Query 014714
Match_columns 420
No_of_seqs 288 out of 1433
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f0n_A Mevalonate pyrophosphat 100.0 6.9E-88 2.4E-92 683.6 35.9 390 7-419 21-412 (414)
2 2hke_A Diphosphomevalonate dec 100.0 6E-69 2.1E-73 546.3 38.6 373 8-412 4-380 (380)
3 1fi4_A Mevalonate 5-diphosphat 100.0 1.3E-68 4.4E-73 549.8 35.2 390 7-419 23-415 (416)
4 3lto_A Mevalonate diphosphate 100.0 4.6E-67 1.6E-71 519.9 32.9 298 9-339 2-311 (323)
5 3qt5_A Mevalonate diphosphate 100.0 7.5E-63 2.6E-67 493.1 33.6 309 5-337 5-314 (332)
6 2gs8_A Mevalonate pyrophosphat 100.0 1.3E-50 4.4E-55 401.0 30.8 294 8-334 7-302 (317)
7 3hul_A HSK, HK, homoserine kin 100.0 5.7E-31 1.9E-35 258.9 25.9 266 9-337 2-272 (298)
8 1h72_C HK, homoserine kinase; 100.0 2.3E-30 7.8E-35 252.6 26.1 271 9-338 2-283 (296)
9 3pyf_A 4-diphosphocytidyl-2-C- 100.0 1.7E-29 5.9E-34 249.2 22.7 272 8-336 6-282 (306)
10 2v8p_A 4-diphosphocytidyl-2-C- 100.0 7.3E-29 2.5E-33 240.1 19.7 254 7-330 4-260 (271)
11 2hfs_A Mevalonate kinase, puta 100.0 4.9E-26 1.7E-30 225.5 29.2 282 10-338 14-315 (332)
12 2oi2_A Mevalonate kinase; enzy 99.9 1.4E-25 5E-30 217.7 28.6 268 9-337 5-284 (292)
13 1uek_A 4-(cytidine 5'-diphosph 99.9 9.6E-26 3.3E-30 218.4 18.6 252 12-334 5-256 (275)
14 2x7i_A Mevalonate kinase; tran 99.9 3.7E-24 1.3E-28 209.8 29.5 273 8-337 5-298 (308)
15 4hac_A Mevalonate kinase; GHMP 99.9 8.1E-24 2.8E-28 209.8 28.9 266 9-335 21-304 (321)
16 2cz9_A Probable galactokinase; 99.9 2.7E-24 9.2E-29 214.2 25.6 282 10-337 2-330 (350)
17 2ww4_A 4-diphosphocytidyl-2C-m 99.9 2.5E-25 8.7E-30 216.9 16.7 250 10-333 5-262 (283)
18 1pie_A Galactokinase; galactos 99.9 8.1E-23 2.8E-27 209.4 30.4 280 10-337 49-395 (419)
19 1kkh_A Mevalonate kinase; mixe 99.9 1.9E-22 6.6E-27 198.4 26.1 271 9-335 5-306 (317)
20 2pg9_A Phosphomevalonate kinas 99.9 3.3E-22 1.1E-26 199.5 26.9 283 8-334 2-320 (337)
21 1wuu_A Galactokinase; galactos 99.9 1.8E-21 6.2E-26 198.1 30.3 277 10-336 37-379 (399)
22 3k85_A D-glycero-D-manno-hepto 99.9 8.9E-22 3E-26 197.9 17.2 287 8-335 2-322 (357)
23 3k17_A LIN0012 protein; protei 99.9 4.2E-20 1.4E-24 186.3 27.5 286 9-335 6-342 (365)
24 1kvk_A MK, mevalonate kinase; 99.8 2.6E-19 8.9E-24 181.8 27.3 275 9-336 5-360 (395)
25 2a2c_A N-acetylgalactosamine k 99.8 1.2E-18 4.1E-23 181.5 28.8 282 10-338 56-450 (478)
26 3gon_A Phosphomevalonate kinas 99.8 2E-18 6.7E-23 170.0 28.6 283 9-335 1-319 (335)
27 3v2u_C Protein GAL3; rossmann 99.5 7.3E-12 2.5E-16 131.2 24.9 207 110-338 146-491 (520)
No 1
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=100.00 E-value=6.9e-88 Score=683.60 Aligned_cols=390 Identities=52% Similarity=0.842 Sum_probs=339.7
Q ss_pred eeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHH
Q 014714 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI 86 (420)
Q Consensus 7 ~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~ 86 (420)
..++||+||+||||||||||||++++||.|+|||+||++++|+|+|+|++++++++|++||||++++...+|+++|++++
T Consensus 21 ~~~~t~~A~~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~~l~~i 100 (414)
T 3f0n_A 21 DLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREI 100 (414)
T ss_dssp CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHHHHHHH
T ss_pred CceEEEEecccchhhhhcccccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEECCEecCcccHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999998888999999998776678999999999
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~ 166 (420)
|++++..+..+.+. ..|.+...+++|+++|+||+++|||||||++||+++|+|++|++ .++|+++|++|+||+||
T Consensus 101 R~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~ 175 (414)
T 3f0n_A 101 RRLARKRRSTEDGD--TLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACR 175 (414)
T ss_dssp HHHHHC-------C--CHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGG
T ss_pred HHHhcccccccccc--cccccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcch
Confidence 99987642111110 11234467999999999999999999999999999999999998 46999999999999999
Q ss_pred ccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHH
Q 014714 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (420)
Q Consensus 167 sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~ 246 (420)
|+|||||+|..+...++.++++++++++.|||+++++++++|..+|+++||++|++++++++++++|+.+++..++..|+
T Consensus 176 s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~v~~~~~~~~~~l~ 255 (414)
T 3f0n_A 176 SLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMT 255 (414)
T ss_dssp GGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHH
T ss_pred HhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHHHHHHHHHHHHHHHH
Confidence 99999999988866677889999998778999999999999999999999999999999999999999874588999999
Q ss_pred HHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhc-CCCcEEEeeCCCCceEEEeeccchH
Q 014714 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVAYTFDAGPNAVLIARNRKIA 325 (420)
Q Consensus 247 ~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~-Ga~~~a~tsgAGPtv~~i~~~~~~~ 325 (420)
.||.++||+.|++++|+|+++||++|++++||++||+|.+.++++.++++++.. |+. ++||||||||+++|+++++.+
T Consensus 256 ~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~-~~~tsdAGPnv~vl~~~~~~~ 334 (414)
T 3f0n_A 256 RCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK-VAYTFDAGPNAVIFTLEDTVA 334 (414)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEECCSSSCEEEEEEHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCce-EEEEECCCCCEEEEEecccHH
Confidence 999999999999999999999999999999999999999999999999987654 676 899999999999999998888
Q ss_pred HHHHHHHHhhCCCCCCCCcCccccCccchhhhccCCCcccccCCCCCcccc-cccccccCCCcceEEEeCCCCCceecCC
Q 014714 326 TELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSD 404 (420)
Q Consensus 326 ~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~vg~gp~~~~~ 404 (420)
+ +.+.|++.|++..+|+ .|++|.+ +....+++++. .+..++.+++|+|||||+||+||+++++
T Consensus 335 ~-v~~~l~~~f~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~gp~~~~~ 398 (414)
T 3f0n_A 335 E-FVAAVRHSFPPAANGD--KFLKGLQ-------------VAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDD 398 (414)
T ss_dssp H-HHHHHHHHSCCSCC----CCEEESC-------------CCCCCCCHHHHHHSCSSCCTTSEEEEEEEEBCCCCEEECC
T ss_pred H-HHHHHHHhcCCCCCcc--cccccCc-------------cccccCChhhhhcccccccCCceeEEEECCCCCCCEECCc
Confidence 7 9999999999876654 3444432 33333445555 5556668999999999999999999998
Q ss_pred CcccccCCCCCCCCC
Q 014714 405 DSKALLNPKSGLPKE 419 (420)
Q Consensus 405 ~~~~l~~~~~~~~~~ 419 (420)
+++||||+ +|+|+.
T Consensus 399 ~~~~l~~~-~g~~~~ 412 (414)
T 3f0n_A 399 THDHLLGQ-DGLPQR 412 (414)
T ss_dssp GGGCSBCT-TSSBC-
T ss_pred hhHhcCCC-CCCcCC
Confidence 89999995 999985
No 2
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=100.00 E-value=6e-69 Score=546.30 Aligned_cols=373 Identities=38% Similarity=0.651 Sum_probs=316.6
Q ss_pred eEEEEEecceeEEEeeecccc--CCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC-CcchHHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRD--ETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLK 84 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd--~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~-~~~r~~~~l~ 84 (420)
+++||+||+|||||||||||| ..+++|.|||||+||+|++||++++|+.+++++++++++||++.+. +++++++|++
T Consensus 4 ~~~~a~A~~Nial~ky~Gkrddg~~~~vP~~dslglaL~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~v~~~~~ 83 (380)
T 2hke_A 4 QCVTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLNGTEVDVGKTPRVQSMLL 83 (380)
T ss_dssp CEEEEEECCEEEEECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEETTEEECGGGCHHHHHHHH
T ss_pred ccEEEEcCccchhhhhcccccCcccccCCCCCceEEEecCCCCceEEEEEECCCCCccEEEECCcccCchhHHHHHHHHH
Confidence 569999999999999999999 7779999999999999888999999998754456899999987654 5678888999
Q ss_pred HHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc
Q 014714 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 164 (420)
Q Consensus 85 ~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa 164 (420)
.++++++.. +...+++|+++|+||+++|||||||++||++.|+|+++|++ +||+++|++|+||+
T Consensus 84 ~~~~~~~~~-------------~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~Gsv 147 (380)
T 2hke_A 84 HLRSTCPEE-------------LKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGSGSA 147 (380)
T ss_dssp HHHTSSCHH-------------HHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCGGG
T ss_pred HHHHHhccc-------------CCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcCcce
Confidence 888876530 01358999999999999999999999999999999999987 89999999999999
Q ss_pred ccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHH
Q 014714 165 CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQ 244 (420)
Q Consensus 165 ~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~ 244 (420)
|||+|||||+|..|.+.++.+++.++++++.+||++++++++++...+.++||.+|++++++++.+++++.+++..++..
T Consensus 148 a~s~~GG~v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~r~~~~~~~~~~~~~~~~~~~~~~~ 227 (380)
T 2hke_A 148 CRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKI 227 (380)
T ss_dssp GGGGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHHHHHHHHCTTHHHHHHTHHHHHHHH
T ss_pred eeehhCCeEEEecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCCHHHHHHHHhcChhHHHHHHHHHHHHHHH
Confidence 99999999999877544566778899877677999998888888777889999999998888888888886545889999
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccch
Q 014714 245 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKI 324 (420)
Q Consensus 245 l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~ 324 (420)
|+.||.++|++.|+++++.|+|.||+++++.+|++.|++|.+.++++.+++++...|+..++++||||||+|+|+++++.
T Consensus 228 l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaGPtv~~l~~~~~~ 307 (380)
T 2hke_A 228 ASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGANCFLFVLKEDL 307 (380)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSCEEEEEEGGGH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCCCcEEEEECHHHH
Confidence 99999999999999999999999999999999999999999999999999876544833488999999999999998776
Q ss_pred HHHHHHHHHhhCCCCCCCCcCccccCccchhhhccCCCcccccCCCCCcccc-cccccccCCCcceEEEeCCCCCceecC
Q 014714 325 ATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLS 403 (420)
Q Consensus 325 ~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~vg~gp~~~~ 403 (420)
.+ +.+.+++.|+... ..|..+..++++. +.....+.++. .+. ..+++|+|+|+|+||+||+++
T Consensus 308 ~~-v~~~l~~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~g~~~~- 371 (380)
T 2hke_A 308 PE-AVAMLMEHFPTPF----EKFFFGDRELLEK--------VKVVSLPDEYKKLID--HPKKPFEMLLQSPVGCGVKYL- 371 (380)
T ss_dssp HH-HHHHHHHHSCCCG----GGEEESCHHHHHH--------HHHCCCCGGGSSCSC--CCCCCCSEEEEEEBCCCCEEE-
T ss_pred HH-HHHHHHHhccccc----ccccccchhhhcc--------ccccCCChhhhhhhh--ccCCCceEEEEcCCCCCCEec-
Confidence 66 9999999998652 1444455566662 22233455555 333 568999999999999999999
Q ss_pred CCcccccCC
Q 014714 404 DDSKALLNP 412 (420)
Q Consensus 404 ~~~~~l~~~ 412 (420)
++++||||+
T Consensus 372 ~~~~~~~~~ 380 (380)
T 2hke_A 372 GPSESLIPP 380 (380)
T ss_dssp CGGGCSSCC
T ss_pred CchhhccCc
Confidence 467999973
No 3
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=100.00 E-value=1.3e-68 Score=549.77 Aligned_cols=390 Identities=45% Similarity=0.684 Sum_probs=321.0
Q ss_pred eeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHH
Q 014714 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI 86 (420)
Q Consensus 7 ~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~ 86 (420)
|++++++||+|||+||||||||++|++|.+||||+||++++||++++|+.+++++++++++||+..+..++++++|++.+
T Consensus 23 ~~~~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~~~v~~~~~~~~~~i~i~G~~~~~~~~~v~~~~~~~ 102 (416)
T 1fi4_A 23 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDL 102 (416)
T ss_dssp CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHHHHHH
T ss_pred ceEEEEEecceEEEEecccccCCceecccccceEEEEEcCCCcceEEEEEcCCCCccEEEECCccccccchHHHHHHHHH
Confidence 46799999999999999999999999999999999999878999999998765557899999987554567899999999
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR 166 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~ 166 (420)
++.++..++.+.. .|.+...+++|+++|+||+++|||||||+++|++.|+|++||++++.+||+++|++|+||+|+
T Consensus 103 ~~~~~~~~~~~~~----~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~Gs~~~ 178 (416)
T 1fi4_A 103 RQLRKEMESKDAS----LPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACR 178 (416)
T ss_dssp HHHHHHHHTTCTT----SCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGG
T ss_pred HHHhccccccccc----cccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCCchhe
Confidence 9887642111111 022235689999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHH
Q 014714 167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 246 (420)
Q Consensus 167 sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~ 246 (420)
|+||||++|..|...++.+++..++.+..+||+++++++++++..+.+++|.+|++.+++++.++.++.+++..++..|+
T Consensus 179 sl~GG~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 258 (416)
T 1fi4_A 179 SLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMR 258 (416)
T ss_dssp GGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHH
T ss_pred EeeCCcEEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHHhhcCHhHHHHHHHHHHHHHHHHH
Confidence 99999999987754455677888887656799999888888887789999999999888888888888765588999999
Q ss_pred HHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcC-CCcEEEeeCCCCceEEEeeccchH
Q 014714 247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG-SPQVAYTFDAGPNAVLIARNRKIA 325 (420)
Q Consensus 247 ~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~G-a~~~a~tsgAGPtv~~i~~~~~~~ 325 (420)
.||.++|++.|+++++.|+|.||+++++++|++.|++|.+.++++.+++++...| +. ++++||||||+|+|+++++.+
T Consensus 259 ~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~-~a~~SGaGPtv~al~~~~~~~ 337 (416)
T 1fi4_A 259 KAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETI-VAYTFDAGPNAVLYYLAENES 337 (416)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEEECSSSCEEEEEEGGGHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCce-EEEEecCCCcEEEEECHHHHH
Confidence 9999999999999999999999999999999999999999999999998754347 54 888999999999999987766
Q ss_pred HHHHHHHHhhCCCCCCCCcCccccCccch-hhhccCCCcccccCCCCCcccc-cccccccCCCcceEEEeCCCCCceecC
Q 014714 326 TELLQRLLFFFPPNSETDLNSYVLGDKSI-LRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLS 403 (420)
Q Consensus 326 ~~v~~~l~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~vg~gp~~~~ 403 (420)
+ +.+.+++.|+...+|... ..+. ++. + ....++.++. .+..++.+++|+|+|||+||+||+++.
T Consensus 338 ~-v~~~l~~~~~~~~~~~~~-----~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~gp~~~~ 403 (416)
T 1fi4_A 338 K-LFAFIYKLFGSVPGWDKK-----FTTEQLEA--F------NHQFESSNFTARELDLELQKDVARVILTQVGSGPQETN 403 (416)
T ss_dssp H-HHHHHHHHHTTSTTSTTT-----CCHHHHHH--H------HHHHHTSCCCSSCCCSSGGGGEEEEEEEEBCCCCEECS
T ss_pred H-HHHHHHHhcccccccccc-----cccccccc--c------cccCCChhhhhhccccccCCCceEEEECCCCCChhhhH
Confidence 6 999999999844344321 1111 221 1 0011233444 344455678999999999999999994
Q ss_pred CCcccccCCCCCCCCC
Q 014714 404 DDSKALLNPKSGLPKE 419 (420)
Q Consensus 404 ~~~~~l~~~~~~~~~~ 419 (420)
+|||++ +|+|+.
T Consensus 404 ---~~~~~~-~~~~~~ 415 (416)
T 1fi4_A 404 ---ESLIDA-KTGLPK 415 (416)
T ss_dssp ---CCSSCS-SSCC--
T ss_pred ---HhccCC-CCCCCC
Confidence 899996 888864
No 4
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=100.00 E-value=4.6e-67 Score=519.93 Aligned_cols=298 Identities=29% Similarity=0.400 Sum_probs=264.8
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceE---EEcCccc---cCC-cchHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRM---WLNGKEI---SLG-GGRYQN 81 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i---~lnG~~~---~~~-~~r~~~ 81 (420)
..+|+||+|||+||||||||+.+|||.|+|||+||+ ++||+|+|++ +++++|++ ||||+++ +.. .+++..
T Consensus 2 ~~~a~a~~nialiKYwGk~d~~l~lP~n~SiS~tl~--~~~t~T~v~~-~~~~~d~~~~~~lng~~~~~~~~~~~~~~~~ 78 (323)
T 3lto_A 2 HWFAQAPANIALIKYMGKKDENSNLPDNSSLSYTLS--NLLSSVKLEK-LPTKKDIWEPLTIPGAPEFNLSVEAQKRFID 78 (323)
T ss_dssp EEEEEEEEEEEEECCTTCBCTTTCCBSSCEEEEEEE--EEEEEEEEEE-CSSSSCEECCBCTTSSBCCCCCSHHHHHHHH
T ss_pred ceEEEecchhHHhHhcCcccccccCCCCCceeEEcC--CCeeEEEEEe-cCCCCCeeeeEEECCEeccccccccchhHHH
Confidence 478999999999999999999999999999999999 6999999999 77788999 9999943 221 223344
Q ss_pred HHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHH----HHHHHHhCCCC-CHHHHHHH
Q 014714 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLV----FSLAKLMNLKE-NQSQLSAI 156 (420)
Q Consensus 82 ~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v----~Al~~l~~l~l-s~~eL~~i 156 (420)
+++.+.+.++. ..+++|+++|+||+++|||||||++||++ .|+|++||+++ +.+||+++
T Consensus 79 ~i~~~l~~~~~----------------~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~l 142 (323)
T 3lto_A 79 HLVRLKEYFGY----------------VGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQL 142 (323)
T ss_dssp HHHHHHHHHTC----------------CCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred HHHHHHHHhCC----------------CCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 55555555443 46899999999999999999999999999 99999999999 99999999
Q ss_pred HHhccCccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhh
Q 014714 157 ARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKE 236 (420)
Q Consensus 157 Ar~gsGsa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~ 236 (420)
|++|+||+|||+|||||+|..| +++++. .+||++.++++++|+.++.++|+++|+. +++++++++++++
T Consensus 143 A~~gsGsaa~si~GG~v~~~~g--------~~~~l~--~~~~~l~~~v~vi~~~~~~vsT~~~~~~-l~~~~~~~~~~~~ 211 (323)
T 3lto_A 143 SRLGSGSSCRSFYAPWALWTGD--------KVSAID--LPYKDLLHQVIVISSQEKEIPSRVAHKL-VKTSPFYETRSER 211 (323)
T ss_dssp HHTTCGGGGGGGSCSEEEEETT--------EEEECC--CSCCSCEEEEEECCCCTTCCCHHHHHHH-GGGSTTTTTHHHH
T ss_pred HHHhCCCcchhhhCCEEEEecC--------cEEEcc--CCCCCCeEEEEEECCCCCCCCCHHHHhh-cccChhHHHHHHH
Confidence 9999999999999999999765 367775 3589999988888888889999999998 6889999888865
Q ss_pred hchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceE
Q 014714 237 VVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAV 316 (420)
Q Consensus 237 ~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~ 316 (420)
+..++..|+.||+++||+.|++++|.|+|.||+++++++||+.||+|.+.++++.++++++..|+. ++|+||||||++
T Consensus 212 -~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~-~~~tsgAGPnv~ 289 (323)
T 3lto_A 212 -AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDG-PVVTMDAGPNVH 289 (323)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCC-CEEECCSSSCEE
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCe-EEEEECCCCCeE
Confidence 478999999999999999999999999999999999999999999999999999999987567887 889999999999
Q ss_pred EEeeccchHHHHHHHHHhhCCCC
Q 014714 317 LIARNRKIATELLQRLLFFFPPN 339 (420)
Q Consensus 317 ~i~~~~~~~~~v~~~l~~~f~~~ 339 (420)
+++++++.++ +.+.|++.|+..
T Consensus 290 ~l~~~~~~~~-v~~~l~~~~~~~ 311 (323)
T 3lto_A 290 LLYRSDQTDL-ARQFKSDHLVGN 311 (323)
T ss_dssp EEECGGGHHH-HHHHHHHHTTTT
T ss_pred EEEecccHHH-HHHHHHHHhHhH
Confidence 9999988887 999999998764
No 5
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=100.00 E-value=7.5e-63 Score=493.09 Aligned_cols=309 Identities=36% Similarity=0.576 Sum_probs=273.8
Q ss_pred cceeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC-CcchHHHHH
Q 014714 5 KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCL 83 (420)
Q Consensus 5 ~~~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~-~~~r~~~~l 83 (420)
.++++++|+||+||||||||||||++|++|+|||||+||+ .+|++|+|+.+++++++++++||+..+. +.+++.+++
T Consensus 5 ~~~~~~~~~ap~nialiky~gk~~~~~~lP~~dslglal~--~~~~~~~v~~~~~~~~~~~~i~g~~~~~~~~n~v~~~~ 82 (332)
T 3qt5_A 5 SMVKSGKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD--RFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQNYM 82 (332)
T ss_dssp TTCEEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE--EEEEEEEEEEETTCSSCEEEETTEECCHHHHHHHHHHH
T ss_pred cceEEEEEEecCcEEEEeeeeeccCCccccCCCceEEEec--CCCCeeEEEEcCCCCccEEEECCccCCcchHHHHHHHH
Confidence 5688999999999999999999999999999999999998 5899999998877667999999987654 356888899
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 014714 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (420)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGs 163 (420)
+.+++.++. ..+++|+++|+||+++|||||||+++|++.|++++|+++++.+||.++|+++||+
T Consensus 83 ~~~~~~~~~----------------~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~g~ 146 (332)
T 3qt5_A 83 NIVRDLAGN----------------RLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGS 146 (332)
T ss_dssp HHHHHHHTC----------------CCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHCGG
T ss_pred HHHHHhcCC----------------CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence 999888754 3579999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHH
Q 014714 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 243 (420)
Q Consensus 164 a~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~ 243 (420)
+|+|+|||+++|..|. ++.+++++++++...||++++++++++...++++||.+|++.+++++.+++++.+ +..++.
T Consensus 147 ~~~~~~GG~~~~~~g~--~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~~~~~~~~~~s~~~~~~v~~-~~~~~~ 223 (332)
T 3qt5_A 147 ASRSIFGGFAEWEKGH--DDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDH-VDEDLN 223 (332)
T ss_dssp GGGGGSCSEEEEECCS--STTTCEEEEECCTTGGGGEEEEEECCCCCCCC--CHHHHHHHHHHCTTHHHHHHH-HHHHHH
T ss_pred chhhhcCCeEEEecCC--CCccceeeecccccCCCCcEEEEEEEcCCCCCCchHHHHHHhhhcChhHHHHHHH-HHHHHH
Confidence 9999999999998764 3566778888644457899988888877778899999999988888888888876 466999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccc
Q 014714 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 323 (420)
Q Consensus 244 ~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~ 323 (420)
.|+.||.++|++.|++++++|+++||+++++.+|+++|++|.+.++++.+++++ +.|+. ++++||||||+++|+++++
T Consensus 224 ~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~-~~Ga~-~a~~SGaGPtv~~l~~~~~ 301 (332)
T 3qt5_A 224 EAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCR-KANLP-CYFTMDAGPNVKVLVEKKN 301 (332)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHH-HTTCC-EEEECCSSSCEEEEEEHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHH-hCCCc-EEEEeCCCCcEEEEECHHH
Confidence 999999999999999999889999999999999999999999999999999875 57987 8889999999999999876
Q ss_pred hHHHHHHHHHhhCC
Q 014714 324 IATELLQRLLFFFP 337 (420)
Q Consensus 324 ~~~~v~~~l~~~f~ 337 (420)
..+ +.+.|++.|+
T Consensus 302 a~~-v~~~l~~~~~ 314 (332)
T 3qt5_A 302 KQA-VMEQFLKVFD 314 (332)
T ss_dssp HHH-HHHHHHTTSC
T ss_pred HHH-HHHHHHHhCC
Confidence 555 8888887764
No 6
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=100.00 E-value=1.3e-50 Score=401.04 Aligned_cols=294 Identities=28% Similarity=0.456 Sum_probs=241.7
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEE-cCCCCcceEEEcCccccC-CcchHHHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAV-SPSFDQDRMWLNGKEISL-GGGRYQNCLKE 85 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~-~~~~~~d~i~lnG~~~~~-~~~r~~~~l~~ 85 (420)
.+++++||+||++||||||||++|++|.+||++++|+ .+|++++|+. +++++.++++++|...+. +.+++..+++.
T Consensus 7 ~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~--~l~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~n~v~~~~~~ 84 (317)
T 2gs8_A 7 NVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE--NMFTTTSVSFLPDTATSDQFYINGILQNDEEHTKISAIIDQ 84 (317)
T ss_dssp CEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE--EEEEEEEEEECCTTCCSCEEEETTEECCHHHHHHHHHHHTT
T ss_pred CcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEee--cccceEEEEEEcCCCCeEEEEECCCccccchHHHHHHHHHH
Confidence 5689999999999999999999999999999999996 4999999997 543345789999965432 12233334333
Q ss_pred HHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccc
Q 014714 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (420)
Q Consensus 86 ~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~ 165 (420)
+++.. ..+++|+++|+||.++|||||||+++|++.|+++++|++++.+||.++|++++|++|
T Consensus 85 ~~~~~------------------~~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G~~~ 146 (317)
T 2gs8_A 85 FRQPG------------------QAFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSS 146 (317)
T ss_dssp TCCTT------------------CCCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGG
T ss_pred HHHhc------------------CCCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcchhH
Confidence 22221 157999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHH
Q 014714 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM 245 (420)
Q Consensus 166 ~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l 245 (420)
+|++||+++|.. ++.+...++++ ++++++++++|+..+.+++|+++++.+++++.++.+..+ +..++..+
T Consensus 147 ~~~~GG~~~~~~----~~~~~~~~~~~-----~~~~~~v~i~~~~~~~~~tt~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 216 (317)
T 2gs8_A 147 RSFFGPVAAWDK----DSGAIYKVETD-----LKMAMIMLVLNAAKKPISSREGMKLCRDTSTTFDQWVEQ-SAIDYQHM 216 (317)
T ss_dssp GGGSCSEEEECT----TTCCEEECCCC-----CCEEEEEEECCCSSCCSCHHHHHHHHHHHCTTHHHHHHH-HHHHHHHH
T ss_pred hhhcCChheEee----CCCceeEEEcc-----ccccEEEEEEECCCcCcccHHHHHHHhhcCHHHHHHHHH-HHHHHHHH
Confidence 999999998864 23334444442 256777777777667888999999877777777666554 47799999
Q ss_pred HHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchH
Q 014714 246 EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIA 325 (420)
Q Consensus 246 ~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~ 325 (420)
+.||.++|++.|+++++.|++.||+.++.++|++.|+.|.+.++++.+++++ ..|+. ++++||||||+|+++++++.+
T Consensus 217 ~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~-~~G~~-~~~~SGaGptv~~l~~~~~~~ 294 (317)
T 2gs8_A 217 LTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELR-QEGFA-CYFTMDAGPNVKVLCLEKDLA 294 (317)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHH-HTTCC-EEEECCSSSCEEEEEEGGGHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHH-hcCCc-EEEEecCCCeEEEEEcHHHHH
Confidence 9999999999999999999999999999999999999999999999888765 36876 889999999999999877655
Q ss_pred HHHHHHHHh
Q 014714 326 TELLQRLLF 334 (420)
Q Consensus 326 ~~v~~~l~~ 334 (420)
+ +.+.+++
T Consensus 295 ~-v~~~l~~ 302 (317)
T 2gs8_A 295 Q-LAERLGK 302 (317)
T ss_dssp H-HHHHHHT
T ss_pred H-HHHHHhc
Confidence 4 6666554
No 7
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.98 E-value=5.7e-31 Score=258.88 Aligned_cols=266 Identities=18% Similarity=0.168 Sum_probs=181.9
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcC-ccccC-CcchHHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNG-KEISL-GGGRYQNCLKEI 86 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG-~~~~~-~~~r~~~~l~~~ 86 (420)
++++++|...|++ .|++|||+++|+ +|++.+++... ++.++..++ ...+. +.+. +++.+
T Consensus 2 m~~v~vPat~anl-----------G~Gfd~lg~al~---l~d~v~~~~~~--~~~~i~~~~~~~~p~~~~nl---v~~a~ 62 (298)
T 3hul_A 2 SLRIRVPATTANL-----------GPGFDSCGLALT---LYLTLDIGAEA--DSWYIEHNIGGGIPHDETNV---IIETA 62 (298)
T ss_dssp CEEEEEEEEEESC-----------TTCTTTEEEEEE---EEEEEEEEEEC--SSCEEECCCCTTCCSSTTSH---HHHHH
T ss_pred eEEEEEeeceecc-----------CCCcchhhhhcc---cceEEEEEEcC--CceEEEecCcccCCCCCCcH---HHHHH
Confidence 4899999999998 899999999999 99999997422 133343332 12222 2333 44444
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---c
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---S 163 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsG---s 163 (420)
+.++.. ..+++|+++++||.++|||||||.++|++.|++++++++++.+||.++|.+++| +
T Consensus 63 ~~~~~~----------------~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg~~dd 126 (298)
T 3hul_A 63 LNLAPN----------------LTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDN 126 (298)
T ss_dssp HHHCTT----------------CCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSCSTT
T ss_pred HHHhcc----------------CCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCccc
Confidence 444432 257999999999999999999999999999999999999999999999999988 6
Q ss_pred cccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHH
Q 014714 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 243 (420)
Q Consensus 164 a~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~ 243 (420)
+++|++||+++ ..+. |......+++ ||++++++ +.|+. .++|.+.++ .++....+...+.+ ..++.
T Consensus 127 v~~~~~GG~~~-~~g~---ge~~~~~~~~----~p~~~~vl-v~p~~--~~sT~~a~~-~l~~~~~~~~~~~~--~~~~~ 192 (298)
T 3hul_A 127 VAPAVLGNWVV-GAKL---DGEDFYVRHL----FPDCALIA-FIPKA--ELLTSESRG-VLPDTLPFKEAVQA--SSIAN 192 (298)
T ss_dssp HHHHHHCSEEE-EEEE---TTEEEEEEEC----CC-CEEEE-EECCC--CCC---------CCEEEHHHHHHH--HHHHH
T ss_pred CcccccCCEEE-EEeC---CCcEEEEEcC----CCCeEEEE-EECCC--CCCcHHHHH-HHhhhccHHHHHHH--HHHHH
Confidence 78999999986 3332 2211223443 56666654 44543 466655544 33432223333433 34678
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccc
Q 014714 244 QMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 323 (420)
Q Consensus 244 ~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~ 323 (420)
.++.+|.++|++.|++++.+| .+|+.++. .+.|...++++.+++ .|++ ++.+|||||++|+++++++
T Consensus 193 ~~~~al~~~d~~~l~~~l~nd--~~~e~~~~------~~~p~l~~l~~~~~~----~Ga~-ga~~SGsGptv~al~~~~~ 259 (298)
T 3hul_A 193 VMIAAILRNDMTLAGEMMERD--LWHEKYRS------QLVPHLAQIRDVAKN----QGAY-AACLSGAGPTVLVFAPRNL 259 (298)
T ss_dssp HHHHHHTTTCHHHHHHHHTCC--CC-----C------TTGGGHHHHHHHHHT----TTCC-EEEECTTSSCEEEEECGGG
T ss_pred HHHHHHHcCCHHHHHHHHhhh--HHHHHHHH------hhCchHHHHHHHHHH----CCCE-EEEEeccchheEEEECHHH
Confidence 899999999999999987543 56775542 356888888777754 6887 6678899999999998555
Q ss_pred hHHHHHHHHHhhCC
Q 014714 324 IATELLQRLLFFFP 337 (420)
Q Consensus 324 ~~~~v~~~l~~~f~ 337 (420)
..+ +.+.+++.++
T Consensus 260 a~~-v~~~l~~~~~ 272 (298)
T 3hul_A 260 ANK-LQTSLQTLEI 272 (298)
T ss_dssp HHH-HHHHHHTTCC
T ss_pred HHH-HHHHHHhcCC
Confidence 444 8888877654
No 8
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.97 E-value=2.3e-30 Score=252.56 Aligned_cols=271 Identities=15% Similarity=0.121 Sum_probs=196.2
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC--CcchHHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL--GGGRYQNCLKEI 86 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~--~~~r~~~~l~~~ 86 (420)
+++++||..|+++ .|++|++++++| .++++++++..++ ...++..+|...+. +.+++.++++.+
T Consensus 2 ~i~v~aPaki~nl-----------G~g~~vl~~a~d--~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~n~v~~a~~~~ 67 (296)
T 1h72_C 2 KVRVKAPCTSANL-----------GVGFDVFGLCLK--EPYDVIEVEAIDD-KEIIIEVDDKNIPTDPDKNVAGIVAKKM 67 (296)
T ss_dssp EEEEEEEEEEECT-----------GGGTTTEEEEEE--EEEEEEEEEEESS-SSEEEEESCTTSCCCTTTSHHHHHHHHH
T ss_pred eEEEEEEeehhcc-----------ccchhhhHHhcc--cccEEEEEEecCC-CeEEEEEcCCcCCCCCccCcHHHHHHHH
Confidence 4788999999987 489999999999 3467777765532 12344446644332 346778888888
Q ss_pred HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC----
Q 014714 87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---- 162 (420)
Q Consensus 87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsG---- 162 (420)
++.++. ..+++|+++++||.++|||||||.++|++.|++++++++++.++|.++|.++++
T Consensus 68 ~~~~g~----------------~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g 131 (296)
T 1h72_C 68 IDDFNI----------------GKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSG 131 (296)
T ss_dssp HHHTTC----------------CCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHhCC----------------CCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccC
Confidence 877653 247999999999999999999999999999999999999999999999988776
Q ss_pred -----ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhh
Q 014714 163 -----SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEV 237 (420)
Q Consensus 163 -----sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~ 237 (420)
++++|++||++.+..+ .+....+++.+ ++++++ ++.|. ..++|.+.++ .++....+.+.+.+
T Consensus 132 ~~~~ddv~~~~~gg~~~~~~~-----~~~~~~~~~~~---~~~~~v-l~~p~--~~~~T~~~~~-~l~~~~~~~~~~~~- 198 (296)
T 1h72_C 132 AKHADNVAPAIFGGFTMVTNY-----EPLEVLHIPID---FKLDIL-IAIPN--ISINTKEARE-ILPKAVGLKDLVNN- 198 (296)
T ss_dssp SCCCTTHHHHHHCSEEEEEET-----TTTEEEEECCC---SCCCEE-EECCS--SCCCHHHHHH-TSCSCCCHHHHHHH-
T ss_pred CCCccchHHHHhCCEEEEEeC-----CceEEEEEcCC---CCeEEE-EEeCC--CCccHHHHHH-hccCcCcHHHHHHH-
Confidence 7788999999987432 12224555432 355554 34444 2455555444 34432223344444
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEE
Q 014714 238 VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 317 (420)
Q Consensus 238 ~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~ 317 (420)
..++..++.+|.++|++.|+++++. |.+|+.++ ..++|...++++.+++ . +. ++.+|||||++|+
T Consensus 199 -~~~~~~~~~al~~~d~~~~~~~~~~--n~~h~~~~------~~~~p~l~~~~~~~~~----~-a~-ga~~sGsG~~v~~ 263 (296)
T 1h72_C 199 -VGKACGMVYALYNKDKSLFGRYMMS--DKVIEPVR------GKLIPNYFKIKEEVKD----K-VY-GITISGSGPSIIA 263 (296)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHTT--CCSSHHHH------HTTSTTHHHHHHHHTT----T-EE-EEEECTTSSCEEE
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHhc--Ccchhhhh------hccCccHHHHHHHHHh----h-cc-eEEEecCChheEE
Confidence 3467789999999999999998744 57787664 3567888888887764 3 44 5667899999999
Q ss_pred EeeccchHHHHHHHHHhhCCC
Q 014714 318 IARNRKIATELLQRLLFFFPP 338 (420)
Q Consensus 318 i~~~~~~~~~v~~~l~~~f~~ 338 (420)
++.++...+ +.+.+.+.|+.
T Consensus 264 l~~~~~~~~-~~~~l~~~~~~ 283 (296)
T 1h72_C 264 FPKEEFIDE-VENILRDYYEN 283 (296)
T ss_dssp EECGGGHHH-HHHHHHHHCSC
T ss_pred EecHHHHHH-HHHHHHHhccC
Confidence 995444444 88888887754
No 9
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.97 E-value=1.7e-29 Score=249.21 Aligned_cols=272 Identities=14% Similarity=0.129 Sum_probs=198.2
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCc---cccC-CcchHHHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK---EISL-GGGRYQNCL 83 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~---~~~~-~~~r~~~~l 83 (420)
+.+++.|.+|+.| .--|||+++|| ...|+.++|+ ||++.+++..+ +.++.+.|. ..+. +++.+.+++
T Consensus 6 ~~~~apAKiNL~L-~v~~~r~DGyh--~l~s~~~al~---l~D~l~~~~~~---~~~i~~~g~~~~~~p~~~~Nlv~~A~ 76 (306)
T 3pyf_A 6 VTVRVPGKVNLYL-AVGDRREDGYH--ELTTVFHAVS---LVDEVTVRNAD---VLSLELVGEGADQLPTDERNLAWQAA 76 (306)
T ss_dssp EEEEEEEEEEEEE-EECCCCTTSCC--CEEEEEEEEE---EEEEEEEEECS---SCEEEEESTTGGGSCCSTTSHHHHHH
T ss_pred EEEEecceEEeec-ccCCcCCCCCc--chheeEEEcc---cCCEEEEEECC---CCEEEEeCCCccCCCCCCccHHHHHH
Confidence 4466666677766 55799999999 4889999998 99999998764 456777764 2333 356788888
Q ss_pred HHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc
Q 014714 84 KEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS 163 (420)
Q Consensus 84 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGs 163 (420)
+.+++.++. ..+++|+++++||.++|||||||+++|++.|++++|+++++.+||.++|.+.+++
T Consensus 77 ~~l~~~~g~----------------~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~~D 140 (306)
T 3pyf_A 77 ELMAEHVGR----------------APDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSD 140 (306)
T ss_dssp HHHHHHTTC----------------CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHhCC----------------CCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 888887754 3489999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhh-chHHH
Q 014714 164 ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEV-VPKRI 242 (420)
Q Consensus 164 a~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~-~~~~~ 242 (420)
+++|++||++. ..|.+ . ...+++.+ ++++++ ++.|.. .++|.+.++. ++.. ... ..+ ...+.
T Consensus 141 v~~~~~Gg~~~-~~g~g---e--~~~~l~~~---~~~~~v-l~~P~~--~vsT~~a~~~-l~~~---~~~-~~~~~~~~~ 203 (306)
T 3pyf_A 141 VPFALHGGTAL-GTGRG---E--ELATVLSR---NTFHWV-LAFADS--GLLTSAVYNE-LDRL---REV-GDPPRLGEP 203 (306)
T ss_dssp HHHHHHBSEEE-ECSSS---S--CCEEECCS---SCEEEE-EEECSS--CCCHHHHHHH-HHHH---HHH-SCCCCCCCH
T ss_pred CceeecCceEE-EEeeC---C--eEEEccCC---CCcEEE-EEECCC--CCcHHHHHHh-hhhh---ccc-cccccccCH
Confidence 99999999975 44431 1 23444322 455554 445543 5665554433 2211 000 011 12367
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeecc
Q 014714 243 VQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNR 322 (420)
Q Consensus 243 ~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~ 322 (420)
..++.+|.++|++.|++.+. |.++.. ...+.|...++++.+.+ .|++ ++.+||||||+|+++.++
T Consensus 204 ~~~~~al~~~d~~~l~~~l~---n~le~~-------~~~~~P~l~~i~~~~~~----~Ga~-ga~mSGsGptvfal~~~~ 268 (306)
T 3pyf_A 204 GPVLAALAAGDPDQLAPLLG---NEMQAA-------AVSLDPALARALRAGVE----AGAL-AGIVSGSGPTCAFLCTSA 268 (306)
T ss_dssp HHHHHHHHHTCHHHHGGGCE---ETTHHH-------HHHHCTHHHHHHHHHHH----TTCS-EEEECTTSSEEEEEESSH
T ss_pred HHHHHHHHhCCHHHHHHHhc---cchHHH-------HHHhChHHHHHHHHHHh----cCCC-EEEEcCcchhheEEeCCH
Confidence 88999999999999998653 345443 33456788888777764 6887 667789999999999876
Q ss_pred chHHHHHHHHHhhC
Q 014714 323 KIATELLQRLLFFF 336 (420)
Q Consensus 323 ~~~~~v~~~l~~~f 336 (420)
+.++++.+.+++..
T Consensus 269 ~~a~~~~~~l~~~g 282 (306)
T 3pyf_A 269 SSAIDVGAQLSGAG 282 (306)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC
Confidence 65555777777653
No 10
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.96 E-value=7.3e-29 Score=240.10 Aligned_cols=254 Identities=12% Similarity=0.073 Sum_probs=185.6
Q ss_pred eeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccC-CcchHHHHHHH
Q 014714 7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISL-GGGRYQNCLKE 85 (420)
Q Consensus 7 ~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~-~~~r~~~~l~~ 85 (420)
|+.+.+.|.+|+++ +++|+|+++|| ..+|++++|+ +|+++ ++. + +++.++|...+. +.+.+.++++.
T Consensus 4 m~~~~aPakinl~l-~v~g~r~dgyh--~~~sl~~ai~---l~~~v-~~~-~----~~i~i~~~~~~~~~~nlv~~a~~~ 71 (271)
T 2v8p_A 4 MIKVLSPAKINLGL-WVLGRLPSGYH--EILTLYQEIP---FYDEI-YIR-E----GVLRVETNIGIPQEENLVYKGLRE 71 (271)
T ss_dssp CEEEEEEEEEEEEE-EEEEECTTSCE--EEEEEEEEEE---EEEEE-EEE-E----SSCEEEESSCCCTTTCHHHHHHHH
T ss_pred eEEEeecceEEeeE-eecccCCCCCc--eEEEEEEEcC---cccEE-EEe-C----CeEEEEeCCCCCCCchHHHHHHHH
Confidence 45577778888886 89999999888 4779999998 89988 865 2 345566532222 35677788888
Q ss_pred HHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccc
Q 014714 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSAC 165 (420)
Q Consensus 86 ~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~ 165 (420)
+++..+. ..+++|+++++||.++|||||||+++|++.|+|++++++++.+||.++|.+++++++
T Consensus 72 ~~~~~g~----------------~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~dv~ 135 (271)
T 2v8p_A 72 FERITGI----------------EINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAP 135 (271)
T ss_dssp HHHHHCC----------------CCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTG
T ss_pred HHHHhCC----------------CCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHH
Confidence 8777653 257999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCeEEEecccCCCCCCceEEEccCCCCCC-CceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHH
Q 014714 166 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN-DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQ 244 (420)
Q Consensus 166 ~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp-~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~ 244 (420)
+|++||++++. |. |. ...+++ +| +++++++ .|. ..++|.+.++. ++... + .++..
T Consensus 136 ~~~~gg~~~~~-g~---g~--~~~~l~----~~~~~~~vl~-~p~--~~~sT~~~~~~-~~~~~-------~---~~~~~ 191 (271)
T 2v8p_A 136 FFLLGKSAIGR-GK---GE--VLEPVE----TEISGKITLV-IPQ--VSSSTGRVYSS-LREEH-------F---VTPEY 191 (271)
T ss_dssp GGGTCSEEEEE-TT---TT--EEEECC----CCCCSEEEEE-ECS--SCCCHHHHHHT-CCTTS-------C---CCHHH
T ss_pred HHhcCCeEEEE-Ec---CC--EEEEcc----CCCCcEEEEE-eCC--CCCCHHHHHHh-ccccc-------C---cchhH
Confidence 99999998653 32 11 244553 35 6676554 454 35655544442 22211 1 23445
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEE-eeCCCCceEEEeeccc
Q 014714 245 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAY-TFDAGPNAVLIARNRK 323 (420)
Q Consensus 245 l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~-tsgAGPtv~~i~~~~~ 323 (420)
+ .+|.++|++.|++++ + |.||+... .+.|...++++.+++ .|+ +. +|||||++|+++++++
T Consensus 192 ~-~al~~~d~~~~~~~~-~--n~l~~~~~-------~~~p~l~~~~~~~~~----~Ga---a~~mSGsG~~v~~l~~~~~ 253 (271)
T 2v8p_A 192 A-EEKIQRIISGEVEEI-E--NVLGDIAR-------ELYPEINEVYRFVEY----LGF---KPFVSGSGSTVYFFGGASE 253 (271)
T ss_dssp H-HHHHHHHHTTCGGGC-C--BHHHHHHH-------HHCHHHHHHHHHHHH----TTC---CCEECTTSSCEEESSCCCH
T ss_pred H-HHhhcCCHHHHHHHH-h--CChhhHhH-------HhChHHHHHHHHHHh----CCC---ccCccccCcCeEEEeCCHH
Confidence 6 899999999998864 3 57887633 345677777776654 575 45 7799999999998766
Q ss_pred hHHHHHH
Q 014714 324 IATELLQ 330 (420)
Q Consensus 324 ~~~~v~~ 330 (420)
.++++.+
T Consensus 254 ~a~~~~~ 260 (271)
T 2v8p_A 254 ELKKAAK 260 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5543444
No 11
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.95 E-value=4.9e-26 Score=225.53 Aligned_cols=282 Identities=13% Similarity=0.117 Sum_probs=185.5
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc-ccC----CcchHHHHHH
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-ISL----GGGRYQNCLK 84 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~-~~~----~~~r~~~~l~ 84 (420)
++++||..|.|+.||. .. .+..+|+++|+ ++++++|+..++....++ .++.. .+. ..+.+.++++
T Consensus 14 ~~~~ApgKi~L~Geh~---~~---~G~~~l~~ai~---~~~~v~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ 83 (332)
T 2hfs_A 14 GKNIGYGKVILFGEHF---VV---HGAEAIVAGIS---EYTECRLEINPGVPGLQV-DDQRPAIPGYIAQKRDEQIKAHQ 83 (332)
T ss_dssp SCCEEEEEEEEECTTG---GG---GTCCEEEEEEE---EEEEEEEEEETTCCSEEE-EECCCCCTTHHHHHHHHHHHHHH
T ss_pred EEEEEeEEEEEecCCE---EE---cCCeEEEEEec---ccEEEEEEEcCCCCCeEE-EecCccccccccccchhHHHHHH
Confidence 5677888888874443 32 35679999998 899999887531112222 23321 111 1223445566
Q ss_pred HHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC--
Q 014714 85 EIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG-- 162 (420)
Q Consensus 85 ~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsG-- 162 (420)
.+++..+.. ....+++|+++++||.++|||||||.++|++.|++++++++++.++|.++|.++++
T Consensus 84 ~~~~~~g~~-------------~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~ 150 (332)
T 2hfs_A 84 LVLDHLKVD-------------LSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGY 150 (332)
T ss_dssp HHHHHTTBC-------------CSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGS
T ss_pred HHHHHcCCc-------------cCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 665554420 01257999999999999999999999999999999999999999999999987652
Q ss_pred -------ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhcc----chhHH
Q 014714 163 -------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET----SLLLQ 231 (420)
Q Consensus 163 -------sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~t----s~~~~ 231 (420)
+.++|++||++.+..+. + .....+++. .+++++++ +.|. ..++|.+.+++.... .+.++
T Consensus 151 ~G~~~G~D~~~~~~Gg~~~~~~~~---g-~~~~~~~~~---~~~~~~vl-~~~~--~~~~T~~~~~~~~~~~~~~~~~~~ 220 (332)
T 2hfs_A 151 HGTPSGADNTAATYGGLILYRRQN---G-KSVFKPIAF---QQRLYLVV-VGTG--INASTAKVVNDVHKMKQQQPVQFK 220 (332)
T ss_dssp SSCCCSHHHHHHHHCEEEEEEECS---S-SEEEEEECC---CSCEEEEE-EECS--CCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred cCCCCcHhHHHHhcCCeEEEecCC---C-CcceeeecC---CCCcEEEE-EECC--CCccHHHHHHHHHHHHHhCHHHHH
Confidence 56789999998776553 1 123455542 24666554 4443 355666555432111 11111
Q ss_pred HHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCC
Q 014714 232 HRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDA 311 (420)
Q Consensus 232 ~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgA 311 (420)
...+. ...++..++.+|.++|++.|++++..+.+.+ +.+. ..+|...++++.+++ .|+. ++.+|||
T Consensus 221 ~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l-~~~~-------~~~p~l~~l~~~~~~----~Ga~-ga~~sGa 286 (332)
T 2hfs_A 221 RLYDN-YTHIVSQAREALQKGDLQRLGQLMNANHDLC-RQID-------VSCRELESIVQTCRT----YGAL-GAKLSGT 286 (332)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTT-------CCCHHHHHHHHHHHH----TTCS-EEEEESS
T ss_pred HHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcC-------CCCHHHHHHHHHHHH----cCCc-eEEeccC
Confidence 12221 2346788899999999999999876443333 3332 245777777776654 6887 5667799
Q ss_pred CC--ceEEEeeccchHHHHHHHHHhhCCC
Q 014714 312 GP--NAVLIARNRKIATELLQRLLFFFPP 338 (420)
Q Consensus 312 GP--tv~~i~~~~~~~~~v~~~l~~~f~~ 338 (420)
|| ++++++++++..+++.+.+.+.|..
T Consensus 287 G~gg~v~~l~~~~~~a~~~~~~l~~~~~~ 315 (332)
T 2hfs_A 287 GRGGIAVALAASSDQRDAIVKGLKAKCPE 315 (332)
T ss_dssp CSSSEEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred CCCcEEEEEecCcccHHHHHHHHHHHHhc
Confidence 99 8999998765433388888887764
No 12
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.95 E-value=1.4e-25 Score=217.73 Aligned_cols=268 Identities=13% Similarity=0.046 Sum_probs=176.6
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeee-CCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTL-DPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR 87 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL-~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r 87 (420)
+++++||..|.++ |+|.+. ++.++|+++| + ++++++|+..+ +.+.+++... .+.+..+. +
T Consensus 5 ~~~~~aP~ki~L~---Ge~~~~---~g~~~l~~ai~~---~~~~v~v~~~~----~~~~i~~~~~---~~~~~~~~---~ 65 (292)
T 2oi2_A 5 VGVGQAHSKIILI---GEHAVV---YGYPAISLPLLE---VEVTCKVVPAE----SPWRLYEEDT---LSMAVYAS---L 65 (292)
T ss_dssp CEEEEEEEEEEEE---CTTGGG---GTCCEEEEEEEE---EEEEEEEEECS----SCCCCCCCSH---HHHHHHHH---H
T ss_pred cEEEEeeeEEEEE---eCCeee---cCCcEEEEEEcC---cEEEEEEEECC----CceEEEecCc---cchhhhhh---H
Confidence 4778999999886 777653 5789999999 6 99999997652 2344444221 12222222 2
Q ss_pred HHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc----cCc
Q 014714 88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG----SGS 163 (420)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~g----sGs 163 (420)
.+.+. ...+++|+++++||.++|||||||.++|++.|++++++++++.++|.++|.++ .|+
T Consensus 66 ~~~~~---------------~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~ 130 (292)
T 2oi2_A 66 EYLNI---------------TEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMN 130 (292)
T ss_dssp HHHTC---------------SCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred HHhcc---------------cCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCC
Confidence 22221 12478999999999999999999999999999999999999999999999775 455
Q ss_pred ccc-----ccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhc
Q 014714 164 ACR-----SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVV 238 (420)
Q Consensus 164 a~~-----sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~ 238 (420)
+|. +.+||++.+..+. ..++++. .++.+ +++++.. ..++|.+.++.+....+..+..+.+ .
T Consensus 131 p~g~d~~~~~~gg~~~~~~~~-------~~~~~~~--~~~~~---~~i~~~~-~~~sT~~~~~~l~~~~~~~~~~~~~-~ 196 (292)
T 2oi2_A 131 PSGLDAKTCLSDQPIRFIKNV-------GFTELEM--DLSAY---LVIADTG-VYGHTREAIQVVQNKGKDALPFLHA-L 196 (292)
T ss_dssp CCSHHHHHHTCSSCEEEETTT-------EEEECCC--CCSCE---EEEEECS-SCCCHHHHHHHHHHTGGGGHHHHHH-H
T ss_pred CCchhHHHHhcCceEEEEcCC-------CceeecC--CCCCE---EEEEECC-CCCcHHHHHHHHHHHHhhhHHHHHH-H
Confidence 444 6799998775432 2445532 23432 3344432 4555555444322222211222332 2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCC--ceE
Q 014714 239 PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAV 316 (420)
Q Consensus 239 ~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGP--tv~ 316 (420)
......++.+|.++|++.|++++..+++.+++. ...+|...++++.+++ .|+. ++.+||||| +++
T Consensus 197 ~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~--------~~~~p~l~~l~~~~~~----~Ga~-ga~~sGaG~Gg~v~ 263 (292)
T 2oi2_A 197 GELTQQAEIAISQKDAEGLGQILSQAHLHLKEI--------GVSSLEADSLVETALS----HGAL-GAKMSGGGLGGCII 263 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHT----TTCS-EEEEESSSSSSEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHh----CCCc-eeeeccCCCCcEEE
Confidence 335678889999999999999886655666652 2446777777776654 5887 666779999 999
Q ss_pred EEeeccchHHHHHHHHHhhCC
Q 014714 317 LIARNRKIATELLQRLLFFFP 337 (420)
Q Consensus 317 ~i~~~~~~~~~v~~~l~~~f~ 337 (420)
+++++++..+++.+.+++.+.
T Consensus 264 ~l~~~~~~~~~~~~~l~~~~~ 284 (292)
T 2oi2_A 264 ALVTNLTHAQELAERLEEKGA 284 (292)
T ss_dssp EEESCHHHHHHHHHHHHHHTC
T ss_pred EEecCchHHHHHHHHHHhcCc
Confidence 999874333348888887764
No 13
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.94 E-value=9.6e-26 Score=218.36 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=176.3
Q ss_pred EEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHHHHHcc
Q 014714 12 AQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRAC 91 (420)
Q Consensus 12 ~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~r~~~~ 91 (420)
+.|.+|+.+ .-.|+|.++|| .-+|++++++ +|++++++.+ +.++..++ ..+ +.+.+.++++.+++..+
T Consensus 5 aPakinl~l-~v~g~r~dgyh--~~~sl~~ai~---l~~~v~~~~~----~~~i~~~~-~~~-~~n~v~~a~~~~~~~~g 72 (275)
T 1uek_A 5 APAKVNLGL-SVRFRREDGYH--ELHTLFAPFS---LADRLVVEPV----SSGLHFQG-PYG-RENLAYRAASLYLEAAG 72 (275)
T ss_dssp EEEEEEEEE-EEEEECTTSSE--EEEEEEEEEE---EEEEEEEEEE----SSCEEEES-TTG-GGSHHHHHHHHHHHHTT
T ss_pred ecCeEEEee-eecCcCCCCCc--eeeEEEEEcC---CCCEEEEEEC----cEEEEEcC-CCC-CccHHHHHHHHHHHHhC
Confidence 666666655 45699999988 4789999998 9999998762 35666666 333 45677788888877765
Q ss_pred ccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccccccC
Q 014714 92 DVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGG 171 (420)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~sl~GG 171 (420)
. ..+++|+++++||.++|||||||+++|++.|+++++++++ +|.++|++.++++++|++||
T Consensus 73 ~----------------~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~dv~~~~~Gg 133 (275)
T 1uek_A 73 Q----------------PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGADVPFFLLGR 133 (275)
T ss_dssp C----------------CCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCTTHHHHHHCS
T ss_pred C----------------CCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCCChHHHhcCC
Confidence 3 2579999999999999999999999999999999999998 89999999999999999999
Q ss_pred eEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHHHHHHc
Q 014714 172 FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQN 251 (420)
Q Consensus 172 ~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~Al~~ 251 (420)
++.+. +. |. ...+++ .|+++++++ .|. ..++|.+.++.. +.. .+.. ..++..++.+|.+
T Consensus 134 ~~~~~-g~---g~--~~~~l~----~~~~~~vl~-~p~--~~~sT~~~~~~~-~~~-----~~~~--~~~~~~~~~al~~ 192 (275)
T 1uek_A 134 GAEAR-GV---GE--RLKPLA----LPPVPAVVF-FPG--LRVPTPLVYRAV-RPE-----DFGP--DLPVEAILEALAR 192 (275)
T ss_dssp EEEEE-TT---TT--EEEEEC----CCCEEEEEE-ECC--CCCCHHHHHHTC-CGG-----GCCC--CCCHHHHHHHHHH
T ss_pred eEEEE-cc---Cc--eeEEcc----CCCcEEEEE-eCC--CCCchHHHHHhC-chh-----hccc--CCChHHHHHHHHh
Confidence 98653 32 11 245553 356666544 454 356665554432 211 0101 2235677788887
Q ss_pred CCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeeccchHHHHHHH
Q 014714 252 HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQR 331 (420)
Q Consensus 252 ~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~~~~~~v~~~ 331 (420)
+ ++. +. | |.|+... +.++|...++++.+++ .|+. ++.+|||||++|+++.+++..+++.+.
T Consensus 193 ~-~~~--~~-~---n~l~~~~-------~~~~p~l~~l~~~~~~----~Ga~-ga~~SGsG~~v~~l~~~~~~~~~~~~~ 253 (275)
T 1uek_A 193 G-EEP--PY-W---NSLEGPA-------FRLFPELKEVRGRMRA----LGLR-GVLMSGSGSAFFGLAEGPDHARRAAEA 253 (275)
T ss_dssp T-CCC--SC-C---BTTHHHH-------HHHCTHHHHHHHHHHH----TTCE-EEEECTTSSCEEEECSSHHHHHHHHHH
T ss_pred c-ccc--cc-c---cchHHHH-------HHhChHHHHHHHHHHh----CCCC-EEEEeccccCeEEEeCCHHHHHHHHHH
Confidence 7 543 22 2 3344322 3346777777777654 5886 667889999999999875333336666
Q ss_pred HHh
Q 014714 332 LLF 334 (420)
Q Consensus 332 l~~ 334 (420)
+.+
T Consensus 254 l~~ 256 (275)
T 1uek_A 254 LRA 256 (275)
T ss_dssp HTT
T ss_pred hhh
Confidence 553
No 14
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.93 E-value=3.7e-24 Score=209.84 Aligned_cols=273 Identities=16% Similarity=0.137 Sum_probs=178.0
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCc-eeEEEEEEcCCCCc-ceEEEcCc--cccC---CcchHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHL-CTTTTVAVSPSFDQ-DRMWLNGK--EISL---GGGRYQ 80 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L-~~~t~v~~~~~~~~-d~i~lnG~--~~~~---~~~r~~ 80 (420)
..++++||.+|.|+ |+|.+ | ++.++|+++|+ + +++++++..++. . .++...+. ..+. ..+.+.
T Consensus 5 ~~~~~~APgkinL~---Ge~~d-~--~g~~~l~~ai~---~~~~~v~v~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~v~ 74 (308)
T 2x7i_A 5 RKGYGESTGKIILI---GEHAV-T--FGEPAIAVPFN---AGKIKVLIEALESG-NYSSIKSDVYDGMLYDAPDHLKSLV 74 (308)
T ss_dssp CEEEEEEEEEEEEE---EBTTC-C--TTSCEEEEEEE---EEEEEEEEEECCTT-CCCEEEEEECSSCCCCTTSCHHHHH
T ss_pred cceEEEEeeEEEEE---ecCee-e--cCCeEEEEEEc---CCEEEEEEEECCCC-CeeEEEecCCCCChhhhhHHHHHHH
Confidence 34889999999997 77765 4 57889999998 6 488888775421 2 23332211 1111 123444
Q ss_pred HHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 014714 81 NCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG 160 (420)
Q Consensus 81 ~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~g 160 (420)
++++.+++ . ..+++|+++++||.++|||||||.++|++.|++++++++++.++|.++|.++
T Consensus 75 ~~~~~~~~---~----------------~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~ 135 (308)
T 2x7i_A 75 NRFVELNN---I----------------TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWA 135 (308)
T ss_dssp HHHHHHTT---C----------------CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHh---h----------------CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45443322 1 1278999999999999999999999999999999999999999999999887
Q ss_pred c--------C-ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhc---cch
Q 014714 161 S--------G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE---TSL 228 (420)
Q Consensus 161 s--------G-sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~---ts~ 228 (420)
+ | +.+.|++||++.++.+. ..++++.+ ++++ +++++.. ..++|.+.++.+.. ..+
T Consensus 136 E~~~~g~~sG~d~~~~~~g~~~~~~~g~-------~~~~~~~~---~~~~--~vi~~~~-~~~sT~~~~~~l~~~~~~~~ 202 (308)
T 2x7i_A 136 EQIAHGKPSGIDTQTIVSGKPVWFQKGH-------AETLKTLS---LDGY--MVVIDTG-VKGSTRQAVHDVHKLCEDPQ 202 (308)
T ss_dssp HHHHHSSCCHHHHHHHHHTSCEEEETTE-------EEECSCCC---BSSE--EEEEECC-C--CCSCCCC--------CC
T ss_pred HHHHCCCCchHHHHHhhCCceEEEEcCC-------CceEeccC---CCce--EEEEECc-CCCCHHHHHHHHHHHHhcCc
Confidence 3 4 33456789998776432 13344321 2333 3334433 34555544332211 111
Q ss_pred hHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEe
Q 014714 229 LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYT 308 (420)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~t 308 (420)
.... +.+ ...++.+++.+|.++|++.|++++. .+|..+++ + ....|...++++.+++ .|+. ++.+
T Consensus 203 ~~~~-~~~-~~~~~~~~~~al~~~d~~~l~~~~~----~~~~~~~~-~---~~~~p~l~~l~~~~~~----~Ga~-ga~~ 267 (308)
T 2x7i_A 203 YMSH-VKH-IGKLVLRASDVIEHHKFEALADIFN----ECHADLKA-L---TVSHDKIEQLMKIGKE----NGAI-AGKL 267 (308)
T ss_dssp HHHH-HHH-HHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHH-H---SCCCHHHHHHHHHHHH----TTCS-EEEE
T ss_pred hHHH-HHH-HHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHH-h---CCCCHHHHHHHHHHHH----CCCc-EEEe
Confidence 1111 232 2346778889999999999999863 46666654 1 2346777777777654 5887 6667
Q ss_pred eCCCC--ceEEEeeccchHHHHHHHHHhhCC
Q 014714 309 FDAGP--NAVLIARNRKIATELLQRLLFFFP 337 (420)
Q Consensus 309 sgAGP--tv~~i~~~~~~~~~v~~~l~~~f~ 337 (420)
||||| ++++++++++..+++.+.+.+.+.
T Consensus 268 sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~~ 298 (308)
T 2x7i_A 268 TGAGRGGSMLLLAKDLPTAKNIVKAVEKAGA 298 (308)
T ss_dssp SBTTTCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred eccCCCcEEEEEeCChhHHHHHHHHHHhCCC
Confidence 79999 999999874433348888887764
No 15
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.93 E-value=8.1e-24 Score=209.80 Aligned_cols=266 Identities=15% Similarity=0.113 Sum_probs=173.6
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCc--cccCC-cchHHHHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK--EISLG-GGRYQNCLKE 85 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~--~~~~~-~~r~~~~l~~ 85 (420)
+++++||..|.++.|+ .. .++.++|+++|+ ++++++++.++ ..++..++. ..+.. ++.+..++..
T Consensus 21 mi~~~APgkinL~GeH---~~---~~Gg~~l~~aI~---~~~~v~v~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (321)
T 4hac_A 21 MVSCSAPGKIYLFGEH---AV---VYGETAIACAVE---LRTRVRAELND---SITIQSQIGRTGLDFEKHPYVSAVIEK 88 (321)
T ss_dssp CEEEEEEEEEEEECTT---TG---GGTCCEEEEEEE---EEEEEEEEECS---SEEEEETTEEESSCTTTSHHHHHHHHH
T ss_pred EEEEEeeEEEEEEccC---EE---EcCCEEEEEEec---cCEEEEEEECC---CEEEEECCCCcccccchhHHHHHHHHH
Confidence 3778899999988443 32 246789999999 89999887643 234444332 12222 2222223332
Q ss_pred HHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc----
Q 014714 86 IRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---- 161 (420)
Q Consensus 86 ~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gs---- 161 (420)
+++. + ...+++|+++++||.++|||||||.++|++.|++++++++++.++|.++|.+++
T Consensus 89 l~~~-~----------------~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~ 151 (321)
T 4hac_A 89 MRKS-I----------------PINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQ 151 (321)
T ss_dssp HTTT-S----------------CCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHh-C----------------CCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 2221 1 135799999999999999999999999999999999999999999999998765
Q ss_pred --C---ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhh--c-cchh-HHH
Q 014714 162 --G---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESV--E-TSLL-LQH 232 (420)
Q Consensus 162 --G---sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~--~-ts~~-~~~ 232 (420)
+ +.+.|++||++.. +. + +++. +|++++++ +.|. ...+|.+..+... + ..+. ++.
T Consensus 152 g~~~~~D~~~~~~Gg~~~~--~~---~-----~~l~----~p~~~~vl-v~p~--~~~sT~~~~~~~~~l~~~~~~~~~~ 214 (321)
T 4hac_A 152 GAASPTDTYVSTFGGVVTI--PE---R-----RKLK----TPDCGIVI-GDTG--VFSSTKELVANVRQLRESYPDLIEP 214 (321)
T ss_dssp SCCCSHHHHHHHHCSEEEE--TT---C-----CEEC----CCCCEEEE-EECC--CCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCcHHHHHHHHcCCeEEE--cC---C-----ceec----cCCCEEEE-EECC--CCccHHHHHHHHHHHHhcCHHHHHH
Confidence 2 5678999999865 32 2 1232 24556554 4444 2445544433321 1 1111 222
Q ss_pred HHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCC
Q 014714 233 RAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG 312 (420)
Q Consensus 233 ~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAG 312 (420)
.+.+ ....+..++.+|.++|++.|++++..+++.+.. ....+|...++++.+++ .|++ ++.+||||
T Consensus 215 ~~~~-~~~~~~~~~~al~~~d~~~lg~~~~~~~~~~~~--------~~v~~p~l~~l~~~a~~----~Ga~-ga~~SGaG 280 (321)
T 4hac_A 215 LMTS-IGKISRIGEQLVLSGDYASIGRLMNVNQGLLDA--------LGVNILELSQLIYSARA----AGAF-GAKITGAG 280 (321)
T ss_dssp HHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------HTCCCHHHHHHHHHHHH----TTCS-EEEECSSC
T ss_pred HHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHH----CCCC-EEEECccC
Confidence 2222 233466788999999999999987543222221 12346777777777654 6888 56677999
Q ss_pred C--ceEEEeeccchHHHHHHHHHhh
Q 014714 313 P--NAVLIARNRKIATELLQRLLFF 335 (420)
Q Consensus 313 P--tv~~i~~~~~~~~~v~~~l~~~ 335 (420)
| +++++++++...+ +.+.|++.
T Consensus 281 ~GG~v~al~~~~~a~~-~~~~l~~~ 304 (321)
T 4hac_A 281 GGGCMVALTAPEKCNQ-VAEAVAGA 304 (321)
T ss_dssp SSSEEEEEECSTTHHH-HHHHHHHT
T ss_pred CCCEEEEEcCHHHHHH-HHHHHHhC
Confidence 9 8999995554444 88888764
No 16
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.93 E-value=2.7e-24 Score=214.18 Aligned_cols=282 Identities=13% Similarity=0.118 Sum_probs=178.8
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccc---------c--CC-cc
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI---------S--LG-GG 77 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~---------~--~~-~~ 77 (420)
++++||..|.++ |++.+-+.+ .+|+++|+ ++++++++..+ .+++.+.+... + .. .+
T Consensus 2 ~~~~aP~ki~L~---Ge~~d~~~~---~~l~~ai~---~~~~v~v~~~~---~~~i~i~~~~~~~~~~~l~~~~~~~~~~ 69 (350)
T 2cz9_A 2 IKVKSPGRVNLI---GEHTDYTYG---YVMPMAIN---LYTKIEAEKHG---EVILYSEHFGEERKFSLNDLRKENSWID 69 (350)
T ss_dssp EEEEEEEEEEEE---CTTCGGGTC---EEEEEEEE---EEEEEEEEEES---SEEEEETTTTEEEEECTTCCCCCSSTHH
T ss_pred eEEEeccEEEEe---ecChhhCCC---EEEEEEee---ceEEEEEEECC---CCeEEEEECCCCccccccCCCCCCcHHH
Confidence 568899999986 888774443 48999998 89998887653 23455533221 1 11 23
Q ss_pred hHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 014714 78 RYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIA 157 (420)
Q Consensus 78 r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iA 157 (420)
.++.+++.+++. +. ...+++|+++++||.++|||||||.++|++.|++++++++++.++|.++|
T Consensus 70 ~~~~~~~~l~~~-~~---------------~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la 133 (350)
T 2cz9_A 70 YVKGIFWVLKES-DY---------------EVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLA 133 (350)
T ss_dssp HHHHHHHHHHHT-TC---------------CCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhc-CC---------------CCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344444444432 11 12578999999999999999999999999999999999999999999999
Q ss_pred HhccC---ccccccccCeEEEecccC----CCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhh-------
Q 014714 158 RQGSG---SACRSLFGGFVKWILGKE----GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES------- 223 (420)
Q Consensus 158 r~gsG---sa~~sl~GG~V~~~~g~~----~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~------- 223 (420)
.+++. +.+.+++|+++.+..+.. .|.......+++.+ +++++++ +.|.....+++.. ++..
T Consensus 134 ~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~~~l~~~---~~~~~vl-~~~~~~~~~~t~~-~~~r~~~~~~a 208 (350)
T 2cz9_A 134 KKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFP---KDVSILV-FYTGVRRELASSE-YAERKHIAEES 208 (350)
T ss_dssp HHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECC---TTEEEEE-EECSCC----CHH-HHHHHHHHHHH
T ss_pred HHHHHHhcCCCccchhHHHHHhcCCCeEEEEecCCCcEEEEcCC---CCcEEEE-EECCCCCccccch-HHHHHHHHHHH
Confidence 88774 222344444432211100 00011234555432 4666554 4454433344432 2210
Q ss_pred ---h-----c---------cchhHHHHHhhhc--hHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCc
Q 014714 224 ---V-----E---------TSLLLQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMND 284 (420)
Q Consensus 224 ---~-----~---------ts~~~~~~~~~~~--~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~ 284 (420)
+ . ..+.+..+..+++ ..++..++.+|.++|++.|++++..+++.||+.+. ..+|
T Consensus 209 ~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~-------~~~p 281 (350)
T 2cz9_A 209 LKILGKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE-------VSCK 281 (350)
T ss_dssp HHHHTCSCGGGCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------CCCH
T ss_pred HHHhChhhhhhCCHHHHhhCCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc-------CCCH
Confidence 0 0 0110111122211 23688899999999999999998777778887432 2467
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEeeCCC--CceEEEeeccchHHHHHHHHHhhCC
Q 014714 285 TSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFFP 337 (420)
Q Consensus 285 ~s~~ii~~v~~~~~~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~l~~~f~ 337 (420)
...++++.+++ .|+. ++.+|||| |++++++++++..+ +.+.|.+.|.
T Consensus 282 ~l~~l~~~~~~----~Ga~-ga~lsGaG~G~~v~~l~~~~~~~~-~~~~l~~~~~ 330 (350)
T 2cz9_A 282 ELDFFVERALK----LGAY-GARLTGAGFGGSAIALVDKEDAET-IGEEILREYL 330 (350)
T ss_dssp HHHHHHHHHHH----TTCS-EEEECSSCSSSEEEEEEEGGGHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCC-EEEEecCCCceEEEEEEchhhHHH-HHHHHHHHHH
Confidence 77777777664 5887 56677988 99999999876555 8888877653
No 17
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.93 E-value=2.5e-25 Score=216.95 Aligned_cols=250 Identities=11% Similarity=0.071 Sum_probs=167.4
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc--ccCCcchHHHHHHHHH
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--ISLGGGRYQNCLKEIR 87 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~--~~~~~~r~~~~l~~~r 87 (420)
+++.|.+|+.+ .-.|+|.++|| .-.|+.++++ +|++++++..+ .+++.+.+.. .+.+.+.+.++++.++
T Consensus 5 ~~apaKinL~L-~v~g~~~dGyh--~l~sl~~ai~---l~~~v~v~~~~---~~~i~i~~~~~~~~~~~nlv~~a~~~~~ 75 (283)
T 2ww4_A 5 WPSPAKLNLFL-YITGQRADGYH--TLQTLFQFLD---YGDTISIELRD---DGDIRLLTPVEGVEHEDNLIVRAARLLM 75 (283)
T ss_dssp EEEEEEEEEEE-EEEEECTTSCE--EEEEEEEEEE---EEEEEEEEEES---SSCEEECSCBTTBCGGGSHHHHHHHHHH
T ss_pred ccCceeEEeee-eccCCCCCCCc--ceEEEEEECC---CCcEEEEEECC---CCcEEEEeCCCCCCCcccHHHHHHHHHH
Confidence 34566666665 55799999888 4679999998 99999998754 2356665532 2222456777888777
Q ss_pred HHc------cccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 014714 88 SRA------CDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS 161 (420)
Q Consensus 88 ~~~------~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gs 161 (420)
+.+ +. ..+++|+++++||.++|||||||+++|++.|++++++++++.++|.++|.+.+
T Consensus 76 ~~~~~~~~~g~----------------~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e 139 (283)
T 2ww4_A 76 KTAADSGRLPT----------------GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLG 139 (283)
T ss_dssp HHHHHTTCSCT----------------TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTC
T ss_pred HHhhhhcccCC----------------CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 665 32 25799999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHH
Q 014714 162 GSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKR 241 (420)
Q Consensus 162 Gsa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~ 241 (420)
+++++|++||++. ..+. |. ...+++ .|+++++ ++.|. ..++|.+.++. .. .+ .... ...
T Consensus 140 ~dv~~~~~gg~~~-~~g~---g~--~~~~l~----~~~~~~v-l~~p~--~~~sT~~~~~~-~~-~~-----~~~~-~~~ 198 (283)
T 2ww4_A 140 ADVPVFVRGHAAF-AEGV---GE--ILTPVD----PPEKWYL-VAHPG--VSIPTPVIFKD-PE-LP-----RNTP-KRS 198 (283)
T ss_dssp TTHHHHHHTBCEE-EETT---TT--EEEECC----CCCCEEE-EECCS--CCCCHHHHHTC-TT-SC-----CCCC-CCC
T ss_pred CCHHHhhcCCeEE-EEec---Cc--cceEcC----CCCcEEE-EEeCC--CCCchHHHHhc-cc-cc-----ccch-HHH
Confidence 9999999999985 4443 11 245553 3566654 34443 35665554442 21 11 0110 011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeec
Q 014714 242 IVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARN 321 (420)
Q Consensus 242 ~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~ 321 (420)
+.+|.++++ + |.++. +...+.|...++++.+++ .| ++.+|||||++|+++.+
T Consensus 199 ----l~~l~~~~~-------~---nd~~~-------~~~~~~p~l~~i~~~~~~----~G---~a~~SGsG~tvf~l~~~ 250 (283)
T 2ww4_A 199 ----IETLLKCEF-------S---NDCEV-------IARKRFREVDAVLSWLLE----YA---PSRLTGTGACVFAEFDT 250 (283)
T ss_dssp ----HHHHHTSCC-------C---BTTHH-------HHHHHCHHHHHHHHHHHT----TS---CEEECTTSSCEEEEESS
T ss_pred ----HHHHHhhhh-------c---CchHH-------HHHhcChHHHHHHHHHHH----cC---CceECCcccceEEEeCC
Confidence 123444442 1 33332 334567888888877754 46 35678999999999986
Q ss_pred cchHHHHHHHHH
Q 014714 322 RKIATELLQRLL 333 (420)
Q Consensus 322 ~~~~~~v~~~l~ 333 (420)
++..+++.+.+.
T Consensus 251 ~~~a~~~~~~l~ 262 (283)
T 2ww4_A 251 ESEARQVLEQAP 262 (283)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhh
Confidence 543333555443
No 18
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.92 E-value=8.1e-23 Score=209.41 Aligned_cols=280 Identities=16% Similarity=0.154 Sum_probs=180.2
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc--------cc--------
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--------IS-------- 73 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~--------~~-------- 73 (420)
++++||..|.|+ |.+.+.+ +.++|+++|+ ++++++++..++ ...++...+.. .+
T Consensus 49 ~~~~APgkv~L~---Geh~d~~---G~~~l~~aI~---l~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (419)
T 1pie_A 49 EYFFSPGRINLI---GEHTDYN---GGYVFPASIT---IGTTGLARLRED-KKVKLYSENFPKLGVIEFDLDEVEKKDGE 118 (419)
T ss_dssp EEEEEEEEEEEE---CCSCTTT---TCEEEEEEEE---EEEEEEEEECSS-SEEEEEETTCGGGCCEEEETTCTTSCCTT
T ss_pred EEEEeeEEEEEc---ccceeeC---CCEEEEEEEc---ccEEEEEEECCC-CEEEEEECCCCCcceeEEecccccCCCCc
Confidence 678999999997 7776643 4679999998 899998876542 12233333211 00
Q ss_pred CCcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHH
Q 014714 74 LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQL 153 (420)
Q Consensus 74 ~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL 153 (420)
...+.+..+++.+++.... ...+++|.++++||.++|||||||.++|++.|++++++++++.++|
T Consensus 119 ~~~n~v~~~~~~l~~~g~~---------------~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el 183 (419)
T 1pie_A 119 LWSNYVKGMIVMLKGAGYE---------------IDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLEL 183 (419)
T ss_dssp CTHHHHHHHHHHHHHTTCC---------------CCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhCCC---------------CCCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 0123455565655543100 0257899999999999999999999999999999999999999999
Q ss_pred HHHHHhcc--------C--ccccccccC--eEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCch----
Q 014714 154 SAIARQGS--------G--SACRSLFGG--FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSST---- 217 (420)
Q Consensus 154 ~~iAr~gs--------G--sa~~sl~GG--~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst---- 217 (420)
.++|.+++ | +.++|+||| .+++..+.+ ....+++.+ ++++++++ +.+.. ..++.
T Consensus 184 ~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~-----~~~~~l~~~--~~~~~~vl-~~~~~--~~~t~~~~y 253 (419)
T 1pie_A 184 VQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT-----LKYEMVPVE--LRDYDIVI-MNTNK--PRALTESKY 253 (419)
T ss_dssp HHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTT-----CCEEEEECC--CTTEEEEE-EECCC--CCCTTCHHH
T ss_pred HHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCC-----CceEEeecC--CCCcEEEE-EECCC--ccccccchH
Confidence 99998753 3 556899998 444433321 124555421 24666554 44443 22321
Q ss_pred -------HHhhhhhcc----------ch-h------------HHHHHhhhc--hHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 014714 218 -------TGMRESVET----------SL-L------------LQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADS 265 (420)
Q Consensus 218 -------~~m~~~~~t----------s~-~------------~~~~~~~~~--~~~~~~l~~Al~~~D~~~f~~~~~~ds 265 (420)
+...+.+.. .+ . ...+..+++ ..++..++.+|.++|++.|+++|...+
T Consensus 254 ~~r~~~~~~a~~~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~ 333 (419)
T 1pie_A 254 NERFAETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASH 333 (419)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111111110 00 0 111222211 236888999999999999999986655
Q ss_pred hhhhhhccccCCCccccCchHHHHHHHHHHHHHhc-CCCcEEEeeCCC--CceEEEeeccchHHHHHHHHHhhCC
Q 014714 266 NQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFFP 337 (420)
Q Consensus 266 n~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~-Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~l~~~f~ 337 (420)
+.++..+ ...+|...++++.+.+ . |++ ++.++||| |++++|++++...+ +.+.|.+.|.
T Consensus 334 ~~l~~~~-------~~~~p~l~~l~~~a~~----~~Ga~-ga~lsGaG~Gg~v~al~~~~~a~~-~~~~l~~~~~ 395 (419)
T 1pie_A 334 ASLKDDY-------EVTGLELDTLAETAQK----QAGVL-GARMTGAGFGGCAIALVAHDNVSA-FRKAVGQVYE 395 (419)
T ss_dssp HHHHHTS-------CCCCHHHHHHHHHHHH----STTEE-EEEECSSCSSSEEEEEEEGGGHHH-HHHHHHHHHH
T ss_pred HHHHHhh-------CCCCHHHHHHHHHHHh----cCCCc-eeeEecCCCCeEEEEEEchhhHHH-HHHHHHHHHH
Confidence 5555432 1246777777776654 4 887 55677888 99999998866555 8888877653
No 19
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.91 E-value=1.9e-22 Score=198.40 Aligned_cols=271 Identities=16% Similarity=0.202 Sum_probs=172.8
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc------------ccCC-
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE------------ISLG- 75 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~------------~~~~- 75 (420)
.++++||..|.++- .+-+ ..++++|+++|+ +|++++++..++ +.+.+.+.. .+..
T Consensus 5 ~~~~~APgki~L~g---eh~~---~~G~~~l~~ai~---~~~~v~v~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~ 72 (317)
T 1kkh_A 5 HMIIETPSKVILFG---EHAV---VYGYRAISMAID---LTSTIEIKETQE---DEIILNLNDLNKSLGLNLNEIKNINP 72 (317)
T ss_dssp CEEEEEEEEEEEEC---TTGG---GGTCCEEEEEEE---EEEEEEEEECCS---SEEEEEETTTTEEEEEETTTGGGCCG
T ss_pred CEEEEccEEEEEEc---CCee---EcCCEEEEEEec---CeEEEEEEECCC---CeEEEEeCCCCCceEEEeccCCccCc
Confidence 46778888888863 2222 136779999998 899999876542 345443221 1111
Q ss_pred c--chHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHH
Q 014714 76 G--GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQL 153 (420)
Q Consensus 76 ~--~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL 153 (420)
+ +.+..+++.++........ ....+++|+++++||.++|||||||.++|++.|++++++++++.++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l 141 (317)
T 1kkh_A 73 NNFGDFKYCLCAIKNTLDYLNI-----------EPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEI 141 (317)
T ss_dssp GGSGGGHHHHHHHHHHHHHTTC-----------CCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcc-----------cCCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 1 2244555555443111000 00257999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc--------C-ccccccccCeEEEecccCCCCCCceEEEccCCCCCCC-----ceEEEEEECCCCCccCchHH
Q 014714 154 SAIARQGS--------G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWND-----LVIIIAVVSSRQKETSSTTG 219 (420)
Q Consensus 154 ~~iAr~gs--------G-sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~-----l~~vvlvv~~~~k~vsst~~ 219 (420)
.++|.+++ | ++++|++||++.+ .+. . .++++. .||+ ++++ ++.|. ...+|.+
T Consensus 142 ~~~a~~~E~~~~g~~sg~D~~~~~~Gg~~~~-~~~----~---~~~~~~--~~~~~l~~~~~~v-l~~~~--~~~~T~~- 207 (317)
T 1kkh_A 142 AKLGYMVEKEIQGKASITDTSTITYKGILEI-KNN----K---FRKIKG--EFEEFLKNCKFLI-VYAEK--RKKKTAE- 207 (317)
T ss_dssp HHHHHHHHHHHSSSCCSHHHHHHHHCSEEEE-SSS----C---EEEECH--HHHHHHHTCCEEE-EEEEC--CCSCHHH-
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHhCCeEEE-cCC----C---ceEecC--CcccccccCcEEE-EEECC--CcCcHHH-
Confidence 99998763 4 6788999999876 321 1 344431 1332 2444 44443 2444444
Q ss_pred hhhhhccchhHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHh
Q 014714 220 MRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299 (420)
Q Consensus 220 m~~~~~ts~~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~ 299 (420)
+.+.++........+. .....+.+++..+|++.|++++... |.... .+ .+..|...++++.+++
T Consensus 208 ~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~d~~~l~~~~~~~----~~~~~-~~---~~~~p~l~~~~~~~~~---- 271 (317)
T 1kkh_A 208 LVNEVAKIENKDEIFK----EIDKVIDEALKIKNKEDFGKLMTKN----HELLK-KL---NISTPKLDRIVDIGNR---- 271 (317)
T ss_dssp HHHHHHTCTTHHHHHH----HHHHHHHHHHHCCSHHHHHHHHHHH----HHHHH-TT---TCCCHHHHHHHHHHHH----
T ss_pred HHHHHHHhhccHHHHH----HHHHHHHHHHHcCCHHHHHHHHHHH----HHHHH-hc---CCCCHHHHHHHHHHHh----
Confidence 4433332111122221 2233467889999999999987432 33222 11 2346788887777765
Q ss_pred cCCCcEEEeeCCCC--ceEEEeeccchHHHHHHHHHhh
Q 014714 300 VGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFF 335 (420)
Q Consensus 300 ~Ga~~~a~tsgAGP--tv~~i~~~~~~~~~v~~~l~~~ 335 (420)
.| . ++.+||||| ++++++++++..+ +.+.+++.
T Consensus 272 ~G-~-ga~~sGaG~GG~v~~l~~~~~~~~-~~~~l~~~ 306 (317)
T 1kkh_A 272 FG-F-GAKLTGAGGGGCVIILVNEEKEKE-LLKELNKE 306 (317)
T ss_dssp HS-S-EEEECSSSSSEEEEEECCGGGHHH-HHHHHHTS
T ss_pred cC-c-eeEEeecCCCCEEEEEechhhHHH-HHHHHHhc
Confidence 47 6 666779999 9999998777544 88877753
No 20
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.90 E-value=3.3e-22 Score=199.54 Aligned_cols=283 Identities=12% Similarity=0.090 Sum_probs=184.4
Q ss_pred eEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccc--cC----CcchHHH
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI--SL----GGGRYQN 81 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~--~~----~~~r~~~ 81 (420)
|+++++||..|-++ |.+-.. .|++++|+++|+ ++++++++.++ ..++.-++... +. ..+.+..
T Consensus 2 mmi~~~aPgkv~L~---GeH~v~--y~G~~~l~~Ai~---~~~~v~v~~~~---~~~i~s~~~~~~~~~~~~~~~~~v~~ 70 (337)
T 2pg9_A 2 MMIAVKTCGKLYWA---GEYAIL--EPGQLALIKDIP---IYMRAEIAFSD---SYRIYSDMFDFAVDLRPNPDYSLIQE 70 (337)
T ss_dssp -CEEEEEEEEEEEE---CTTGGG--STTCEEEEEEEE---EEEEEEEEECS---SCEEEETTSSSCBCSSCCTTTHHHHH
T ss_pred ceEEEeeCceEEEe---ccceEe--cCCCEEEEEEcc---ccEEEEEEeCC---cEEEecCCCCceeeecCCCCcHHHHH
Confidence 35789999999997 555444 368999999999 88888887654 23444333211 11 1245666
Q ss_pred HHHHHHHHccccccccccccccccccccccEEEEEecCCCCc---cccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 014714 82 CLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA---AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR 158 (420)
Q Consensus 82 ~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a---aGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr 158 (420)
+++.++++++..+ ....+++|.++++||.+ +|||||||.++|++.|++++++++++.++|.++|.
T Consensus 71 ~i~~~~~~~~~~g------------~~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~ 138 (337)
T 2pg9_A 71 TIALMGDFLAVRG------------QNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTS 138 (337)
T ss_dssp HHHHHHHHHHHTT------------CCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC------------CCCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 7777777654211 01357999999999999 99999999999999999999999999999999997
Q ss_pred hcc--------C-ccccccccCeEEEec-ccCC---------------CCCCceEEEccCCCCCCCceEEEEEECCCCCc
Q 014714 159 QGS--------G-SACRSLFGGFVKWIL-GKEG---------------NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKE 213 (420)
Q Consensus 159 ~gs--------G-sa~~sl~GG~V~~~~-g~~~---------------~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~ 213 (420)
+.+ | +.+.|+|||++.+.. +... .......++++.+ ++++++++ .+. ..
T Consensus 139 ~~E~~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~---~~~~lvl~-~~~--~~ 212 (337)
T 2pg9_A 139 AVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT---LECDFLVG-WTK--EV 212 (337)
T ss_dssp HHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC---SCCEEEEE-ECC--CC
T ss_pred HHHHHhCCCCCHHHHHHHHhCCEEEEecCChHHhhhhhcccchhhhcccccccceeeecCC---CCceEEEE-ECC--Cc
Confidence 652 2 567899999987642 1100 0001134555432 35565544 343 23
Q ss_pred cCchHHhhhhhccchhHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHH
Q 014714 214 TSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYV 293 (420)
Q Consensus 214 vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v 293 (420)
.+|. .+.+.++... .+..+.+ ...++..++.||.++|++.|++++.+....++... + ...+|...++++.+
T Consensus 213 ~~T~-~~~~~~~~~~-~~~~~~~-~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~----~--~v~~p~l~~l~~~a 283 (337)
T 2pg9_A 213 AVSS-HMVQQIKQNI-NQNFLTS-SKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLS----T--DIYTPLLRQLKEAS 283 (337)
T ss_dssp CCHH-HHHHHHGGGC-CHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----T--TTCCHHHHHHHHTT
T ss_pred cchH-HHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----C--cCCCHHHHHHHHHH
Confidence 4444 4444343211 1222332 25577889999999999999998865444444321 0 12456666666655
Q ss_pred HHHHHhcCCCcEEEeeCCC--CceEEEeeccchHHHHHHHHHh
Q 014714 294 ERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLF 334 (420)
Q Consensus 294 ~~~~~~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~l~~ 334 (420)
+ ..|+. +.+|||| |++++++++++..+++.+.+++
T Consensus 284 ~----~~Ga~--ak~sGaGgGg~vial~~~~~~~~~~~~~l~~ 320 (337)
T 2pg9_A 284 Q----DLQAV--AKSSGAGGGDCGIALSFDAQSTKTLKNRWAD 320 (337)
T ss_dssp T----TSSEE--EEECTTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred H----HCCCE--EEEeCCCCccEEEEEECCHHHHHHHHHHHHH
Confidence 4 36875 4566999 9999999876544447666655
No 21
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.90 E-value=1.8e-21 Score=198.08 Aligned_cols=277 Identities=14% Similarity=0.124 Sum_probs=173.7
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc--------ccC-------
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE--------ISL------- 74 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~--------~~~------- 74 (420)
++++||..|.|+ |.+-+ |+. -.+|+++++ ++++++++..++ ...++...+.. .+.
T Consensus 37 ~~~~APgkv~L~---Geh~D-y~~--~~~l~~ai~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 106 (399)
T 1wuu_A 37 LAVSAPGRVNLI---GEHTD-YNQ--GLVLPMALE---LMTVLVGSPRKD-GLVSLLTTSEGADEPQRLQFPLPTAQRSL 106 (399)
T ss_dssp EEEEEEEEEEEE---CTTCG-GGT--CEEEEEEEE---EEEEEEEEEETT-CEEEEEECCSSSCSCSEEEEECCCSSCCC
T ss_pred EEEEeeeeEEEe---ccccc-cCC--CEEEeEEec---ccEEEEEEECCC-CeEEEEECCCCCccccceEEecCcccccc
Confidence 678999999997 88776 653 349999998 899999876542 12233332211 001
Q ss_pred ------CcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCC
Q 014714 75 ------GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKE 148 (420)
Q Consensus 75 ------~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~l 148 (420)
..+.+..+++.+ .+. ...+++|.++++||.++|||||||.++|++.|+++++++++
T Consensus 107 ~~~~~~~~n~v~~a~~~l---~~~---------------~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l 168 (399)
T 1wuu_A 107 EPGTPRWANYVKGVIQYY---PAA---------------PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG 168 (399)
T ss_dssp CCCSSGGGHHHHHHHHHC---SSS---------------CCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCS
T ss_pred ccCCCCHHHHHHHHHHHh---cCC---------------CCCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCC
Confidence 012333333332 110 12478999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhc--------cC--ccccccccCe--EEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCc
Q 014714 149 NQSQLSAIARQG--------SG--SACRSLFGGF--VKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSS 216 (420)
Q Consensus 149 s~~eL~~iAr~g--------sG--sa~~sl~GG~--V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vss 216 (420)
+.++|.++|.++ +| +.+.|++||+ +.+..+. + ....+++.+ +++++++++. |. ...+|
T Consensus 169 ~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~---~--~~~~~~~~~--~~~~~~vl~~-~~--~~~~t 238 (399)
T 1wuu_A 169 TIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCR---S--LETSLVPLS--DPKLAVLITN-SN--VRHSL 238 (399)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETT---T--CCEEEEECC--CSSEEEEEEE-EE--EEC--
T ss_pred CHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecC---C--CceEEecCC--CCCeEEEEEE-CC--Ccccc
Confidence 999999999875 23 4557899994 3322222 1 124455421 2466665443 32 22333
Q ss_pred hH--------Hhh---hhhc-----c-------------chhHHHHHhhhc--hHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 014714 217 TT--------GMR---ESVE-----T-------------SLLLQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADS 265 (420)
Q Consensus 217 t~--------~m~---~~~~-----t-------------s~~~~~~~~~~~--~~~~~~l~~Al~~~D~~~f~~~~~~ds 265 (420)
.. +++ +.+. . .+....+..+++ ..++..++.+|.++|++.|+++|..++
T Consensus 239 ~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h 318 (399)
T 1wuu_A 239 ASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESH 318 (399)
T ss_dssp CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 111 1110 0 000111122221 235888999999999999999876544
Q ss_pred hhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCC--CceEEEeeccchHHHHHHHHHhhC
Q 014714 266 NQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFF 336 (420)
Q Consensus 266 n~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~l~~~f 336 (420)
+.++..+ ...+|...++++.+++. .|+. ++.++||| |+++++++++...+ +.+.|.+.|
T Consensus 319 ~~l~~~~-------~~~~p~l~~l~~~a~~~---~Ga~-ga~~sGaG~Gg~v~~l~~~~~~~~-~~~~l~~~~ 379 (399)
T 1wuu_A 319 RSLRDDY-------EVSCPELDQLVEAALAV---PGVY-GSRMTGGGFGGCTVTLLEASAAPH-AMRHIQEHY 379 (399)
T ss_dssp HHHHHTS-------CCCCHHHHHHHHHHHTS---TTEE-EEEECSSCSEEEEEEEEEGGGHHH-HHHHHHHHC
T ss_pred HHHHHHh-------cCCCHHHHHHHHHHHhc---CCce-EEeeecCCCccEEEEEEccchHHH-HHHHHHHHh
Confidence 4444322 23456777776666531 4876 55677998 99999999866555 888888877
No 22
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=8.9e-22 Score=197.93 Aligned_cols=287 Identities=13% Similarity=0.157 Sum_probs=162.6
Q ss_pred eEEEEEecceeEEEeeeccccCCC--CCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCc----cc--------c
Q 014714 8 LMVTAQTPTNIAVIKYWGKRDETL--ILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK----EI--------S 73 (420)
Q Consensus 8 ~~~~~~Ap~nIa~ikywGkrd~~~--~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~----~~--------~ 73 (420)
|+++++||..|.++.-|-.+.+-+ + ++ -+|+++++ ++++++++..++ ...++.-++. .. .
T Consensus 2 Mmi~~~APgRvnL~GehtD~~~~~~~~-gG-~vl~~AId---~~~~v~i~~~~d-~~i~i~s~~~~~~~~~~~~~~~~~~ 75 (357)
T 3k85_A 2 SLVRSKAPLRLGLAGGGSDVSPYSDIY-GG-LILNATIN---LYAYCTIEETNS-GRIEINAYDAQCCKSYLSMSQLEID 75 (357)
T ss_dssp -CEEEEEEEEEEEECTTTTSTTHHHHT-CE-EEEEEEEE---EEEEEEEEECSS-SEEEEEETTTTEEEEEECCSSCCCC
T ss_pred cEEEEECceEEEEecCCccCcchhhcC-CC-EEEEEEEe---CcEEEEEEECCC-CeEEEEECCCCceEEEecccccccc
Confidence 468899999999983222221000 1 12 28999999 889988877542 1222322221 01 1
Q ss_pred CCcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHH
Q 014714 74 LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQL 153 (420)
Q Consensus 74 ~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL 153 (420)
...+.+..+++.+++.... ...+++|.++++||.++|||||||.++|++.|++++++++++.++|
T Consensus 76 ~~~~~v~~~~~~l~~~~~~---------------~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l 140 (357)
T 3k85_A 76 GEASLIKGVYNRIIRDYRL---------------EPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYET 140 (357)
T ss_dssp SSSHHHHHHHHHHHHHTTC---------------CCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred chHHHHHHHHHHHHHhcCC---------------CCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 1245677777777665421 0357999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc--------C--ccccccccCeEEEecccCCCCCCceEEEccCCCCCC----CceEEEEEECCCCCccCchHH
Q 014714 154 SAIARQGS--------G--SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN----DLVIIIAVVSSRQKETSSTTG 219 (420)
Q Consensus 154 ~~iAr~gs--------G--sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp----~l~~vvlvv~~~~k~vsst~~ 219 (420)
.++|.+.+ | +...|.|||++..... ++......+++.+ .|. +++++ ++... .+.++++.
T Consensus 141 ~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~---~~~~~~~~~l~~~-~~~~~~l~~~lv--i~~t~-~~~~a~~~ 213 (357)
T 3k85_A 141 SRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFL---QNDLVIVNPLKMK-RWIVDELESSMV--LYFTG-RSRSSAAI 213 (357)
T ss_dssp HHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEE---TTTEEEEEEECCC-HHHHHHHHHTEE--EECC----------
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEe---CCCceeEEEEecC-hhhhhhcCceEE--EEECC-CcccHHHH
Confidence 99998765 4 3345789999854321 1111234455421 110 13333 34433 33344443
Q ss_pred hhhhhccch----hHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHH
Q 014714 220 MRESVETSL----LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER 295 (420)
Q Consensus 220 m~~~~~ts~----~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~ 295 (420)
.++.++... .+...+.. +.+++..++.||.++|++.|+++|.+ ..|......+ ..-+|...++++..
T Consensus 214 l~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~aL~~~d~~~lg~lm~~---~~~~l~~~~~---~vs~p~ld~l~~~a-- 284 (357)
T 3k85_A 214 INEQKKNTSEGNQTAIEAMHK-IKQSAIDTKLALLKGDVGEFARILGE---GWENKKKMAG---AITNPMIQEAFDVA-- 284 (357)
T ss_dssp ------------CCTTHHHHH-HHHHHHHHHHHHTTTCHHHHHHHHHH---HHHHTTC--------------CCSCTT--
T ss_pred HHHHHHHhhcCcHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHH---HHHHHHhcCC---CCCCHHHHHHHHHH--
Confidence 332221100 00011222 23578889999999999999998743 2333221101 01124444443333
Q ss_pred HHHhcCCCcEEEeeCCCCc--eEEEeeccchHHHHHHHHHhh
Q 014714 296 WNRSVGSPQVAYTFDAGPN--AVLIARNRKIATELLQRLLFF 335 (420)
Q Consensus 296 ~~~~~Ga~~~a~tsgAGPt--v~~i~~~~~~~~~v~~~l~~~ 335 (420)
+..|++ ++-++||||+ ++++++++..++ +.++|++.
T Consensus 285 --~~~Ga~-GaklsGaG~gG~vial~~~~~~~~-~~~~l~~~ 322 (357)
T 3k85_A 285 --TGAGAM-AGKVSGAGGGGFIMFVVEPTRKEE-VVRALNNL 322 (357)
T ss_dssp --TTSCCS-EEEECCCC---CEEEECCHHHHHH-HHHHHHTS
T ss_pred --HhcCCe-EeEecccCCCCEEEEEecHHHHHH-HHHHHHHC
Confidence 346988 5566799999 888887665555 88777653
No 23
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.87 E-value=4.2e-20 Score=186.33 Aligned_cols=286 Identities=12% Similarity=0.108 Sum_probs=182.3
Q ss_pred EEEEEecceeEEEeeeccccCCCCC-CCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccc--c------C-----
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLIL-PVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI--S------L----- 74 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~l-P~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~--~------~----- 74 (420)
+++++||..+-|+ |.+- .. |+.++|.++|+ ++++++++..++ .++...+... . .
T Consensus 6 ~i~~~APGrv~L~---GEh~---~~~~g~~~l~~Ai~---~~~~v~v~~~~~---~~i~s~~~~~~~~~~~~~~~~~~~~ 73 (365)
T 3k17_A 6 KLQVKIPGKLYVA---GEYA---VVESGHTAILTAVN---RYITLTLEDSER---NELWIPHYENPVSWPIGGELKPDGE 73 (365)
T ss_dssp CEEEEEEEEEEEE---CTTG---GGSTTCEEEEEEEE---EEEEEEEEECSS---CEEECTTCSSCBCCCTTSCCCCSCG
T ss_pred EEEEEecceEEEe---cccE---EecCCCEEEEEEcc---CcEEEEEEECCC---cEEEecCCCcceeeecccCCCCCCC
Confidence 5789999999997 4332 23 67889999999 788888876542 2444433110 0 0
Q ss_pred CcchHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCC----ccccccchHHHHHHHHHHHHHhCCCCCH
Q 014714 75 GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPT----AAGLASSAAGFACLVFSLAKLMNLKENQ 150 (420)
Q Consensus 75 ~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~----aaGLGSSAA~~aA~v~Al~~l~~l~ls~ 150 (420)
..+.+..+++.+.+++...+ ....+++|.++++||. ++|||||||.++|++.|++++|+++++.
T Consensus 74 ~~~yv~~~i~~~~~~~~~~g------------~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~ 141 (365)
T 3k17_A 74 HWTFTAEAINIATTFLKSEG------------IELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISM 141 (365)
T ss_dssp GGHHHHHHHHHHHHHHHHTT------------CCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred hHHHHHHHHHHHHHHHHhcC------------CCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCH
Confidence 01345566666665543211 1135789999999996 6799999999999999999999999999
Q ss_pred HHHHHHHHh--------ccC-ccccccccCeEEEecccC------CCC-----------CCceEEEccCCCCCCCceEEE
Q 014714 151 SQLSAIARQ--------GSG-SACRSLFGGFVKWILGKE------GNG-----------SDSLAVQLVDEEHWNDLVIII 204 (420)
Q Consensus 151 ~eL~~iAr~--------gsG-sa~~sl~GG~V~~~~g~~------~~g-----------~ds~a~~i~~~~~wp~l~~vv 204 (420)
++|.++|.+ ++| +.+.|+|||++.+..... .+. .+...++++.+ ++ +++
T Consensus 142 ~~l~~~a~~~E~~~~g~~~g~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~---~~-~ll- 216 (365)
T 3k17_A 142 LKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEP---VP-TFS- 216 (365)
T ss_dssp HHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCC---SS-EEE-
T ss_pred HHHHHHHHHHHHHhCCCCCcccHHHHhcCCEEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCC---cc-cEE-
Confidence 999999964 233 568899999988753210 000 01234455431 33 444
Q ss_pred EEECCCCCccCchHHhhhhhccc-----hhHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCc
Q 014714 205 AVVSSRQKETSSTTGMRESVETS-----LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPI 279 (420)
Q Consensus 205 lvv~~~~k~vsst~~m~~~~~ts-----~~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~ 279 (420)
++-+. ...+|.+..+ .+... ..+++.+.+ ...++..++.||.++|++.|+++|....+.++.... .+..
T Consensus 217 l~~t~--~~~sT~~~~~-~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v--~~~~ 290 (365)
T 3k17_A 217 VGWTG--TPVSTGKLVS-QIHAFKQEDSKNYQHFLTR-NNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGT--KAGV 290 (365)
T ss_dssp EEECS--CCCCHHHHHH-HHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--HHTC
T ss_pred EEECC--CccchHHHHH-HHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhh--hcCC
Confidence 33333 3444444333 33211 112223332 234678999999999999999998665556554221 1122
Q ss_pred cccCchHHHHHHHHHHHHHhcCCCcEEEeeCCC--CceEEEeeccchHHHHHHHHHhh
Q 014714 280 FYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFF 335 (420)
Q Consensus 280 ~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~l~~~ 335 (420)
...+|...++++..++ .|+. +-++||| +++++++++++..+++.+++++.
T Consensus 291 ~is~p~ld~l~~~a~~----~Ga~--ak~sGAGgGg~vial~~~~~~~~~l~~~l~~~ 342 (365)
T 3k17_A 291 NIETSLLKELADSAEN----MGGA--GKSSGSGGGDCGIAFSKTKELAEKLVNEWEKL 342 (365)
T ss_dssp CCSCHHHHHHHHHHHH----TTSE--EEECTTCSSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHh----cCCE--EEecCCCCCCEEEEEECCHHHHHHHHHHHHHC
Confidence 2356777777777654 5775 4566998 89999998765444477776653
No 24
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.85 E-value=2.6e-19 Score=181.82 Aligned_cols=275 Identities=14% Similarity=0.137 Sum_probs=163.3
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccc--cC------------
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI--SL------------ 74 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~--~~------------ 74 (420)
+++++||..|.++ |.+-+.+ +..+|.++|+ ++++++++..++ ...++...+... ..
T Consensus 5 ~~~~~APgrv~L~---Geh~d~~---g~~~l~~ai~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 74 (395)
T 1kvk_A 5 VLLVSAPGKVILH---GEHAVVH---GKVALAVALN---LRTFLVLRPQSN-GKVSLNLPNVGIKQVWDVATLQLLDTGF 74 (395)
T ss_dssp CEEEEEEEEEEEE---CTTGGGG---TCCEEEEEEE---EEEEEEEEECSS-SEEEEEETTTTEEEEEEHHHHHTSCC--
T ss_pred cEEEEeCeEEEEe---cCCeeeE---CCEeeeeEee---ccEEEEEEECCC-CeEEEEcCCCCceEEEEhHhhhhhhccc
Confidence 4779999999997 7766533 4779999998 899999887542 112222221100 00
Q ss_pred -------------------------Ccch-----HHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCcc
Q 014714 75 -------------------------GGGR-----YQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 124 (420)
Q Consensus 75 -------------------------~~~r-----~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aa 124 (420)
..+. +..+++.+++..+.. ....+++|.++++||.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~-------------~~~~g~~i~i~s~iP~g~ 141 (395)
T 1kvk_A 75 LEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ-------------RTLPSLDIMVWSELPPGA 141 (395)
T ss_dssp --------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTS-------------SSCCCEEEEEEESSCTTS
T ss_pred ccccccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccc-------------cCCCCEEEEEEecCCCCC
Confidence 0011 112222222222210 003579999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhCC-----CCC-------HHHHHHHHHh---------ccC---ccccccccCeEEEecccC
Q 014714 125 GLASSAAGFACLVFSLAKLMNL-----KEN-------QSQLSAIARQ---------GSG---SACRSLFGGFVKWILGKE 180 (420)
Q Consensus 125 GLGSSAA~~aA~v~Al~~l~~l-----~ls-------~~eL~~iAr~---------gsG---sa~~sl~GG~V~~~~g~~ 180 (420)
|||||||.++|++.|+++++++ +++ .+++.+|++. |.+ +.+.|++||++.+..+
T Consensus 142 GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~~-- 219 (395)
T 1kvk_A 142 GLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQG-- 219 (395)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSS--
T ss_pred CccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCcchHHhhhcceEEEcCC--
Confidence 9999999999999999999999 888 8666665432 333 3466999999876422
Q ss_pred CCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhc---c-chhHHHHHhhhchHHHHHHHHH-------H
Q 014714 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE---T-SLLLQHRAKEVVPKRIVQMEEA-------I 249 (420)
Q Consensus 181 ~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~---t-s~~~~~~~~~~~~~~~~~l~~A-------l 249 (420)
...+++. .+++++++ +.+. ...+|.+.++.... . ...++...+.+ ...+.++..+ +
T Consensus 220 ------~~~~l~~---~~~~~~vl-~~~~--~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~al 286 (395)
T 1kvk_A 220 ------KMSSLKR---LPALQILL-TNTK--VPRSTKALVAGVRSRLIKFPEIMAPLLTSI-DAISLECERVLGEMAAAP 286 (395)
T ss_dssp ------CEEECSC---CCCEEEEE-EECC--CCCCHHHHHHHHHHHHHHSHHHHHHHHHHH-HHHHHHHHHHHHHHTTCC
T ss_pred ------CceeccC---CCCcEEEE-EECC--CCCchHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHHHHhhhccc
Confidence 2456642 25666543 3343 23444433221111 0 01111111111 1122333333 3
Q ss_pred HcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCC--CceEEEeeccchHHH
Q 014714 250 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATE 327 (420)
Q Consensus 250 ~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~ 327 (420)
.++|++.|+++|..+++.+|+ + ...+|...++++.+++ .|+ ++ .++||| |+++++++++...+
T Consensus 287 ~~~d~~~lg~lm~~~~~~l~~-~-------~~~~p~l~~l~~~a~~----~Ga-ga-~~sGaG~Gg~v~~l~~~~~~~~- 351 (395)
T 1kvk_A 287 VPEQYLVLEELMDMNQHHLNA-L-------GVGHASLDQLCQVTAA----HGL-HS-KLTGAGGGGCGITLLKPGLERA- 351 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-H-------TCCCHHHHHHHHHHHH----TTC-EE-EECSSCSSSEEEEEECTTCCHH-
T ss_pred cHHHHHHHHHHHHHHHHHHHH-c-------CCCCHHHHHHHHHHHH----cCC-ce-eeccCCCCCEEEEEecCCCCHH-
Confidence 448999999998776667765 2 1235777777777654 587 44 456988 99999998765444
Q ss_pred HHHHHHhhC
Q 014714 328 LLQRLLFFF 336 (420)
Q Consensus 328 v~~~l~~~f 336 (420)
+.+.+.+.|
T Consensus 352 ~~~~~~~~~ 360 (395)
T 1kvk_A 352 KVEAAKQAL 360 (395)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 565555544
No 25
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.83 E-value=1.2e-18 Score=181.53 Aligned_cols=282 Identities=15% Similarity=0.154 Sum_probs=177.4
Q ss_pred EEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCcc-----c-----c--C-Cc
Q 014714 10 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKE-----I-----S--L-GG 76 (420)
Q Consensus 10 ~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~-----~-----~--~-~~ 76 (420)
+.++||..|.++ |.+-+. |+.++|+++|+ ++++++++..++ ...++...+.. . + . ..
T Consensus 56 ~~~~APgrv~L~---Geh~D~---~g~~vl~~AI~---~~~~v~v~~~~~-~~i~i~~~~~~~~~~~~~~~~l~~~~~~~ 125 (478)
T 2a2c_A 56 FYVRAPGRVNII---GEHIDY---CGYSVLPMAVE---QDVLIAVEPVKT-YALQLANTNPLYPDFSTSANNIQIDKTKP 125 (478)
T ss_dssp EEEEEEEEEEEE---CTTCGG---GTCCBEEEEEE---EEEEEEEEECSS-SCEEEEESSTTSCCEEECCCCC--CCSSC
T ss_pred EEEEeceEEEEe---ccceee---CCCeEEEEEec---ccEEEEEEECCC-CeEEEEECCCCCcceeccchhcccCCCcc
Confidence 678999999997 777553 56799999998 899988876542 12333322210 0 0 0 11
Q ss_pred ---chHHHHHHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHH
Q 014714 77 ---GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQL 153 (420)
Q Consensus 77 ---~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL 153 (420)
+.+..+++.+.+.++.. ...+++|.++++||.++|||||||.++|++.|++++++.+++.++|
T Consensus 126 ~~~n~v~~a~~~v~~~~~~~--------------~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l 191 (478)
T 2a2c_A 126 LWHNYFLCGLKGIQEHFGLS--------------NLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVEL 191 (478)
T ss_dssp CHHHHHHHHHHHHHHHTTCC--------------SCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcc--------------CCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 23333445555554320 0357999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC---------cccccccc---CeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHh-
Q 014714 154 SAIARQGSG---------SACRSLFG---GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGM- 220 (420)
Q Consensus 154 ~~iAr~gsG---------sa~~sl~G---G~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m- 220 (420)
.++|.+++. +.+.|++| |++..+... ....+++.+ ++++++| +-+........|..+
T Consensus 192 ~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~f~~------~~~~~~~~~---~~~~~vi-~~s~~~~~t~~t~~yn 261 (478)
T 2a2c_A 192 AEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSP------LRATDVKLP---SGAVFVI-ANSCVEMNKAATSHFN 261 (478)
T ss_dssp HHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEETTT------TEEEEECCC---TTEEEEE-EECCCCCCGGGSSHHH
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEEcCC------CceEEecCC---CCcEEEE-EeCCCcccccccchhH
Confidence 999987752 22447887 666544311 234555422 3455443 323221111111111
Q ss_pred ---------hhhhccc-----------------------------------------hh---------------------
Q 014714 221 ---------RESVETS-----------------------------------------LL--------------------- 229 (420)
Q Consensus 221 ---------~~~~~ts-----------------------------------------~~--------------------- 229 (420)
++.++.. .+
T Consensus 262 ~r~~e~~~A~~~L~~~~~~~~~~~~~l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~ 341 (478)
T 2a2c_A 262 IRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQ 341 (478)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCCCHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGT
T ss_pred HHHHHHHHHHHHHHhhhcccccccchHHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccc
Confidence 0111100 00
Q ss_pred ------HHHHHhhh--chHHHHHHHHHHHc---CCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHH
Q 014714 230 ------LQHRAKEV--VPKRIVQMEEAIQN---HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNR 298 (420)
Q Consensus 230 ------~~~~~~~~--~~~~~~~l~~Al~~---~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~ 298 (420)
...|..++ -..|+..++.+|.+ +|++.|+++| ++.|..+++.+ .-.+|...++++.+.+
T Consensus 342 ~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm----~~sh~slr~l~---~vs~peld~l~~~a~~--- 411 (478)
T 2a2c_A 342 DVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELM----NQSHMSCRDMY---ECSCPELDQLVDICRK--- 411 (478)
T ss_dssp TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHH----HHHHHHHHHTS---CCCCHHHHHHHHHHHH---
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH----HHHHHHHHhcc---cCCCHHHHHHHHHHHh---
Confidence 00111112 13467888999999 9999999987 35677776543 1236777777766654
Q ss_pred hcCCCcEEEeeCCC--CceEEEeeccchHHHHHHHHHhhCCC
Q 014714 299 SVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFFPP 338 (420)
Q Consensus 299 ~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~l~~~f~~ 338 (420)
.|++++. ++||| ++++++++++..++ +.+.|.+.|..
T Consensus 412 -~Ga~Gar-ltGAG~GG~viaLv~~~~~~~-~~~~l~~~y~~ 450 (478)
T 2a2c_A 412 -FGAQGSR-LTGAGWGGCTVSMVPADKLPS-FLANVHKAYYQ 450 (478)
T ss_dssp -TTCSEEE-ECTTCSSSEEEEEEEGGGHHH-HHHHHHHHHHC
T ss_pred -CCCcEEE-eccCCCccEEEEEEcHHHHHH-HHHHHHHHHHH
Confidence 6888454 55885 99999998866666 88888887654
No 26
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.83 E-value=2e-18 Score=170.04 Aligned_cols=283 Identities=12% Similarity=0.081 Sum_probs=178.6
Q ss_pred EEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccc--cC----CcchHHHH
Q 014714 9 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEI--SL----GGGRYQNC 82 (420)
Q Consensus 9 ~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~--~~----~~~r~~~~ 82 (420)
|++++||..+-|+ |.+-..| |+.++|.++++ +|++++|+.++ ..+|..+.... +. ..+.++.+
T Consensus 1 mi~v~apGKviL~---GEhaVv~--~G~~Ala~ai~---~~~~v~i~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~ 69 (335)
T 3gon_A 1 MIAVKTCGKLYWA---GEYAILE--PGQLALIKDIP---IYMRAEIAFSD---SYRIYSDMFDFAVDLRPNPDYSLIQET 69 (335)
T ss_dssp CEEEEEEEEEEEE---CTTGGGS--TTCEEEEEEEE---EEEEEEEEECS---SCEEEETTSSSCBCSSCCTTTHHHHHH
T ss_pred CEEEEECCEEEEE---eeeeEEc--CCCcEEEEEec---ceEEEEEEECC---CCEEEEeCCCcccccCcCCCcHHHHHH
Confidence 4789999999885 6554332 57889999998 78888887764 34565543221 11 12345556
Q ss_pred HHHHHHHccccccccccccccccccccccEEEEEecCCCCc---cccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 014714 83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA---AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ 159 (420)
Q Consensus 83 l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a---aGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~ 159 (420)
++.+.++..... ....+++|.+.+++|.+ +|||||||..+|++.|++++++++++.+++.++|..
T Consensus 70 i~~~~~~l~~~~------------~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~ 137 (335)
T 3gon_A 70 IALMGDFLAVRG------------QNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSA 137 (335)
T ss_dssp HHHHHHHHHHTT------------CCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------CCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHH
Confidence 665555544321 11357888889999977 699999999999999999999999999999999965
Q ss_pred c--------cC-ccccccccCeEEEecccCC----------------CCCCceEEEccCCCCCCCceEEEEEECCCCCcc
Q 014714 160 G--------SG-SACRSLFGGFVKWILGKEG----------------NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 214 (420)
Q Consensus 160 g--------sG-sa~~sl~GG~V~~~~g~~~----------------~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~v 214 (420)
. +| +.+.|.|||++.+...... ........++.++ +++++++.. +. ...
T Consensus 138 ~E~~~~g~~sg~D~a~a~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~-~~--~~~ 211 (335)
T 3gon_A 138 VLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT---LECDFLVGW-TK--EVA 211 (335)
T ss_dssp HHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC---SCCEEEEEE-CC--CCC
T ss_pred HHHHhcCCCCCCCcceeecCCeEEEEeCCccccceeecccchhheecccccceeEEcCCc---cccceEEee-cC--Chh
Confidence 4 33 4577899999865532100 0011123444432 344544333 32 223
Q ss_pred CchHHhhhhhccchhHHHHHhhhchHHHHHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHH
Q 014714 215 SSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVE 294 (420)
Q Consensus 215 sst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~ 294 (420)
+|..+...+.... .+..+.. ...++..+..+|+++|++.|+++|...++.++.... ...+|...++++..+
T Consensus 212 -~t~~~v~~v~~~~-~~~~~~~-~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~------~is~p~ld~l~~~a~ 282 (335)
T 3gon_A 212 -VSSHMVQQIKQNI-NQNFLTS-SKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLST------DIYTPLLRQLKEASQ 282 (335)
T ss_dssp -CHHHHHHHHGGGC-CHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCT------TTCCHHHHHHHHTTT
T ss_pred -hHHHHHHHHHHHh-HHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC------cCCCHHHHHHHHHHH
Confidence 3444443333211 1222222 256788999999999999999998766666665432 223566666666554
Q ss_pred HHHHhcCCCcEEEeeCCC--CceEEEeeccchHHHHHHHHHhh
Q 014714 295 RWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFF 335 (420)
Q Consensus 295 ~~~~~~Ga~~~a~tsgAG--Ptv~~i~~~~~~~~~v~~~l~~~ 335 (420)
..|+ ++. ++||| +.+++++++++..+.+.+++++.
T Consensus 283 ----~~g~-~ak-ltGAG~Ggc~ial~~~~~~~~~i~~~~~~~ 319 (335)
T 3gon_A 283 ----DLQA-VAK-SSGAGGGDCGIALSFDAQSTKTLKNRWADL 319 (335)
T ss_dssp ----TSSE-EEE-ECTTCSSSEEEEEECSHHHHHHHHHHHHHT
T ss_pred ----hCCc-EEE-EccccchheEEEEECCHHHHHHHHHHHHHC
Confidence 3565 344 55877 67888887665444466665543
No 27
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.47 E-value=7.3e-12 Score=131.23 Aligned_cols=207 Identities=18% Similarity=0.210 Sum_probs=130.1
Q ss_pred ccEEEEEecCCCCccccccchHHHHHHHHHHHHHh---CCCCCHHHHHHHHHhcc---Ccc------ccccccC---eEE
Q 014714 110 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLM---NLKENQSQLSAIARQGS---GSA------CRSLFGG---FVK 174 (420)
Q Consensus 110 ~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~---~l~ls~~eL~~iAr~gs---Gsa------~~sl~GG---~V~ 174 (420)
.++.|.+.++||.++|| |||..+|++.|+++++ +++++..+|.++|.+++ |.. ..|++|| ++.
T Consensus 146 ~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~ 223 (520)
T 3v2u_C 146 VGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 223 (520)
T ss_dssp CCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEE
T ss_pred CceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEE
Confidence 58899999999999999 8999999999999999 78899999999997764 222 3488997 665
Q ss_pred EecccCCCCCCceEEEccCCC-CCCCceEEEEEECCCC---CccCchHHh--h--------hhh----------------
Q 014714 175 WILGKEGNGSDSLAVQLVDEE-HWNDLVIIIAVVSSRQ---KETSSTTGM--R--------ESV---------------- 224 (420)
Q Consensus 175 ~~~g~~~~g~ds~a~~i~~~~-~wp~l~~vvlvv~~~~---k~vsst~~m--~--------~~~---------------- 224 (420)
.+... . -...+++.+. ..+++.++ |++... |.......+ | +.+
T Consensus 224 id~~~---~--l~~~~v~~p~~~~~~~~~v--I~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~ 296 (520)
T 3v2u_C 224 VEFRP---K--LKATPFKFPQLKNHEISFV--IANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSN 296 (520)
T ss_dssp EECSS---S--CEEEEECCCCCSSCEEEEE--EEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSS
T ss_pred EEcCC---C--ceeEEeeCCCccCCCeEEE--EEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCcccccccccc
Confidence 54321 0 1233443210 11244444 333322 110000000 0 000
Q ss_pred ----------------------------------------------cc------------------ch------------
Q 014714 225 ----------------------------------------------ET------------------SL------------ 228 (420)
Q Consensus 225 ----------------------------------------------~t------------------s~------------ 228 (420)
.. ..
T Consensus 297 ~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~~ 376 (520)
T 3v2u_C 297 SERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVR 376 (520)
T ss_dssp CTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCEE
T ss_pred cccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhccccccc
Confidence 00 00
Q ss_pred ----hHHHHHhhhc--hHHHHHHHHHHHcC-------CHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHH
Q 014714 229 ----LLQHRAKEVV--PKRIVQMEEAIQNH-------DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER 295 (420)
Q Consensus 229 ----~~~~~~~~~~--~~~~~~l~~Al~~~-------D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~ 295 (420)
....|..+++ ..|+..+..+|+++ |++.|+++| ++.|..+++.|- --.|+...+++..+
T Consensus 377 ~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm----~~sH~slr~~~~---vS~peld~lv~~a~- 448 (520)
T 3v2u_C 377 FQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLM----NESQASCDKLYE---CSCIETNQICSIAL- 448 (520)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH----HHHHHHHHHTSC---CCCHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHH----HHHHHHHHHhcC---CCcHHHHHHHHHHH-
Confidence 0123444432 34788899999997 599999987 477888876531 12456666655554
Q ss_pred HHHhcCCCcEEEeeCCC--CceEEEe---eccchHHHHHHHHHhhCCC
Q 014714 296 WNRSVGSPQVAYTFDAG--PNAVLIA---RNRKIATELLQRLLFFFPP 338 (420)
Q Consensus 296 ~~~~~Ga~~~a~tsgAG--Ptv~~i~---~~~~~~~~v~~~l~~~f~~ 338 (420)
..|++++ -++||| +.+++++ +.+..++ +.+.+.+.|..
T Consensus 449 ---~~Ga~Ga-rlTGaG~GGc~iaLv~~~~~~~~~~-~~~~l~~~y~~ 491 (520)
T 3v2u_C 449 ---ANGSFGS-RLTGAGWGGCTIHLVPSGANGNVEQ-VRKALIEKFYN 491 (520)
T ss_dssp ---HTTCSEE-EECSSCSSSEEEEEEEESTTCSHHH-HHHHHHHHTHH
T ss_pred ---hCCCCEE-EEecCCCCceEEEEEcCCCHHHHHH-HHHHHHHHHHh
Confidence 3688844 455888 9999999 6666666 99888887654
Done!