BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014714
(420 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2
Length = 401
Score = 360 bits (925), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 212/422 (50%), Positives = 270/422 (63%), Gaps = 28/422 (6%)
Query: 1 MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS 59
MA+EK LMVT P NIAVIKYWGKRDE LILP+N S+SVTL D L TTTTVA+S
Sbjct: 1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKD 60
Query: 60 FDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119
F +DR+WLNG+E +G R Q CL+EIR A TE G + K+H +AS NN
Sbjct: 61 FTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVH--VASVNN 118
Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
FPTAAGLASSAAG+ACL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G+
Sbjct: 119 FPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGE 175
Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239
+ +G DS+A Q+ E HW L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP
Sbjct: 176 QADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVP 235
Query: 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299
+R+ +M IQ DF FAQLT DSNQFHA CLDT PPI Y+NDTS RII V R+N
Sbjct: 236 ERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTH 295
Query: 300 VGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAG 359
G +VAYTFDAGPNAV+ +A E + + FPP + GDK
Sbjct: 296 QGQTKVAYTFDAGPNAVIFTLEDTVA-EFVAAVRHSFPPAAN--------GDKF------ 340
Query: 360 IDGMKDIEALP--LPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGL 416
+K ++ P L E+ ++ + G V Y I T+ G GP +L D LL + GL
Sbjct: 341 ---LKGLQVAPVLLSDELKAALAVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLG-QDGL 396
Query: 417 PK 418
P+
Sbjct: 397 PQ 398
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1
Length = 400
Score = 358 bits (918), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 205/421 (48%), Positives = 266/421 (63%), Gaps = 23/421 (5%)
Query: 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
MA+EK + VT P NIAVIKYWGKRDE L+LP+N S+SVTL D L TTTT +S F
Sbjct: 1 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDF 60
Query: 61 DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
+DR+WLNG+E +G R Q CL+EIR A ++ G + +H+AS NNF
Sbjct: 61 TEDRIWLNGREEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNF 118
Query: 121 PTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
PTAAGLASSAAG+ACL ++LA++ + +S LS +AR+GSGSACRSL+GGFV+W +G++
Sbjct: 119 PTAAGLASSAAGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQ 175
Query: 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPK 240
+G DS+A Q+ E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+ VVP
Sbjct: 176 ADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPA 235
Query: 241 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 300
R+ +M I+ DF SFAQLT DSNQFHA CLDT PPI Y+N S RII V R+N
Sbjct: 236 RMAEMARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHH 295
Query: 301 GSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGI 360
G +VAYTFDAGPNAV+ + +A E + + FPP S D +
Sbjct: 296 GDTKVAYTFDAGPNAVIFTLDDTVA-EFVAAVWHGFPPGSNG--------------DTFL 340
Query: 361 DGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 419
G++ + PL E+ ++ + G V Y I T+ G GP +L D LL P GLPK
Sbjct: 341 KGLQ-VRPAPLSAELQAALAMEPTPGGVKYIIVTQVGPGPQILDDPCAHLLGP-DGLPKP 398
Query: 420 A 420
A
Sbjct: 399 A 399
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1
Length = 400
Score = 356 bits (914), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 204/413 (49%), Positives = 268/413 (64%), Gaps = 26/413 (6%)
Query: 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLN 68
MVT P NIAVIKYWGKRDE LILPVN S+SVTL DHL TTTT+A S SF +D +WLN
Sbjct: 11 MVTCTAPVNIAVIKYWGKRDEDLILPVNASLSVTLHQDHLRTTTTIACSRSFHKDCIWLN 70
Query: 69 GKEISLGGGRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLA 127
GKE + R Q+CL EIR A ++T + + K +HI S NNFPTAAGLA
Sbjct: 71 GKEQDISHPRLQSCLLEIRRLAQRRKNTGDPASDVSNK------VHICSVNNFPTAAGLA 124
Query: 128 SSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
SSAAG+ACLV++L++L N+ + +LS +ARQGSGSACRSL+GGFV+W LG++ +G DS+
Sbjct: 125 SSAAGYACLVYTLSQLFNV---EGELSGVARQGSGSACRSLYGGFVQWKLGEQSDGKDSI 181
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247
A Q+ E +W +L ++I VVS+ QK ST+GM SVETS LL++RA VVP R+ +M
Sbjct: 182 AEQVASELYWPELRVLILVVSAEQKSVGSTSGMHTSVETSHLLKYRADAVVPGRMEEMIR 241
Query: 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAY 307
AI+ DF F +LT DSNQFHA+CLDT PPIFY+N+ SH+IIS V R+N+ G +VAY
Sbjct: 242 AIRLRDFPKFGELTMKDSNQFHAICLDTYPPIFYLNNISHQIISLVHRYNQYYGETRVAY 301
Query: 308 TFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIE 367
TFDAGPNAV+ + + E ++ + FFPP E + + G D + ++DI
Sbjct: 302 TFDAGPNAVIYSLQDYLP-EFVEVVRHFFPP--EVNEEEFFKGLPVCPADLSEEMIRDIN 358
Query: 368 ALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA 420
P P + Y I T+ G GP ++ D + LL GLPK++
Sbjct: 359 MKPTP------------NGIRYMISTKAGPGPRVVEDPNLHLLG-ADGLPKKS 398
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2
SV=1
Length = 401
Score = 355 bits (910), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 208/422 (49%), Positives = 268/422 (63%), Gaps = 28/422 (6%)
Query: 1 MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS 59
MA+EK LMVT P NIAVIKYWGKRDE LILP+N S+SVTL D L TTTT A+S
Sbjct: 1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINPSLSVTLHQDQLKTTTTAAISKD 60
Query: 60 FDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119
F +DR+WLNG+E +G R Q CL+EIR A T G + K+H +AS NN
Sbjct: 61 FTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTGDGDALPLSLGYKVH--VASVNN 118
Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
FPTAAGLASSAAG+ACL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G+
Sbjct: 119 FPTAAGLASSAAGYACLAYTLARVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGE 175
Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239
+ +G DS+A Q+ E HW L ++I VVS+ +K T ST GM+ SV TS LL+ RA+ +VP
Sbjct: 176 QADGKDSIARQIAPEWHWPQLRVLILVVSAEKKPTGSTVGMQTSVATSTLLKFRAESIVP 235
Query: 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299
+R+ +M IQ DF +FAQLT DSNQFHA CLDT PPI Y+NDTS RII V R+N
Sbjct: 236 ERMKEMTRCIQEQDFQAFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNAH 295
Query: 300 VGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAG 359
G +VAYTFDAGPNAV+ +A E + + FPP + GDK
Sbjct: 296 HGQTKVAYTFDAGPNAVIFTLEDTVA-EFVAAVRHSFPPAAN--------GDKF------ 340
Query: 360 IDGMKDIEALP--LPPEI-NNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGL 416
+K ++ P L E+ +++ + G V Y I T+ G GP +L D LL P GL
Sbjct: 341 ---LKGLQVAPVLLSDELKTSLATEPSPGGVQYIIATQVGPGPQVLDDPHHHLLGP-DGL 396
Query: 417 PK 418
P+
Sbjct: 397 PQ 398
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1
Length = 400
Score = 352 bits (903), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 200/424 (47%), Positives = 266/424 (62%), Gaps = 29/424 (6%)
Query: 1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
MA+EK +++VT P NIAV+KYWGKRDE LILP+N S+SVTL D L TTTT A+S F
Sbjct: 1 MASEKPIVVVTCTAPVNIAVVKYWGKRDEELILPINSSLSVTLHQDQLKTTTTAAISRDF 60
Query: 61 DQDRMWLNGKEISLGGGRYQNCLKEIR----SRACDVEDTEKGIKIEKKDWQKLHLHIAS 116
+DR+WLNG+E +G R Q CL+EIR R D + + + K +H+AS
Sbjct: 61 TEDRIWLNGREEDMGHPRLQACLREIRRLARKRRSDGHEDPLPLSLSYK------VHVAS 114
Query: 117 FNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWI 176
NNFPTAAGLASSAAG+ACL ++LA++ + S LS +AR+GSGSACRSL+GGFV+W
Sbjct: 115 ENNFPTAAGLASSAAGYACLAYTLARVYGV---DSDLSEVARRGSGSACRSLYGGFVEWQ 171
Query: 177 LGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKE 236
+G+ +G DS+A Q+ E HW +L ++I VVS+ +K ST GM+ SVETS LL+ RA+
Sbjct: 172 MGERPDGKDSVACQVAPESHWPELRVLILVVSAERKPMGSTAGMQTSVETSALLKFRAEA 231
Query: 237 VVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERW 296
+VP R+ +M I+ +F +F QLT DSNQFHA CLDT PPI Y++DTS RII V R+
Sbjct: 232 LVPPRMAEMTRCIRERNFQAFGQLTMKDSNQFHATCLDTFPPISYLSDTSRRIIQLVHRF 291
Query: 297 NRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILR 356
N G +VAYTFDAGPNAV+ + +A E + + FPP S D L + +L
Sbjct: 292 NAHHGQTKVAYTFDAGPNAVVFTLDDTVA-EFVAAVRHSFPPESNGDKFLKGLPVEPVLL 350
Query: 357 DAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGL 416
+ + ++ +P G + Y I T+ G GP +L D LL P GL
Sbjct: 351 SDELKAVLGMDPVP--------------GSIRYIIATQVGPGPQVLDDPGAHLLGP-DGL 395
Query: 417 PKEA 420
PK A
Sbjct: 396 PKPA 399
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum
GN=mvd PE=3 SV=1
Length = 391
Score = 347 bits (890), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 188/412 (45%), Positives = 262/412 (63%), Gaps = 30/412 (7%)
Query: 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNG 69
VT P NIAVIKYWGKRDE +ILP+N S+S TL D L TTTT+ S + +D ++LNG
Sbjct: 6 VTCTAPVNIAVIKYWGKRDENIILPLNSSLSGTLHQDDLKTTTTIVASEDYTEDELYLNG 65
Query: 70 KEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASS 129
K+ + RYQN LK IRSRA + D +K +HIAS NNFPTAAGLASS
Sbjct: 66 KKEDINAVRYQNVLKMIRSRATKLMD------------KKHCVHIASINNFPTAAGLASS 113
Query: 130 AAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAV 189
A+G+ CLVF+LA++ + +S IAR GSGSACRS++GGFVKW +G + +GSDS+AV
Sbjct: 114 ASGYCCLVFTLAQMYGV---DGDISGIARLGSGSACRSMYGGFVKWEMGTKDDGSDSIAV 170
Query: 190 QLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249
Q+ E HW D+ II+ VV+ ++KETSST GM++S TS++++ R VP R+ +EEAI
Sbjct: 171 QVQPESHWPDMNIIVLVVNDKKKETSSTDGMQKSAATSVMMKERCAVTVPNRMRDIEEAI 230
Query: 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTF 309
DF +F +T DS+ FH VC T+PPI+Y+NDTS I++ + R+N+ GS + AYTF
Sbjct: 231 NKKDFQTFGDITMKDSDDFHEVCATTTPPIYYLNDTSRYIMNLIHRYNKLSGSIKCAYTF 290
Query: 310 DAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEAL 369
DAGPNA I + TE+L + FP + D+ +Y G K + I+ E L
Sbjct: 291 DAGPNAC-IYLPAESTTEVLSLFMKHFPGD---DMQTYYRGPKENI--PSIENFVPSEKL 344
Query: 370 P--LPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 419
P+ +++ K Y + T+ G GP +LS +S++L++ +GLPK+
Sbjct: 345 ASLYTPDTTFVNSLK------YILHTKVGPGPQILS-ESESLIDNTTGLPKQ 389
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=MVD1 PE=3 SV=2
Length = 388
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 254/412 (61%), Gaps = 30/412 (7%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
V +A P NIA +KYWGKRD++L LP N SISVTL + L T T+VA S F +D++W
Sbjct: 3 VYTSSATAPVNIATLKYWGKRDKSLNLPTNSSISVTLSQNDLRTLTSVAASEDFKEDKLW 62
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
LNGK SL R + CL ++R+ ++E + I + +HI S NNFPTAAGL
Sbjct: 63 LNGKLESLESERTKACLADLRTLRKELESNDSSIP----KLSQFGVHIVSENNFPTAAGL 118
Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
ASSAAGFA LV S+AKL L +N S++S IAR+GSGSACRSLFGG+V W +G+E NG DS
Sbjct: 119 ASSAAGFAALVVSIAKLYELPQNMSEISKIARKGSGSACRSLFGGYVAWEMGQETNGEDS 178
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246
AV++ HW ++ I VVS +K+T ST+GM+ +V TS L Q R KEVVPKR M+
Sbjct: 179 KAVEVAPLSHWPNMKAAILVVSDDKKDTPSTSGMQTTVATSDLFQWRIKEVVPKRFDDMK 238
Query: 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVA 306
++I DF++F LT DSN FHAVCLD++PPIFY+NDTS +II + N+ G A
Sbjct: 239 DSILRKDFATFGDLTMKDSNSFHAVCLDSTPPIFYLNDTSKKIIKLIHELNKREGKIIAA 298
Query: 307 YTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDI 366
YTFDAGPNAV I ++ +++L + +F S V G + L +D DI
Sbjct: 299 YTFDAGPNAV-IYYEQENESKVLGVIYKYF---------SKVSGWEK-LDTKTLDTTSDI 347
Query: 367 EALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 418
+A P + Y G V+ I T G GP S++L+N K GLPK
Sbjct: 348 QADP----------ELYKG-VSKIILTEVGQGP---QGSSESLINDK-GLPK 384
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2
Length = 396
Score = 312 bits (800), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 251/419 (59%), Gaps = 31/419 (7%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
V + P NIA +KYWGKRD L LP N SISVTL D L T T+ A +P F++D +W
Sbjct: 3 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLW 62
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
LNG+ S+ R QNCL+++R ++E + + + W+ LHI S NNFPTAAGL
Sbjct: 63 LNGEPHSIDNERTQNCLRDLRQLRKEMESKDASLPTLSQ-WK---LHIVSENNFPTAAGL 118
Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
ASSAAGFA LV ++AKL L ++ S++S IAR+GSGSACRSLFGG+V W +GK +G DS
Sbjct: 119 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDS 178
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246
+AVQ+ D W + + VVS +K+ SST GM+ +V TS L + R + VVPKR M
Sbjct: 179 MAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMR 238
Query: 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVA 306
+AI DF++FA+ T DSN FHA CLD+ PPIFYMNDTS RIIS+ N+ G VA
Sbjct: 239 KAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVA 298
Query: 307 YTFDAGPNAVL--IARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMK 364
YTFDAGPNAVL +A N + +L P DK +
Sbjct: 299 YTFDAGPNAVLYYLAENESKLFAFIYKLFGSVPG-----------WDKKFTTE------- 340
Query: 365 DIEALPLPPEINNISAQ----KYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 419
+EA E +N +A+ + DV I T+ G GP + +++L++ K+GLPKE
Sbjct: 341 QLEAFNHQFESSNFTARELDLELQKDVARVILTQVGSGP---QETNESLIDAKTGLPKE 396
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1
PE=3 SV=2
Length = 397
Score = 311 bits (796), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 190/416 (45%), Positives = 249/416 (59%), Gaps = 25/416 (6%)
Query: 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
+ + + P NIA +KYWGKRD L LP N SISVTL + L T T+ A P +DR+W
Sbjct: 3 IYVASTTAPVNIATLKYWGKRDSMLNLPTNSSISVTLSQEDLRTLTSAATGPELAEDRLW 62
Query: 67 LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
LNGK SLG R Q CL ++R+ +E E + +W+ LHI S NNFPTAAGL
Sbjct: 63 LNGKPESLGNARTQQCLADLRALRRALETEEPDLP-RMSEWK---LHIVSENNFPTAAGL 118
Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
ASSAAGFA LV ++AKL L ++ S++S IAR+GSGSACRSL+GG+V W +G E +GSDS
Sbjct: 119 ASSAAGFAALVVAVAKLYGLPQDYSEISKIARKGSGSACRSLYGGYVAWEMGAEADGSDS 178
Query: 187 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246
AVQ+ D EHW ++ I VVS+ +K+T ST+GM+++V TS L + R VVP+R +M
Sbjct: 179 RAVQIADVEHWPEMRAAILVVSADRKDTPSTSGMQQTVHTSDLFKERVATVVPRRYGEMA 238
Query: 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVA 306
AI+ DF++FA+LT DSN FHA CLD+ PPIFYMNDTS RI+ N VA
Sbjct: 239 AAIRARDFATFARLTMQDSNSFHATCLDSFPPIFYMNDTSRRIVKLCHLINEFYNETIVA 298
Query: 307 YTFDAGPNAVL--IARNRKIATELLQRLLFFFPPNS--ETDLNSYVLGDKSILRDAGIDG 362
YTFDAGPNAVL +A N L L F N ET ++ + D + G
Sbjct: 299 YTFDAGPNAVLYYLAENE---ARLCGFLSAVFGANDGWETTFSTEQRATFAAQFDECVRG 355
Query: 363 MKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 418
A L E++ V I T+ G GP D +L++P++GLP+
Sbjct: 356 KL---ATDLDDELHR--------GVARLIFTKVGPGP---QDTKSSLIDPETGLPR 397
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1
Length = 393
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 188/419 (44%), Positives = 250/419 (59%), Gaps = 36/419 (8%)
Query: 4 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQD 63
+K V T P NIAVIKYWGKRD L LP N SISVTL D L T TT + S F+ D
Sbjct: 2 DKKVYQCTVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFEND 61
Query: 64 RMWLNGK-EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQK---LHLHIASFNN 119
+WLNG E R + C++E+R D+E+ E D K L LH+ S NN
Sbjct: 62 TLWLNGNAEEIFANKRLRVCVEELRKARLDLEE-------ENDDLDKIGALKLHVVSENN 114
Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
FPTAAGLASSAAG+A ++A+L +L +QLS IARQGSGSACRSLFGG+V W +G+
Sbjct: 115 FPTAAGLASSAAGYAAFCEAIARLYDLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMGE 174
Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239
+G+DS+AVQ+ E+W ++ + + V S+ +K SST GM+ +V +S L QHR + +VP
Sbjct: 175 LHSGADSVAVQVEPVENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVP 234
Query: 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299
+RI +M+ AI+ DF +FA+LT DSNQFHA CLDT PPIFY+NDTS +I VE N +
Sbjct: 235 QRIQEMKTAIRERDFETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINAT 294
Query: 300 VGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAG 359
G AYTFDAGPNAV ++F NSE LN+ ++ ++A
Sbjct: 295 AGKTIAAYTFDAGPNAV----------------IYFLEENSEIVLNTLY----AVTKNA- 333
Query: 360 IDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 418
+G + P +++ +A S ++ I TR G GP +L+ D L SG PK
Sbjct: 334 -EGWSK-QYGSSPVTVDSAAANIVSSGISRVILTRVGNGPRVLTIDES--LIDASGNPK 388
>sp|Q8R765|ISPE_THETN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=ispE PE=3 SV=1
Length = 287
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 112 LHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGG 171
+ I F N P AAGLA +A A + +L KL NL + ++ IA + L GG
Sbjct: 83 IKIKLFKNIPLAAGLAGGSADAAATIVALDKLWNLNLTEKEMEEIASEVGSDVPFCLKGG 142
>sp|B2TIX0|CH60_CLOBB 60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=groL PE=3 SV=1
Length = 540
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 75 GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIAS 116
GG Y N +KE+ DV+DTE GIKI K ++ IAS
Sbjct: 413 GGTAYINVIKEVEKLTSDVQDTELGIKIIVKSLEEPLRQIAS 454
>sp|Q8U0F3|KIME_PYRFU Mevalonate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=mvk PE=3 SV=1
Length = 334
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 102 IEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR--- 158
+E+ D + + + ++ + P AGL SSAA + +++KL+ L+ ++ +++ +
Sbjct: 91 LEEADKKNVGIKVSITSQIPVGAGLGSSAAVAVATIGAVSKLLGLELSKEEIAKMGHKTE 150
Query: 159 ---QGSGSACR---SLFGGFVKWILGK 179
QG+ S S GGF+ + GK
Sbjct: 151 LLVQGASSGIDPTVSAIGGFIFYEKGK 177
>sp|A4XLL8|ISPE_CALS8 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=ispE PE=3 SV=1
Length = 290
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 105 KDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164
K+ K+H+ N P +AGLA + A ++ L KL L +Q++L + R+
Sbjct: 80 KEGVKIHIQ----KNIPISAGLAGGSTDAAAVLRGLNKLFGLNLSQNELIELGREIGADV 135
Query: 165 CRSLFGG 171
L GG
Sbjct: 136 PFCLVGG 142
>sp|Q558Y6|PKS14_DICDI Probable polyketide synthase 14 OS=Dictyostelium discoideum GN=pks14
PE=3 SV=2
Length = 2998
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 286 SHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPN 339
S+R++ + R+ +S+G P + + + +A L++RN IA L + L+ P N
Sbjct: 2362 SNRVLDSLSRYRKSIGLPSICTNYGSVQSAGLVSRNESIAQLLDGQGLYPLPIN 2415
>sp|P0CV95|NES2_FRAAN (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial
OS=Fragaria ananassa PE=1 SV=1
Length = 578
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 77 GRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 128
G Y C E C +E+ EK I + +W+KL+ + S N FP LAS
Sbjct: 491 GSYVRCYLE-EHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPATITLAS 542
>sp|P0CV94|NES1_FRAAN (3S,6E)-nerolidol synthase 1 OS=Fragaria ananassa PE=1 SV=1
Length = 519
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 77 GRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 128
G Y C E C +E+ EK I + +W+KL+ + S N FP + LAS
Sbjct: 432 GSYVRCYLE-EHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPASFTLAS 483
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,890,936
Number of Sequences: 539616
Number of extensions: 6518303
Number of successful extensions: 15480
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15440
Number of HSP's gapped (non-prelim): 21
length of query: 420
length of database: 191,569,459
effective HSP length: 120
effective length of query: 300
effective length of database: 126,815,539
effective search space: 38044661700
effective search space used: 38044661700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)