ... ..........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678899999999999999999754 56665555432110 000 01222334455555
Q ss_pred HhCCCcEEEecCcccc
Q 014712 258 RSKKACIVFFDEVDAI 273 (420)
Q Consensus 258 ~~~~p~Il~iDEiD~l 273 (420)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567889999987554
No 227
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.23 E-value=0.00019 Score=65.17 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=28.0
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
++..++|.|+|||||||+++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 345789999999999999999999998766543
No 228
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.23 E-value=0.00021 Score=63.92 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=27.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
+..++|.|++|+||||+|+.++..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999876654
No 229
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.22 E-value=0.00017 Score=63.80 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
++..++|.|+|||||||+++.+|..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456799999999999999999999998776543
No 230
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.22 E-value=0.00017 Score=63.63 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=26.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
|..++|.|+|||||||+|+.++..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4568999999999999999999999876543
No 231
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.20 E-value=0.00057 Score=62.75 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=25.2
Q ss_pred cceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
.+++.|+||+||||++-.+|..+ |..++.++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 58999999999999999888764 555554444
No 232
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.20 E-value=0.00074 Score=71.13 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 251 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+-.+..|....|.+|++|| +.++-+......+.+++..+.. .+..||++|++.+
T Consensus 236 RvaIAraL~~~P~lLlLDE----------PTs~LD~~~~~~l~~~L~~l~~----~g~tvIivsHdl~ 289 (607)
T 3bk7_A 236 RVAIAAALLRKAHFYFFDE----------PSSYLDIRQRLKVARVIRRLAN----EGKAVLVVEHDLA 289 (607)
T ss_dssp HHHHHHHHHSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHH
T ss_pred HHHHHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEecChH
Confidence 4445556678899999999 5556788888889988887741 2567888998754
No 233
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.19 E-value=0.00021 Score=61.95 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=26.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
..++|.|+|||||||+++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987654
No 234
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.19 E-value=0.00023 Score=63.76 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=28.9
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
.++..+.|.||+|+||||+++.++..+|.. .+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 346679999999999999999999998654 4455444
No 235
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.19 E-value=0.00015 Score=63.54 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=23.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
+..++|.|+|||||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999998876
No 236
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.18 E-value=0.00019 Score=65.69 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=31.0
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 239 (420)
+..++.++|.||||+||+|.|+.++..++.+. ++..+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 35567789999999999999999999998665 4444444
No 237
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.18 E-value=0.0002 Score=65.47 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=27.8
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
..+..++|.|+|||||||+++.+|..++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999998766543
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.17 E-value=0.00022 Score=61.44 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=25.2
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.++|.|||||||||+|+.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888876654
No 239
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.17 E-value=0.00015 Score=63.20 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=23.2
Q ss_pred CcceeeCCCCChHHHHHHHHHH-hcCCcE
Q 014712 203 KGVLCYGPPGTGKTLLARAVAN-RTDACF 230 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~-~~~~~~ 230 (420)
..++|.|+||+||||+|+.++. ..+..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4588999999999999999998 455433
No 240
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.16 E-value=0.00051 Score=78.46 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.8
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
++.++++..+.|.||+|+|||||++++++..
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456778889999999999999999999865
No 241
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.15 E-value=0.00078 Score=67.15 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=36.1
Q ss_pred HHHHHhCCC--cEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 254 FQMARSKKA--CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 254 f~~a~~~~p--~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
+..+....| .+|+|||.+. +-+......+.++|..+. .+..||++|+.++
T Consensus 306 lA~~l~~~~~~~~LlLDEpt~----------~LD~~~~~~l~~~L~~l~-----~~~~vi~itH~~~ 357 (415)
T 4aby_A 306 LAVSTVLGADTPSVVFDEVDA----------GIGGAAAIAVAEQLSRLA-----DTRQVLVVTHLAQ 357 (415)
T ss_dssp HHHHHHHCCSSSEEEESSTTT----------TCCHHHHHHHHHHHHHHT-----TTSEEEEECSCHH
T ss_pred HHHHHHhCCCCCEEEEECCCC----------CCCHHHHHHHHHHHHHHh-----CCCEEEEEeCcHH
Confidence 333444567 8999999754 457888899999988774 2456888888754
No 242
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.15 E-value=0.00023 Score=62.05 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=27.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
+..++|.||+|+||||+++.++..+|..+ +++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 44688999999999999999999887554 444443
No 243
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.13 E-value=0.00018 Score=63.89 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=26.9
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
+..++|.|+|||||||+++.++..++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4579999999999999999999999866543
No 244
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.13 E-value=0.00021 Score=62.79 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.5
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
+..++|.|+|||||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999999886
No 245
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.13 E-value=0.00073 Score=70.70 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014712 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (420)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~ 234 (420)
-.++|++.+..++. ...++++||||||||+++.+++..+ +..++.+.
T Consensus 190 L~~~Q~~Av~~~~~----------------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 190 LSEEQASVLDQLAG----------------HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CCHHHHHHHHHHTT----------------CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHh----------------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 34666666665542 3468999999999999999998754 55555443
No 246
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.13 E-value=0.00025 Score=62.33 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=27.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
+..++|.|+|||||||+++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45689999999999999999999998665543
No 247
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.00028 Score=61.80 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=31.7
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l 238 (420)
++..+.|.|++||||||+++.++..+ |.+++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45568899999999999999999987 888888775443
No 248
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.11 E-value=0.00086 Score=76.62 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCC
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~l 320 (420)
.|-.+.+|....|.||++||. +++-|......+.+.+.... .+..+|+.|++.+.+
T Consensus 1178 Qrv~iARal~~~p~iLiLDEp----------Ts~lD~~~~~~i~~~l~~~~-----~~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEA----------TSALDTESEKVVQEALDKAR-----EGRTCIVIAHRLSTI 1233 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESC----------SSSCCHHHHHHHHHHHHHHS-----SSSCEEEECSCTTGG
T ss_pred HHHHHHHHHHcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHhC-----CCCEEEEEecCHHHH
Confidence 344555566678899999994 44568888888888887653 245688888887654
No 249
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.10 E-value=0.0002 Score=66.42 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=28.7
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.+|..++|.||||+||||+|+.++..++.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3566799999999999999999999998765543
No 250
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.08 E-value=0.0003 Score=63.51 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=26.1
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.++|.|||||||||+|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998776544
No 251
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.08 E-value=0.00032 Score=62.75 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l 238 (420)
.++..+.|.||+||||||++++++..+ |...+.+++..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456678899999999999999999987 544445665443
No 252
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.08 E-value=0.001 Score=63.54 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.7
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.+.++..+.|.||+|+|||||++++++..
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345677779999999999999999999854
No 253
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.08 E-value=0.00035 Score=64.14 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=27.6
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
+..++|.|+|||||||+++.+|..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999766543
No 254
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.07 E-value=0.00023 Score=63.58 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
+..++|.|++||||||+++.++..++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 34688999999999999999999998765543
No 255
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.07 E-value=0.00032 Score=63.29 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=26.1
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.++|.|||||||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998776544
No 256
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.06 E-value=0.002 Score=67.76 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=66.3
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcC---------CcEEEEec----------chhhhhh--hh-h-----------
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIG----------SELVQKY--VG-E----------- 245 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~---------~~~i~v~~----------~~l~~~~--~g-~----------- 245 (420)
+.++..+.|.||+|+|||||++++++... ..+-++.- .+..... .. .
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 34667789999999999999999998531 11111110 0110000 00 0
Q ss_pred ---------------hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEE
Q 014712 246 ---------------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (420)
Q Consensus 246 ---------------~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 310 (420)
+....+-.+..|....|.+|++|| +.++-|...+..+.+++..+. ...+..|
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~tv 525 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLM---EKNEKTA 525 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHH---HHTTCEE
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH---HhCCCEE
Confidence 111122334445567899999999 566678889999999988763 1234568
Q ss_pred EEEeCCCC
Q 014712 311 LMATNRPD 318 (420)
Q Consensus 311 I~ttn~~~ 318 (420)
|++|+..+
T Consensus 526 i~vsHd~~ 533 (607)
T 3bk7_A 526 LVVEHDVL 533 (607)
T ss_dssp EEECSCHH
T ss_pred EEEeCCHH
Confidence 88888654
No 257
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.06 E-value=0.00027 Score=64.24 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=27.1
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
..++|.|+|||||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999998776544
No 258
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.06 E-value=0.00035 Score=60.24 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=26.0
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
.++|.|++||||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999987664
No 259
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00027 Score=64.26 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
.+..++|.|||||||||+++.+|..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3567999999999999999999999986544
No 260
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.05 E-value=0.0013 Score=67.65 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=31.1
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~ 235 (420)
|+.++.-++|.|+||+|||++|..+|... +.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 67777889999999999999999998754 456777664
No 261
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0022 Score=67.52 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 250 v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
.|-.+..|....|.+|++|| +.++-|...+..+.+++..+. ...+..||++|+..+
T Consensus 474 QRv~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~ll~~l~---~~~g~tviivtHdl~ 529 (608)
T 3j16_B 474 QRVAIVLALGIPADIYLIDE----------PSAYLDSEQRIICSKVIRRFI---LHNKKTAFIVEHDFI 529 (608)
T ss_dssp HHHHHHHHTTSCCSEEEECC----------TTTTCCHHHHHHHHHHHHHHH---HHHTCEEEEECSCHH
T ss_pred HHHHHHHHHHhCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 34455666678899999999 566778888888888887753 123456888888754
No 262
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.03 E-value=0.00099 Score=71.03 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCC---cEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 251 RELFQMARSKKA---CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 251 ~~~f~~a~~~~p---~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|-.+..|....| .+|++|| +.++-+......+.+++..+. ..+..||++|++.+
T Consensus 551 rv~iAraL~~~p~~p~llllDE----------Pt~~LD~~~~~~i~~~l~~l~----~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 551 RVKLAAELHRRSNGRTLYILDE----------PTTGLHVDDIARLLDVLHRLV----DNGDTVLVIEHNLD 607 (670)
T ss_dssp HHHHHHHHHSCCCSCEEEEEES----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHH
T ss_pred HHHHHHHHhhCCCCCcEEEEeC----------CCCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 344455554444 6999999 556678889999999988874 23567899999764
No 263
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.01 E-value=0.00043 Score=62.78 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=26.3
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
..+.|.||+||||||+++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999876553
No 264
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.01 E-value=0.00046 Score=61.46 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=28.6
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc-CCcEEEEe
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVI 234 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~-~~~~i~v~ 234 (420)
.+..+.|.|++||||||+++.++..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45678999999999999999999998 56676654
No 265
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.99 E-value=0.0034 Score=69.51 Aligned_cols=43 Identities=30% Similarity=0.269 Sum_probs=35.7
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHH
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~ 224 (420)
.+|.+..++.|.+++... ...+-+.|+|+.|+|||+||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 389999999999988531 2345789999999999999999986
No 266
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.99 E-value=0.00041 Score=64.17 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=26.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
.+..+.|.||+|+||||+++.++..++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3567999999999999999999998886544
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.98 E-value=0.00041 Score=62.88 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=27.3
Q ss_pred ceeeCCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014712 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 239 (420)
++|.||||+||+|.|+.+|..++.+.+ +..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 688999999999999999999987654 444444
No 268
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.98 E-value=0.0013 Score=72.42 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=63.8
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHh-c-C------CcEEEEecc-----------hhhh-hh-------------hh
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANR-T-D------ACFIRVIGS-----------ELVQ-KY-------------VG 244 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~-~-~------~~~i~v~~~-----------~l~~-~~-------------~g 244 (420)
.+.++..+.|.||+|+|||||++++++- . + ....++... +.+. .. .|
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 4556778999999999999999999941 1 1 111111100 0000 00 00
Q ss_pred -----------h--hHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEE
Q 014712 245 -----------E--GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (420)
Q Consensus 245 -----------~--~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 311 (420)
+ +....+-.+..+....|.+|++|| +.++-+......+.+++.. . +..||
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE----------PTs~LD~~~~~~l~~~L~~-~------g~tvI 599 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE----------PTNHLDTVNVAWLVNYLNT-C------GITSI 599 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES----------TTTTCCHHHHHHHHHHHHH-S------CSEEE
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC----------CccCCCHHHHHHHHHHHHh-C------CCEEE
Confidence 0 111223344455667899999999 5556788888888888876 1 45677
Q ss_pred EEeCCCC
Q 014712 312 MATNRPD 318 (420)
Q Consensus 312 ~ttn~~~ 318 (420)
++|++.+
T Consensus 600 ivSHdl~ 606 (986)
T 2iw3_A 600 TISHDSV 606 (986)
T ss_dssp EECSCHH
T ss_pred EEECCHH
Confidence 7787643
No 269
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.97 E-value=0.0024 Score=66.31 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=66.6
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC---------CcEEEEecc----------hhhhhh------------------
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIGS----------ELVQKY------------------ 242 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~---------~~~i~v~~~----------~l~~~~------------------ 242 (420)
.++..+.|.||.|+|||||+++++.... ..+-++.-. +.....
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 4667789999999999999999998542 111111110 000000
Q ss_pred ---------hh--hhHHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEE
Q 014712 243 ---------VG--EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (420)
Q Consensus 243 ---------~g--~~~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 311 (420)
++ .+....+-.+..+....|.+|++|| +.++-|...+..+.+++..+.. ..+..||
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE----------Pt~~LD~~~~~~i~~~l~~l~~---~~g~tvi 456 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLME---KNEKTAL 456 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH---HHTCEEE
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hCCCEEE
Confidence 00 0112223344556667899999999 5667789999999998887631 1245688
Q ss_pred EEeCCCC
Q 014712 312 MATNRPD 318 (420)
Q Consensus 312 ~ttn~~~ 318 (420)
++|+..+
T Consensus 457 ~vsHd~~ 463 (538)
T 1yqt_A 457 VVEHDVL 463 (538)
T ss_dssp EECSCHH
T ss_pred EEeCCHH
Confidence 8888654
No 270
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.97 E-value=0.0017 Score=70.43 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=41.2
Q ss_pred cCCCCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 161 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+..+|++++-.....+.+.+.-..|......--...+.....+++.||+|+|||+++..++..
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34556788887777777776665555543322111112233457999999999999977777543
No 271
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.96 E-value=0.0016 Score=60.09 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=29.8
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEecc-hhhhh
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELVQK 241 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~-~l~~~ 241 (420)
.++++||+|+|||.++.+++...+...+.+... ++...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q 148 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQ 148 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHH
Confidence 489999999999999999998887766666544 44433
No 272
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.94 E-value=0.00034 Score=65.38 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
+..+.|.|++|+||||+++.+|..++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 56799999999999999999999999877653
No 273
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.91 E-value=0.0046 Score=54.83 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=16.0
Q ss_pred CCcceeeCCCCChHHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lak 220 (420)
.+.+++.+|+|+|||..+-
T Consensus 38 ~~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4679999999999998643
No 274
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.90 E-value=0.0018 Score=65.58 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=31.5
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
|+.++.-++|.|+||+|||++|..+|... +.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67888889999999999999999888754 567777654
No 275
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.89 E-value=0.00046 Score=60.60 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=26.2
Q ss_pred cceeeCCCCChHHHHHHHHHHhcC---CcEEEEecch
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSE 237 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~ 237 (420)
.++|.|+|||||||+++.++..++ ..+..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 478999999999999999999875 2355554333
No 276
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.89 E-value=0.00066 Score=59.73 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=27.2
Q ss_pred cceeeCCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~---~~~~i~v~ 234 (420)
.+.|.|++||||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 88877664
No 277
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.88 E-value=0.00046 Score=66.86 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=30.0
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
..++|.||+|||||++++.+|..++..++.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4689999999999999999999999888877643
No 278
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.00054 Score=60.83 Aligned_cols=29 Identities=14% Similarity=0.417 Sum_probs=25.7
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
.+.|.|++||||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987654
No 279
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.85 E-value=0.0021 Score=62.65 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=31.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
|+.++.-++|.|+||+|||++|..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 67888889999999999999999998753 566666654
No 280
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.85 E-value=0.00057 Score=61.76 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=26.1
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.++|.|+|||||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998776544
No 281
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.84 E-value=0.0031 Score=68.45 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHh
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
++..++|.||.|+||||++|.++.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4456889999999999999999863
No 282
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.83 E-value=0.0016 Score=58.65 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC----CcEEEEecchh
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSEL 238 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~----~~~i~v~~~~l 238 (420)
.++..++|.|++|+||||+++.++..++ .+++.+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4556789999999999999999998764 55777765443
No 283
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.81 E-value=0.00075 Score=62.35 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=26.9
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
+..+.|.||+||||||+++.+|..++..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999999999999999876543
No 284
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.80 E-value=0.00048 Score=61.53 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.8
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.+.|.|++||||||+++.+++ +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 87665543
No 285
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.79 E-value=0.00073 Score=61.63 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=25.0
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
.++|.|+|||||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999865443
No 286
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.77 E-value=0.00091 Score=59.04 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=25.8
Q ss_pred ceeeCCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014712 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~---~~~~i~v~ 234 (420)
+.|.|++||||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999988 88877554
No 287
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.77 E-value=0.00052 Score=67.26 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=25.9
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
+++|+|++|+||||+++++|..++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 58999999999999999999998877744
No 288
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.76 E-value=0.00031 Score=63.03 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=24.8
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
.+..++|.|++||||||+++.++..++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45678999999999999999999986543
No 289
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.75 E-value=0.00081 Score=60.29 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
.+.++..++|.||||+||||+++.++..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356777899999999999999999999874
No 290
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.74 E-value=0.00067 Score=60.43 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=24.2
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++..+.|.||+|+||||+++.++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456778999999999999999999876
No 291
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.74 E-value=0.003 Score=63.74 Aligned_cols=97 Identities=26% Similarity=0.329 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCcccccCCccCCCCCCCH---HHHHHHHHHHHHhcC-----CcCCCCeEEEEEe----
Q 014712 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLDG-----FDARGNIKVLMAT---- 314 (420)
Q Consensus 247 ~~~v~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~l~~-----~~~~~~v~vI~tt---- 314 (420)
....+.....|..+ .++++||||+++....+ .+++. .+|++|+++++--.. -....++++|+|+
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 44555666655333 39999999999765321 22332 366777777653110 0135678899987
Q ss_pred CCCCCCCccccCcCcccEEEEccCCCHHHHHHHHH
Q 014712 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (420)
Q Consensus 315 n~~~~ld~al~r~gRfd~~i~~~~Pd~~~R~~Il~ 349 (420)
+.+..+-|.|+. ||..++.|+.++.++..+|+.
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 244445588888 999999999999999999983
No 292
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.74 E-value=0.0089 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=19.9
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
+.+++++|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999988877764
No 293
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.72 E-value=0.00074 Score=60.42 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.7
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
.+.|.||+||||||+++.++. +|.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 478999999999999999998 777665
No 294
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.72 E-value=0.0063 Score=67.72 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=55.3
Q ss_pred CCcceeeCCCCChHHHHHHHHHH-----hcCCcE--------------EEEecchhhhhhhhh-hHHHHHHHHHHHHhCC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVAN-----RTDACF--------------IRVIGSELVQKYVGE-GARMVRELFQMARSKK 261 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~-----~~~~~~--------------i~v~~~~l~~~~~g~-~~~~v~~~f~~a~~~~ 261 (420)
+..++|+||.|+||||++|.++- ..|..+ ..+...+........ ...+.+-....+....
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~ 868 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATA 868 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCC
Confidence 46789999999999999999843 123111 111111111100000 1111122233344578
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHH-HHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEV-QRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~-~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|++|+|||+.+ |.+... ...+..++..+. ...+..+|++|+..+
T Consensus 869 ~sLlLLDEp~~----------Gtd~~dg~~~~~~il~~L~---~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 869 HSLVLVDELGR----------GTATFDGTAIANAVVKELA---ETIKCRTLFSTHYHS 913 (1022)
T ss_dssp TCEEEEECTTT----------TSCHHHHHHHHHHHHHHHH---HTSCCEEEEECCCHH
T ss_pred CcEEEEECCCC----------CCChHHHHHHHHHHHHHHH---hcCCCEEEEEeCCHH
Confidence 89999999744 234332 344556666653 123567899998753
No 295
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.72 E-value=0.002 Score=57.75 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCcceeeCCCCChHH-HHHHHHHHh--cCCcEEEEe
Q 014712 202 PKGVLCYGPPGTGKT-LLARAVANR--TDACFIRVI 234 (420)
Q Consensus 202 ~~~vLL~GppGtGKT-~Lakala~~--~~~~~i~v~ 234 (420)
.+-.++|||.|+||| +|++++.+. .+..++.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 445789999999999 899998774 366666665
No 296
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.72 E-value=0.0027 Score=63.69 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=52.0
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC---CcEEEEecc-hhh
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGS-ELV 239 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~-~l~ 239 (420)
..++++++-.......++.++. .+...++|.||+|+||||+++++++.+. ..++.+.-+ ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~--------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 3456666655555555555432 2334588999999999999999999763 233333211 110
Q ss_pred h-----hhhh-hhHHHHHHHHHHHHhCCCcEEEecCc
Q 014712 240 Q-----KYVG-EGARMVRELFQMARSKKACIVFFDEV 270 (420)
Q Consensus 240 ~-----~~~g-~~~~~v~~~f~~a~~~~p~Il~iDEi 270 (420)
. ..+. .........+..+....|.++++.|+
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 0 0001 11112233344445567889999885
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.72 E-value=0.00083 Score=59.06 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
+++.+.|.||+|+|||||++.++....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345689999999999999999998653
No 298
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.71 E-value=0.0035 Score=66.76 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCc--EEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 251 RELFQMARSKKAC--IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 251 ~~~f~~a~~~~p~--Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|-.+..|....|. +|++|| +.++-+...+..+.+++..+. ..+..||++|+..+
T Consensus 210 Rv~iArAL~~~p~~~lLlLDE----------PtsgLD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 210 RIRLATQIGSRLTGVLYVLDE----------PSIGLHQRDNDRLIATLKSMR----DLGNTLIVVEHDED 265 (670)
T ss_dssp HHHHHHHHHTCCCSCEEEEEC----------TTTTCCGGGHHHHHHHHHHHH----HTTCEEEEECCCHH
T ss_pred HHHHHHHHhhCCCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHH
Confidence 3444555556776 999999 556678888888888888774 23567888998754
No 299
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.70 E-value=0.00038 Score=62.46 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=24.4
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
..+..++|.|++||||||+++.++..++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999999764
No 300
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.70 E-value=0.00089 Score=59.66 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=26.6
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
.+.|.|++||||||+++.+|..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999777643
No 301
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.70 E-value=0.00081 Score=59.87 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=24.2
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
+.++.-+.|.||+|+|||||++.++....
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34566788999999999999999999753
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.70 E-value=0.00072 Score=60.37 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=24.5
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
+..++|.|+|||||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468899999999999999999988763
No 303
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.68 E-value=0.0099 Score=60.70 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++..+.|.|++|+||||+++.+|..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4456678899999999999999999864
No 304
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.68 E-value=0.0011 Score=61.84 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=26.8
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
++..+.|.||+||||||+++.+|..+|..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3456889999999999999999999987654
No 305
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.66 E-value=0.031 Score=50.02 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=34.7
Q ss_pred CccccccccHHHHHHHHHhhh-cccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHH
Q 014712 165 VTYNDVGGCKEQIEKMREVVE-LPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~-~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~ 224 (420)
.+|++++-.....+.+.+.-- .|..++...-.. +...+.+++.+|+|+|||..+-..+-
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ-AILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCchhhhhhHHHH
Confidence 468888777777777766321 111111111110 11246799999999999987665554
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.65 E-value=0.00088 Score=59.44 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=27.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
+..+.|.|++||||||+++.++.. |.+++ +...+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHH
Confidence 446889999999999999999998 76654 44444
No 307
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.63 E-value=0.0008 Score=65.49 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 237 (420)
++.++|.||+|||||+|+..+|.+++..++..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 346899999999999999999999998887776543
No 308
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.63 E-value=0.0011 Score=59.42 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.6
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
.+.|+|++||||||+++.++..+|.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999999998877654
No 309
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.60 E-value=0.013 Score=52.67 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhc---CCCCCCcceeeCCCCChHHHHH
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKL---GIDPPKGVLCYGPPGTGKTLLA 219 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~---gi~~~~~vLL~GppGtGKT~La 219 (420)
+..+|++++-.+...+.+.+.- ...+.-++.. .+...+.+++.+|+|+|||..+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 3457888877777777776542 1111111111 1123467999999999999873
No 310
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.59 E-value=0.0011 Score=59.78 Aligned_cols=30 Identities=30% Similarity=0.262 Sum_probs=25.1
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
+..+.|.|++||||||+++.++. +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 44688999999999999999998 7766543
No 311
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.58 E-value=0.0013 Score=59.18 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456688999999999999999999764
No 312
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.58 E-value=0.0011 Score=63.84 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=29.3
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
+..++|.||+|+|||+||..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999887777654
No 313
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.57 E-value=0.0041 Score=55.53 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=40.1
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecc--------hhhhhhhhhh-----HHHHHHHHHHHHhCCCcEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS--------ELVQKYVGEG-----ARMVRELFQMARSKKACIV 265 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~--------~l~~~~~g~~-----~~~v~~~f~~a~~~~p~Il 265 (420)
.+-.+++||.|+|||+.+-.++..+ +..++.+... .+.+ ..|.. -....+++..+. ....+|
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~-~~~dvV 85 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFE-EDTEVI 85 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCC-TTCSEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHh-ccCCEE
Confidence 3457889999999999888887764 5555444311 0000 01100 000123444332 235799
Q ss_pred EecCcccc
Q 014712 266 FFDEVDAI 273 (420)
Q Consensus 266 ~iDEiD~l 273 (420)
+|||+..+
T Consensus 86 iIDEaqfl 93 (191)
T 1xx6_A 86 AIDEVQFF 93 (191)
T ss_dssp EECSGGGS
T ss_pred EEECCCCC
Confidence 99999886
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.57 E-value=0.00072 Score=60.63 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=25.5
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc-CCcEE
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT-DACFI 231 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~-~~~~i 231 (420)
.++..+.|.|++|+||||+++.+++.+ +..++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 344568899999999999999999987 54433
No 315
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.0017 Score=57.15 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=28.8
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE 237 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~ 237 (420)
.++..++|.|++|+||||+++.++..+ +..+..+++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 345568899999999999999999876 34455555433
No 316
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.53 E-value=0.0012 Score=60.01 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=24.0
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.+.++..+.|.||+|+|||||++.+++..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345667789999999999999999999976
No 317
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.52 E-value=0.0012 Score=59.21 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=22.6
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
++++.+.|.||+|+|||||++.+++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3566799999999999999999998653
No 318
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.52 E-value=0.0017 Score=60.26 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=30.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCc--------EEEEecchhh
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDAC--------FIRVIGSELV 239 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~--------~i~v~~~~l~ 239 (420)
.+..|.|.|++||||||+|+.++..++.+ ...+++.++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34568899999999999999999998876 3356665554
No 319
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.50 E-value=0.0017 Score=58.56 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=27.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
+..+.|.|++|||||++++.++..+|.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3468999999999999999999999977654
No 320
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0017 Score=59.70 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
.++..+.|.|++||||||+++.++..+|.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 445568899999999999999999999976643
No 321
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.49 E-value=0.0014 Score=58.99 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
.++..+.|.||+|+|||||+++++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556688999999999999999999764
No 322
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.47 E-value=0.0014 Score=56.80 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=26.0
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.+.++..+.|.||.|+|||||++++++.+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 355666779999999999999999999976
No 323
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.46 E-value=0.015 Score=51.40 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCcceeeCCCCChHHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lak 220 (420)
.+.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 4679999999999997554
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.46 E-value=0.0017 Score=57.15 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.7
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 238 (420)
.++|.||+|+||||+++.++...+. .+.+++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244555443
No 325
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.45 E-value=0.00094 Score=68.86 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=45.5
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecch-hhhh---h--------hhhhHHHHHHHHHHHHhCCCcEEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSE-LVQK---Y--------VGEGARMVRELFQMARSKKACIVF 266 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~-l~~~---~--------~g~~~~~v~~~f~~a~~~~p~Il~ 266 (420)
.+.++++.||+|+||||+++++++... ...+.+.... +... + .+.....+..+...+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 456799999999999999999998763 3455554432 2100 0 011111234445555667899999
Q ss_pred ecCcc
Q 014712 267 FDEVD 271 (420)
Q Consensus 267 iDEiD 271 (420)
+.|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99973
No 326
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.43 E-value=0.01 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.2
Q ss_pred CCcceeeCCCCChHHHHHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLARAVA 223 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala 223 (420)
+..+++.||+|||||+++....
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 5679999999999998766554
No 327
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.41 E-value=0.014 Score=56.17 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=34.1
Q ss_pred CccccccccHHHHHHHHHhhhc-ccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHH
Q 014712 165 VTYNDVGGCKEQIEKMREVVEL-PMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~-~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~ 224 (420)
.+|++++-.+...+.|++.--. |..++...-..-+...+.+++.+|+|+|||+.+-..+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 4677777667666666654221 11111111111112236899999999999998665544
No 328
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.40 E-value=0.0025 Score=63.91 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
.+.-++|.|+||+||||+|+.++..++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 3556889999999999999999999876544
No 329
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.40 E-value=0.0071 Score=66.68 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=25.3
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.+.++..+.|.||+|+|||||++.+++..
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345667789999999999999999999753
No 330
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.40 E-value=0.0023 Score=57.00 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.5
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDA 228 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~ 228 (420)
+.++|.||+|+|||||++.+..+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45899999999999999999887543
No 331
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.39 E-value=0.0016 Score=62.68 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=28.5
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 236 (420)
+-++|.||+|+|||+|+..+|..++..++..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999988777665543
No 332
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.39 E-value=0.0065 Score=58.04 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGS 236 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~ 236 (420)
++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46678899999999999999998754 4456655543
No 333
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.39 E-value=0.0049 Score=55.01 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=27.8
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
.++..+.|.|++|+||||+++.++..+ +..++..+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 345568899999999999999999865 555555543
No 334
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.38 E-value=0.0085 Score=54.52 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHH
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Lak 220 (420)
..+|++++-.....+.+.+.- ...+.-++... +...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 346888877777777776532 11221122111 1234679999999999998543
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.36 E-value=0.0018 Score=57.09 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.9
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcC
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
+.+.|.||+|+|||||++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998653
No 336
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.33 E-value=0.013 Score=61.97 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=34.4
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHh---cCCcEEEEec
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 235 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~---~~~~~i~v~~ 235 (420)
.|-+-.-+++|++.+..++.. ..-.|++||||||||+++-.+... .+..++.+..
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cccCCCCCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 333334577888888777643 124789999999999755444332 2555554443
No 337
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.31 E-value=0.0062 Score=58.85 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=28.8
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
..++..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4566779999999999999999998854 555555544
No 338
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.30 E-value=0.003 Score=56.80 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
.+++.+.|.||+|+|||||+++++....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4556789999999999999999998764
No 339
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.29 E-value=0.0015 Score=58.57 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
++..+.|.||+|+|||||++.+++.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999876
No 340
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.28 E-value=0.017 Score=56.03 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=39.0
Q ss_pred hCCCcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEcc
Q 014712 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~ 337 (420)
...|.+|++||. ..+-++.....+..++..+.. . +..||++|+.++ +.. .+|+++.+.
T Consensus 270 ~~~p~~lllDEp----------~~~LD~~~~~~l~~~l~~~~~---~-~~~vi~~sH~~~-----~~~--~~d~~~~l~ 327 (339)
T 3qkt_A 270 AGEISLLILDEP----------TPYLDEERRRKLITIMERYLK---K-IPQVILVSHDEE-----LKD--AADHVIRIS 327 (339)
T ss_dssp TTTTCEEEEECC----------CTTCCHHHHHHHHHHHHHTGG---G-SSEEEEEESCGG-----GGG--GCSEEEEEE
T ss_pred cCCCCEEEEECC----------CCCCCHHHHHHHHHHHHHHHh---c-CCEEEEEEChHH-----HHH--hCCEEEEEE
Confidence 357889999994 445688888888888877631 2 336777888643 233 456666654
No 341
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.28 E-value=0.0021 Score=61.76 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=28.7
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
.+.++++..+.|+||+|+|||||++++++.+...
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 3467788889999999999999999999987433
No 342
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.28 E-value=0.002 Score=57.89 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
+.++..+.|.||+|+|||||+++++....
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45667789999999999999999999763
No 343
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.25 E-value=0.0018 Score=61.50 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=23.8
Q ss_pred CcceeeCCCCChHHHHHHHHHHhc-CCcEE
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRT-DACFI 231 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~-~~~~i 231 (420)
..++|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 458999999999999999999864 54443
No 344
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.24 E-value=0.031 Score=53.23 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=43.5
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhh-------hhh--------h-----hhhHHHHHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV-------QKY--------V-----GEGARMVRELFQMA 257 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~-------~~~--------~-----g~~~~~v~~~f~~a 257 (420)
++..+.+.|++|+||||++..+|..+ +..+..+++.-.. ..+ . .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45568888999999999999999854 4555555432110 000 0 01123335556666
Q ss_pred HhCCCcEEEecCc
Q 014712 258 RSKKACIVFFDEV 270 (420)
Q Consensus 258 ~~~~p~Il~iDEi 270 (420)
....+.+|+||+-
T Consensus 177 ~~~~~D~viiDtp 189 (295)
T 1ls1_A 177 RLEARDLILVDTA 189 (295)
T ss_dssp HHHTCCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 5566789999985
No 345
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.23 E-value=0.0021 Score=62.60 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=27.9
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
..++|.||+|+|||++|+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 368899999999999999999999876665543
No 346
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.22 E-value=0.002 Score=59.53 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=25.3
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
+.++.-+.|.||+|+||||+++.++..+|..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4455568899999999999999999987643
No 347
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.19 E-value=0.014 Score=62.42 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCccccccccHHHHHHHHHh-hhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHH
Q 014712 164 DVTYNDVGGCKEQIEKMREV-VELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAV 222 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~-i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakal 222 (420)
..+|++++-.+...+.+.+. +..+...+...-...+.....+++.||+|+|||+.+-..
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH
Confidence 35677776555555555442 112222222222223455788999999999999988433
No 348
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.17 E-value=0.0027 Score=60.90 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=24.7
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
.+.++..+.|.||+|+||||+++.+|..+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566678999999999999999999864
No 349
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.15 E-value=0.0025 Score=60.44 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
+..|.|.|++||||||+|+.++ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 3458899999999999999999 57766543
No 350
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.15 E-value=0.019 Score=52.43 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=32.4
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHH
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Lak 220 (420)
+..+|++++-.....+.+...- ...+..++... +...+.+++.+|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYG---FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 3457888876666666665432 11111111111 1234679999999999998643
No 351
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.15 E-value=0.014 Score=52.47 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=29.9
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHHH
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARA 221 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Laka 221 (420)
.+|++++-....++.+.+.- ...+..++.-. +...+.+++.+|+|+|||..+-.
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLR---FYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 35777765666666665431 11111111111 11236799999999999986433
No 352
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.13 E-value=0.0027 Score=57.95 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=24.3
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
.++++..+.|.||+|+|||||+++++....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356677899999999999999999998754
No 353
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.10 E-value=0.0073 Score=58.57 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
.++..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999864
No 354
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.09 E-value=0.0036 Score=61.51 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=47.5
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhcC--CcEEEEecc-hhhhh-------hhh-h-------hHHHHHHHHHHHHh
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGS-ELVQK-------YVG-E-------GARMVRELFQMARS 259 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~-~l~~~-------~~g-~-------~~~~v~~~f~~a~~ 259 (420)
.+.+...++|.||+|+|||||++++++... ...+.+.+. ++... ++. . ....++..+..+..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~ 250 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR 250 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHh
Confidence 445677899999999999999999999753 334444432 11100 111 0 11224566666777
Q ss_pred CCCcEEEecCcc
Q 014712 260 KKACIVFFDEVD 271 (420)
Q Consensus 260 ~~p~Il~iDEiD 271 (420)
..|..++++|+.
T Consensus 251 ~~pd~~l~~e~r 262 (361)
T 2gza_A 251 MKPTRILLAELR 262 (361)
T ss_dssp SCCSEEEESCCC
T ss_pred cCCCEEEEcCch
Confidence 789999999964
No 355
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.08 E-value=0.0024 Score=63.63 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=28.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
++-++|.||+|+|||+|+..+|..++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3457899999999999999999998877665543
No 356
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.07 E-value=0.008 Score=63.26 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=32.1
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l 238 (420)
.+..++|.|.+|+||||+|++++..+ +.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34568999999999999999999998 889988875443
No 357
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.04 E-value=0.002 Score=57.91 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=26.3
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEe
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 234 (420)
+++++|.||+|+|||+||..++.... .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46799999999999999999998865 554443
No 358
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.03 E-value=0.0016 Score=59.46 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=18.6
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHH-Hhc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVA-NRT 226 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala-~~~ 226 (420)
.+.++.-+.|.||+|+||||+++.++ ...
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34556678999999999999999999 765
No 359
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.01 E-value=0.011 Score=53.58 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=30.6
Q ss_pred CCCCcccc-ccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHH
Q 014712 162 KPDVTYND-VGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 162 ~~~~~~~~-i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Lak 220 (420)
.|..+|.+ ++-.....+.+.+.- ...+.-++... +...+.+++.+|+|+|||..+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVG---ILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 34456777 344455555555431 11221122111 1234679999999999998644
No 360
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.99 E-value=0.0035 Score=61.62 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=24.9
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
.+.++..+.|.||+|+||||+++.+|..+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34566779999999999999999999864
No 361
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.98 E-value=0.024 Score=51.44 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=31.8
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHH
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLA 219 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~La 219 (420)
+..+|++++-.....+.+.+.- ...+.-++... +...+.+++.+|+|+|||..+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAG---FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 4457888876677777666532 11111111111 123467999999999999864
No 362
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.98 E-value=0.012 Score=56.15 Aligned_cols=71 Identities=20% Similarity=0.096 Sum_probs=45.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhhh-------hhh-------------hhhHHHHHHHHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KYV-------------GEGARMVRELFQMAR 258 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~-------~~~-------------g~~~~~v~~~f~~a~ 258 (420)
+..+++.|++|+||||++..+|..+ +..+..+++.-... .+. ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5568889999999999999999755 55666665431110 000 012233445666666
Q ss_pred hCCCcEEEecCccc
Q 014712 259 SKKACIVFFDEVDA 272 (420)
Q Consensus 259 ~~~p~Il~iDEiD~ 272 (420)
.....+++||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 56678999997443
No 363
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.97 E-value=0.0087 Score=55.33 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=33.4
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHH
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Lak 220 (420)
+..+|++++-.....+.+.+.-- ..+..++... +...+.+++.+|+|+|||..+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGW---TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTC---CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 44678888777766666655321 1111111111 1234689999999999998643
No 364
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.96 E-value=0.012 Score=60.75 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l 238 (420)
+.-++|.|.||+||||+|+.+|..+ +.....++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 4468899999999999999999987 444444554443
No 365
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.96 E-value=0.035 Score=54.24 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=33.8
Q ss_pred CCCCccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHHHHH
Q 014712 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVA 223 (420)
Q Consensus 162 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Lakala 223 (420)
.+..+|++++-.....+.|.+.- ...+..++.-. +...+.+++.+|+|+|||+.+-..+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAG---FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 34457888877777777776532 11111111111 1123579999999999998654443
No 366
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.95 E-value=0.0039 Score=56.02 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=26.4
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
.+.|.|++|||||++++.+|.++|.+|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 5889999999999999999999999987
No 367
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.91 E-value=0.017 Score=62.23 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~ 225 (420)
+..++|.||+|+||||++|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456889999999999999999863
No 368
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.88 E-value=0.011 Score=60.59 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=26.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~ 235 (420)
++..++|.|++|+||||++..+|..+ |.....+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45578999999999999999999755 566666655
No 369
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.86 E-value=0.049 Score=53.89 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=63.1
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhc-----CCcEEEEecc-------hhhhhh--------hhh-hHHHH-------
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGS-------ELVQKY--------VGE-GARMV------- 250 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~-----~~~~i~v~~~-------~l~~~~--------~g~-~~~~v------- 250 (420)
+..+..++|.||+|+|||+|++.+++.. ++.++++-+. ++.... ..+ ....+
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~al 250 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVI 250 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4456679999999999999999998853 3333333211 111110 000 11111
Q ss_pred --HHHHHHHHhCCCcEEEecCcccccCC-------cc-CCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCC
Q 014712 251 --RELFQMARSKKACIVFFDEVDAIGGA-------RF-DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (420)
Q Consensus 251 --~~~f~~a~~~~p~Il~iDEiD~l~~~-------r~-~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~ 317 (420)
.+.|. ..+...+|++|++.+++.. .+ -++.+-+..+...+..++.....+...+.+..|.|.--+
T Consensus 251 t~AEyfr--d~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv~ 325 (422)
T 3ice_A 251 EKAKRLV--EHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 325 (422)
T ss_dssp HHHHHHH--HTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECCS
T ss_pred HHHHHHH--hcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEec
Confidence 11222 2456678999998876421 11 122344555555556666554333345667777665443
No 370
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.75 E-value=0.015 Score=58.50 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~ 236 (420)
++..+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35679999999999999999999865 4555555543
No 371
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.73 E-value=0.021 Score=51.76 Aligned_cols=31 Identities=19% Similarity=-0.014 Sum_probs=23.1
Q ss_pred cceeeCCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~---~~~~i~v~ 234 (420)
-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35589999999999888887654 55555554
No 372
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.71 E-value=0.047 Score=50.11 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecc-------hhhhhhhhhh-----HHHHHHHHHHHHhCCCcEEE
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS-------ELVQKYVGEG-----ARMVRELFQMARSKKACIVF 266 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~-------~l~~~~~g~~-----~~~v~~~f~~a~~~~p~Il~ 266 (420)
..-.++||+.|+|||+.+-..+... +..++.+... .+.+. .|.. -....+++..+ ....+|+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvVi 95 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIG 95 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEE
Confidence 3456789999999997665555432 4444444311 01000 0000 00001234443 4467999
Q ss_pred ecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCC
Q 014712 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (420)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~ 316 (420)
|||+.-+ .. +.++++.++ ..++.||++..+
T Consensus 96 IDEaQF~-----------~~-----v~el~~~l~----~~gi~VI~~GL~ 125 (234)
T 2orv_A 96 IDEGQFF-----------PD-----IVEFCEAMA----NAGKTVIVAALD 125 (234)
T ss_dssp ESSGGGC-----------TT-----HHHHHHHHH----HTTCEEEEECCS
T ss_pred EEchhhh-----------hh-----HHHHHHHHH----hCCCEEEEEecc
Confidence 9999886 11 344444443 245678888865
No 373
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.69 E-value=0.02 Score=57.60 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=46.3
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc----CCcEEEEecchhhhhhh--------------------hhhHHHHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYV--------------------GEGARMVRELFQM 256 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~~l~~~~~--------------------g~~~~~v~~~f~~ 256 (420)
+++.+++.|++|+||||++-.+|..+ |..+..+++........ ......++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 46678899999999999999998754 66777776653211100 0112333556666
Q ss_pred HHhCCCcEEEecCcc
Q 014712 257 ARSKKACIVFFDEVD 271 (420)
Q Consensus 257 a~~~~p~Il~iDEiD 271 (420)
+......+++||=..
T Consensus 179 ~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEECCC
Confidence 665567799998743
No 374
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.67 E-value=0.003 Score=60.19 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
..+.-+.|.||+|+||||+++.++..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455688999999999999999998764
No 375
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.65 E-value=0.029 Score=60.05 Aligned_cols=55 Identities=24% Similarity=0.232 Sum_probs=30.2
Q ss_pred ccccccccHHHHHHHHHh-hhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHH
Q 014712 166 TYNDVGGCKEQIEKMREV-VELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~-i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lak 220 (420)
+|++++-.+...+.+++. +..+...+...-..++.....+++.||+|+|||+.+-
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHH
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHH
Confidence 456665444445444442 1111111111112223446789999999999999873
No 376
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.65 E-value=0.0066 Score=55.81 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.4
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
.+-|.||||+||||+|+.++..++.+++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 46789999999999999999999877653
No 377
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.64 E-value=0.19 Score=48.64 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=32.4
Q ss_pred ccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHHHHHH
Q 014712 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 166 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Lakala~ 224 (420)
+|++++-.....+.|.+.- ...+--++... +...+.+++.+|+|+|||..+-..+-
T Consensus 9 ~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHS---CCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 5777766666666665532 11111111111 12346799999999999987654443
No 378
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.63 E-value=0.0059 Score=55.96 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
.+.-+.|.||+|+||||+++.++..++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 445688999999999999999999886
No 379
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.58 E-value=0.15 Score=51.05 Aligned_cols=71 Identities=17% Similarity=0.077 Sum_probs=44.0
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEecchhh-------hhhh----------h---hhHHHHHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV-------QKYV----------G---EGARMVRELFQMA 257 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~-------~~~~----------g---~~~~~v~~~f~~a 257 (420)
++..+.+.|++|+||||++..+|..+ +..+..+++.-.. ..+. + ......+..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 55668889999999999999999864 4555555542111 0000 0 1123335566666
Q ss_pred HhCCCcEEEecCcc
Q 014712 258 RSKKACIVFFDEVD 271 (420)
Q Consensus 258 ~~~~p~Il~iDEiD 271 (420)
+.....+++||=.-
T Consensus 177 ~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 177 RLEARDLILVDTAG 190 (425)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HHCCCCEEEEcCCC
Confidence 55666799998543
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.58 E-value=0.0026 Score=56.96 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred cceeeCCCCChHHHHHHHHHHhcC
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~ 227 (420)
-+.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999874
No 381
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.55 E-value=0.007 Score=53.50 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.8
Q ss_pred ceeeCCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014712 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 237 (420)
++++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 77887777644
No 382
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.54 E-value=0.027 Score=61.80 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=39.5
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEcc
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~ 337 (420)
|.++++|| ++++-+......+.++|..+. ..+..||+++++.+. .. ..|+++.+.
T Consensus 827 p~LLILDE----------PTsGLD~~~~~~L~~lL~~L~----~~G~TVIvI~HdL~~-----i~--~ADrIivLg 881 (916)
T 3pih_A 827 RTLYILDE----------PTVGLHFEDVRKLVEVLHRLV----DRGNTVIVIEHNLDV-----IK--NADHIIDLG 881 (916)
T ss_dssp SEEEEEES----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHH-----HT--TCSEEEEEE
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHH-----HH--hCCEEEEec
Confidence 57999999 566788999999999888774 224468888886542 23 466777663
No 383
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.53 E-value=0.021 Score=55.43 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+..+..+.|.||||+|||||+++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4455668899999999999999999754
No 384
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.51 E-value=0.039 Score=50.39 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHH
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Lak 220 (420)
|..+|++++-.....+.+.+.- ...|..++... +...+.+++.+|+|+|||..+-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQN---FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTT---CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 3456777766666666555421 11111111111 1124679999999999998744
No 385
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.044 Score=50.92 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.0
Q ss_pred CcceeeCCCCChHHHHHHH
Q 014712 203 KGVLCYGPPGTGKTLLARA 221 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Laka 221 (420)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5799999999999986543
No 386
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.46 E-value=0.0066 Score=58.48 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.++..+.|.||+|+|||||++.++..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3555668899999999999999999965
No 387
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.44 E-value=0.17 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=18.7
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
+.+++.+|+|+|||..+-..+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 57999999999999886665543
No 388
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.34 E-value=0.081 Score=51.86 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=33.9
Q ss_pred CCccccccccHHHHHHHHHhhhc-ccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHH
Q 014712 164 DVTYNDVGGCKEQIEKMREVVEL-PMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~-~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala 223 (420)
..+|++++-.+..++.|...--. |..++...-.. +...+.+++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ-IIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCCchHHHHHHH
Confidence 34688887667777777653211 11111111110 1234679999999999997655433
No 389
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.33 E-value=0.049 Score=52.90 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHH
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Lak 220 (420)
+..+|++++-.+...+.+...- ...+..++... +...+.+++.+|+|+|||..+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 3456888876676666666532 11111111111 1123579999999999998743
No 390
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.33 E-value=0.11 Score=50.36 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=32.9
Q ss_pred CccccccccHHHHHHHHHhhh-cccCChh-hhhhcCCCCCCcceeeCCCCChHHHHHHHH
Q 014712 165 VTYNDVGGCKEQIEKMREVVE-LPMLHPE-KFVKLGIDPPKGVLCYGPPGTGKTLLARAV 222 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~-~~l~~~~-~~~~~gi~~~~~vLL~GppGtGKT~Lakal 222 (420)
.+|++++-.....+.+...-- .|...+. .+..+--..++.+++.+|+|+|||+.+-..
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHH
Confidence 467777766777776665321 1111111 111111123478999999999999865543
No 391
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.31 E-value=0.016 Score=60.19 Aligned_cols=40 Identities=33% Similarity=0.387 Sum_probs=31.0
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC----CcEEEEecchhh
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSELV 239 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~----~~~i~v~~~~l~ 239 (420)
.++..+.|.|++|||||||+++++..++ ..+..+++..+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 4556789999999999999999999874 345557766553
No 392
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.29 E-value=0.0064 Score=57.91 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=24.7
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcC---CcEEEEecchh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSEL 238 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l 238 (420)
.-+.|.||+|+||||+|+.++..++ ..+..+++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4588999999999999999999765 34455555444
No 393
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.27 E-value=0.0091 Score=54.62 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=26.7
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEE
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~ 232 (420)
..+.|.|++|||||++++.+|..+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357899999999999999999999988753
No 394
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.26 E-value=0.022 Score=59.89 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=20.4
Q ss_pred ceeeCCCCChHHHHHHHHHHhc
Q 014712 205 VLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~ 226 (420)
+.|.||+|+|||||++++++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8899999999999999999853
No 395
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.22 E-value=0.0092 Score=57.23 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.7
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999864
No 396
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.20 E-value=0.012 Score=59.69 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.4
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+..++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 4468999999999999999887753
No 397
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.19 E-value=0.0078 Score=57.68 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=23.7
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
..+..+.|.||+|+|||||++.++..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445688999999999999999999765
No 398
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.18 E-value=0.068 Score=52.44 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=30.9
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHH
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLA 219 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~La 219 (420)
..+|++++-.+...+.|...- ...|..++... +...+.+++.+|+|+|||+.+
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTR---YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 346888866666666665421 11111111111 123568999999999999743
No 399
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.15 E-value=0.097 Score=47.62 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=15.6
Q ss_pred CCcceeeCCCCChHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLA 219 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~La 219 (420)
.+.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 467999999999999864
No 400
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.14 E-value=0.02 Score=61.11 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=18.0
Q ss_pred CCCcceeeCCCCChHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARA 221 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Laka 221 (420)
..+.+++.||+|+|||+.+-.
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHHH
Confidence 467899999999999998743
No 401
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.12 E-value=0.045 Score=50.45 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCcceeeCCCCChHHHHHHHHHHh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~ 225 (420)
+..|+|.|.||+|||+|+.++.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346999999999999999999864
No 402
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.10 E-value=0.014 Score=63.47 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=39.5
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEcc
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~~ 337 (420)
|.+++||| +.++-+......+.+++..+. ..+..||++|+..+.+ . ..|+++.+.
T Consensus 752 p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~----~~G~tVIvisHdl~~i-----~--~aDrii~L~ 806 (842)
T 2vf7_A 752 GTVYVLDE----------PTTGLHPADVERLQRQLVKLV----DAGNTVIAVEHKMQVV-----A--ASDWVLDIG 806 (842)
T ss_dssp CEEEEEEC----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH-----T--TCSEEEEEC
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHHHH-----H--hCCEEEEEC
Confidence 68999999 566788888899999888774 2245678888865433 2 456666663
No 403
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.10 E-value=0.012 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=21.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
...+.|.|++|+||||+++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999998864
No 404
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.04 E-value=0.0063 Score=55.02 Aligned_cols=25 Identities=44% Similarity=0.537 Sum_probs=21.9
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHh
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
++..+.|.||+|+|||||+++++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3556889999999999999999974
No 405
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.03 E-value=0.011 Score=57.26 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.1
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
.|.-+.|.||+||||||+++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344688999999999999999998764
No 406
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.02 E-value=0.03 Score=56.31 Aligned_cols=25 Identities=40% Similarity=0.373 Sum_probs=20.4
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHh
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3445789999999999999888753
No 407
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.00 E-value=0.055 Score=51.44 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=32.6
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhh-----cCCCCCCcceeeCCCCChHHHHH
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVK-----LGIDPPKGVLCYGPPGTGKTLLA 219 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~-----~gi~~~~~vLL~GppGtGKT~La 219 (420)
..+|++++-.....+.|...- +..|..++. +--.+++.+++++|+|||||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 457888877777777766531 222221111 11123578999999999999764
No 408
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.98 E-value=0.068 Score=52.29 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=31.5
Q ss_pred CccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHHHHH
Q 014712 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARA 221 (420)
Q Consensus 165 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~Laka 221 (420)
.+|++++-.....+.+.+.- ...+..++... +...+.+++.+|+|+|||+.+-.
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 46777766666666665532 11111111111 12345799999999999987443
No 409
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.98 E-value=0.058 Score=51.04 Aligned_cols=34 Identities=21% Similarity=0.091 Sum_probs=25.3
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
.+.+++.+|+|+|||..+-..+-..+...+.+..
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 3579999999999999777666655655555543
No 410
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.96 E-value=0.01 Score=58.19 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
...+.|.||+|+|||||++.+++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5568999999999999999999987654
No 411
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.96 E-value=0.05 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
...+.|.|+||+||||++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999998764
No 412
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.92 E-value=0.013 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.5
Q ss_pred cceeeCCCCChHHHHHHHHHHhcC
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~ 227 (420)
-.+|+||+|+|||+++++++..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998664
No 413
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.92 E-value=0.018 Score=48.54 Aligned_cols=21 Identities=48% Similarity=0.751 Sum_probs=19.1
Q ss_pred cceeeCCCCChHHHHHHHHHH
Q 014712 204 GVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~ 224 (420)
.+++.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999965
No 414
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.90 E-value=0.012 Score=61.34 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=29.7
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcC----CcEEEEecch
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSE 237 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~----~~~i~v~~~~ 237 (420)
+..++|.|++|+||||+|++++..++ .+++.+++..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 44688999999999999999999875 6777776543
No 415
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.86 E-value=0.11 Score=50.62 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=33.7
Q ss_pred CCccccccccHHHHHHHHHhhh-cccCChh-hhhhcCCCCCCcceeeCCCCChHHHHHH
Q 014712 164 DVTYNDVGGCKEQIEKMREVVE-LPMLHPE-KFVKLGIDPPKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~-~~l~~~~-~~~~~gi~~~~~vLL~GppGtGKT~Lak 220 (420)
..+|++++-.....+.+.+.-- .|...+. .+..+--..++.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 4578888777777777766321 1111111 1111111135789999999999998753
No 416
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.84 E-value=0.064 Score=59.04 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=32.9
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCC
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~ 318 (420)
|.+++||| +.++-+......+.+++..+. ..+..||++|+..+
T Consensus 885 p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~----~~G~TVIvisHdl~ 927 (993)
T 2ygr_A 885 RTVYILDE----------PTTGLHFDDIRKLLNVINGLV----DKGNTVIVIEHNLD 927 (993)
T ss_dssp SEEEEEES----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHH
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHH
Confidence 58999999 566788888899999888774 23456788888654
No 417
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.83 E-value=0.17 Score=50.95 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCccccccccHHHHHHHHHhhhcccCChhhhhh-----cCCCCCCcceeeCCCCChHHHHH
Q 014712 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVK-----LGIDPPKGVLCYGPPGTGKTLLA 219 (420)
Q Consensus 164 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~-----~gi~~~~~vLL~GppGtGKT~La 219 (420)
..+|.+++-.....+.|...- ...|..++. +--..++.+++.||+|+|||..+
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 346777766666666665421 111111111 11123578999999999999874
No 418
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.82 E-value=0.16 Score=50.20 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=26.4
Q ss_pred cceeeCCCCChHHHHHHHHHHhc----CCcEEEEecc-hhh
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT----DACFIRVIGS-ELV 239 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~~-~l~ 239 (420)
++++.+|+|+|||..+-+++... +...+.+... .+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~ 65 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLV 65 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 79999999999999888776653 5555555543 443
No 419
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.81 E-value=0.054 Score=54.55 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=29.6
Q ss_pred cceeeCCCCChHHHHHHHHHHhcCCcEEEEecc-hhhh
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELVQ 240 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~-~l~~ 240 (420)
.+++.||+|+|||..+-.++...+...+.+... .+..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 599999999999999988888877777776655 4443
No 420
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.77 E-value=0.049 Score=59.81 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=38.6
Q ss_pred CcEEEecCcccccCCccCCCCCCCHHHHHHHHHHHHHhcCCcCCCCeEEEEEeCCCCCCCccccCcCcccEEEEc
Q 014712 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 336 (420)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~al~r~gRfd~~i~~ 336 (420)
|.+++||| +.++-+......+.+++..+. ..+..||++|+..+.+ . ..|+++.+
T Consensus 867 p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~----~~G~TVIvisHdl~~i-----~--~aDrIivL 920 (972)
T 2r6f_A 867 RTLYILDE----------PTTGLHVDDIARLLDVLHRLV----DNGDTVLVIEHNLDVI-----K--TADYIIDL 920 (972)
T ss_dssp CEEEEEEC----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH-----T--TCSEEEEE
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHHHH-----H--hCCEEEEE
Confidence 58999999 566788888999999888774 2345688888865422 2 35566666
No 421
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.77 E-value=0.011 Score=51.90 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.9
Q ss_pred CCcceeeCCCCChHHHHHHHHHHh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+++|.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 568999999999999999999884
No 422
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.03 Score=48.72 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
.....+++.|++|+|||+|+.+++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998753
No 423
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.75 E-value=0.015 Score=53.33 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
|..+.|.|++|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999999984
No 424
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.67 E-value=0.0075 Score=56.19 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
.+.-+.|.|++|+||||+++.++..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445688999999999999999999984
No 425
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.65 E-value=0.061 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=23.4
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
.+..++|.|.||+||||+++.++..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345689999999999999999998764
No 426
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.082 Score=59.40 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~ 234 (420)
...++++||+|+|||+.+-..+... +...+.+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~ 234 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTS 234 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 4679999999999999776554432 44444443
No 427
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.62 E-value=0.041 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.7
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.++|.|++|+|||+|++.+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999888764
No 428
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.013 Score=59.47 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=26.1
Q ss_pred hcCCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 196 ~~gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
++.+.++..+.|.||+|+|||||+|.+++..
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3445677789999999999999999999853
No 429
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.58 E-value=0.081 Score=45.66 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.7
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999874
No 430
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.52 E-value=0.11 Score=51.88 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.7
Q ss_pred CCcceeeCCCCChHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLA 219 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~La 219 (420)
.+.+++.||+|+|||+.+
T Consensus 2 g~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CCEEEEECCTTSCTTTTH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 357999999999999975
No 431
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.50 E-value=0.02 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=21.2
Q ss_pred CcceeeCCCCChHHHHHHHHHHhc
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~ 226 (420)
..+.|.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999865
No 432
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.36 E-value=0.022 Score=51.75 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=19.8
Q ss_pred cceeeCCCCChHHH-HHHHHHHh--cCCcEEEE
Q 014712 204 GVLCYGPPGTGKTL-LARAVANR--TDACFIRV 233 (420)
Q Consensus 204 ~vLL~GppGtGKT~-Lakala~~--~~~~~i~v 233 (420)
-.+++||-|+|||+ |.+.+.+. .+...+.+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 46789999999999 55665332 24444444
No 433
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.31 E-value=0.013 Score=51.29 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=24.0
Q ss_pred cceeeCCCCChHHHHHHHHHHhcC-----CcEEEEecch
Q 014712 204 GVLCYGPPGTGKTLLARAVANRTD-----ACFIRVIGSE 237 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~~-----~~~i~v~~~~ 237 (420)
.+.|.|++|+|||||++.++..+. .-.+.+++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 578999999999999999998753 2345555444
No 434
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.30 E-value=0.016 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.6
Q ss_pred cceeeCCCCChHHHHHHHHHHhc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~ 226 (420)
.+.|.||+|+|||||++++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 435
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.28 E-value=0.1 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.9
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+.|.|+||+|||+|.+++++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999874
No 436
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.28 E-value=0.021 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.3
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+.|.|++|+|||+|++.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999985
No 437
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.26 E-value=0.036 Score=50.37 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=25.7
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcE
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~ 230 (420)
.+.-+.|.|++|+||||+++.++..++...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 355688999999999999999999987643
No 438
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.25 E-value=0.027 Score=50.95 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.5
Q ss_pred CcceeeCCCCChHHHHHHHHHHhcCCcEEEE
Q 014712 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v 233 (420)
..+-|+|..||||||+++.++. +|.+++..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 3588999999999999999998 88776543
No 439
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.19 E-value=0.035 Score=58.50 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
-.+.|...+..++.. ..++++||||||||+++..++..
T Consensus 181 ln~~Q~~av~~~l~~----------------~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQR----------------PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp CCHHHHHHHHHHHTC----------------SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcC----------------CCeEEECCCCCCHHHHHHHHHHH
Confidence 456677766665431 25789999999999987766553
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.18 E-value=0.23 Score=43.95 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.|+|.|++|+|||+|++++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 441
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.17 E-value=0.018 Score=59.10 Aligned_cols=27 Identities=7% Similarity=-0.075 Sum_probs=24.2
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhcCC
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRTDA 228 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~~~ 228 (420)
+..++|.|.+||||||+++++|..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999999874
No 442
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.15 E-value=0.034 Score=56.05 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=26.0
Q ss_pred CCCCCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 199 i~~~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
+.++..+.|.||+|||||||++.+++.....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4556678999999999999999999987543
No 443
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.14 E-value=0.02 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.7
Q ss_pred cceeeCCCCChHHHHHHHHHHhc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~ 226 (420)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 444
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.13 E-value=0.44 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=18.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
+.+++.+|+|+|||..+-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999887655543
No 445
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.11 E-value=0.088 Score=51.04 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
..+..+.+.|+||+||||++.+++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445568899999999999999998753
No 446
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.05 E-value=0.099 Score=54.36 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=19.9
Q ss_pred CCcceeeCCCCChHHHHHHHHHHh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~ 225 (420)
.+.+++++|+|+|||..+-.++..
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHH
Confidence 356899999999999998777654
No 447
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.03 E-value=0.36 Score=48.06 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=31.5
Q ss_pred CCCccccccccHHHHHHHHHhhhcccCChhhhhhcC---CCCCCcceeeCCCCChHHHH
Q 014712 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLL 218 (420)
Q Consensus 163 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---i~~~~~vLL~GppGtGKT~L 218 (420)
|-.+|++++-.+...+.|...- ...|.-++... +...+.+++.+|+|+|||..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSG---YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 3457888766666666665431 12222222211 12356899999999999984
No 448
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.95 E-value=0.074 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~ 225 (420)
...+++.|++|+|||+|++.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 449
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.94 E-value=0.025 Score=51.45 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=24.4
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCcEE
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i 231 (420)
.++..+.|.|+.|+||||+++.++.. +..+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 34455889999999999999999987 44333
No 450
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.93 E-value=0.032 Score=54.44 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.8
Q ss_pred CCCCcceeeCCCCChHHHHHHHHHHhcCCc
Q 014712 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (420)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Lakala~~~~~~ 229 (420)
..+..+.|.||+|+|||||++.+++.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 456679999999999999999999987544
No 451
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.91 E-value=0.022 Score=57.17 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.1
Q ss_pred CCCCCCc--ceeeCCCCChHHHHHHHHHHh
Q 014712 198 GIDPPKG--VLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 198 gi~~~~~--vLL~GppGtGKT~Lakala~~ 225 (420)
.+.++.. +.|.||+|+|||||++++++.
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4455666 889999999999999999875
No 452
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.90 E-value=0.024 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=19.6
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
.+.-+.|.|++|+||||+++.++..+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568889999999999999999876
No 453
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.89 E-value=0.18 Score=46.12 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.2
Q ss_pred CcceeeCCCCChHHHHHH
Q 014712 203 KGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lak 220 (420)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998543
No 454
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.88 E-value=0.032 Score=49.66 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999999854
No 455
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.87 E-value=0.039 Score=53.02 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=20.6
Q ss_pred cceeeCCCCChHHHHHHHHHHhc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~ 226 (420)
-++|.|+.|+|||||++.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999754
No 456
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.86 E-value=0.026 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.-+.|.|++|+||||+++.++..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4457889999999999999999876
No 457
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.83 E-value=0.029 Score=50.16 Aligned_cols=45 Identities=31% Similarity=0.344 Sum_probs=31.4
Q ss_pred ccccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHhcC
Q 014712 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~~~ 227 (420)
+-+..+..+.++..... .....+++.|++|+|||+|+..++..+.
T Consensus 11 l~~~~~~~~~~~~~~~~-------------~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 11 LAENKRLAEKNREALRE-------------SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HhhcHHHHHHHHHhhcc-------------cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44555555666554432 1234689999999999999999998753
No 458
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.81 E-value=0.18 Score=49.06 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHh
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
.+..+++.|+||+|||+|+.++++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999874
No 459
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.77 E-value=0.03 Score=47.62 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.1
Q ss_pred cceeeCCCCChHHHHHHHHHHhc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~ 226 (420)
-.+|+||.|+|||+++.|++--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998644
No 460
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.75 E-value=0.07 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.2
Q ss_pred CCCcceeeCCCCChHHHHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~ 224 (420)
....+++.|++|+|||+|++++..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999999985
No 461
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.73 E-value=0.032 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+++.|++|+|||+|++.+++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 462
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.69 E-value=0.45 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=18.6
Q ss_pred CcceeeCCCCChHHHHHHHHHH
Q 014712 203 KGVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~ 224 (420)
+++++.+|+|+|||+.+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 5799999999999997776654
No 463
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.64 E-value=0.011 Score=52.33 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=23.7
Q ss_pred cCCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 197 LGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 197 ~gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
+.+.++..+.|.|++|+|||+|++++++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34455667999999999999999998764
No 464
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.62 E-value=0.017 Score=52.99 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.4
Q ss_pred ceeeCCCCChHHHHHHHHHHhcC
Q 014712 205 VLCYGPPGTGKTLLARAVANRTD 227 (420)
Q Consensus 205 vLL~GppGtGKT~Lakala~~~~ 227 (420)
+.|.||+|+|||||+++++..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 57889999999999999998653
No 465
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.61 E-value=0.034 Score=46.80 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+++.|++|+|||+|++++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 466
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.57 E-value=0.033 Score=51.34 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
+.-+.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999999876
No 467
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.54 E-value=0.029 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.9
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+.|.|++|+|||+|++++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999873
No 468
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.49 E-value=0.025 Score=49.11 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.5
Q ss_pred cceeeCCCCChHHHHHHHHHH
Q 014712 204 GVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~ 224 (420)
.++|.|++|+|||+|++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999987
No 469
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.47 E-value=0.038 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 470
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.40 E-value=0.34 Score=51.21 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=23.2
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCCcEEEEec
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 235 (420)
..+.+++.||+|+|||+.+-..+-+.+...+.+..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~P 265 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 265 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcc
Confidence 34568999999999997655444444544444443
No 471
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.37 E-value=0.044 Score=46.73 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCCcceeeCCCCChHHHHHHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~ 224 (420)
....+++.|++|+|||+|+.++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 355699999999999999999986
No 472
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.37 E-value=0.034 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.1
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+++.|++|+|||+|+.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 473
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.35 E-value=0.14 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
-|.+.|.||+|||+|+.++.+.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4889999999999999999874
No 474
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.33 E-value=0.52 Score=48.37 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=15.9
Q ss_pred CCCcceeeCCCCChHHHHH
Q 014712 201 PPKGVLCYGPPGTGKTLLA 219 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~La 219 (420)
..+.+++.+|+|+|||..+
T Consensus 110 ~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 3567999999999999853
No 475
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.31 E-value=0.04 Score=46.32 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=20.0
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 476
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.31 E-value=0.041 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 477
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.28 E-value=0.035 Score=56.56 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.1
Q ss_pred CCCCCCcceeeCCCCChHHHHHHHHHHhc
Q 014712 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 198 gi~~~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
.+.+ ..+.|.||+|+|||||+++++...
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 4556 678899999999999999999854
No 478
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.26 E-value=0.042 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.7
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 479
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.26 E-value=0.04 Score=50.30 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=23.2
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhcCC
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRTDA 228 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~~~ 228 (420)
.+.-+.|.|++|+||||+++.++..++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3455778899999999999999987644
No 480
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.26 E-value=0.059 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCcceeeCCCCChHHHHHHHHHHhc
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~~ 226 (420)
...++|.|.+|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468888999999999999999865
No 481
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.24 E-value=0.043 Score=46.38 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHh
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
....+++.|++|+|||+|+.++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999763
No 482
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.22 E-value=0.064 Score=58.16 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHhhhcccCChhhhhhcCCCCCCcceeeCCCCChHHHHHHHHHHh
Q 014712 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
-.+.|.+.+..++.. ..++++||||||||+++..++..
T Consensus 357 Ln~~Q~~Av~~~l~~----------------~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQR----------------PLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp CCHHHHHHHHHHHTS----------------SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccC----------------CeEEEEcCCCCCHHHHHHHHHHH
Confidence 356666666655431 25789999999999987776653
No 483
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.18 E-value=0.036 Score=47.01 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.3
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+++.|++|+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999999763
No 484
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.17 E-value=0.044 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+++.|++|+|||+|+.++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 485
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.15 E-value=0.045 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 486
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.14 E-value=0.039 Score=47.65 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+.|.|++|+|||+|++++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 487
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.11 E-value=0.08 Score=52.14 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=26.1
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~ 234 (420)
...++++.||+|+|||++++.++... +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999999999998753 44444444
No 488
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.11 E-value=0.046 Score=46.64 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+++.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 489
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.39 Score=41.48 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred cceeeCCCCChHHHHHHHHHHhc
Q 014712 204 GVLCYGPPGTGKTLLARAVANRT 226 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~~ 226 (420)
.++|.|++|+|||+|++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998753
No 490
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.09 E-value=0.042 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 491
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.07 E-value=0.19 Score=49.41 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=16.8
Q ss_pred CCcceeeCCCCChHHHHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLARAV 222 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakal 222 (420)
.+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 457999999999999954443
No 492
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.04 E-value=0.041 Score=48.30 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=21.2
Q ss_pred CCCcceeeCCCCChHHHHHHHHHHh
Q 014712 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lakala~~ 225 (420)
....+++.|++|+|||+|+.++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.97 E-value=0.049 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.0
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 494
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.96 E-value=0.043 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.9
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 495
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.96 E-value=0.049 Score=45.77 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.7
Q ss_pred cceeeCCCCChHHHHHHHHHH
Q 014712 204 GVLCYGPPGTGKTLLARAVAN 224 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~ 224 (420)
.+++.|++|+|||+|+.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 496
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.94 E-value=0.16 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred cceeeCCCCChHHHHHHHHHHh
Q 014712 204 GVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 204 ~vLL~GppGtGKT~Lakala~~ 225 (420)
.|+|.|.||+|||+|..++.+.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999763
No 497
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=92.88 E-value=0.51 Score=48.09 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.4
Q ss_pred CCcceeeCCCCChHHHHHH
Q 014712 202 PKGVLCYGPPGTGKTLLAR 220 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lak 220 (420)
++.+++.+|+|+|||..+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4789999999999998743
No 498
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.87 E-value=0.18 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCcceeeCCCCChHHHHHHHHHHh
Q 014712 202 PKGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakala~~ 225 (420)
...+++.|.+|+|||+|+.++.+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999874
No 499
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.87 E-value=0.045 Score=57.51 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.6
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
+.++++|+||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999998877654
No 500
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.85 E-value=0.052 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred CcceeeCCCCChHHHHHHHHHHh
Q 014712 203 KGVLCYGPPGTGKTLLARAVANR 225 (420)
Q Consensus 203 ~~vLL~GppGtGKT~Lakala~~ 225 (420)
..+++.|++|+|||+|++++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
Done!