BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014714
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
pdb|3D4J|B Chain B, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
Length = 400
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 194/421 (46%), Positives = 254/421 (60%), Gaps = 23/421 (5%)
Query: 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
MA+EK + VT P NIAVIKYWGKRDE L+LP+N S+SVTL D L TTTT +S F
Sbjct: 1 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDF 60
Query: 61 DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
+DR+WLNG+E +G R Q CL+EIR A ++ G + +H+AS NNF
Sbjct: 61 TEDRIWLNGREEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNF 118
Query: 121 PTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
PT CL ++LA++ + +S LS +AR+GSGSACRSL+GGFV+W +G++
Sbjct: 119 PTAAGLASSAAGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQ 175
Query: 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPK 240
+G DS+A Q+ E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+ VVP
Sbjct: 176 ADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPA 235
Query: 241 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 300
R+ +M I+ DF SFAQLT DSNQFHA CLDT PPI Y+N S RII V R+N
Sbjct: 236 RMAEMARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHH 295
Query: 301 GSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGI 360
G +VAYTFDAGPNAV+ + +A E + + FPP S D +
Sbjct: 296 GDTKVAYTFDAGPNAVIFTLDDTVA-EFVAAVWHGFPPGSNG--------------DTFL 340
Query: 361 DGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 419
G++ + PL E+ ++ + G V Y I T+ G GP +L D LL P GLPK
Sbjct: 341 KGLQ-VRPAPLSAELQAALAMEPTPGGVKYIIVTQVGPGPQILDDPCAHLLGP-DGLPKP 398
Query: 420 A 420
A
Sbjct: 399 A 399
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
pdb|3F0N|B Chain B, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
Length = 414
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 197/414 (47%), Positives = 252/414 (60%), Gaps = 27/414 (6%)
Query: 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL 67
LMVT P NIAVIKYWGKRDE LILP+N S+SVTL D L TTTTVA+S F +DR+WL
Sbjct: 22 LMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWL 81
Query: 68 NGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXX 127
NG+E +G R Q CL+EIR A TE G + K+H +AS NNFPT
Sbjct: 82 NGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVH--VASVNNFPTAAGLA 139
Query: 128 XXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
CL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+
Sbjct: 140 SSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSI 196
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247
A Q+ E HW L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP+R+ +M
Sbjct: 197 ARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTR 256
Query: 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAY 307
IQ DF FAQLT DSNQFHA CLDT PPI Y+NDTS RII V R+N G +VAY
Sbjct: 257 CIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAY 316
Query: 308 TFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIE 367
TFDAGPNAV+ +A E + + FPP + GDK +K ++
Sbjct: 317 TFDAGPNAVIFTLEDTVA-EFVAAVRHSFPPAAN--------GDKF---------LKGLQ 358
Query: 368 ALP--LPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 418
P L E+ + + G V Y I T+ G GP +L D LL + GLP+
Sbjct: 359 VAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLG-QDGLPQ 411
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate
Decarboxylase At 2.3 Angstrom Resolution
Length = 416
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 174/419 (41%), Positives = 232/419 (55%), Gaps = 31/419 (7%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
V + P NIA +KYWGKRD L LP N SISVTL D L T T+ A +P F++D +W
Sbjct: 23 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLW 82
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXX 126
LNG+ S+ R QNCL+++R + E + + + W+ LHI S NNFPT
Sbjct: 83 LNGEPHSIDNERTQNCLRDLRQLRKEXESKDASLPTLSQ-WK---LHIVSENNFPTAAGL 138
Query: 127 XXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
LV ++AKL L ++ S++S IAR+GSGSACRSLFGG+V W GK +G DS
Sbjct: 139 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEXGKAEDGHDS 198
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246
AVQ+ D W + VVS +K+ SST G + +V TS L + R + VVPKR
Sbjct: 199 XAVQIADSSDWPQXKACVLVVSDIKKDVSSTQGXQLTVATSELFKERIEHVVPKRFEVXR 258
Query: 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVA 306
+AI DF++FA+ T DSN FHA CLD+ PPIFY NDTS RIIS+ N+ G VA
Sbjct: 259 KAIVEKDFATFAKETXXDSNSFHATCLDSFPPIFYXNDTSKRIISWCHTINQFYGETIVA 318
Query: 307 YTFDAGPNAVL--IARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMK 364
YTFDAGPNAVL +A N + +L P DK +
Sbjct: 319 YTFDAGPNAVLYYLAENESKLFAFIYKLFGSVPG-----------WDKKFT-------TE 360
Query: 365 DIEALPLPPEINNISAQ----KYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 419
+EA E +N +A+ + DV I T+ G GP + +++L++ K+GLPKE
Sbjct: 361 QLEAFNHQFESSNFTARELDLELQKDVARVILTQVGSGP---QETNESLIDAKTGLPKE 416
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
pdb|2HKE|B Chain B, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
Length = 380
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 192/359 (53%), Gaps = 24/359 (6%)
Query: 10 VTAQTPTNIAVIKYWGKRD--ETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL 67
VT + P NIA IKYWGKR+ ETLILP NDS S+TL + T+V + + D + L
Sbjct: 6 VTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRL 65
Query: 68 NGKEISLGGG-RYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXX 126
NG E+ +G R Q+ L +RS C E K + +I S NNFPT
Sbjct: 66 NGTEVDVGKTPRVQSMLLHLRS-TCPEELKNKKV------------NIVSENNFPTAAGM 112
Query: 127 XXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
+ A L+ ++ + +S +AR GSGSACRS FGGFV W G++ +GSD
Sbjct: 113 ASSASGYCAMS---AALIRAFKSTTNVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSDC 169
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246
+A Q VDE HW ++ ++ AV+ QK+ SST GM++S++TS L++ R E VP+R+
Sbjct: 170 VATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIAS 229
Query: 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVA 306
AI+ DF++FA++ +S+ +C T P I Y + S+ +I V+ +N G +A
Sbjct: 230 RAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALA 289
Query: 307 YTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKD 365
YTFDAG N L + E + L+ FP T + GD+ +L + + D
Sbjct: 290 YTFDAGANCFLFVLKEDLP-EAVAMLMEHFP----TPFEKFFFGDRELLEKVKVVSLPD 343
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT5|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT6|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT6|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|3QT7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|4DPT|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DPT|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DU7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
pdb|4DU7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
Length = 332
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 169/328 (51%), Gaps = 29/328 (8%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK DET I+P+N+S+SVTL D T T V P F +D + LNG E
Sbjct: 12 ARAHTNIALIKYWGKADETYIIPMNNSLSVTL--DRFYTETKVTFDPDFTEDCLILNGNE 69
Query: 72 ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 130
++ + QN + +R A + +LH I S N PT
Sbjct: 70 VNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAGLASSA 113
Query: 131 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 190
L + + ++L + + LS +AR+GSGSA RS+FGGF +W ++G+ +
Sbjct: 114 SAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAH 170
Query: 191 LVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249
++ W DL +I V++++ K+ SS +GM + +TS Q+ V + + + +EA+
Sbjct: 171 GINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDH-VDEDLNEAKEAV 229
Query: 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTF 309
+N DF ++ A+ + HA L PP Y+ S+ ++ VE+ R P +T
Sbjct: 230 KNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQC-RKANLP-CYFTM 287
Query: 310 DAGPNA-VLIARNRKIATELLQRLLFFF 336
DAGPN VL+ + K A ++++ L F
Sbjct: 288 DAGPNVKVLVEKKNKQA--VMEQFLKVF 313
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|3QT8|B Chain B, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|4DPU|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPU|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPX|A Chain A, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPX|B Chain B, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPY|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DPY|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 29/328 (8%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK DET I+P+N+S+SVTL D T T V P F +D + LNG E
Sbjct: 12 ARAHTNIALIKYWGKADETYIIPMNNSLSVTL--DRFYTETKVTFDPDFTEDCLILNGNE 69
Query: 72 ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 130
++ + QN + +R A + +LH I S N PT
Sbjct: 70 VNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAGLASSA 113
Query: 131 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 190
L + + ++L + + LS +AR+GSGSA RS+FGGF +W ++G+ +
Sbjct: 114 SAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAH 170
Query: 191 LVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249
++ W DL +I V++++ K+ S+ +GM + +TS Q+ V + + + +EA+
Sbjct: 171 GINSNGWEKDLSMIFVVINNQSKKVSARSGMSLTRDTSRFYQYWLDH-VDEDLNEAKEAV 229
Query: 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTF 309
+N DF ++ A+ + HA L PP Y+ S+ ++ VE+ R P +T
Sbjct: 230 KNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQC-RKANLP-CYFTM 287
Query: 310 DAGPNA-VLIARNRKIATELLQRLLFFF 336
DAGPN VL+ + K A ++++ L F
Sbjct: 288 DAGPNVKVLVEKKNKQA--VMEQFLKVF 313
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK2|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK3|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
pdb|2HK3|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
Length = 331
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 169/332 (50%), Gaps = 23/332 (6%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK+DE LI+P+N+SISVTL+ T T V + QD+ WLNG++
Sbjct: 11 ARAHTNIALIKYWGKKDEALIIPMNNSISVTLEK--FYTETKVTFNDQLTQDQFWLNGEK 68
Query: 72 ISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXXX 131
+S G+ L++I S+ D+ GI DW + I S N PT
Sbjct: 69 VS---GKE---LEKI-SKYMDIVRNRAGI-----DW---YAEIESDNFVPTAAGLASSAS 113
Query: 132 XXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQL 191
L + + ++++ + LS +AR GSGSA RS++GGF +W G + S AV L
Sbjct: 114 AYAALAAACNQALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGY--SDETSYAVPL 171
Query: 192 VDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQN 251
+DL +I V++ K+ S GM + TS Q+ + + + + + AIQ+
Sbjct: 172 ESNHFEDDLAMIFVVINQHSKKVPSRYGMSLTRNTSRFYQYWLDH-IDEDLAEAKAAIQD 230
Query: 252 HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDA 311
DF ++ + + HA L ++PP Y+ S+ +++ V R G P +T DA
Sbjct: 231 KDFKRLGEVIEENGLRMHATNLGSTPPFTYLVQESYDVMALVHEC-REAGYP-CYFTMDA 288
Query: 312 GPNAVLIARNRKIATELLQRLLFFFPPNSETD 343
GPN V I +K +++ +LL F N D
Sbjct: 289 GPN-VKILVEKKNKQQIIDKLLTQFDNNQIID 319
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|C Chain C, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|D Chain D, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|E Chain E, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|F Chain F, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|G Chain G, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|H Chain H, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DU8|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DU8|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 168/328 (51%), Gaps = 29/328 (8%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
A+ TNIA+IKYWGK DET I+P+N+S+SVTL D T T V P F +D + LNG E
Sbjct: 12 ARAHTNIALIKYWGKADETYIIPMNNSLSVTL--DRFYTETKVTFDPDFTEDCLILNGNE 69
Query: 72 ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 130
++ + QN + +R A + +LH I S N PT
Sbjct: 70 VNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAGLASSA 113
Query: 131 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 190
L + + ++L + + LS +AR+GSGSA RS+FGGF +W ++G+ +
Sbjct: 114 SAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAH 170
Query: 191 LVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249
++ W DL +I V++++ K+ SS +GM + +TS Q+ V + + + +EA+
Sbjct: 171 GINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDH-VDEDLNEAKEAV 229
Query: 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTF 309
+N DF ++ A+ + HA L PP Y+ S+ ++ VE+ R P +T
Sbjct: 230 KNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQC-RKANLP-CYFTM 287
Query: 310 DAGPNA-VLIARNRKIATELLQRLLFFF 336
AGPN VL+ + K A ++++ L F
Sbjct: 288 AAGPNVKVLVEKKNKQA--VMEQFLKVF 313
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
pdb|3LTO|B Chain B, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
Length = 323
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 144/319 (45%), Gaps = 38/319 (11%)
Query: 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE 71
AQ P NIA+IKY GK+DE LP N S+S TL +L ++ + P+ + +W +
Sbjct: 5 AQAPANIALIKYXGKKDENSNLPDNSSLSYTL--SNLLSSVKLEKLPT--KKDIW---EP 57
Query: 72 ISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFP----TXXXXX 127
+++ G N E + R D +++++ I S NNFP
Sbjct: 58 LTIPGAPEFNLSVEAQKRFID-----HLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSAS 112
Query: 128 XXXXXXXCLVFSLAKLMNLK----ENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNG 183
C +L++L + Q+QLS R GSGS+CRS + + W G
Sbjct: 113 SFAALTKCASIALSELTQKPLPSIDEQAQLS---RLGSGSSCRSFYAPWALW------TG 163
Query: 184 SDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 243
A+ L + DL+ + V+SS++KE S + V+TS + R+ E +
Sbjct: 164 DKVSAIDLP----YKDLLHQVIVISSQEKEIPSRVAHK-LVKTSPFYETRS-ERAEANLK 217
Query: 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER-WNRSVGS 302
+ A +N D++S Q+ + H + P Y+ D + I+S +E+ WN
Sbjct: 218 LLLNAFENKDWTSIYQICWHEFLDXHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDG 277
Query: 303 PQVAYTFDAGPNAVLIARN 321
P V T DAGPN L+ R+
Sbjct: 278 PVV--TXDAGPNVHLLYRS 294
>pdb|2GS8|A Chain A, Structure Of Mevalonate Pyrophosphate Decarboxylase From
Streptococcus Pyogenes
Length = 317
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 145/328 (44%), Gaps = 39/328 (11%)
Query: 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSP-SFDQDRMWL 67
++T + NIA+IKYWGK ++ +P SIS+TL ++ TTT+V+ P + D+ ++
Sbjct: 8 VITVTSYANIAIIKYWGKENQAKXIPSTSSISLTL--ENXFTTTSVSFLPDTATSDQFYI 65
Query: 68 NGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXX 127
N G QN + + A + + G K + Q NN PT
Sbjct: 66 N--------GILQNDEEHTKISAIIDQFRQPGQAFVKXETQ---------NNXPTAAGLS 108
Query: 128 XXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
LV + +L + + +Q L+ A+ SGS+ RS FG W DS
Sbjct: 109 SSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAW-------DKDSG 161
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247
A+ V+ + I V+++ +K SS G + +TS + V + + +
Sbjct: 162 AIYKVETDL--KXAXIXLVLNAAKKPISSREGXKLCRDTSTTFD----QWVEQSAIDYQH 215
Query: 248 A---IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQ 304
++ ++F QLT A++ HA +PP Y+ S++ V+ R G
Sbjct: 216 XLTYLKTNNFEKVGQLTEANALAXHATTKTANPPFSYLTKESYQAXEAVKEL-RQEGFA- 273
Query: 305 VAYTFDAGPNAVLIARNRKIATELLQRL 332
+T DAGPN ++ + +A +L +RL
Sbjct: 274 CYFTXDAGPNVKVLCLEKDLA-QLAERL 300
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 385 GDVNYFICTRPGGGPVLLS-DDSKALLNPKSG 415
G+ NYF T+ GG PV+ DD+K ++N +
Sbjct: 280 GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQA 311
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 385 GDVNYFICTRPGGGPVLLS-DDSKALLNPKSG 415
G+ NYF T+ GG PV+ DD+K ++N +
Sbjct: 280 GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQA 311
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 385 GDVNYFICTRPGGGPVLLS-DDSKALLNPKSG 415
G+ NYF T+ GG PV+ DD+K ++N +
Sbjct: 280 GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQA 311
>pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1V7Y|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1WQ5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
pdb|1WQ5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
Length = 268
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 333 LFFFPPNSETDL----NSYVLGDKSILRDAGIDGMKDIEALPL 371
+F PPN++ DL SY G +L AG+ G ++ ALPL
Sbjct: 151 IFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPL 193
>pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
pdb|1XC4|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
Length = 268
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 333 LFFFPPNSETDL----NSYVLGDKSILRDAGIDGMKDIEALPL 371
+F PPN++ DL SY G +L AG+ G ++ ALPL
Sbjct: 151 IFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPL 193
>pdb|1XCF|A Chain A, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
pdb|1XCF|B Chain B, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
Length = 268
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 333 LFFFPPNSETDL----NSYVLGDKSILRDAGIDGMKDIEALPL 371
+F PPN++ DL SY G +L AG+ G ++ ALPL
Sbjct: 151 IFICPPNADDDLLRQIASYGRGFTYLLSRAGVTGAENRAALPL 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,224,076
Number of Sequences: 62578
Number of extensions: 488443
Number of successful extensions: 909
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 19
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)