Query 014714
Match_columns 420
No_of_seqs 288 out of 1433
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2833 Mevalonate pyrophospha 100.0 2E-110 3E-115 797.4 36.4 394 3-418 1-395 (395)
2 PLN02407 diphosphomevalonate d 100.0 8.8E-83 1.9E-87 628.4 35.3 337 7-343 1-339 (343)
3 TIGR01240 mevDPdecarb diphosph 100.0 2E-71 4.4E-76 548.3 31.8 303 10-336 1-304 (305)
4 COG3407 MVD1 Mevalonate pyroph 100.0 2.4E-67 5.2E-72 514.8 29.2 310 9-343 5-315 (329)
5 COG0083 ThrB Homoserine kinase 100.0 2.5E-35 5.3E-40 287.3 27.8 268 8-337 2-277 (299)
6 PTZ00299 homoserine kinase; Pr 100.0 5.7E-32 1.2E-36 270.5 25.9 274 8-338 6-302 (336)
7 PRK01212 homoserine kinase; Pr 100.0 1.1E-30 2.5E-35 258.2 26.7 270 8-336 2-280 (301)
8 TIGR00191 thrB homoserine kina 100.0 1.7E-29 3.6E-34 250.3 26.1 267 11-335 2-280 (302)
9 PLN02451 homoserine kinase 100.0 6.1E-29 1.3E-33 252.2 26.9 279 7-338 51-344 (370)
10 PRK14611 4-diphosphocytidyl-2- 100.0 1.1E-28 2.3E-33 241.5 24.6 254 9-323 3-256 (275)
11 PRK03188 4-diphosphocytidyl-2- 100.0 1E-28 2.2E-33 244.4 24.4 269 9-334 2-275 (300)
12 PRK14608 4-diphosphocytidyl-2- 100.0 5.8E-27 1.3E-31 230.9 26.5 266 8-336 7-279 (290)
13 PRK00128 ipk 4-diphosphocytidy 100.0 9.1E-27 2E-31 228.9 26.1 270 10-337 3-274 (286)
14 PRK14616 4-diphosphocytidyl-2- 100.0 7.2E-27 1.6E-31 229.9 25.2 271 8-339 4-277 (287)
15 PRK14615 4-diphosphocytidyl-2- 100.0 1.4E-26 3E-31 228.8 25.0 280 8-335 7-287 (296)
16 PRK02534 4-diphosphocytidyl-2- 100.0 3.4E-26 7.3E-31 227.7 27.5 281 10-338 4-293 (312)
17 COG1947 IspE 4-diphosphocytidy 100.0 9.8E-27 2.1E-31 225.9 22.6 269 8-338 4-275 (289)
18 PRK14613 4-diphosphocytidyl-2- 100.0 1.8E-26 3.9E-31 228.1 24.9 275 11-339 2-290 (297)
19 PRK14612 4-diphosphocytidyl-2- 99.9 3.2E-26 7E-31 224.1 23.3 260 10-337 5-266 (276)
20 TIGR00154 ispE 4-diphosphocyti 99.9 1.9E-25 4.1E-30 220.5 26.4 273 10-337 4-276 (293)
21 PRK14610 4-diphosphocytidyl-2- 99.9 2.5E-25 5.4E-30 218.6 23.8 269 8-338 4-273 (283)
22 PRK00650 4-diphosphocytidyl-2- 99.9 2.3E-25 4.9E-30 218.1 22.3 255 10-337 3-259 (288)
23 PRK00343 ipk 4-diphosphocytidy 99.9 1.6E-24 3.4E-29 211.7 27.5 256 8-337 7-264 (271)
24 TIGR00144 beta_RFAP_syn beta-R 99.9 1.1E-24 2.4E-29 217.8 27.0 272 10-338 3-304 (324)
25 PRK14614 4-diphosphocytidyl-2- 99.9 5.4E-24 1.2E-28 208.8 26.7 262 8-334 4-268 (280)
26 PRK14609 4-diphosphocytidyl-2- 99.9 6.4E-24 1.4E-28 207.2 23.1 251 9-323 2-254 (269)
27 PTZ00298 mevalonate kinase; Pr 99.9 3.3E-23 7.1E-28 207.6 25.4 286 8-339 9-313 (328)
28 PRK03926 mevalonate kinase; Pr 99.9 3.6E-22 7.9E-27 197.5 28.4 265 10-335 2-282 (302)
29 PRK05905 hypothetical protein; 99.9 5.9E-23 1.3E-27 198.4 20.6 247 9-320 2-254 (258)
30 COG1907 Predicted archaeal sug 99.9 1.9E-21 4.1E-26 186.0 23.0 281 10-337 4-290 (312)
31 PRK04181 4-diphosphocytidyl-2- 99.9 6.6E-22 1.4E-26 191.5 18.0 180 9-222 2-185 (257)
32 PRK01123 shikimate kinase; Pro 99.9 5.9E-20 1.3E-24 180.5 24.0 228 40-335 24-266 (282)
33 PRK03817 galactokinase; Provis 99.8 1.1E-18 2.5E-23 176.4 30.4 282 11-337 2-329 (351)
34 PRK00555 galactokinase; Provis 99.8 3E-18 6.5E-23 174.1 29.1 281 9-338 2-342 (363)
35 TIGR01920 Shik_kin_archae shik 99.8 1.2E-18 2.6E-23 169.4 24.3 226 40-335 18-254 (261)
36 TIGR00549 mevalon_kin mevalona 99.8 2.3E-18 5E-23 167.8 26.1 253 14-319 1-272 (273)
37 TIGR00131 gal_kin galactokinas 99.8 1.3E-17 2.8E-22 170.8 27.0 282 10-341 18-369 (386)
38 COG1577 ERG12 Mevalonate kinas 99.8 1.6E-17 3.4E-22 163.9 26.3 272 11-336 2-296 (307)
39 PRK05322 galactokinase; Provis 99.8 3.7E-17 7.9E-22 167.5 29.3 280 10-338 20-367 (387)
40 COG1685 Archaeal shikimate kin 99.8 9.2E-18 2E-22 159.4 19.6 248 9-335 2-260 (278)
41 PRK05101 galactokinase; Provis 99.8 1.1E-16 2.4E-21 163.7 28.4 281 10-341 21-365 (382)
42 TIGR01220 Pmev_kin_Gr_pos phos 99.8 4.8E-16 1E-20 157.7 29.5 288 11-334 2-344 (358)
43 COG0153 GalK Galactokinase [Ca 99.7 2.6E-15 5.7E-20 150.2 27.8 291 9-347 23-378 (390)
44 PLN02677 mevalonate kinase 99.6 2E-13 4.4E-18 139.4 26.4 272 9-320 2-345 (387)
45 PLN02521 galactokinase 99.6 6.4E-13 1.4E-17 139.8 29.8 142 10-175 49-224 (497)
46 PRK13412 fkp bifunctional fuco 99.6 1.4E-13 3.1E-18 152.5 25.9 210 110-335 725-951 (974)
47 KOG1537 Homoserine kinase [Ami 99.6 1.3E-14 2.8E-19 137.0 12.3 205 111-339 94-334 (355)
48 PLN02865 galactokinase 99.6 1.5E-12 3.3E-17 134.2 28.7 289 10-338 31-396 (423)
49 COG2605 Predicted kinase relat 99.4 9.7E-11 2.1E-15 112.9 22.5 282 11-336 3-314 (333)
50 COG1829 Predicted archaeal kin 99.4 1.2E-10 2.6E-15 111.6 22.4 243 9-321 2-254 (283)
51 PTZ00290 galactokinase; Provis 99.3 1.1E-09 2.4E-14 114.4 29.0 289 10-338 38-436 (468)
52 TIGR01219 Pmev_kin_ERG8 phosph 99.2 5.7E-09 1.2E-13 108.5 26.1 226 76-322 87-418 (454)
53 KOG1511 Mevalonate kinase MVK/ 99.2 6.1E-09 1.3E-13 102.7 23.7 283 11-336 6-360 (397)
54 PF00288 GHMP_kinases_N: GHMP 99.2 1.6E-11 3.5E-16 94.7 4.5 59 113-171 1-67 (67)
55 COG4542 PduX Protein involved 99.1 2E-08 4.4E-13 95.2 20.8 254 7-322 11-265 (293)
56 PF08544 GHMP_kinases_C: GHMP 98.7 2E-08 4.3E-13 80.3 6.3 82 245-337 1-84 (85)
57 KOG4644 L-fucose kinase [Carbo 96.9 0.031 6.7E-07 58.4 15.1 217 109-341 689-924 (948)
58 COG3890 ERG8 Phosphomevalonate 95.1 3.8 8.3E-05 40.3 21.1 52 123-174 107-171 (337)
59 KOG0631 Galactokinase [Carbohy 89.8 2.9 6.3E-05 44.0 10.7 48 110-157 141-191 (489)
60 KOG4519 Phosphomevalonate kina 75.9 27 0.00058 35.4 10.2 51 124-174 153-226 (459)
61 KOG0631 Galactokinase [Carbohy 37.5 83 0.0018 33.4 6.3 73 254-339 387-461 (489)
62 PF00382 TFIIB: Transcription 30.4 65 0.0014 24.4 3.3 30 129-158 36-65 (71)
63 TIGR00162 conserved hypothetic 27.2 88 0.0019 29.0 4.2 32 130-161 127-158 (188)
64 cd06006 R3H_unknown_2 R3H doma 23.3 2.5E+02 0.0054 21.1 5.2 34 281-319 24-57 (59)
65 TIGR00161 conserved hypothetic 21.4 1.3E+02 0.0027 29.0 4.2 29 132-160 185-213 (238)
No 1
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-110 Score=797.44 Aligned_cols=394 Identities=59% Similarity=0.920 Sum_probs=363.8
Q ss_pred cccceeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHH
Q 014714 3 AEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNC 82 (420)
Q Consensus 3 ~~~~~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~ 82 (420)
+++++.++||+||+|||+||||||||+.+|||.|||||+||+||+|++.||+.++++|++|++||||+++++.++|.++|
T Consensus 1 ~~k~~~~~t~taPvNIAvIKYWGKRD~~l~LP~N~SISvTL~~D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q~c 80 (395)
T KOG2833|consen 1 MDKPVAEVTATAPVNIAVIKYWGKRDEELNLPTNDSISVTLSQDDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQRC 80 (395)
T ss_pred CCCcceeEEeeccceeeeeeeccccchhhcCCcCCceeEEeccccceeeeeEeeccccccceeEECCceeccccHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC
Q 014714 83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG 162 (420)
Q Consensus 83 l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsG 162 (420)
++++|++++..++++.. + |....+++||.|+||||++|||+||||++||+++||+++|+++.+++||+.+||+|||
T Consensus 81 l~e~r~~~~d~~~~~~~--~--~~~~~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GSG 156 (395)
T KOG2833|consen 81 LREIRRLARDREESEAS--L--PSNGPLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGSG 156 (395)
T ss_pred HHHHHHHhhhhhhhhcc--c--CcCCCeeEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCc
Confidence 99999999887655442 2 2234689999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHH
Q 014714 163 SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRI 242 (420)
Q Consensus 163 sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~ 242 (420)
|||||+|||||.|.+|+..||+||.++|+.+..|||+++++|+|+++.+|+++||+|||++++||.++++|+++++++|+
T Consensus 157 SACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri 236 (395)
T KOG2833|consen 157 SACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRI 236 (395)
T ss_pred hhhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeecc
Q 014714 243 VQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNR 322 (420)
Q Consensus 243 ~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~ 322 (420)
.+|.+||.++||+.|++++|.|||+||++|+|+||||+|||+.+++||+++|++|+..|...+|||||||||+++|+.++
T Consensus 237 ~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~e 316 (395)
T KOG2833|consen 237 QQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLEE 316 (395)
T ss_pred HHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhCCCCCCCCcCccccCccchhhhccCCCcccccCCCCCcccc-cccccccCCCcceEEEeCCCCCcee
Q 014714 323 KIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVL 401 (420)
Q Consensus 323 ~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~vg~gp~~ 401 (420)
+..+ +++.+.+.||...+|+ ..|..|+.+.++..+.. .+.. .+.. .++|+|||+|+||.||+
T Consensus 317 ~~~~-~l~~~~~~f~~~p~~d-k~y~~~~~~~~~~~~~~-----------~~~~~~l~~---~~~vs~~I~t~vG~GP~- 379 (395)
T KOG2833|consen 317 NVSQ-LLAAVLKVFPPVPGWD-KTYGKGLLEQFKVAAES-----------SSIKDSLGS---QGGVSYIILTRVGGGPK- 379 (395)
T ss_pred hHHH-HHHHHHHhcCCCCCcc-ceeeeccccccCccccc-----------cchhhhccc---cCCeeEEEEecCCCCCc-
Confidence 9998 9999999999999988 77777765444422221 1211 2222 39999999999999999
Q ss_pred cCCCcccccCCCCCCCC
Q 014714 402 LSDDSKALLNPKSGLPK 418 (420)
Q Consensus 402 ~~~~~~~l~~~~~~~~~ 418 (420)
|.++.++|||+ .||||
T Consensus 380 l~~~~~~Li~~-~GlPk 395 (395)
T KOG2833|consen 380 LQEQNESLIDP-SGLPK 395 (395)
T ss_pred ccCchhhhcCC-CCCCC
Confidence 77788999998 59997
No 2
>PLN02407 diphosphomevalonate decarboxylase
Probab=100.00 E-value=8.8e-83 Score=628.39 Aligned_cols=337 Identities=83% Similarity=1.287 Sum_probs=306.7
Q ss_pred eeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHH
Q 014714 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI 86 (420)
Q Consensus 7 ~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~ 86 (420)
++++||+||+||||||||||||+.+|||.|+|||+||++++|||+|+|+++++++.|++||||++++....|+++|++.+
T Consensus 1 ~~~~ta~A~~NIALIKYWGKrD~~l~LP~nsSiSlTL~~~~~~T~Ttv~~~~~~~~D~~~LNG~~~~~~~~rv~~~l~~~ 80 (343)
T PLN02407 1 VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEISLSGGRYQNCLREI 80 (343)
T ss_pred CeEEEEEecceeeeehhcccccccccCCCCCeeEEEccCCcceeeEEEEECCCCCCCEEEECCEecCcccHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999988888999999998776566999999999
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhccCccc
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKEN-QSQLSAIARQGSGSAC 165 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls-~~eL~~iAr~gsGsa~ 165 (420)
|++++..++++.+..++++.+...+++|+++|+||+++|||||||++||++.|++++|+++++ .++|+.+||+||||+|
T Consensus 81 r~~~~~~~~~~~~~~i~~~~~~~~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~GSGSa~ 160 (343)
T PLN02407 81 RARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSAC 160 (343)
T ss_pred HHHhcccccccccccccccccccccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhccChHHH
Confidence 999877544444444444444456899999999999999999999999999999999999999 9999999999999999
Q ss_pred cccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHH
Q 014714 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM 245 (420)
Q Consensus 166 ~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l 245 (420)
||+|||||.|.+|...|+.|++++++.++.+||+++++++|++..+|+++||.||+.++.|||+|+.|+++++++++..|
T Consensus 161 rS~~Gg~v~w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv~TSp~~~~w~~~~~~~~~~~~ 240 (343)
T PLN02407 161 RSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQM 240 (343)
T ss_pred HHhhCCeEEecCCCCCCCCceeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHHhhhcChhHHHHHHhhhHHHHHHH
Confidence 99999999999997778899999999988899999999999999999999999999999999999999998679999999
Q ss_pred HHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchH
Q 014714 246 EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIA 325 (420)
Q Consensus 246 ~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~ 325 (420)
..||+++||+.|++++|.|+++||++|++++||++||+|.+.++|+.|+++|+..|...++||+||||||++|+.+++..
T Consensus 241 ~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~vl~~~~~~~ 320 (343)
T PLN02407 241 EEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVLIALNRKVA 320 (343)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCCCCEEEEEChhhhH
Confidence 99999999999999999999999999999999999999999999999999988767645999999999999999999987
Q ss_pred HHHHHHHHhhCCC-CCCCC
Q 014714 326 TELLQRLLFFFPP-NSETD 343 (420)
Q Consensus 326 ~~v~~~l~~~f~~-~~~~~ 343 (420)
++|++++.+.|++ ..+|+
T Consensus 321 ~~v~~~~~~~~~~~~~~~~ 339 (343)
T PLN02407 321 AQLLQRLLYYFPPSSDTDL 339 (343)
T ss_pred HHHHHHHHHhcCCCccccc
Confidence 5488766666644 44443
No 3
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=100.00 E-value=2e-71 Score=548.31 Aligned_cols=303 Identities=43% Similarity=0.660 Sum_probs=282.8
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC-CcchHHHHHHHHHH
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIRS 88 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~-~~~r~~~~l~~~r~ 88 (420)
+||+||+||||||||||||++++||.|+|||+||| .++|+|+|+.+++++.|++++||+.... ..+|++.|++.+|+
T Consensus 1 ~t~~a~~NIAliKYwGk~d~~~~lP~n~SisltLd--~~~T~ttv~~~~~~~~d~~~lnG~~~~~~~~~~v~~~l~~~~~ 78 (305)
T TIGR01240 1 ASVTAYVNIATIKYWGKRNTKLNLPTNSSISLTLS--QLRTLTSVAFADEFERDTFYLNGTLQHSIDNEKTSNCLDDFRQ 78 (305)
T ss_pred CceeccchhHHhhhcccccccccCCCCCeeEEEcC--CCccEEEEEECCCCCcceEEECCcCCCCcchHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999 4999999999988888999999976443 46689999999999
Q ss_pred HccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccccc
Q 014714 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 168 (420)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~sl 168 (420)
..+. ..+++|+++|+||+++|||||||++||++.|++++++++++.+||+++|++|+||+|||+
T Consensus 79 ~~~~----------------~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsGsa~~s~ 142 (305)
T TIGR01240 79 LRKE----------------QEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSACRSL 142 (305)
T ss_pred hcCC----------------CCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCeeeee
Confidence 8764 357999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHHHH
Q 014714 169 FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEA 248 (420)
Q Consensus 169 ~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~A 248 (420)
|||||.|..|. ++.++++++++.+.+|++++++++++|+.+|.++||++|+.+++++++|+.|++++ ..++..|+.|
T Consensus 143 ~GG~v~~~~g~--~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~gm~~~~~ts~~~~~~v~~~-~~~l~~~~~a 219 (305)
T TIGR01240 143 FGGYVAWEKGK--DDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEHV-VPDFEVXRKA 219 (305)
T ss_pred ecCeEEEEcCC--CCCCeeEEECCCccccccceEEEEEcCCCCCCCCCHHHHHHhhhcCccHHHHHHHH-HHHHHHHHHH
Confidence 99999999874 67899999999888999999999999999999999999999999999999999983 6679999999
Q ss_pred HHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHHH
Q 014714 249 IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATEL 328 (420)
Q Consensus 249 l~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~v 328 (420)
|+++||+.|++++|.|+++||++|++++||+.||+|.+.++|+.|+++|+ .|.. ++||+||||||++++++++.++ +
T Consensus 220 i~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~-~g~~-~~~T~DAGpNv~vl~~~~~~~~-v 296 (305)
T TIGR01240 220 IKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ-GGTI-CYFTMDAGPNVKVLYLAENLSK-L 296 (305)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHh-CCCc-EEEEEcCCCCEEEEEccccHHH-H
Confidence 99999999999999999999999999999999999999999999999975 4765 9999999999999999999888 9
Q ss_pred HHHHHhhC
Q 014714 329 LQRLLFFF 336 (420)
Q Consensus 329 ~~~l~~~f 336 (420)
.+.+.+.|
T Consensus 297 ~~~~~~~~ 304 (305)
T TIGR01240 297 FEFIYKLF 304 (305)
T ss_pred HHHHHHhc
Confidence 99888876
No 4
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=100.00 E-value=2.4e-67 Score=514.79 Aligned_cols=310 Identities=41% Similarity=0.636 Sum_probs=287.5
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEE-EEcCCCCcceEEEcCccccCCcchHHHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTV-AVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v-~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r 87 (420)
.+|++||+|||+||||||||+.+|+|.|+|||||++ ++++.|++ ++.++.+.|++||||+..+..++|+.+|++.+|
T Consensus 5 ~~t~~ay~nialIKywGk~D~~l~iP~~~SiS~t~~--df~t~t~~~~~~~~~~~D~~~lNG~~~~~~~~k~~~~ld~~R 82 (329)
T COG3407 5 IITASAYPNIALIKYWGKRDEALNIPLNSSISVTLE--DFSTTTTAEELTENDEEDTFILNGELSEDENEKARRVLDRFR 82 (329)
T ss_pred ceeeEecchhHHHHhccccchhhcCCCCCeeEEEec--cccceeEEEEecCCCCccEEEECCccCchHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999996 58888888 777777889999999987776789999999999
Q ss_pred HHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccc
Q 014714 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (420)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~s 167 (420)
+.++. .++++|+++|++|+++|||||||++||+++|++++++++++..+|+++||+||||+|||
T Consensus 83 ~~~~~----------------~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS 146 (329)
T COG3407 83 KEYGI----------------SFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGSASRS 146 (329)
T ss_pred Hhhcc----------------cceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhccchhhh
Confidence 97764 58999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHHH
Q 014714 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247 (420)
Q Consensus 168 l~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~ 247 (420)
+||||++|.+|. |.++.++++.+...|+++..+++++.+..|.++|+++|+.++.+|++|++|+.+. ...++.|..
T Consensus 147 ~~Gg~~~W~~~~---g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~~tS~~y~~w~~~~-~~~~~~m~~ 222 (329)
T COG3407 147 IFGGFVLWEKGE---GEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTAETSPFYDAWLEHS-EEDLEEMKE 222 (329)
T ss_pred hcCCeeEeccCC---CCccceeeeccccCccccceEEEEEccccCCCCchHHHHHHHHcChHHHHHHHHH-HHhHHHHHH
Confidence 999999999886 6888899999888899999999999999999999999999899999999999985 556699999
Q ss_pred HHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHH
Q 014714 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATE 327 (420)
Q Consensus 248 Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~ 327 (420)
+++++||+.|++++|.|++.||+++++++||++|+++++.++|+.|+++++. |- .++||+||||||++++.+++..+
T Consensus 223 ~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~-g~-~~~fT~DaGPnV~v~~~~~~l~~- 299 (329)
T COG3407 223 AIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKE-GN-AVYFTMDAGPNVKVITLEENLID- 299 (329)
T ss_pred HHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhc-CC-ceEEEEcCCCceEEEEecccHHH-
Confidence 9999999999999999999999999999999999999999999999999765 55 49999999999999999999988
Q ss_pred HHHHHHhhCCCCCCCC
Q 014714 328 LLQRLLFFFPPNSETD 343 (420)
Q Consensus 328 v~~~l~~~f~~~~~~~ 343 (420)
+++.+.+.+.....|+
T Consensus 300 ~~~~~~~~~~~~~~~~ 315 (329)
T COG3407 300 LLEILKTLECIDGSID 315 (329)
T ss_pred HHHHHhhcccccceee
Confidence 9999998887764443
No 5
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-35 Score=287.32 Aligned_cols=268 Identities=19% Similarity=0.199 Sum_probs=206.7
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc---ccCC-cchHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISLG-GGRYQNCL 83 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~---~~~~-~~r~~~~l 83 (420)
++++++||..+|++ .|+||++|++|+ +|..+.+....+ +.++...|.. ++.+ ++.+.+++
T Consensus 2 ~~~~v~aPASSANl-----------GpGFD~lGlAl~---~~~~~~v~~~~~--~~~i~~~g~~~~~iP~~~~n~~~~~~ 65 (299)
T COG0083 2 LMMKVRVPASSANL-----------GPGFDVLGLALD---LYNDVVVVEVVD--KFEIEVEGEGADKIPLDPENLVYQAA 65 (299)
T ss_pred ceEEEEEeeccccc-----------CCCccceeeecc---ccCcEEEEEecC--cEEEEEecccccCCCCCcceeHHHHH
Confidence 56899999999998 899999999999 788877766542 4566667743 3433 23555666
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC-
Q 014714 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG- 162 (420)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsG- 162 (420)
..+.+..+. +.+++|+++|+||.++|||||||.++|.+.|+|++++++|+.+++.++|..++|
T Consensus 66 ~~~~~~~~~----------------~~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgH 129 (299)
T COG0083 66 LKFLEALGI----------------EAGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGH 129 (299)
T ss_pred HHHHHHhCC----------------CccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence 666666553 234999999999999999999999999999999999999999999999999999
Q ss_pred --ccccccccCeEEEecccCCCCCCceEEEccCCCCCC-CceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhch
Q 014714 163 --SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN-DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239 (420)
Q Consensus 163 --sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp-~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~ 239 (420)
++++|++||++++... ..-...+++ |+ ++++++ ++|.. ..+|+.+|+++|++.-+++.+.+ .
T Consensus 130 pDNVapa~lGG~~l~~~~-----~~~~~~~v~----~~~~~~~v~-~iP~~---e~sT~~aR~vLP~~~~~~daV~n--~ 194 (299)
T COG0083 130 PDNVAPAVLGGLVLVEEE-----SGIISVKVP----FPSDLKLVV-VIPNF---EVSTAEARKVLPKSYSRKDAVFN--L 194 (299)
T ss_pred CchHHHHhhCCEEEEeec-----CCceEEEcc----CCcceEEEE-EeCCc---cccHHHHHHhccccCCHHHHHHH--H
Confidence 5699999999876542 223455664 55 566654 45542 35677799999998888888887 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEe
Q 014714 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIA 319 (420)
Q Consensus 240 ~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~ 319 (420)
.++..|+.||.++| ..++..+|+| .+|++++ ..+.|...++.+...+ .|++ +++.||||||+|+++
T Consensus 195 s~~a~lv~al~~~~-~~l~~~~~~D--~ihepyR------~~L~P~~~~v~~~a~~----~gA~-g~~lSGAGPTi~al~ 260 (299)
T COG0083 195 SRAALLVAALLEGD-PELLRAMMKD--VIHEPYR------AKLVPGYAEVREAALE----AGAL-GATLSGAGPTVFALA 260 (299)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHhcc--ccchhhh------hhhCccHHHHHHHHhh----CCce-EEEEecCCCeEEEEe
Confidence 89999999999999 5566667775 8998655 4567888888765554 7998 777889999999999
Q ss_pred eccchHHHHHHHHHhhCC
Q 014714 320 RNRKIATELLQRLLFFFP 337 (420)
Q Consensus 320 ~~~~~~~~v~~~l~~~f~ 337 (420)
++. .++.+...+++.+.
T Consensus 261 ~~~-~~e~~~~~~~~~~~ 277 (299)
T COG0083 261 DES-DAEKAAALLEELYE 277 (299)
T ss_pred ccc-hhhHHHHHHHHHHH
Confidence 986 33325555555443
No 6
>PTZ00299 homoserine kinase; Provisional
Probab=100.00 E-value=5.7e-32 Score=270.50 Aligned_cols=274 Identities=17% Similarity=0.197 Sum_probs=201.5
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccc---cC-CcchHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI---SL-GGGRYQNCL 83 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~---~~-~~~r~~~~l 83 (420)
.++++++|..+|++ .|+||||+++|+ ||++++++.++ ..++.++|... +. +.+.+.+++
T Consensus 6 ~~~~v~vPATsANl-----------GpGFDsLGlAL~---lyd~v~v~~~~---~~~i~i~G~~~~~lp~~~~nlv~~a~ 68 (336)
T PTZ00299 6 KKVVLRVPATTANI-----------GPAYDTLGMALS---IFMELTVEHAD---AFSMTVEGEGSEHISTDEDNMVVQAC 68 (336)
T ss_pred ceEEEEEecccccc-----------cccHHHHhhhcc---cCcEEEEEECC---CCEEEEecCCcCCCCCCcchHHHHHH
Confidence 45899999999998 899999999998 99999998754 34567777542 22 234455555
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHhc
Q 014714 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKEN---QSQLSAIARQG 160 (420)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls---~~eL~~iAr~g 160 (420)
+.+.+.++.. ...+++|+++|+||.++|||||||+++|++.|+|++++++++ .+||.++|.++
T Consensus 69 ~~~~~~~~~~--------------~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~ 134 (336)
T PTZ00299 69 RLAFEEYAHK--------------SMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKF 134 (336)
T ss_pred HHHHHHhcCC--------------CCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhh
Confidence 5554444320 024799999999999999999999999999999999999995 78999999988
Q ss_pred cC---ccccccccCeEEEe-cccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhh
Q 014714 161 SG---SACRSLFGGFVKWI-LGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKE 236 (420)
Q Consensus 161 sG---sa~~sl~GG~V~~~-~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~ 236 (420)
+| ++++|++||+++.. .+. .+....+++.+ +++++++ ++|+..-++ +|+.+|+.+++...+++.+.+
T Consensus 135 EGHpDNVapal~GG~~~~~~~~~----ge~~~~~i~~~---~~~~~vv-~iP~~~~~~-sT~~aR~vLP~~v~~~dav~n 205 (336)
T PTZ00299 135 EGHPDNAAPAIYGGIQLVYKKDN----GRFLTYRVPTP---PNLSVVL-FVPHNKMKA-NTHVTRNLIPTSVSLEDAVFN 205 (336)
T ss_pred cCCcccHHHHHhCCEEEEEecCC----CceEEEecCCC---CCeEEEE-EECCCCccc-cHHHHHhhCcccCcHHHHHHh
Confidence 77 47999999998643 221 11223455432 3566654 446531123 557889988876555555555
Q ss_pred hchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCcc-ccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCce
Q 014714 237 VVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIF-YMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNA 315 (420)
Q Consensus 237 ~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~-yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv 315 (420)
..+...++.+|.++|++.+.. +. +.+|+ |++. .+.|...++++.+.+ .|++ ++++||||||+
T Consensus 206 --~~~~~~lv~al~~~d~~ll~~--~~--D~lhe------p~R~~~liP~~~~v~~~~~~----~Ga~-g~~lSGSGPTv 268 (336)
T PTZ00299 206 --ISRTSILVLALSTGDLRMLKS--CS--DKLHE------QQRSDALFPHFRPCVKAARE----AGAH-YAFLSGAGPSV 268 (336)
T ss_pred --hhHHHHHHHHHHhCCHHHHHh--ch--hcccC------cccccccCccHHHHHHHHHH----CCCe-EEEEEchhhhh
Confidence 567788999999999999964 34 47897 5553 678888888888865 6997 77788999999
Q ss_pred EEEeec-----------cchHHHHHHHHHhhCCC
Q 014714 316 VLIARN-----------RKIATELLQRLLFFFPP 338 (420)
Q Consensus 316 ~~i~~~-----------~~~~~~v~~~l~~~f~~ 338 (420)
|+++.+ ++..+++.++|.+.|..
T Consensus 269 ~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 302 (336)
T PTZ00299 269 CALVGGRHGDPLTQPREERKAESVAEAMIKAAEA 302 (336)
T ss_pred eEEeccccccccccccchhHHHHHHHHHHHHHHH
Confidence 999983 33333488888887743
No 7
>PRK01212 homoserine kinase; Provisional
Probab=99.98 E-value=1.1e-30 Score=258.21 Aligned_cols=270 Identities=19% Similarity=0.212 Sum_probs=197.9
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCC-cceEEEcCcc---ccC--CcchHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFD-QDRMWLNGKE---ISL--GGGRYQN 81 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~-~d~i~lnG~~---~~~--~~~r~~~ 81 (420)
.++++++|...|++ .|+||++|++|+ +|++.+|+..++.. ..++.+.|.. .+. +++.+.+
T Consensus 2 ~~~~v~~pat~anl-----------g~gfd~lG~al~---~~d~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Nli~~ 67 (301)
T PRK01212 2 MMVKVRVPATSANL-----------GPGFDSLGLALS---LYDEVLVGDVVSVEAEFSIEVIGEGADKLPLDPEKNLVYQ 67 (301)
T ss_pred ceEEEEEecchhhc-----------ccChhhhhcccc---CccEEEEEEccCCCCceEEEEEecCCCcCCCCCccccHHH
Confidence 35788999999998 799999999997 99999997643200 2235554432 222 2567888
Q ss_pred HHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 014714 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (420)
Q Consensus 82 ~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gs 161 (420)
+++.+++.++. ..+++|+++|+||.++|||||||+++|++.|++++++++++.++|.++|++++
T Consensus 68 a~~~~~~~~~~----------------~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e 131 (301)
T PRK01212 68 AALKFLEKLGK----------------PPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGE 131 (301)
T ss_pred HHHHHHHHcCC----------------CCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 88888777653 35799999999999999999999999999999999999999999999999999
Q ss_pred C---ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhc
Q 014714 162 G---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVV 238 (420)
Q Consensus 162 G---sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~ 238 (420)
+ ++++|++||++++..+. .....+++.+ ++++++ ++.|. ..++|.+.+ +.+++...++..+.+
T Consensus 132 ~~~ddv~~~l~GG~~~~~~g~-----g~~~~~~~~~---~~~~~v-lv~p~--~~~sT~~a~-~~l~~~~~~~~~~~~-- 197 (301)
T PRK01212 132 GHPDNVAPALLGGLVLALEEN-----GVISVKIPVF---DDLKWV-VAIPN--IELSTAEAR-AVLPKQYSLKDAVFN-- 197 (301)
T ss_pred CCHHHHHHHHhCCEEEEEECC-----ceEEEEecCC---CCeEEE-EEECC--CcCCHHHHH-HhCcCcCCHHHHHHH--
Confidence 8 67899999998764332 1235555432 344544 44554 355555544 444443223333443
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEE
Q 014714 239 PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLI 318 (420)
Q Consensus 239 ~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i 318 (420)
..++..++.+|.++|++.|++.+ . |.+|+.++ ..+.|...++++.+.+ .|+. ++.+|||||++|++
T Consensus 198 ~~~~~~l~~al~~~d~~~~~~~~-~--~~~~~~~~------~~~~p~~~~i~~~~~~----~Ga~-g~~~SGsGptv~~l 263 (301)
T PRK01212 198 SSRAALLVAALYTGDYELAGRAM-K--DVLHEPYR------AKLIPGFAEVRQAALE----AGAL-GAGISGAGPTVFAL 263 (301)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHh-c--hhheHHhH------HhhCCCHHHHHHHHHH----CCCe-EEEEEchhhheeEE
Confidence 45778899999999999999976 3 57887552 2345677777777654 6887 66678999999999
Q ss_pred eeccchHHHHHHHHHhhC
Q 014714 319 ARNRKIATELLQRLLFFF 336 (420)
Q Consensus 319 ~~~~~~~~~v~~~l~~~f 336 (420)
+++++..+ +.+.+++.|
T Consensus 264 ~~~~~~~~-~~~~l~~~~ 280 (301)
T PRK01212 264 CDKEDAEK-VADALQKAF 280 (301)
T ss_pred eccccHHH-HHHHHHHhh
Confidence 98776644 888888876
No 8
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.97 E-value=1.7e-29 Score=250.30 Aligned_cols=267 Identities=16% Similarity=0.155 Sum_probs=186.5
Q ss_pred EEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEE----cCCCCcceEEEcCcc---ccC--CcchHHH
Q 014714 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAV----SPSFDQDRMWLNGKE---ISL--GGGRYQN 81 (420)
Q Consensus 11 ~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~----~~~~~~d~i~lnG~~---~~~--~~~r~~~ 81 (420)
++++|..+|++ .|+|||++++|+ +|.+++++. .... .++.+.|.. .+. +++.+.+
T Consensus 2 ~v~vpatsaNl-----------g~GfD~lg~al~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~Nlv~~ 65 (302)
T TIGR00191 2 RVKVPASSANL-----------GPGFDVLGAALS---LYLGLTVTDVVAQESDD--TEIEAEGEGVEKIPTEPTDNLIYQ 65 (302)
T ss_pred EEEEecchhcc-----------ccChhhhhhhcc---ccceEEEEeeecccCCC--ceEEEEecccccCCCCcccccHHH
Confidence 67889999998 899999999999 999888874 3211 135554432 222 2456777
Q ss_pred HHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 014714 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (420)
Q Consensus 82 ~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gs 161 (420)
+++.+++.++. ...+++|+++++||.++|||||||.++|++.|++++++++++.++|.++|.+++
T Consensus 66 a~~~~~~~~g~---------------~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E 130 (302)
T TIGR00191 66 VAKRFLDQLGI---------------RMPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELE 130 (302)
T ss_pred HHHHHHHHcCC---------------CCCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhc
Confidence 88877777653 014789999999999999999999999999999999999999999999999998
Q ss_pred C---ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhc
Q 014714 162 G---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVV 238 (420)
Q Consensus 162 G---sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~ 238 (420)
+ ++++|+|||++++.... ......+++. .+++++++ ++|. ..++ |..+++.++...-..+.+.+
T Consensus 131 ~h~Dnv~~~l~GG~~~~~~~~----~~~~~~~~~~---~~~~~~vl-~~p~--~~~s-T~~a~~~lp~~~~~~~~v~~-- 197 (302)
T TIGR00191 131 GHPDNVAPALLGGFQLAFVED----DKLEVLKIPI---FSKLDWVL-AIPN--IEVS-TAEARAVLPKAYPRQDLVFN-- 197 (302)
T ss_pred CCcccHHHHhccCEEEEEEcC----CceEEEEeCC---CCCEEEEE-EECC--Cccc-HHHHHHhCcccCCHHHHHHH--
Confidence 7 47889999998764321 1111222221 14556554 4454 3454 44455555443222333333
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEE
Q 014714 239 PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLI 318 (420)
Q Consensus 239 ~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i 318 (420)
..++..+..+|.+++++ +++.+++ +++|+.++ .-+.|...++++.+.+ .|++ ++.+|||||+++++
T Consensus 198 ~~~~~~l~~al~~~~~~-l~~~~~~--d~l~e~~~------~~l~p~l~~i~~~~~~----~Ga~-g~~lSGsGptv~al 263 (302)
T TIGR00191 198 LSHLAGLVHAIYQKKPD-LGAIMMK--DRIHQPYR------ESLIPNLFKIKQAALE----KGAY-GITISGSGPTILAM 263 (302)
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHcc--cccchhhH------hhhCCCHHHHHHHHHH----CCCe-EEEEEchhhhheEE
Confidence 44667788999999865 5565555 47887655 3446777777777654 6887 66678999999999
Q ss_pred eeccchHHHHHHHHHhh
Q 014714 319 ARNRKIATELLQRLLFF 335 (420)
Q Consensus 319 ~~~~~~~~~v~~~l~~~ 335 (420)
+++++.++.+.+.+...
T Consensus 264 ~~~~~~~~~~~~~~~~~ 280 (302)
T TIGR00191 264 ADEEFAEQKEQDLLEVL 280 (302)
T ss_pred ecchhhHHHHHHHHHHH
Confidence 98776554344555444
No 9
>PLN02451 homoserine kinase
Probab=99.97 E-value=6.1e-29 Score=252.24 Aligned_cols=279 Identities=18% Similarity=0.171 Sum_probs=196.0
Q ss_pred eeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCC--CCcceEE-EcCcc--ccCC--cchH
Q 014714 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS--FDQDRMW-LNGKE--ISLG--GGRY 79 (420)
Q Consensus 7 ~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~--~~~d~i~-lnG~~--~~~~--~~r~ 79 (420)
+.+++++||..||++ .|++|++++++| .||++++++..++ ..+.+|. +.|.. .+.+ ++.+
T Consensus 51 ~~~~~~~aPA~~ANL-----------GpgfD~lG~a~d--~l~d~v~~~~~~~~~~~~~~i~~~~g~~~~l~~~~~~Nlv 117 (370)
T PLN02451 51 FTSVKAFAPATVANL-----------GPGFDFLGCAVD--GLGDFVTARVDPGVRPGEVSISEITGDTGRLSKDPLRNCA 117 (370)
T ss_pred cceEEEEeccchhhc-----------ccChhhhhhhhc--cCcCEEEEEECCCCCcccEEEEEeccccccCCCCcccCcH
Confidence 456899999999998 799999999999 6999999987642 1123444 33432 2222 4556
Q ss_pred HHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 014714 80 QNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ 159 (420)
Q Consensus 80 ~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~ 159 (420)
.++++.+.+..+. ...+++|+++++||.++|||||||.++|++.|+|++++.+++.+||.++|.+
T Consensus 118 ~~a~~~~~~~~g~---------------~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~ 182 (370)
T PLN02451 118 GIAAIATMKLLGI---------------RSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLE 182 (370)
T ss_pred HHHHHHHHHHcCC---------------CCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 6677777666543 1358999999999999999999999999999999999999999999999988
Q ss_pred ccCc--------cccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHH
Q 014714 160 GSGS--------ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQ 231 (420)
Q Consensus 160 gsGs--------a~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~ 231 (420)
.++. +++|++||+++..... +. ...++..+ .-++++++ +++|.. .+ +|..+++.++....+.
T Consensus 183 ~E~~v~g~h~Dnva~a~~GG~v~~~~~~---~~--~~~~~~~p-~~~~~~~V-lv~P~~--~~-sT~~ar~~lp~~~~~~ 252 (370)
T PLN02451 183 SEAKVSGYHADNIAPALMGGFVLIRSYE---PL--HLIPLRFP-SAKDLFFV-LVSPDF--EA-PTKKMRAALPKEIPMK 252 (370)
T ss_pred HhchhcCCCccchhHhhcCCEEEEEecC---CC--eEEEeecC-CCCCeEEE-EEcCCC--Cc-cHHHHHHHHhhhcchh
Confidence 8763 4567999998643211 11 12222211 00244544 455542 34 5566666555332222
Q ss_pred HHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCC
Q 014714 232 HRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDA 311 (420)
Q Consensus 232 ~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgA 311 (420)
..+.+ ..++..++.+|.++|++.+++.+.+ +++|+.+ +..+.|...++++.+.+ .|+. ++.+|||
T Consensus 253 ~~v~~--~~~~~~l~~al~~~d~~~l~~~m~n--D~~~e~~------r~~~~P~l~~l~~~~~~----~GA~-ga~mSGS 317 (370)
T PLN02451 253 HHVWN--CSQAAALVAAILQGDAVLLGEALSS--DKIVEPT------RAPLIPGMEAVKKAALE----AGAY-GCTISGA 317 (370)
T ss_pred hHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhHHH------HhhhCccHHHHHHHHHH----CCCe-EEEEEcc
Confidence 22322 3466788999999999999998654 4667644 34567888888887764 6887 5667799
Q ss_pred CCceEEEeeccchHHHHHHHHHhhCCC
Q 014714 312 GPNAVLIARNRKIATELLQRLLFFFPP 338 (420)
Q Consensus 312 GPtv~~i~~~~~~~~~v~~~l~~~f~~ 338 (420)
|||+|+++++++..+++.+.+++.|..
T Consensus 318 Gptvfal~~~~~~a~~i~~~l~~~~~~ 344 (370)
T PLN02451 318 GPTAVAVIDDEEKGEEVGERMVEAFRK 344 (370)
T ss_pred chheEEEEcCHHHHHHHHHHHHHHHHH
Confidence 999999998765454588898887743
No 10
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=1.1e-28 Score=241.47 Aligned_cols=254 Identities=15% Similarity=0.157 Sum_probs=186.1
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRS 88 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r~ 88 (420)
.+++.|.+|+.| +--|||.++|| ...|+.++++ ||++++++.++ ..++..++...+.+.+.+.++++.+++
T Consensus 3 ~~~a~aKiNL~L-~i~~kr~dgyH--~l~s~~~ai~---l~d~v~i~~~~---~~~i~~~~~~~~~~~n~v~~a~~~~~~ 73 (275)
T PRK14611 3 VLLSPAKVNLGL-WILGKRPDGYH--EIFTIYHTID---LYDRIYIKEHH---TLEVKTSSPQIKEEENIVYKALRLFER 73 (275)
T ss_pred eeeecceEEeee-ccCcCCCCCcc--hhhheeEecc---CCcEEEEEECC---cEEEEeCCCCCCCcccHHHHHHHHHHH
Confidence 467889999998 55699999999 5889999998 99999997643 345656554333346778888888888
Q ss_pred HccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccccc
Q 014714 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 168 (420)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~sl 168 (420)
.++. ..+++|+++|+||+++|||||||++||++.|++++++++++.++|.++|.++++++++++
T Consensus 74 ~~g~----------------~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~D~~~~~ 137 (275)
T PRK14611 74 YTGI----------------DINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISADAPFFL 137 (275)
T ss_pred HhCC----------------CCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCeee
Confidence 7653 357999999999999999999999999999999999999999999999999999998899
Q ss_pred ccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHHHH
Q 014714 169 FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEA 248 (420)
Q Consensus 169 ~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~A 248 (420)
+||++.+. +. |. ...++... ++.+++ ++.|. ..++|.+ +.+.++. .+..+ ..++..++.+
T Consensus 138 ~Gg~~~~~-~~---g~--~~~~~~~~---~~~~~v-v~~p~--~~~sT~~-~~~~l~~-----~~~~~--~~~~~~l~~~ 197 (275)
T PRK14611 138 KGGFALGR-GI---GD--KLEFLEKP---ISREIT-LVYPN--IKSSTGR-VYSKVTK-----QILTN--KEDLNIIISL 197 (275)
T ss_pred cCCeEEEe-cc---Cc--eeEECCcC---CCcEEE-EEeCC--CCCChHH-HHHhcch-----hhccC--cchHHHHHHH
Confidence 99998653 22 11 23344311 223443 44454 2454444 4433321 11222 4577888999
Q ss_pred HHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccc
Q 014714 249 IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 323 (420)
Q Consensus 249 l~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~ 323 (420)
+.++|++.+...+. |.||++++.. .|...++++.++. .|. ++.+||||||+|+++.+++
T Consensus 198 l~~~~~~~~~~~~~---n~l~~~~~~~-------~P~l~~~~~~l~~----~~~--~~~~SGSG~tvf~l~~~~~ 256 (275)
T PRK14611 198 LREGEEKKIEEVIE---NTLGEIALEL-------YPEIKEVYRFLEY----LGY--KPFVSGSGSSVYVFGKPSE 256 (275)
T ss_pred HHcCCHHHHHHhcC---CcccHHHHHH-------CHHHHHHHHHHHh----CCC--CEEEeCccccceeEeCCHH
Confidence 99999998887653 6899988654 4566677666543 343 4557899999999995443
No 11
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.97 E-value=1e-28 Score=244.38 Aligned_cols=269 Identities=16% Similarity=0.180 Sum_probs=192.7
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc---ccC-CcchHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISL-GGGRYQNCLK 84 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~---~~~-~~~r~~~~l~ 84 (420)
++.+.|.+|+.| .--|||+++|| ..+|++++|+ ||++++++.++ +.++.++|.. .+. +++.+.++++
T Consensus 2 ~~~a~aKiNl~L-~i~~kr~dgyH--~l~s~~~ai~---l~d~v~i~~~~---~~~i~~~~~~~~~~~~~~~nl~~~~~~ 72 (300)
T PRK03188 2 TVRAPAKVNLHL-GVGPLRDDGYH--ELATVFQAVS---LYDEVTVTAAD---VLSVEVSGEGADQVPTDESNLAWRAAE 72 (300)
T ss_pred eEeecceEEEee-ccCCcCCCCcc--chHhhheehh---hccEEEEEECC---CcEEEEecCCccCCCCCCccHHHHHHH
Confidence 357888888888 45699999999 5899999998 99999998753 3467776642 222 3556777888
Q ss_pred HHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc
Q 014714 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (420)
Q Consensus 85 ~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa 164 (420)
.+++.++. ..+++|+++++||+++|||||||+++|+++|++++++.+++.++|.++|.+++.++
T Consensus 73 ~~~~~~~~----------------~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig~dv 136 (300)
T PRK03188 73 LLAEHVGR----------------APDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELGSDV 136 (300)
T ss_pred HHHHHhCC----------------CCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 88777653 34789999999999999999999999999999999999999999999999988888
Q ss_pred ccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHH-HHhhhchHHHH
Q 014714 165 CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQH-RAKEVVPKRIV 243 (420)
Q Consensus 165 ~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~-~~~~~~~~~~~ 243 (420)
+++++||+++.. +. |. ...++... +++.++++ +|+. +++|++.++. ++. +... .+. ...+..
T Consensus 137 ~~~~~GG~~~~~-~~---g~--~~~~~~~~---~~~~~~lv-~p~~--~~sT~~~~~~-l~~--~~~~~~~~--~~~~~~ 199 (300)
T PRK03188 137 PFALLGGTALGT-GR---GE--QLAPVLAR---GTFHWVLA-FADG--GLSTPAVFRE-LDR--LREAGDPP--RLGEPD 199 (300)
T ss_pred chhhcCCeEEEE-ec---CC--EEEECCCC---CCcEEEEE-eCCC--CCCHHHHHHh-chh--hhcccccc--ccccHH
Confidence 899999998643 32 11 22333221 34444443 4543 5666554432 321 1110 111 134578
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccc
Q 014714 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 323 (420)
Q Consensus 244 ~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~ 323 (420)
.++.++.++|++.|++.+.+ .++. +...+.|...++++.+.+ .|++ ++.+|||||++|+++++++
T Consensus 200 ~~~~al~~~d~~~l~~~~~n---~le~-------~~~~~~p~l~~l~~~~~~----~Gal-ga~lSGsG~tv~~l~~~~~ 264 (300)
T PRK03188 200 PLLAALRAGDPAQLAPLLGN---DLQA-------AALSLRPSLRRTLRAGEE----AGAL-AGIVSGSGPTCAFLCADAD 264 (300)
T ss_pred HHHHHHHcCCHHHHHHHhhC---cCHH-------HHHHhCchHHHHHHHHHH----CCCC-EEEEEccccceEEEeCCHH
Confidence 89999999999999997642 3332 333456777777777754 6887 5667799999999998755
Q ss_pred hHHHHHHHHHh
Q 014714 324 IATELLQRLLF 334 (420)
Q Consensus 324 ~~~~v~~~l~~ 334 (420)
..+++.+.+.+
T Consensus 265 ~~~~~~~~l~~ 275 (300)
T PRK03188 265 SAVDVAAALSG 275 (300)
T ss_pred HHHHHHHHHHh
Confidence 44436666655
No 12
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.96 E-value=5.8e-27 Score=230.91 Aligned_cols=266 Identities=15% Similarity=0.115 Sum_probs=178.4
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc---ccC-CcchHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISL-GGGRYQNCL 83 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~---~~~-~~~r~~~~l 83 (420)
..+.|.|.+|+.| +--|||+++|| ..+|+..+++ |+++.+++..+ .+.+.+.|.. .+. +++.+.+++
T Consensus 7 ~~~~a~aKiNL~L-~i~~kr~dGyH--~l~s~~~~i~---l~D~l~i~~~~---~~~i~~~~~~~~~ip~~~~Nlv~ka~ 77 (290)
T PRK14608 7 LTEFAPAKINLAL-HVTGRRADGYH--LLESLVAFAD---VGDRLTLEPAE---ALSLTVSGPFAAGLGDGDDNLVLRAA 77 (290)
T ss_pred EEEEeceeEEeee-ccCCCCCCCCc--ceeEEEEECC---CCcEEEEEECC---CCcEEEeCCCccCCCCCCCcHHHHHH
Confidence 3455677777776 55799999999 5899999998 99999998654 2345554432 222 256677777
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 014714 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (420)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGs 163 (420)
+.+++..+. ...+++|+++|+||+++|||||||++||++.++|++++++++.+|+.++|.+.+++
T Consensus 78 ~~~~~~~g~---------------~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~d 142 (290)
T PRK14608 78 RALRARVGP---------------GLPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGAD 142 (290)
T ss_pred HHHHHHhCC---------------CCCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 877776642 02478999999999999999999999999999999999999999999999999899
Q ss_pred cccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccch--hHHHHHhhhchHH
Q 014714 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSL--LLQHRAKEVVPKR 241 (420)
Q Consensus 164 a~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~--~~~~~~~~~~~~~ 241 (420)
++++++||++.. .|. |. ..++++. ++++++++ +.|. ..++|. .+++.++... .....+.+ ..+
T Consensus 143 v~~~l~gg~~~~-~g~---g~--~~~~l~~---~~~~~~vv-~~p~--~~~sT~-~~~~~l~~~~~~~~~~~~~~--~~~ 207 (290)
T PRK14608 143 VPVCLDSRPLIM-RGI---GE--ELTPLPG---LPSLPAVL-VNPG--VPVATP-DVFRALGLRDGPPLPGAPDP--LAS 207 (290)
T ss_pred cchhhcCCeEEE-Eec---CC--EeEECCC---CCCcEEEE-ECCC--CCcChH-HHHHhhccccCCcchhhhhh--hhh
Confidence 999999999753 332 11 1344432 35666544 4454 356554 4444443211 00000011 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhc-CCCcEEEeeCCCCceEEEee
Q 014714 242 IVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVAYTFDAGPNAVLIAR 320 (420)
Q Consensus 242 ~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~-Ga~~~a~tsgAGPtv~~i~~ 320 (420)
...+..++.. ..|.|... .+.+.|...++.+.+.+ . |+. ++.+||||||+|+++.
T Consensus 208 ~~~l~~~~~~------------~~ndle~~-------~~~l~p~l~~i~~~~~~----~~Ga~-~~~lSGSGstvf~l~~ 263 (290)
T PRK14608 208 ADALLAALAA------------TRNDLEPP-------ALALAPVIGEVLAALRA----QPGAL-LARMSGSGATCFALFA 263 (290)
T ss_pred hhhHHHHHHh------------ccCccHHH-------HHHcCcHHHHHHHHHHh----cCCCC-eeEEeccccCeEEEeC
Confidence 2223333221 11344333 33456777777777754 6 887 6668899999999998
Q ss_pred ccchHHHHHHHHHhhC
Q 014714 321 NRKIATELLQRLLFFF 336 (420)
Q Consensus 321 ~~~~~~~v~~~l~~~f 336 (420)
+++..+++.+.+++.+
T Consensus 264 ~~~~a~~~~~~l~~~~ 279 (290)
T PRK14608 264 DEAAAEAAAAAIAAAH 279 (290)
T ss_pred CHHHHHHHHHHhHhhC
Confidence 7664544888887654
No 13
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.96 E-value=9.1e-27 Score=228.85 Aligned_cols=270 Identities=19% Similarity=0.208 Sum_probs=184.7
Q ss_pred EEEEecceeEE-EeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC-CcchHHHHHHHHH
Q 014714 10 VTAQTPTNIAV-IKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIR 87 (420)
Q Consensus 10 ~~~~Ap~nIa~-ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~-~~~r~~~~l~~~r 87 (420)
++++||..|.+ ++-.|+|.++||. ..||.++|+ +|++++|+..++ ...++..+....+. +.+.+.++++.++
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~--l~si~~ai~---l~~~v~v~~~~~-~~~~i~~~~~~~~~~~~n~~~~~~~~~~ 76 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHE--VEMIMQTID---LADRLEIEKLKE-DGIVVESNNRYVPNDERNLAYKAAKLLK 76 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcce--eheeeEecC---CCcEEEEEECCC-CCEEEEeCCCCCCCCCCcHHHHHHHHHH
Confidence 44555555533 2446999999984 689999998 899999986542 12233323222222 3456777777777
Q ss_pred HHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccc
Q 014714 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (420)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~s 167 (420)
+.++. ..+++|+++++||.++|||||||.++|++.|++++++.+++.+|+.++|.+.+.+++++
T Consensus 77 ~~~~~----------------~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~ 140 (286)
T PRK00128 77 ERYNI----------------KQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGSDVPFC 140 (286)
T ss_pred HhcCC----------------CCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCCCCCeE
Confidence 76543 34789999999999999999999999999999999999999999999999988899999
Q ss_pred cccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHHH
Q 014714 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247 (420)
Q Consensus 168 l~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~ 247 (420)
++||++... +. |. ...+++. .++++++ ++.|. ..++|.+ +.+.++. .+. ....+..++.
T Consensus 141 ~~Gg~~~~~-~~---g~--~~~~~~~---~~~~~~v-v~~p~--~~~~T~~-~~~~~~~-----~~~---~~~~~~~~~~ 199 (286)
T PRK00128 141 IYGGTALAT-GR---GE--KITPLKS---PPSCWVV-LAKPD--IGVSTKD-VYKNLDL-----DKI---SHPDTEKLIE 199 (286)
T ss_pred eeCCeEEEe-cC---Cc--ccccCCC---CCCcEEE-EEcCC--CCCCHHH-HHhcCcc-----ccc---cCcchHHHHH
Confidence 999998643 32 11 1233321 2456644 34454 3454443 3322211 011 1335678889
Q ss_pred HHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHH
Q 014714 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATE 327 (420)
Q Consensus 248 Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~ 327 (420)
++.++|++.+++++ . |.|+..... ..|...++++.+.+ .|++ ++.+|||||++|+++.+++..++
T Consensus 200 ~l~~~d~~~~~~~~-~--n~l~~~~~~-------~~p~l~~l~~~~~~----~Ga~-g~~lSGsG~sv~~l~~~~~~~~~ 264 (286)
T PRK00128 200 AIEEGDYQGICANM-G--NVLENVTLK-------KYPEIAKIKERMLK----FGAD-GALMSGSGPTVFGLFDDESRAQR 264 (286)
T ss_pred HHhcCCHHHHHHhc-c--CcHHHHHHh-------hChHHHHHHHHHHh----cCCC-eeEEcccCccEEEEeCCHHHHHH
Confidence 99999999999875 2 455443332 34566667666654 6888 66678999999999987554444
Q ss_pred HHHHHHhhCC
Q 014714 328 LLQRLLFFFP 337 (420)
Q Consensus 328 v~~~l~~~f~ 337 (420)
+.+.+++.++
T Consensus 265 i~~~l~~~~~ 274 (286)
T PRK00128 265 IYNGLKGFCK 274 (286)
T ss_pred HHHHhHhhcC
Confidence 8888877654
No 14
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.96 E-value=7.2e-27 Score=229.94 Aligned_cols=271 Identities=16% Similarity=0.135 Sum_probs=185.6
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC-CcchHHHHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEI 86 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~-~~~r~~~~l~~~ 86 (420)
+.+++.|.+|+.| .--|||+++|| ..+|+..+++ ||++++++..+ ..++..++...+. +.+.+.++++.+
T Consensus 4 ~~~~a~aKiNL~L-~i~~~r~dgyH--~l~si~~~i~---l~d~v~v~~~~---~~~i~~~~~~~p~~~~nl~~~a~~~~ 74 (287)
T PRK14616 4 ISVKAFAKINLGL-LITGKRPDGYH--TLETIFAPIN---WYDTLTFSPSD---TISMSCTNLDLPVDDSNLCIRAAKAL 74 (287)
T ss_pred eEEeeceeEEeee-ecCCCCCCCcc--ceeEEEEEcC---CCCEEEEEECC---CEEEEeCCCCCCCCccHHHHHHHHHH
Confidence 3467788888887 44699999999 5899999998 99999997642 3445444433333 244555677777
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~ 166 (420)
++.++. ..+++|+++|+||.++|||||||++||++.|+++++|.+++.+|+.++|.+.+++++.
T Consensus 75 ~~~~~~----------------~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~Dvp~ 138 (287)
T PRK14616 75 QEYAGV----------------SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGADVPY 138 (287)
T ss_pred HHHhCC----------------CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcce
Confidence 766643 3578999999999999999999999999999999999999999999999999999766
Q ss_pred cc-ccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHH
Q 014714 167 SL-FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM 245 (420)
Q Consensus 167 sl-~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l 245 (420)
++ +||++. ..|. |. ....+.. .+.+++ +++.|+ ..++|.+ +++.++.... .+ ..++..+
T Consensus 139 ~l~~gg~~~-~~g~---g~--~~~~~~~---~~~~~~-vvv~P~--~~vsT~~-a~~~l~~~~~-----~~--~~~~~~l 198 (287)
T PRK14616 139 FLEMKGLAY-ATGI---GD--ELEDLQL---TLPFHI-VTVFPE--EHISTVW-AYKNFYRRFE-----RE--RPDLKTL 198 (287)
T ss_pred EeccCCcEE-EEEc---Cc--eeEECCc---CCCcEE-EEECCC--CCcCHHH-HHHHhhhhcc-----cC--CchHHHH
Confidence 66 589874 3332 11 1223321 123444 344454 3565544 4443332110 01 2345566
Q ss_pred HHHHHc-CCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccch
Q 014714 246 EEAIQN-HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKI 324 (420)
Q Consensus 246 ~~Al~~-~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~ 324 (420)
+.++.. +|++.++. ++ |.++ |+++.+.|...++.+.+.+ .|++ ++.+||||||+|+++.+++.
T Consensus 199 ~~~l~~~~~~~l~~~-~~---nD~e-------~~~~~l~p~l~~v~~~~~~----~Gal-g~~lSGSGptv~al~~~~~~ 262 (287)
T PRK14616 199 VRRLCLDGDTSVLPA-FE---NDFE-------SAVFDHYPAVRKVKDDLLE----AGSF-FASLSGSGSAVFGLFENEAD 262 (287)
T ss_pred HHHHhcCCHHHHHHH-hc---CccH-------HHHHHhChHHHHHHHHHHh----CCCC-eEEEecccccceEEeCCHHH
Confidence 776665 56666654 22 3342 3344566777777776654 6888 66678999999999987554
Q ss_pred HHHHHHHHHhhCCCC
Q 014714 325 ATELLQRLLFFFPPN 339 (420)
Q Consensus 325 ~~~v~~~l~~~f~~~ 339 (420)
.+++.+.+++.|+..
T Consensus 263 a~~i~~~l~~~~~~~ 277 (287)
T PRK14616 263 AEAAAEMMRARYRTN 277 (287)
T ss_pred HHHHHHHhHHhCccc
Confidence 555999999988875
No 15
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=1.4e-26 Score=228.82 Aligned_cols=280 Identities=14% Similarity=0.101 Sum_probs=188.0
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r 87 (420)
+++.|.|++|+.| .--|||+++|| ..+|++++++ .++++.+++..++ .+.++..++...+..++.+.++++.++
T Consensus 7 ~~~~apaKINL~L-~v~~kr~DGyH--~l~sl~~~i~--~~~D~l~i~~~~~-~~i~~~~~~~~~~~~~Nlv~~a~~~~~ 80 (296)
T PRK14615 7 VTLRSGCKVNLDL-RITGVRPDGYH--EIDSLFLPLP--EPHDELHVRVTDA-PGITVTCTIPDLDPERNTVTRAYTAFA 80 (296)
T ss_pred EEEEecceEEecc-ccCCcCCCCCc--ceEEEEEECC--CCCcEEEEEECCC-CCEEEEECCCCCCCCccHHHHHHHHHH
Confidence 3467778888887 44699999999 5999999998 4699999986542 134455555433333566777888888
Q ss_pred HHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccc
Q 014714 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS 167 (420)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~s 167 (420)
+.++. ..+++|+++|+||.++|||||||.+||++.+++++++++++.++|.++|.+++++++++
T Consensus 81 ~~~~~----------------~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaDvPff 144 (296)
T PRK14615 81 AATGF----------------RPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVGADVPFF 144 (296)
T ss_pred HHhCC----------------CCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCeee
Confidence 77653 35799999999999999999999999999999999999999999999999988888888
Q ss_pred cccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhh-chHHHHHHH
Q 014714 168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEV-VPKRIVQME 246 (420)
Q Consensus 168 l~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~-~~~~~~~l~ 246 (420)
++||.+. ..|.+ . ....+.. ..|+++++ ++.|. ..++|.+.++. ++...... +.... ...+...++
T Consensus 145 l~gg~a~-~~G~G---e--~~~~l~~--~~~~~~~v-l~~P~--~~vsT~~a~~~-~~~~~~~~-~~~~~~~~~~~~~~l 211 (296)
T PRK14615 145 LHNVPCR-ATGIG---E--ILTPVAL--GLSGWTLV-LVCPE--VQVSTPWAYAA-WDAANAKQ-IAASSRKQNRLRGCL 211 (296)
T ss_pred ccCCCEE-EEeeE---e--EEEECCC--CCCCcEEE-EECCC--CCcChHHHHHH-hhhhcccc-cccccccccchHHHH
Confidence 8899864 44431 1 2334431 12455544 44454 45666555432 21110000 00000 001222344
Q ss_pred HHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHH
Q 014714 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIAT 326 (420)
Q Consensus 247 ~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~ 326 (420)
.+...+|.+.++.... -.|.|+ |+++.+.|...++++.+.+ .|+. ++.+||||||+|+++.+++.++
T Consensus 212 ~~~~~~~~~~~~~~~~-l~ndle-------~~~~~l~P~l~~~~~~~~~----~GAl-ga~mSGSGptvfaL~~~~~~a~ 278 (296)
T PRK14615 212 TTEGVADRNPLSRGLW-LHNSFE-------PVVFAAHPELRRLKETLLR----HGAA-AALMSGSGSSVFGLFRRRAQAE 278 (296)
T ss_pred Hhhhccchhhhhhhhh-ccccch-------hHhHHhChHHHHHHHHHHh----cCCC-EEEEeccCcceEEEeCCHHHHH
Confidence 4555567665544311 014444 4455567788888777764 6888 6667899999999998777665
Q ss_pred HHHHHHHhh
Q 014714 327 ELLQRLLFF 335 (420)
Q Consensus 327 ~v~~~l~~~ 335 (420)
++.+.|++.
T Consensus 279 ~i~~~l~~~ 287 (296)
T PRK14615 279 AAFEMLKGH 287 (296)
T ss_pred HHHHHHhhh
Confidence 588887764
No 16
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=3.4e-26 Score=227.67 Aligned_cols=281 Identities=18% Similarity=0.206 Sum_probs=182.1
Q ss_pred EEEEecceeEE-EeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEE--cCccccC-CcchHHHHHHH
Q 014714 10 VTAQTPTNIAV-IKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL--NGKEISL-GGGRYQNCLKE 85 (420)
Q Consensus 10 ~~~~Ap~nIa~-ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~l--nG~~~~~-~~~r~~~~l~~ 85 (420)
++.+||..|.+ +.--|+|.++|| ...++..+++ +|++++|+..++ +.+.+ +....+. +.+.+.++++.
T Consensus 4 ~~~~apakiNL~L~i~g~~~dGy~--~l~~~~~~i~---l~d~v~v~~~~~---~~~~~~~~~~~~~~~~~n~~~~~~~~ 75 (312)
T PRK02534 4 YTLIAPAKINLHLEILGDRPDGFH--ELAMVMQSID---LADRLELRNNGD---GTIRLHCDHPQLSTDDDNLIYRAAQL 75 (312)
T ss_pred EEEEeceEEEeccccCccCCCCCC--ceEEEEEECC---CCCEEEEEECCC---CcEEEEECCCCCCCCchhHHHHHHHH
Confidence 44555555544 133599998888 4667777887 899999987542 33333 2212332 24567778887
Q ss_pred HHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccc
Q 014714 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (420)
Q Consensus 86 ~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~ 165 (420)
+++.++. ...+++|+++++||.++|||||||.++|++.|++++++++++.++|.++|.+.+++++
T Consensus 76 ~~~~~~~---------------~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g~dv~ 140 (312)
T PRK02534 76 LRKRFPF---------------AEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELGSDVP 140 (312)
T ss_pred HHHHhCC---------------CCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCc
Confidence 7776643 1147999999999999999999999999999999999999999999999999888999
Q ss_pred cccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhh---hhhccchhHHHHHhhh--chH
Q 014714 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR---ESVETSLLLQHRAKEV--VPK 240 (420)
Q Consensus 166 ~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~---~~~~ts~~~~~~~~~~--~~~ 240 (420)
+|++||++++.. . |. ...++..+ ++++++++++|.. .++|.+.++ ..++.....++...+. ...
T Consensus 141 ~~~~GG~~~~~~-~---g~--~~~~~~~~---~~~~~vv~~~p~~--~~~T~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (312)
T PRK02534 141 FCIAGGTQLCFG-R---GE--ILEPLPDL---DGLGVVLAKYPSL--SVSTPWAYKTYRQQFGDTYLSDEEDFEQRRQAL 209 (312)
T ss_pred EEeECCeEEEEC-C---CC--EeEECCCC---CCcEEEEEECCCC--CccHHHHHHHHhhhcccccccCccccccccccc
Confidence 999999986542 1 11 23455432 3444443323543 455544432 2222211111111110 133
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEee
Q 014714 241 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIAR 320 (420)
Q Consensus 241 ~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~ 320 (420)
+...++.+|.++|++.+++.+. |.+.+.... ..|...++++.+. .+.|+. ++.+||||||+|+++.
T Consensus 210 ~~~~l~~al~~~d~~~~~~~~~---n~l~~~~~~-------~~~~i~~~~~~l~---~~~Ga~-~~~lSGsGptv~~l~~ 275 (312)
T PRK02534 210 RSGPLLQAISAKDPPPIAQLLH---NDLEKVVLP-------EYPQVAKLLELLS---SLPGCL-GTMMSGSGPTCFALFE 275 (312)
T ss_pred chhHHHHhhhccCHHHHHHhhh---CchHHHhHh-------cChHHHHHHHHHH---hccCCC-eeEEECcCcceEEEeC
Confidence 5567899999999999987542 333333321 1234444444443 136887 6668899999999998
Q ss_pred ccchHHHHHHHHHhhCCC
Q 014714 321 NRKIATELLQRLLFFFPP 338 (420)
Q Consensus 321 ~~~~~~~v~~~l~~~f~~ 338 (420)
+++.++++.+.+++.|+.
T Consensus 276 ~~~~a~~~~~~l~~~~~~ 293 (312)
T PRK02534 276 SQEQAEQALEQVREAFAD 293 (312)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 765444488888776654
No 17
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.95 E-value=9.8e-27 Score=225.85 Aligned_cols=269 Identities=16% Similarity=0.134 Sum_probs=194.4
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc---ccCCcchHHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---ISLGGGRYQNCLK 84 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~---~~~~~~r~~~~l~ 84 (420)
+.+.+.|.+|+.| +--|||+++|| ...|+..+++ ++++.+++..+ .+.+.+.|.. ++.+.+.+.++.+
T Consensus 4 ~~~~apAKiNL~L-~V~gkr~DGYH--el~sl~~~id---~~D~l~i~~~~---~~~~~~~~~~~~~lp~~~NLv~rAa~ 74 (289)
T COG1947 4 TKFPAPAKINLFL-HVTGKRADGYH--ELETLFQFID---LGDELTIRPRD---DDGFIVLGTFADGLPTDENLVYRAAE 74 (289)
T ss_pred eEeeccceEEEEE-EecccCCCCce--eeEEEEEEec---cCCEEEEEECC---CCCceEecCCCCCCCCcchHHHHHHH
Confidence 5567777778777 55799999999 4899999998 99999998864 3445444432 3333467888889
Q ss_pred HHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc
Q 014714 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (420)
Q Consensus 85 ~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa 164 (420)
.+++.++. ..++.|.++|+||+++|||++||++||++++||++|+++++.+||..+|.+.+.++
T Consensus 75 ll~~~~~~----------------~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDV 138 (289)
T COG1947 75 LLRKRTGI----------------AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLGADV 138 (289)
T ss_pred HHHHHhCC----------------CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCc
Confidence 99988874 46899999999999999999999999999999999999999999999998888898
Q ss_pred ccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHH
Q 014714 165 CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQ 244 (420)
Q Consensus 165 ~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~ 244 (420)
++|++||... ..|. .+++.+....|+.|++ ++.|. ..++|...++ ..... . .......
T Consensus 139 Pffl~g~tA~-a~G~--------GE~l~~~~~~~~~~~v-l~~P~--v~vsT~~vy~-~~~~~-------~--~~~~~~~ 196 (289)
T COG1947 139 PFFLSGGTAF-AEGR--------GEKLEPLEDPPEKWYV-LAKPG--VGVSTKEVYK-DPELT-------R--NTPKSEP 196 (289)
T ss_pred CeeeeCCceE-EEEc--------cceeeECCCCCCceEE-EEeCC--CCCChHHHHc-CcCcc-------c--ccCCchh
Confidence 8999999864 3332 2344433333555654 45553 4777777665 11110 1 1223344
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccch
Q 014714 245 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKI 324 (420)
Q Consensus 245 l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~ 324 (420)
+..++..+++....+.. .|.|+.+++..|| +..+...++ ...|+. .+.+||+|||||.++.+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~---~NdLe~~~~~~~p-------~v~~~~~~l----~~~ga~-~~~mSGSGstvF~l~~~~~~ 261 (289)
T COG1947 197 LIAALSLENLKQIAPFL---INDLEKVALRLYP-------EVKEALSEL----LEYGAL-PARMSGSGSTVFALFDTEKE 261 (289)
T ss_pred hhHHHhhhhHhhhcccc---ccchHHHHHHhCh-------HHHHHHHHH----hhcccc-cceEecCCCcEEEEeCChHH
Confidence 55556666766665533 2789999988876 333332333 234765 66788999999999999988
Q ss_pred HHHHHHHHHhhCCC
Q 014714 325 ATELLQRLLFFFPP 338 (420)
Q Consensus 325 ~~~v~~~l~~~f~~ 338 (420)
++++.+.+.+.++.
T Consensus 262 a~~~~~~l~~~~~~ 275 (289)
T COG1947 262 AQRVAEQLPKGVCG 275 (289)
T ss_pred HHHHHHHhhcccCC
Confidence 87788877766554
No 18
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=1.8e-26 Score=228.10 Aligned_cols=275 Identities=13% Similarity=0.126 Sum_probs=185.3
Q ss_pred EEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc----------c----cCCc
Q 014714 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE----------I----SLGG 76 (420)
Q Consensus 11 ~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~----------~----~~~~ 76 (420)
.+.|.+|+.| .--|||+++|| ..+|+..+++ |+++.+++..+. ...++..+... . +.++
T Consensus 2 ~apAKINL~L-~I~gkr~dGyH--~l~s~~~~i~---l~D~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (297)
T PRK14613 2 ISPAKINLGL-EIPFKREDGFH--EIRSVFLKIS---WGDDIEIEPAPN-GVFELFSTNEIILEKRKLYDQVSERGDIKQ 74 (297)
T ss_pred CCCceEeeee-cCCCcCCCCcc--eeeeEEEEec---cCCEEEEEECCC-CcEEEEecccccccccccccccCCCCCccc
Confidence 3567888887 45799999999 5899999998 999999976432 12233323221 1 1235
Q ss_pred chHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 014714 77 GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAI 156 (420)
Q Consensus 77 ~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~i 156 (420)
+.+.++++.+++.++. ..+++|+++|+||+++|||||||++|+++.++++++++. ..++|.++
T Consensus 75 Nlv~ka~~~~~~~~~~----------------~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l~-~~e~L~~l 137 (297)
T PRK14613 75 NILYKTFIKARSLFPE----------------LPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNFF-TSDEMQVF 137 (297)
T ss_pred chHHHHHHHHHHHhCC----------------CCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCCC-cHHHHHHH
Confidence 6677888888877653 357999999999999999999999999999998876652 34678879
Q ss_pred HHhccCccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhh
Q 014714 157 ARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKE 236 (420)
Q Consensus 157 Ar~gsGsa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~ 236 (420)
|.++++++ ++++||.+.|..|.+ . ...+++. +..++ ++++|. ..++|.+.+ +.+++...... ...
T Consensus 138 A~~lGaDv-P~~l~G~~a~~~g~G---e--~~~~l~~----~~~~~-vlv~P~--~~vsT~~a~-~~l~~~~~~~~-~~~ 202 (297)
T PRK14613 138 AKEIGSDV-PFFLGEGHAFVTGKG---E--IMEEIEV----HKGQG-ILALTP--QVMNTGEMY-ALLKKPLQESA-SQK 202 (297)
T ss_pred HHHhCCcc-chhhcCCeEEEecCC---c--EEEEcCC----CCCeE-EEEECC--CCcChHHHH-Hhcchhhcccc-ccc
Confidence 98888876 555555566665532 1 2445532 33334 455565 356665544 44432110000 001
Q ss_pred hchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceE
Q 014714 237 VVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAV 316 (420)
Q Consensus 237 ~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~ 316 (420)
+...+...++.++.++|++.+...++ |.|+ |+++-+.|...++++.+.+ .|+. ++.+||||||+|
T Consensus 203 ~~~~~~~~~~~al~~~~~~~l~~~l~---ndle-------~~~~~l~P~~~~i~~~~~~----~Ga~-~~~mSGSGptvf 267 (297)
T PRK14613 203 NGNTLSEDLISSLKVGDWVSLQGRLE---NDFE-------PVAFQLHPELGVLKDKFLE----FGSS-YCSLTGSGSSMY 267 (297)
T ss_pred cccccHHHHHHHHHcCCHHHHHHHhc---ccch-------HHHHHhCcHHHHHHHHHHH----cCCC-EEEEEccccceE
Confidence 11224557889999999998877554 3453 3445567788888777754 6887 777889999999
Q ss_pred EEeeccchHHHHHHHHHhhCCCC
Q 014714 317 LIARNRKIATELLQRLLFFFPPN 339 (420)
Q Consensus 317 ~i~~~~~~~~~v~~~l~~~f~~~ 339 (420)
+++.+++..+++.+.+++.|+..
T Consensus 268 ~l~~~~~~a~~~~~~l~~~~~~~ 290 (297)
T PRK14613 268 GLVQGLEIQEELLPRLRQEFSNL 290 (297)
T ss_pred EEeCCHHHHHHHHHHHHHhhccc
Confidence 99988665555888888877654
No 19
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=3.2e-26 Score=224.12 Aligned_cols=260 Identities=16% Similarity=0.160 Sum_probs=180.8
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC-CcchHHHHHHHHHH
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEIRS 88 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~-~~~r~~~~l~~~r~ 88 (420)
+.+.|.+|+.+ +--|||.++|| ..||++++|+ ||++.+++..++ ..++..++...+. +.+.+.++++.+++
T Consensus 5 ~~a~aKiNl~L-~i~~~~~dgyH--~l~sl~~al~---l~d~v~i~~~~~--~~~i~~~~~~~p~~~~Nli~ka~~~~~~ 76 (276)
T PRK14612 5 RLAPAKVNLGL-SVLGRREDGYH--ELHTLMVPLD---VGDRLEVEPIAS--GLELRVLGADLPTDERNLVYRAARAYLD 76 (276)
T ss_pred EeeCcEEeecc-ccCCCCCCCCc--eeEEEEEECC---CCCEEEEEECCC--cEEEEcCCCCCCCCCcccHHHHHHHHHH
Confidence 45666666666 44699999999 5999999998 999999986532 3445555543333 24567778888887
Q ss_pred HccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccccc
Q 014714 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 168 (420)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~sl 168 (420)
.++. ..+++|+++|+||+++|||||||.+||++.++|++++++++ +.++|.+.++++++++
T Consensus 77 ~~g~----------------~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g~dv~~~~ 137 (276)
T PRK14612 77 AAGQ----------------PGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLGADVPFFL 137 (276)
T ss_pred HhCC----------------CCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhCCCcCeee
Confidence 7653 34799999999999999999999999999999999998764 6777777777889999
Q ss_pred ccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhh-ccchhHHHHHhhhchHHHHHHHH
Q 014714 169 FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESV-ETSLLLQHRAKEVVPKRIVQMEE 247 (420)
Q Consensus 169 ~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~-~ts~~~~~~~~~~~~~~~~~l~~ 247 (420)
+||+++. .|. |. ...++++ +++++ ++++|.. .++ |..+++.+ +.. ... ..++..++.
T Consensus 138 ~GG~~~~-~g~---g~--~~~~l~~----~~~~~-vv~~P~~--~~s-T~~a~~~l~~~~------~~~--~~~~~~l~~ 195 (276)
T PRK14612 138 LGGAAEA-RGV---GE--RLTPLEL----PPVPL-VLVNPGV--AVS-ARDAYRWLEPED------FGP--ELDVEAILA 195 (276)
T ss_pred eCCeEEE-Eec---Cc--cceEcCC----CCcEE-EEECCCC--CCC-HHHHHHhhcccc------CCC--cccHHHHHH
Confidence 9999864 332 11 1344532 33444 4455543 455 44444444 211 111 235677888
Q ss_pred HHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHH
Q 014714 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATE 327 (420)
Q Consensus 248 Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~ 327 (420)
++.++|...+ .|.|+ |+++.+.|...++++.+.+ .|+. ++.+||||||+|+++++++.+++
T Consensus 196 ~l~~~d~~~~-------~n~l~-------~~~~~~~p~l~~i~~~l~~----~Ga~-~~~lSGsGptvfal~~~~~~a~~ 256 (276)
T PRK14612 196 ALARGEEPPY-------WNSLE-------GPVFARHPELQEVLAALRA----AGLR-GVLMSGSGSTCFGLAEDAAQAQR 256 (276)
T ss_pred HHHhcccccc-------cCCcH-------HHHHHhChHHHHHHHHHHh----CCCC-EEEEcCcchhhEEEeCCHHHHHH
Confidence 8888873221 12333 4555577888888888754 6887 66678999999999987665555
Q ss_pred HHHHHHhhCC
Q 014714 328 LLQRLLFFFP 337 (420)
Q Consensus 328 v~~~l~~~f~ 337 (420)
+.+.+++.++
T Consensus 257 ~~~~l~~~~~ 266 (276)
T PRK14612 257 AAAALRARHP 266 (276)
T ss_pred HHHHhHhhCC
Confidence 8888877664
No 20
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.95 E-value=1.9e-25 Score=220.49 Aligned_cols=273 Identities=15% Similarity=0.125 Sum_probs=184.7
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHHHHH
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSR 89 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r~~ 89 (420)
+.+.|.+|+.+ ..-|||+++|| ..+|+.++++ ++++.+++..++ ...++..+....+.+.+.+.++++.+++.
T Consensus 4 ~~apaKiNL~l-~i~~~r~dGyH--~l~sl~~~i~---l~d~v~i~~~~~-~~i~~~~~~~~~~~~~nlv~~a~~~l~~~ 76 (293)
T TIGR00154 4 FPSPAKLNLFL-YITGKRPDGYH--ELQTLMQFLD---LGDKIIISVRSD-DDIRLLKGDFDVPLEENLIYRAAQLLKNF 76 (293)
T ss_pred EeecccEEEEE-ecCCcCCCCCc--ceEEEEEEec---cCcEEEEEECCC-CcEEEeeCCCCCCCCCcHHHHHHHHHHHH
Confidence 45666666666 55689999999 4889999998 899999876542 12233323222222346778888888877
Q ss_pred ccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccccc
Q 014714 90 ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLF 169 (420)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~sl~ 169 (420)
++... ....+++|+++++||.++|||||||.+||++.|++++++++++.++|.++|.+.+++++.|++
T Consensus 77 ~~~~~------------~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~Dv~~~~~ 144 (293)
T TIGR00154 77 ANSKI------------KSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGADVPFFVS 144 (293)
T ss_pred hcccc------------cCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEEE
Confidence 65210 013479999999999999999999999999999999999999999999999999889999999
Q ss_pred cCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHHHHH
Q 014714 170 GGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 249 (420)
Q Consensus 170 GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~Al 249 (420)
||++.. .|. |. ...++.. .++++++ ++.|. ..++|.+..+ .++ +. .........++.++
T Consensus 145 gg~~~~-~g~---ge--~~~~l~~---~~~~~~v-l~~p~--~~~sT~~~~~-~l~---~~-----~~~~~~~~~l~~~~ 203 (293)
T TIGR00154 145 GHAAFA-TGV---GE--IITPFED---PPEKWVV-IAKPH--VSISTPVVYQ-AYK---LP-----RNTPKRAKEWLKKI 203 (293)
T ss_pred CCeEEE-Eec---Cc--EEEECCC---CCCcEEE-EEcCC--CCcChHHHHH-hhh---hc-----ccCcchhHHHHHHH
Confidence 999753 332 11 2334432 2455544 44453 3555544433 222 00 00123345577777
Q ss_pred HcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHHHH
Q 014714 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELL 329 (420)
Q Consensus 250 ~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~v~ 329 (420)
..++++.+...+. |.|..+.+. +.|...++++.+++ .|+. ++.+|||||++|+++.+++..+++.
T Consensus 204 ~~~~~~~~~~~~~---ndle~~~~~-------~~p~l~~i~~~l~~----~Ga~-~a~mSGSG~tvf~l~~~~~~a~~~~ 268 (293)
T TIGR00154 204 SLECLQLLDSNGL---NDLEKVALK-------RHTEVAQALNWLLE----YGLA-PERLSGSGACVFALFDMESEAEQVL 268 (293)
T ss_pred hhccHHHHhhhhc---CccHHHHHh-------cCHHHHHHHHHHHh----CCCC-eEEEeccccceEEEeCCHHHHHHHH
Confidence 7777776654332 455554433 44677777777654 6887 6678899999999998776555477
Q ss_pred HHHHhhCC
Q 014714 330 QRLLFFFP 337 (420)
Q Consensus 330 ~~l~~~f~ 337 (420)
+.+++.++
T Consensus 269 ~~~~~~~~ 276 (293)
T TIGR00154 269 EQAPEWLN 276 (293)
T ss_pred HHhHHHhh
Confidence 76665554
No 21
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=2.5e-25 Score=218.59 Aligned_cols=269 Identities=16% Similarity=0.162 Sum_probs=180.2
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc-ccCCcchHHHHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISLGGGRYQNCLKEI 86 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~-~~~~~~r~~~~l~~~ 86 (420)
+.+.|.|.+|+.| .--|||+++|| ..+|+.++++ ||++.+++..++ ...+.+.+.. .+.+++.+.++++.+
T Consensus 4 ~~~~apAKINL~L-~v~g~r~dGyH--~l~s~~~~i~---l~D~l~i~~~~~--~~~~~~~~~~~~~~~~Nlv~kA~~~l 75 (283)
T PRK14610 4 FLVKAPAKINLFL-HIVGKSESGYH--LLESLFVFVN---LYDFLEIKIGSK--NRGVEFVNSLKINRYNNTVQRAIGLL 75 (283)
T ss_pred eEEeecceEEeee-ccCCcCCCCcc--hhheeeEEcC---CCCEEEEEECCC--CCeEEEeCCCCCCCCCcHHHHHHHHH
Confidence 4567777788877 55799999999 5899999998 999999986532 1246665542 222356677888888
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~ 166 (420)
++..+. ..+++|+++|+||+++|||||||++||++.++|++|+ ++.+||.++|.+...++++
T Consensus 76 ~~~~~~----------------~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lGaDvPf 137 (283)
T PRK14610 76 LRHSPV----------------RTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVGSDVPA 137 (283)
T ss_pred HHHhCC----------------CCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCcE
Confidence 877653 3489999999999999999999999999999999996 6899999999998888889
Q ss_pred ccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHH
Q 014714 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (420)
Q Consensus 167 sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~ 246 (420)
|++||.+ |..|.+ . ..+++++ .+...+ ++++.|.. ..++|.+.++.. ... .... . ...
T Consensus 138 fl~g~~a-~~~G~G---e--~l~~l~~--~~~~~~-~vl~~p~~-~~~sT~~vy~~~-~~~-----~~~~--~--~~~-- 195 (283)
T PRK14610 138 CLDSKTL-FVRGIG---E--DILLLPD--LSLPTY-VVLVAPKG-KFLSTRKVFNKY-ECK-----AFSE--P--IDN-- 195 (283)
T ss_pred EEECCeE-EEEecc---c--EEEECcc--cCCCCe-EEEEECCC-CccChHHHHHhh-ccc-----ccCC--c--ccc--
Confidence 9999997 555542 1 2333321 112223 44555542 467887776543 100 0000 0 000
Q ss_pred HHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHH
Q 014714 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIAT 326 (420)
Q Consensus 247 ~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~ 326 (420)
..+..+++..+...+ .|.|+. +.+.+.|...++++.+++ ..|+. ++++||||||+|+++.+++.++
T Consensus 196 ~~~~~~~~~~~~~~~---~Ndle~-------~~~~l~P~l~~~~~~l~~---~~ga~-~a~mSGSGsTvf~l~~~~~~a~ 261 (283)
T PRK14610 196 LPVAQDDLLELLKEA---RNDLLE-------TAISLVPEIEEILFVLES---LEGCI-LSRMSGSGATCFALFEEEEAAE 261 (283)
T ss_pred cccchhHHHHHHHHh---cCchHH-------HHHHhChHHHHHHHHHHh---cCCCc-eEEEeCcccceeEEeCCHHHHH
Confidence 012223332222211 355554 344556788888876653 24776 6778899999999998766554
Q ss_pred HHHHHHHhhCCC
Q 014714 327 ELLQRLLFFFPP 338 (420)
Q Consensus 327 ~v~~~l~~~f~~ 338 (420)
++.+.+++.++.
T Consensus 262 ~~~~~l~~~~~~ 273 (283)
T PRK14610 262 AAARYLKMTRPE 273 (283)
T ss_pred HHHHHhhhhCCc
Confidence 487777765543
No 22
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=2.3e-25 Score=218.08 Aligned_cols=255 Identities=11% Similarity=0.063 Sum_probs=174.3
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc-ccCCcchHHHHHHHHHH
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISLGGGRYQNCLKEIRS 88 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~-~~~~~~r~~~~l~~~r~ 88 (420)
+.+.|.+|+.| .--|||+++|| ..+|+..+++ |+++.+++..+ ...+.+.+.. .+.+.+.+.++++.+++
T Consensus 3 ~~apAKINL~L-~V~gkR~DGYH--~l~sl~~~i~---l~D~l~i~~~~---~~~i~i~~~~~~~~~~Nlv~ra~~~l~~ 73 (288)
T PRK00650 3 FFSPAKLNLFL-QLLGKREDGFH--EIVTRYQAIA---FGDQLSLSISS---RDSLQVINACHLETPSNSIWKSVALFRR 73 (288)
T ss_pred ccccceEEeee-ccCCcCCCCCc--ceeEEEEEcC---CCCEEEEEECC---CCcEEEeCCCCCCccccHHHHHHHHHHH
Confidence 56778888888 55799999999 5899999998 99999998653 2334443222 22246678888888888
Q ss_pred HccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccccc
Q 014714 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 168 (420)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~sl 168 (420)
..+. ..+++|+++|+||+++|||||||++||++.++|++++++++.+||.++|.+.++++++++
T Consensus 74 ~~g~----------------~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGaDvPffl 137 (288)
T PRK00650 74 YTGI----------------TTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGMDTPFFF 137 (288)
T ss_pred HhCC----------------CCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCcchhhh
Confidence 7764 347999999999999999999999999999999999999999999999999999988888
Q ss_pred ccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHHHH
Q 014714 169 FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEA 248 (420)
Q Consensus 169 ~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~A 248 (420)
.||++. ..|. |. ....++ ..++++++ +++|+ ..++|.+.++. .. .. . ...
T Consensus 138 ~~g~a~-~~G~---Ge--~l~~~~---~~~~~~~v-lv~P~--~~vsT~~ay~~-~~------~~-~---~~~------- 187 (288)
T PRK00650 138 STGSAL-GVGR---GE--KIIALE---ESVSDRYV-LYFSS--EGVLTSRAFAY-VQ------PS-D---CSS------- 187 (288)
T ss_pred cCceEE-EEec---CC--EEEECc---CCCCceEE-EEeCC--CCCChHHHHHh-hc------cc-c---cch-------
Confidence 889864 3332 11 233442 12455654 45564 36766555432 11 00 0 000
Q ss_pred HHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHHH
Q 014714 249 IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATEL 328 (420)
Q Consensus 249 l~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~v 328 (420)
...+ ....|.|+.+++..+ |...++++.+.+.-...|+ .+.+||+|||+|+++.+++..+.+
T Consensus 188 -----~~~~----~~~~Ndle~~~~~~~-------p~i~~~~~~l~~~~~~~~~--~~~MSGSGst~F~l~~~~~~~~~~ 249 (288)
T PRK00650 188 -----RKNL----EYTQNDLEKPVFRLR-------LDLKEKKHWLESLWAELPV--HVGLTGSGATLFVRYPEILEKDPS 249 (288)
T ss_pred -----hhHh----ccCCCchHHHHHHhC-------hHHHHHHHHHHhccccCCC--eEEEeCcccCEEEEeCCHHHHHHH
Confidence 0000 112467877776554 4666777766542000122 355789999999999886655446
Q ss_pred H-HHHHhhCC
Q 014714 329 L-QRLLFFFP 337 (420)
Q Consensus 329 ~-~~l~~~f~ 337 (420)
. ..++..++
T Consensus 250 ~~~~~~~~~~ 259 (288)
T PRK00650 250 YAAQIQRAIT 259 (288)
T ss_pred HHHHhHhhhh
Confidence 6 66666655
No 23
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.94 E-value=1.6e-24 Score=211.66 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=172.9
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc--ccCCcchHHHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISLGGGRYQNCLKE 85 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~--~~~~~~r~~~~l~~ 85 (420)
..+++.|.+|+.+ .--|||+++|| ..+|+.++++ ++++.+++..+ .+.+.+.+.. .+.+.+.+.++++.
T Consensus 7 ~~~~apaKiNL~L-~v~~~r~dGyH--~l~s~~~~i~---l~D~v~i~~~~---~~~~~i~~~~~~~~~~~N~v~~a~~~ 77 (271)
T PRK00343 7 LDWPAPAKLNLFL-HITGRRADGYH--ELQTLFQFLD---WGDTLHFEVRD---DGEIRLLTPIPGVPEEDNLIVRAARL 77 (271)
T ss_pred EEEeeeeeEEEEe-ecCCcCCCCCC--eeeEEEEEcc---cceEEEEEECC---CCcEEEeCCCCCCCCcccHHHHHHHH
Confidence 3467888888888 55699999999 5899999998 99999997654 2345554432 12235677788888
Q ss_pred HHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccc
Q 014714 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (420)
Q Consensus 86 ~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~ 165 (420)
+++..+. ..+++|+++++||.++|||||||++||++.|++++++++++.+||.++|.+++++++
T Consensus 78 l~~~~~~----------------~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~igaDvp 141 (271)
T PRK00343 78 LQKATGT----------------PLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLGADVP 141 (271)
T ss_pred HHHHhCC----------------CCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCce
Confidence 8877653 347999999999999999999999999999999999999999999999999888875
Q ss_pred cccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHH
Q 014714 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM 245 (420)
Q Consensus 166 ~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l 245 (420)
.++.||. .+..|. |. ...+++. |..+++ ++.|. ..++|.+.+++.... ..........+
T Consensus 142 ~~l~g~~-~~~~g~---g~--~~~~l~~----~~~~~v-l~~p~--~~~sT~~~~~~~~~~--------~~~~~~~~~~~ 200 (271)
T PRK00343 142 VFVRGHA-AFAEGI---GE--ILTPVDL----PEKWYL-VVKPG--VHISTAEIFSDPDLT--------RDTPKISIADF 200 (271)
T ss_pred EEecCCc-EEEEec---CC--EEEECCC----CCcEEE-EEeCC--CCcChHHHHhhhhhc--------cCCChhhHHHH
Confidence 5555554 454443 11 2445542 344444 45554 356665544321100 00001111111
Q ss_pred HHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchH
Q 014714 246 EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIA 325 (420)
Q Consensus 246 ~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~ 325 (420)
..... .|.|..+.+.. .|...++++.+.+ .|+ +.+||||||+|+++.+++..
T Consensus 201 ~~~~~--------------~Ndle~~~~~~-------~P~~~~~~~~l~~----~ga---~~mSGSG~tvF~l~~~~~~a 252 (271)
T PRK00343 201 LAGPF--------------RNDCEPVVRKR-------YPEVAQALSWLLE----YAP---SRMTGTGACVFAEFDTEAEA 252 (271)
T ss_pred Hhccc--------------cCCHHHHHHHh-------ChHHHHHHHHHHh----CCC---eEEeccccceEEEcCCHHHH
Confidence 11111 24555555433 4566666666543 575 56789999999999987766
Q ss_pred HHHHHHHHhhCC
Q 014714 326 TELLQRLLFFFP 337 (420)
Q Consensus 326 ~~v~~~l~~~f~ 337 (420)
+++.+.+++.|+
T Consensus 253 ~~~~~~l~~~~~ 264 (271)
T PRK00343 253 EQVLAQLPEWLQ 264 (271)
T ss_pred HHHHHHhhhhcc
Confidence 658888887774
No 24
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.94 E-value=1.1e-24 Score=217.75 Aligned_cols=272 Identities=14% Similarity=0.203 Sum_probs=173.6
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCc---cccC--CcchHHHHHH
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK---EISL--GGGRYQNCLK 84 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~---~~~~--~~~r~~~~l~ 84 (420)
|++-+=.++++|..-|... =.+.++|++|+ .++++++|+.++ +.++.++.. ..+. ..+++.++++
T Consensus 3 v~~~~rlH~g~~d~~~~~g-----r~~Gg~G~al~--~~~~~v~v~~~~---~~~v~~~~~~g~~l~~~~~~n~~~~~~~ 72 (324)
T TIGR00144 3 INTPSRIHLTLIDLNGSIG-----RVDGGVGLALE--EPEIVIGLKESD---DMGVEFTSHAEGKLGEEYRRSRIMEAAR 72 (324)
T ss_pred ecccccccccccCCCCccC-----ccccceEEEEe--CCcEEEEEEECC---CceEEecccccccccchhHHHHHHHHHH
Confidence 4444445566663322211 13789999999 689999998764 344554432 1121 2334555555
Q ss_pred HHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC--
Q 014714 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG-- 162 (420)
Q Consensus 85 ~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsG-- 162 (420)
.+.+.++. .+++|+++|+||.++|||||||.++|++.|+|++++++++.+||.++|.+|++
T Consensus 73 ~~~~~~g~-----------------~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~s~ 135 (324)
T TIGR00144 73 KTLKHIGS-----------------EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGTSG 135 (324)
T ss_pred HHHHHhCC-----------------CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCCCc
Confidence 55554431 37899999999999999999999999999999999999999999999999988
Q ss_pred -ccccccccCeEEEeccc--C--C---------CCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhh--hcc
Q 014714 163 -SACRSLFGGFVKWILGK--E--G---------NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES--VET 226 (420)
Q Consensus 163 -sa~~sl~GG~V~~~~g~--~--~---------~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~--~~t 226 (420)
++++|++|||++ ..|+ . . ........+++ .|+++++ +++|+.. .+++ +|.. +++
T Consensus 136 ~~va~~~~GG~vv-~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~----~p~~~~v-lviP~~~-~t~~---are~~~lp~ 205 (324)
T TIGR00144 136 IGVASFEDGGFIV-DGGHSSKEKSDFLPSSASSAKPAPVIARYD----FPDWNII-LAIPEID-SVSG---RREVNIFQK 205 (324)
T ss_pred cceeeeeeCCEEE-ECCcccccccccCcccccCCCCCCeEEecC----CCCcEEE-EEecCCC-CCCc---HHHHHHHHh
Confidence 458899999986 4332 0 0 00112244443 3555555 5556543 3333 3332 444
Q ss_pred c--hhHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhh-----hhhhhccccCCCccccCchHHHHHHHHHHHHHh
Q 014714 227 S--LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSN-----QFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299 (420)
Q Consensus 227 s--~~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn-----~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~ 299 (420)
. ..+++ +.++....+..|+.+|.++|++.|++.+ +|-. .+|+.++ .+...++++.+.
T Consensus 206 ~~~i~~~d-v~~~~~~~l~~l~~al~~~d~~~~~~~l-~d~~~~~f~~~~~~~r---------~~li~~~~~~l~----- 269 (324)
T TIGR00144 206 YCPVPLRD-VERICHLILMKMMPAVVEGDLDAFGESV-NEIQGLGFKKIERELQ---------DPLIKRIIDSMI----- 269 (324)
T ss_pred cCCCCHHH-HHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhcchhhhcccc---------CHHHHHHHHHHH-----
Confidence 2 12333 4553333446679999999999999987 3322 3444332 233344444443
Q ss_pred cCCCcEEEeeCCCCceEEEeeccchHHHHHHHHHhhCCC
Q 014714 300 VGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPP 338 (420)
Q Consensus 300 ~Ga~~~a~tsgAGPtv~~i~~~~~~~~~v~~~l~~~f~~ 338 (420)
+++ ++.+||||||+|+++.++ ..+ +.+++.+.|..
T Consensus 270 -~a~-g~~iSGsGPTv~al~~~~-~~~-~~~~~~~~~~~ 304 (324)
T TIGR00144 270 -SAP-GAGMSSFGPTVYAVTDEK-PGN-IAGAVADIFGP 304 (324)
T ss_pred -hcc-CceecCCCCeEEEEecCc-hHH-HHHHHHHHhhh
Confidence 234 456779999999999865 344 77888877643
No 25
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=5.4e-24 Score=208.83 Aligned_cols=262 Identities=16% Similarity=0.140 Sum_probs=171.2
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC-CcchHHHHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKEI 86 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~-~~~r~~~~l~~~ 86 (420)
+.+.+.|.+|+.+ +-.|||+++|| ...|+..+|+ ||++.+|+..+. ...++..++...+. +++.+.++++.+
T Consensus 4 ~~~~apaKiNl~L-~i~~~r~dgyH--~l~s~~~~i~---l~d~v~v~~~~~-~~~~i~~~~~~~p~~~~nl~~~a~~~~ 76 (280)
T PRK14614 4 LTLKAPAKVNYRL-DVLRRRPDGYH--DLRMIMQRVD---LCDEIEIALSDG-PGIRVTCGREGVPDGPGNIAWRAADAL 76 (280)
T ss_pred eEEeecceEEeee-ccCCCCCCCcC--hhheEeEECC---CCeEEEEEECCC-CCEEEEeCCCCCCCCCCcHHHHHHHHH
Confidence 3456667777776 56899999999 5899999998 999999987642 12334333332333 355666777777
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~ 166 (420)
++.++. ..+++|+++++||.++|||||||.++|++.|++++++.+++.+++.++|...++++++
T Consensus 77 ~~~~~~----------------~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~Dv~~ 140 (280)
T PRK14614 77 LDLSGR----------------EVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGADVPF 140 (280)
T ss_pred HHHhCC----------------CCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcce
Confidence 777653 2478999999999999999999999999999999999999999999999888888889
Q ss_pred ccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHH-
Q 014714 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM- 245 (420)
Q Consensus 167 sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l- 245 (420)
+++||++.. .|. |. ...++.. .++++++ ++.|. ..++|.+.++....+.. .. ....+..+..+
T Consensus 141 ~l~gg~~~~-~g~---ge--~~~~l~~---~~~~~iv-l~~p~--~~~sT~~~~~~~~~~~~--~~--~~~~~~~~~~~~ 204 (280)
T PRK14614 141 FIFKKTALA-EGI---GD--KLTAVEG---VPPLWVV-LVNPG--LHVSTAWVYQNLRLTSR--KD--LAIIPRFFGSVA 204 (280)
T ss_pred eeeCCcEEE-EEc---Cc--eeEECCC---CCCcEEE-EECCC--CCCCHHHHHhccccccc--Cc--chhhhhhhhhHH
Confidence 999999753 222 11 1344432 2556654 34443 45666554443211000 00 00001111110
Q ss_pred -HHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccch
Q 014714 246 -EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKI 324 (420)
Q Consensus 246 -~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~ 324 (420)
+.++..+|++.+ .++. .|...++++.+.+ .|+. ++.+|||||++|++++++..
T Consensus 205 ~~~~~~~ndle~~--------------~~~~-------~p~l~~i~~~~~~----~Gal-ga~lSGSG~tv~~l~~~~~~ 258 (280)
T PRK14614 205 EVCALLSNDLESV--------------TIGR-------FPVIGEIKEELLA----AGAR-GSLMSGSGSTVFGLFDDEAA 258 (280)
T ss_pred HHhhhcccCcHHH--------------HHhc-------ChHHHHHHHHHHh----CCCC-EEEEeccccceEEEeCCHHH
Confidence 123334444433 2222 3556666666654 6888 56677999999999987764
Q ss_pred HHHHHHHHHh
Q 014714 325 ATELLQRLLF 334 (420)
Q Consensus 325 ~~~v~~~l~~ 334 (420)
.+++.+.+++
T Consensus 259 ~~~~~~~l~~ 268 (280)
T PRK14614 259 ARAAAEELSR 268 (280)
T ss_pred HHHHHHHhhh
Confidence 4447777666
No 26
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.92 E-value=6.4e-24 Score=207.17 Aligned_cols=251 Identities=14% Similarity=0.132 Sum_probs=167.6
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC--CcchHHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL--GGGRYQNCLKEI 86 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~--~~~r~~~~l~~~ 86 (420)
..++.|.+|+.| .--|||+++|| ..+|+..+++ |+++.+++..++ ...++.++|...+. +++.+.++++.+
T Consensus 2 ~~~apaKiNL~L-~v~~~r~dGyH--~l~s~~~~i~---l~D~l~i~~~~~-~~~~~~~~~~~~~~~~~~Nlv~~a~~~~ 74 (269)
T PRK14609 2 ITFPNAKINLGL-NVVEKRPDGYH--NLETVFYPIP---LTDALEITVRSA-TKTSLTVSGIPIPGDPEDNLVVKAYNLL 74 (269)
T ss_pred CcCccccEEeee-ccCCcCCCCcc--eeeEEEEECC---CCcEEEEEEcCC-CcEEEEeCCCCCCCCccccHHHHHHHHH
Confidence 467889999998 55699999999 4899999998 999999976543 24667778875543 256677788877
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~ 166 (420)
++..+. .+++|+++|+||+++|||||||++||++.|++++++++++.++|.++|.+.+.+++.
T Consensus 75 ~~~~~~-----------------~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iGaDvpf 137 (269)
T PRK14609 75 KKDFPL-----------------PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLGADCAF 137 (269)
T ss_pred HHHcCC-----------------CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCceE
Confidence 776542 368999999999999999999999999999999999999999999999888778777
Q ss_pred ccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHH
Q 014714 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (420)
Q Consensus 167 sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~ 246 (420)
+++||.+.. .|. |. ...++.. ..++++++ ++.|. ..++|.+.++. ++... .. .....+
T Consensus 138 fl~g~~a~~-~G~---Ge--~l~~l~~--~~~~~~~v-lv~P~--~~~sT~~a~~~-l~~~~------~~---~~~~~~- 195 (269)
T PRK14609 138 FIRNKPVYA-TGI---GD--IFSPIDL--SLSGYYIA-LVKPD--IHVSTAEAYAG-IKPHK------PE---TSLKEI- 195 (269)
T ss_pred EccCCCEEE-EEe---CC--eeEECCC--CCCCCEEE-EECCC--CCCChHHHHHh-hhhcC------cc---hhhHHH-
Confidence 888988643 332 11 2334421 11444544 44454 45666554432 22110 00 000011
Q ss_pred HHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccc
Q 014714 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 323 (420)
Q Consensus 247 ~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~ 323 (420)
...+...+...+ .|.+..... .+.|...++++.+.+ .|+. ++.+||||||+|+++.+++
T Consensus 196 ---~~~~~~~~~~~l---~Ndle~~~~-------~~~p~l~~i~~~l~~----~ga~-~~~mSGSG~tvf~l~~~~~ 254 (269)
T PRK14609 196 ---IRQPVEEWKNKL---VNDFEDSVF-------PKYPEIAEIKEKLYR----SGAL-YAAMSGSGSSVFGIFKKPP 254 (269)
T ss_pred ---HhhHHHHHHhhc---CCChHHHHH-------HcChHHHHHHHHHHh----CCCC-eEEEeCccceeEEEECChH
Confidence 111111111111 234444333 334566667666543 6887 6668899999999997654
No 27
>PTZ00298 mevalonate kinase; Provisional
Probab=99.92 E-value=3.3e-23 Score=207.64 Aligned_cols=286 Identities=12% Similarity=0.098 Sum_probs=185.7
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC----CcchHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL----GGGRYQNCL 83 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~----~~~r~~~~l 83 (420)
.+.+++||.-|.|+ |.+-..|.+| +|.++++ ++++++++..+......+..+....+. ..+.+.+++
T Consensus 9 ~~~~~~~~~kvil~---GEHaVvyg~~---aI~~~I~---~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~a~ 79 (328)
T PTZ00298 9 TTGKHIGYGKVILF---GEHFVVYGAE---AIVAGID---EYTECRLELTKGVPGLQVVDQRPAVPGYIVEKREEQRKAH 79 (328)
T ss_pred cccCCCcCeeEEEE---ecceeecCCc---hhhhecc---cceEEEEEEccCCCCceeccccccccchHHHhHHHHHHHH
Confidence 35789999999984 8999999876 8999998 788888876542111122222211111 134456677
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--
Q 014714 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS-- 161 (420)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gs-- 161 (420)
+.+++..+... ...+++|+++++||.++|||||||.++|++.|++++|+++++.+||.++|.+++
T Consensus 80 ~~~~~~~~~~~-------------~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~ 146 (328)
T PTZ00298 80 QLVLRHLNIDT-------------SVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGG 146 (328)
T ss_pred HHHHHHHhccc-------------CCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 77777665310 124899999999999999999999999999999999999999999999986532
Q ss_pred ----C---ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhh---ccch-hH
Q 014714 162 ----G---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESV---ETSL-LL 230 (420)
Q Consensus 162 ----G---sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~---~ts~-~~ 230 (420)
. +...|++||++....+. |. ....+++.. ++++++ ++.|. ...+|.+..+... ...+ .+
T Consensus 147 ~~g~~sG~D~~~~~~Gg~~~~~~~~---g~-~~~~~l~~~---~~~~lv-v~~~~--~~~sT~~~~~~v~~~~~~~p~~~ 216 (328)
T PTZ00298 147 YHGTPSGADNTAATYGGLISYRRVN---GK-SVFKRIAFQ---QPLYLV-VCSTG--ITASTTKVVGDVRKLKENQPTWF 216 (328)
T ss_pred hcCCCChHHHHHHHcCCeEEEecCC---Cc-cceeEecCC---CCCeEE-EEECC--CchhHHHHHHHHHHHHhcCHHHH
Confidence 2 44568999998654322 21 123344321 344444 34343 2445544433211 1111 11
Q ss_pred HHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeC
Q 014714 231 QHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFD 310 (420)
Q Consensus 231 ~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsg 310 (420)
+..... ....+.+++.+|.++|++.|++++..+++.+... ...+|...++++.+++ .|++ ++.+||
T Consensus 217 ~~~~~~-~~~~~~~~~~al~~~d~~~lg~~m~~~~~~l~~~--------~v~~p~l~~l~~~~~~----~Ga~-gaklSG 282 (328)
T PTZ00298 217 NRLLEN-YNACVSEAKEALQKGNLFRVGELMNANHDLCQKL--------TVSCRELDSIVQTCRT----YGAL-GAKMSG 282 (328)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHh----CCCc-eeEecc
Confidence 111111 2346678899999999999999875443333221 1256777777776654 6887 555779
Q ss_pred CCC--ceEEEeeccchHHHHHHHHHhhCCCC
Q 014714 311 AGP--NAVLIARNRKIATELLQRLLFFFPPN 339 (420)
Q Consensus 311 AGP--tv~~i~~~~~~~~~v~~~l~~~f~~~ 339 (420)
||| ++++++++++..+++.+.+++.|+..
T Consensus 283 sG~GG~v~al~~~~~~a~~~~~~l~~~~~~~ 313 (328)
T PTZ00298 283 TGRGGLVVALAASEDQRDAIAKAVRARCPEA 313 (328)
T ss_pred CCCCeEEEEEecchhhHHHHHHHHHHHhhhc
Confidence 999 58888876554444888888887654
No 28
>PRK03926 mevalonate kinase; Provisional
Probab=99.91 E-value=3.6e-22 Score=197.53 Aligned_cols=265 Identities=18% Similarity=0.177 Sum_probs=173.1
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHHHHH
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSR 89 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r~~ 89 (420)
++++||..|-++ |.+...+ +.++|+++++ +|++++++.+++ ..++..+....+..+..++.+++.+++.
T Consensus 2 ~~~~aPgkv~L~---Geh~~~~---g~~~l~~aI~---~~~~v~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 70 (302)
T PRK03926 2 VLCSAPGKIYLF---GEHAVVY---GKPAIACAID---LRTYVRAEFNDD--SIYIESDYGKTGEKHPYVSAAIEKMREE 70 (302)
T ss_pred eEEeeeeEEEEE---ecceeec---CCeEEEEEec---ceEEEEEEECCC--ceEEecccccccchhHHHHHHHHHHHHh
Confidence 678899999987 5555554 4679999998 899988876531 2222222211121233466677776666
Q ss_pred ccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------c
Q 014714 90 ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------S 161 (420)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~g--------s 161 (420)
.+. .+++|+++++||.++|||||||.++|++.|++++++++++.++|.++|.+. +
T Consensus 71 ~~~-----------------~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~s 133 (302)
T PRK03926 71 ADK-----------------DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAAS 133 (302)
T ss_pred cCC-----------------CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCc
Confidence 432 378999999999999999999999999999999999999999999999655 2
Q ss_pred C-ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhcc----c-hhHHHHHh
Q 014714 162 G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET----S-LLLQHRAK 235 (420)
Q Consensus 162 G-sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~t----s-~~~~~~~~ 235 (420)
| +.+.|+|||++.+.... +++. ++++++ ++.|. +..+|.+ +.+.++. . ..++...+
T Consensus 134 g~D~~~~~~Gg~~~~~~~~----------~l~~----~~~~~v-l~~~~--~~~sT~~-~~~~~~~~~~~~~~~~~~~~~ 195 (302)
T PRK03926 134 PTDTYVSTMGGFVTIPDRK----------KLPF----PECGIV-VGYTG--SSGSTKE-LVANVRKLKEEYPELIEPILS 195 (302)
T ss_pred hHHHHHHhcCCeEEEcCCC----------cCCC----CCceEE-EEECC--CCCcHHH-HHHHHHHHHHhCHHHHHHHHH
Confidence 2 45789999998654221 2321 344443 34443 3444444 3222221 0 11111122
Q ss_pred hhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCC--
Q 014714 236 EVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP-- 313 (420)
Q Consensus 236 ~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGP-- 313 (420)
. +......+..++.++|++.|++++..+ |. +++. ....+|...++++.+.+ .|+. ++.+|||||
T Consensus 196 ~-~~~~~~~~~~al~~~d~~~l~~~~~~~----~~-~~~~---~~~~~p~l~~l~~~~~~----~ga~-ga~lSGaG~Gg 261 (302)
T PRK03926 196 S-IGKISEKGEELILSGDYVSLGELMNIN----QG-LLDA---LGVSTKELSELIYAART----AGAL-GAKITGAGGGG 261 (302)
T ss_pred H-HHHHHHHHHHHHhcCCHHHHHHHHHHH----HH-HHHh---cCCCCHHHHHHHHHHHh----CCCc-eeeeccCCCCC
Confidence 1 233445667889999999999987432 22 1221 22356777777776654 5887 556779999
Q ss_pred ceEEEeeccchHHHHHHHHHhh
Q 014714 314 NAVLIARNRKIATELLQRLLFF 335 (420)
Q Consensus 314 tv~~i~~~~~~~~~v~~~l~~~ 335 (420)
++++++++++..+ +.+.+.+.
T Consensus 262 ~v~~l~~~~~~~~-~~~~~~~~ 282 (302)
T PRK03926 262 CMVALAAPEKQSE-VATAIKIA 282 (302)
T ss_pred EEEEEeccccHHH-HHHHHHhc
Confidence 8999988776665 87777654
No 29
>PRK05905 hypothetical protein; Provisional
Probab=99.91 E-value=5.9e-23 Score=198.43 Aligned_cols=247 Identities=13% Similarity=0.101 Sum_probs=163.9
Q ss_pred EEEEEecceeEEEeeecccc-CCCCCCCCCeeEeee-CCCCceeEEEEEEcCCCCcceEEEcCcc--ccCCcchHH-HHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRD-ETLILPVNDSISVTL-DPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISLGGGRYQ-NCL 83 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd-~~~~lP~~dSisvtL-~~~~L~~~t~v~~~~~~~~d~i~lnG~~--~~~~~~r~~-~~l 83 (420)
++++.|.+|+.| .--|||+ ++|| .-+|+.+++ + |+++.+++..++ ....+.+.+.. .....+.+. +++
T Consensus 2 ~~~apAKINL~L-~I~gkR~DdGYH--el~sv~~~i~~---l~D~l~i~~~~~-~~~~i~~~~~~~~~~~~~nli~~ka~ 74 (258)
T PRK05905 2 KYKSYAKINLGL-SIYKKCKKVTKH--KLESIFILVEN---VYDDIEIEKIEK-NIDDIHYFDETNEILVYSRLILVKTL 74 (258)
T ss_pred cccccceEEeee-eecccCCCCCCc--ceeEEEEEccc---cccEEEEEECCC-CCceEEEeCCCcCCCCCcchHHHHHH
Confidence 467889999998 4579999 5999 589999999 7 999999986542 11245553321 112245566 777
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 014714 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (420)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGs 163 (420)
+.+++.++. ..+++|+++|+||+++|||||||++||++.+||++|+ ++.++|.++|.+.+.+
T Consensus 75 ~~l~~~~~~----------------~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lGAD 136 (258)
T PRK05905 75 EWLRDKYNI----------------KNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLGSD 136 (258)
T ss_pred HHHHHHhCC----------------CCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCC
Confidence 888777653 3479999999999999999999999999999999998 5899999999999889
Q ss_pred ccccccc-CeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHH
Q 014714 164 ACRSLFG-GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRI 242 (420)
Q Consensus 164 a~~sl~G-G~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~ 242 (420)
+++|++| |.+ |..|.+ . ..+++.+ .+..+ +++|.|. ..+||.+.+++.-...+ .. ....
T Consensus 137 VPFfl~g~~~a-~~~G~G---E--~l~pl~~---~~~~~-~vlv~P~--~~vST~~vY~~~~~~~~-----~~---~~~~ 196 (258)
T PRK05905 137 IPFFLSGYKTA-YISDYG---S--QVEDLIG---QFKLT-YKVIFMN--VNVSTKKVFEKFDDNQH-----VI---KNNF 196 (258)
T ss_pred cceEEeCCccE-EEEeeC---c--eeEECCC---CCCce-EEEECCC--CCCCHHHHHHhhccccC-----Cc---ccch
Confidence 9999999 885 444532 1 2344421 12334 4455554 57888877764311100 00 0011
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEee
Q 014714 243 VQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIAR 320 (420)
Q Consensus 243 ~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~ 320 (420)
..++..+.++. ... -.|.|+++.+..+ |...++++.+.+ .|+ .+.+||||||+|++-.
T Consensus 197 ~~~~~~~~~~~----~~~---~~NdLe~~a~~~~-------P~i~~~~~~l~~----~g~--~a~MSGSGstvF~l~~ 254 (258)
T PRK05905 197 KTIIKNLKENI----VVN---IHNDLQEPCFELY-------PNLLYKYNELLN----DGF--YTILSGAGSSFIVIKK 254 (258)
T ss_pred HHHHHHHHHhh----hcc---cccccHHHHHHhC-------hHHHHHHHHHHh----CCC--CEEEeCcchhheEEee
Confidence 11112222111 111 1367877776554 566667666654 464 5568899999999854
No 30
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=186.03 Aligned_cols=281 Identities=15% Similarity=0.154 Sum_probs=191.2
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHHHHH
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSR 89 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r~~ 89 (420)
+++-+-.++++|.--|.+- =.+.++++||. ..+-+.+++.+ +.+.++|.. |..++.++++..
T Consensus 4 v~tpSrlH~gliDl~G~~G-----Rv~GgvG~aLe--~P~l~i~~~~s-----~~~~~~ge~------~~~~~~~~a~~~ 65 (312)
T COG1907 4 VRTPSRLHAGLIDLNGSIG-----RVDGGVGLALE--EPRLEIEAKPS-----DDIEVDGED------RRERVEKAARLV 65 (312)
T ss_pred EecCceeeeccccCCCccc-----ceecceeEEee--CCceEEEEecc-----ccccccchh------hHHHHHHHHHHh
Confidence 4444445566664334332 23668899998 45666666443 445555432 223455555555
Q ss_pred ccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc---cc
Q 014714 90 ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA---CR 166 (420)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa---~~ 166 (420)
+.. ..+++|++.+.||.+.||||.++.+.|+..|++++|+++++.+||+.+.++|.-|+ ..
T Consensus 66 le~----------------~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG~tSgiGv~a 129 (312)
T COG1907 66 LEV----------------GEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRGGTSGIGVYA 129 (312)
T ss_pred hcc----------------cCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccCCccceeEEE
Confidence 543 24789999999999999999999999999999999999999999999999985554 34
Q ss_pred ccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHH
Q 014714 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (420)
Q Consensus 167 sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~ 246 (420)
+-+|||++ +.|+...-..+-+-++-...++|+-|.+|+++|..++......+-..+....++--..+..+.+..+.+|+
T Consensus 130 fe~GGFIV-DGGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg~~~~~E~~if~~~~p~p~~~~~~ls~~vLm~mm 208 (312)
T COG1907 130 FEYGGFIV-DGGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERGVSGRREVDIFKKYCPVPLEEVGELSHRVLMKMM 208 (312)
T ss_pred EEECCEEE-ECCcccCcccCCCCceeeeecCCCceEEEEEecCCCccccchHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 56999985 77764210000010011123567667777888886667766665554444444444556666677899999
Q ss_pred HHHHcCCHHHHHHHHHhhhhhhhhhc---cccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccc
Q 014714 247 EAIQNHDFSSFAQLTCADSNQFHAVC---LDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 323 (420)
Q Consensus 247 ~Al~~~D~~~f~~~~~~dsn~lha~~---~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~ 323 (420)
+|+.++|++.|++.+. +++... ++.. ...|..+...++++.+.+ . ++ .+.+|.+|||+|++++++.
T Consensus 209 PavvE~Die~fg~~l~----~iQ~l~g~~f~~~-e~~~~~~~V~~iv~~m~~----~-a~-~agqSSwGPtvY~i~d~~~ 277 (312)
T COG1907 209 PAVVERDIESFGEALN----EIQELGGKWFKKV-EGGLQREDVKEIVDEMVE----A-AY-GAGQSSWGPTVYGIVDSRE 277 (312)
T ss_pred HHHHhhCHHHHHHHHH----HHHHHHhhhhhhh-hceeccHHHHHHHHHHHH----h-cc-cccccccCCEEEEeccccc
Confidence 9999999999999874 444444 6654 456778888888888876 2 45 3445689999999999888
Q ss_pred hHHHHHHHHHhhCC
Q 014714 324 IATELLQRLLFFFP 337 (420)
Q Consensus 324 ~~~~v~~~l~~~f~ 337 (420)
... +.+.+.+.|-
T Consensus 278 ~~~-~~~~~~~~~~ 290 (312)
T COG1907 278 AGS-VVRKLIDILL 290 (312)
T ss_pred cch-HHHHHHHHHH
Confidence 776 5555555553
No 31
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.88 E-value=6.6e-22 Score=191.50 Aligned_cols=180 Identities=18% Similarity=0.132 Sum_probs=129.4
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeee-CCCCceeEEEEEEcCCCCcceEEEcCcc-ccCCcchHHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTL-DPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISLGGGRYQNCLKEI 86 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL-~~~~L~~~t~v~~~~~~~~d~i~lnG~~-~~~~~~r~~~~l~~~ 86 (420)
..++.|.+|+.| .--||| ++|| ..+|+..++ + ||++.+++... ...+.+.+.. .+.+++.+.++++.+
T Consensus 2 ~~~apaKINL~L-~v~~kr-dGyH--~l~s~~~~i~~---l~D~l~i~~~~---~~~~~i~~~~~~p~~~NLv~kA~~~l 71 (257)
T PRK04181 2 VMKAYAKVNIFL-KILGKR-GNYH--ELISRFVLVKD---LFDEIEFVPKS---AESFELIGNFDCPLEENIIYKAYQEL 71 (257)
T ss_pred CccccceEEEEE-eeCcCC-CCCc--eeheeeeEccC---cCcEEEEEECC---CCCEEEEcCCCCCCCCcHHHHHHHHH
Confidence 356788888888 557999 9999 589999999 7 99999997633 2235554432 222456677777777
Q ss_pred HHH-ccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccc
Q 014714 87 RSR-ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (420)
Q Consensus 87 r~~-~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~ 165 (420)
++. ++... + ....+++|+++|+||+++|||||||++||++.++|++++++++.+||.++|.+...+++
T Consensus 72 ~~~~~~~~~----~-------~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGaDvP 140 (257)
T PRK04181 72 KNKGFSNEL----I-------EFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADVA 140 (257)
T ss_pred HHhcccccc----c-------cCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc
Confidence 763 32100 0 00147999999999999999999999999999999999999999999999999988999
Q ss_pred ccccc-CeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhh
Q 014714 166 RSLFG-GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 222 (420)
Q Consensus 166 ~sl~G-G~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~ 222 (420)
+|++| |.+ |..|.+ . ..++++. -+. . ++++.|. ..++|.+.+++
T Consensus 141 ffl~~~~~a-~~~G~G---e--~l~~l~~---~~~-~-~~lv~P~--~~vsT~~vy~~ 185 (257)
T PRK04181 141 FFISGYKSA-NVSGIG---E--IVEEFEE---EIL-N-LEIFTPN--IFCSTKAVYKA 185 (257)
T ss_pred EEecCCceE-EEEeeC---C--eeEECCC---CCC-e-EEEECCC--CCcCHHHHHHH
Confidence 99999 764 444432 1 2344421 122 3 4455554 57888777653
No 32
>PRK01123 shikimate kinase; Provisional
Probab=99.86 E-value=5.9e-20 Score=180.49 Aligned_cols=228 Identities=15% Similarity=0.125 Sum_probs=146.3
Q ss_pred EeeeCCCCceeEEEEEEcCCCCcceEEEcCccc---cCCcchHHHHHHHHHHHccccccccccccccccccccccEEEEE
Q 014714 40 SVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI---SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIAS 116 (420)
Q Consensus 40 svtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~---~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s 116 (420)
.++|+ +|++++|+..++ .++++|+.. ..+.+.+.++++.+++..+. ..+++|++
T Consensus 24 ~~~i~---l~~~v~v~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~i~i 80 (282)
T PRK01123 24 AFGID---LKTTATVELSDD----GGGIEGEISGNPDADTRLIERCVELVLERFGI----------------DYGATVRT 80 (282)
T ss_pred EEEec---cEEEEEEEECCC----CceeeecccCCCCCCchHHHHHHHHHHHHhCC----------------CCCEEEEE
Confidence 35887 899999977542 344444321 12245677777777776643 24799999
Q ss_pred ecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC---ccccccccCeEEEecccCCCCCC
Q 014714 117 FNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG---SACRSLFGGFVKWILGKEGNGSD 185 (420)
Q Consensus 117 ~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~g--------sG---sa~~sl~GG~V~~~~g~~~~g~d 185 (420)
+++||.++|||||||+++|++.|++++++.+++.++|.++|.+. +| ++++|+|||++++.... .
T Consensus 81 ~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~~~-----~ 155 (282)
T PRK01123 81 KSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDNRE-----M 155 (282)
T ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcCCC-----c
Confidence 99999999999999999999999999999999999999999773 34 56899999998764321 1
Q ss_pred ceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhh-ccchhHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhh
Q 014714 186 SLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESV-ETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCAD 264 (420)
Q Consensus 186 s~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~-~ts~~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~d 264 (420)
....+++ ++++++|+ +|.. .++|. ..+..+ ++. ....+.+..+++.+|+.. ++..|
T Consensus 156 ~~~~~~~-----~~~~~vv~-~p~~--~~~T~-~~r~~~l~~~-----------~~~~d~~~~~~~~~~l~~---~~~~~ 212 (282)
T PRK01123 156 KLLKRDE-----VELDVLVL-IPPE--GAFSA-SADVERMKLI-----------APYVDMAFELALDGEYFK---AMTLN 212 (282)
T ss_pred eEEEEec-----CCcEEEEE-ECCC--Ccchh-hhhhhhchhc-----------CcHHHHHHHHHhhccHHH---HHHhC
Confidence 1233443 23455554 4543 33333 233221 211 112334445556778753 33322
Q ss_pred hhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHHHHHHHHhh
Q 014714 265 SNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 335 (420)
Q Consensus 265 sn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~v~~~l~~~ 335 (420)
.+ ++...+.+.. +++... +..|++ ++..||+||++++++++++..+ +.++|++.
T Consensus 213 --~l--------~~~~~l~~~~-~~i~~a----~~~Ga~-ga~lSGaGptv~al~~~~~~~~-v~~~l~~~ 266 (282)
T PRK01123 213 --GL--------LYSSALGFPT-EPALEA----LEAGAV-GVGLSGTGPSYVAIVDEEDPEE-VKEAWEKY 266 (282)
T ss_pred --Cc--------hhhhhhCCCh-HHHHHH----HHCCCe-EEEEecCCCeEEEEeCCCCHHH-HHHHHHhC
Confidence 11 1222344443 333332 246888 5667799999999998776666 88888774
No 33
>PRK03817 galactokinase; Provisional
Probab=99.85 E-value=1.1e-18 Score=176.38 Aligned_cols=282 Identities=16% Similarity=0.193 Sum_probs=167.5
Q ss_pred EEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc---------ccC---Ccch
Q 014714 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE---------ISL---GGGR 78 (420)
Q Consensus 11 ~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~---------~~~---~~~r 78 (420)
.++||..|-++ |.+-+-+.. . .|+++++ .|++++++..+ ..++...+.. ... ..+.
T Consensus 2 ~~~APgrv~L~---Geh~d~~~g--~-~l~~aI~---~~~~v~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (351)
T PRK03817 2 KVKSPGRVNLI---GEHTDYNDG--Y-VLPFAIN---LYTFLEIEKSE---KFIFYSENFNEEKTFELDKLEKLNSWADY 69 (351)
T ss_pred EEEeeeeEEEe---ccceeeCCC--e-EEEEEec---CcEEEEEEeCC---eEEEEECCCCCcEEEeCCccCCCCchHHH
Confidence 47789999986 555443333 3 8999998 67777775432 1222211110 000 1123
Q ss_pred HHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 014714 79 YQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (420)
Q Consensus 79 ~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr 158 (420)
+..++..+++... ...+++|.++++||.++|||||||.++|++.|++++++++++.+++.++|.
T Consensus 70 ~~~~~~~~~~~~~----------------~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~ 133 (351)
T PRK03817 70 IKGVIWVLEKRGY----------------EVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAR 133 (351)
T ss_pred HHHHHHHHHHcCC----------------CCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3344443332211 135789999999999999999999999999999999999999999999999
Q ss_pred hccCcc---ccccccCeEEEecccCC----CCCCceEEEccCCCCCCCceEEEEEECCCCCccCchH------Hhhh---
Q 014714 159 QGSGSA---CRSLFGGFVKWILGKEG----NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTT------GMRE--- 222 (420)
Q Consensus 159 ~gsGsa---~~sl~GG~V~~~~g~~~----~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~------~m~~--- 222 (420)
+++.+. ...++++++....+... +.......+++.+ +++++++ +.+.....++++. .++.
T Consensus 134 ~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~vv-~~sg~~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T PRK03817 134 EAENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMTLEYEYVPFP---EDYEILV-FDTGVKRELASSEYNERRQECEEALK 209 (351)
T ss_pred HhcccccCCCCcCchhhheeeccCCEEEEEecCCCceEEEecC---CCcEEEE-EeCCCccccccchhHHHHHHHHHHHH
Confidence 887642 12234444322111000 0011112233211 3445443 4443323333221 1111
Q ss_pred hhc-------cc-------hhHHHHHhhhc--hHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchH
Q 014714 223 SVE-------TS-------LLLQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTS 286 (420)
Q Consensus 223 ~~~-------ts-------~~~~~~~~~~~--~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s 286 (420)
.++ +. +.+..++.+++ .+++..++.||+++|++.|++++...+..+|..+. ..+|..
T Consensus 210 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~-------~s~p~l 282 (351)
T PRK03817 210 ILGKKSSKEVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYE-------VSCEEL 282 (351)
T ss_pred HhCccchhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-------CCcHHH
Confidence 100 00 11111222221 35788999999999999999998765566776432 136677
Q ss_pred HHHHHHHHHHHHhcCCCcEEEeeCCC--CceEEEeeccchHHHHHHHHHhhCC
Q 014714 287 HRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFFP 337 (420)
Q Consensus 287 ~~ii~~v~~~~~~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~l~~~f~ 337 (420)
.++++...+ .|++++. +|||| |+++++++++..++ +.+.+++.|.
T Consensus 283 d~l~~~a~~----~GalGak-lsGaG~Gg~vlal~~~~~~~~-~~~~l~~~~~ 329 (351)
T PRK03817 283 DFFVEFALE----LGAYGAR-LTGAGFGGSAIALVDKGKFES-IGEELLEEYK 329 (351)
T ss_pred HHHHHHHHH----cCCCEEE-EecCCCCeEEEEEEchHHHHH-HHHHHHHHHH
Confidence 777776654 6998554 55888 99999998877666 8888877664
No 34
>PRK00555 galactokinase; Provisional
Probab=99.83 E-value=3e-18 Score=174.06 Aligned_cols=281 Identities=15% Similarity=0.148 Sum_probs=170.6
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccc-----------cC---
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI-----------SL--- 74 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~-----------~~--- 74 (420)
+.+++||..|.|| |.+-+-+. +. .+.++++ .++++.+...+ .+.+.+..... ..
T Consensus 2 ~~~~~APGRv~Li---GEH~dy~~--g~-vl~~Ai~---~~~~v~~~~~~---~~~i~i~s~~~~~~~~~~~~~~~~~~~ 69 (363)
T PRK00555 2 TVRYAAPGRINLI---GEHTDYNL--GF-ALPIALP---QRTVVTFTPEH---TDAITASSDRADGSARIPLDTTPGQVT 69 (363)
T ss_pred CEEEEcCceEEee---cccccCCC--Ce-EEeEEee---ccEEEEEEECC---CCEEEEEECCCCCceEEecCCCCCCCc
Confidence 4678999999997 55544443 33 8889998 56777776654 23343321110 00
Q ss_pred -CcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHH
Q 014714 75 -GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQL 153 (420)
Q Consensus 75 -~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL 153 (420)
..+.+..++..+++... ...+++|.+.++||.++|||||||..+|++.|++++++++++.+++
T Consensus 70 ~w~~y~~gv~~~l~~~g~----------------~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~l 133 (363)
T PRK00555 70 GWAAYAAGVIWALRGAGH----------------PVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQ 133 (363)
T ss_pred chHHHHHHHHHHHHHcCC----------------CCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 12234444444444211 1247899999999999999999999999999999999999999999
Q ss_pred HHHHHhcc----Ccc------ccccccCe---EEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHh
Q 014714 154 SAIARQGS----GSA------CRSLFGGF---VKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGM 220 (420)
Q Consensus 154 ~~iAr~gs----Gsa------~~sl~GG~---V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m 220 (420)
.++|..++ |.+ ..|+|||. +..+... . ...+++.+..++.+. +++++...+...++..+
T Consensus 134 a~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~d~~~----~--~~~~v~~~~~~~~~~--lvv~~s~~~~~~~~~~y 205 (363)
T PRK00555 134 ARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLIDFRD----L--TVRPVAFDPDAAGVV--LLLMDSRARHRHAGGEY 205 (363)
T ss_pred HHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEEEcCC----C--cEEEeccCCCcCceE--EEEEcCCCcccccchhh
Confidence 99997653 333 34899974 3333221 1 123443211222223 34454433322121111
Q ss_pred -------hhh---hccc------------------hhHHHHHhhhc--hHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhh
Q 014714 221 -------RES---VETS------------------LLLQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHA 270 (420)
Q Consensus 221 -------~~~---~~ts------------------~~~~~~~~~~~--~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha 270 (420)
+.. +.+. +....|..+++ ..++..+..+|.++|++.|+++| ++.|+
T Consensus 206 ~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm----~~~h~ 281 (363)
T PRK00555 206 AARRASCERAAADLGVSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLL----TASHA 281 (363)
T ss_pred HHHHHHHHHHHHHhCccchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH----HHhhH
Confidence 100 1000 00001111111 24889999999999999999987 36677
Q ss_pred hccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCC--CCceEEEeeccchHHHHHHHHHhhCCC
Q 014714 271 VCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDA--GPNAVLIARNRKIATELLQRLLFFFPP 338 (420)
Q Consensus 271 ~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgA--GPtv~~i~~~~~~~~~v~~~l~~~f~~ 338 (420)
.+++.+ .--+|....+++... ..|++ ++-+||| ||+++++++.+...+ +.+.+.+.|.+
T Consensus 282 ~lr~~~---~vS~~~ld~l~~~a~----~~Ga~-GaklsGaG~Gg~vial~~~~~~~~-~~~~l~~~y~~ 342 (363)
T PRK00555 282 SMRDDF---EITTERIDLIADSAV----RAGAL-GARMTGGGFGGCVIALVPADRAED-VADTVRRAAVT 342 (363)
T ss_pred HHHhhc---CCCChhHHHHHHHHH----hcCCe-EEEECCCCccCeEEEEEchhHHHH-HHHHHHHHHHH
Confidence 776432 112355555554443 36998 4455688 599999998776666 88888887754
No 35
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.83 E-value=1.2e-18 Score=169.36 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=142.4
Q ss_pred EeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecC
Q 014714 40 SVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119 (420)
Q Consensus 40 svtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nn 119 (420)
.++++ ++++++|+..+ ++++.+... ...+++..+++.+++.++. ..+++|+++++
T Consensus 18 a~aI~---~~~~v~v~~~~---~~~~~~~~~---~~~n~i~~~~~~~~~~~~~----------------~~g~~i~i~s~ 72 (261)
T TIGR01920 18 AFGID---LWVEAKVREGD---EAGVSTYVR---GNPRLIERILTAIRSKFGI----------------VDGLEVEVESE 72 (261)
T ss_pred EEEcc---CceEEEEEECC---CCceeeeec---CChHHHHHHHHHHHHhcCC----------------CCCEEEEEecC
Confidence 45666 78888887754 233322111 1135677788888877653 35789999999
Q ss_pred CCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC---ccccccccCeEEEecccCCCCCCceE
Q 014714 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG---SACRSLFGGFVKWILGKEGNGSDSLA 188 (420)
Q Consensus 120 iP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~g--------sG---sa~~sl~GG~V~~~~g~~~~g~ds~a 188 (420)
||.++|||||||.++|++.|++++++++++.+++.++|.+. .| +++.|+|||++..+... ....
T Consensus 73 iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~~~~-----~~~~ 147 (261)
T TIGR01920 73 IPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITDNRR-----MKIL 147 (261)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEeCCC-----ceEE
Confidence 99999999999999999999999999999999999999773 23 45789999998653211 1122
Q ss_pred EEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhh
Q 014714 189 VQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQF 268 (420)
Q Consensus 189 ~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~l 268 (420)
.+++ .|+++++ +++|.. .+++....+..+ .. .....+.+..+++.+|+. ++|..|...+
T Consensus 148 ~~~~----~~~~~~v-v~~p~~--~~tt~~~~~~~l----------~~-~~~~~~~~~~~~~~~~l~---~am~~n~~l~ 206 (261)
T TIGR01920 148 KRDK----LEGCTAA-VLVPKE--GERRENVDLNRF----------RR-ISPVVEEAFNLALRGEYL---KAMVLNGVAY 206 (261)
T ss_pred EecC----CCCceEE-EEECCC--CcccccccHHHh----------hh-cchHHHHHHHHHhhCCHH---HHHhhChHHh
Confidence 2232 1444444 444543 333222212111 11 134566667778888877 4444433221
Q ss_pred hhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHHHHHHHHhh
Q 014714 269 HAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 335 (420)
Q Consensus 269 ha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~v~~~l~~~ 335 (420)
+. .++. .. ++++.. ++.|++ ++.+||+||++++++++. .+ +.++|++.
T Consensus 207 -~~----~lg~-----~~-~~i~~a----~~~Gal-ga~lSGaG~sv~aL~~~~--~~-v~~~~~~~ 254 (261)
T TIGR01920 207 -AT----ALGY-----PL-EPASKA----LEAGAA-AAGLSGKGPSYFALTEDP--EE-AAEALMEF 254 (261)
T ss_pred -HH----hhCC-----Ch-HHHHHH----HHcCCc-EEeecCCCCeEEEEeCCH--HH-HHHHHHhC
Confidence 11 1111 11 233333 347998 666779999999998755 44 88887763
No 36
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.83 E-value=2.3e-18 Score=167.79 Aligned_cols=253 Identities=20% Similarity=0.229 Sum_probs=156.0
Q ss_pred ecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCC-----cchHHHHHHHHHH
Q 014714 14 TPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLG-----GGRYQNCLKEIRS 88 (420)
Q Consensus 14 Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~-----~~r~~~~l~~~r~ 88 (420)
||..+-++ |.+-+.+. ...|.++++ .++++.+...++ ..++..+....... .......++...+
T Consensus 1 aPgkv~L~---GEH~v~~g---~~al~~aI~---~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 69 (273)
T TIGR00549 1 APGKIILF---GEHAVVYG---EPAIAAPIP---LRTTVTVIESSD--GSFIESDLGRGSLDDAPQELDGLVSYIAEALS 69 (273)
T ss_pred CCceEEEE---ecChhccC---CCeeEEEec---ccEEEEEEEcCC--CceEeccccCCcHhHhhHHHHHHHHHHHHHHH
Confidence 46666665 66655543 459999999 567776655432 12232222211100 1111223332222
Q ss_pred HccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc-------
Q 014714 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS------- 161 (420)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gs------- 161 (420)
.+... ...+++|.++++||.++|||||||.++|++.|++++++.+++.+++.++|++++
T Consensus 70 ~~~~~--------------~~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~ 135 (273)
T TIGR00549 70 YFSEL--------------NPPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKP 135 (273)
T ss_pred Hhhcc--------------CCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 22210 012489999999999999999999999999999999999999999999998652
Q ss_pred -C-ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhc----cch-hHHHHH
Q 014714 162 -G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE----TSL-LLQHRA 234 (420)
Q Consensus 162 -G-sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~----ts~-~~~~~~ 234 (420)
| +.+.|+|||++.++.+. +. .++.++ ++++++ ++... ...+|.+ +.+.+. ..+ .++...
T Consensus 136 sG~D~~~~~~Gg~~~~~~~~---~~----~~~~~~---~~~~lv--l~~tg-~~~~T~~-~~~~v~~~~~~~~~~~~~~~ 201 (273)
T TIGR00549 136 SGIDTATSTYGGPVYFEKGE---GE----FTKLIS---LDGYFV--IADTG-VSGSTKE-AVARVRQLLERFPELIDSIM 201 (273)
T ss_pred chHhHHHHhcCCeEEEEcCC---Cc----eeeccC---CCeEEE--EEECC-CCCcHHH-HHHHHHHHHHhCHHHHHHHH
Confidence 3 45778999999776442 11 122211 233433 33333 3444443 332221 111 222222
Q ss_pred hhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCc
Q 014714 235 KEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPN 314 (420)
Q Consensus 235 ~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPt 314 (420)
+. ...++.+++.+|.++|++.|++++..++..+|+.. -.+|...++++.+++ .|+. ++-++|||+.
T Consensus 202 ~~-~~~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~~~--------vs~p~l~~l~~~~~~----~Ga~-gaklsGaG~G 267 (273)
T TIGR00549 202 DA-IGELTLEAKAALQDGDVESLGELMNINQGLLKALG--------VSHPKLDQLVETARK----AGAL-GAKLTGAGGG 267 (273)
T ss_pred HH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHH----CCCc-eeeeccCCCC
Confidence 32 24577888999999999999999876656666532 135677777776654 5887 4556699999
Q ss_pred eEEEe
Q 014714 315 AVLIA 319 (420)
Q Consensus 315 v~~i~ 319 (420)
-|+|+
T Consensus 268 G~~i~ 272 (273)
T TIGR00549 268 GCMIA 272 (273)
T ss_pred ceEEe
Confidence 88875
No 37
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.81 E-value=1.3e-17 Score=170.83 Aligned_cols=282 Identities=21% Similarity=0.278 Sum_probs=171.5
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEE---cCc--c------ccCC---
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL---NGK--E------ISLG--- 75 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~l---nG~--~------~~~~--- 75 (420)
+.++||..|.|+ |.+-+ | .+.+.|+++++ +++++++...++ +.+.+ +.. . .+..
T Consensus 18 ~~~~APgrv~L~---GeH~d-y--~g~~vl~~AI~---~~~~v~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~ 85 (386)
T TIGR00131 18 FTARAPGRVNLI---GEHTD-Y--NDGSVLPCAID---FGTLCAVAVRDD---KNVRIYLANADNKFAERSLDLPLDGSE 85 (386)
T ss_pred EEEECCcceEee---cccee-e--CCceEEeeEee---ccEEEEEEECCC---CeEEEEECCCCCcceEEECCCCCCCCC
Confidence 678999999996 66655 3 35779999998 788888876542 23322 111 0 0010
Q ss_pred ----cchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHH
Q 014714 76 ----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQS 151 (420)
Q Consensus 76 ----~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~ 151 (420)
.+.+..++..+++.... ...+++|.+.++||.++|||||||..+|++.|++++++++++.+
T Consensus 86 ~~~w~~y~~~~~~~~~~~~~~---------------~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~ 150 (386)
T TIGR00131 86 VSDWANYFKGVLHVAQERFNS---------------FPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSK 150 (386)
T ss_pred CCCcHhHHHHHHHHHHHhcCC---------------CCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHH
Confidence 13455566666654431 13489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc----Ccc------ccccccC--eEEEecccCCCCCCceEEEccCCCCCC--CceEEEEEECCCCCccCch
Q 014714 152 QLSAIARQGS----GSA------CRSLFGG--FVKWILGKEGNGSDSLAVQLVDEEHWN--DLVIIIAVVSSRQKETSST 217 (420)
Q Consensus 152 eL~~iAr~gs----Gsa------~~sl~GG--~V~~~~g~~~~g~ds~a~~i~~~~~wp--~l~~vvlvv~~~~k~vsst 217 (420)
++.++|..++ |.+ ..|.+|| .+++..-. +. ....++ +| +++++| +.+..+.... .
T Consensus 151 ~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~---~~--~~~~~~----~~~~~~~lvv-~~s~~~~~t~-~ 219 (386)
T TIGR00131 151 QILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECR---SL--KATPFK----FPQLGIAFVI-ANTNVKRTLA-P 219 (386)
T ss_pred HHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcC---CC--ceeeec----CCCCCeEEEE-EeCCCccccc-c
Confidence 9999997663 332 4478998 23332211 11 122332 23 344433 3333211111 0
Q ss_pred HHh----------------------hhhhccc-h-----------hHHHHHhhh--chHHHHHHHHHHHcCCHHHHHHHH
Q 014714 218 TGM----------------------RESVETS-L-----------LLQHRAKEV--VPKRIVQMEEAIQNHDFSSFAQLT 261 (420)
Q Consensus 218 ~~m----------------------~~~~~ts-~-----------~~~~~~~~~--~~~~~~~l~~Al~~~D~~~f~~~~ 261 (420)
.++ +...+.. . ....|..++ -..|+..++.+|.++|++.|+++|
T Consensus 220 ~~y~~r~~e~~~a~~~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm 299 (386)
T TIGR00131 220 SNYNTRRQECTTAANFLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALM 299 (386)
T ss_pred chhHHHHHHHHHHHHHhccccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 111 1100000 0 001111221 134677899999999999999987
Q ss_pred HhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCC--ceEEEeeccchHHHHHHHHHhhCCCC
Q 014714 262 CADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFPPN 339 (420)
Q Consensus 262 ~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGP--tv~~i~~~~~~~~~v~~~l~~~f~~~ 339 (420)
.. -|..+.+.| .-.+|....+++.+. +..|++++.+| |||+ .++++++++..++ +.++|.+.|+..
T Consensus 300 ~~----sh~~l~~~~---~vs~peld~lv~~a~---~~~GAlGaklt-GaG~GG~vial~~~~~~~~-v~~~~~~~y~~~ 367 (386)
T TIGR00131 300 NE----SHASCDDDY---ECTCPEIDELVCSAA---LVNGSGGSRMT-GAGFGGCTVHLVPNENVDK-VRQAVADKYPKK 367 (386)
T ss_pred HH----hhHHHHHhc---CCCCHHHHHHHHHHH---hcCCCcEEEEe-cCCCceEEEEEEcHHHHHH-HHHHHHHHHHHh
Confidence 43 344444321 223455555554432 34699966655 8885 7777888777666 999998888654
Q ss_pred CC
Q 014714 340 SE 341 (420)
Q Consensus 340 ~~ 341 (420)
.+
T Consensus 368 ~~ 369 (386)
T TIGR00131 368 TG 369 (386)
T ss_pred hC
Confidence 33
No 38
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.81 E-value=1.6e-17 Score=163.89 Aligned_cols=272 Identities=19% Similarity=0.258 Sum_probs=175.7
Q ss_pred EEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc--cc-C----CcchHHHHH
Q 014714 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--IS-L----GGGRYQNCL 83 (420)
Q Consensus 11 ~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~--~~-~----~~~r~~~~l 83 (420)
+++||.-+-+ .|.+-..|. ...|+++++ ++.+++++.++ +.++++.... .. . ....++..+
T Consensus 2 ~~~aPgKliL---~GEHAVVyG---~pAI~~aI~---~~~~v~~~~s~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~v 69 (307)
T COG1577 2 SVSAPGKLIL---FGEHAVVYG---YPAIAAAID---LRVTVTISESD---SNKIVIESSDLKSSTLERDEDEGYIQAAV 69 (307)
T ss_pred cccccccEEE---EecceeeeC---Cchhheeee---eeEEEEEEecC---CCcEEEeccCCCCccccccccchHHHHHH
Confidence 5678888776 488888884 569999998 78888887764 3345553322 11 1 113455566
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----
Q 014714 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ---- 159 (420)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~---- 159 (420)
+.+.++... -...++++++.+++|.++|||||||..+|++.|++++||.+++++++.++|.+
T Consensus 70 ~~~~e~~~~--------------~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~ 135 (307)
T COG1577 70 RLASELLNQ--------------SSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELI 135 (307)
T ss_pred HHHHHHhcc--------------cCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 656555542 01457888889999999999999999999999999999999999999999953
Q ss_pred --ccC---ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhcc-----chh
Q 014714 160 --GSG---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET-----SLL 229 (420)
Q Consensus 160 --gsG---sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~t-----s~~ 229 (420)
|.+ +.+=|.|||++.+.++.. ..++.. .|.. .++|.... .. .+|..+.+.+.. ...
T Consensus 136 vqG~~Sg~D~a~~~~gg~v~~~~~~~-------~~~l~~--~~~~---~~~I~~tg-~~-~sT~e~V~~V~~l~~~~~~~ 201 (307)
T COG1577 136 VQGKASGIDIATITYGGLVAFKKGFD-------FEKLEI--ELLG---TLVIGDTG-VP-GSTKELVAGVAKLLEEEPEV 201 (307)
T ss_pred HcCCCCcccceEEEeCCEEEEecCCC-------cccccc--ccCC---eEEEEEcC-Cc-CcHHHHHHHHHHHHHhhhHH
Confidence 322 445689999997765421 223321 1222 22333332 33 344433322221 223
Q ss_pred HHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEee
Q 014714 230 LQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTF 309 (420)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~ts 309 (420)
++..++. ..+.+.++..+|.++|++.|+++|..++..|.+... .+|...++++..+ ..|+.++..|
T Consensus 202 ~~~~~~~-ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~LgV--------s~~~L~~lv~~a~----~~Ga~gaKlT- 267 (307)
T COG1577 202 IDPILDA-IGELVQEAEAALQTGDFEELGELMNINQGLLKALGV--------STPELDELVEAAR----SLGALGAKLT- 267 (307)
T ss_pred HHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHH----hcCccccccc-
Confidence 3444443 357889999999999999999999777666655443 3456666665555 4688766655
Q ss_pred CCCCceEEEeeccc--hHHHHHHHHHhhC
Q 014714 310 DAGPNAVLIARNRK--IATELLQRLLFFF 336 (420)
Q Consensus 310 gAGPtv~~i~~~~~--~~~~v~~~l~~~f 336 (420)
|||-.-++|+..++ ..+.+...+.+++
T Consensus 268 GAGgGGc~IaL~~~~~~~~~l~~~~~~~~ 296 (307)
T COG1577 268 GAGGGGCIIALAKNEEIAETLSNRLEKAG 296 (307)
T ss_pred cCCCCceEEEEeccchHHHHHHHHHHhcC
Confidence 88877666655443 2332555555444
No 39
>PRK05322 galactokinase; Provisional
Probab=99.80 E-value=3.7e-17 Score=167.46 Aligned_cols=280 Identities=16% Similarity=0.168 Sum_probs=170.5
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc-------------ccC-C
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-------------ISL-G 75 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~-------------~~~-~ 75 (420)
..++||..|-|+ |.+-+-+..| .|+++++ .++++++...++ +++.+.... ... .
T Consensus 20 ~~~~APgRv~L~---GEH~d~~g~~---vl~~AI~---~~~~v~~~~~~~---~~i~i~s~~~~~~~~~~~~~~~~~~~~ 87 (387)
T PRK05322 20 DVFFSPGRINLI---GEHTDYNGGH---VFPAAIT---LGTYGAARKRDD---KKVRLYSANFEDLGIIEFDLDDLSFDK 87 (387)
T ss_pred eEEEcCceeEec---ccceeecCce---eeeeecc---ceEEEEEEECCC---CEEEEEECCCCCCceEEEeccccCCCC
Confidence 567899999997 5555544443 7889998 678887766542 233331100 000 0
Q ss_pred ----cchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHH
Q 014714 76 ----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQS 151 (420)
Q Consensus 76 ----~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~ 151 (420)
.+.+..++..++..... ...+++|.+.++||.++|||||||..+|++.|++++++++++.+
T Consensus 88 ~~~w~~y~~gvi~~l~~~~~~---------------~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~ 152 (387)
T PRK05322 88 EDDWANYPKGVLKFLQEAGYK---------------IDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRL 152 (387)
T ss_pred ccchHHHHHHHHHHHHHcCCC---------------CCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 11233344444332110 12589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc----Cc------cccccccC---eEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchH
Q 014714 152 QLSAIARQGS----GS------ACRSLFGG---FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTT 218 (420)
Q Consensus 152 eL~~iAr~gs----Gs------a~~sl~GG---~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~ 218 (420)
+|.++|.+.+ |. ...|.+|| .+..+... .+ ...++. .++++.+ +|++...+....+.
T Consensus 153 ~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~----~~--~~~~~~--~~~~~~l--vv~dsg~~~~~~~~ 222 (387)
T PRK05322 153 ELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNT----LE--YEYVPL--DLGDYVI--VIMNTNKRRELADS 222 (387)
T ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCC----Cc--eEEecc--CCCCeEE--EEEECCCccccCcc
Confidence 9999997764 33 34578997 33333221 11 223321 1223333 34454433321111
Q ss_pred ----------Hhhhhhcc----------c-hhHHH------------HHhhh--chHHHHHHHHHHHcCCHHHHHHHHHh
Q 014714 219 ----------GMRESVET----------S-LLLQH------------RAKEV--VPKRIVQMEEAIQNHDFSSFAQLTCA 263 (420)
Q Consensus 219 ----------~m~~~~~t----------s-~~~~~------------~~~~~--~~~~~~~l~~Al~~~D~~~f~~~~~~ 263 (420)
.+.+.+.. . ..+.. |+.++ ...|+..++.||+++|++.|+++|..
T Consensus 223 ~yn~r~~e~~~a~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~ 302 (387)
T PRK05322 223 KYNERRAECEKALEELQKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNA 302 (387)
T ss_pred hhhHHHHHHHHHHHHHhhhcCccchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11111110 0 01111 11111 13578999999999999999999876
Q ss_pred hhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCC--ceEEEeeccchHHHHHHHHHhhCCC
Q 014714 264 DSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFPP 338 (420)
Q Consensus 264 dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGP--tv~~i~~~~~~~~~v~~~l~~~f~~ 338 (420)
++..||..+.-+ .|....+++...+ ..|++ ++.++|||| +++++++.+..++ +.+.|.+.|..
T Consensus 303 sh~~L~~~y~~s-------~~eld~lv~~a~~---~~Ga~-garlsGaG~GG~vial~~~~~~~~-~~~~l~~~y~~ 367 (387)
T PRK05322 303 SHVSLRDDYEVT-------GLELDTLVEAAWK---QEGVL-GARMTGAGFGGCAIAIVKKDKVEA-FKENVGKAYEE 367 (387)
T ss_pred hhHHHHhhhcCC-------CHhHHHHHHHHHh---cCCcc-EEEEecCCCceEEEEEEcHHHHHH-HHHHHHHHHHH
Confidence 665677655432 2556656555532 35888 556669999 7888888777666 88888777654
No 40
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.79 E-value=9.2e-18 Score=159.43 Aligned_cols=248 Identities=16% Similarity=0.186 Sum_probs=155.5
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRS 88 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r~ 88 (420)
+.+++||.-+.+|-- +|+--=-.+.|| |+++++|+.++ +..+-|.+. .+.+++.+|++.+++
T Consensus 2 ~~~a~A~g~~TIiNA---------iatG~G~Afgid---L~v~a~v~~~~-----~~~~~~~~~-~d~~li~~~~~~v~e 63 (278)
T COG1685 2 MGRARAYGGGTIINA---------IATGKGSAFGID---LKVEAEVRLSD-----EGKVRGEPE-GDTRLIERCVERVRE 63 (278)
T ss_pred CceEEecCceeEeee---------hhcCccceeeec---ceEEEEEEEcC-----ccccccCCC-CChHHHHHHHHHHHH
Confidence 356677776666522 222111124565 77899998864 333344332 235678889999999
Q ss_pred HccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc---C---
Q 014714 89 RACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---G--- 162 (420)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gs---G--- 162 (420)
+++. ..++++++++.||.+.||.||||...|++.|+.+++|.++++.++.+++.+.| |
T Consensus 64 ~~g~----------------~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSv 127 (278)
T COG1685 64 KYGI----------------PLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSV 127 (278)
T ss_pred HcCC----------------CcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceE
Confidence 9986 46899999999999999999999999999999999999999999999886553 3
Q ss_pred -----ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhh
Q 014714 163 -----SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEV 237 (420)
Q Consensus 163 -----sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~ 237 (420)
++|.|+|||+|+.++.. ..+..+. .-+++.++|++ |.++ ..+.....+++..-+++++.
T Consensus 128 TGA~DDa~AS~~GG~~iTDN~~-----m~Ilrr~----~~~~~~vlI~~-p~~k-~~~~~vdv~~~r~~a~~~e~----- 191 (278)
T COG1685 128 TGAFDDACASYLGGIVITDNRK-----MRILRRL----DLPELTVLILA-PGEK-RLSANVDVNRLRLIAPVVEE----- 191 (278)
T ss_pred eccchHHHHHHhCCeEEecchh-----heehhcc----ccCCceEEEEe-cCCc-cccccCCHHHHHHhhHHHHH-----
Confidence 67999999999876542 1122222 23566666655 4432 11111111111111222221
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEE
Q 014714 238 VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 317 (420)
Q Consensus 238 ~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~ 317 (420)
....-.+|++..- +.++..-|+..|.-....+.+.++ .|+. ++..||.||+.|+
T Consensus 192 -------A~~lA~~G~~~~A-------------m~lNG~~y~~aLG~~~e~~~~ale-----~GA~-~aglSGtGPa~~A 245 (278)
T COG1685 192 -------AFRLALKGEYFKA-------------MVLNGILYCSALGYDLEPALKALE-----AGAA-AAGLSGTGPAYFA 245 (278)
T ss_pred -------HHHHHhcccHHHH-------------HHHhHHHHHHHhCCChHHHHHHHh-----cccc-eeccCCCCCceEE
Confidence 1111234565433 222222234445555665666654 5887 6677899999999
Q ss_pred EeeccchHHHHHHHHHhh
Q 014714 318 IARNRKIATELLQRLLFF 335 (420)
Q Consensus 318 i~~~~~~~~~v~~~l~~~ 335 (420)
+++++ .+ +.+++.+.
T Consensus 246 l~~~~--~~-v~ea~~~~ 260 (278)
T COG1685 246 LTEDP--EE-VAEAWSKI 260 (278)
T ss_pred EecCc--HH-HHHHHHhC
Confidence 99877 34 77776554
No 41
>PRK05101 galactokinase; Provisional
Probab=99.78 E-value=1.1e-16 Score=163.74 Aligned_cols=281 Identities=16% Similarity=0.209 Sum_probs=167.9
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc-------------c-cC-
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-------------I-SL- 74 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~-------------~-~~- 74 (420)
..++||..|.|+ |+|-+ |+ +..+|++++| +++++.+...++ +.+.+.... . ..
T Consensus 21 ~~~~APgRvnL~---GeH~D-y~--gg~vL~~AId---~~~~v~i~~~~~---~~i~v~s~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PRK05101 21 HTIQAPGRVNLI---GEHTD-YN--DGFVLPCAID---YQTVISCAKRDD---RIVRVIAADYDNQQDEFSLDAPIVPHP 88 (382)
T ss_pred eEEECCceEEEe---cccee-ec--CCEEEEEEec---ccEEEEEEECCC---CEEEEEECCCCCCceEEecCcccccCC
Confidence 578999999995 88877 44 3559999998 788888876542 233321100 0 00
Q ss_pred ---CcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHH
Q 014714 75 ---GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQS 151 (420)
Q Consensus 75 ---~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~ 151 (420)
..+.+..++..++..... ..+++|.+.++||.++|||||||..+|++.|++++++++++.+
T Consensus 89 ~~~w~~yv~~~~~~l~~~~~~----------------~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~ 152 (382)
T PRK05101 89 EQQWANYVRGVVKHLQERNPD----------------FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGA 152 (382)
T ss_pred CCchHHHHHHHHHHHHHhCCC----------------CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHH
Confidence 123355566655543321 2478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc----Ccccc------ccccCe--EEE-ecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCcc----
Q 014714 152 QLSAIARQGS----GSACR------SLFGGF--VKW-ILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET---- 214 (420)
Q Consensus 152 eL~~iAr~gs----Gsa~~------sl~GG~--V~~-~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~v---- 214 (420)
+|.++|.+++ |.+|. |.+||. +++ +... . ....++.+ ++++++| ++...+..
T Consensus 153 ~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~----~--~~~~~~~~---~~~~~vv--~~sg~~~~l~~~ 221 (382)
T PRK05101 153 EIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRS----L--ETKAVPMP---EGVAVVI--INSNVKRGLVDS 221 (382)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCC----C--ceEEeeCC---CCcEEEE--EeCCCCcccccc
Confidence 9999997663 44332 788872 333 3221 1 12333321 3444433 33322221
Q ss_pred --CchH-Hhh---h-----hhcc-------------chhHHHHHhhhch--HHHHHHHHHHHcCCHHHHHHHHHhhhhhh
Q 014714 215 --SSTT-GMR---E-----SVET-------------SLLLQHRAKEVVP--KRIVQMEEAIQNHDFSSFAQLTCADSNQF 268 (420)
Q Consensus 215 --sst~-~m~---~-----~~~t-------------s~~~~~~~~~~~~--~~~~~l~~Al~~~D~~~f~~~~~~dsn~l 268 (420)
.++. +++ + .+.. .+....|+.+++. .++.+...||+++|++.|+++|...
T Consensus 222 ~y~~r~~e~~~A~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~s---- 297 (382)
T PRK05101 222 EYNTRRQQCETAARFFGVKALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAES---- 297 (382)
T ss_pred chhHHHHHHHHHHHHhChHhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH----
Confidence 1121 000 0 0000 0111112333222 4788899999999999999998543
Q ss_pred hhhccccCCCccccCchHHHHHHHHHHHHHhcCCC-cEEEeeCCCC--ceEEEeeccchHHHHHHHHHhhCCCCCC
Q 014714 269 HAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP-QVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFPPNSE 341 (420)
Q Consensus 269 ha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~-~~a~tsgAGP--tv~~i~~~~~~~~~v~~~l~~~f~~~~~ 341 (420)
|..+++.| ---+|+...+++..++ ..|+. ++-+| |||- .++++++.+..++ +.+.+.+.|....+
T Consensus 298 h~~lr~~~---~vS~~eld~lv~~a~~---~~Ga~gGaklt-GaG~GG~~ial~~~~~~~~-~~~~~~~~y~~~~~ 365 (382)
T PRK05101 298 HASMRDDF---EITVPQIDTLVEIVKA---VIGDQGGVRMT-GGGFGGCIVALVPEELVEA-VRQAVAEQYEAKTG 365 (382)
T ss_pred hHHHHhhc---CCCCHhHHHHHHHHHh---ccCCcceEEec-cCCCccEEEEEEcHHHHHH-HHHHHHHHHHHhhC
Confidence 44443322 1124555555555543 12753 34554 7764 5666677666666 88888887765433
No 42
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.77 E-value=4.8e-16 Score=157.71 Aligned_cols=288 Identities=16% Similarity=0.127 Sum_probs=173.5
Q ss_pred EEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCc----------------ccc-
Q 014714 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK----------------EIS- 73 (420)
Q Consensus 11 ~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~----------------~~~- 73 (420)
.++||..+-|+ |.+-.- -|++..|.++++ .+++++++..++. ..++..+.. ...
T Consensus 2 ~~~APGKl~L~---GEhavv--~~G~pAl~~aI~---~~~~v~i~~~~~~-~~~i~s~~~~~~~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01220 2 VVHAPGKLFVA---GEYAVV--EPGNPAILVAVD---RFVTVTVEDADGA-ADVIISSDLGPQPVGWRRHDGRLVVRDPD 72 (358)
T ss_pred eeecceeEEEe---eeEEEe--cCCCeEEEEEEc---CcEEEEEEeCCCC-ceEEEecCCCCCceEEEecCCceeecccc
Confidence 46788888886 544433 267889999999 5777777654421 112211110 000
Q ss_pred --CCcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCc----cccccchHHHHHHHHHHHHHhCCC
Q 014714 74 --LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA----AGLASSAAGFACLVFSLAKLMNLK 147 (420)
Q Consensus 74 --~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a----aGLGSSAA~~aA~v~Al~~l~~l~ 147 (420)
...+.+..+++.+++.+...+ ....++++.+.+++|.+ +|||||||..+|++.|++++|+.+
T Consensus 73 ~~~~~~~v~~~i~~~~~~~~~~~------------~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~ 140 (358)
T TIGR01220 73 ARSALAYVVSAIETVERYAGERN------------QKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLE 140 (358)
T ss_pred cccchHHHHHHHHHHHHHHHhcC------------CCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 012245556666655553211 01236889999999995 699999999999999999999999
Q ss_pred CCHHHHHHHHHhc--------c-CccccccccCeEEEecccCC-----------------CCCCceEEEccCCCCCCCce
Q 014714 148 ENQSQLSAIARQG--------S-GSACRSLFGGFVKWILGKEG-----------------NGSDSLAVQLVDEEHWNDLV 201 (420)
Q Consensus 148 ls~~eL~~iAr~g--------s-Gsa~~sl~GG~V~~~~g~~~-----------------~g~ds~a~~i~~~~~wp~l~ 201 (420)
++.+++.++|..+ | ++...|.|||++.+.+.... +......++++.+ ++++
T Consensus 141 l~~~~l~~lA~~~E~~~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~---~~~~ 217 (358)
T TIGR01220 141 LSNDEIFKLAMLATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAP---KGLT 217 (358)
T ss_pred CCHHHHHHHHHHHHhhhCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCC---CCCE
Confidence 9999999999543 2 25678999999876533110 0000112334321 2344
Q ss_pred EEEEEECCCCCccCchHHhhhhhc---c-chhHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCC
Q 014714 202 IIIAVVSSRQKETSSTTGMRESVE---T-SLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSP 277 (420)
Q Consensus 202 ~vvlvv~~~~k~vsst~~m~~~~~---t-s~~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p 277 (420)
+++ +... ...+|++.++.+.. + .+.++..+++ ....+..+..+|+.+|++.|++++..++..|++.-...
T Consensus 218 l~v--~~tg-~~~~T~~~v~~V~~~~~~~~~~~~~~l~~-~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~-- 291 (358)
T TIGR01220 218 LLI--GWTG-SPASTASLVSDVHRRKWRGSASYQRFLET-STDCVESAITAFETGDITSLQKEIRRNRQELARLDDEV-- 291 (358)
T ss_pred EEE--EeCC-CCcCcHHHHHHHHHHhhcChHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccc--
Confidence 433 3333 23344443332211 1 2334444443 35678889999999999999999988777777653211
Q ss_pred CccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEE--EeeccchHHHHHHHHHh
Q 014714 278 PIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL--IARNRKIATELLQRLLF 334 (420)
Q Consensus 278 ~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~--i~~~~~~~~~v~~~l~~ 334 (420)
++.+.+|...++++..++ .|+ ++.. +|||-.-|+ ++.++...+.+.+++++
T Consensus 292 ~~~vs~~~l~~li~~a~~----~ga-~aKl-sGAGgGg~~ial~~~~~~~~~~~~~~~~ 344 (358)
T TIGR01220 292 GVGIETEKLKALCDAAEA----YGG-AAKP-SGAGGGDCGIAILDAEADITHVRQRWET 344 (358)
T ss_pred CCCcCCHHHHHHHHHHhh----cCc-eecC-CCCCCcCEEEEEeCCchhHHHHHHHHHH
Confidence 334557788888877765 465 3554 588877555 45444433336555554
No 43
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=2.6e-15 Score=150.18 Aligned_cols=291 Identities=20% Similarity=0.232 Sum_probs=184.9
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEE-EcCcc-------------c--
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW-LNGKE-------------I-- 72 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~-lnG~~-------------~-- 72 (420)
..+++||..+.+|.-|-.++.++.+| ++++ +.|++.++..++. ..+++ .|... .
T Consensus 23 ~~~~~aPGRvNLIGEHtDYn~G~VlP------~Ain---~~t~v~v~~r~d~-~v~l~s~n~~~~~~~~~~~~d~~~~~~ 92 (390)
T COG0153 23 TVTAFAPGRVNLIGEHTDYNGGFVLP------CAIN---YGTYVAVAKRDDG-KVRLYSANFGNAGDIFFLLLDIAKEKI 92 (390)
T ss_pred ceEecCCceEEeeccceeccCceEEE------EEee---cceEEEEEEccCc-eEEEEeCCCccccceeecchhhccccc
Confidence 47899999999998777777666555 6687 6777777776532 11121 12211 1
Q ss_pred cCCcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHH
Q 014714 73 SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQ 152 (420)
Q Consensus 73 ~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~e 152 (420)
+...+++..++..+++.-.. + .|+.|.+..|||+++||+||||.-+|++.++.++++++++..+
T Consensus 93 ~~W~nYvkgvi~~l~~~g~~--------------~--~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~ 156 (390)
T COG0153 93 DDWANYVKGVIKALQKRGYA--------------F--TGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAE 156 (390)
T ss_pred chhhhhHHHHHHHHHhcCCC--------------c--CCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHH
Confidence 11233444444444443222 2 3899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc----Ccc------cccccc---CeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHH
Q 014714 153 LSAIARQGS----GSA------CRSLFG---GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTG 219 (420)
Q Consensus 153 L~~iAr~gs----Gsa------~~sl~G---G~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~ 219 (420)
|.+|+.+.+ |-. +.+.|| =.+..+... -.++.++ +|...+.++|++...|.-...+.
T Consensus 157 la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~------l~~~~~~----~p~~~~~ivI~ns~vkr~la~se 226 (390)
T COG0153 157 LAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRT------LEYEPVP----FPVGGVSIVIVNSNVKRELADSE 226 (390)
T ss_pred HHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEccc------CceEEec----cCccceEEEEecCCCccccchhH
Confidence 999997765 422 336777 333333221 1134443 24444556666765544333333
Q ss_pred hhh----------hhcc----------------------chhHHHHHhhhc--hHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 014714 220 MRE----------SVET----------------------SLLLQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADS 265 (420)
Q Consensus 220 m~~----------~~~t----------------------s~~~~~~~~~~~--~~~~~~l~~Al~~~D~~~f~~~~~~ds 265 (420)
+.. .+.. .+....|..+++ .+|+.+...||+++|+..||++|+
T Consensus 227 Yn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~--- 303 (390)
T COG0153 227 YNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMN--- 303 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHH---
Confidence 321 1111 011112333321 458889999999999999999984
Q ss_pred hhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCC--CceEEEeeccchHHHHHHHHHhhCCCCCCCC
Q 014714 266 NQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFFPPNSETD 343 (420)
Q Consensus 266 n~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~l~~~f~~~~~~~ 343 (420)
.-|..+++.|- --.|+...+.+.... ..|++++-+| ||| .-++++++.++.++ +.+.+.+.|....+++
T Consensus 304 -~SH~slrddye---vt~pElD~lve~a~~---~~G~~GaRmT-GaGfGGc~IaLv~~~~v~~-~~e~v~~~y~~~~g~k 374 (390)
T COG0153 304 -ESHESLRDDYE---VTCPELDTLVEIALA---AGGAYGARMT-GAGFGGCVIALVPNDDVEA-VAEAVAEEYEKVTGLK 374 (390)
T ss_pred -HHHHHHHhccc---ccchhHHHHHHHHHH---cCCcccceec-CCCCCceEEEEechhhHHH-HHHHHHHhHHhhcCcc
Confidence 55787877652 224566666665543 3576766666 665 45667778888777 9999998887776554
Q ss_pred cCcc
Q 014714 344 LNSY 347 (420)
Q Consensus 344 ~~~~ 347 (420)
...|
T Consensus 375 ~~~y 378 (390)
T COG0153 375 AAFY 378 (390)
T ss_pred ccEE
Confidence 4433
No 44
>PLN02677 mevalonate kinase
Probab=99.62 E-value=2e-13 Score=139.41 Aligned_cols=272 Identities=17% Similarity=0.208 Sum_probs=157.8
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCC-CcceEEEcCcccc--------------
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF-DQDRMWLNGKEIS-------------- 73 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~-~~d~i~lnG~~~~-------------- 73 (420)
.+.++||..+-++ |.+-.-+ +...|.++++ +|++++++..+.. ....+.++-....
T Consensus 2 ~i~v~apgk~~l~---Geh~~~~---g~~a~~~ai~---~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~ 72 (387)
T PLN02677 2 EVKARAPGKIILA---GEHAVVH---GSTAVAAAID---LYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEAL 72 (387)
T ss_pred ceEEeCCccEEEe---eeeeeec---CCeeeeeEee---ceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhh
Confidence 4678899999886 6555444 3558999998 8999988753210 1233332111100
Q ss_pred ---------CCcchHHHHHHHHHHHccccccccccccccccc-----------cccccEEEEEecCCCCccccccchHHH
Q 014714 74 ---------LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKD-----------WQKLHLHIASFNNFPTAAGLASSAAGF 133 (420)
Q Consensus 74 ---------~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~-----------~~~~~v~I~s~nniP~aaGLGSSAA~~ 133 (420)
.........++.+.++.......+ +....... ....+++|.+++++|+++|||||||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~-~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~ 151 (387)
T PLN02677 73 PDLGTPCPSTPTSCSEETLKSIAALVEEQNIPE-AKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFC 151 (387)
T ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCcc-hhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHH
Confidence 001123334455555543210000 00000000 002357899999999999999999999
Q ss_pred HHHHHHHHHHhC-CCC----------CH---HHHHHHHHhc--------cC-ccccccccCeEEEecccCCCCCCceEEE
Q 014714 134 ACLVFSLAKLMN-LKE----------NQ---SQLSAIARQG--------SG-SACRSLFGGFVKWILGKEGNGSDSLAVQ 190 (420)
Q Consensus 134 aA~v~Al~~l~~-l~l----------s~---~eL~~iAr~g--------sG-sa~~sl~GG~V~~~~g~~~~g~ds~a~~ 190 (420)
+|++.|++.+++ +++ +. +++.++|..+ || +.+-|.|||++.+..+. ..+
T Consensus 152 Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~s~~Gg~I~f~~~~--------~~~ 223 (387)
T PLN02677 152 VALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSGE--------LTR 223 (387)
T ss_pred HHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCeEEEcCCC--------cee
Confidence 999999999998 333 23 4666667443 33 44678999998765542 234
Q ss_pred ccCCCCCCCceEEEEEECCCCCccCchHHhhhhhcc-----chhHHHHHhhhchHHHHHHHHHHHc---------CCHHH
Q 014714 191 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET-----SLLLQHRAKEVVPKRIVQMEEAIQN---------HDFSS 256 (420)
Q Consensus 191 i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~t-----s~~~~~~~~~~~~~~~~~l~~Al~~---------~D~~~ 256 (420)
+... +++++ +|.+.. ...+|..+..-+.. ...++..++. ....+.++..+|.+ +|++.
T Consensus 224 l~~~---~~l~l--lv~dTg--v~~sT~~lV~~V~~~~~~~p~~~~~il~~-~~~i~~~a~~al~~~~~~~~~~~~~~~~ 295 (387)
T PLN02677 224 LQSN---MPLKM--LITNTR--VGRNTKALVAGVSERALRHPDAMKSVFNA-VDSISEELATIIQSPAEDELSITEKEEK 295 (387)
T ss_pred cCCC---CCceE--EEEECC--CCCcHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhccccccccccchHHH
Confidence 4321 34444 344543 33455555443321 1223333333 36677888899887 57999
Q ss_pred HHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEee
Q 014714 257 FAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIAR 320 (420)
Q Consensus 257 f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~ 320 (420)
|+++|..++..|.+.... .|....+++..++ .|. ++..| |||-.-++|+.
T Consensus 296 Lg~lm~~N~~LL~~LGVS--------~~~le~iv~~a~~----~~~-~AKlT-GAGgGGC~IaL 345 (387)
T PLN02677 296 LKELMEMNQGLLQCMGVS--------HSSIETVLRTTLK----YKL-VSKLT-GAGGGGCVLTL 345 (387)
T ss_pred HHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHH----cCC-ccccc-cCCCCCEEEEE
Confidence 999998887777766543 3455555555543 343 35555 99877666543
No 45
>PLN02521 galactokinase
Probab=99.61 E-value=6.4e-13 Score=139.76 Aligned_cols=142 Identities=18% Similarity=0.294 Sum_probs=95.0
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEE---cCcc----cc--------C
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL---NGKE----IS--------L 74 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~l---nG~~----~~--------~ 74 (420)
..++||..+-|| |.+-+-+.. ..|.++|+ .++++.+...++ .+++.+ +... .+ .
T Consensus 49 ~~~~APGRVnLi---GEHtDy~gg---~vLp~AI~---~~~~v~~~~~~~--~~~i~i~s~~~~~~~~~~~~~~~~~~~~ 117 (497)
T PLN02521 49 LFARSPGRVNLI---GEHIDYEGY---SVLPMAIR---QDTIVAIRRAEG--SKKLRIANVNDKYTTCTFPADPDQEVDL 117 (497)
T ss_pred EEEECCceEEEe---ccceeecCC---eEEEEEEc---CcEEEEEEEcCC--CCEEEEEECCCCCCceeeecCccccccc
Confidence 457899999997 555444443 48889998 566666665432 123332 1110 00 0
Q ss_pred ----CcchH----HHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCC
Q 014714 75 ----GGGRY----QNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNL 146 (420)
Q Consensus 75 ----~~~r~----~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l 146 (420)
+.+.+ ..++..+++..... . ...+++|.++++||.++|||||||..+|++.|++++++.
T Consensus 118 ~~~~W~nYv~~~~~gv~~~l~~~~~~~---------~----~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~ 184 (497)
T PLN02521 118 ANHKWGNYFICGYKGVFEFLKSKGVDV---------G----PPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGL 184 (497)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcccc---------C----CCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 11223 23444444332110 0 124899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccC---------cccccccc--CeEEE
Q 014714 147 KENQSQLSAIARQGSG---------SACRSLFG--GFVKW 175 (420)
Q Consensus 147 ~ls~~eL~~iAr~gsG---------sa~~sl~G--G~V~~ 175 (420)
+++.+++.++|.+++. +...|++| |.++.
T Consensus 185 ~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~ 224 (497)
T PLN02521 185 NFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKL 224 (497)
T ss_pred CCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEE
Confidence 9999999999987754 23568898 77654
No 46
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.61 E-value=1.4e-13 Score=152.51 Aligned_cols=210 Identities=17% Similarity=0.127 Sum_probs=130.7
Q ss_pred ccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc----cC-----ccccccccCeEEEecccC
Q 014714 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG----SG-----SACRSLFGGFVKWILGKE 180 (420)
Q Consensus 110 ~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~g----sG-----sa~~sl~GG~V~~~~g~~ 180 (420)
.+++|.+.++||.++|||||||.++|++.|++++++.+++.+++.++|..+ .| +...+.|||++....+..
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i~~~~~ 804 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQTGAG 804 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCeEEEEecCC
Confidence 478999999999999999999999999999999999999999999999643 22 346689999987654431
Q ss_pred CCCCCceEEEccCCCCC-CCceEEEEEECCCCCccCchHHhh-hhh----ccchhHHHHHhhhchHHHHHHHHHHHcCCH
Q 014714 181 GNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMR-ESV----ETSLLLQHRAKEVVPKRIVQMEEAIQNHDF 254 (420)
Q Consensus 181 ~~g~ds~a~~i~~~~~w-p~l~~vvlvv~~~~k~vsst~~m~-~~~----~ts~~~~~~~~~~~~~~~~~l~~Al~~~D~ 254 (420)
.+. .....+++....+ +++...++++..+. ..+|..+. ..+ ...+.+...++. ..+.+..+..||+++|+
T Consensus 805 ~~~-~~~v~~L~~~~~~~~eLe~~LlL~yTGi--tR~T~~iV~~Vv~~~~~~~~~~~~~l~~-ig~La~ea~~ALe~gD~ 880 (974)
T PRK13412 805 FAQ-SPLVRWLPDSLFTQPEYRDCHLLYYTGI--TRTAKGILAEIVRSMFLNSTAHLQLLHE-MKAHALDMYEAIQRGEF 880 (974)
T ss_pred ccc-CcceeecCcchhhhhhccCcEEEEECCC--eeeHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHHHHcCCH
Confidence 111 1122334321111 22322233444442 23333322 111 112222223333 35567889999999999
Q ss_pred HHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEE--EeeccchHHHHHHHH
Q 014714 255 SSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL--IARNRKIATELLQRL 332 (420)
Q Consensus 255 ~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~--i~~~~~~~~~v~~~l 332 (420)
+.||++|......+++.. ++ --+|...++++.++ .|+.++..| |||-.-|+ ++++.+.++++.+++
T Consensus 881 ~~LG~LMn~~w~ll~~L~----~G--VSnp~LD~Li~~A~-----~gAlGaKLT-GAGGGGcvI~Lak~~~~a~~I~~~L 948 (974)
T PRK13412 881 EEFGRLVGKTWEQNKALD----SG--TNPAAVEAIIELIK-----DYTLGYKLP-GAGGGGYLYMVAKDPGAAERIRKIL 948 (974)
T ss_pred HHHHHHHHHHHHHHHhcc----CC--CCCHHHHHHHHHHH-----cCCcEEEec-ccCcccEEEEEECChhhHHHHHHHH
Confidence 999999876655665542 11 12466666666663 267756655 88877655 454444444366666
Q ss_pred Hhh
Q 014714 333 LFF 335 (420)
Q Consensus 333 ~~~ 335 (420)
.+.
T Consensus 949 ~~~ 951 (974)
T PRK13412 949 TEN 951 (974)
T ss_pred Hhc
Confidence 553
No 47
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.58 E-value=1.3e-14 Score=137.00 Aligned_cols=205 Identities=18% Similarity=0.154 Sum_probs=144.3
Q ss_pred cEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHH----H-------------------hc-------
Q 014714 111 HLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIA----R-------------------QG------- 160 (420)
Q Consensus 111 ~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iA----r-------------------~g------- 160 (420)
.-++.+.|-||.++|+|||++...|.+...|+..++.++...+.... | .+
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~ 173 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKV 173 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhh
Confidence 45678899999999999999999999999999988887754333211 1 11
Q ss_pred cC----ccccccccCeEEEecccCCCCCCceEEEccCCCCC-CCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHh
Q 014714 161 SG----SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 235 (420)
Q Consensus 161 sG----sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~w-p~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~ 235 (420)
+| +..+.+.|||+....-++.|=. ...++ .| ++++++ +|+|+. + .+|..||..++|+..+.+.+-
T Consensus 174 ~~~~ad~ilp~~~gg~~li~~lpP~dlg--~~~r~----pw~~~lk~i-~viP~F--e-l~T~k~R~vLPt~yp~~d~V~ 243 (355)
T KOG1537|consen 174 SGYHADNILPAIMGGFVLIRNLPPLDLG--KPLRF----PWDKDLKFI-LVIPDF--E-LPTKKMRAVLPTEYPMVDHVW 243 (355)
T ss_pred cCCCHHHhcccccCCeeeecCCCccccc--ccccC----CCCccceEE-EEeccc--c-ccchhhhhhcCccccceeeee
Confidence 11 2356788888865443321100 12233 36 567765 555653 3 456669999999766665555
Q ss_pred hhchHHHHHHHHHHHcC-CHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCc
Q 014714 236 EVVPKRIVQMEEAIQNH-DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPN 314 (420)
Q Consensus 236 ~~~~~~~~~l~~Al~~~-D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPt 314 (420)
+ .+|+..+..|+.++ |-..++...|+| ..|++ |+..|+|...+|...+... -.-|.. ....||||||
T Consensus 244 N--lqrlA~LttAl~~~p~n~~L~y~~m~D--kvhqP------yRa~LIPGl~~il~~~~p~-t~pGl~-GiclSGAGPT 311 (355)
T KOG1537|consen 244 N--LQRLAALTTALLEGPDNVMLGYALMSD--KVHQP------YRAPLIPGLEAILKAALPA-TYPGLF-GICLSGAGPT 311 (355)
T ss_pred c--HHHHHHHHHHHhcCCCchhhhhhhhhc--cccCc------cccccCccHHHHHHhhCcc-cCCcee-eEEecCCCCe
Confidence 4 88999999999998 766777767775 88875 5566889999998888652 123777 4456799999
Q ss_pred eEEEeeccchHHHHHHHHHhhCCCC
Q 014714 315 AVLIARNRKIATELLQRLLFFFPPN 339 (420)
Q Consensus 315 v~~i~~~~~~~~~v~~~l~~~f~~~ 339 (420)
+.++.. ++-++ +.+.|.+.|.+.
T Consensus 312 ~lAlat-enf~e-I~~~mv~~F~K~ 334 (355)
T KOG1537|consen 312 ALALAT-ENFQE-IGEKMVEAFWKV 334 (355)
T ss_pred eEEEec-CcHHH-HHHHHHHHHHhh
Confidence 999987 56667 999999998654
No 48
>PLN02865 galactokinase
Probab=99.58 E-value=1.5e-12 Score=134.24 Aligned_cols=289 Identities=14% Similarity=0.076 Sum_probs=169.4
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCC---------CCc-ceEEEcCccc-------
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS---------FDQ-DRMWLNGKEI------- 72 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~---------~~~-d~i~lnG~~~------- 72 (420)
..++||..|.+|.-|-.++.++ .|.++|+ ..+.+.+...++ +.+ .++.++....
T Consensus 31 ~~~~APGRVnlIGEHtDYngG~------VLp~AI~---~~~~va~~~~~~~~i~v~s~~~~~~~~~~~~~~~~~~~~~~~ 101 (423)
T PLN02865 31 RVVVSPYRICPLGAHIDHQGGT------VSAMTIN---KGILLGFVPSGDPEVLLRSAQFEGEVRFRVDEIQHPIANVSS 101 (423)
T ss_pred eEEEcCcceecccccccCCCCe------EEeEEee---ccEEEEEEECCCCEEEEEECCCCCceEEeccccccccccccc
Confidence 4588999999996666565444 5557777 344444443321 211 1222221100
Q ss_pred -----cCCcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCC-CCccccccchHHHHHHHHHHHHHhCC
Q 014714 73 -----SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF-PTAAGLASSAAGFACLVFSLAKLMNL 146 (420)
Q Consensus 73 -----~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nni-P~aaGLGSSAA~~aA~v~Al~~l~~l 146 (420)
..+.+.+..++..+++.-.. ...++.+.+..++ |.++||+||||..+|++.|++.++++
T Consensus 102 ~~~~~~~W~~Yv~gv~~~l~~~g~~---------------~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~ 166 (423)
T PLN02865 102 DSKEESNWGDYARGAVYALQSRGHA---------------LSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNL 166 (423)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC---------------CCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCC
Confidence 00123555566666543211 1258899999999 68999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcc----Ccc---------ccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCc
Q 014714 147 KENQSQLSAIARQGS----GSA---------CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKE 213 (420)
Q Consensus 147 ~ls~~eL~~iAr~gs----Gsa---------~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~ 213 (420)
+++.+++.++|.+.+ |.. ..+-.|+++..+.... +...++++.+.+-++-.+.+++++...+.
T Consensus 167 ~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l----~~~~vpl~~~~~~~~~~~~ivv~~s~~~h 242 (423)
T PLN02865 167 TVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTL----DHKLVSLQFQQPGGEKPFKILLAFSGLRH 242 (423)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEccCC----CcceeecCcccccCCCCeEEEEEeCCCch
Confidence 999999999997654 322 2356778876554321 11123333111000112333444433222
Q ss_pred cCc-hHHh-------h---hhhc-------------c---c----------hhHHHHHhhhc--hHHHHHHHHHHHcCCH
Q 014714 214 TSS-TTGM-------R---ESVE-------------T---S----------LLLQHRAKEVV--PKRIVQMEEAIQNHDF 254 (420)
Q Consensus 214 vss-t~~m-------~---~~~~-------------t---s----------~~~~~~~~~~~--~~~~~~l~~Al~~~D~ 254 (420)
..+ +..+ + +.+. . . +.+..|..+++ ..|+.+...+|+++|+
T Consensus 243 ~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~ 322 (423)
T PLN02865 243 ALTNKPGYNLRVSECQEAARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNL 322 (423)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHhcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 212 1111 1 1110 0 0 11122333332 3478999999999999
Q ss_pred HHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCC--CCceEEEeeccchHHHHHHHH
Q 014714 255 SSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDA--GPNAVLIARNRKIATELLQRL 332 (420)
Q Consensus 255 ~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgA--GPtv~~i~~~~~~~~~v~~~l 332 (420)
+.|+++| +..|..+++.|- --.|+...+++...+ ..|++++-+| |+ |..++++++++..++ +.+.+
T Consensus 323 ~~~g~lm----~~sh~Slrd~ye---vS~~eld~lv~~a~~---~~Ga~GaR~t-GgGfGGc~vaLv~~~~~~~-~~~~v 390 (423)
T PLN02865 323 EEFGKLI----SASGLSSIENYE---CGCEPLIQLYEILLK---APGVYGARFS-GAGFRGCCVAFVDAEMAEE-AASFV 390 (423)
T ss_pred HHHHHHH----HHhhhhHHhhcc---CCcHHHHHHHHHHHh---cCCCeEEEEe-ccCCccEEEEEEchhHHHH-HHHHH
Confidence 9999987 467877776542 123555555555543 2488866665 55 577888888888777 88888
Q ss_pred HhhCCC
Q 014714 333 LFFFPP 338 (420)
Q Consensus 333 ~~~f~~ 338 (420)
.+.|..
T Consensus 391 ~~~Y~~ 396 (423)
T PLN02865 391 RDEYEK 396 (423)
T ss_pred HHHHHh
Confidence 887764
No 49
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.39 E-value=9.7e-11 Score=112.93 Aligned_cols=282 Identities=17% Similarity=0.116 Sum_probs=160.7
Q ss_pred EEEecceeEEEeeeccccCC-C-CCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEc--Ccc-----ccCCc-chHH
Q 014714 11 TAQTPTNIAVIKYWGKRDET-L-ILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLN--GKE-----ISLGG-GRYQ 80 (420)
Q Consensus 11 ~~~Ap~nIa~ikywGkrd~~-~-~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~ln--G~~-----~~~~~-~r~~ 80 (420)
..+||..|.+. -|--|-. | .--+--.++.|+| .|++.++.. .+ .++|.++ -.+ ..... +.+.
T Consensus 3 i~raPLRItfg--GGGTDvepy~~k~GGaVlnatId---ky~y~~i~~--~~-d~~I~~~~~~~~~v~~~~~~~h~~~~~ 74 (333)
T COG2605 3 ISRAPLRITFG--GGGTDVEPYCSKHGGAVLNATID---KYIYVTIEK--GF-DDEIRVRYDRTEFVKSYLENEHKPLVV 74 (333)
T ss_pred ccccceEEEec--CCCcCchHHHHhcCCEEEEeeee---eEEEEEEcc--CC-CceEEEecchHHhhhhhHhhcCchHHH
Confidence 45599999985 2333311 0 0001236789998 577777643 33 4566654 111 11111 2233
Q ss_pred HHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 014714 81 NCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG 160 (420)
Q Consensus 81 ~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~g 160 (420)
.|++. ..+...+ ...++|....++|.++|||||||..+|++-|++.+-|..+++.+|++.|-..
T Consensus 75 ~~l~r--~~l~~~g--------------~~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~I 138 (333)
T COG2605 75 ESLKR--DFLEFNG--------------GTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEI 138 (333)
T ss_pred HHHHH--HHHhhcC--------------CCceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34332 1333211 1238899999999999999999999999999999999999999999999655
Q ss_pred cC----------ccccccccCeEEEecccCCCCCCceEEEccCCCCC--CCc--eEEEEEECCCCCccCchHHhhhhhcc
Q 014714 161 SG----------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW--NDL--VIIIAVVSSRQKETSSTTGMRESVET 226 (420)
Q Consensus 161 sG----------sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~w--p~l--~~vvlvv~~~~k~vsst~~m~~~~~t 226 (420)
+. +.-.+.||||-..+-.. +| +.+..++.. ..| .++ +++++. ......++.-.+.+ +..
T Consensus 139 ER~~l~~~gG~QDqYaaA~GGFnfMEf~~--~~-~V~v~pL~i-~~e~~~Ele~~~lL~y--TGi~R~Ss~V~~dQ-~~~ 211 (333)
T COG2605 139 EREDLKIVGGKQDQYAAAFGGFNFMEFRG--NG-EVVVNPLRI-NRERTAELEARLLLYY--TGITRQSSEVIEDQ-VRN 211 (333)
T ss_pred HHHHhccccccccHHHHHhCCceEEEEcC--CC-cEEEeeccc-chhHHHHHHhceEEEE--eccccchhHHHHHH-HHH
Confidence 42 33446899996543221 22 123333332 122 223 343332 33233333322221 111
Q ss_pred chhHH----HHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCC
Q 014714 227 SLLLQ----HRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGS 302 (420)
Q Consensus 227 s~~~~----~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga 302 (420)
..--+ +...+ ..+.+.+|..++..+|+..|++++.+. .+.....-. . .+...|+.+.+.+.+.|+
T Consensus 212 ~~~~~~~~~e~~~~-mk~~A~~~~~al~~nd~~~f~~~l~~g-W~~KK~ls~-----~----ISN~~IDriy~~A~~~GA 280 (333)
T COG2605 212 VVDGDEETLEALHE-MKALAYEMKDALVRNDIPEFGQILDRG-WEAKKKLSS-----R----ISNDAIDRIYELALKNGA 280 (333)
T ss_pred hhcccHHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHhH-HHhhhhhcc-----C----cCcHHHHHHHHHHHhcCc
Confidence 11010 01111 345677889999999999999987543 233322211 1 234445555555556899
Q ss_pred CcEEEeeCCCCceEEE--eeccchHHHHHHHHHhhC
Q 014714 303 PQVAYTFDAGPNAVLI--ARNRKIATELLQRLLFFF 336 (420)
Q Consensus 303 ~~~a~tsgAGPtv~~i--~~~~~~~~~v~~~l~~~f 336 (420)
+++. ++|||..-|++ |+..+..+ +.++|.+.-
T Consensus 281 ~~gK-l~GaG~gGFllf~~~p~k~~~-l~r~l~~~~ 314 (333)
T COG2605 281 YGGK-LSGAGGGGFLLFFCDPSKRNE-LARALEKEQ 314 (333)
T ss_pred hhce-eeccCCccEEEEEeCccchHH-HHHHHHHhc
Confidence 8555 55999886665 45555556 777777653
No 50
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.38 E-value=1.2e-10 Score=111.64 Aligned_cols=243 Identities=19% Similarity=0.200 Sum_probs=151.7
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeE--eeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSIS--VTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI 86 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSis--vtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~ 86 (420)
.++.++|.+|.-+=+-=.+++.. ...|++ ++|+ -.++++|+..+ +..+++||++.+.. -...|++
T Consensus 2 ~~~~fvP~hITgfF~pv~~~~p~---~SGSiGaGv~l~---~gv~v~v~~~~---~~~v~~Ng~~~d~~--~~~~v~e-- 68 (283)
T COG1829 2 AVRLFVPGHITGFFVPVIGKDPL---KSGSIGAGVALE---RGVTVEVRFGE---GTGVRLNGKKIDLP--ITRKVIE-- 68 (283)
T ss_pred CceEeccceeEEEEEeccCCCCc---cCCCcceeEEec---CceeEEEEecC---CceEEECCeeccch--hHHHHHH--
Confidence 36789999999874334555554 356775 6777 46777777765 46899999876552 1223443
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------h
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR-------Q 159 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr-------~ 159 (420)
..+ ..++.|+++..+|+++|+|=|+|++.+.+.|+|..++++ .++..++|. .
T Consensus 69 --~L~-----------------~~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gt 127 (283)
T COG1829 69 --KLG-----------------PDGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENGT 127 (283)
T ss_pred --HhC-----------------ccCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcCC
Confidence 222 234667788899999999999999999999999999886 677888884 3
Q ss_pred ccCccccccccCeEEEe-cccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhc
Q 014714 160 GSGSACRSLFGGFVKWI-LGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVV 238 (420)
Q Consensus 160 gsGsa~~sl~GG~V~~~-~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~ 238 (420)
|-|++..-.+||+|+.. .|.+ ..-..++++ ||.++++.. +.. .++|++. -++.. ..+++
T Consensus 128 GLGDVvAq~~GGlViR~~pG~P---g~~~vd~Ip----~~~~~V~~~--~~g--~l~T~~v-----i~~~~-~~~i~--- 187 (283)
T COG1829 128 GLGDVVAQYTGGLVIRVKPGGP---GEGEVDRIP----VPGLRVITI--SLG--ELSTKSV-----ITDEV-VRKIN--- 187 (283)
T ss_pred CchHHHHHhcCcEEEEecCCCC---CeEEEEEee----cCCceEEEE--Ecc--cccHHHh-----hhhHH-HHHHH---
Confidence 45788899999988642 2221 112355665 455665543 332 3444332 11221 12222
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEE
Q 014714 239 PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLI 318 (420)
Q Consensus 239 ~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i 318 (420)
..-...+.+-+++-+++.|.+.. ++|-... -.+++....+++.++. .|..+++ +.-=|=|+|++
T Consensus 188 ~~g~~~l~ellk~Ptle~f~~~a----~~FA~~~-------Gl~~~~v~~~~~~~~~----~g~l~as-~~mlg~tVFa~ 251 (283)
T COG1829 188 EAGKRALAELLKNPTLENFMEEA----REFARRT-------GLMSEEVKEAAEALHS----VGGLGAS-MAMLGVTVFAL 251 (283)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH----HHHHHHh-------CcCHHHHHHHHHHhhh----cCchhHh-HHhhCcEEEEe
Confidence 33445666777889999998865 3443211 1222344444444442 3554344 34589999999
Q ss_pred eec
Q 014714 319 ARN 321 (420)
Q Consensus 319 ~~~ 321 (420)
.++
T Consensus 252 ~~~ 254 (283)
T COG1829 252 SPE 254 (283)
T ss_pred ccc
Confidence 843
No 51
>PTZ00290 galactokinase; Provisional
Probab=99.34 E-value=1.1e-09 Score=114.35 Aligned_cols=289 Identities=11% Similarity=0.046 Sum_probs=152.4
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEE----------cCccccC----C
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL----------NGKEISL----G 75 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~l----------nG~~~~~----~ 75 (420)
+.++||..+.+|.-|-.++.++.+ .++|+ .++++.+...+....+.+.+ +...... +
T Consensus 38 ~~~~APGRVnLIGEHtDYngG~VL------p~AId---~~~~va~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~W 108 (468)
T PTZ00290 38 LFTFAPGRVNFIGEHVDYMGGYVC------PAAVL---EGCHILVGRVKHFCDHKLRFATETDEHFVLDHLGGAKHNKAW 108 (468)
T ss_pred EEEeccceeeecccccccCCCeee------ecccc---CcEEEEEeecCCCCCCeEEEEECCCceeecCcccccCCcccH
Confidence 678999999999766666655544 56677 45555543321111222222 1110000 1
Q ss_pred cchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCC---------
Q 014714 76 GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNL--------- 146 (420)
Q Consensus 76 ~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l--------- 146 (420)
.+.+..++..+.+..+.. +.++ ...++.+.+..++|.++||+||||..+|++.|++.++++
T Consensus 109 ~nYv~gv~~~~l~~~g~~--------~~~~--~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~ 178 (468)
T PTZ00290 109 TTFVRGAATLRLNRLGVA--------IDAP--SLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSP 178 (468)
T ss_pred HHHHHHHHHHHHHHhCCC--------cccC--CCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 224555555433333320 0000 124889999999999999999999999999999999743
Q ss_pred --------CCCH---HHHHHHHHhc----cCcc------cccccc---CeEEEecccCCCCCCceEEEccCCCCC--CCc
Q 014714 147 --------KENQ---SQLSAIARQG----SGSA------CRSLFG---GFVKWILGKEGNGSDSLAVQLVDEEHW--NDL 200 (420)
Q Consensus 147 --------~ls~---~eL~~iAr~g----sGsa------~~sl~G---G~V~~~~g~~~~g~ds~a~~i~~~~~w--p~l 200 (420)
.++. .+|+.++.+. -|.. ..|.+| .....+... -..+.++.. .. +++
T Consensus 179 ~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~------l~~~~v~l~-~~~~~~~ 251 (468)
T PTZ00290 179 GRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKS------LTFESHDMT-PLLGDGA 251 (468)
T ss_pred ccccccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCC------CeEEEeccC-CCCCCCc
Confidence 1343 5566666542 2333 336666 444444321 112333211 01 233
Q ss_pred eEEEEEECCCCCcc--Cc--------hHHhh---hhhcc-------------------------------------chhH
Q 014714 201 VIIIAVVSSRQKET--SS--------TTGMR---ESVET-------------------------------------SLLL 230 (420)
Q Consensus 201 ~~vvlvv~~~~k~v--ss--------t~~m~---~~~~t-------------------------------------s~~~ 230 (420)
.+ +|++...+.- .| +.+++ +.+.. .+..
T Consensus 252 ~~--vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (468)
T PTZ00290 252 CF--LLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGE 329 (468)
T ss_pred EE--EEEeCCCcchhccccchhhHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHhhhcCCHHH
Confidence 33 3444332221 11 01111 11110 0011
Q ss_pred HHHHhhhc--hHHHHHHHHHHH-------cCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcC
Q 014714 231 QHRAKEVV--PKRIVQMEEAIQ-------NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG 301 (420)
Q Consensus 231 ~~~~~~~~--~~~~~~l~~Al~-------~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~G 301 (420)
..|..+++ ..|+.+.+.++. ++|++.|+++|. .-|..+++.|- -.+|+...+++.+. ...|
T Consensus 330 ~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~----~sh~sL~~~~~---vS~~elD~lv~~~~---~~~G 399 (468)
T PTZ00290 330 FERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILN----AGHQGMRDLMK---ITTPELDFIHELIN---EEKG 399 (468)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHH----HHHHHHHHhcC---CCcHHHHHHHHHHH---HhCC
Confidence 11333332 336777777774 566999999984 44655665431 23455555555433 2368
Q ss_pred CCcEEEeeCCCCc--eEEEeeccchHHHHHHHHHhhCCC
Q 014714 302 SPQVAYTFDAGPN--AVLIARNRKIATELLQRLLFFFPP 338 (420)
Q Consensus 302 a~~~a~tsgAGPt--v~~i~~~~~~~~~v~~~l~~~f~~ 338 (420)
++++-+| |+|-. ++++++.+..++ +.+.+.+.|..
T Consensus 400 ~~GaRlT-GaG~GGc~i~Lv~~~~~~~-~~~~v~~~y~~ 436 (468)
T PTZ00290 400 VAGGRMM-GGGFGGCIILLLKKNAVDR-VVAHVREKFKA 436 (468)
T ss_pred CcEEEEe-cCCCceEEEEEechhhHHH-HHHHHHHHHHH
Confidence 8877766 77754 445555666666 88888877744
No 52
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.22 E-value=5.7e-09 Score=108.51 Aligned_cols=226 Identities=16% Similarity=0.149 Sum_probs=125.6
Q ss_pred cchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCC-----------------C--------Cccccccch
Q 014714 76 GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF-----------------P--------TAAGLASSA 130 (420)
Q Consensus 76 ~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nni-----------------P--------~aaGLGSSA 130 (420)
++-++.++..+..+...... ++..+....+.|.+++++ + ...||||||
T Consensus 87 n~fv~~ai~~~~~y~~~~~~-------~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSA 159 (454)
T TIGR01219 87 NPFIQYAIAAVHLYFDKESL-------HKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSA 159 (454)
T ss_pred ChHHHHHHHHHHHHHHhccc-------cccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHH
Confidence 44566777777666654210 000133567788888862 1 258999999
Q ss_pred HHHHHHHHHHHHHhCCCC-------------CHHHHHHHHH------hc---cC-ccccccccCeEEEecccCC------
Q 014714 131 AGFACLVFSLAKLMNLKE-------------NQSQLSAIAR------QG---SG-SACRSLFGGFVKWILGKEG------ 181 (420)
Q Consensus 131 A~~aA~v~Al~~l~~l~l-------------s~~eL~~iAr------~g---sG-sa~~sl~GG~V~~~~g~~~------ 181 (420)
|..+|++.||..+|+..+ +.+.+.++|. +| || +.+.|.|||+ ++.+..+.
T Consensus 160 AvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGgi-~Y~rfd~~~l~~~~ 238 (454)
T TIGR01219 160 AMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQ-RYRRFSPELISFLQ 238 (454)
T ss_pred HHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCce-EEEecChhhhhhhh
Confidence 999999999999999887 6677777773 33 44 4578999995 44442110
Q ss_pred --CCCCceEEEccC--CCCCC----------CceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHHH
Q 014714 182 --NGSDSLAVQLVD--EEHWN----------DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247 (420)
Q Consensus 182 --~g~ds~a~~i~~--~~~wp----------~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~ 247 (420)
.+...+...+.. ...|| .+++++ ... +.-++|..|...+.. .++..... ....++.|..
T Consensus 239 ~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~~l~Llv--gdt--g~~ssT~~lV~~V~~--~~~~~p~~-s~~i~~~l~~ 311 (454)
T TIGR01219 239 VAITGLPLNEVLGTIVKGKWDNKRTEFSLPPLMNLFM--GDP--GGGSSTPSMVGKVKK--WQMSDPEE-SRENWQNLSD 311 (454)
T ss_pred ccccccchhhhHHHHhccCCCCceeeccCCCCCEEEE--EcC--CCCcCcHHHHHHHHH--HHHHCHHH-HHHHHHHHHH
Confidence 000000000000 01232 345433 232 234677777654421 11111110 1112222222
Q ss_pred H----------------------------HHcC--------CHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHH
Q 014714 248 A----------------------------IQNH--------DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 291 (420)
Q Consensus 248 A----------------------------l~~~--------D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~ 291 (420)
+ +..+ |+..+.+.+......|..+...+ +.....|...++++
T Consensus 312 aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~s--gv~IEp~~~t~Lld 389 (454)
T TIGR01219 312 ANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEA--SVDIEPESQTQLLD 389 (454)
T ss_pred HHHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhc--CCcccCHHHHHHHH
Confidence 2 4444 77778887777666665554432 34445688888888
Q ss_pred HHHHHHHhcCCCcEEEeeCCCCc--eEEEeecc
Q 014714 292 YVERWNRSVGSPQVAYTFDAGPN--AVLIARNR 322 (420)
Q Consensus 292 ~v~~~~~~~Ga~~~a~tsgAGPt--v~~i~~~~ 322 (420)
...++ .|++ ++.++|||-- +++|+.++
T Consensus 390 ~~~~~---~Gvl-~a~vpGAGGgDa~~~l~~~~ 418 (454)
T TIGR01219 390 STMSL---EGVL-LAGVPGAGGFDAIFAITLGD 418 (454)
T ss_pred HHhhc---CCee-EeecCCCCccceEEEEecCC
Confidence 88764 4665 4677899865 55565544
No 53
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.20 E-value=6.1e-09 Score=102.73 Aligned_cols=283 Identities=18% Similarity=0.237 Sum_probs=157.3
Q ss_pred EEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCC----cchHHHH----
Q 014714 11 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLG----GGRYQNC---- 82 (420)
Q Consensus 11 ~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~----~~r~~~~---- 82 (420)
.++||..|-+ +|.+...|+-| .+..++| |||+.++..+. .|++.+.=+.+..+ -+++..+
T Consensus 6 ~vsaPGKvIL---fGEHAVVyg~~---AlAaai~---LrTyl~l~~sa---n~~i~l~l~di~~~~~w~l~~~~~~l~~~ 73 (397)
T KOG1511|consen 6 LVSAPGKVIL---FGEHAVVYGRT---ALAAAID---LRTYLRLQTSA---NDRILLQLPDISIEKAWSLADFNGALPEQ 73 (397)
T ss_pred eecCCccEEE---eccceeEECCc---eeEEEee---cceeEEEEecC---CCeEEEecccCCceEEEEhhhhhhhhhhh
Confidence 7899999887 68888888865 8889998 99999986654 34554421111110 0111111
Q ss_pred ---------------HHHHHHHccccccccccccccccc-----------ccccc----EEEEEecCCCCccccccchHH
Q 014714 83 ---------------LKEIRSRACDVEDTEKGIKIEKKD-----------WQKLH----LHIASFNNFPTAAGLASSAAG 132 (420)
Q Consensus 83 ---------------l~~~r~~~~~~~~~~~~~~~~~~~-----------~~~~~----v~I~s~nniP~aaGLGSSAA~ 132 (420)
++.++.+.+..++..... ..-.. ....+ +.+.+.+..|.++|||||||.
T Consensus 74 ~~~~~~~q~p~~~~~~e~~k~l~~l~~~~~~~~-~~~a~~~~lYlf~~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~ 152 (397)
T KOG1511|consen 74 RSTYESVQTPASEVRVELLKQLGGLLENQEKVK-EHLAGLSFLYLFLGLCLRAPGTLPALTVVVDSELPLGAGLGSSAAI 152 (397)
T ss_pred hhhhhccCCcchhhhHHHHHHhhhhhhcchhhh-HHHHHHHHHHHHHHhhhcccCCCcceEEEEeccCCCcCCcchhHHH
Confidence 111122222111110000 00000 00112 678888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCH-----------HHHHHHHHhc--------cC-ccccccccCeEEEecccCCCCCCceEEEcc
Q 014714 133 FACLVFSLAKLMNLKENQ-----------SQLSAIARQG--------SG-SACRSLFGGFVKWILGKEGNGSDSLAVQLV 192 (420)
Q Consensus 133 ~aA~v~Al~~l~~l~ls~-----------~eL~~iAr~g--------sG-sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~ 192 (420)
.+|++.|+..+.|+--++ .-+.+.|-+| || +.+=|.|||...+..|.. .+.+
T Consensus 153 sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg~i~f~kg~~-------~~~L- 224 (397)
T KOG1511|consen 153 SVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGGLISFKKGVE-------IESL- 224 (397)
T ss_pred HHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhhhccCceEEeecCcc-------ceec-
Confidence 999999999988753222 3356677666 33 446699999998877631 2233
Q ss_pred CCCCCCCceEEEEEECCCCCccCchHHhhhhhcc-c----hhHHHHHhhhchHHHHHHHHHHHc----CCHH---HHHHH
Q 014714 193 DEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET-S----LLLQHRAKEVVPKRIVQMEEAIQN----HDFS---SFAQL 260 (420)
Q Consensus 193 ~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~t-s----~~~~~~~~~~~~~~~~~l~~Al~~----~D~~---~f~~~ 260 (420)
.+.|.++++ +++.. --.+|+.+.+.+.. . ..++..++. +.....+....+.+ .++. .+.++
T Consensus 225 --k~~~~L~il--ltnTr--v~RnTk~lVa~Vr~~~~kfPevi~~i~~a-id~is~ea~~il~~e~~~~~~~~Eq~L~eL 297 (397)
T KOG1511|consen 225 --KHLPPLRIL--LTNTR--VPRNTKALVAGVRELLEKFPEVIKAIFDA-IDEISLEAVWILQRENDEFSSPKEQKLEEL 297 (397)
T ss_pred --ccCCCceEE--EEccc--cCccHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhcccccCCCcHHHHHHHH
Confidence 345777754 44542 23455555433321 1 112222222 23344455555552 2333 58888
Q ss_pred HHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEe--eccchHHHHHHHHHhhC
Q 014714 261 TCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIA--RNRKIATELLQRLLFFF 336 (420)
Q Consensus 261 ~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~--~~~~~~~~v~~~l~~~f 336 (420)
+..|+..+.++... .|..+.++.... ..|.. ...| |||-.-+.|+ +..-..+ .+..+++..
T Consensus 298 i~iNq~LL~alGVs--------H~~le~v~~~t~----k~gi~-sKLT-GAGgGGc~itlL~~~~~qe-~i~~~ke~L 360 (397)
T KOG1511|consen 298 IRINQDLLDALGVS--------HPSLELVCTTTR----KLGIH-SKLT-GAGGGGCVITLLKPGTEQE-QIDKWKEEL 360 (397)
T ss_pred HHHhHHHHHHhCCC--------cHHHHHHHHHHH----HhCcc-eecc-cCCCCceEEEEECCCCchH-HHHHHHHHH
Confidence 87777777776653 244555555554 45764 5666 8887655554 3333333 566555544
No 54
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.19 E-value=1.6e-11 Score=94.70 Aligned_cols=59 Identities=34% Similarity=0.497 Sum_probs=53.1
Q ss_pred EEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc---C-----ccccccccC
Q 014714 113 HIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---G-----SACRSLFGG 171 (420)
Q Consensus 113 ~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gs---G-----sa~~sl~GG 171 (420)
+|+++++||.++|||||||.++|++.+++++++++++.++|.+++++++ | +.+.|+|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSGIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHSHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCChhhHHHHHhCc
Confidence 5788999999999999999999999999999999999999999998775 2 347788887
No 55
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.09 E-value=2e-08 Score=95.19 Aligned_cols=254 Identities=17% Similarity=0.141 Sum_probs=150.8
Q ss_pred eeEEEEEecceeEEE-eeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHH
Q 014714 7 VLMVTAQTPTNIAVI-KYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKE 85 (420)
Q Consensus 7 ~~~~~~~Ap~nIa~i-kywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~ 85 (420)
++.+++.+|..-+=+ .=|=+--++ =+|+.++ +++++++...+ .+|+.. ..+...+.+.
T Consensus 11 ~~~~~A~cpAs~GELlQG~~~g~~~-------Lvs~PIa---~~s~v~~~~~s--~~~s~~---------~t~a~~~~e~ 69 (293)
T COG4542 11 VMVISAKCPASCGELLQGSFNGSEK-------LVSFPIA---LFSEVTLFDRS--GKDSVN---------VTPAHKFKEN 69 (293)
T ss_pred CcceeeecccchhhhheeeecCCce-------EEEcchh---hhhheeeeccC--CCcccc---------cchhHHHHHH
Confidence 566777777776532 111011111 2356666 77777763322 123221 1223344444
Q ss_pred HHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccc
Q 014714 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (420)
Q Consensus 86 ~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~ 165 (420)
+..+.+. +.+...++.+.+.++||.+.|||||+|+.+|+++|+++.+|.+++..+|.+++...+.+-
T Consensus 70 ~la~~~~------------~~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPtD- 136 (293)
T COG4542 70 ILARWGV------------TKLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPTD- 136 (293)
T ss_pred HHHHhCc------------cceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCcc-
Confidence 4445443 123456789999999999999999999999999999999999999999999999998654
Q ss_pred cccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHH
Q 014714 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM 245 (420)
Q Consensus 166 ~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l 245 (420)
.-+|-+.++++..+ |. + +......|.+. ++++.. +++-.|..+++-........... + ..+..+..
T Consensus 137 siiF~~~tlFd~r~---g~----~-~~~~g~~PpL~--ilv~e~--~~~v~T~~y~q~~r~e~~~~~~~-e-~~~l~~~v 202 (293)
T COG4542 137 SIIFDKATLFDQRE---GR----V-IEFLGEMPPLH--ILVFEG--KGTVETVDYNQPPRGEKLLAPLA-E-LGNLINLV 202 (293)
T ss_pred ceecccceeehhcc---ch----H-HHhcCCCCceE--EEEEcC--CCceeeeeccCCchhhhhhhhHH-H-HHHHHHHH
Confidence 34677787765432 21 1 11112235554 344443 23333333443111111122211 2 25567788
Q ss_pred HHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeecc
Q 014714 246 EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNR 322 (420)
Q Consensus 246 ~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~ 322 (420)
..|+..+|...+|++..- |-..|+..+. .|...++.+.+++. ++.|+- .+=+|.-+=++++..
T Consensus 203 ~~A~~~~~~~~lG~AAT~-SAv~~Q~~LP--------K~~~~~lL~l~e~~----~~~Gv~-VAHSGtmlGli~D~~ 265 (293)
T COG4542 203 EKALKVGDPKLLGEAATL-SAVKNQDRLP--------KPGLNELLRLVEET----CAIGVI-VAHSGTMLGLIYDRK 265 (293)
T ss_pred HHHHccCCHHHHHHHHHH-HHHhhccccC--------chhHHHHHHHHHHh----cccceE-EeccCceEEeeeccc
Confidence 899999999999997754 3455554442 35677788888764 333232 336777766666644
No 56
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=98.74 E-value=2e-08 Score=80.27 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=59.6
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCC--CCceEEEeecc
Q 014714 245 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDA--GPNAVLIARNR 322 (420)
Q Consensus 245 l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgA--GPtv~~i~~~~ 322 (420)
|++||.++|++.|++++..++.. .... +...++|...++++.+++ .|+. ++.+||| ||++|+|++++
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~--~~~~----~~~~~~~~i~~~~~~~~~----~Ga~-~~~~sGsG~G~~v~~l~~~~ 69 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQEN--EPEN----YREVLTPEIDELKEAAEE----NGAL-GAKMSGSGGGPTVFALCKDE 69 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HHHH----HTTHHHHHHHHHHHHHHH----TTES-EEEEETTSSSSEEEEEESSH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhh--cchH----HHHHcCHHHHHHHHHHHH----CCCC-ceecCCCCCCCeEEEEECCH
Confidence 67899999999999998764332 1100 233456677777777754 6876 6677799 99999999665
Q ss_pred chHHHHHHHHHhhCC
Q 014714 323 KIATELLQRLLFFFP 337 (420)
Q Consensus 323 ~~~~~v~~~l~~~f~ 337 (420)
+..+++.+.+++.|+
T Consensus 70 ~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 70 DDAERVAEALREHYK 84 (85)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCC
Confidence 555559999998875
No 57
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.031 Score=58.39 Aligned_cols=217 Identities=11% Similarity=0.160 Sum_probs=111.8
Q ss_pred cccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHH-----------HHHHHHHhccC--ccccccccCeEEE
Q 014714 109 KLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQS-----------QLSAIARQGSG--SACRSLFGGFVKW 175 (420)
Q Consensus 109 ~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~-----------eL~~iAr~gsG--sa~~sl~GG~V~~ 175 (420)
..+++|...++.|.++|||-|+-.+...++|+.+..+.-...+ .+.+|...|.| +-|..+|-|.-.-
T Consensus 689 ~~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~g 768 (948)
T KOG4644|consen 689 CCGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKG 768 (948)
T ss_pred cCceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhc
Confidence 3589999999999999999999888888888888877543332 23445566777 6788888887321
Q ss_pred -ecccCCCCCCceEEEccCCCCCC-CceEEEEEECCCCCccCchHHhhhhhccchhH--HHHHhhh--chHHHHHHHHHH
Q 014714 176 -ILGKEGNGSDSLAVQLVDEEHWN-DLVIIIAVVSSRQKETSSTTGMRESVETSLLL--QHRAKEV--VPKRIVQMEEAI 249 (420)
Q Consensus 176 -~~g~~~~g~ds~a~~i~~~~~wp-~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~--~~~~~~~--~~~~~~~l~~Al 249 (420)
...+.. .....+.+..+..+. .+..-++.|-.. |+--.+.-.|.++. +.+- ++..++. ..+..++.-+.+
T Consensus 769 r~rael~--~~ie~eeiTipe~f~ekL~dhLLLVYTG-KTRLAkNLLQdViR-n~far~~a~~Q~ah~l~~~tdecAegf 844 (948)
T KOG4644|consen 769 RCRAELN--HGIEHEEITIPEEFREKLEDHLLLVYTG-KTRLAKNLLQDVIR-NFFARCKATKQKAHKLAEATDECAEGF 844 (948)
T ss_pred cchhhcc--CCceeeeecCCHHHHHHHhhcEEEEEeC-chHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 111223333322221 111112223322 22222222222211 1110 1111111 123456777788
Q ss_pred HcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHHHH
Q 014714 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELL 329 (420)
Q Consensus 250 ~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~v~ 329 (420)
++|..+.+++..+.-..+ .-.+ -|++.. ++.+++++++.. ...|.. ....|||..-|++..-++.. -.
T Consensus 845 ~kGsl~LlgecL~~Yweq--Kk~M--apgCEP--l~Vr~lldmLap--h~hges--gw~AGAGGGGFiYLl~kEpq--qk 912 (948)
T KOG4644|consen 845 EKGSLELLGECLEHYWEQ--KKFM--APGCEP--LNVRELLDMLAP--HKHGES--GWAAGAGGGGFIYLLIKEPQ--QK 912 (948)
T ss_pred hcCcHHHHHHHHHHHHHh--hhcc--CCCCCC--CcHHHHHHHhcc--cccccc--chhccCCCCcEEEEEecCCC--CH
Confidence 999999999976542111 1111 133332 456777777754 234542 23347887777665543321 22
Q ss_pred HHHHhhCCCCCC
Q 014714 330 QRLLFFFPPNSE 341 (420)
Q Consensus 330 ~~l~~~f~~~~~ 341 (420)
+++..+++++++
T Consensus 913 eaiEa~Lak~eg 924 (948)
T KOG4644|consen 913 EAIEAFLAKNEG 924 (948)
T ss_pred HHHHHhhccCCC
Confidence 345555666544
No 58
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=95.07 E-value=3.8 Score=40.29 Aligned_cols=52 Identities=29% Similarity=0.400 Sum_probs=35.2
Q ss_pred ccccccchHHHHHHHHHHHHH--hCCCCCH-HHHHHHH------Hh---ccC-ccccccccCeEE
Q 014714 123 AAGLASSAAGFACLVFSLAKL--MNLKENQ-SQLSAIA------RQ---GSG-SACRSLFGGFVK 174 (420)
Q Consensus 123 aaGLGSSAA~~aA~v~Al~~l--~~l~ls~-~eL~~iA------r~---gsG-sa~~sl~GG~V~ 174 (420)
--||||||+.+..++-.+.-. .+.+++. .++-++| +| ||| +.+.++||+.+.
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGsiiy 171 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIY 171 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcceEE
Confidence 479999999999888333222 4555665 5555555 33 355 568899999975
No 59
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=89.82 E-value=2.9 Score=43.98 Aligned_cols=48 Identities=29% Similarity=0.354 Sum_probs=38.7
Q ss_pred ccEEEEEecCCCCccccccchHHHHHHHHHHHHHh-CCC--CCHHHHHHHH
Q 014714 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLM-NLK--ENQSQLSAIA 157 (420)
Q Consensus 110 ~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~-~l~--ls~~eL~~iA 157 (420)
-++.|-...++|++.||.|||+-..+...|..++. |-+ ....++..|-
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~ 191 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATIT 191 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcce
Confidence 48899999999999999999887777777777776 777 6666777665
No 60
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=75.92 E-value=27 Score=35.42 Aligned_cols=51 Identities=29% Similarity=0.364 Sum_probs=32.2
Q ss_pred cccccchHHHHHHHHHHHHHhCC---C-------CCH--H----HHHHHH------HhccC-ccccccccCeEE
Q 014714 124 AGLASSAAGFACLVFSLAKLMNL---K-------ENQ--S----QLSAIA------RQGSG-SACRSLFGGFVK 174 (420)
Q Consensus 124 aGLGSSAA~~aA~v~Al~~l~~l---~-------ls~--~----eL~~iA------r~gsG-sa~~sl~GG~V~ 174 (420)
-||||||+..-+++.++..-++. + ++. . -|+++| ..||| +++.+.||....
T Consensus 153 TGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS~rY 226 (459)
T KOG4519|consen 153 TGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQRY 226 (459)
T ss_pred cCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccceee
Confidence 69999999999999776555531 1 221 1 234444 23466 567778888743
No 61
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=37.47 E-value=83 Score=33.44 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCC--CceEEEeeccchHHHHHHH
Q 014714 254 FSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQR 331 (420)
Q Consensus 254 ~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~ 331 (420)
+..|+++|| .-|..|...|.- -.|+..++.+... ..|..++-+| ||| .-.+.+++..+.+. +.+.
T Consensus 387 ~~~~g~Lmn----eS~~Sc~~~yEc---scpel~qL~kial----a~g~~gaRlT-GaGwGGc~v~lvp~d~~~~-~~~~ 453 (489)
T KOG0631|consen 387 LADFGRLMN----ESHRSCDVLYEC---SCPELDQLCKIAL----ANGGVGARLT-GAGWGGCTVALVPADLVDF-AVAA 453 (489)
T ss_pred HHHHHHHhh----hhhHHHHHHHhc---CCHhHHHHHHHHH----hcCCccceee-ccccccceeeeccccchHH-HHHh
Confidence 556788874 456666654431 2456666665554 3566654444 555 55556666666666 7777
Q ss_pred HHhhCCCC
Q 014714 332 LLFFFPPN 339 (420)
Q Consensus 332 l~~~f~~~ 339 (420)
+.+.|-+.
T Consensus 454 ~~~~~Y~k 461 (489)
T KOG0631|consen 454 LKEIYYEK 461 (489)
T ss_pred hhhhhhcc
Confidence 66665443
No 62
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=30.44 E-value=65 Score=24.40 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 014714 129 SAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (420)
Q Consensus 129 SAA~~aA~v~Al~~l~~l~ls~~eL~~iAr 158 (420)
-.+.+||.++..+++.+.+.+..|++..+.
T Consensus 36 ~~~iaAA~iY~acr~~~~~~t~~eIa~~~~ 65 (71)
T PF00382_consen 36 PESIAAACIYLACRLNGVPRTLKEIAEAAG 65 (71)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHHHHhC
Confidence 467788899999999999999999988763
No 63
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=27.25 E-value=88 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 014714 130 AAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (420)
Q Consensus 130 AA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gs 161 (420)
--++++++.++++++|++++.++|.+-|.+..
T Consensus 127 P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie 158 (188)
T TIGR00162 127 PKAAKAVLEVLCKMLSLEVSVEALEERAKEME 158 (188)
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999999886553
No 64
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=23.28 E-value=2.5e+02 Score=21.08 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=22.6
Q ss_pred ccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEe
Q 014714 281 YMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIA 319 (420)
Q Consensus 281 yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~ 319 (420)
.|++.-+++ ||++...+|. .+.++|.+|+=.+++
T Consensus 24 pM~~~~R~~---vHdla~~~gl--~SeS~d~Ep~R~V~v 57 (59)
T cd06006 24 PMRSPQRAF---IHELAKDYGL--YSESQDPEPKRSVFV 57 (59)
T ss_pred CCCHHHHHH---HHHHHHHcCC--eeEecCCCCCcEEEE
Confidence 355555555 5555556786 678889999966654
No 65
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=21.42 E-value=1.3e+02 Score=28.96 Aligned_cols=29 Identities=28% Similarity=0.186 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 014714 132 GFACLVFSLAKLMNLKENQSQLSAIARQG 160 (420)
Q Consensus 132 ~~aA~v~Al~~l~~l~ls~~eL~~iAr~g 160 (420)
++++++.+|++++|++++.++|.+-|.+.
T Consensus 185 AA~~ll~~l~~l~~~~id~~~L~e~Ae~i 213 (238)
T TIGR00161 185 AAASLVEVLNKMLNTNVDPEPLLKEAEAI 213 (238)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 58889999999999999999998888654
Done!