Query 014715
Match_columns 420
No_of_seqs 357 out of 2236
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09431 asnB asparagine synth 100.0 1.3E-93 2.7E-98 727.7 44.3 417 1-417 1-423 (554)
2 PLN02549 asparagine synthase ( 100.0 2.8E-93 6.1E-98 725.6 44.3 417 1-417 1-417 (578)
3 PTZ00077 asparagine synthetase 100.0 3.1E-93 6.7E-98 727.3 44.4 417 1-417 1-431 (586)
4 KOG0571 Asparagine synthase (g 100.0 6.5E-95 1.4E-99 672.8 28.9 414 1-417 1-415 (543)
5 TIGR03104 trio_amidotrans aspa 100.0 1.3E-83 2.8E-88 662.5 42.0 403 1-417 1-494 (589)
6 COG0367 AsnB Asparagine syntha 100.0 1.1E-82 2.3E-87 645.3 38.9 405 1-418 1-417 (542)
7 TIGR01536 asn_synth_AEB aspara 100.0 4.8E-80 1E-84 624.3 44.0 401 4-417 1-439 (467)
8 TIGR03108 eps_aminotran_1 exos 100.0 1E-77 2.3E-82 627.1 39.9 343 1-356 1-378 (628)
9 KOG0573 Asparagine synthase [A 100.0 3.9E-46 8.5E-51 349.6 25.6 394 1-418 1-464 (520)
10 cd00712 AsnB Glutamine amidotr 100.0 1.9E-40 4E-45 302.9 23.9 189 2-192 1-220 (220)
11 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 7.3E-37 1.6E-41 268.8 18.0 168 1-178 1-179 (181)
12 PRK08525 amidophosphoribosyltr 100.0 9.1E-36 2E-40 295.8 27.0 217 1-223 1-273 (445)
13 PRK07631 amidophosphoribosyltr 100.0 8.4E-35 1.8E-39 288.5 27.3 233 1-243 11-298 (475)
14 PRK09123 amidophosphoribosyltr 100.0 1.2E-34 2.6E-39 288.9 27.9 234 1-244 21-311 (479)
15 PRK06388 amidophosphoribosyltr 100.0 4.7E-35 1E-39 290.6 24.8 227 1-234 19-302 (474)
16 PRK07272 amidophosphoribosyltr 100.0 2.5E-34 5.4E-39 285.7 29.0 183 1-189 11-236 (484)
17 cd00714 GFAT Glutamine amidotr 100.0 4E-35 8.7E-40 265.9 20.9 172 2-181 1-214 (215)
18 PRK07349 amidophosphoribosyltr 100.0 3.8E-34 8.2E-39 285.1 27.8 228 1-233 33-322 (500)
19 PRK06781 amidophosphoribosyltr 100.0 8.1E-34 1.8E-38 282.0 29.1 235 1-245 11-300 (471)
20 PRK08341 amidophosphoribosyltr 100.0 5.2E-34 1.1E-38 281.3 26.9 179 1-188 4-222 (442)
21 PRK07847 amidophosphoribosyltr 100.0 7.9E-34 1.7E-38 283.4 25.2 227 1-233 23-312 (510)
22 cd01991 Asn_Synthase_B_C The C 100.0 2.4E-34 5.3E-39 271.2 16.9 196 211-417 1-238 (269)
23 PLN02440 amidophosphoribosyltr 100.0 1.3E-33 2.9E-38 282.5 22.8 180 1-186 1-222 (479)
24 PRK05793 amidophosphoribosyltr 100.0 1.9E-32 4.1E-37 273.5 27.4 183 1-188 14-238 (469)
25 PF00733 Asn_synthase: Asparag 100.0 5.2E-34 1.1E-38 266.5 13.9 200 209-417 1-230 (255)
26 cd00715 GPATase_N Glutamine am 100.0 1.5E-32 3.3E-37 255.4 22.6 183 2-190 1-226 (252)
27 PRK00331 glucosamine--fructose 100.0 8.9E-33 1.9E-37 288.0 22.0 180 1-188 1-222 (604)
28 cd01907 GlxB Glutamine amidotr 100.0 8.8E-33 1.9E-37 255.5 18.2 174 2-181 1-248 (249)
29 PRK09246 amidophosphoribosyltr 100.0 1.5E-32 3.2E-37 276.7 20.9 181 1-186 1-235 (501)
30 TIGR01134 purF amidophosphorib 100.0 1.6E-31 3.5E-36 265.5 23.0 182 2-189 1-225 (442)
31 TIGR01135 glmS glucosamine--fr 100.0 1E-31 2.3E-36 280.1 20.8 179 2-188 1-221 (607)
32 cd01909 betaLS_CarA_N Glutamin 100.0 3.6E-31 7.9E-36 233.6 17.3 129 60-193 44-199 (199)
33 cd00352 Gn_AT_II Glutamine ami 100.0 1.6E-30 3.5E-35 237.8 21.6 178 2-179 1-219 (220)
34 PTZ00295 glucosamine-fructose- 100.0 5.7E-31 1.2E-35 275.1 20.4 183 1-191 24-255 (640)
35 COG0034 PurF Glutamine phospho 100.0 5.1E-28 1.1E-32 230.4 24.8 239 1-246 4-301 (470)
36 cd01910 Wali7 This domain is p 100.0 7.8E-29 1.7E-33 219.2 17.2 139 60-201 63-209 (224)
37 PF13537 GATase_7: Glutamine a 100.0 1.4E-29 3E-34 210.0 10.1 119 48-166 1-125 (125)
38 PTZ00394 glucosamine-fructose- 100.0 3E-28 6.6E-33 253.8 21.0 183 1-186 1-275 (670)
39 PLN02981 glucosamine:fructose- 100.0 2.3E-28 4.9E-33 255.7 19.7 185 1-188 1-274 (680)
40 KOG0572 Glutamine phosphoribos 100.0 1.3E-26 2.9E-31 213.8 21.7 187 1-191 1-241 (474)
41 PF13522 GATase_6: Glutamine a 99.9 2.6E-26 5.5E-31 192.2 15.5 127 33-160 1-133 (133)
42 COG0449 GlmS Glucosamine 6-pho 99.9 8.9E-26 1.9E-30 225.0 18.8 178 1-187 1-218 (597)
43 TIGR03442 conserved hypothetic 99.8 6.5E-19 1.4E-23 162.7 15.6 174 1-188 1-247 (251)
44 KOG1268 Glucosamine 6-phosphat 99.8 1.2E-17 2.7E-22 160.4 14.8 182 1-185 1-277 (670)
45 cd01908 YafJ Glutamine amidotr 99.7 5.5E-17 1.2E-21 151.4 15.2 133 44-184 82-256 (257)
46 PF00310 GATase_2: Glutamine a 99.7 1.7E-16 3.7E-21 153.2 18.8 110 43-160 196-360 (361)
47 cd00713 GltS Glutamine amidotr 99.7 2.7E-16 5.9E-21 152.5 16.4 135 43-185 202-395 (413)
48 cd01996 Alpha_ANH_like_III Thi 99.5 7.3E-14 1.6E-18 120.3 10.3 125 227-363 3-130 (154)
49 PF12481 DUF3700: Aluminium in 99.5 1.2E-12 2.7E-17 113.8 16.3 131 68-201 75-213 (228)
50 TIGR03573 WbuX N-acetyl sugar 99.4 1.7E-12 3.8E-17 125.9 13.8 118 226-354 60-179 (343)
51 COG0067 GltB Glutamate synthas 99.2 1.5E-10 3.2E-15 110.4 14.4 132 44-186 204-362 (371)
52 COG1606 ATP-utilizing enzymes 99.2 1.6E-10 3.5E-15 103.2 10.2 114 224-353 16-131 (269)
53 PRK11750 gltB glutamate syntha 99.2 3.2E-10 7E-15 123.8 14.2 133 43-183 213-403 (1485)
54 TIGR00268 conserved hypothetic 99.2 3.1E-10 6.7E-15 105.6 12.1 116 221-353 8-125 (252)
55 PRK14561 hypothetical protein; 99.1 6.3E-10 1.4E-14 99.2 11.2 107 227-349 2-108 (194)
56 PF13230 GATase_4: Glutamine a 99.1 9.5E-10 2.1E-14 103.0 11.2 178 1-187 1-253 (271)
57 cd00553 NAD_synthase NAD+ synt 99.1 1.6E-09 3.4E-14 100.7 11.7 133 208-353 8-147 (248)
58 cd01990 Alpha_ANH_like_I This 99.0 1.3E-09 2.8E-14 98.2 9.6 111 228-353 1-113 (202)
59 PRK13980 NAD synthetase; Provi 99.0 1.4E-09 3.1E-14 101.9 10.2 133 208-352 15-149 (265)
60 TIGR00552 nadE NAD+ synthetase 99.0 1.3E-09 2.7E-14 101.5 8.4 134 206-353 5-145 (250)
61 PRK00143 mnmA tRNA-specific 2- 99.0 4.6E-09 1E-13 102.0 11.0 113 227-349 2-130 (346)
62 COG0482 TrmU Predicted tRNA(5- 98.9 6.6E-09 1.4E-13 98.7 10.7 114 225-348 3-129 (356)
63 COG0603 Predicted PP-loop supe 98.9 8.3E-09 1.8E-13 91.7 10.6 118 227-355 4-134 (222)
64 cd01998 tRNA_Me_trans tRNA met 98.9 8E-09 1.7E-13 100.5 11.4 113 227-349 1-127 (349)
65 PF06508 QueC: Queuosine biosy 98.9 1.2E-08 2.5E-13 91.9 11.6 156 228-411 2-174 (209)
66 PRK11106 queuosine biosynthesi 98.9 7.2E-09 1.6E-13 94.3 10.2 157 227-411 3-176 (231)
67 PRK00876 nadE NAD synthetase; 98.9 1.2E-08 2.6E-13 97.4 11.8 83 205-296 14-98 (326)
68 PF03054 tRNA_Me_trans: tRNA m 98.9 2.8E-09 6E-14 102.8 7.4 114 227-350 2-131 (356)
69 PRK14665 mnmA tRNA-specific 2- 98.9 6.6E-09 1.4E-13 100.9 10.0 114 223-346 3-124 (360)
70 cd01993 Alpha_ANH_like_II This 98.9 1.1E-08 2.3E-13 90.7 10.1 117 227-350 1-121 (185)
71 PRK04527 argininosuccinate syn 98.8 3.1E-08 6.7E-13 96.5 10.6 108 226-344 3-118 (400)
72 PRK14664 tRNA-specific 2-thiou 98.8 5.1E-08 1.1E-12 94.5 12.0 113 224-347 4-120 (362)
73 TIGR00420 trmU tRNA (5-methyla 98.8 4.7E-08 1E-12 95.0 10.9 109 227-345 2-127 (352)
74 TIGR00364 exsB protein. This p 98.8 7E-08 1.5E-12 86.8 11.2 152 229-411 2-172 (201)
75 PRK00509 argininosuccinate syn 98.8 4.8E-08 1E-12 95.5 10.7 110 226-345 3-119 (399)
76 cd01712 ThiI ThiI is required 98.7 1.1E-07 2.4E-12 83.7 11.1 109 227-347 1-115 (177)
77 PTZ00323 NAD+ synthase; Provis 98.7 2.2E-07 4.9E-12 87.5 12.6 131 216-354 35-181 (294)
78 TIGR00884 guaA_Cterm GMP synth 98.7 1.1E-07 2.4E-12 90.7 10.2 109 226-348 17-130 (311)
79 PRK00919 GMP synthase subunit 98.6 2.1E-07 4.5E-12 88.3 11.1 117 216-348 13-132 (307)
80 PRK10696 tRNA 2-thiocytidine b 98.6 3.4E-07 7.5E-12 85.5 12.1 133 208-349 10-145 (258)
81 PF09147 DUF1933: Domain of un 98.6 6.1E-07 1.3E-11 75.5 11.4 118 60-182 41-186 (201)
82 PRK13820 argininosuccinate syn 98.6 3.2E-07 7E-12 89.7 10.9 111 226-346 3-120 (394)
83 PF02540 NAD_synthase: NAD syn 98.6 2.5E-07 5.4E-12 85.3 9.5 134 208-354 3-139 (242)
84 PRK08349 hypothetical protein; 98.6 3E-07 6.4E-12 82.5 9.6 111 227-348 2-118 (198)
85 TIGR02432 lysidine_TilS_N tRNA 98.5 3.1E-07 6.7E-12 81.7 8.9 108 227-348 1-112 (189)
86 cd01999 Argininosuccinate_Synt 98.5 6.4E-07 1.4E-11 87.7 11.5 108 228-345 1-116 (385)
87 PLN00200 argininosuccinate syn 98.5 6.2E-07 1.3E-11 87.9 11.0 111 226-345 6-123 (404)
88 cd01997 GMP_synthase_C The C-t 98.5 4.1E-07 8.9E-12 86.0 8.6 108 227-348 1-113 (295)
89 PRK00074 guaA GMP synthase; Re 98.5 1.3E-06 2.9E-11 89.2 11.9 125 209-348 200-329 (511)
90 PRK13981 NAD synthetase; Provi 98.5 1.2E-06 2.6E-11 90.7 11.5 136 208-354 261-405 (540)
91 cd01986 Alpha_ANH_like Adenine 98.4 1E-06 2.2E-11 70.2 8.6 77 228-351 1-77 (103)
92 COG0037 MesJ tRNA(Ile)-lysidin 98.4 1.1E-06 2.4E-11 84.1 10.1 124 210-348 6-133 (298)
93 PRK00768 nadE NAD synthetase; 98.4 1.6E-06 3.4E-11 80.4 10.6 139 212-354 23-170 (268)
94 KOG2805 tRNA (5-methylaminomet 98.4 1.9E-06 4.1E-11 79.2 10.4 118 226-353 6-139 (377)
95 PRK01565 thiamine biosynthesis 98.4 1.2E-06 2.6E-11 86.8 9.8 110 223-349 174-293 (394)
96 cd01992 PP-ATPase N-terminal d 98.4 8.9E-07 1.9E-11 78.4 7.6 105 227-348 1-109 (185)
97 TIGR00032 argG argininosuccina 98.4 1.6E-06 3.5E-11 85.1 10.0 107 227-345 1-116 (394)
98 PRK08384 thiamine biosynthesis 98.4 2.7E-06 5.8E-11 83.2 10.9 112 223-348 178-297 (381)
99 cd01994 Alpha_ANH_like_IV This 98.3 4.8E-06 1.1E-10 74.1 11.0 92 227-347 1-100 (194)
100 PLN02347 GMP synthetase 98.3 2.1E-06 4.6E-11 87.7 9.9 122 216-350 220-350 (536)
101 TIGR00342 thiazole biosynthesi 98.3 2.3E-06 5E-11 84.1 9.2 113 223-348 170-288 (371)
102 TIGR03679 arCOG00187 arCOG0018 98.3 3.8E-06 8.3E-11 76.3 9.6 89 230-347 2-98 (218)
103 PF01171 ATP_bind_3: PP-loop f 98.3 2.4E-06 5.1E-11 75.6 7.8 104 227-348 1-109 (182)
104 COG2117 Predicted subunit of t 98.2 5.1E-06 1.1E-10 69.1 8.1 61 227-297 2-62 (198)
105 cd01995 ExsB ExsB is a transcr 98.2 7.2E-06 1.6E-10 71.6 9.1 87 227-348 1-89 (169)
106 PRK02628 nadE NAD synthetase; 98.2 1.3E-05 2.9E-10 84.9 11.7 142 208-355 342-494 (679)
107 PRK01269 tRNA s(4)U8 sulfurtra 98.2 1E-05 2.2E-10 82.4 10.4 112 223-348 175-293 (482)
108 cd01713 PAPS_reductase This do 98.1 7.6E-06 1.7E-10 71.1 7.9 115 227-350 1-120 (173)
109 PRK05253 sulfate adenylyltrans 98.1 4.4E-05 9.5E-10 72.5 11.6 108 226-347 28-139 (301)
110 PF02568 ThiI: Thiamine biosyn 98.0 1.7E-05 3.8E-10 70.2 8.2 110 225-348 3-121 (197)
111 PF00764 Arginosuc_synth: Argi 98.0 3.4E-05 7.4E-10 75.1 9.7 110 230-348 2-121 (388)
112 COG0121 Predicted glutamine am 97.9 0.00038 8.3E-09 64.1 15.1 42 43-84 71-116 (252)
113 PRK05370 argininosuccinate syn 97.9 0.00014 3E-09 71.4 12.2 117 221-348 7-138 (447)
114 PRK10660 tilS tRNA(Ile)-lysidi 97.9 9E-05 2E-09 74.4 10.8 75 217-296 7-85 (436)
115 COG1365 Predicted ATPase (PP-l 97.9 0.00015 3.2E-09 63.4 10.5 122 210-354 35-170 (255)
116 COG0171 NadE NAD synthase [Coe 97.9 0.00014 3E-09 67.5 10.8 136 211-353 9-154 (268)
117 PRK08576 hypothetical protein; 97.9 0.00011 2.3E-09 73.2 10.6 104 227-347 236-342 (438)
118 COG0137 ArgG Argininosuccinate 97.8 0.00024 5.3E-09 67.9 11.9 114 225-348 4-128 (403)
119 PLN02339 NAD+ synthase (glutam 97.5 0.001 2.3E-08 70.6 12.6 89 208-296 329-449 (700)
120 TIGR02039 CysD sulfate adenyly 97.4 0.0009 1.9E-08 63.1 9.4 107 228-348 22-132 (294)
121 KOG0399 Glutamate synthase [Am 97.3 0.00098 2.1E-08 71.3 9.3 132 43-182 285-476 (2142)
122 COG0519 GuaA GMP synthase, PP- 97.2 0.0031 6.8E-08 57.7 10.4 75 209-293 6-83 (315)
123 COG0301 ThiI Thiamine biosynth 97.2 0.0032 7E-08 61.2 10.8 114 223-348 173-292 (383)
124 PRK02090 phosphoadenosine phos 97.2 0.0012 2.6E-08 61.0 7.5 59 227-295 42-102 (241)
125 TIGR00289 conserved hypothetic 97.1 0.0049 1.1E-07 55.9 10.0 60 227-296 2-68 (222)
126 PRK08557 hypothetical protein; 97.1 0.0056 1.2E-07 60.9 11.2 59 225-293 181-241 (417)
127 PF01507 PAPS_reduct: Phosphoa 97.0 0.0019 4.1E-08 56.3 6.7 105 228-348 2-112 (174)
128 PRK12563 sulfate adenylyltrans 96.9 0.0071 1.5E-07 57.4 9.6 107 227-347 39-149 (312)
129 KOG1706 Argininosuccinate synt 96.8 0.005 1.1E-07 57.0 7.9 122 225-359 5-138 (412)
130 PRK13795 hypothetical protein; 96.7 0.011 2.3E-07 62.5 10.3 60 225-294 243-304 (636)
131 TIGR02057 PAPS_reductase phosp 96.3 0.039 8.5E-07 50.4 10.4 63 226-297 26-90 (226)
132 cd01984 AANH_like Adenine nucl 96.3 0.014 3.1E-07 44.4 6.4 34 228-268 1-34 (86)
133 PRK13794 hypothetical protein; 96.3 0.046 1E-06 55.6 11.9 59 226-293 248-308 (479)
134 TIGR00434 cysH phosophoadenyly 96.1 0.043 9.3E-07 49.6 9.4 56 227-292 15-72 (212)
135 PRK06850 hypothetical protein; 95.8 0.15 3.2E-06 51.9 12.6 131 216-348 24-172 (507)
136 TIGR03183 DNA_S_dndC putative 95.5 0.12 2.7E-06 51.7 10.7 122 224-347 12-150 (447)
137 COG0175 CysH 3'-phosphoadenosi 95.4 0.078 1.7E-06 49.6 8.6 58 226-293 40-99 (261)
138 COG3969 Predicted phosphoadeno 95.2 0.097 2.1E-06 49.5 8.4 44 223-271 25-68 (407)
139 KOG1622 GMP synthase [Nucleoti 95.1 0.097 2.1E-06 51.2 8.2 69 218-295 224-294 (552)
140 COG2102 Predicted ATPases of P 93.7 0.94 2E-05 40.7 10.7 60 227-296 2-69 (223)
141 PF01902 ATP_bind_4: ATP-bindi 91.7 0.45 9.8E-06 43.1 6.1 71 227-307 2-81 (218)
142 TIGR00290 MJ0570_dom MJ0570-re 90.8 1.2 2.6E-05 40.4 7.9 57 228-294 3-66 (223)
143 KOG2303 Predicted NAD synthase 83.2 5.4 0.00012 40.0 7.9 69 228-296 352-449 (706)
144 KOG2840 Uncharacterized conser 80.9 5.2 0.00011 38.0 6.6 119 223-348 49-176 (347)
145 PF02677 DUF208: Uncharacteriz 66.0 31 0.00067 30.1 7.3 97 231-341 4-110 (176)
146 TIGR02055 APS_reductase thiore 64.5 14 0.00029 32.8 5.1 49 235-293 2-52 (191)
147 COG0367 AsnB Asparagine syntha 64.0 4.8 0.00011 41.8 2.4 34 380-417 415-448 (542)
148 PLN02309 5'-adenylylsulfate re 55.7 47 0.001 33.7 7.7 57 226-293 111-169 (457)
149 TIGR00424 APS_reduc 5'-adenyly 50.2 62 0.0014 32.9 7.6 56 226-292 116-173 (463)
150 COG1856 Uncharacterized homolo 46.5 16 0.00034 33.0 2.3 18 225-242 54-71 (275)
151 COG0041 PurE Phosphoribosylcar 39.4 1.2E+02 0.0026 25.8 6.3 60 272-352 12-74 (162)
152 COG1636 Uncharacterized protei 29.2 3.8E+02 0.0083 23.7 8.0 103 227-343 5-118 (204)
153 COG0067 GltB Glutamate synthas 23.2 74 0.0016 31.2 3.0 38 1-38 12-51 (371)
154 PF08057 Ery_res_leader2: Eryt 23.1 30 0.00064 16.1 0.1 13 388-400 1-13 (14)
155 PRK03359 putative electron tra 22.9 2.5E+02 0.0055 26.1 6.3 56 229-292 84-145 (256)
156 cd01455 vWA_F11C1-5a_type Von 22.6 5.3E+02 0.011 22.8 7.9 65 212-288 95-168 (191)
157 cd00713 GltS Glutamine amidotr 21.8 1.2E+02 0.0025 30.5 4.0 34 2-35 1-35 (413)
158 COG1435 Tdk Thymidine kinase [ 21.1 2.9E+02 0.0063 24.6 5.9 30 324-353 99-131 (201)
159 PRK14010 potassium-transportin 20.7 1.9E+02 0.0041 31.1 5.6 23 325-347 493-515 (673)
160 COG4911 Uncharacterized conser 20.3 2.1E+02 0.0045 22.6 4.2 36 98-133 52-97 (123)
161 PRK05967 cystathionine beta-ly 20.3 8.6E+02 0.019 24.2 10.0 102 227-343 80-187 (395)
No 1
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=1.3e-93 Score=727.67 Aligned_cols=417 Identities=59% Similarity=1.031 Sum_probs=373.5
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEeeEEcC
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (420)
||||+|+++.+.........+.+|++.|+|||||++|++..+++.|||+||+|+|...+.||+.+.++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN 80 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYN 80 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEec
Confidence 99999999765433212456889999999999999999999999999999999998789999999999999999999999
Q ss_pred hHHHHHHh-cCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEee
Q 014715 81 HEALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (420)
Q Consensus 81 ~~~L~~~l-~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (420)
+.+|+++| ..+.|++.||+|+|+++|++||.+++++|+|+|||++||.++++++++||++|+|||||++..++.++|||
T Consensus 81 ~~eLr~~L~~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faS 160 (554)
T PRK09431 81 HQELRAELGDKYAFQTGSDCEVILALYQEKGPDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFAS 160 (554)
T ss_pred HHHHHHHHhccCCcCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEec
Confidence 99999999 45788999999999999999999999999999999999999999999999999999999886448899999
Q ss_pred CccccccccccceeeCCCcEEEccCCeeEEeeCCCCCCC-CCCCCCCcHHHHHHHHHHHhhhhcccccceeEEecCCcch
Q 014715 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDS 238 (420)
Q Consensus 160 e~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDS 238 (420)
|+++|...+++|++|||||++.+..++..+||++.|... ..++.++.+++++++|.+||++|+.+++|+|++||||+||
T Consensus 161 E~kaL~~~~~~I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDS 240 (554)
T PRK09431 161 EMKALVPVCKTIKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDS 240 (554)
T ss_pred chHHHHHhcCCEEEECCCeEEEECCCcEEEecCCCcccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccH
Confidence 999999999999999999999877667889999876432 2223345678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccc----ccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHHHHHhhccCC
Q 014715 239 SLVASITARHLAGTKA----ARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYD 314 (420)
Q Consensus 239 s~iaa~~~~~~~~~~~----~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (420)
|+||+++++...+... ...|..+++|||+++++++|..+|+++|+++|++||++.++.+++++.++++++++++++
T Consensus 241 SlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~d 320 (554)
T PRK09431 241 SLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEGSPDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYD 320 (554)
T ss_pred HHHHHHHHHhhcccccccccccccCCCceEEEEeCCCCChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 9999999887532100 001223699999999999999999999999999999999999999999999999999988
Q ss_pred cccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhHHHHHHHHHhhhcccchhhHHHhhcCccc
Q 014715 315 VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEA 394 (420)
Q Consensus 315 ~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~ 394 (420)
++.+++++++|++++.+++.|++|+|||+|||||||||.+|+.+|+...+..+..+++.+++..+|.|.||++|+||+|+
T Consensus 321 p~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElFgGY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~ 400 (554)
T PRK09431 321 VTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFGGYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEA 400 (554)
T ss_pred CccchhHHHHHHHHHHHHHcCCEEEEecCchhhhhcCchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCcee
Confidence 77788889999999998888999999999999999999999887776667788888888999899999999999999999
Q ss_pred ccCcCCHHHHHHHHcCCcccccc
Q 014715 395 RVPFLDKDFINVAMAIDPEWKMV 417 (420)
Q Consensus 395 r~PfLd~~lv~~a~~lP~~~k~~ 417 (420)
|+||||++||+++++||+++|+.
T Consensus 401 RvPFLD~~lv~~a~~ip~~~K~~ 423 (554)
T PRK09431 401 RVPFLDKEFLDVAMRINPEDKMC 423 (554)
T ss_pred ecCcCCHHHHHHHHhCCHHHHhc
Confidence 99999999999999999999985
No 2
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=2.8e-93 Score=725.55 Aligned_cols=417 Identities=87% Similarity=1.429 Sum_probs=375.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEeeEEcC
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (420)
||||+|+++.+.........+.+|+..|+|||||++|++..+++.|||+||+++|...+.||+.+.++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN 80 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYN 80 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEc
Confidence 99999999755443223456789999999999999999999999999999999998889999999889999999999999
Q ss_pred hHHHHHHhcCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeC
Q 014715 81 HEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (420)
Q Consensus 81 ~~~L~~~l~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (420)
+.+|+++|..+.|++.||+|+|+++|++||.+++++|+|+|||++||.++++++++||++|+|||||++..++.++||||
T Consensus 81 ~~eLr~~L~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE 160 (578)
T PLN02549 81 HKELREKLKLHKFRTGSDCEVIAHLYEEHGEEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASE 160 (578)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEec
Confidence 99999999547899999999999999999999999999999999999998999999999999999998764678999999
Q ss_pred ccccccccccceeeCCCcEEEccCCeeEEeeCCCCCCCCCCCCCCcHHHHHHHHHHHhhhhcccccceeEEecCCcchHH
Q 014715 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240 (420)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~ 240 (420)
+++|...+.+|++|||||++.++.++.++||++.|.....++.++..++++++|.+||++|+.++.|+|++||||+|||+
T Consensus 161 ~KaL~~~~~~I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSl 240 (578)
T PLN02549 161 MKALCDDCERFEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSL 240 (578)
T ss_pred HHHHHHHhCCEEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHH
Confidence 99999999999999999999887666889999887543334445567899999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHHHHHhhccCCcccccc
Q 014715 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA 320 (420)
Q Consensus 241 iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (420)
|++++++...+...+..++.++++||+++++++|..+|+++|+++|++|+++.++.+++.+.+++++++++++++..++.
T Consensus 241 Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~ 320 (578)
T PLN02549 241 VASIAARHLAETKAARQWGQQLHSFCVGLEGSPDLKAAREVADYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRA 320 (578)
T ss_pred HHHHHHHhhhhcccccccCCCceEEecCCCCCCHHHHHHHHHHHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchh
Confidence 99999887543211011124799999999999999999999999999999999999999999999999999987767788
Q ss_pred hhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhHHHHHHHHHhhhcccchhhHHHhhcCcccccCcCC
Q 014715 321 STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (420)
Q Consensus 321 ~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r~PfLd 400 (420)
++++|++++.+++.|++|+|||+||||+||||.+|+++|+...|.+|+.++++.++..+|.|.||++|+||+|+|+||||
T Consensus 321 s~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD 400 (578)
T PLN02549 321 STPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (578)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCchHhhhcChHhhhhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCC
Confidence 89999999999999999999999999999999999888876678888888888898899999999999999999999999
Q ss_pred HHHHHHHHcCCcccccc
Q 014715 401 KDFINVAMAIDPEWKMV 417 (420)
Q Consensus 401 ~~lv~~a~~lP~~~k~~ 417 (420)
++||+++++||+++|+.
T Consensus 401 ~~~v~~a~~ip~~~k~~ 417 (578)
T PLN02549 401 KEFIDVAMSIDPEWKMI 417 (578)
T ss_pred HHHHHHHHhCCHHHHhc
Confidence 99999999999999984
No 3
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=3.1e-93 Score=727.31 Aligned_cols=417 Identities=59% Similarity=1.048 Sum_probs=372.3
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe-----CCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEe
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH-----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVN 75 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~-----~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~n 75 (420)
||||+|+++...........+.+|+++|+|||||++|++.. +.+++||+||+|+|...+.||+.+++++++++||
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~N 80 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQN 80 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEE
Confidence 99999999755443323356788999999999999999975 5689999999999987899999999999999999
Q ss_pred eEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHhH-HHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecC
Q 014715 76 GEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE-NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLD 152 (420)
Q Consensus 76 G~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~-~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~ 152 (420)
|||||+.+|+++| .|+.|++.||+|+|+++|++||. +++++|+|+|||++||..+++++++||++|+|||||++..+
T Consensus 81 GEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~~G~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~ 160 (586)
T PTZ00077 81 GEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEYGPKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKD 160 (586)
T ss_pred EEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCHHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecC
Confidence 9999999999999 57899999999999999999999 99999999999999999999999999999999999987546
Q ss_pred cEEEEeeCccccccccccceeeCCCcEEEccC--CeeEEeeCCCCCCCC--CCCCCCcHHHHHHHHHHHhhhhcccccce
Q 014715 153 GSIWISSELKGLNDDCEHFEAFPPGHLYSSKS--GGLKRWYNPTWYSEA--IPSTPYDPLVLRQAFENAVIKRLMTDVPF 228 (420)
Q Consensus 153 ~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~aV~~rl~~~~~v 228 (420)
+.++||||+|+|...+.+|++|||||++.++. ...++||+|.|.... .++.++.+++++++|.+||++|+.+++|+
T Consensus 161 g~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpv 240 (586)
T PTZ00077 161 GSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPF 240 (586)
T ss_pred CeEEEEecHHHHHHhcCCEEEeCCCcEEEecCCcceeEEecCCcccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 78999999999999899999999999998864 357899998775322 23344567899999999999999999999
Q ss_pred eEEecCCcchHHHHHHHHHHhcccc--cccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHHH
Q 014715 229 GVLLSGGLDSSLVASITARHLAGTK--AARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (420)
Q Consensus 229 ~~~LSGGlDSs~iaa~~~~~~~~~~--~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~ 306 (420)
|++||||+|||+|++++++...+.. ..+.+..+++|||+++++++|..+|+++|+++|++|+++.++.++.++.++++
T Consensus 241 Gv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 241 GLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLEGSPDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred EEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCCCCchHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 9999999999999999998753210 00011247999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhHHHHHHHHHhhhcccchhhHH
Q 014715 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKS 386 (420)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~ 386 (420)
++++++|+.+.++.++++|++++.+++.|++|+|||+|||||||||.+|+++++...|..|+.++++.++.++|.|.||+
T Consensus 321 i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~ 400 (586)
T PTZ00077 321 IYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELFGGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKA 400 (586)
T ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhccCcHhhhhCcchHHHHHHHHHHHHHHhccCCchhhHH
Confidence 99999998777888999999999999999999999999999999999998887766677888777888999999999999
Q ss_pred HhhcCcccccCcCCHHHHHHHHcCCcccccc
Q 014715 387 TSAWGLEARVPFLDKDFINVAMAIDPEWKMV 417 (420)
Q Consensus 387 ~~~~gie~r~PfLd~~lv~~a~~lP~~~k~~ 417 (420)
+|+||+|+|+||||++||++|++||+++|+.
T Consensus 401 ~ma~glE~RvPFLD~~~v~~a~~ip~~~K~~ 431 (586)
T PTZ00077 401 TMAWGIEARVPFLDKDFLEYVMNIDPKYKMC 431 (586)
T ss_pred HHhcCceeecCcCCHHHHHHHHhCCHHHhcC
Confidence 9999999999999999999999999999985
No 4
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-95 Score=672.80 Aligned_cols=414 Identities=67% Similarity=1.134 Sum_probs=387.6
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEeeEEcC
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (420)
||||+.++..+ .+.............+.|||||.+|.+..+...++|.||+++++..+.||+.+.++.+++..||||||
T Consensus 1 MCGI~Av~~~~-~~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYN 79 (543)
T KOG0571|consen 1 MCGILAVLGHE-DSEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYN 79 (543)
T ss_pred CCceeeeeccc-chhhcChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEEEEECceecc
Confidence 99999999832 22222333455667889999999999998888999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCccCCChHHHHHHHHHHH-hHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEee
Q 014715 81 HEALRERLTNHKFRTGSDCDVIAHLYEEY-GENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (420)
Q Consensus 81 ~~~L~~~l~~~~~~~~~d~e~l~~~~~~~-g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (420)
+.+|+..+..+.|+|.||+|+|+++|+++ +.++...|+|+|||+++|...++++++||++|++||||+++.++.++|||
T Consensus 80 H~~Lr~~~~~~~~~T~sDcEvIi~lY~khg~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aS 159 (543)
T KOG0571|consen 80 HKKLREHCKDFEFQTGSDCEVIIHLYEKHGGEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFAS 159 (543)
T ss_pred HHHHHHHhhhcccccCCCceeeeehHhhcCchhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEee
Confidence 99999999778999999999999999999 69999999999999999999899999999999999999998889999999
Q ss_pred CccccccccccceeeCCCcEEEccCCeeEEeeCCCCCCCCCCCCCCcHHHHHHHHHHHhhhhcccccceeEEecCCcchH
Q 014715 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (420)
Q Consensus 160 e~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs 239 (420)
|.|+|...|+.|...||||++..+.+++.+|++|+|.....|+.......+++.|.+||++||.+++|+|++||||||||
T Consensus 160 e~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSS 239 (543)
T KOG0571|consen 160 EMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEWFDENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSS 239 (543)
T ss_pred ehhhhhhhhhceeecCCcceeecccccccCCCCchhhhccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHH
Confidence 99999999999999999999999888899999999998878887777888999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHHHHHhhccCCccccc
Q 014715 240 LVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIR 319 (420)
Q Consensus 240 ~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (420)
+||+++++.+.+.+. +.|.++++|++|+++++|...|++||+++|+.||++.++.++.++.++++++++|++++++++
T Consensus 240 LvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIR 317 (543)
T KOG0571|consen 240 LVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDLLAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIR 317 (543)
T ss_pred HHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhHHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEe
Confidence 999999998865322 235689999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhHHHHHHHHHhhhcccchhhHHHhhcCcccccCcC
Q 014715 320 ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFL 399 (420)
Q Consensus 320 ~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r~PfL 399 (420)
.+++||+++++++.+|++++|||+|+||+||||-+|+++|+.+.|++|.+++++.|+.++++|.||..|+||+|+|+|||
T Consensus 318 astpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYfh~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFL 397 (543)
T KOG0571|consen 318 ASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYFHKAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFL 397 (543)
T ss_pred cCCchHHHHHHHHhcceEEEEecCCchhhhcceeeeecCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCcccccc
Q 014715 400 DKDFINVAMAIDPEWKMV 417 (420)
Q Consensus 400 d~~lv~~a~~lP~~~k~~ 417 (420)
|+++++++++|||++|++
T Consensus 398 Dk~F~~~~~sldPe~K~~ 415 (543)
T KOG0571|consen 398 DKRFLELAMSLDPEEKMI 415 (543)
T ss_pred cHHHHHHHhcCChhHhcC
Confidence 999999999999999985
No 5
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=1.3e-83 Score=662.54 Aligned_cols=403 Identities=31% Similarity=0.538 Sum_probs=336.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCCeEEEEeeeeecCC-CCCCCCeeecCCcEEEEEeeEEc
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDP-ASGDQPLYNEDKKIVVTVNGEIY 79 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~-~~~~qP~~~~~~~~~~~~nG~i~ 79 (420)
||||+|++..++... ....+.+|+++|+|||||++|+|..+++++||+||++++. ..+.||+.+++++++++||||||
T Consensus 1 McGI~G~~~~~~~~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiy 79 (589)
T TIGR03104 1 MCGICGEIRFDGQAP-DVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIY 79 (589)
T ss_pred CcEEEEEEecCCCcc-hHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEec
Confidence 999999996554332 2456889999999999999999999999999999999986 46899999988899999999999
Q ss_pred ChHHHHHHh--cCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEE
Q 014715 80 NHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWI 157 (420)
Q Consensus 80 n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~f 157 (420)
|+.||+++| .|+.|.+.||+|+++++|++||.+++++++|+|||++||+.+++++++||++|+|||||+.. ++.++|
T Consensus 80 N~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~f 158 (589)
T TIGR03104 80 NYRELRAELEALGYRFFSDGDTEVILKAYHAWGRDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRF 158 (589)
T ss_pred CHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHHHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEE
Confidence 999999999 58899999999999999999999999999999999999999999999999999999999885 788999
Q ss_pred eeCccccccc----------------------------cccceeeCCCcEEEcc-CC--eeEEeeCCCCCCC---CCCCC
Q 014715 158 SSELKGLNDD----------------------------CEHFEAFPPGHLYSSK-SG--GLKRWYNPTWYSE---AIPST 203 (420)
Q Consensus 158 aSe~~~l~~~----------------------------~~~i~~l~pG~~~~~~-~~--~~~~~~~~~~~~~---~~~~~ 203 (420)
|||+++|+.. +++|++||||+++.++ .+ ..++||++..... ...+.
T Consensus 159 aSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~ 238 (589)
T TIGR03104 159 ASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTE 238 (589)
T ss_pred EeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCH
Confidence 9999998642 4689999999999885 33 3568998764221 11123
Q ss_pred CCcHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC-----CcHHHH
Q 014715 204 PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYA 278 (420)
Q Consensus 204 ~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-----~d~~~A 278 (420)
++.+++++++|.+||++|+.++.|||++||||+|||+|++++++... .++.|||++|++. +|..+|
T Consensus 239 ~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~~---------~~l~tftigf~~~~~~~~dE~~~A 309 (589)
T TIGR03104 239 ADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAGV---------DGLRTFSIGFEDVGGEKGDEFEYS 309 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhcC---------CCceEEEEEecCCCCCCCChHHHH
Confidence 34568899999999999999999999999999999999999887542 4799999999753 799999
Q ss_pred HHHHHHhCCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCC
Q 014715 279 KEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA 358 (420)
Q Consensus 279 ~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~ 358 (420)
+++|+++|++|+++.++++++.+.+++++++.+.|.. ..+.+++|++++.+++ +++|+|||+||||+||||++|...
T Consensus 310 ~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~--~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFgGY~~~~~~ 386 (589)
T TIGR03104 310 DIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMV--SHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFGGYHWYPPL 386 (589)
T ss_pred HHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHhC-CCeEEeecCchHhcccCcHhHHHH
Confidence 9999999999999999999999999999998887752 2345778889988876 699999999999999999876421
Q ss_pred CC-----------------hhHH----hH---------HH-------------HH-----HHHH-hhhcccchhhHHHhh
Q 014715 359 PN-----------------KEEF----HR---------ET-------------CH-----KIKA-LHQYDCLRANKSTSA 389 (420)
Q Consensus 359 ~~-----------------~~~~----~~---------e~-------------~~-----~~~~-l~~~~l~r~dr~~~~ 389 (420)
.. ...+ .. ++ .. +++. +....|.|.||++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa 466 (589)
T TIGR03104 387 AAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSGEFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMA 466 (589)
T ss_pred HhhccCchHHHHHHHhccCHHHHHHHhhhhhhccchhHHHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhh
Confidence 00 0000 00 00 00 0111 111235689999999
Q ss_pred cCcccccCcCCHHHHHHHHcCCcccccc
Q 014715 390 WGLEARVPFLDKDFINVAMAIDPEWKMV 417 (420)
Q Consensus 390 ~gie~r~PfLd~~lv~~a~~lP~~~k~~ 417 (420)
+|+|+|+||||++||+||++||+++|+.
T Consensus 467 ~svE~R~PFLD~~lve~a~~lP~~~k~~ 494 (589)
T TIGR03104 467 WGLEARVPFLDHELVELAARIPPELKLA 494 (589)
T ss_pred ccccccCCccCHHHHHHHHhCCHHHhcC
Confidence 9999999999999999999999999975
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-82 Score=645.26 Aligned_cols=405 Identities=40% Similarity=0.674 Sum_probs=361.0
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEeeEEcC
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (420)
||||+|+++.++... ....+.+|.+.|.|||||.+|+|...++.+||+||+++|...+.||+.+.+++++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN 79 (542)
T COG0367 1 MCGIAGILNFKNLID-AKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYN 79 (542)
T ss_pred CCceeeeeccccccc-chHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeee
Confidence 999999999762222 2566889999999999999999999999999999999998889999998778899999999999
Q ss_pred hHHHHHHh--cCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEe
Q 014715 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (420)
Q Consensus 81 ~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~fa 158 (420)
+.||+++| .|+.|.|.+|||+|+++|++||.+++++++|+|||++||..+++++++|||+|+|||||+.. ++.++||
T Consensus 80 ~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~fa 158 (542)
T COG0367 80 VEELRKELREAGYEFRTYSDTEVILTLYEEWGEDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFA 158 (542)
T ss_pred HHHHHHHHHhcCceeccccchHHHHHHHHHHHHHHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEE
Confidence 99999999 59999999999999999999999999999999999999999999999999999999999986 6679999
Q ss_pred eCccccccc-----cccceeeCCCcEEEccCCe-eEEeeCCCCCCCCCCCCCCcHHHHHHHHHHHhhhhcccccceeEEe
Q 014715 159 SELKGLNDD-----CEHFEAFPPGHLYSSKSGG-LKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLL 232 (420)
Q Consensus 159 Se~~~l~~~-----~~~i~~l~pG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~~~L 232 (420)
||+|+|+.. +++|++||||+.+.++.++ +++||++.+.... .+..+..++++++|.++|++|+.+++|+|++|
T Consensus 159 SE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~l 237 (542)
T COG0367 159 SEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRRYWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFL 237 (542)
T ss_pred echhhhhhCCcccccCCeEEcCCCcEEEEcCCCceeeeecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEe
Confidence 999999999 9999999999999998766 8999998776543 34455689999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCC--cHHHHHHHHHHhCCCceEEEechhhhHHHHHHHHHhh
Q 014715 233 SGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHV 310 (420)
Q Consensus 233 SGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 310 (420)
|||+|||+||+++++.... ....+||+++++++ |.++|+++|+.+|++|+.+.++++++.+.+++++++.
T Consensus 238 SGGlDSS~Iaa~a~~~~~~--------~~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~ 309 (542)
T COG0367 238 SGGLDSSLIAAIAAEELGK--------EGKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVVKAL 309 (542)
T ss_pred CCCccHHHHHHHHHHhccc--------cceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhc
Confidence 9999999999999988642 12235999998774 9999999999999999999999999999999999999
Q ss_pred ccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccccccc-ccccCCCCh-hHHhHHHHHHHHHhhhcccchhhHHHh
Q 014715 311 ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY-LYFHKAPNK-EEFHRETCHKIKALHQYDCLRANKSTS 388 (420)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy-~~~~~~~~~-~~~~~e~~~~~~~l~~~~l~r~dr~~~ 388 (420)
+.|.. +...+++|++++.+++.|.+|+|||+||||||||| +++...+.. ..+.+++..++......++.|++++.+
T Consensus 310 ~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 387 (542)
T COG0367 310 DTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADELFGGYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAA 387 (542)
T ss_pred CCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHHHhcCCchhhhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 99874 56788999999999999999999999999999999 455554444 334455666666555556788999999
Q ss_pred hcCcccccCcCCHHHHHHHHcCCccccccc
Q 014715 389 AWGLEARVPFLDKDFINVAMAIDPEWKMVL 418 (420)
Q Consensus 389 ~~gie~r~PfLd~~lv~~a~~lP~~~k~~~ 418 (420)
++++|.|+||||.+++.+++++|++.|+..
T Consensus 388 ~~~~E~r~p~ld~~~~~l~l~~~~~~~i~~ 417 (542)
T COG0367 388 AFGVEARVPFLDRELVDLALKIPPEHKLNR 417 (542)
T ss_pred hcccccccCchHHHHHHHHhcCCcccccch
Confidence 999999999999999999999999998864
No 7
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=4.8e-80 Score=624.28 Aligned_cols=401 Identities=44% Similarity=0.734 Sum_probs=343.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceE-EeCCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEeeEEcChH
Q 014715 4 ILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE 82 (420)
Q Consensus 4 I~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~-~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n~~ 82 (420)
|+|+++.++......+.+.+|+++|+|||||++|+| ..+++++||+||++++...+.||+.+.+++++++|||||||+.
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~ 80 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHE 80 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHH
Confidence 678888776543334578999999999999999999 8889999999999999876799999988999999999999999
Q ss_pred HHHHHh--cCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeC
Q 014715 83 ALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (420)
Q Consensus 83 ~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (420)
||+++| .|+.|++.||+|+++++|++||.+++++++|+|||++||+++++++++||++|+|||||+.. ++.++||||
T Consensus 81 eL~~~l~~~g~~~~~~~D~e~il~~y~~~g~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe 159 (467)
T TIGR01536 81 ELREELEAKGYTFQTDSDTEVILHLYEEWGEECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASE 159 (467)
T ss_pred HHHHHHHhcCCccCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEec
Confidence 999999 68899999999999999999999999999999999999999999999999999999999986 788999999
Q ss_pred ccccccc----------------------------cccceeeCCCcEEEccCCe---eEEeeCCCCCCCCCCCCCCcHHH
Q 014715 161 LKGLNDD----------------------------CEHFEAFPPGHLYSSKSGG---LKRWYNPTWYSEAIPSTPYDPLV 209 (420)
Q Consensus 161 ~~~l~~~----------------------------~~~i~~l~pG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 209 (420)
+++|... +++|++||||+++.++.++ .++||.+. .....+.++.+++
T Consensus 160 ~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~ 237 (467)
T TIGR01536 160 IKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWERR--DEHTDSEEDLVDE 237 (467)
T ss_pred HHHHHhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecCCC--CCCCCCHHHHHHH
Confidence 9987532 4689999999999886432 34566522 1111233456789
Q ss_pred HHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC---CCcHHHHHHHHHHhC
Q 014715 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG 286 (420)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~---~~d~~~A~~vA~~lg 286 (420)
++++|.+||++|+.++.|+|++||||+||++|++++++.... .++.+||+++++ .+|..+|+++|+++|
T Consensus 238 l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~--------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg 309 (467)
T TIGR01536 238 LRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPR--------GPVHTFSIGFEGSPDFDESPYARKVADHLG 309 (467)
T ss_pred HHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCC--------CCceEEEEecCCCCCCChHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999876421 368999999873 367889999999999
Q ss_pred CCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhH
Q 014715 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHR 366 (420)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~ 366 (420)
++|+++.++++++.+.+++.+++.+.|. ...+.++++.+++.+++.|++|+|||+||||+||||++|...+....+.+
T Consensus 310 ~~~~~i~~~~~~~~~~~~~~v~~~~~p~--~~~~~~~~~~l~~~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~~~~~~ 387 (467)
T TIGR01536 310 TEHHEVLFSVEEGLDALPEVIYHLEDPT--TIRASIPLYLLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALRE 387 (467)
T ss_pred CcCeEEECCHHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHhcCCEEEEecCcchhcccCchhhhhccccHHHHH
Confidence 9999999999999999999998887554 34566788999999999999999999999999999999876544333323
Q ss_pred HH-HHHHHHhhhcccchhhHHHhhcCcccccCcCCHHHHHHHHcCCcccccc
Q 014715 367 ET-CHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMV 417 (420)
Q Consensus 367 e~-~~~~~~l~~~~l~r~dr~~~~~gie~r~PfLd~~lv~~a~~lP~~~k~~ 417 (420)
+. ..+++.+...++.+.||++|++|+|+|+||||++||+|+++||+++|+.
T Consensus 388 ~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD~~lv~~a~~lp~~~k~~ 439 (467)
T TIGR01536 388 ELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLDHELVEYALSIPPEMKLR 439 (467)
T ss_pred HHHHHHHHHhCcccchhHHHHHhhccccccCCcCCHHHHHHHHhCCHHHhcC
Confidence 32 3345566666788889999999999999999999999999999999974
No 8
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=1e-77 Score=627.06 Aligned_cols=343 Identities=32% Similarity=0.547 Sum_probs=293.6
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEeeEEcC
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (420)
||||+|+++.++........+.+|+++|.|||||++|+|..+++++||+|+++++...+.||+.+.+++++++|||||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N 80 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYN 80 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECC
Confidence 99999999755432112356889999999999999999999999999999999987778999999999999999999999
Q ss_pred hHHHHHHh--cCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEe
Q 014715 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (420)
Q Consensus 81 ~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~fa 158 (420)
+.||+++| .|+.|.+.||+|+++++|++||.+++++|+|+|||++||+.+++++++||++|++||||+...++.++||
T Consensus 81 ~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~fa 160 (628)
T TIGR03108 81 FQELVAELQALGHVFRTRSDTEVIVHAWEEWGEACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFG 160 (628)
T ss_pred HHHHHHHHHhcCCccCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEE
Confidence 99999999 5889999999999999999999999999999999999999999999999999999999986446789999
Q ss_pred eCccccccc---------------------------cccceeeCCCcEEEccCC----eeEEeeCCCCCCCCCCCCCCcH
Q 014715 159 SELKGLNDD---------------------------CEHFEAFPPGHLYSSKSG----GLKRWYNPTWYSEAIPSTPYDP 207 (420)
Q Consensus 159 Se~~~l~~~---------------------------~~~i~~l~pG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 207 (420)
||+++|+.. +++|++|||||++.++.+ ..++||++...+....+.++.+
T Consensus 161 Se~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~ 240 (628)
T TIGR03108 161 SELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADAL 240 (628)
T ss_pred ecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHH
Confidence 999988542 478999999999888643 2467998754322222334567
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHh
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~l 285 (420)
++++++|.+||+.|+.++.|||++||||+|||+|++++++... .++.|||+++++ .+|..+|+++|+++
T Consensus 241 e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~~---------~~i~t~s~~~~~~~~dE~~~A~~vA~~~ 311 (628)
T TIGR03108 241 AELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLSD---------TPVNTCSIAFDDPAFDESAYARQVAERY 311 (628)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhcC---------CCCcEEEEecCCCCCChHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999887542 479999999975 48999999999999
Q ss_pred CCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccccccccccc
Q 014715 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 356 (420)
Q Consensus 286 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~ 356 (420)
|++|+++.+++++ .+.++++++..+.|.. ..+.++.+.+++.+++ +++|+|||+||||+|+||++|.
T Consensus 312 g~~h~~~~~~~~~-~~~~~~~~~~~~~P~~--~~~~~~~~~~~~~a~~-~~kV~LsG~GgDElf~GY~~~~ 378 (628)
T TIGR03108 312 GTNHRVETVDPDD-FSLVDRLAGLYDEPFA--DSSALPTYRVCELARK-RVTVALSGDGGDELFAGYRRYR 378 (628)
T ss_pred CCCCeEEecCHHH-HHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHC-CCCEEEeccchhhcccCcHHHH
Confidence 9999999998877 5677777777776642 2345778888887765 7999999999999999997653
No 9
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-46 Score=349.58 Aligned_cols=394 Identities=22% Similarity=0.298 Sum_probs=276.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCC----eEEEEeeeeecCCCCCCCCeeecCCcEEEEEee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----FYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~----~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG 76 (420)
||||+..+..+..-. ....-..|...+..||||.++....+. +.+.-.-|+..| ....||.... .++++.|||
T Consensus 1 MCGI~~s~~~~~~l~-~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d-~~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLALN-SELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVED-DRYVFLFNG 77 (520)
T ss_pred CceEEEeecCCcccc-ccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceecc-cceEEEecc
Confidence 999999988765422 233345677788999999876654432 333333455555 2357998754 458999999
Q ss_pred EEcChHHHHHHhcCCCccCCChHHHHHHHHHHHh-----HHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEec
Q 014715 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG-----ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL 151 (420)
Q Consensus 77 ~i~n~~~L~~~l~~~~~~~~~d~e~l~~~~~~~g-----~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~ 151 (420)
||||.+. ..+..|+..|++.+...+ .+.++.+.|+|++++||.+++++++.||++|+|+|.|....
T Consensus 78 eIyn~~~---------s~~~~d~~~l~~~l~~~~e~~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~ 148 (520)
T KOG0573|consen 78 EIYNGEK---------SDTLFDTDILAEELSNLKESGDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDP 148 (520)
T ss_pred eeccCCC---------ccccchHHHHHHHHhcCCccccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEecc
Confidence 9999652 345679999999887654 56778899999999999999999999999999999999864
Q ss_pred CcEEEEeeCccccccccccceeeCCCcEEEccCCeeEEeeCCC----CCCCCCCCC-------------CCcHHHHHHHH
Q 014715 152 DGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPT----WYSEAIPST-------------PYDPLVLRQAF 214 (420)
Q Consensus 152 ~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------~~~~~~l~~~l 214 (420)
.+.....|.... .-..|+++||+-.......-...|.... ..+ ..++. .+.+..+.+.+
T Consensus 149 ~~f~~~~st~g~---~~~~i~e~~~~F~~~~~d~~~w~y~s~~le~~~~~-s~~p~~~i~~~~l~~~~~~~~v~~l~~~l 224 (520)
T KOG0573|consen 149 FNFSLVLSTVGT---SGKLIYEVPPVFRNKLTDRVPWPYLSTKLENSLGP-SLPPLCDISEIFLNQSHRSEVVSGLHTGL 224 (520)
T ss_pred CceeEEeecccc---CCccccccCchhhhccCCccccccccceecccCCC-cCCCccchHHHHhhhHHHHHHHhhhHHHH
Confidence 443333332211 1234668899833322211111111100 000 01111 11234566677
Q ss_pred HHHhhhhcc---------------cccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC---C-----
Q 014715 215 ENAVIKRLM---------------TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---G----- 271 (420)
Q Consensus 215 ~~aV~~rl~---------------~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~---~----- 271 (420)
.++++.|.. -..+|+|++|||+||++||.++....+.. .+|..+++.|. +
T Consensus 225 ~ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~n-------e~IdLINVaF~n~e~~~~~~ 297 (520)
T KOG0573|consen 225 RDSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPEN-------EPIDLINVAFGNPEGSKEQN 297 (520)
T ss_pred HHHHhhhhhccChhHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCC-------CceeEEEeeccCCCcccccC
Confidence 777776642 13689999999999999999999988653 67888888873 2
Q ss_pred CCcHHHHHHHHHHhCC-------CceEEEechhhhHHHHHHHHHhhccCCc--ccccchhHHHHHHHH---------HHh
Q 014715 272 SPDLKYAKEVADYLGT-------VHHEFHFTVQDGIDAIEEVIYHVETYDV--TTIRASTPMFLMSRK---------IKS 333 (420)
Q Consensus 272 ~~d~~~A~~vA~~lg~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~---------a~~ 333 (420)
.+|++.+++-++++.. .+.+++++.+++....+. +.++-.|.. +..+.+.++|++++. -.+
T Consensus 298 ~PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~-I~~LiyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~ 376 (520)
T KOG0573|consen 298 VPDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEH-IKHLIYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYR 376 (520)
T ss_pred CccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHH-HHHhhCcCccccccccceEEEEeeccccccccCccccc
Confidence 2899999988888853 334556666666554443 444433322 233445566766651 123
Q ss_pred cCCEEEEeccCCcccccccccccCC---CChhHHhHHHHHHHHHhhhcccchhhHHHhhcCcccccCcCCHHHHHHHHcC
Q 014715 334 LGVKMVISGEGSDEIFGGYLYFHKA---PNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAI 410 (420)
Q Consensus 334 ~g~~v~ltG~GgDelf~Gy~~~~~~---~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r~PfLd~~lv~~a~~l 410 (420)
..++|+++|.||||+||||.+|+.. +..+.+.+|+.+++.++..+||.|+||++..+|+|+|+||||..||+|..++
T Consensus 377 s~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~rIs~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l 456 (520)
T KOG0573|consen 377 SYARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLFRISHRNLGRDDRVIADSGKEVRSPFLDENVVKLSNAL 456 (520)
T ss_pred cccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHhhhhhcccCccchhhhccCceEeccchHHHHHHHHHhc
Confidence 4579999999999999999998733 2334688999999999999999999999999999999999999999999999
Q ss_pred Cccccccc
Q 014715 411 DPEWKMVL 418 (420)
Q Consensus 411 P~~~k~~~ 418 (420)
|...|++|
T Consensus 457 ~~~~k~~l 464 (520)
T KOG0573|consen 457 PVSVKMML 464 (520)
T ss_pred chhHHhhh
Confidence 99999876
No 10
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=1.9e-40 Score=302.88 Aligned_cols=189 Identities=42% Similarity=0.768 Sum_probs=169.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEeeEEcCh
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n~ 81 (420)
|||+|+++.+.... ....+..|+.+|+|||||+++++..+++++||+|+++.+...+.||+...++++++++||+|||+
T Consensus 1 cGI~g~~~~~~~~~-~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~ 79 (220)
T cd00712 1 CGIAGIIGLDGASV-DRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNY 79 (220)
T ss_pred CeEEEEEeCCCCcc-hHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCH
Confidence 99999997654222 34668899999999999999999999999999999999876789999988889999999999999
Q ss_pred HHHHHHh--cCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEee
Q 014715 82 EALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (420)
Q Consensus 82 ~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (420)
.+|+++| .++.+.+.+|+|+++++|++||.++++.++|+||+++||+++++++++||++|.+||||+.. ++.++|||
T Consensus 80 ~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aS 158 (220)
T cd00712 80 RELRAELEALGHRFRTHSDTEVILHLYEEWGEDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFAS 158 (220)
T ss_pred HHHHHHHHhcCCcCCCCChHHHHHHHHHHHhHHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEc
Confidence 9999998 56778899999999999999999999999999999999999999999999999999999986 67899999
Q ss_pred Cccccccc---------------------------cccceeeCCCcEEEccCC--eeEEeeC
Q 014715 160 ELKGLNDD---------------------------CEHFEAFPPGHLYSSKSG--GLKRWYN 192 (420)
Q Consensus 160 e~~~l~~~---------------------------~~~i~~l~pG~~~~~~~~--~~~~~~~ 192 (420)
|+++|... +++|++||||+++.++.+ +.++||+
T Consensus 159 e~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 159 ELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred chHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 99998652 468999999999988755 3568884
No 11
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=7.3e-37 Score=268.81 Aligned_cols=168 Identities=26% Similarity=0.387 Sum_probs=141.5
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe----CCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~----~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG 76 (420)
||||+|+++.+.........+.+|++.|+|||||+++++.. ..+.++|+||++++...+.||+...+++++++|||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NG 80 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNG 80 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECC
Confidence 99999999754332111245789999999999999999986 35889999999999767899999887889999999
Q ss_pred EEcChHHHHHHhcCCCccCCChHHHHHHHHHHHh------HHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 014715 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWG 150 (420)
Q Consensus 77 ~i~n~~~L~~~l~~~~~~~~~d~e~l~~~~~~~g------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~ 150 (420)
+|||+.+|++ +.+|+|+|+++|++|| .+++++|+|+|||++||+.+++++++|||+|+|||||+..
T Consensus 81 eIyN~~~l~~--------s~sDtEvi~~l~~~~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~ 152 (181)
T cd03766 81 ELYNIDGVED--------EENDTEVIFELLANCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLD 152 (181)
T ss_pred EEECcccccC--------CCCHHHHHHHHHHHHhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEee
Confidence 9999999863 7899999999999999 4899999999999999999999999999999999999986
Q ss_pred c-CcEEEEeeCccccccccccceeeCCCc
Q 014715 151 L-DGSIWISSELKGLNDDCEHFEAFPPGH 178 (420)
Q Consensus 151 ~-~~~~~faSe~~~l~~~~~~i~~l~pG~ 178 (420)
. ++.++|||+..... .....+++|+.
T Consensus 153 ~~~~~l~~aS~~~~~~--~~~~~e~~~~g 179 (181)
T cd03766 153 PNGFELSISSVSGSSS--GSGFQEVLAGG 179 (181)
T ss_pred CCCCcEEEEEccCCCC--CCceEECCCCc
Confidence 4 67899999865332 12456667653
No 12
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.1e-36 Score=295.77 Aligned_cols=217 Identities=21% Similarity=0.379 Sum_probs=171.6
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC---------------------------CeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (420)
||||+|+++... ....+..|+.+|+|||||++|++..+ .+++||+||+|
T Consensus 1 MCGI~G~~~~~~----~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at 76 (445)
T PRK08525 1 MCAVVGVINSKN----AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYST 76 (445)
T ss_pred CceEEEEEcCcc----HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeeccccc
Confidence 999999998542 24556789999999999999998732 37899999999
Q ss_pred cCCC--CCCCCeee--cCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh--------HHHhhhccC
Q 014715 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (420)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g--------~~~~~~l~G 119 (420)
.|.. .+.||+.+ .+++++++|||+|||+.+|+++| .|+.|++.||+|+++++|.+++ .+++++|+|
T Consensus 77 ~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~~ea~~~~~~~L~G 156 (445)
T PRK08525 77 AGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIG 156 (445)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 9963 68999987 56889999999999999999999 6899999999999999998876 578999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccC--CeeE--EeeCCC
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKS--GGLK--RWYNPT 194 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~--~~~~--~~~~~~ 194 (420)
+||++++++ ++++++||++|+|||||+...++.++||||.++|... .+.++.++||+++.++. ++++ +++...
T Consensus 157 ~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~~~~~ 234 (445)
T PRK08525 157 AYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQLFEPT 234 (445)
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEecCCC
Confidence 999999997 7999999999999999987535689999999999543 44578899999988863 3332 233321
Q ss_pred -------CCCCCCCCC---CCcHHHHHHHHHHHhhhhcc
Q 014715 195 -------WYSEAIPST---PYDPLVLRQAFENAVIKRLM 223 (420)
Q Consensus 195 -------~~~~~~~~~---~~~~~~l~~~l~~aV~~rl~ 223 (420)
|.....|++ ...+-+++..+-+...+.+.
T Consensus 235 ~~~c~fe~iY~~rpds~~~g~~v~~~R~~~G~~La~~~~ 273 (445)
T PRK08525 235 PRICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFP 273 (445)
T ss_pred CccceeEeeeecCCCceECCEEHHHHHHHHHHHHHHHhc
Confidence 111122332 23455677777666665554
No 13
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.4e-35 Score=288.48 Aligned_cols=233 Identities=24% Similarity=0.362 Sum_probs=179.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe---------------------------CCeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (420)
||||+|+++... ....+..++.+|+|||||++|++.. +++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT 86 (475)
T PRK07631 11 ECGVFGIWGHEE----AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYAT 86 (475)
T ss_pred CCcEEEEECCch----hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccc
Confidence 999999998532 2455678899999999999998852 247899999999
Q ss_pred cCCC--CCCCCee--ecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh--------HHHhhhccC
Q 014715 54 IDPA--SGDQPLY--NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (420)
Q Consensus 54 ~~~~--~~~qP~~--~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g--------~~~~~~l~G 119 (420)
.|.. .+.||+. +.+++++++|||+|||+.+|+++| .|+.|++.||+|+++++|.+++ .+++++++|
T Consensus 87 ~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G 166 (475)
T PRK07631 87 AGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKG 166 (475)
T ss_pred cCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 9963 5899995 456889999999999999999999 6889999999999999999987 468999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccCCeeEEeeC-CCCC-
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRWYN-PTWY- 196 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~~~-~~~~- 196 (420)
+||+++++. ++++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++.+.+-. +...
T Consensus 167 ~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~ 243 (475)
T PRK07631 167 AYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAPNQNR 243 (475)
T ss_pred CceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCCCCCc
Confidence 999999997 78999999999999999986 6789999999999654 3468889999999887655443321 1100
Q ss_pred --------CCCCCCC---CCcHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHH
Q 014715 197 --------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVAS 243 (420)
Q Consensus 197 --------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa 243 (420)
....|++ ...+.+.|..+-+...+....+. -.+.+=.||+..+|
T Consensus 244 ~~C~fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~~~~~---D~VvpVP~s~~~~A 298 (475)
T PRK07631 244 SICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAPVEA---DVVTGVPDSSISAA 298 (475)
T ss_pred ccceEEEEEeecCCcccCCeEHHHHHHHHHHHHHhhCCCCC---cEEEEechhHHHHH
Confidence 0122332 33567777777776666443221 23444456665544
No 14
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.2e-34 Score=288.86 Aligned_cols=234 Identities=26% Similarity=0.342 Sum_probs=183.2
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC----------------------------CeEEEEeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (420)
||||+|+++... ....+..++.+|+|||||++|+.+.+ ++++||+||+
T Consensus 21 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~s 96 (479)
T PRK09123 21 ECGVFGILGHPD----AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYS 96 (479)
T ss_pred cCeEEEEEcCcc----hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecc
Confidence 999999998542 24557788999999999999998632 3688999999
Q ss_pred ecCC--CCCCCCeeec--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh--------HHHhhhcc
Q 014715 53 IIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (420)
Q Consensus 53 ~~~~--~~~~qP~~~~--~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g--------~~~~~~l~ 118 (420)
|.|. ..+.||+... .++++++|||+|+|+.+|+++| .|+.|++.||+|+|++++.+++ .+++++|+
T Consensus 97 T~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~ 176 (479)
T PRK09123 97 TTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVE 176 (479)
T ss_pred cCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Confidence 9995 3689999863 6789999999999999999999 6889999999999999998765 67899999
Q ss_pred CceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccCCe-eEEeeCCCCC
Q 014715 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG-LKRWYNPTWY 196 (420)
Q Consensus 119 G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~-~~~~~~~~~~ 196 (420)
|+||+++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.+. ++.+......
T Consensus 177 G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~~~~ 253 (479)
T PRK09123 177 GAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPFPPQ 253 (479)
T ss_pred cceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEecCCC
Confidence 9999999997 79999999999999999985 6789999999999653 4568899999999887554 5433211111
Q ss_pred C----------CCCCC---CCCcHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHH
Q 014715 197 S----------EAIPS---TPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASI 244 (420)
Q Consensus 197 ~----------~~~~~---~~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~ 244 (420)
+ ...|+ ....+.++|..+.+...+....+ .-.+.+-.||+..++.
T Consensus 254 ~~~~C~FE~VYfarPdS~~~g~~vy~~R~~~g~~La~~~~~~---~D~Vv~VP~sg~~~A~ 311 (479)
T PRK09123 254 PARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVD---ADVVVPVPDSGVPAAI 311 (479)
T ss_pred CCCCChhheEEecCCCceECCeEHHHHHHHHHHHHHHhCCCC---CeEEEEcCccHHHHHH
Confidence 1 11232 23456788888888777665432 2234556677766543
No 15
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.7e-35 Score=290.58 Aligned_cols=227 Identities=22% Similarity=0.305 Sum_probs=178.3
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC--------------------------CeEEEEeeeeec
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG--------------------------DFYLAHQRLAII 54 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~--------------------------~~~l~h~rl~~~ 54 (420)
||||+|+++.+. ....+..++.+|+|||+|++|+++.+ ++++||+||+|.
T Consensus 19 mCGI~G~~~~~~----~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~ 94 (474)
T PRK06388 19 DCAVVGFKGGIN----AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTA 94 (474)
T ss_pred CCeEEEEECCcc----hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeec
Confidence 999999998542 24567899999999999999998732 368999999999
Q ss_pred CCC--CCCCCeee--cCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHH----HHh-----HHHhhhccC
Q 014715 55 DPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG-----ENFVDMLDG 119 (420)
Q Consensus 55 ~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~----~~g-----~~~~~~l~G 119 (420)
|.. .+.||+.. ..++++++|||+|+|+.+|+++| .|+.|.+.||+|++++++. +++ .+++++++|
T Consensus 95 G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G 174 (474)
T PRK06388 95 GSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRG 174 (474)
T ss_pred CCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Confidence 953 68999973 36789999999999999999999 6899999999999999994 345 568999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCcccccccc-ccceeeCCCcEEEccCCeeEEeeC-CCC--
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYN-PTW-- 195 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~~~~~~~~~~~~~-~~~-- 195 (420)
+||+++++. ++++++||++|+|||||+.. ++.++||||.++|.... +.|+.|+||+++.++.++.+.++. +..
T Consensus 175 ~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~~~~~ 251 (474)
T PRK06388 175 AYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLDGDKV 251 (474)
T ss_pred ceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecCCCcc
Confidence 999999977 89999999999999999985 66799999999998863 478999999998887665543332 110
Q ss_pred -------CCCCCCCC---CCcHHHHHHHHHHHhhhhcc--cccceeEEecC
Q 014715 196 -------YSEAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLSG 234 (420)
Q Consensus 196 -------~~~~~~~~---~~~~~~l~~~l~~aV~~rl~--~~~~v~~~LSG 234 (420)
.....|++ ...+.+.|..+-+...+... .|.-+.+.+||
T Consensus 252 ~~C~fE~iYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~ 302 (474)
T PRK06388 252 AHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSG 302 (474)
T ss_pred ccceEEEEeecCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCc
Confidence 01122332 23456677777666665543 33346677776
No 16
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.5e-34 Score=285.73 Aligned_cols=183 Identities=25% Similarity=0.404 Sum_probs=157.5
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC----------------------------CeEEEEeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (420)
||||+|+++... ....+..++.+|+|||||++|++..+ ++++||+||+
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~Rys 86 (484)
T PRK07272 11 ECGVFGIWGHPD----AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYA 86 (484)
T ss_pred cCeEEEEECCcc----HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecc
Confidence 999999997532 24567788999999999999998742 3789999999
Q ss_pred ecCCC--CCCCCeee--cCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh--------HHHhhhcc
Q 014715 53 IIDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (420)
Q Consensus 53 ~~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g--------~~~~~~l~ 118 (420)
|.|.. .+.||+.. .+++++++|||+|+|+.+|+++| .|+.|++.||+|+|++++.+++ .+++++++
T Consensus 87 T~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~ 166 (484)
T PRK07272 87 TAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVK 166 (484)
T ss_pred ccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcc
Confidence 99963 58999975 46889999999999999999999 6889999999999999998754 57899999
Q ss_pred CceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccCCeeEE
Q 014715 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR 189 (420)
Q Consensus 119 G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~ 189 (420)
|+||+++++. ++++++|||+|+|||||+...++.++||||.++|... .+.++.|+||+++.++.++.+.
T Consensus 167 G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~~~ 236 (484)
T PRK07272 167 GGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGIQY 236 (484)
T ss_pred CceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCceEE
Confidence 9999999997 7899999999999999987535679999999999765 3568889999999887665443
No 17
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=4e-35 Score=265.89 Aligned_cols=172 Identities=29% Similarity=0.459 Sum_probs=153.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe---------------------------CCeEEEEeeeeec
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (420)
|||+|+++... ....+..|+.+++|||||++|++.. +.+++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (215)
T cd00714 1 CGIVGYIGKRE----AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATH 76 (215)
T ss_pred CEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCC
Confidence 99999997532 2356778999999999999999975 3578999999999
Q ss_pred CC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHhH----------HHhhhccCc
Q 014715 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (420)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~----------~~~~~l~G~ 120 (420)
|. ..+.||+...+++++++|||+|||+.+|+++| .++.+.+.||+|+++++|.+++. ++++.|+|+
T Consensus 77 g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (215)
T cd00714 77 GEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGA 156 (215)
T ss_pred CCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 96 45899999877789999999999999999999 58889999999999999999886 699999999
Q ss_pred eEEEEEECCC-CEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccccccceeeCCCcEEE
Q 014715 121 FSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYS 181 (420)
Q Consensus 121 fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~ 181 (420)
||++++|+.. ++++++|| .|||||+.. ++.++||||.++|...+..+..|.+|.++.
T Consensus 157 fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 157 YALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred eEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 9999999876 49999999 499999985 678999999999999999999999999865
No 18
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.8e-34 Score=285.07 Aligned_cols=228 Identities=25% Similarity=0.309 Sum_probs=174.9
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC---------------------------CeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (420)
||||+|+++.+.. ....+..++.+|+|||||++|+...+ ++++||+||+|
T Consensus 33 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT 109 (500)
T PRK07349 33 ACGVFGVYAPGEE---VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYST 109 (500)
T ss_pred CCeEEEEECCCcC---HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeeccc
Confidence 9999999985432 24556789999999999999997632 36899999999
Q ss_pred cCC--CCCCCCeeec--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH-------Hh---HHHhhhc
Q 014715 54 IDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE-------YG---ENFVDML 117 (420)
Q Consensus 54 ~~~--~~~~qP~~~~--~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~-------~g---~~~~~~l 117 (420)
.|. ..+.||+... .++++++|||+|+|+.+|+++| .|+.|++.||+|+|+++|.+ |+ .++++++
T Consensus 110 ~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l 189 (500)
T PRK07349 110 TGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRC 189 (500)
T ss_pred CCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 996 3589999864 4789999999999999999999 68899999999999999975 33 4688999
Q ss_pred cCceEEEEEECCCCEEEEEEcCCCCccEEEEEec---CcEEEEeeCccccccc-cccceeeCCCcEEEccCCeeEEe-eC
Q 014715 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW-YN 192 (420)
Q Consensus 118 ~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~-~~ 192 (420)
+|+||+++.++ ++++++||++|+|||||+... ++.++||||.++|... .+.++.++||+++.++.++++.+ +.
T Consensus 190 ~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~~~ 267 (500)
T PRK07349 190 QGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFHWA 267 (500)
T ss_pred hhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEecc
Confidence 99999999987 889999999999999998741 3579999999999654 45688999999998876554332 21
Q ss_pred CCC---------CCCCCCCC---CCcHHHHHHHHHHHhhhhcc--cccceeEEec
Q 014715 193 PTW---------YSEAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLS 233 (420)
Q Consensus 193 ~~~---------~~~~~~~~---~~~~~~l~~~l~~aV~~rl~--~~~~v~~~LS 233 (420)
+.. .....|++ ...+.+.|..+-+...+... .|.-+++..|
T Consensus 268 ~~~~~~~C~fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~s 322 (500)
T PRK07349 268 QEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDS 322 (500)
T ss_pred cCCCcceeEEEeeeccCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 110 01122332 33567788777776665443 2333444444
No 19
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.1e-34 Score=281.97 Aligned_cols=235 Identities=24% Similarity=0.354 Sum_probs=182.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC---------------------------CeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (420)
||||+|+++.+. ....+..++.+|+|||||++|++..+ ++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT 86 (471)
T PRK06781 11 ECGVFGIWGHEN----AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYAT 86 (471)
T ss_pred cCeEEEEEcCcc----HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEccc
Confidence 999999998542 23456789999999999999998522 36789999999
Q ss_pred cCCC--CCCCCeee--cCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh--------HHHhhhccC
Q 014715 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (420)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g--------~~~~~~l~G 119 (420)
.|.. .+.||+.. .+++++++|||+|+|+.+|+++| .|+.|++.||+|+|++++.+++ .+++++++|
T Consensus 87 ~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G 166 (471)
T PRK06781 87 AGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKG 166 (471)
T ss_pred CCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 9963 68999964 46789999999999999999999 6888999999999999998876 567899999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccCCeeEE--eeCCCC-
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR--WYNPTW- 195 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~--~~~~~~- 195 (420)
+|++++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++. +..+..
T Consensus 167 ~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~~~~~ 243 (471)
T PRK06781 167 AFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTNEVDH 243 (471)
T ss_pred cEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCcCccc
Confidence 999999997 88999999999999999986 6789999999999754 3457889999999887655433 222110
Q ss_pred -------CCCCCCCC---CCcHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHH
Q 014715 196 -------YSEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASIT 245 (420)
Q Consensus 196 -------~~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~ 245 (420)
.....|++ ...+.+.|..+-+...+....+. =.+.+=.||+..+|..
T Consensus 244 ~~C~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~---D~vv~VP~s~~~~A~~ 300 (471)
T PRK06781 244 AICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEA---DVVTGVPDSSISAAIG 300 (471)
T ss_pred ccceEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCCCCC---cEEEEcChhHHHHHHH
Confidence 01122332 23567778777777776554332 2456678888776643
No 20
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.2e-34 Score=281.25 Aligned_cols=179 Identities=27% Similarity=0.429 Sum_probs=154.2
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe--------------------------CCeEEEEeeeeec
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH--------------------------GDFYLAHQRLAII 54 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~--------------------------~~~~l~h~rl~~~ 54 (420)
||||+|+++. . ....+..++.+|+|||+|++|++.. +++++||+||+|.
T Consensus 4 ~CGI~G~~~~-~----~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~ 78 (442)
T PRK08341 4 KCGIFAAYSE-N----APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTS 78 (442)
T ss_pred ccEEEEEECC-C----cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeecccc
Confidence 9999999982 2 2456788999999999999999762 2578999999999
Q ss_pred CCCCCCCCeeec--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHH----HHh------HHHhhhccCc
Q 014715 55 DPASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG------ENFVDMLDGM 120 (420)
Q Consensus 55 ~~~~~~qP~~~~--~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~----~~g------~~~~~~l~G~ 120 (420)
|...+.||+... ++.++++|||+|+|+.+|+++| .|+.|++.||+|+|++++. ++| .+++++++|+
T Consensus 79 G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~ 158 (442)
T PRK08341 79 GSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGA 158 (442)
T ss_pred CCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCc
Confidence 987899999754 4789999999999999999999 6899999999999987753 333 2468999999
Q ss_pred eEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccccccceeeCCCcEEEccCCeeE
Q 014715 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (420)
Q Consensus 121 fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (420)
||+++.++ ++++++||++|+|||||+.. + .++||||.++|......|+.|+||+++.++.++++
T Consensus 159 yal~i~~~--~~l~a~RD~~GirPL~~G~~-~-~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~~ 222 (442)
T PRK08341 159 YSVAILFD--GKIIVARDPVGFRPLSYGEG-D-GHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEVE 222 (442)
T ss_pred eEEEEEEC--CEEEEEEcCCCceEEEEEEC-C-EEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCceE
Confidence 99999987 89999999999999999973 4 58999999999888888999999999988766543
No 21
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.9e-34 Score=283.42 Aligned_cols=227 Identities=21% Similarity=0.315 Sum_probs=177.0
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC---------------------------CeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (420)
||||+|+++.+.. ....+..++.+|+|||||++|+.+.+ ++++||+|++|
T Consensus 23 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT 99 (510)
T PRK07847 23 ECGVFGVWAPGEE---VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYST 99 (510)
T ss_pred cCeEEEEECCCcC---HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCc
Confidence 9999999985422 24556789999999999999987633 36899999999
Q ss_pred cCCC--CCCCCeeec---CCcEEEEEeeEEcChHHHHHHh--cCC-----CccCCChHHHHHHHHHHHhH---------H
Q 014715 54 IDPA--SGDQPLYNE---DKKIVVTVNGEIYNHEALRERL--TNH-----KFRTGSDCDVIAHLYEEYGE---------N 112 (420)
Q Consensus 54 ~~~~--~~~qP~~~~---~~~~~~~~nG~i~n~~~L~~~l--~~~-----~~~~~~d~e~l~~~~~~~g~---------~ 112 (420)
.|.. .+.||+... .++++++|||+|+|+.+|+++| .++ .|.+.||+|+|++++.+++. +
T Consensus 100 ~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~ 179 (510)
T PRK07847 100 TGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALE 179 (510)
T ss_pred CCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 9864 589999753 6789999999999999999999 455 48999999999999988763 5
Q ss_pred HhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccCCee--EE
Q 014715 113 FVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGL--KR 189 (420)
Q Consensus 113 ~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~--~~ 189 (420)
++++++|+||++++|. ++++++||++|+|||||++. ++.++||||.++|... .+.|+.|+||+++.++.+++ .+
T Consensus 180 ~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~ 256 (510)
T PRK07847 180 LLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTR 256 (510)
T ss_pred HHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEe
Confidence 8999999999999997 78999999999999999986 6779999999999876 67899999999998876543 34
Q ss_pred eeCCCCC-------CCCCCCC---CCcHHHHHHHHHHHhhhhccc--ccceeEEec
Q 014715 190 WYNPTWY-------SEAIPST---PYDPLVLRQAFENAVIKRLMT--DVPFGVLLS 233 (420)
Q Consensus 190 ~~~~~~~-------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~--~~~v~~~LS 233 (420)
+|.+... ....|++ ...+.+.|..+-+...+.... |.=+.|..|
T Consensus 257 ~~~~~~~~C~fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~s 312 (510)
T PRK07847 257 FAEPTPKGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPES 312 (510)
T ss_pred ccCCCCCCCeEEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCc
Confidence 5543210 1122332 335667777777666654432 223444555
No 22
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=2.4e-34 Score=271.24 Aligned_cols=196 Identities=43% Similarity=0.748 Sum_probs=156.5
Q ss_pred HHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHHHHhCCC
Q 014715 211 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTV 288 (420)
Q Consensus 211 ~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA~~lg~~ 288 (420)
+++|.+||++|+.++.|||++||||+||++|++++++... .++.+||++++ ..+|..+|+++|+++|++
T Consensus 1 r~~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~ 71 (269)
T cd01991 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP---------EPVKTFSIGFGFEGSDEREYARRVAEHLGTE 71 (269)
T ss_pred ChHHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC---------CCCceEEEeeCCCCCChHHHHHHHHHHhCCc
Confidence 3689999999999999999999999999999999988752 34788888775 356799999999999999
Q ss_pred ceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCCh-------
Q 014715 289 HHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK------- 361 (420)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~------- 361 (420)
|+.+.++.+++.+.+++.++..+.|. ..++..+++.+++.+++.|++|+|||+||||+|+||+++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~ 149 (269)
T cd01991 72 HHEVEFTPADLLAALPDVIWELDEPF--ADSSAIPLYLLSRLARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRL 149 (269)
T ss_pred ceEEEcCHHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHhCCEEEEecCCccccccChHHHHHHHHHhhccccC
Confidence 99999998888888888777766654 344567788999999999999999999999999999876532110
Q ss_pred -------------hHHhHHHHHHHHHhhhc--------------------ccchhhHHHhhcCcccccCcCCHHHHHHHH
Q 014715 362 -------------EEFHRETCHKIKALHQY--------------------DCLRANKSTSAWGLEARVPFLDKDFINVAM 408 (420)
Q Consensus 362 -------------~~~~~e~~~~~~~l~~~--------------------~l~r~dr~~~~~gie~r~PfLd~~lv~~a~ 408 (420)
..+.+.+...+..+... -+.+.|+++|++|+|+|+||||.+||+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~ 229 (269)
T cd01991 150 LGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFAL 229 (269)
T ss_pred cchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhcccccCCCCCHHHHHHHH
Confidence 01111122222222211 146789999999999999999999999999
Q ss_pred cCCcccccc
Q 014715 409 AIDPEWKMV 417 (420)
Q Consensus 409 ~lP~~~k~~ 417 (420)
+||+++|+.
T Consensus 230 ~lP~~~k~~ 238 (269)
T cd01991 230 SLPPELKIR 238 (269)
T ss_pred cCCHHHhcC
Confidence 999999864
No 23
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=1.3e-33 Score=282.48 Aligned_cols=180 Identities=26% Similarity=0.391 Sum_probs=156.0
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe---------------------------CCeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (420)
||||+|+++.+. ....+..|+.+|+|||||+.|++.. +++++||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (479)
T PLN02440 1 ECGVVGIFGDPE----ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYST 76 (479)
T ss_pred CceEEEEECCcc----HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccc
Confidence 999999997431 2456788999999999999999762 247899999999
Q ss_pred cCC--CCCCCCeee--cCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH--------hHHHhhhccC
Q 014715 54 IDP--ASGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY--------GENFVDMLDG 119 (420)
Q Consensus 54 ~~~--~~~~qP~~~--~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~--------g~~~~~~l~G 119 (420)
.|. ..+.||+.. ..++++++|||+|+|+.+|+++| .++.|++.||+|+|+++|.++ +.++++.++|
T Consensus 77 ~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G 156 (479)
T PLN02440 77 AGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKG 156 (479)
T ss_pred cCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 996 369999985 35789999999999999999999 678899999999999999765 5789999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccCCe
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (420)
+||+++||+ ++++++||++|+|||||+...++.++||||.++|... .+.|+.|+||+++.++.++
T Consensus 157 ~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g 222 (479)
T PLN02440 157 AYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDK 222 (479)
T ss_pred ceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCC
Confidence 999999997 6799999999999999986545679999999999875 5678999999998887654
No 24
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-32 Score=273.47 Aligned_cols=183 Identities=25% Similarity=0.384 Sum_probs=156.6
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC---------------------------CeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (420)
||||+|+++.+.. +....+..++.+|+|||||++|++..+ ++++||+|++|
T Consensus 14 mCGI~Gi~~~~~~--~~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT 91 (469)
T PRK05793 14 ECGVFGVFSKNNI--DVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYST 91 (469)
T ss_pred CCeEEEEEcCCCc--cHHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeeccc
Confidence 9999999986431 124556788999999999999997532 37889999999
Q ss_pred cCC--CCCCCCeeec--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh--------HHHhhhccC
Q 014715 54 IDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (420)
Q Consensus 54 ~~~--~~~~qP~~~~--~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g--------~~~~~~l~G 119 (420)
.|. ..+.||+... .++++++|||+|+|+.+|+++| .|+.|++.||+|++++++.+++ .+++++++|
T Consensus 92 ~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G 171 (469)
T PRK05793 92 TGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKG 171 (469)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Confidence 986 3589999863 6889999999999999999999 6788999999999999999875 368999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccCCeeE
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLK 188 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~ 188 (420)
+|++++++. ++++++||++|.|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++.+
T Consensus 172 ~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~~ 238 (469)
T PRK05793 172 SYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGIK 238 (469)
T ss_pred hceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCceE
Confidence 999999997 89999999999999999986 6789999999999754 356888999999988765543
No 25
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=100.00 E-value=5.2e-34 Score=266.47 Aligned_cols=200 Identities=35% Similarity=0.644 Sum_probs=153.2
Q ss_pred HHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCC--cHHHHHHHHHHhC
Q 014715 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLG 286 (420)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--d~~~A~~vA~~lg 286 (420)
+|+++|.+||++|+.++.++++.||||+||++|++++++.. +.++.+||+++++.+ |..+|+++|+++|
T Consensus 1 ~~r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~---------~~~~~~~t~~~~~~~~~e~~~a~~va~~~~ 71 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQG---------GPPIKTFTIGFEDDDYDEREYARKVARHLG 71 (255)
T ss_dssp HHHHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTC---------CSEEEEEEEECSSCC--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhh---------CCceeEEEEEcCCCcchhHHHHHHHhcccc
Confidence 58999999999999999999999999999999999999833 368999999999877 9999999999999
Q ss_pred CCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCCh----h
Q 014715 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK----E 362 (420)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~----~ 362 (420)
++|+.++++++++.+.+++.++..+.|.........+.+.+++.+++.|++++|||+||||+|+||+.+...... .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~ 151 (255)
T PF00733_consen 72 LEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLG 151 (255)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHH
T ss_pred cccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccccccchHhHHHHhhhhhhh
Confidence 999999999999988899988888877642234456677788888889999999999999999999776543221 1
Q ss_pred HHhHHHHHHH------------------------HHhhhcccchhhHHHhhcCcccccCcCCHHHHHHHHcCCcccccc
Q 014715 363 EFHRETCHKI------------------------KALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMV 417 (420)
Q Consensus 363 ~~~~e~~~~~------------------------~~l~~~~l~r~dr~~~~~gie~r~PfLd~~lv~~a~~lP~~~k~~ 417 (420)
.....+...+ .++..+.+.+.+++++.+|+|+|+||||.+||+|+++||.++|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~~ 230 (255)
T PF00733_consen 152 RLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRFD 230 (255)
T ss_dssp HHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCCE
T ss_pred hhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecCHHHHHHHHhCCHHHHcC
Confidence 1222222222 223334456788999999999999999999999999999999985
No 26
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=1.5e-32 Score=255.43 Aligned_cols=183 Identities=26% Similarity=0.407 Sum_probs=157.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC---------------------------CeEEEEeeeeec
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~~ 54 (420)
|||+|+++... ....+..|+..|+|||||+.|++..+ .+++||+|+++.
T Consensus 1 Cgi~g~~~~~~----~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~ 76 (252)
T cd00715 1 CGVFGIYGAED----AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTA 76 (252)
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccC
Confidence 99999998532 23457789999999999999997642 368999999999
Q ss_pred CCC--CCCCCeee--cCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHhH---------HHhhhccC
Q 014715 55 DPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE---------NFVDMLDG 119 (420)
Q Consensus 55 ~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~---------~~~~~l~G 119 (420)
+.. .+.||+.. .+++++++|||+|+|+.+|+++| .++.+.+.||+|++++++.+++. ++++.++|
T Consensus 77 g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G 156 (252)
T cd00715 77 GSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKG 156 (252)
T ss_pred CCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccC
Confidence 863 58999985 35789999999999999999998 56778899999999999999984 58999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccCCeeEEe
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW 190 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~ 190 (420)
+|+++++|+ ++++++||++|.+||||+...++.++||||.++|... .+.+++||||+++.++.++...+
T Consensus 157 ~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~~ 226 (252)
T cd00715 157 AYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESS 226 (252)
T ss_pred ceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEEE
Confidence 999999998 8999999999999999988633789999999999875 67889999999998876654443
No 27
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=8.9e-33 Score=287.99 Aligned_cols=180 Identities=29% Similarity=0.477 Sum_probs=158.7
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe---------------------------CCeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (420)
||||+|+++... ....+..|+.+|+|||||++|++.. +++++||+||++
T Consensus 1 MCGI~g~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at 76 (604)
T PRK00331 1 MCGIVGYVGQRN----AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWAT 76 (604)
T ss_pred CcEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCC
Confidence 999999997532 2356778999999999999999872 347899999999
Q ss_pred cCC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH---h-------HHHhhhccC
Q 014715 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---G-------ENFVDMLDG 119 (420)
Q Consensus 54 ~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~---g-------~~~~~~l~G 119 (420)
.|. ..+.||+.+..++++++|||+|||+++|+++| .|+.|.+.||+|+++++|.++ | ..++++++|
T Consensus 77 ~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G 156 (604)
T PRK00331 77 HGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEG 156 (604)
T ss_pred CCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccC
Confidence 996 35899999777899999999999999999999 588899999999999999887 5 568999999
Q ss_pred ceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccccccceeeCCCcEEEccCCeeE
Q 014715 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (420)
Q Consensus 120 ~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (420)
+|||++||..+ ++++++||+ +||||+.. ++.++||||.++|......++.|+||+++.++.++.+
T Consensus 157 ~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~~ 222 (604)
T PRK00331 157 AYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRRVIYLEDGEIAVLTRDGVE 222 (604)
T ss_pred eeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeEE
Confidence 99999999876 899999996 99999985 6789999999999998888999999999888655544
No 28
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=8.8e-33 Score=255.45 Aligned_cols=174 Identities=28% Similarity=0.377 Sum_probs=148.9
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCC-CCCceEEe------------------------------------CCe
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGP-DWSGLYQH------------------------------------GDF 44 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGp-d~~g~~~~------------------------------------~~~ 44 (420)
|||+|+++.++... ....+..|+.+|+|||| |++|++.. ..+
T Consensus 1 CGI~G~~~~~~~~~-~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~ 79 (249)
T cd01907 1 CGIFGIMSKDGEPF-VGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYH 79 (249)
T ss_pred CcEEEEEecCCccc-cHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEE
Confidence 99999998642111 24567889999999999 99999874 247
Q ss_pred EEEEeeeeecCC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH----HhH-----
Q 014715 45 YLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE----YGE----- 111 (420)
Q Consensus 45 ~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~----~g~----- 111 (420)
++||+|++|.+. ..++||+.. ++++++|||+|+|+.+|+++| .++.|.+.||+|++++++.+ +|.
T Consensus 80 ~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~ 157 (249)
T cd01907 80 WIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYY 157 (249)
T ss_pred EEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHH
Confidence 899999999885 348999986 479999999999999999999 67889999999999998864 232
Q ss_pred --------------------HHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc----
Q 014715 112 --------------------NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD---- 167 (420)
Q Consensus 112 --------------------~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~---- 167 (420)
.++++++|+||++++++ +.++++||++|.|||||+.. ++.++||||.++|...
T Consensus 158 ~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~ 234 (249)
T cd01907 158 KHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRD 234 (249)
T ss_pred HHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccc
Confidence 46799999999999998 77999999999999999986 6789999999999876
Q ss_pred cccceeeCCCcEEE
Q 014715 168 CEHFEAFPPGHLYS 181 (420)
Q Consensus 168 ~~~i~~l~pG~~~~ 181 (420)
.+.+..++||+++.
T Consensus 235 ~~~~~~l~pGe~v~ 248 (249)
T cd01907 235 NAKVWEPRPGEYVI 248 (249)
T ss_pred hheEecCCCCceEe
Confidence 47788999999875
No 29
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.5e-32 Score=276.66 Aligned_cols=181 Identities=25% Similarity=0.423 Sum_probs=151.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe---------------------------CCeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (420)
||||+|+++.+. ....+..|+.+|+|||||+.|++.. +++++||+|++|
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (501)
T PRK09246 1 MCGIVGIVGHSP----VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPT 76 (501)
T ss_pred CceEEEEEcCcC----HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCc
Confidence 999999997532 2355778999999999999999873 368999999999
Q ss_pred cCC--CCCCCCee-ecCCcEEEEEeeEEcChHHHHHHh-c--CCCccCCChHHHHHHHHHHHh-----------------
Q 014715 54 IDP--ASGDQPLY-NEDKKIVVTVNGEIYNHEALRERL-T--NHKFRTGSDCDVIAHLYEEYG----------------- 110 (420)
Q Consensus 54 ~~~--~~~~qP~~-~~~~~~~~~~nG~i~n~~~L~~~l-~--~~~~~~~~d~e~l~~~~~~~g----------------- 110 (420)
.|. ..+.||+. +..++++++|||+|+|+.+|+++| . +..|.+.||+|+|++++.++.
T Consensus 77 ~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai 156 (501)
T PRK09246 77 AGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAV 156 (501)
T ss_pred CCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHH
Confidence 996 36999997 344569999999999999999999 2 568899999999999998762
Q ss_pred HHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEec---CcEEEEeeCccccccc-cccceeeCCCcEEEccCCe
Q 014715 111 ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (420)
Q Consensus 111 ~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (420)
.+++++++|+|+++++.. .++++++||++|+|||||+... ++.++||||.++|... .+.|+.|+||+++.++.++
T Consensus 157 ~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 157 AAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG 235 (501)
T ss_pred HHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence 157899999999997743 2679999999999999999752 3479999999999875 4568899999999887544
No 30
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=100.00 E-value=1.6e-31 Score=265.49 Aligned_cols=182 Identities=26% Similarity=0.429 Sum_probs=156.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe---------------------------CCeEEEEeeeeec
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (420)
|||+|+++.... ....+..|+.+|+|||||++|++.. +++++||+|+++.
T Consensus 1 CGI~Gi~~~~~~---~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~ 77 (442)
T TIGR01134 1 CGVVGIYSQEED---AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTA 77 (442)
T ss_pred CEEEEEEcCCcc---HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCC
Confidence 999999985421 2456778999999999999999863 2478999999999
Q ss_pred CC--CCCCCCeee-cCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh----------HHHhhhccC
Q 014715 55 DP--ASGDQPLYN-EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG----------ENFVDMLDG 119 (420)
Q Consensus 55 ~~--~~~~qP~~~-~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g----------~~~~~~l~G 119 (420)
|. ..+.||+.. ..++++++|||+|+|+.+|+++| .+..|++.||+|+++++|.+++ .+++++++|
T Consensus 78 G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G 157 (442)
T TIGR01134 78 GSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRG 157 (442)
T ss_pred CCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCc
Confidence 96 358999984 34559999999999999999999 5788899999999999999876 478999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCcccccc-ccccceeeCCCcEEEccCCeeEE
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND-DCEHFEAFPPGHLYSSKSGGLKR 189 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~-~~~~i~~l~pG~~~~~~~~~~~~ 189 (420)
+|+++++|+ ++++++||++|.|||||+.. ++.++||||.++|.. ..+.++.|+||+++.++.++++.
T Consensus 158 ~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~ 225 (442)
T TIGR01134 158 AYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLES 225 (442)
T ss_pred cceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEE
Confidence 999999986 89999999999999999986 678999999999975 35778999999999887665443
No 31
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.98 E-value=1e-31 Score=280.13 Aligned_cols=179 Identities=30% Similarity=0.485 Sum_probs=157.2
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe---------------------------CCeEEEEeeeeec
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (420)
|||+|+++... ....+..|+.+|+|||||++|++.. +.+++||+||++.
T Consensus 1 CGI~g~~~~~~----~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (607)
T TIGR01135 1 CGIVGYIGQRD----AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATH 76 (607)
T ss_pred CeEEEEECCcc----HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCC
Confidence 99999997432 2356788999999999999999873 3468999999999
Q ss_pred CC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHhH----------HHhhhccCc
Q 014715 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (420)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~----------~~~~~l~G~ 120 (420)
|. ..+.||+...+++++++|||+|||+.+|+++| .|+.|.+.||+|+++++|.+++. +++++|+|+
T Consensus 77 g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (607)
T TIGR01135 77 GKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGA 156 (607)
T ss_pred CCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCc
Confidence 96 35899999877889999999999999999999 57889999999999999999885 689999999
Q ss_pred eEEEEEECCC-CEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccccccceeeCCCcEEEccCCeeE
Q 014715 121 FSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (420)
Q Consensus 121 fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (420)
|||+++|+.. ++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.++.+
T Consensus 157 ~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~~~ 221 (607)
T TIGR01135 157 YALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRRVIYLEDGDIAILTRDGVR 221 (607)
T ss_pred eEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCeeE
Confidence 9999999875 469999996 99999985 6789999999999988888999999999888655543
No 32
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.97 E-value=3.6e-31 Score=233.55 Aligned_cols=129 Identities=23% Similarity=0.387 Sum_probs=113.6
Q ss_pred CCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEE
Q 014715 60 DQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVAR 137 (420)
Q Consensus 60 ~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~r 137 (420)
.|++.+ +++++++||||||+.||+++| .++.|++.||+|+|+++|++||.+++++|+|+|||++||++ ++++++|
T Consensus 44 ~~~~~~--~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G~~~l~~L~G~FAfai~D~~-~~L~laR 120 (199)
T cd01909 44 VQVARS--ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLGLHAFRLAEGDFCFFIEDGN-GRLTLAT 120 (199)
T ss_pred eeEeeC--CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHhHHHHHHcCEEEEEEEEcCC-CEEEEEE
Confidence 455543 468999999999999999999 57788999999999999999999999999999999999999 9999999
Q ss_pred cCCCCccEEEEEecCcEEEEeeCccccccc------------------cccceeeCCCcEEEccCC-------eeEEeeC
Q 014715 138 DAIGITSLYIGWGLDGSIWISSELKGLNDD------------------CEHFEAFPPGHLYSSKSG-------GLKRWYN 192 (420)
Q Consensus 138 D~~G~~pLyy~~~~~~~~~faSe~~~l~~~------------------~~~i~~l~pG~~~~~~~~-------~~~~~~~ 192 (420)
|++|+|||||+.. +.++||||+|+|++. +++|++||||+++.++.. ..++||.
T Consensus 121 Dr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~~~~~yW~ 198 (199)
T cd01909 121 DHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTAESRRTWT 198 (199)
T ss_pred CCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceEEEEEeec
Confidence 9999999999874 789999999999643 578999999999865422 3578997
Q ss_pred C
Q 014715 193 P 193 (420)
Q Consensus 193 ~ 193 (420)
|
T Consensus 199 p 199 (199)
T cd01909 199 P 199 (199)
T ss_pred C
Confidence 5
No 33
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.97 E-value=1.6e-30 Score=237.79 Aligned_cols=178 Identities=38% Similarity=0.594 Sum_probs=154.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC---------------------------CeEEEEeeeeec
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~~ 54 (420)
|||+|+++.+............|+..++|||||+.|++... .++++|+|+++.
T Consensus 1 Cgi~g~~~~~~~~~~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~ 80 (220)
T cd00352 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATN 80 (220)
T ss_pred CEEEEEECCCCcchhhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeec
Confidence 99999998765443211111468899999999999998865 689999999999
Q ss_pred CC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh---------HHHhhhccCce
Q 014715 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDMLDGMF 121 (420)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g---------~~~~~~l~G~f 121 (420)
+. ..+.||+....++++++|||+|+|+.+|+++| .+..+.+.+|+|+++++|.+|+ .+++..++|.|
T Consensus 81 g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 160 (220)
T cd00352 81 GLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPF 160 (220)
T ss_pred CCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccE
Confidence 85 46999998766789999999999999999998 4567789999999999999999 89999999999
Q ss_pred EEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCcccccccc-ccceeeCCCcE
Q 014715 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHL 179 (420)
Q Consensus 122 a~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~ 179 (420)
+++++|+.+++++++||++|.+||||....++.++||||..++.... +.+.+++||++
T Consensus 161 ~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~ 219 (220)
T cd00352 161 AFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGEL 219 (220)
T ss_pred EEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCC
Confidence 99999998899999999999999999985367899999999998754 67899999986
No 34
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.97 E-value=5.7e-31 Score=275.12 Aligned_cols=183 Identities=28% Similarity=0.457 Sum_probs=157.2
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC----------------------------------CeEE
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------------DFYL 46 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------------~~~l 46 (420)
||||+|+++.++ ....+..++.+|+|||||++|++..+ ++++
T Consensus 24 MCGI~G~~~~~~----~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~i 99 (640)
T PTZ00295 24 CCGIVGYLGNED----ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGI 99 (640)
T ss_pred CCeEEEEEcCcc----hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEE
Confidence 999999997542 24557789999999999999998732 2489
Q ss_pred EEeeeeecCC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH---Hh-------HH
Q 014715 47 AHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YG-------EN 112 (420)
Q Consensus 47 ~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~---~g-------~~ 112 (420)
||+||+|.|. ..+.||+.+..++++++|||+|+|+.+|+++| .|+.|.+.+|+|+|++++.+ +| .+
T Consensus 100 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~ 179 (640)
T PTZ00295 100 AHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKS 179 (640)
T ss_pred EEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999996 45899998777899999999999999999999 68899999999999999863 33 36
Q ss_pred HhhhccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccccccceeeCCCcEEEccCCeeEEee
Q 014715 113 FVDMLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY 191 (420)
Q Consensus 113 ~~~~l~G~fa~v~~d~~-~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~ 191 (420)
++++++|+||++++|.. .++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.++++.|.
T Consensus 180 ~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 180 AISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred HHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEEeCCCeEEEEECCeEEEEe
Confidence 89999999999999976 4799999997 99999985 6789999999999988778888999999988776665543
No 35
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.96 E-value=5.1e-28 Score=230.40 Aligned_cols=239 Identities=24% Similarity=0.336 Sum_probs=179.9
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCC----------------------------eEEEEeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----------------------------FYLAHQRLA 52 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~----------------------------~~l~h~rl~ 52 (420)
||||+|+++.+..+ ....+..++.+|||||+++.|+.+.++ +++||+|++
T Consensus 4 ~CGV~Gi~~~~~~~--a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYs 81 (470)
T COG0034 4 MCGVFGIWGHKDNN--AAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYS 81 (470)
T ss_pred cceEEEEecCCccc--hHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeec
Confidence 99999999876522 356678899999999999999987653 378999999
Q ss_pred ecCCC--CCCCCeeec--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh---------HHHhhhc
Q 014715 53 IIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDML 117 (420)
Q Consensus 53 ~~~~~--~~~qP~~~~--~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g---------~~~~~~l 117 (420)
|.|.. .+.||+... .+.++++|||.|.|..+|+++| .|..|.+++|+|++++++.+.. ...++.+
T Consensus 82 TaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v 161 (470)
T COG0034 82 TAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRV 161 (470)
T ss_pred CCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhc
Confidence 99953 589999753 4579999999999999999999 7888999999999999997643 4678899
Q ss_pred cCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEE--ccCCeeE--EeeC
Q 014715 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYS--SKSGGLK--RWYN 192 (420)
Q Consensus 118 ~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~--~~~~~~~--~~~~ 192 (420)
.|.|++++..+ +.++.+|||.|+|||.++...+|.+++|||..+|... .+-++.++||+.+. ++..+++ ++..
T Consensus 162 ~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~~ 239 (470)
T COG0034 162 KGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVAE 239 (470)
T ss_pred CCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEecCceeEEEeccC
Confidence 99999999988 7999999999999999998645669999999999765 34578899999977 4433233 2222
Q ss_pred CCCC--------CCCCCCC---CCcHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHH
Q 014715 193 PTWY--------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITA 246 (420)
Q Consensus 193 ~~~~--------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~ 246 (420)
+... ....|++ ...+...|..+-+...+...-+.. ...|=.||+.-+|+--
T Consensus 240 ~~~~~~C~fEyVYFARPDS~Idg~sVy~~R~~mG~~La~e~~~eaD---vVipVPDSg~~aAig~ 301 (470)
T COG0034 240 PPRRAPCSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVEAD---VVIPVPDSGRPAAIGY 301 (470)
T ss_pred CCCCccceEEEEEeecCccccCCeeHHHHHHHHHHHHHHhCCcccc---EEEecCCCChHHHHHH
Confidence 2100 0122322 234556666666655554332221 3344489998877654
No 36
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.96 E-value=7.8e-29 Score=219.23 Aligned_cols=139 Identities=29% Similarity=0.559 Sum_probs=122.3
Q ss_pred CCCeeecCCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHH---h----HHHhhhccCceEEEEEECCCCE
Q 014715 60 DQPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNS 132 (420)
Q Consensus 60 ~qP~~~~~~~~~~~~nG~i~n~~~L~~~l~~~~~~~~~d~e~l~~~~~~~---g----~~~~~~l~G~fa~v~~d~~~~~ 132 (420)
.|-+.+.++++++++||||||+.+|+++|. . .++.+|+|+|+++|++| | .+++++|+|+|||++||+++++
T Consensus 63 ~~rl~~~~~~~~~vfnGeIyN~~eLr~~lg-~-~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~ 140 (224)
T cd01910 63 HPRLFAVKDDIFCLFQGHLDNLGSLKQQYG-L-SKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTST 140 (224)
T ss_pred cCcEECCCCCEEEEEEeEEcCHHHHHHHhC-C-CCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCE
Confidence 344556678899999999999999999983 2 36789999999999998 7 4799999999999999999999
Q ss_pred EEEEEcCCCCccEEEEEecCcEEEEeeCcccccccc-ccceeeCCCcEEEccCCeeEEeeCCCCCCCCCC
Q 014715 133 FIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (420)
Q Consensus 133 l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~ 201 (420)
++++||++|++||||++..+|.++||||+++|...| +.+..+||||++.. .+++.+|++|.|..+.+|
T Consensus 141 l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~~~~~~vp 209 (224)
T cd01910 141 VFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPMNKLKAVP 209 (224)
T ss_pred EEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCCchhhcCC
Confidence 999999999999999976678999999999999988 78999999999876 567899999988755444
No 37
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=1.4e-29 Score=210.02 Aligned_cols=119 Identities=44% Similarity=0.755 Sum_probs=74.9
Q ss_pred EeeeeecCCCCCCCCee-ecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH---HhHHHhhhccCce
Q 014715 48 HQRLAIIDPASGDQPLY-NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YGENFVDMLDGMF 121 (420)
Q Consensus 48 h~rl~~~~~~~~~qP~~-~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~---~g~~~~~~l~G~f 121 (420)
|+||++.+...+.||+. ++++++++++||+|||+++|+++| .++.+.+.+|+|+++++|++ ||.+++++++|+|
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~~~~~~~l~G~f 80 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWGEDFLKRLDGPF 80 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HGGGGGGT--EEE
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 89999987788999999 678899999999999999999999 46778899999999999987 9999999999999
Q ss_pred EEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCcccccc
Q 014715 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND 166 (420)
Q Consensus 122 a~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~ 166 (420)
|+++||+++++++++||++|+|||||++.+++.++||||+++|++
T Consensus 81 a~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 81 AFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 999999988899999999999999999973369999999999864
No 38
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.96 E-value=3e-28 Score=253.77 Aligned_cols=183 Identities=20% Similarity=0.322 Sum_probs=154.3
Q ss_pred CEEEEEEEcCCC--CchHHHHHHHHHHHhcccCCCCCCceEEe-----------------C-------------------
Q 014715 1 MCGILAVLGCSD--DSQAKRVRVLELSRRLKHRGPDWSGLYQH-----------------G------------------- 42 (420)
Q Consensus 1 McGI~G~~~~~~--~~~~~~~~~~~~~~~l~~RGpd~~g~~~~-----------------~------------------- 42 (420)
||||+|+++... ...+....+...+.+|+|||.|++|+... +
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 999999997531 00023456778899999999999999875 1
Q ss_pred -----------------CeEEEEeeeeecCC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHH
Q 014715 43 -----------------DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDV 101 (420)
Q Consensus 43 -----------------~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~ 101 (420)
++++||+||++.|. ..+.||+.+.+++++++|||+|||+.+|+++| .|+.|++.||||+
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEv 160 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEV 160 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHH
Confidence 15789999999996 45899999888899999999999999999999 7899999999999
Q ss_pred HHHH----HHHHhH--------HHhhhccCceEEEEEEC-CCCEEEEEEcCCCCccEEEEEecC----------------
Q 014715 102 IAHL----YEEYGE--------NFVDMLDGMFSFVLLDT-RDNSFIVARDAIGITSLYIGWGLD---------------- 152 (420)
Q Consensus 102 l~~~----~~~~g~--------~~~~~l~G~fa~v~~d~-~~~~l~~~rD~~G~~pLyy~~~~~---------------- 152 (420)
|+++ |.+||. +++++|+|+||+++... ..++++++||+ +||+++...+
T Consensus 161 i~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~ 237 (670)
T PTZ00394 161 ISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTD 237 (670)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccc
Confidence 9966 445563 78999999999999863 23899999999 9999998631
Q ss_pred ----cEEEEeeCccccccccccceeeCCCcEEEccCCe
Q 014715 153 ----GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGG 186 (420)
Q Consensus 153 ----~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~ 186 (420)
+.+++||++.+|....+.|..|++|++..+..+.
T Consensus 238 ~~~~~~~~~aSd~~a~~~~t~~~~~l~dg~~~~~~~~~ 275 (670)
T PTZ00394 238 LSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGA 275 (670)
T ss_pred cCCCCcEEEEeChHHHHHhhceEEEecCCeEEEEECCE
Confidence 4799999999999999999999999998776553
No 39
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.96 E-value=2.3e-28 Score=255.70 Aligned_cols=185 Identities=23% Similarity=0.412 Sum_probs=153.9
Q ss_pred CEEEEEEEcCCCC--chHHHHHHHHHHHhcccCCCCCCceEEeC------------------------------------
Q 014715 1 MCGILAVLGCSDD--SQAKRVRVLELSRRLKHRGPDWSGLYQHG------------------------------------ 42 (420)
Q Consensus 1 McGI~G~~~~~~~--~~~~~~~~~~~~~~l~~RGpd~~g~~~~~------------------------------------ 42 (420)
||||+|+++.... ..+....+...+.+|+|||+|++|++..+
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 9999999974310 11235667788999999999999998731
Q ss_pred ------CeEEEEeeeeecCC--CCCCCCeeec-CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHH----HH
Q 014715 43 ------DFYLAHQRLAIIDP--ASGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHL----YE 107 (420)
Q Consensus 43 ------~~~l~h~rl~~~~~--~~~~qP~~~~-~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~----~~ 107 (420)
++++||+||+|.|. ..+.||+... .+.++++|||+|+|+.+|+++| .|+.|++.+|+|+++++ |.
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~ 160 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFD 160 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHH
Confidence 26899999999996 3589999864 3789999999999999999999 78999999999999998 44
Q ss_pred HHhH------------HHhhhccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEec--C--------------------
Q 014715 108 EYGE------------NFVDMLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGL--D-------------------- 152 (420)
Q Consensus 108 ~~g~------------~~~~~l~G~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~--~-------------------- 152 (420)
+||. +++++|+|+||+++.++.. ++++++||+ +||+++... +
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (680)
T PLN02981 161 KLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDK 237 (680)
T ss_pred hcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCccccccccccccccccccccccc
Confidence 5543 4899999999999999553 899999997 999998752 1
Q ss_pred -cEEEEeeCccccccccccceeeCCCcEEEccCCeeE
Q 014715 153 -GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (420)
Q Consensus 153 -~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (420)
+.+++|||.++|....+.|+.|+||+++.++.++++
T Consensus 238 ~~~~~~aSe~~al~~~~~~~~~l~~gei~~i~~~~~~ 274 (680)
T PLN02981 238 PKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGVG 274 (680)
T ss_pred CCcEEEEeCHHHHHHhcCEEEEECCCeEEEEECCeEE
Confidence 369999999999999899999999999888765443
No 40
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.3e-26 Score=213.83 Aligned_cols=187 Identities=22% Similarity=0.376 Sum_probs=153.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC----------------------------CeEEEEeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (420)
||||+|++..+.-+. ...+....-+|||||+|+.|+.+.+ ++++||+|++
T Consensus 1 eCGv~Gi~~a~~~~~--l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYs 78 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASR--LPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYS 78 (474)
T ss_pred CCcEEEEEecCcccc--CcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecc
Confidence 999999998654421 2234444578999999999998765 4889999999
Q ss_pred ecCCC--CCCCCeeec--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH--------h-------H
Q 014715 53 IIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY--------G-------E 111 (420)
Q Consensus 53 ~~~~~--~~~qP~~~~--~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~--------g-------~ 111 (420)
|.|.. .+.|||... -|.++++|||++-|.++|++++ .++.+.|.||+|+|++++... + .
T Consensus 79 TaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~ 158 (474)
T KOG0572|consen 79 TAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIR 158 (474)
T ss_pred cccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHH
Confidence 99863 589999753 4679999999999999999999 788999999999999998542 1 4
Q ss_pred HHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCc----EEEEeeCccccccc-cccceeeCCCcEEEccCCe
Q 014715 112 NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDG----SIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (420)
Q Consensus 112 ~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~----~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (420)
++++.++|.|++++.-. ++++.+|||+|.|||..+...+. .+++|||..++... .+-.+++.||+++.++.++
T Consensus 159 ~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g 236 (474)
T KOG0572|consen 159 DVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNG 236 (474)
T ss_pred HHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecCC
Confidence 68899999999999988 78999999999999999874332 79999999999876 5667889999998887654
Q ss_pred eEEee
Q 014715 187 LKRWY 191 (420)
Q Consensus 187 ~~~~~ 191 (420)
.+..|
T Consensus 237 ~~s~~ 241 (474)
T KOG0572|consen 237 VKSVD 241 (474)
T ss_pred ceeee
Confidence 44333
No 41
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.94 E-value=2.6e-26 Score=192.17 Aligned_cols=127 Identities=36% Similarity=0.677 Sum_probs=114.4
Q ss_pred CCCCce--EEeCCeEEEEeeeeecCCC--CCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHH
Q 014715 33 PDWSGL--YQHGDFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLY 106 (420)
Q Consensus 33 pd~~g~--~~~~~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~ 106 (420)
||..++ +..+.+++||+|+++.|.. .++||+.+..++++++|||+|+|+.+|+++| .++.+++.+|+|+|++++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li 80 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALI 80 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHH
Confidence 555555 5566789999999999974 4569997677889999999999999999999 588899999999999999
Q ss_pred HHHhHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeC
Q 014715 107 EEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (420)
Q Consensus 107 ~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (420)
.++|.++++.++|+|++++++...++++++||++|.+||||... ++.++||||
T Consensus 81 ~~~g~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 81 HRWGEEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 99999999999999999999987799999999999999999986 789999997
No 42
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=8.9e-26 Score=224.99 Aligned_cols=178 Identities=28% Similarity=0.458 Sum_probs=154.6
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC---------------------------CeEEEEeeeee
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (420)
||||+|+++.+.. ....+.+.++.|.+||.|++|+...+ .+++||+||+|
T Consensus 1 MCGIvG~i~~~~~---~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWAT 77 (597)
T COG0449 1 MCGIVGYIGFLRE---AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWAT 77 (597)
T ss_pred CCcEEEEEcCCcc---HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccC
Confidence 9999999965433 34567888999999999999998763 47899999999
Q ss_pred cCCC--CCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh--------HHHhhhccCce
Q 014715 54 IDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDGMF 121 (420)
Q Consensus 54 ~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g--------~~~~~~l~G~f 121 (420)
.|.. .|+||..+ ++++|||||.|.|+.+|+++| .|+.|++++|||++.+++++.- ..++++|.|.|
T Consensus 78 HG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsy 155 (597)
T COG0449 78 HGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSY 155 (597)
T ss_pred CCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhccee
Confidence 9963 59999976 889999999999999999999 7999999999999999997642 46889999999
Q ss_pred EEEEEECCC-CEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccccccceeeCCCcEEEccCCee
Q 014715 122 SFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (420)
Q Consensus 122 a~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 187 (420)
|+++.|... ++++++|.- .||..+.. ++..++||++.+++...+.+..|..|.+..+..++.
T Consensus 156 al~~~~~~~p~~i~~ar~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v 218 (597)
T COG0449 156 ALLCTHSDFPDELVAARKG---SPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGV 218 (597)
T ss_pred EEEEEecCCCCeEEEEcCC---CCeEEEec-CCcceEecChhhhhhhhceEEEeCCCCEEEEECCcE
Confidence 999999877 789999986 89999986 778899999999999988888899998876655544
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.81 E-value=6.5e-19 Score=162.69 Aligned_cols=174 Identities=23% Similarity=0.250 Sum_probs=130.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCC------------CCCCceEEeC--------------------------
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRG------------PDWSGLYQHG-------------------------- 42 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RG------------pd~~g~~~~~-------------------------- 42 (420)
||+|+|+++.+.. ....+..-...|.+|+ +|+.|+....
T Consensus 1 MCr~~gy~g~~~~---l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~ 77 (251)
T TIGR03442 1 MCRHLAYLGAPVS---LADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLA 77 (251)
T ss_pred CceEeeecCCCee---HHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHH
Confidence 9999999985311 2233433344444443 3888876531
Q ss_pred -----CeEEEEeeeeecCC-C--CCCCCeeecCCcEEEEEeeEEcChH-----HHHHHh--cCC-CccCCChHHHHHHHH
Q 014715 43 -----DFYLAHQRLAIIDP-A--SGDQPLYNEDKKIVVTVNGEIYNHE-----ALRERL--TNH-KFRTGSDCDVIAHLY 106 (420)
Q Consensus 43 -----~~~l~h~rl~~~~~-~--~~~qP~~~~~~~~~~~~nG~i~n~~-----~L~~~l--~~~-~~~~~~d~e~l~~~~ 106 (420)
.++++|.|+++.|. . .+.|||.. ++++++|||.|.|++ +|+++| .++ .+.+.+|+|++++++
T Consensus 78 ~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li 155 (251)
T TIGR03442 78 RYVESGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALL 155 (251)
T ss_pred hhcccceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHH
Confidence 37889999999983 2 59999985 689999999999987 566666 342 678999999999888
Q ss_pred HHHhH------------HHhhhccCc-------eEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc
Q 014715 107 EEYGE------------NFVDMLDGM-------FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (420)
Q Consensus 107 ~~~g~------------~~~~~l~G~-------fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~ 167 (420)
.+... ++++.+.|. |++++.|+ ++++++||+. ||||... ++.++||||. |-..
T Consensus 156 ~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~ 227 (251)
T TIGR03442 156 LNRLLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD 227 (251)
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC
Confidence 76431 366667777 99999998 8999999986 9999975 5689999997 3322
Q ss_pred cccceeeCCCcEEEccCCeeE
Q 014715 168 CEHFEAFPPGHLYSSKSGGLK 188 (420)
Q Consensus 168 ~~~i~~l~pG~~~~~~~~~~~ 188 (420)
..++.++||+++.++.++++
T Consensus 228 -~~W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 228 -PGWQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred -CCceEeCCCeEEEEECCcEE
Confidence 37899999999998776543
No 44
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.76 E-value=1.2e-17 Score=160.40 Aligned_cols=182 Identities=23% Similarity=0.355 Sum_probs=134.4
Q ss_pred CEEEEEEEcCCCCc--hHHHHHHHHHHHhcccCCCCCCceEEeC-----------------------------------C
Q 014715 1 MCGILAVLGCSDDS--QAKRVRVLELSRRLKHRGPDWSGLYQHG-----------------------------------D 43 (420)
Q Consensus 1 McGI~G~~~~~~~~--~~~~~~~~~~~~~l~~RGpd~~g~~~~~-----------------------------------~ 43 (420)
||||||+.+.-... ....+.+...+++|.+||.|+.|+...+ .
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 99999999853322 1234556677889999999999998765 3
Q ss_pred eEEEEeeeeecCC--CCCCCCeeec-CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH----h----
Q 014715 44 FYLAHQRLAIIDP--ASGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY----G---- 110 (420)
Q Consensus 44 ~~l~h~rl~~~~~--~~~~qP~~~~-~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~----g---- 110 (420)
++++|+||+|.|. ..|.||..+. ...++++|||-|.|+++|+..| +|+.|++.+|||+++.++... +
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~ 160 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLD 160 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCccc
Confidence 7789999999995 3599999854 5789999999999999999999 799999999999999988642 2
Q ss_pred -----HHHhhhccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEe----------------------------------
Q 014715 111 -----ENFVDMLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWG---------------------------------- 150 (420)
Q Consensus 111 -----~~~~~~l~G~fa~v~~d~~-~~~l~~~rD~~G~~pLyy~~~---------------------------------- 150 (420)
...+.+++|+|++++-... -+++...|+- -||..+..
T Consensus 161 F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rrg---SPlliGvKs~~kls~d~~~V~y~~~~~~~~~~~~~~d~~~~~ 237 (670)
T KOG1268|consen 161 FHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKG---SPLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKASL 237 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccC---CcceeeecccccccccceeeeccccceecccccCCccccccc
Confidence 3468999999999873321 1677777764 23322210
Q ss_pred ---cCc--EEEEeeCccccccccccceeeCCCcEEEccCC
Q 014715 151 ---LDG--SIWISSELKGLNDDCEHFEAFPPGHLYSSKSG 185 (420)
Q Consensus 151 ---~~~--~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~ 185 (420)
.+. .++|||+..++..+.+.|.-|+-+.+..+.+|
T Consensus 238 ~~~~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG 277 (670)
T KOG1268|consen 238 HFLAGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDG 277 (670)
T ss_pred ccccCCceEEEEecCcchhheecceeEEeccCcEEEEecC
Confidence 011 57778887777776666666666665544444
No 45
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.73 E-value=5.5e-17 Score=151.43 Aligned_cols=133 Identities=24% Similarity=0.287 Sum_probs=110.9
Q ss_pred eEEEEeeeeecCC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cC-CCccCCChHHHHHHHHHHHh--------
Q 014715 44 FYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN-HKFRTGSDCDVIAHLYEEYG-------- 110 (420)
Q Consensus 44 ~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~-~~~~~~~d~e~l~~~~~~~g-------- 110 (420)
++++|+|+++.|. ..+.||+.. ++++++|||.|.|+.+|+..+ .+ ..+.+.+|+|++++++.+..
T Consensus 82 ~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~ 159 (257)
T cd01908 82 LVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDP 159 (257)
T ss_pred EEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcch
Confidence 7789999999995 358999986 479999999999999999988 34 56889999999999886532
Q ss_pred -------HHHhhhcc-----CceEEEEEECCCCEEEEEEcCCCCccEEEEEec-----------------CcEEEEeeCc
Q 014715 111 -------ENFVDMLD-----GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL-----------------DGSIWISSEL 161 (420)
Q Consensus 111 -------~~~~~~l~-----G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~-----------------~~~~~faSe~ 161 (420)
.+.+..+. |.|++++.|. ++++++||+. .+||||.... ++.++||||.
T Consensus 160 ~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE~ 236 (257)
T cd01908 160 AELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEP 236 (257)
T ss_pred HHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeCC
Confidence 23567777 7899999988 8899999998 8999998753 3689999998
Q ss_pred cccccccccceeeCCCcEEEccC
Q 014715 162 KGLNDDCEHFEAFPPGHLYSSKS 184 (420)
Q Consensus 162 ~~l~~~~~~i~~l~pG~~~~~~~ 184 (420)
-+... .++.++||+++.++.
T Consensus 237 l~~~~---~w~~v~~ge~~~i~~ 256 (257)
T cd01908 237 LTDDE---GWTEVPPGELVVVSE 256 (257)
T ss_pred CCCCC---CceEeCCCEEEEEeC
Confidence 77654 688999999988754
No 46
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.73 E-value=1.7e-16 Score=153.20 Aligned_cols=110 Identities=29% Similarity=0.414 Sum_probs=84.3
Q ss_pred CeEEEEeeeeecCCC--CCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccC----------------CChHHHH
Q 014715 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRT----------------GSDCDVI 102 (420)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~----------------~~d~e~l 102 (420)
.++++|+|++|.+.. .++||+. +++|||||.|...+++.+ .+..+.+ .||++++
T Consensus 196 ~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l 269 (361)
T PF00310_consen 196 HFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVL 269 (361)
T ss_dssp SEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHH
T ss_pred eEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHH
Confidence 488999999999865 3899997 799999999999999988 4555555 8999998
Q ss_pred HHHHHHH---h--------------------------------HHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEE
Q 014715 103 AHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (420)
Q Consensus 103 ~~~~~~~---g--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy 147 (420)
..+++.. | ..+++.++|.|++++.|. +.+++++|+.|.||+.|
T Consensus 270 ~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP~~~ 347 (361)
T PF00310_consen 270 DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRPLRY 347 (361)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S--EE
T ss_pred HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcceEE
Confidence 7777532 2 235778999999999988 67999999999999999
Q ss_pred EEecCcEEEEeeC
Q 014715 148 GWGLDGSIWISSE 160 (420)
Q Consensus 148 ~~~~~~~~~faSe 160 (420)
+...++.+++|||
T Consensus 348 ~~~~d~~~v~aSE 360 (361)
T PF00310_consen 348 GITEDGLVVLASE 360 (361)
T ss_dssp EEETTCEEEEESS
T ss_pred EEECCCEEEEEeC
Confidence 9876788999998
No 47
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.71 E-value=2.7e-16 Score=152.50 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=109.0
Q ss_pred CeEEEEeeeeecCCC--CCCCCeeecCCcEEEEEeeEEcChHHHHHHhc-------------------CCCccCCChHHH
Q 014715 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERLT-------------------NHKFRTGSDCDV 101 (420)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l~-------------------~~~~~~~~d~e~ 101 (420)
.++++|+|++|.+.. ..+||+. +++|||||+|...+++.+. .....+.||+++
T Consensus 202 ~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ 275 (413)
T cd00713 202 AFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSAS 275 (413)
T ss_pred EEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHH
Confidence 488999999999864 4789997 5999999999998888661 122346899999
Q ss_pred HHHHHHHH---h--------------------------------HHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEE
Q 014715 102 IAHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLY 146 (420)
Q Consensus 102 l~~~~~~~---g--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLy 146 (420)
+.++++-. | ..+++.++|+|++++.|. +.+.++||+.|.|||+
T Consensus 276 ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~ 353 (413)
T cd00713 276 LDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPAR 353 (413)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceE
Confidence 88887532 2 145688999999999998 8999999999999999
Q ss_pred EEEecCcEEEEeeCccccccccccce---eeCCCcEEEccCC
Q 014715 147 IGWGLDGSIWISSELKGLNDDCEHFE---AFPPGHLYSSKSG 185 (420)
Q Consensus 147 y~~~~~~~~~faSe~~~l~~~~~~i~---~l~pG~~~~~~~~ 185 (420)
|+..+++.+++|||..++....+.|. +|.||+++.++..
T Consensus 354 ~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~~ 395 (413)
T cd00713 354 YVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDLE 395 (413)
T ss_pred EEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEECC
Confidence 99775667999999999965555665 7999999877543
No 48
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.51 E-value=7.3e-14 Score=120.27 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=85.3
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--ecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~ 304 (420)
.+.+++|||+||+++++++.+... .++.++++ ++....+...++++|+. |++++.+.++..+..+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHH
Confidence 468999999999999999987642 25555555 34333456889999999 8887777776655443322
Q ss_pred HHHH-hhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhH
Q 014715 305 EVIY-HVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEE 363 (420)
Q Consensus 305 ~~~~-~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~ 363 (420)
..+. ..+.|. ..+.......+.+.|++.|++++++|+++||+|+||+.+...+..+.
T Consensus 73 ~~l~~~~~~p~--~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~Gy~~~~~~~~~~~ 130 (154)
T cd01996 73 ARFKAKVGDPC--WPCDTAIFTSLYKVALKFGIPLIITGENPAQEFGGIREEEGGIIDER 130 (154)
T ss_pred HHHhcccCCCC--hhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcccccccccchhHHH
Confidence 2211 122221 22223344567788889999999999999999999998876654443
No 49
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=99.50 E-value=1.2e-12 Score=113.84 Aligned_cols=131 Identities=31% Similarity=0.589 Sum_probs=109.8
Q ss_pred CcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHH---h----HHHhhhccCceEEEEEECCCCEEEEEEcCC
Q 014715 68 KKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNSFIVARDAI 140 (420)
Q Consensus 68 ~~~~~~~nG~i~n~~~L~~~l~~~~~~~~~d~e~l~~~~~~~---g----~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~ 140 (420)
.++.++|-|.|.|...|+++++ . -++.+++-++.++|+.. | .+.+..|+|.||||++|..+++++++||.-
T Consensus 75 DdIfCiF~G~L~Nl~~L~qqYG-L-sK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~ 152 (228)
T PF12481_consen 75 DDIFCIFLGSLENLCSLRQQYG-L-SKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSD 152 (228)
T ss_pred CCEEEEEecchhhHHHHHHHhC-c-CcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCC
Confidence 5689999999999999999982 2 26778899999999764 3 578999999999999999999999999999
Q ss_pred CCccEEEEEecCcEEEEeeCccccccccc-cceeeCCCcEEEccCCeeEEeeCCCCCCCCCC
Q 014715 141 GITSLYIGWGLDGSIWISSELKGLNDDCE-HFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (420)
Q Consensus 141 G~~pLyy~~~~~~~~~faSe~~~l~~~~~-~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~ 201 (420)
|..||||+...+|.++||++...|...|. .....|+|+++..+ ++++.|-.|...-+..|
T Consensus 153 G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~nk~k~~p 213 (228)
T PF12481_consen 153 GSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPKNKVKAMP 213 (228)
T ss_pred CCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCcccccccc
Confidence 99999999988899999999998877764 45679999998766 55777766655433333
No 50
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.43 E-value=1.7e-12 Score=125.88 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=86.1
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEE--eecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFC--VGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~ 303 (420)
-.+.|.+|||+||+++++++.+.. |.++.++| .++....+...++++++.+|++|+.+.++++.+.+..
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~~---------gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~ 130 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKKL---------GLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQ 130 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHh---------CCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHH
Confidence 348899999999999998886544 23444444 4454333556899999999999999998877765655
Q ss_pred HHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 304 EEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
...+.....|. ..+....+..+.+.|++.|++++++|+++||+||||..
T Consensus 131 ~~~~~~~~~pc--~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~fgGy~~ 179 (343)
T TIGR03573 131 RAYFKKVGDPE--WPQDHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSE 179 (343)
T ss_pred HHHHhccCCCc--hhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHhcCCccc
Confidence 55554333332 22223445677888999999999999999999999874
No 51
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.24 E-value=1.5e-10 Score=110.44 Aligned_cols=132 Identities=23% Similarity=0.230 Sum_probs=100.6
Q ss_pred eEEEEeeeeecCCC--CCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH---H-------
Q 014715 44 FYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---Y------- 109 (420)
Q Consensus 44 ~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~---~------- 109 (420)
++++|+|.+|.+.. ..+|||. .++|||||.++.-.++.+ .++.+++.+|+|.+..++-. .
T Consensus 204 ~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~~~ 277 (371)
T COG0067 204 IALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSASL 277 (371)
T ss_pred EEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcchhh
Confidence 77899999998754 3789997 469999999988888777 67888999999988877731 1
Q ss_pred ----------h--HHHhhhccCceEEEEEEC-CCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccccccceeeCC
Q 014715 110 ----------G--ENFVDMLDGMFSFVLLDT-RDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPP 176 (420)
Q Consensus 110 ----------g--~~~~~~l~G~fa~v~~d~-~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~p 176 (420)
| ..-...+.|.||++.-.. ..+...+.+|+.+.+|.+-+.. +..+.++|+..+++. +.-|.|
T Consensus 278 dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ld----rngLrp 352 (371)
T COG0067 278 DNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILD----RNGLRP 352 (371)
T ss_pred hHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeec----cCCCCc
Confidence 2 134567889999887541 1266788899999999988764 667888999888865 344788
Q ss_pred CcEEEccCCe
Q 014715 177 GHLYSSKSGG 186 (420)
Q Consensus 177 G~~~~~~~~~ 186 (420)
+.++..+.+.
T Consensus 353 ~Ry~~t~d~~ 362 (371)
T COG0067 353 ARYWITKDGE 362 (371)
T ss_pred ceEEEecCCE
Confidence 8887665554
No 52
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.17 E-value=1.6e-10 Score=103.19 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=82.0
Q ss_pred cccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCC--cHHHHHHHHHHhCCCceEEEechhhhHH
Q 014715 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDGID 301 (420)
Q Consensus 224 ~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--d~~~A~~vA~~lg~~~~~~~~~~~~~~~ 301 (420)
...++.+++|||+|||++|.++.+.+ |.++.++|+..+-.+ +.+.|+..|+.+|++|..+.++..+
T Consensus 16 ~~~kv~vAfSGGvDSslLa~la~~~l---------G~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~--- 83 (269)
T COG1606 16 EKKKVVVAFSGGVDSSLLAKLAKEAL---------GDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD--- 83 (269)
T ss_pred hcCeEEEEecCCccHHHHHHHHHHHh---------ccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc---
Confidence 33478999999999999999998887 468999999876543 6788999999999999998865322
Q ss_pred HHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 302 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
++..+. +.+.+.++-..-.-.+-+.|.+.|.++++.|-.+|++|++-|
T Consensus 84 --~~~~~n--~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RP 131 (269)
T COG1606 84 --PEFKEN--PENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRP 131 (269)
T ss_pred --hhhccC--CCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCc
Confidence 222221 111111111111224556788889999999999999998443
No 53
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.16 E-value=3.2e-10 Score=123.81 Aligned_cols=133 Identities=23% Similarity=0.222 Sum_probs=98.0
Q ss_pred CeEEEEeeeeecCCCC--CCCCeeecCCcEEEEEeeEEcChHHHHHHh------------------cCCCccCCChHHHH
Q 014715 43 DFYLAHQRLAIIDPAS--GDQPLYNEDKKIVVTVNGEIYNHEALRERL------------------TNHKFRTGSDCDVI 102 (420)
Q Consensus 43 ~~~l~h~rl~~~~~~~--~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l------------------~~~~~~~~~d~e~l 102 (420)
.+++.|+|.+|.+... .+|||. .++|||||.-..-.++.+ .+..-...||++.+
T Consensus 213 ~~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~l 286 (1485)
T PRK11750 213 AICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSL 286 (1485)
T ss_pred EEEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHH
Confidence 4789999999998654 689996 589999996433332221 11222457899886
Q ss_pred HHHHH---HHh--------------------------------HHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEE
Q 014715 103 AHLYE---EYG--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (420)
Q Consensus 103 ~~~~~---~~g--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy 147 (420)
-.+++ +.| ...++.++|+|++++.|. +.+++.|||.|.|||.|
T Consensus 287 Dn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~ 364 (1485)
T PRK11750 287 DNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARY 364 (1485)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeC--CEEEEecCCCCCccceE
Confidence 54443 333 125667899999999998 89999999999999977
Q ss_pred EEecCcEEEEeeCccccccccccc-e--eeCCCcEEEcc
Q 014715 148 GWGLDGSIWISSELKGLNDDCEHF-E--AFPPGHLYSSK 183 (420)
Q Consensus 148 ~~~~~~~~~faSe~~~l~~~~~~i-~--~l~pG~~~~~~ 183 (420)
....++.+++|||..++......+ + +|.||+++.++
T Consensus 365 ~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 365 VITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred EEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 776577899999999886543343 4 69999997764
No 54
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.16 E-value=3.1e-10 Score=105.61 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=81.2
Q ss_pred hcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC--CcHHHHHHHHHHhCCCceEEEechhh
Q 014715 221 RLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFTVQD 298 (420)
Q Consensus 221 rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~vA~~lg~~~~~~~~~~~~ 298 (420)
.+....++.+++|||+||+++++++.+.. .++.++++..+.. .|...|+++|+++|++|+.+.+++
T Consensus 8 ~l~~~~~vlVa~SGGvDSs~ll~la~~~g----------~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~-- 75 (252)
T TIGR00268 8 FLKEFKKVLIAYSGGVDSSLLAAVCSDAG----------TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDK-- 75 (252)
T ss_pred HHHhcCCEEEEecCcHHHHHHHHHHHHhC----------CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHH--
Confidence 33445679999999999999999998752 5788888876533 467889999999999999888742
Q ss_pred hHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 299 GIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
+.+.+ . ...+.....+....+..+.+.|++.|++++++|+.+|+++.+++
T Consensus 76 ~~~~~----~-~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rp 125 (252)
T TIGR00268 76 MINPF----R-ANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRP 125 (252)
T ss_pred HHHHH----H-hCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccH
Confidence 21111 1 11222111222223345667788999999999999999986543
No 55
>PRK14561 hypothetical protein; Provisional
Probab=99.11 E-value=6.3e-10 Score=99.18 Aligned_cols=107 Identities=22% Similarity=0.250 Sum_probs=75.2
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~ 306 (420)
+++++||||+||+++++++.+.. ...+.+++.++ .+|..+|+++|+.+|++|+.+.++.+. .+...+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~~---------~v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~~-~~~~~~~ 69 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY---------DVELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDREI-LEKAVDM 69 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC---------CeEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHH
Confidence 48999999999999999876541 12334444444 468899999999999999999887653 5556666
Q ss_pred HHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccc
Q 014715 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (420)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf 349 (420)
.+..+.|.. .+..+..+++...+ .|++++.+|.-.|.+.
T Consensus 70 ~~~~~~P~~--~~~~l~~~~l~~~a--~g~~~Ia~G~n~DD~~ 108 (194)
T PRK14561 70 IIEDGYPNN--AIQYVHEHALEALA--EEYDVIADGTRRDDRV 108 (194)
T ss_pred HHHcCCCCc--hhHHHHHHHHHHHH--cCCCEEEEEecCCCcc
Confidence 666655542 12223334444433 7899999999999853
No 56
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=99.07 E-value=9.5e-10 Score=102.99 Aligned_cols=178 Identities=20% Similarity=0.298 Sum_probs=73.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHH--HhcccCCCCCCceEEeC-----------------------------CeEEEEe
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELS--RRLKHRGPDWSGLYQHG-----------------------------DFYLAHQ 49 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~--~~l~~RGpd~~g~~~~~-----------------------------~~~l~h~ 49 (420)
||=++|+-...+... ...+.... .....+-||+.|+.... .++++|.
T Consensus 1 MC~Llg~s~~~p~~~--~~sl~~~~~~~~~~~~h~DGwGiawy~~~~~~~~k~~~pa~~~~~~~~l~~~~i~S~~~laHv 78 (271)
T PF13230_consen 1 MCRLLGMSSNRPTDI--NFSLTSFAARGGKTPPHPDGWGIAWYDGGGPRVFKSPRPAWNSPNLRLLADYKIRSRLFLAHV 78 (271)
T ss_dssp -------------------------------------EEEEEESSSS-EEEEESS-CCC-HHHHHHHH-H-EEEEEEEEE
T ss_pred Ccccccccccccccc--ccccccccccccCcCCCCCeeEEEEEeCCeEEEEECCCCCcCCchHHHHhhCCccCCEEEEEe
Confidence 999999976433221 11111111 11122348988887644 3678999
Q ss_pred eeeecCC--CCCCCCeeec--CCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHH----h-----------
Q 014715 50 RLAIIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY----G----------- 110 (420)
Q Consensus 50 rl~~~~~--~~~~qP~~~~--~~~~~~~~nG~i~n~~~L~~~l~~~~~~~~~d~e~l~~~~~~~----g----------- 110 (420)
|.++.|. ..+.|||..+ .++++++|||.|.+.+.+.... +...+.+|+|.++.++... +
T Consensus 79 R~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~--~~~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~ 156 (271)
T PF13230_consen 79 RAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR--YQPVGTTDSEHAFCLLLDQLRDRGPDAPPALEELF 156 (271)
T ss_dssp ------------SS-EE----ETTEEEEEEEEETTGGGGHHHH--HT--S--HHHHHHHHHHHTTTTT-HH--HHHHHHH
T ss_pred cccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc--cccCCCcHHHHHHHHHHHHHHHhCCcccccHHHHH
Confidence 9999885 3589999854 3679999999999887665332 2246789999998887542 1
Q ss_pred ---HHHhhhcc--CceEEEEEECCCCEEEEEEcC----CCCccEE-------------EE---EecCcEEEEeeCccccc
Q 014715 111 ---ENFVDMLD--GMFSFVLLDTRDNSFIVARDA----IGITSLY-------------IG---WGLDGSIWISSELKGLN 165 (420)
Q Consensus 111 ---~~~~~~l~--G~fa~v~~d~~~~~l~~~rD~----~G~~pLy-------------y~---~~~~~~~~faSe~~~l~ 165 (420)
.+..+.+. |.+.|++.|. +.+++.|+. .-+++.+ .. ...+..++||||.-.
T Consensus 157 ~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSePLt-- 232 (271)
T PF13230_consen 157 EALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEPLT-- 232 (271)
T ss_dssp HHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS-----
T ss_pred HHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEeccCC--
Confidence 12233333 6788999998 899999982 1122211 00 012457788888433
Q ss_pred cccccceeeCCCcEEEccCCee
Q 014715 166 DDCEHFEAFPPGHLYSSKSGGL 187 (420)
Q Consensus 166 ~~~~~i~~l~pG~~~~~~~~~~ 187 (420)
. -+....+|+|+++.+..|.+
T Consensus 233 ~-~e~W~~vp~g~~l~~~~G~v 253 (271)
T PF13230_consen 233 D-DEDWEPVPPGSLLVFRDGEV 253 (271)
T ss_dssp --SS--EE--SSEEEE------
T ss_pred C-CCCeEEcCCCcEEEEecccc
Confidence 2 23588999999999987764
No 57
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.05 E-value=1.6e-09 Score=100.71 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHh
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~l 285 (420)
+.+...|++.|+.. ....+.+.||||+||+++++++.+.... .++.++++.... ..|...|+++|+++
T Consensus 8 ~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~~~~--------~~v~~~~~~~~~~~~~~~~~a~~~a~~l 77 (248)
T cd00553 8 NALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRALGR--------ENVLALFMPSRYSSEETREDAKELAEAL 77 (248)
T ss_pred HHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHHhCc--------ccEEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 44445555555442 2356899999999999999999987631 468888887654 35788999999999
Q ss_pred CCCceEEEechhhhHHHHHHHHHhh--ccCCc---ccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 286 GTVHHEFHFTVQDGIDAIEEVIYHV--ETYDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 286 g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
|++|+++.+++ ..+.+...+... ..+.. ..++.-+-+..+...|.+.|..|+-||+ .+|++.||.
T Consensus 78 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G~~ 147 (248)
T cd00553 78 GIEHVNIDIDP--AVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLGYF 147 (248)
T ss_pred CCeEEEeccHH--HHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhCCe
Confidence 99999887643 233322222211 11111 1111223344567778888999999987 577788874
No 58
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.02 E-value=1.3e-09 Score=98.20 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=76.9
Q ss_pred eeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCCceEEEechhhhHHHHHH
Q 014715 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (420)
Q Consensus 228 v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~ 305 (420)
|.+++|||+||++++.++.+... .++.++++.... ..|.+.++++|+++|++|+.+.+++.. ...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---------~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~--- 67 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---------DRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPE--- 67 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---------CcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHH---
Confidence 46899999999999999987642 367888876543 357889999999999999998876321 111
Q ss_pred HHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 306 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
... ........+....+-.+.+.|++.|+.++++|+.+|+.+.+++
T Consensus 68 -~~~-~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~ 113 (202)
T cd01990 68 -FAK-NPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRP 113 (202)
T ss_pred -Hhc-CCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccCh
Confidence 111 1111111112222335667788899999999999999998754
No 59
>PRK13980 NAD synthetase; Provisional
Probab=99.02 E-value=1.4e-09 Score=101.93 Aligned_cols=133 Identities=23% Similarity=0.239 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHh
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~l 285 (420)
+++...+.+.|++. ....+.+.||||+||+++++++.+.+.. .++.++++.... ..|...|+++|+.+
T Consensus 15 ~~l~~~l~~~v~~~--g~~~vvv~lSGGiDSsv~a~l~~~~~~~--------~~v~av~~~~~~~~~~~~~~a~~la~~l 84 (265)
T PRK13980 15 EIIVDFIREEVEKA--GAKGVVLGLSGGIDSAVVAYLAVKALGK--------ENVLALLMPSSVSPPEDLEDAELVAEDL 84 (265)
T ss_pred HHHHHHHHHHHHHc--CCCcEEEECCCCHHHHHHHHHHHHHhCc--------cceEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 44555555555442 2357889999999999999999887531 468888887653 34788999999999
Q ss_pred CCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccccccc
Q 014715 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (420)
Q Consensus 286 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy 352 (420)
|++|+.+++++ ..+.+...+...+......++..+.+..+...|++.|..|+-||+..+.++|.+
T Consensus 85 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~sE~~~G~~ 149 (265)
T PRK13980 85 GIEYKVIEITP--IVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKSELLLGYF 149 (265)
T ss_pred CCCeEEEECHH--HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHhHHHhCCc
Confidence 99999887653 333332221100001001122233445667778888999999998866554433
No 60
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.99 E-value=1.3e-09 Score=101.46 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC---CCCcHHHHHHHH
Q 014715 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---GSPDLKYAKEVA 282 (420)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~---~~~d~~~A~~vA 282 (420)
..+++.+.|.++|+.+..+ .|.+.||||+||+++++++.+... .++.++.+... ...|...|+++|
T Consensus 5 ~~~~l~~~l~~~v~~~~~~--~V~vglSGGiDSsvla~l~~~~~~---------~~~~~~~~~~~~~~~~~e~~~a~~~a 73 (250)
T TIGR00552 5 YVEEIEDFLRGYVQKSGAK--GVVLGLSGGIDSAVVAALCVEALG---------EQNHALLLPHSVQTPEQDVQDALALA 73 (250)
T ss_pred HHHHHHHHHHHHHHHhCCC--CEEEECCCcHHHHHHHHHHHHhhC---------CceEEEEECCccCCCHHHHHHHHHHH
Confidence 4578899999999887544 566779999999999999887652 24444444322 224788999999
Q ss_pred HHhCCCceEEEechhhhHHHHHHHHHhh-ccCC---cccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-ETYD---VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
+.+|++|+.+.+++.. ..+....... +... ...++.-+.+..+...|.+.|+.++.||+..+ .+.||.
T Consensus 74 ~~lgi~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E-~~~G~~ 145 (250)
T TIGR00552 74 EPLGINYKNIDIAPIA--ASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSE-LMLGYF 145 (250)
T ss_pred HHhCCeEEEEcchHHH--HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHH-HhhCCe
Confidence 9999999988765432 1111100000 0000 00122224456777888899999999999965 566764
No 61
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.95 E-value=4.6e-09 Score=102.01 Aligned_cols=113 Identities=21% Similarity=0.194 Sum_probs=80.0
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC------------CCcHHHHHHHHHHhCCCceEEEe
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG------------SPDLKYAKEVADYLGTVHHEFHF 294 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~------------~~d~~~A~~vA~~lg~~~~~~~~ 294 (420)
+|++++|||+||++++.++.+. |.++.++++.... ..|...|+++|+.+|++|+.+++
T Consensus 2 kVlValSGGvDSsvla~lL~~~----------G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQ----------GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHc----------CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 5899999999999999998864 2578888886531 24678999999999999999988
Q ss_pred chhhhHHHHHHHH---HhhccCCcccccchhH-HHHHHHHHHhcCCEEEEeccCCcccc
Q 014715 295 TVQDGIDAIEEVI---YHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (420)
Q Consensus 295 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~l~~~a~~~g~~v~ltG~GgDelf 349 (420)
..+...+.+...+ ....+|++...++... +..+.+.|++.|++.+.||+.+|...
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 6543222222222 2233455444444322 34567888899999999999998753
No 62
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.6e-09 Score=98.71 Aligned_cols=114 Identities=19% Similarity=0.121 Sum_probs=82.1
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC---------CCcHHHHHHHHHHhCCCceEEEec
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---------SPDLKYAKEVADYLGTVHHEFHFT 295 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~---------~~d~~~A~~vA~~lg~~~~~~~~~ 295 (420)
..+|.+++|||+|||+.|+++.++. ..+..+++-.-. ..|...|+++|+.+|++|+.+++.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QG----------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~ 72 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQG----------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFE 72 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcC----------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchH
Confidence 3578999999999999999999874 678877763211 147789999999999999999986
Q ss_pred hhhh---HHHHHHHHHhhccCCcccccchhHH-HHHHHHHHhcCCEEEEeccCCccc
Q 014715 296 VQDG---IDAIEEVIYHVETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 296 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
.+-. .+.+.+-.....+|++...++-.-. -.+.+.|.+.|++.+.||+-+=.-
T Consensus 73 ~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~ 129 (356)
T COG0482 73 KEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQR 129 (356)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeee
Confidence 4322 2233333334567777666654333 356677888999999999986443
No 63
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.92 E-value=8.3e-09 Score=91.70 Aligned_cols=118 Identities=25% Similarity=0.348 Sum_probs=78.8
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeec--CCCCcHHHHHHHHHHhCCCceEEEechhh-h----
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGTVHHEFHFTVQD-G---- 299 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~d~~~A~~vA~~lg~~~~~~~~~~~~-~---- 299 (420)
+..++||||+||+++++.+.+.. ..+++.|+.+ ...-|.+.|+++|+.+|++|+++.++.-. +
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~----------~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~sa 73 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSA 73 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcC----------CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCc
Confidence 45689999999999999998764 5777777755 34568899999999999999988765311 1
Q ss_pred -HHH---HHHHHHhhccCCcc--cccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccc
Q 014715 300 -IDA---IEEVIYHVETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (420)
Q Consensus 300 -~~~---~~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~ 355 (420)
.+. +++.-...+....+ +.+|.+.+.+.+-.|...|++.+++|-.+.+ |.|||..
T Consensus 74 Ltd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D-~sgYPDc 134 (222)
T COG0603 74 LTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEED-FSGYPDC 134 (222)
T ss_pred CcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccc-cCCCCCC
Confidence 110 11100000100111 2245555556667788889999999999888 4678753
No 64
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.92 E-value=8e-09 Score=100.52 Aligned_cols=113 Identities=22% Similarity=0.182 Sum_probs=78.0
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC----------CCCcHHHHHHHHHHhCCCceEEEech
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE----------GSPDLKYAKEVADYLGTVHHEFHFTV 296 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~----------~~~d~~~A~~vA~~lg~~~~~~~~~~ 296 (420)
+|.+++|||+||+++++++.+.. .++.++++... ...|...|+++|+.+|++|+.++++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~g----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 47899999999999999998752 46777766432 12578899999999999999998865
Q ss_pred hhhHHHHHHHH---HhhccCCcccccchhH-HHHHHHHHHhcCCEEEEeccCCcccc
Q 014715 297 QDGIDAIEEVI---YHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (420)
Q Consensus 297 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~l~~~a~~~g~~v~ltG~GgDelf 349 (420)
+...+.+...+ ....+|++...++... +..+.+.|.+.|++.+.||+.+|...
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee
Confidence 43322222222 2223454433443322 33556778889999999999998765
No 65
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.92 E-value=1.2e-08 Score=91.92 Aligned_cols=156 Identities=21% Similarity=0.307 Sum_probs=81.3
Q ss_pred eeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeec--CCCCcHHHHHHHHHHhCC-CceEEEech-hhh----
Q 014715 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGT-VHHEFHFTV-QDG---- 299 (420)
Q Consensus 228 v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~d~~~A~~vA~~lg~-~~~~~~~~~-~~~---- 299 (420)
+.++||||+||+++++.+.+.. ..+.++++.+ ....|.+.|+++++++|+ +|+.++++. .++
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~----------~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~ 71 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEG----------YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSA 71 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH-----------SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcC----------CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCc
Confidence 4689999999999999888764 5677777655 434588999999999999 999988862 211
Q ss_pred -HHH---HHHHHHhhccCCcc--cccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhHHHHHHHH
Q 014715 300 -IDA---IEEVIYHVETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIK 373 (420)
Q Consensus 300 -~~~---~~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~e~~~~~~ 373 (420)
.+. +++.-...+..... +.+|.+.+-..+..|...|+..++.|.-+++ +.+|+... ..|.+.+ +
T Consensus 72 L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D-~~~ypDc~-----~~F~~~~----~ 141 (209)
T PF06508_consen 72 LTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAED-ASGYPDCR-----PEFIDAM----N 141 (209)
T ss_dssp HHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-S-TT--GGGS-----HHHHHHH----H
T ss_pred ccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCc-cCCCCCCh-----HHHHHHH----H
Confidence 111 11100000111111 1234443444556677889999999998877 57887532 2333322 2
Q ss_pred HhhhcccchhhHHHhhcCcccccCcCCH---HHHHHHHcCC
Q 014715 374 ALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAMAID 411 (420)
Q Consensus 374 ~l~~~~l~r~dr~~~~~gie~r~PfLd~---~lv~~a~~lP 411 (420)
.+.. ......+++..||++. ++++.+..+.
T Consensus 142 ~~~~--------~~~~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 142 RLLN--------LGEGGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp HHHH--------HHHTS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred HHHH--------hcCCCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 2221 1133468888899885 5666665543
No 66
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.91 E-value=7.2e-09 Score=94.31 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=94.9
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCC-ceEEEechhhhH--H
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTV-HHEFHFTVQDGI--D 301 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~-~~~~~~~~~~~~--~ 301 (420)
++.+++|||+||+++++++.+.. .++.++|+.+.. ..|.+.|+++|+++|++ |++++++.-..+ .
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~----------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s 72 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY----------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVS 72 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC----------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 57899999999999999886532 467888877654 35889999999999996 888776531100 0
Q ss_pred HHHHH---HH--hh--ccCCcccc--cchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhHHHHHHH
Q 014715 302 AIEEV---IY--HV--ETYDVTTI--RASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKI 372 (420)
Q Consensus 302 ~~~~~---~~--~~--~~~~~~~~--~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~e~~~~~ 372 (420)
.+.+. +. .. +.+....+ ++.+...+....|.+.|++.++.|-.+|+. ++|+.- +.+|.+.+..
T Consensus 73 ~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~-~~YpDc-----r~~Fi~A~~~-- 144 (231)
T PRK11106 73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDF-SGYPDC-----RDEFVKALNH-- 144 (231)
T ss_pred ccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcC-CCCCCC-----CHHHHHHHHH--
Confidence 01000 00 00 00111111 222222233346778999999999999885 788752 3334333222
Q ss_pred HHhhhcccchhhHHHhhcCcccccCcCCH---HHHHHHHcCC
Q 014715 373 KALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAMAID 411 (420)
Q Consensus 373 ~~l~~~~l~r~dr~~~~~gie~r~PfLd~---~lv~~a~~lP 411 (420)
+.. ..+..++.+.+||++. ++++.+..+-
T Consensus 145 --~~~--------~~~~~~i~I~aPl~~lsK~eI~~l~~~lg 176 (231)
T PRK11106 145 --AVS--------LGMAKDIRFETPLMWLNKAETWALADYYG 176 (231)
T ss_pred --HHH--------hccCCCcEEEecCCCCCHHHHHHHHHHcC
Confidence 211 1122358899999984 5666666543
No 67
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.91 E-value=1.2e-08 Score=97.41 Aligned_cols=83 Identities=25% Similarity=0.279 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHH
Q 014715 205 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVA 282 (420)
Q Consensus 205 ~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA 282 (420)
...+.+.+.|+++|++++.++ ++++.||||+||+++++++.+.+.. .++.++.+... ..+|...|+.+|
T Consensus 14 ~~~e~i~~~l~~~V~~~~~~~-~VvVgLSGGIDSSvvaaLa~~a~g~--------~~v~av~~~~~~s~~~e~~~A~~lA 84 (326)
T PRK00876 14 AEAERIRAAIREQVRGTLRRR-GVVLGLSGGIDSSVTAALCVRALGK--------ERVYGLLMPERDSSPESLRLGREVA 84 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CEEEEccCCHHHHHHHHHHHHhhCC--------CcEEEEEecCCCCChHHHHHHHHHH
Confidence 356789999999999988776 8999999999999999999876521 23444443322 235789999999
Q ss_pred HHhCCCceEEEech
Q 014715 283 DYLGTVHHEFHFTV 296 (420)
Q Consensus 283 ~~lg~~~~~~~~~~ 296 (420)
+++|++|+.+.+++
T Consensus 85 ~~LGi~~~~i~i~~ 98 (326)
T PRK00876 85 EHLGVEYVVEDITP 98 (326)
T ss_pred HHcCCCEEEEECch
Confidence 99999999988865
No 68
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.90 E-value=2.8e-09 Score=102.78 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=72.5
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC-----------CcHHHHHHHHHHhCCCceEEEec
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----------PDLKYAKEVADYLGTVHHEFHFT 295 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-----------~d~~~A~~vA~~lg~~~~~~~~~ 295 (420)
+|.+.+|||+|||+-|+++.+.. .++..+++..-+. .|...|+++|++||++|+.+++.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G----------~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQG----------YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-----------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhhc----------ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 58899999999999999998764 7888888765433 25788999999999999999986
Q ss_pred hh---hhHHHHHHHHHhhccCCcccccchhH-HHHHHHHHHh-cCCEEEEeccCCccccc
Q 014715 296 VQ---DGIDAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKS-LGVKMVISGEGSDEIFG 350 (420)
Q Consensus 296 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~a~~-~g~~v~ltG~GgDelf~ 350 (420)
.+ .+++.+-+......+|++...+|..- +-.+.+.|.+ .|++.+.||+.|--...
T Consensus 72 ~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~ 131 (356)
T PF03054_consen 72 EEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD 131 (356)
T ss_dssp HHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee
Confidence 53 23444444444556777655554322 2356778888 89999999999876655
No 69
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.90 E-value=6.6e-09 Score=100.89 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=77.6
Q ss_pred ccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC----CCcHHHHHHHHHHhCCCceEEEechh-
Q 014715 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----SPDLKYAKEVADYLGTVHHEFHFTVQ- 297 (420)
Q Consensus 223 ~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~----~~d~~~A~~vA~~lg~~~~~~~~~~~- 297 (420)
.++.+|.+++|||+||++++.++.+. |.++.++++.... ..|...|+++|+.+|++|+.++++..
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~----------G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f 72 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEA----------GYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVF 72 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHc----------CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHH
Confidence 45668999999999999999999875 3578888876432 23578899999999999998876532
Q ss_pred --hhHHHHHHHHHhhccCCcccccchhHH-HHHHHHHHhcCCEEEEeccCCc
Q 014715 298 --DGIDAIEEVIYHVETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSD 346 (420)
Q Consensus 298 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~a~~~g~~v~ltG~GgD 346 (420)
++.+.+.+......+|++...++.... -.+.+.|.+.|++.+.||+.+.
T Consensus 73 ~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 73 RKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 111221211112234443333333222 3566778889999999999985
No 70
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.88 E-value=1.1e-08 Score=90.73 Aligned_cols=117 Identities=19% Similarity=0.178 Sum_probs=76.1
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC----CCcHHHHHHHHHHhCCCceEEEechhhhHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----SPDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~----~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~ 302 (420)
+|.+.+|||.||++++.++.+.....+ .+.++.++++.... ..+..+++++|+.+|++++.+.++.. + ..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEE-Y-TD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhh-c-ch
Confidence 478999999999999999987653210 01367777776432 24678899999999999998877522 1 00
Q ss_pred HHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccccc
Q 014715 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (420)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~ 350 (420)
... ............+.......+.+.|++.|+.++++|+.+|++..
T Consensus 75 ~~~-~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~e 121 (185)
T cd01993 75 DIE-VKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAE 121 (185)
T ss_pred hhh-hhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHH
Confidence 000 00001111111222344566778888999999999999998753
No 71
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.79 E-value=3.1e-08 Score=96.49 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=75.3
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCC-CceEEEechhhhHHH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA 302 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~-~~~~~~~~~~~~~~~ 302 (420)
.++.+++|||+|||+++.++.+. |.++.++|+.... ..|...|+++|+.+|+ +|+.+++..+...+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~----------G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~v 72 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQER----------GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGF 72 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHc----------CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHH
Confidence 57899999999999999998764 3678999987654 4688999999999998 588888764432233
Q ss_pred HHHHH-----HhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccC
Q 014715 303 IEEVI-----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 344 (420)
Q Consensus 303 ~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G 344 (420)
+...+ +....|.++..+ .+..-.+.+.|++.|++.+.+|.-
T Consensus 73 i~p~i~aNa~y~G~yPl~~~nR-~~~~~~l~e~A~~~G~~~IA~G~t 118 (400)
T PRK04527 73 VKPLVWAGEGYQGQYPLLVSDR-YLIVDAALKRAEELGTRIIAHGCT 118 (400)
T ss_pred HHHHHhcchhhcCCCCCccccH-HHHHHHHHHHHHHCCCCEEEecCc
Confidence 32222 222344432211 122234667788999999999994
No 72
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.79 E-value=5.1e-08 Score=94.51 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=79.8
Q ss_pred cccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhh---hH
Q 014715 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQD---GI 300 (420)
Q Consensus 224 ~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~---~~ 300 (420)
...+|.+++|||+||++++.++.+. |.++.++++... ..|...|+++|+++|++|+.++++.+- ..
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~----------G~eV~av~~~~~-~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~ 72 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQ----------GYEIVGVTMRVW-GDEPQDARELAARMGIEHYVADERVPFKDTIV 72 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHc----------CCcEEEEEecCc-chhHHHHHHHHHHhCCCEEEEeChHHHHHHHH
Confidence 3457999999999999999988764 357888887543 345677999999999999998876421 22
Q ss_pred HHHHHHHHhhccCCcccccchhH-HHHHHHHHHhcCCEEEEeccCCcc
Q 014715 301 DAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
+.+.+......+|+++..++... +..+.+.|.+.|+..+.||+-++-
T Consensus 73 ~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 73 KNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred HHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 22222222334566555555433 335778888999999999999964
No 73
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.77 E-value=4.7e-08 Score=95.05 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=75.4
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeec-------C-----CCCcHHHHHHHHHHhCCCceEEEe
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL-------E-----GSPDLKYAKEVADYLGTVHHEFHF 294 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~-------~-----~~~d~~~A~~vA~~lg~~~~~~~~ 294 (420)
++.+++|||+||++++.++.+.. .++.++++.. . ...|.+.|+++|+.+|++|+.+++
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 57899999999999999998753 5788888732 1 113678899999999999999887
Q ss_pred chhh---hHHHHHHHHHhhccCCcccccchhH-HHHHHHHHHhc-CCEEEEeccCC
Q 014715 295 TVQD---GIDAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKSL-GVKMVISGEGS 345 (420)
Q Consensus 295 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~a~~~-g~~v~ltG~Gg 345 (420)
..+- +.+.+.+......+|++...++... +..+.+.|++. |+..+.||+.+
T Consensus 72 ~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 72 QKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 5432 2222222222234555544444433 34566778886 99999999999
No 74
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.76 E-value=7e-08 Score=86.82 Aligned_cols=152 Identities=21% Similarity=0.326 Sum_probs=93.6
Q ss_pred eEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCCceEEEechhhhHHHHHH-
Q 014715 229 GVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE- 305 (420)
Q Consensus 229 ~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~- 305 (420)
.++||||+||++++.++.+.. .++.++++.+.. ..|.+.|+++|+.+|++|+.++++.-. .+..
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~---~~~~~ 68 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEG----------YEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLK---QLGGS 68 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcC----------CcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhc---ccccc
Confidence 589999999999999887642 578888887653 347789999999999999988775311 1000
Q ss_pred HHHhhc-cCC----------cc--cccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhHHHHHHH
Q 014715 306 VIYHVE-TYD----------VT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKI 372 (420)
Q Consensus 306 ~~~~~~-~~~----------~~--~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~e~~~~~ 372 (420)
.+.... .+. .. ..++.+.+-.+...|.+.|+..+++|.-.|++ +.|+.- +..|.+ .+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~-~~~~d~-----~~~f~~----~~ 138 (201)
T TIGR00364 69 ALTDESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDF-SGYPDC-----RDEFVK----AF 138 (201)
T ss_pred cccCCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcC-CCCCCC-----cHHHHH----HH
Confidence 000000 000 00 01122222345677889999999999999985 666531 222322 22
Q ss_pred HHhhhcccchhhHHHhhcCcccccCcCC---HHHHHHHHcCC
Q 014715 373 KALHQYDCLRANKSTSAWGLEARVPFLD---KDFINVAMAID 411 (420)
Q Consensus 373 ~~l~~~~l~r~dr~~~~~gie~r~PfLd---~~lv~~a~~lP 411 (420)
+.+.. .....++.+..||++ .++++.+..+-
T Consensus 139 ~~~~~--------~~~~~~~~i~~Pl~~~~K~eI~~la~~~g 172 (201)
T TIGR00364 139 NHALN--------LGMLTPVKIRAPLMDLTKAEIVQLADELG 172 (201)
T ss_pred HHHHH--------hhcCCCeEEEECCcCCCHHHHHHHHHHcC
Confidence 22211 112345788999977 36777776544
No 75
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.76 E-value=4.8e-08 Score=95.52 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=76.7
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCC-ceEEEechhhhHH-HH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV-HHEFHFTVQDGID-AI 303 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~-~~~~~~~~~~~~~-~~ 303 (420)
.++.+++|||+||++++.++.+.+ |.++.++++......|.+.|+++|+.+|+. |+.+++. +++.+ .+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l---------G~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~-~ef~~~~i 72 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY---------GCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLR-EEFVRDYV 72 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh---------CCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCH-HHHHHHhH
Confidence 468999999999999999988753 357999999877667899999999999985 4444544 23322 22
Q ss_pred HHHH-----HhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCC
Q 014715 304 EEVI-----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (420)
Q Consensus 304 ~~~~-----~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~Gg 345 (420)
...+ +....|.++.++....+-.+.+.|++.|++++.+|.-+
T Consensus 73 ~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 73 FPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 2222 22334444444333333456677889999999999876
No 76
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.73 E-value=1.1e-07 Score=83.75 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=66.4
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCc----HHHHHHHHHHhCCCceEEEechhhhH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPD----LKYAKEVADYLGTVHHEFHFTVQDGI 300 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d----~~~A~~vA~~lg~~~~~~~~~~~~~~ 300 (420)
++.++||||+||++++.++.+. |.++.++++.... ..| ...+.+.++.++.+|+...++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----------g~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----------GIEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----------CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH-
Confidence 3679999999999999999875 2577788876543 221 3344445566787776544443321
Q ss_pred HHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcc
Q 014715 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
...+......+++....+.......+.+.|.+.|++++++|+.+|.
T Consensus 70 -~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 70 -VQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred -HHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCccc
Confidence 1112222222333222222233345667788899999999998766
No 77
>PTZ00323 NAD+ synthase; Provisional
Probab=98.69 E-value=2.2e-07 Score=87.51 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=79.4
Q ss_pred HHhhhhccc--ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC---CCCcHHHHHHHHHHhCCCce
Q 014715 216 NAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---GSPDLKYAKEVADYLGTVHH 290 (420)
Q Consensus 216 ~aV~~rl~~--~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~---~~~d~~~A~~vA~~lg~~~~ 290 (420)
+.++.++.. ...+.+.||||+||+++++++.+.+...+. ......++..+ ...+...|+.+|+.+|++|+
T Consensus 35 ~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~-----~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~ 109 (294)
T PTZ00323 35 AKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNS-----PIQKNVGLCQPIHSSAWALNRGRENIQACGATEV 109 (294)
T ss_pred HHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccC-----CceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 344444333 467889999999999999999987643110 11233333333 22577889999999999999
Q ss_pred EEEechhhhHHHHHHHHHhhccCCcc---------cccchhHHHHHHHHHHhcCCEEEEecc-CCccc-cccccc
Q 014715 291 EFHFTVQDGIDAIEEVIYHVETYDVT---------TIRASTPMFLMSRKIKSLGVKMVISGE-GSDEI-FGGYLY 354 (420)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~a~~~g~~v~ltG~-GgDel-f~Gy~~ 354 (420)
++++++ ..+.+.+.+......... -+++ ...|.+++.+.+.|...++.|- ..||. .-||.-
T Consensus 110 ~idi~~--l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~-~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~Gy~t 181 (294)
T PTZ00323 110 TVDQTE--IHTQLSSLVEKAVGIKGGAFARGQLRSYMRT-PVAFYVAQLLSQEGTPAVVMGTGNFDEDGYLGYFC 181 (294)
T ss_pred EEECcH--HHHHHHHHHhhhhcccchhhHHHhHHHHHHh-HHHHHHHHHHhhcCCCeEEECCCCchhhhHhchHh
Confidence 988864 333333322211000000 0111 2246677777777888888888 58885 357753
No 78
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.67 E-value=1.1e-07 Score=90.65 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=70.5
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHH-HHhCCCceEEEechhhhHHH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVA-DYLGTVHHEFHFTVQDGIDA 302 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA-~~lg~~~~~~~~~~~~~~~~ 302 (420)
.++.+++|||+||+++++++.+.. |.++.++++... ...|.+.+++.+ +++|++|+.++.+.. +...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~---------G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~-fl~~ 86 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI---------GDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKER-FLSA 86 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh---------CCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHH-HHhh
Confidence 679999999999999999998865 357888887653 235666666654 589999998876531 2222
Q ss_pred HHHHHHhhccCCc-ccccchhHHHHHHHHHHhcC-CEEEEeccCCccc
Q 014715 303 IEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (420)
Q Consensus 303 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~a~~~g-~~v~ltG~GgDel 348 (420)
+.. ...+.. ..++.......+.+.|++.| ++.+++|...|.+
T Consensus 87 l~~----v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 87 LKG----VTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred hcC----CCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 111 111110 00111112234566677888 9999999998754
No 79
>PRK00919 GMP synthase subunit B; Validated
Probab=98.65 E-value=2.1e-07 Score=88.29 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=77.3
Q ss_pred HHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCCceEEE
Q 014715 216 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFH 293 (420)
Q Consensus 216 ~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~~~~~~ 293 (420)
+.++..+.. .++.+++|||+||+++++++.+.. |.++.++++.... ..|.+.++++|+.+ ++|+.+.
T Consensus 13 ~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~l---------G~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd 81 (307)
T PRK00919 13 EEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAI---------GDRLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVD 81 (307)
T ss_pred HHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHh---------CCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEE
Confidence 445555554 689999999999999999998864 3578888886543 45888999999888 8888876
Q ss_pred echhhhHHHHHHHHHhhccCC-cccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 294 FTVQDGIDAIEEVIYHVETYD-VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
.+.. +.+.+.. ...+. ...++.......+.+.|++.|++.+++|...|.+
T Consensus 82 ~~e~-fl~~L~~----v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~ 132 (307)
T PRK00919 82 AKDR-FLDALKG----VTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDW 132 (307)
T ss_pred CCHH-HHHhccC----CCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 6431 2222211 11111 0011111122345567888899999999988765
No 80
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=98.64 E-value=3.4e-07 Score=85.54 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhhh--cccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC-CCcHHHHHHHHHH
Q 014715 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADY 284 (420)
Q Consensus 208 ~~l~~~l~~aV~~r--l~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~d~~~A~~vA~~ 284 (420)
+.+...+.+++++. +....++.+++|||.||++++.++.+.....+ .+.++.++++.... ..+.+.++++|+.
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----~~~~l~av~vd~g~~~~~~~~~~~~~~~ 85 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----INFELVAVNLDQKQPGFPEHVLPEYLES 85 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----CCeEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 45666777777663 34556899999999999999999877532110 01356777765432 2244578999999
Q ss_pred hCCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccc
Q 014715 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (420)
Q Consensus 285 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf 349 (420)
+|++++.+.++..... .+... ........+...-...+.+.|.+.|+.++++|+-+|...
T Consensus 86 lgI~~~v~~~~~~~~~---~~~~~--~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 86 LGVPYHIEEQDTYSIV---KEKIP--EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred hCCCEEEEEecchhhh---hhhhc--cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 9999988775432111 11010 011110111112234567788899999999999998643
No 81
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=98.61 E-value=6.1e-07 Score=75.50 Aligned_cols=118 Identities=19% Similarity=0.343 Sum_probs=78.7
Q ss_pred CCCeeecCCcEEEEEeeEEcChHHHHHHhcCC--CccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEE
Q 014715 60 DQPLYNEDKKIVVTVNGEIYNHEALRERLTNH--KFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVAR 137 (420)
Q Consensus 60 ~qP~~~~~~~~~~~~nG~i~n~~~L~~~l~~~--~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~r 137 (420)
-|-+.. .+...-.-|.|||+.-|+.....+ .-..-+|+|++..++.+.|..++.--+|+|+|.+=|+ ++++.+.+
T Consensus 41 ~qk~~~--~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG~~aLsLAEGdfcffiE~k-ng~L~l~T 117 (201)
T PF09147_consen 41 FQKMRF--ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLGNSALSLAEGDFCFFIEDK-NGELTLIT 117 (201)
T ss_dssp EEEEEE--TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH-GGGGGG--SSEEEEEEET-TSEEEEEE
T ss_pred eeEEEe--cCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhhhhhhhhhcCceEEEEecC-CCcEEEEe
Confidence 344444 345677789999998887655222 2234699999999999999999999999999999776 49999999
Q ss_pred cCCCCccEEEEEecCcEEEEeeCccccccc--------------------------cccceeeCCCcEEEc
Q 014715 138 DAIGITSLYIGWGLDGSIWISSELKGLNDD--------------------------CEHFEAFPPGHLYSS 182 (420)
Q Consensus 138 D~~G~~pLyy~~~~~~~~~faSe~~~l~~~--------------------------~~~i~~l~pG~~~~~ 182 (420)
|+-|..|+|.-+. +..++...+|-+-.. .+++.++.||++..+
T Consensus 118 ds~G~~pv~lV~~--~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na~RlkPGsin~l 186 (201)
T PF09147_consen 118 DSRGFNPVYLVQS--KFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNAQRLKPGSINVL 186 (201)
T ss_dssp -SSSSS-EEEEES--SSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTEEEE-SSEEEEE
T ss_pred cCCCCceEEEEec--CceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccceecCCCceEEE
Confidence 9999999998763 456777666644221 257889999998554
No 82
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.59 E-value=3.2e-07 Score=89.70 Aligned_cols=111 Identities=19% Similarity=0.148 Sum_probs=73.2
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCC-cceeEEeecCC-CCcHHHHHHHHHHhCCCceEEEechhhhH-HH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGT-QLHSFCVGLEG-SPDLKYAKEVADYLGTVHHEFHFTVQDGI-DA 302 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~-~~~~~t~~~~~-~~d~~~A~~vA~~lg~~~~~~~~~~~~~~-~~ 302 (420)
.+|.+++|||+||++++.++.+.. |. ++.++++.... ..|.+.++++|+.+|++++.+++.. ++. +.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~---------g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~e-ef~~~~ 72 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY---------GYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKE-EFAKDY 72 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc---------CCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHH-HHHHHH
Confidence 468999999999999999987653 23 78888887643 3578889999999999998877653 233 22
Q ss_pred HHHHHHhh----ccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCc
Q 014715 303 IEEVIYHV----ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (420)
Q Consensus 303 ~~~~~~~~----~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgD 346 (420)
+...+... ..|..+.++.....-.+.+.|++.|++++.+|.-++
T Consensus 73 i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 73 IFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 22223221 111111111111122456678889999999999653
No 83
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.59 E-value=2.5e-07 Score=85.27 Aligned_cols=134 Identities=22% Similarity=0.224 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC--CcHHHHHHHHHHh
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 285 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~vA~~l 285 (420)
+++.+-|++-+++. ....+.+.||||+||+++|+++.+.+.. .++.++.+....+ .+...|+.+|+.+
T Consensus 3 ~~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~Alg~--------~~v~~v~mp~~~~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKALGP--------DNVLAVIMPSGFSSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHHHGG--------GEEEEEEEESSTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHHhhh--------ccccccccccccCChHHHHHHHHHHHHh
Confidence 34455555555432 2356789999999999999999998732 3688888863333 3678899999999
Q ss_pred CCCceEEEechhhhHHHHHHHHHhhc-cCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 286 GTVHHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 286 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
|+++..+++++ ..+.+.+.+.... ......+..-+.+-.++..|...+.-|+=|| .-+|..-||..
T Consensus 73 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVlgT~-N~sE~~~Gy~T 139 (242)
T PF02540_consen 73 GIEYIVIDIDP--IFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNYLVLGTG-NKSELLLGYFT 139 (242)
T ss_dssp TSEEEEEESHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEBE---CHHHHHHTCSH
T ss_pred CCCeeccchHH--HHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccceEEecCC-cHHHhhcCccc
Confidence 99999988764 3333333222111 0000011112223334444555554444444 35777778753
No 84
>PRK08349 hypothetical protein; Validated
Probab=98.58 E-value=3e-07 Score=82.48 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=66.4
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHh----CCCce-EEEechhhh-H
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYL----GTVHH-EFHFTVQDG-I 300 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~l----g~~~~-~~~~~~~~~-~ 300 (420)
++.+++|||+||++.+.++.+. |.++.++++.. +..+...++++|+.+ |++|+ .+.++..+. .
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~----------g~~v~av~~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRR----------GVEVYPVHFRQ-DEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHc----------CCeEEEEEEeC-CHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 4578999999999999988764 36788888876 335566677777666 47764 233332221 1
Q ss_pred HHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
..+..+......+.....+..+....+.+.|.+.|++.++||+..|+.
T Consensus 71 ~~~~~~~~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~ 118 (198)
T PRK08349 71 PVFEKLRELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQV 118 (198)
T ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchH
Confidence 122221111111221111222333456677888999999999776553
No 85
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.55 E-value=3.1e-07 Score=81.74 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=71.1
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC----CcHHHHHHHHHHhCCCceEEEechhhhHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS----PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~----~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~ 302 (420)
++.+.+|||.||++++.++.+..... +.++.++++...-. .+.+.++++|+.+|++++.+.++..+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccc
Confidence 47899999999999999998754221 24677777754321 367889999999999999888754321100
Q ss_pred HHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
. ...+. ......-+..+.+.+++.|++++++|+-+|++
T Consensus 75 ~------~~~~~--~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~ 112 (189)
T TIGR02432 75 K------KKNLE--EAAREARYDFFEEIAKKHGADYILTAHHADDQ 112 (189)
T ss_pred c------CCCHH--HHHHHHHHHHHHHHHHHcCCCEEEEcCccHHH
Confidence 0 00000 00011223356677888999999999998875
No 86
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.54 E-value=6.4e-07 Score=87.67 Aligned_cols=108 Identities=18% Similarity=0.108 Sum_probs=69.7
Q ss_pred eeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcH-HHHHHHHHHhCCC-ceEEEechhhhHH-HHH
Q 014715 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDL-KYAKEVADYLGTV-HHEFHFTVQDGID-AIE 304 (420)
Q Consensus 228 v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~-~~A~~vA~~lg~~-~~~~~~~~~~~~~-~~~ 304 (420)
|.+++|||+||++++.++.+.. +.++.++++......+. +.|+++|+.+|++ |+.+++.. ++.+ .+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---------~~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~-ef~~~~i~ 70 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---------GYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLRE-EFVEDYIF 70 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---------CCeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHH-HHHHHhhH
Confidence 4689999999999999998764 24789999877654443 8899999999996 66665542 2332 222
Q ss_pred HHHHhhc-----cCCcccccchhHHHHHHHHHHhcCCEEEEeccCC
Q 014715 305 EVIYHVE-----TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (420)
Q Consensus 305 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~Gg 345 (420)
..+.... .+..+.++.....-.+.+.|++.|++++.+|.-+
T Consensus 71 ~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 71 PAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3332221 1111111212222345677889999999888765
No 87
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.53 E-value=6.2e-07 Score=87.91 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=71.3
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC-CcHHHHHHHHHHhCCCceEEEechhhhHHH-H
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGTVHHEFHFTVQDGIDA-I 303 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~-~ 303 (420)
.+|.+++|||+||++++.++.+.. |.++.++++..... .|...|+++|+.+|++|+.+.--.+++.+. +
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---------G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i 76 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---------GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYI 76 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---------CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhc
Confidence 478999999999999999987753 25789999877644 588999999999999875543222333322 1
Q ss_pred HHHHHhhccCC-----cccccchhHHHHHHHHHHhcCCEEEEeccCC
Q 014715 304 EEVIYHVETYD-----VTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (420)
Q Consensus 304 ~~~~~~~~~~~-----~~~~~~~~~~~~l~~~a~~~g~~v~ltG~Gg 345 (420)
...+.....+. ...+.-....-.+.+.|++.|++++.+|.-|
T Consensus 77 ~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tg 123 (404)
T PLN00200 77 FPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATG 123 (404)
T ss_pred CHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcC
Confidence 12222111111 1111111222345677889999999887765
No 88
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.50 E-value=4.1e-07 Score=86.03 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=71.3
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHHHHhCC-CceEEEechhhhHHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAI 303 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA~~lg~-~~~~~~~~~~~~~~~~ 303 (420)
++.+++|||+||+++++++.+.. |.++.++++... ...|.+.++++|+.+|. +|+.++.+. .+.+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---------G~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e-~fl~~l 70 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---------GDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASE-RFLSAL 70 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---------CCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcH-HHHHHh
Confidence 36789999999999999998865 356888887554 24588899999998886 888877642 122221
Q ss_pred HHHHHhhccCC-cccccchhHHHHHHHHHHhcC-CEEEEeccCCccc
Q 014715 304 EEVIYHVETYD-VTTIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (420)
Q Consensus 304 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~g-~~v~ltG~GgDel 348 (420)
.. ...|. -..++.......+.+.|++.| ++.+++|.-+|.+
T Consensus 71 ~~----v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~ 113 (295)
T cd01997 71 KG----VTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDV 113 (295)
T ss_pred cC----CCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccch
Confidence 10 10110 000111122234567788889 9999999998876
No 89
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.46 E-value=1.3e-06 Score=89.21 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHH-HHHHh
Q 014715 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKE-VADYL 285 (420)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~-vA~~l 285 (420)
.+.+...+.+++.+.. .++.+++|||+||+++++++.+.+ |.++.++++...- .+|...+++ +|+.+
T Consensus 200 ~~~~~~~~~l~~~v~~-~~vlva~SGGvDS~vll~ll~~~l---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~l 269 (511)
T PRK00074 200 NFIEEAIEEIREQVGD-KKVILGLSGGVDSSVAAVLLHKAI---------GDQLTCVFVDHGLLRKNEAEQVMEMFREHF 269 (511)
T ss_pred HHHHHHHHHHHHhcCC-CcEEEEeCCCccHHHHHHHHHHHh---------CCceEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3444444455555543 689999999999999999998875 3578888876432 346666665 77999
Q ss_pred CCCceEEEechhhhHHHHHHHHHhhccCC-cccccchhHHHHHHHHHHhc-CCEEEEeccCCccc
Q 014715 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYD-VTTIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 348 (420)
Q Consensus 286 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~-g~~v~ltG~GgDel 348 (420)
|++|+.++++.. +.+.+.. ...+. ...++.......+.+.|++. |++.+++|+-.|.+
T Consensus 270 gi~~~vvd~~~~-f~~~l~g----~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~ 329 (511)
T PRK00074 270 GLNLIHVDASDR-FLSALAG----VTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDV 329 (511)
T ss_pred CCcEEEEccHHH-HHHhccC----CCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchh
Confidence 999998876421 2222111 01110 00111112233556778888 99999999977765
No 90
>PRK13981 NAD synthetase; Provisional
Probab=98.45 E-value=1.2e-06 Score=90.73 Aligned_cols=136 Identities=20% Similarity=0.211 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhhhccc--ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC--CcHHHHHHHHH
Q 014715 208 LVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVAD 283 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~--~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~vA~ 283 (420)
+++.+.+...++.++.. ...+.+.||||+||+++++++.+.+.. .++.++++....+ .+...|+++|+
T Consensus 261 ~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--------~~v~~~~~p~~~~~~~~~~~a~~~a~ 332 (540)
T PRK13981 261 AEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--------ERVRAVMMPSRYTSEESLDDAAALAK 332 (540)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--------CcEEEEECCCCCCCHHHHHHHHHHHH
Confidence 44555555555555433 357889999999999999999887632 3688888875443 46788999999
Q ss_pred HhCCCceEEEechhhhHHHHHHHHHhh---ccCCcc--cccchhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 284 YLGTVHHEFHFTVQDGIDAIEEVIYHV---ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
.+|++|+++++++ ..+.+.+.+... +.++.. .+..-+.+..++..|...|.-|+=||+- .|+.-||..
T Consensus 333 ~lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~-sE~~~Gy~t 405 (540)
T PRK13981 333 NLGVRYDIIPIEP--AFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNK-SEMAVGYAT 405 (540)
T ss_pred HcCCeEEEEECHH--HHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCcc-CHHHcCCeE
Confidence 9999999988764 333333322211 111110 1112233445566677777767777755 566677743
No 91
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.45 E-value=1e-06 Score=70.17 Aligned_cols=77 Identities=29% Similarity=0.288 Sum_probs=58.7
Q ss_pred eeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHHHH
Q 014715 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVI 307 (420)
Q Consensus 228 v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~ 307 (420)
+.+.+|||.||++++.++.+.. .++.++++.....+|...+++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----------YQVIAVTVDHGISPRLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----------CCEEEEEEcCCCcccHHHHHHHHHH-----------------------
Confidence 4689999999999999998763 4677788766555577777777776
Q ss_pred HhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccc
Q 014715 308 YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGG 351 (420)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~G 351 (420)
.....+.+.+++.|++.+++|+..|.+...
T Consensus 48 --------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~ 77 (103)
T cd01986 48 --------------AREEAAKRIAKEKGAETIATGTRRDDVANR 77 (103)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCcchHHHH
Confidence 123355667788899999999999987543
No 92
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1.1e-06 Score=84.08 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=80.2
Q ss_pred HHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--ecCC--CCcHHHHHHHHHHh
Q 014715 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEG--SPDLKYAKEVADYL 285 (420)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~--~~d~~~A~~vA~~l 285 (420)
++..+.+++.....-+.++.|++|||.||++++.++.+.... .++.++++ ++.. ..+...++.+++.+
T Consensus 6 ~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~--------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 6 LERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR--------IEVEAVHVDHGLRGYSDQEAELVEKLCEKL 77 (298)
T ss_pred HHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccC--------ceEEEEEecCCCCCccchHHHHHHHHHHHh
Confidence 344444444432111568999999999999999999986521 25566665 4443 35678889999999
Q ss_pred CCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 286 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
|++++...++........+ .......+.......+.+.|.+.|+++++||+.+|..
T Consensus 78 ~~~~~v~~~~~~~~~~~~~-------~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~ 133 (298)
T COG0037 78 GIPLIVERVTDDLGRETLD-------GKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQ 133 (298)
T ss_pred CCceEEEEEEeeccccccC-------CCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHH
Confidence 9988877765432211110 0011111222344567888999999999999999875
No 93
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.43 E-value=1.6e-06 Score=80.38 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=77.1
Q ss_pred HHHHHHhhhhcc--cccceeEEecCCcchHHHHHHHHHHhcccccccccCCc--ceeEEeecCCCCcHHHHHHHHHHhCC
Q 014715 212 QAFENAVIKRLM--TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQ--LHSFCVGLEGSPDLKYAKEVADYLGT 287 (420)
Q Consensus 212 ~~l~~aV~~rl~--~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~d~~~A~~vA~~lg~ 287 (420)
+.+.+.++..+. ....+.+-||||+||+++++++.+.....+..+. ... +.++...+....+...|+.+|+.+|+
T Consensus 23 ~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~-~~~~~~~~l~mP~~~~~~~~da~~la~~lgi 101 (268)
T PRK00768 23 RRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETG-DDDYQFIAVRLPYGVQADEDDAQDALAFIQP 101 (268)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhccccc-CcceeEEEEECCCCCcCCHHHHHHHHHhcCC
Confidence 333344444433 2345778899999999999998887643210000 012 33444333334568889999999999
Q ss_pred -CceEEEechhhhHHHHHHHHHhhcc-CCc---ccccchhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 288 -VHHEFHFTVQDGIDAIEEVIYHVET-YDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
+|.++++++ ..+.+.+.+..... ... ..+.+-+.+-.++..|...|.-|+=||.- +|+.-||..
T Consensus 102 ~~~~~i~I~~--~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N~-sE~~~Gy~T 170 (268)
T PRK00768 102 DRVLTVNIKP--AVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDHA-AEAVTGFFT 170 (268)
T ss_pred CeeEEEECHH--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCcc-cHHHhCcee
Confidence 788887753 44444333321000 000 01112233344555666667666666654 667777753
No 94
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.9e-06 Score=79.21 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=79.7
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEee----cC-------CCCcHHHHHHHHHHhCCCceEEEe
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG----LE-------GSPDLKYAKEVADYLGTVHHEFHF 294 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~----~~-------~~~d~~~A~~vA~~lg~~~~~~~~ 294 (420)
.+|.|++|||+||++-|.|+++.. .++..+-+- .+ ...|...|++||++++++.+.+++
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g----------~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARG----------YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcC----------CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 468999999999999999998764 566655442 11 125889999999999999999999
Q ss_pred chhhhHHHHHHHHHh---hccCCcccccchhHHHH-HHHHHH-hcCCEEEEeccCCcccccccc
Q 014715 295 TVQDGIDAIEEVIYH---VETYDVTTIRASTPMFL-MSRKIK-SLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 295 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-l~~~a~-~~g~~v~ltG~GgDelf~Gy~ 353 (420)
..+.+.+-+...+.. ..+|++...++-.-.+- +.+.|. ..|.+.+.||+.|-.+++-+.
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED 139 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc
Confidence 877666655555432 23454433333211121 223332 357889999999988777654
No 95
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.41 E-value=1.2e-06 Score=86.78 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=71.6
Q ss_pred ccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEee---cCCCCcHHHHHHHHHHhC-----CCceEEEe
Q 014715 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLG-----TVHHEFHF 294 (420)
Q Consensus 223 ~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~---~~~~~d~~~A~~vA~~lg-----~~~~~~~~ 294 (420)
.+.+++.++||||+||++++.++.+. |.++.++++. +....+...++++|+.++ ++|+.+++
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k~----------G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~ 243 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMKR----------GVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPF 243 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHHC----------CCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 35677889999999999999998764 3567777763 223346677888888885 88888876
Q ss_pred chhhhHHHHHHHHHhhccCC-cccc-cchhHHHHHHHHHHhcCCEEEEeccCCcccc
Q 014715 295 TVQDGIDAIEEVIYHVETYD-VTTI-RASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (420)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf 349 (420)
++. ...+.+ . .+. ...+ .-...+-.+.+.|.+.|+.+++||+-.|++.
T Consensus 244 ~~~--~~~i~~---~--~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~ 293 (394)
T PRK01565 244 TEI--QEEIKK---K--VPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVA 293 (394)
T ss_pred HHH--HHHHhh---c--CCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEcccccccc
Confidence 542 122111 1 111 0011 1112223456677889999999999988774
No 96
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.39 E-value=8.9e-07 Score=78.44 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=68.9
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--C--CcHHHHHHHHHHhCCCceEEEechhhhHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--S--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~--~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~ 302 (420)
++.+++|||.||++++.++.+..... +.++.++++.... . .+...++++|+.+|++++.+......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 70 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAP---- 70 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecccc----
Confidence 36899999999999999998765321 1367888876542 2 46788999999999998876211000
Q ss_pred HHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
..........-.+-...+.+.|.+.|++.+++|+-+|++
T Consensus 71 -------~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 71 -------KPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 000000000011223356677888999999999998875
No 97
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.39 E-value=1.6e-06 Score=85.10 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=69.6
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC-CCcHHHHHHHHHHhCC-CceEEEechhhhHHH--
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-- 302 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~d~~~A~~vA~~lg~-~~~~~~~~~~~~~~~-- 302 (420)
++.+++|||+||++++.++.+. |.++.++++.... ..|.+.+++.|+.+|+ +|+.+++.. ++.+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----------g~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~-ef~~~~~ 69 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----------GYEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDARE-EFVKDYG 69 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----------CCEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHH-HHHHhhc
Confidence 4789999999999999988764 2578899887654 4578899999999997 687777643 33332
Q ss_pred HHHHHHhhccCCc-ccccchhHHH----HHHHHHHhcCCEEEEeccCC
Q 014715 303 IEEVIYHVETYDV-TTIRASTPMF----LMSRKIKSLGVKMVISGEGS 345 (420)
Q Consensus 303 ~~~~~~~~~~~~~-~~~~~~~~~~----~l~~~a~~~g~~v~ltG~Gg 345 (420)
++.+. ....+.. -.+..++... .+.+.|++.|++++.+|.-+
T Consensus 70 ~~~i~-~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 70 FAAIQ-ANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred hhhhc-CCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccC
Confidence 22221 1111110 0011112222 35667888999999999854
No 98
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.37 E-value=2.7e-06 Score=83.20 Aligned_cols=112 Identities=20% Similarity=0.228 Sum_probs=71.1
Q ss_pred ccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCce-----EEEechh
Q 014715 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHH-----EFHFTVQ 297 (420)
Q Consensus 223 ~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~-----~~~~~~~ 297 (420)
.+.+++.+++|||+||++.+.++.+.. .++.++++... ..+.+.++++|+.++..+. .+.++..
T Consensus 178 Gs~gkvlvllSGGiDSpVAa~ll~krG----------~~V~~v~f~~g-~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~ 246 (381)
T PRK08384 178 GTQGKVVALLSGGIDSPVAAFLMMKRG----------VEVIPVHIYMG-EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQ 246 (381)
T ss_pred CCCCcEEEEEeCChHHHHHHHHHHHcC----------CeEEEEEEEeC-HHHHHHHHHHHHHhcccccCCcceEEEEChH
Confidence 456789999999999999999998763 67887777433 3456778899999885422 2223222
Q ss_pred ---hhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 298 ---DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 298 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
++...+.+.. .+.+ .+.++....+..+.+.|++.|++.++||+..|.+
T Consensus 247 ~~~~v~~~i~~~~--~~~~-~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 247 ERERIIQKLKELK--KENY-TCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred HHHHHHHHHHHhc--cCCC-chHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 1222222211 1111 1122222333456677889999999999987775
No 99
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.34 E-value=4.8e-06 Score=74.12 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=61.1
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--------CCcHHHHHHHHHHhCCCceEEEechhh
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--------SPDLKYAKEVADYLGTVHHEFHFTVQD 298 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--------~~d~~~A~~vA~~lg~~~~~~~~~~~~ 298 (420)
++.+++|||.||++.+.++.+.. .++.++++..+. ..+.+.++++|+.+|++|+.+.++..
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~- 69 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGE- 69 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCC-
Confidence 36789999999999999888743 456665543221 12778999999999999998876431
Q ss_pred hHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcc
Q 014715 299 GIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
..+.. -.++...+.+++.|++++++|.-.++
T Consensus 70 ~e~~~------------------~~l~~~l~~~~~~g~~~vv~G~i~sd 100 (194)
T cd01994 70 EEDEV------------------EDLKELLRKLKEEGVDAVVFGAILSE 100 (194)
T ss_pred chHHH------------------HHHHHHHHHHHHcCCCEEEECccccH
Confidence 11111 01222222333338999999988766
No 100
>PLN02347 GMP synthetase
Probab=98.34 E-value=2.1e-06 Score=87.68 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=75.3
Q ss_pred HHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHH-HHHHHHhCCCceEE
Q 014715 216 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYA-KEVADYLGTVHHEF 292 (420)
Q Consensus 216 ~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A-~~vA~~lg~~~~~~ 292 (420)
+.++..+..+.++.++||||+||+++|+++.+.+ |.++.++++... ...|...+ +.+|+++|++|+.+
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~al---------G~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vv 290 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAI---------GDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCV 290 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHh---------CCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEE
Confidence 3444556667789999999999999999999865 357888888643 33466555 77999999999998
Q ss_pred EechhhhHHHHHHHHHhhccCCcccccchhH--HH-HHH-HHHHhcCC--EEEEeccCCccccc
Q 014715 293 HFTVQDGIDAIEEVIYHVETYDVTTIRASTP--MF-LMS-RKIKSLGV--KMVISGEGSDEIFG 350 (420)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~-~~a~~~g~--~v~ltG~GgDelf~ 350 (420)
++++ .+++.++.+. ++.+-.-+..... .+ .+. +.+.+.|. +.++.|.-.|.+.-
T Consensus 291 d~~e-~fl~~l~~~~---~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~e 350 (536)
T PLN02347 291 DASE-RFLSKLKGVT---DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIE 350 (536)
T ss_pred eCcH-HHHhhCCCCC---ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCccccccc
Confidence 8763 2333322211 1111001111111 11 122 22223344 88999998887763
No 101
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.32 E-value=2.3e-06 Score=84.10 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=69.8
Q ss_pred ccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC---CCcHHHHHHHHHHhC---CCceEEEech
Q 014715 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG---TVHHEFHFTV 296 (420)
Q Consensus 223 ~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~---~~d~~~A~~vA~~lg---~~~~~~~~~~ 296 (420)
.+.+++.+++|||+||++.+.++.+. |.++.++++.... ..+...++.+|+.++ .+.+.+.++.
T Consensus 170 g~~~kvlvllSGGiDS~vaa~ll~kr----------G~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~ 239 (371)
T TIGR00342 170 GTQGKVLALLSGGIDSPVAAFMMMKR----------GCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDF 239 (371)
T ss_pred CcCCeEEEEecCCchHHHHHHHHHHc----------CCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeC
Confidence 35567899999999999999999775 3578777776542 245678889999884 3223333333
Q ss_pred hhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 297 QDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
.+... +.............+..+.+..+.+.|.+.|++.++||+-.|++
T Consensus 240 ~~~~~---~i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 240 TDVQE---EIIHIIPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQV 288 (371)
T ss_pred HHHHH---HHHhcCCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhh
Confidence 33322 22211111111111111222345667788999999999998875
No 102
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.30 E-value=3.8e-06 Score=76.29 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=58.8
Q ss_pred EEecCCcchHHHHHHHHHHhcccccccccCCcce-eEEeecC-------CCCcHHHHHHHHHHhCCCceEEEechhhhHH
Q 014715 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLH-SFCVGLE-------GSPDLKYAKEVADYLGTVHHEFHFTVQDGID 301 (420)
Q Consensus 230 ~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~-~~t~~~~-------~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~ 301 (420)
+++|||+||++.+..+.+.. .++. .+++..+ ...+.+.++++|+.+|++|+.++++... .+
T Consensus 2 vl~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~-~~ 70 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG----------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK-EK 70 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC----------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC-hH
Confidence 68999999999998887743 4553 3444322 1247889999999999999988875210 00
Q ss_pred HHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcc
Q 014715 302 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
..+ .++...+.+++.|++.+++|.-.++
T Consensus 71 ~~~------------------~l~~~l~~~~~~g~~~vv~G~i~sd 98 (218)
T TIGR03679 71 EVE------------------DLKGALKELKREGVEGIVTGAIASR 98 (218)
T ss_pred HHH------------------HHHHHHHHHHHcCCCEEEECCcccH
Confidence 000 0223334444559999999987763
No 103
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=98.29 E-value=2.4e-06 Score=75.60 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=61.7
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeec--CCC--CcHHHHHHHHHHhCCCceEEEechhh-hHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGS--PDLKYAKEVADYLGTVHHEFHFTVQD-GID 301 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~--~d~~~A~~vA~~lg~~~~~~~~~~~~-~~~ 301 (420)
+|.+.+|||.||++++.++.+..... +.++.++++.. ... .|....+++++.+|++++...++... ...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~ 74 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDRKKGS 74 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHCCTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeeecccC
Confidence 47899999999999999998875432 24677777654 322 35678899999999999888765300 000
Q ss_pred HHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 302 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
..+... -..-.-.+.+.|.+.|+.++++|+-.|..
T Consensus 75 ~~e~~a------------R~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 75 NIEECA------------RELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp TCHHHH------------HHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred CHHHHH------------HHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 000000 01112356778889999999999998864
No 104
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=5.1e-06 Score=69.14 Aligned_cols=61 Identities=33% Similarity=0.360 Sum_probs=51.0
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechh
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQ 297 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~ 297 (420)
.+++++|||-|||+-|.++.+.. ..+...|+.|.--+..++|++.|+.+|.+|..+.++.+
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg----------yev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~ 62 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG----------YEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDRE 62 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC----------CCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHH
Confidence 47899999999999998888764 46666666666668899999999999999999988654
No 105
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.21 E-value=7.2e-06 Score=71.56 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=61.6
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCCceEEEechhhhHHHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~ 304 (420)
++.+++|||+||++++.++.+.. .++.++++.+.. ..|...++++++.+| ++..+...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--------- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPAR--------- 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCc---------
Confidence 46789999999999999887642 467888886532 346688999999999 33322110
Q ss_pred HHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 305 EVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
.....-.+.+.|.+.|++.+++|+-.|+.
T Consensus 61 ---------------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~ 89 (169)
T cd01995 61 ---------------NLIFLSIAAAYAEALGAEAIIIGVNAEDY 89 (169)
T ss_pred ---------------CHHHHHHHHHHHHHCCCCEEEEeeccCcc
Confidence 00111234566778899999999999885
No 106
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.17 E-value=1.3e-05 Score=84.88 Aligned_cols=142 Identities=16% Similarity=0.156 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhhhcc--cccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCC--cHHHHHHHHH
Q 014715 208 LVLRQAFENAVIKRLM--TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVAD 283 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~--~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--d~~~A~~vA~ 283 (420)
+++.+.+...+.++++ ....+.+.||||+||+++++++.+....-+.. ..++.++++....+. ....|+++|+
T Consensus 342 ~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~---~~~v~~v~mp~~~ss~~s~~~a~~la~ 418 (679)
T PRK02628 342 YEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGLP---RKNILAYTMPGFATTDRTKNNAVALMK 418 (679)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCC---cceEEEEECCCCCCCHHHHHHHHHHHH
Confidence 4455555555555554 24678899999999999999888874211000 046778877433333 4578999999
Q ss_pred HhCCCceEEEechhhhHHHHHHHHHhh-c---cC-Cc--ccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccc
Q 014715 284 YLGTVHHEFHFTVQDGIDAIEEVIYHV-E---TY-DV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (420)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~--~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~ 355 (420)
.+|++|+++.+.+ ..+...+.+... . .. +. ..+++-+.+..+...|.+.|.-|+-||+- .|+.-||..+
T Consensus 419 ~LGi~~~~i~I~~--~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn~-sE~~~Gy~T~ 494 (679)
T PRK02628 419 ALGVTAREIDIRP--AALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGDL-SELALGWCTY 494 (679)
T ss_pred HhCCeEEEEEcHH--HHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCch-hhHHhCceec
Confidence 9999999988743 333222222111 0 00 10 01233344567778888999999999954 5666676543
No 107
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.17 E-value=1e-05 Score=82.41 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=69.8
Q ss_pred ccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC----CcHHHHHHHHHHhCCCce--EEEech
Q 014715 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS----PDLKYAKEVADYLGTVHH--EFHFTV 296 (420)
Q Consensus 223 ~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~----~d~~~A~~vA~~lg~~~~--~~~~~~ 296 (420)
.+.+++.++||||+||++.+.++.+.. .++.++++.+... .+.+.++.+++.++..|. .+.++.
T Consensus 175 g~~gk~lvllSGGiDS~va~~~~~krG----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~ 244 (482)
T PRK01269 175 GTQEDVLSLISGGFDSGVASYMLMRRG----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDF 244 (482)
T ss_pred cccCeEEEEEcCCchHHHHHHHHHHcC----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEec
Confidence 355678899999999999999887753 5788888765433 256788899988886554 444433
Q ss_pred hhhHHHHHHHHHhhccCCccc-ccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 297 QDGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
.+... ++..... ..... +.--..+..+.+.|.+.|++.++||+..|++
T Consensus 245 ~~~~~---~i~~~~~-~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dv 293 (482)
T PRK01269 245 EPVVG---EILEKVD-DGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQV 293 (482)
T ss_pred HHHHH---HHHhcCC-CceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhh
Confidence 22222 2222111 11111 1111111123567788999999999998875
No 108
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.14 E-value=7.6e-06 Score=71.09 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=68.4
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHHHHhCCCceEEEechhhhHHHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~ 304 (420)
++.+.+|||.||++++.++.+..... .++..+++... .....++++++++.+|++++.+......... ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 72 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEG-LA 72 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHH-HH
Confidence 46899999999999999998865310 15666665433 2234678999999999998887654322111 00
Q ss_pred HHHHhhccCCcccccc---hhHHHHHHHHHHhcCCEEEEeccCCccccc
Q 014715 305 EVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (420)
Q Consensus 305 ~~~~~~~~~~~~~~~~---~~~~~~l~~~a~~~g~~v~ltG~GgDelf~ 350 (420)
........+.. ..+. ..-.-.+.+.+++.+..++++|.-+||...
T Consensus 73 ~~~~~~~~~~~-~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~ 120 (173)
T cd01713 73 LGLKGFPLPSP-DRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120 (173)
T ss_pred HhhhccCCccc-cHHHhhccccchHHHHHHHhcCCeEEEEEeccccchh
Confidence 11110001110 0000 000123445566678999999999999744
No 109
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.05 E-value=4.4e-05 Score=72.50 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=68.7
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC-CCc-HHHHHHHHHHhCCCceEEEechhhhHHHH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~d-~~~A~~vA~~lg~~~~~~~~~~~~~~~~~ 303 (420)
.++.+++|||.||++++.++.+.+... +.++..+++...- .+| .+++.++|+.+|++++.+... +..
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~------~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~--~~i--- 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG------KLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP--EGI--- 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc------CCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh--HHH---
Confidence 467899999999999999998876421 1356666665332 233 578999999999998776432 111
Q ss_pred HHHHHhhccCCcc--cccchhHHHHHHHHHHhcCCEEEEeccCCcc
Q 014715 304 EEVIYHVETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 304 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
......+... ..+...-...+.+.+++.|++++++|.-.||
T Consensus 97 ---~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 97 ---ARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred ---hcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 1111111100 0111112234566777889999999999998
No 110
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.05 E-value=1.7e-05 Score=70.23 Aligned_cols=110 Identities=18% Similarity=0.294 Sum_probs=54.1
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEee---cCCCCcHHHHHHHHHHhCC-----CceEEEech
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLGT-----VHHEFHFTV 296 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~---~~~~~d~~~A~~vA~~lg~-----~~~~~~~~~ 296 (420)
.+++-++||||+||.+-+.++.+. |-.+..+++. +.+......++++++.+.. +...+.++.
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~kr----------G~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKR----------GCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCB----------T-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred CceEEEEecCCccHHHHHHHHHHC----------CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 456789999999999988888765 3677777764 2233345556666666532 222333332
Q ss_pred hhhHHHHHHHHHhhccCCcccccchhHHHHH-HHHHHhcCCEEEEeccCCccc
Q 014715 297 QDGIDAIEEVIYHVETYDVTTIRASTPMFLM-SRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~a~~~g~~v~ltG~GgDel 348 (420)
.+.. .++......... .+..-..|+.. .+.|.+.|++.++||+--.++
T Consensus 73 ~~~~---~~i~~~~~~~~~-ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 73 TEVQ---KEILRGVKERNP-CIDCKRFMYRIAEEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp HHHH---HHHHHHS-GGGH-HHHHHHHHHHHHHHHHHHTT--EEE----SSST
T ss_pred HHHH---HHHHhcCCccch-hHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHH
Confidence 2322 233222211111 11111223333 345678999999999876555
No 111
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.99 E-value=3.4e-05 Score=75.08 Aligned_cols=110 Identities=23% Similarity=0.241 Sum_probs=66.8
Q ss_pred EEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC-CcHHHHHHHHHHhCC-CceEEEechhhhHHHHHHHH
Q 014715 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGT-VHHEFHFTVQDGIDAIEEVI 307 (420)
Q Consensus 230 ~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~d~~~A~~vA~~lg~-~~~~~~~~~~~~~~~~~~~~ 307 (420)
+++|||||||+++..+.+.. +.++++|++..... .|...+++-|..+|. +++.++...+-..+.+...+
T Consensus 2 LAySGGLDTS~~l~~L~e~~---------~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI 72 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEG---------GYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAI 72 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTT---------TEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHH
T ss_pred eeeCCChHHHHHHHHHHhhc---------CceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHH
Confidence 68999999999998888764 25899999987655 688899999999998 88888875433224444444
Q ss_pred HhhccCCcc-cccchhHHH----HHHHHHHhcCCEEEEe---ccCCccc
Q 014715 308 YHVETYDVT-TIRASTPMF----LMSRKIKSLGVKMVIS---GEGSDEI 348 (420)
Q Consensus 308 ~~~~~~~~~-~~~~~~~~~----~l~~~a~~~g~~v~lt---G~GgDel 348 (420)
.....+... .+..++... .+.+.|++.|++++.- |-|-|++
T Consensus 73 ~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv 121 (388)
T PF00764_consen 73 KANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV 121 (388)
T ss_dssp HTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH
T ss_pred HHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh
Confidence 432222110 111222222 3456678889999864 5566665
No 112
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.94 E-value=0.00038 Score=64.15 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=34.3
Q ss_pred CeEEEEeeeeecCC--CCCCCCeeec--CCcEEEEEeeEEcChHHH
Q 014715 43 DFYLAHQRLAIIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEAL 84 (420)
Q Consensus 43 ~~~l~h~rl~~~~~--~~~~qP~~~~--~~~~~~~~nG~i~n~~~L 84 (420)
...++|.|.|+.|. ..+.||+..+ ...+.++|||.|.++..+
T Consensus 71 ~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 71 ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred cEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 37789999999985 3589999864 345799999999998874
No 113
>PRK05370 argininosuccinate synthase; Validated
Probab=97.91 E-value=0.00014 Score=71.39 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=77.9
Q ss_pred hcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCC-CceEEEechh
Q 014715 221 RLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQ 297 (420)
Q Consensus 221 rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~-~~~~~~~~~~ 297 (420)
.+....+|+++.|||+|||+++..+.+. +..++||++.... ..|.+.+++-|..+|. ++..++...+
T Consensus 7 ~l~~~~KVvLAYSGGLDTSv~l~wL~e~----------~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~e 76 (447)
T PRK05370 7 HLPVGQRVGIAFSGGLDTSAALLWMRQK----------GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQ 76 (447)
T ss_pred hCCCCCEEEEEecCCchHHHHHHHHHhc----------CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHH
Confidence 3555678999999999999999887764 2579999987654 5688899999999999 5777776543
Q ss_pred hhHHHHHHHHHhhcc--------CCc-ccccchhHHHHHHHHHHhcCCEEEE---eccCCccc
Q 014715 298 DGIDAIEEVIYHVET--------YDV-TTIRASTPMFLMSRKIKSLGVKMVI---SGEGSDEI 348 (420)
Q Consensus 298 ~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~l~~~a~~~g~~v~l---tG~GgDel 348 (420)
-..+.+ ..+..... +.. ..+...+..-.+.+.|++.|++++. ||-|-|++
T Consensus 77 F~e~~i-~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 77 LVAEGI-AAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHHHH-HHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH
Confidence 333444 44543221 111 1111111223456778899999986 55677775
No 114
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.88 E-value=9e-05 Score=74.44 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=53.6
Q ss_pred HhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--C-CC-cHHHHHHHHHHhCCCceEE
Q 014715 217 AVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G-SP-DLKYAKEVADYLGTVHHEF 292 (420)
Q Consensus 217 aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~-~~-d~~~A~~vA~~lg~~~~~~ 292 (420)
.+...+....++.+++|||.||++++.++.+..... .+.++.++++.+. . ++ +..+++.+|+.+|++++..
T Consensus 7 ~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~ 81 (436)
T PRK10660 7 TLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-----PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVE 81 (436)
T ss_pred HHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEE
Confidence 334455666789999999999999999887643110 1246777777543 2 32 3478899999999999987
Q ss_pred Eech
Q 014715 293 HFTV 296 (420)
Q Consensus 293 ~~~~ 296 (420)
.++.
T Consensus 82 ~~~~ 85 (436)
T PRK10660 82 RVQL 85 (436)
T ss_pred EEec
Confidence 7653
No 115
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.88 E-value=0.00015 Score=63.44 Aligned_cols=122 Identities=23% Similarity=0.214 Sum_probs=75.1
Q ss_pred HHHHHHHHhhhhccc----------ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC---CCc-H
Q 014715 210 LRQAFENAVIKRLMT----------DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPD-L 275 (420)
Q Consensus 210 l~~~l~~aV~~rl~~----------~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~---~~d-~ 275 (420)
+.+.+.+.+..|+.. +.++++++|||.|||+.+-++.+.. +++.... .+. +
T Consensus 35 ~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g---------------~~v~p~t~~Lp~~ir 99 (255)
T COG1365 35 VYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAG---------------FTVDPGTAILPDHIR 99 (255)
T ss_pred HHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhc---------------eeeccccccCCHHHh
Confidence 445555556666642 2679999999999999888887653 3332211 122 3
Q ss_pred HHHHHHHHHhCCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 276 KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 276 ~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
..+..+++.+|..+..+... +..+.+-.- ...+.++.-+.++-.-....++++.+++++.+| |-|-.||..
T Consensus 100 ~n~~~l~~~lg~~p~yveed----l~~i~kGal-nGRfhpCGRCh~~I~~~V~~k~re~di~~vafG---DlLs~G~~s 170 (255)
T COG1365 100 RNKEELETLLGEVPEYVEED----LEDIEKGAL-NGRFHPCGRCHSMIENAVMDKARELDIDVVAFG---DLLSTGYGS 170 (255)
T ss_pred HHHHHHHHHHccCHHHHHHH----HHHHHhhhc-cCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEc---ccccccccc
Confidence 45778899999876554322 222222111 123333333445555677888999999999999 556678753
No 116
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=97.86 E-value=0.00014 Score=67.52 Aligned_cols=136 Identities=21% Similarity=0.243 Sum_probs=79.9
Q ss_pred HHHHHHHhhhhcc--cccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHHHHhC
Q 014715 211 RQAFENAVIKRLM--TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLG 286 (420)
Q Consensus 211 ~~~l~~aV~~rl~--~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA~~lg 286 (420)
.+.+..-++.++. ....+.+-+|||+||+++++++.+.+.+. . .-..+.++...+. ...+..-|+.+++.+|
T Consensus 9 ~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~-~---~~~~~~av~mP~~~~~~~~~~da~~~~~~lg 84 (268)
T COG0171 9 INRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKG-D---SKENVLAVRLPYGYTVQADEEDAQDLAEALG 84 (268)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccc-c---chhheeeEECCCCCccccCHHHHHHHHHHhC
Confidence 3333344444443 22456688999999999999999887420 0 0023777777665 4567888999999999
Q ss_pred CCceEEEechhhhHHHH-HHHHHhhcc-----CCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 287 TVHHEFHFTVQDGIDAI-EEVIYHVET-----YDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 287 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
++..++++++ ..+.+ ..+...... ....++.+-..|-.++..|.+.|.=|+=||+ .+|+.-||-
T Consensus 85 ~~~~~i~I~~--~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn-~sE~~~Gy~ 154 (268)
T COG0171 85 IDYKEINIKP--AVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGN-KSELALGYF 154 (268)
T ss_pred CceEEEecHH--HHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCc-HHHHhcCce
Confidence 9977777653 33432 222211111 1111122233444555666666655655554 567777774
No 117
>PRK08576 hypothetical protein; Provisional
Probab=97.85 E-value=0.00011 Score=73.16 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=65.6
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHHHHhCCCceEEEechhhhHHHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~ 304 (420)
++.+.+|||.||++++.++.+.. .++.++++... .....++++++++.+|++++...++.. ..
T Consensus 236 rVvVafSGGKDStvLL~La~k~~----------~~V~aV~iDTG~e~pet~e~~~~lae~LGI~lii~~v~~~---~~-- 300 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAF----------GDVTAVYVDTGYEMPLTDEYVEKVAEKLGVDLIRAGVDVP---MP-- 300 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhC----------CCCEEEEeCCCCCChHHHHHHHHHHHHcCCCEEEcccCHH---HH--
Confidence 79999999999999999888765 24667766433 223468899999999998866222211 11
Q ss_pred HHHHhhccCCcc-cccchhHHHHHHHHHHhcCCEEEEeccCCcc
Q 014715 305 EVIYHVETYDVT-TIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 305 ~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
......+... ..+...-...+.+.+++.|+.++++|+-.||
T Consensus 301 --~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~dE 342 (438)
T PRK08576 301 --IEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGE 342 (438)
T ss_pred --hhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHH
Confidence 1101111110 1111111224556677789999999998777
No 118
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.82 E-value=0.00024 Score=67.86 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=75.0
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC-CCcHHHHHHHHHHhCCC-ceEEEechhhhH-H
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGTV-HHEFHFTVQDGI-D 301 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~d~~~A~~vA~~lg~~-~~~~~~~~~~~~-~ 301 (420)
..+|.+++|||||+|++.-.+.+.. |..+.|||+.... .+|...+++-|..+|.. |..+.... ++. +
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~---------~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~re-eF~~~ 73 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKG---------GAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDARE-EFVED 73 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhc---------CceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHH-HHHHH
Confidence 3578999999999999988887765 3689999987765 48899999999999987 66666654 343 3
Q ss_pred HHHHHHHhhccCCc-ccccchhHHHH----HHHHHHhcCCEEE---EeccCCccc
Q 014715 302 AIEEVIYHVETYDV-TTIRASTPMFL----MSRKIKSLGVKMV---ISGEGSDEI 348 (420)
Q Consensus 302 ~~~~~~~~~~~~~~-~~~~~~~~~~~----l~~~a~~~g~~v~---ltG~GgDel 348 (420)
.+-..+.....+.. =.+..+++.-+ +.+.|++.|+..+ .||-|-|++
T Consensus 74 yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 74 YIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 33333332221110 01111222222 3456778888877 467778877
No 119
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.51 E-value=0.001 Score=70.63 Aligned_cols=89 Identities=25% Similarity=0.223 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhhccc--ccceeEEecCCcchHHHHHHH-------HHHhccc--cc----------cccc--------
Q 014715 208 LVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASIT-------ARHLAGT--KA----------ARQW-------- 258 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~--~~~v~~~LSGGlDSs~iaa~~-------~~~~~~~--~~----------~~~~-------- 258 (420)
+++.......+..+++. ...+.+.||||+||+++|+++ .+.+... +. .+.+
T Consensus 329 ~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (700)
T PLN02339 329 EEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEF 408 (700)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhh
Confidence 45555555555555542 345778899999999988885 3333110 00 0000
Q ss_pred -CCcceeEEeecCCCC--cHHHHHHHHHHhCCCceEEEech
Q 014715 259 -GTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTV 296 (420)
Q Consensus 259 -~~~~~~~t~~~~~~~--d~~~A~~vA~~lg~~~~~~~~~~ 296 (420)
+.-+++++++...+. ....|+++|+.+|+.|+++++++
T Consensus 409 ~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~ 449 (700)
T PLN02339 409 AKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDG 449 (700)
T ss_pred hcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 001466666544443 45789999999999999998864
No 120
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=97.40 E-value=0.0009 Score=63.15 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=67.6
Q ss_pred eeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCc-HHHHHHHHHHhCCCceEEEechhhhHHHHHH
Q 014715 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (420)
Q Consensus 228 v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~ 305 (420)
..+++|||.||++++.++.+..... +.++..+++... ..+| ..+..++++.+|++++.+... +...
T Consensus 22 ~vv~~SGGKDS~VlLhLa~kaf~~~------~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~v~~~~--~~~~---- 89 (294)
T TIGR02039 22 PVMLYSIGKDSSVLLHLARKAFYPG------PLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLIVHSNE--EGIA---- 89 (294)
T ss_pred cEEEEecChHHHHHHHHHHHHhccc------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEEech--hhhh----
Confidence 4688999999999999999886421 145667776442 1344 367889999999998776542 2111
Q ss_pred HHHhhccCC--cccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 306 VIYHVETYD--VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 306 ~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
.....+. ....+...-...+.+.+.+.|.+++++|.--||-
T Consensus 90 --~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe 132 (294)
T TIGR02039 90 --DGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE 132 (294)
T ss_pred --cCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh
Confidence 0000110 0001122223456677778899999999998874
No 121
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00098 Score=71.34 Aligned_cols=132 Identities=23% Similarity=0.206 Sum_probs=88.6
Q ss_pred CeEEEEeeeeecCCCC--CCCCeeecCCcEEEEEeeEEc------ChHHHHHHh-------------cCCCccCCChHHH
Q 014715 43 DFYLAHQRLAIIDPAS--GDQPLYNEDKKIVVTVNGEIY------NHEALRERL-------------TNHKFRTGSDCDV 101 (420)
Q Consensus 43 ~~~l~h~rl~~~~~~~--~~qP~~~~~~~~~~~~nG~i~------n~~~L~~~l-------------~~~~~~~~~d~e~ 101 (420)
.++|.|+|.++....+ -+||+. ++.|||||. |+..-|..+ .++.-...||+..
T Consensus 285 ~~AlvHsRFSTNTfPsWdrAQPmR------~l~HNGEINTlrGN~NwMraREg~mks~~~~~e~~kl~Pive~~~SDSa~ 358 (2142)
T KOG0399|consen 285 HFALVHSRFSTNTFPSWDRAQPMR------FLAHNGEINTLRGNKNWMRAREGVMKSAVFKDELNKLLPIVEEGGSDSAA 358 (2142)
T ss_pred cceeeeeccccCCCCCccccccch------hhhccCceeeeccchhHHHHHHHhhhcchhhhhhhhhcccccCCCCchhh
Confidence 4889999999987654 679986 689999995 333222211 1222234566543
Q ss_pred ---HHHHHHHHh---------------------------------HHHhhhccCceEEEEEECCCCEEEEEEcCCCCccE
Q 014715 102 ---IAHLYEEYG---------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSL 145 (420)
Q Consensus 102 ---l~~~~~~~g---------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pL 145 (420)
+++++-+.| .-.++.++|.--+.+-|. +.+-+.-|+-|.||.
T Consensus 359 lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~ 436 (2142)
T KOG0399|consen 359 LDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPWDGPALLTFSDG--RYCGAILDRNGLRPA 436 (2142)
T ss_pred hhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHHHhhcCCCCCCceEEEecCC--ceeeeeeccCCCcce
Confidence 344444443 124677899988888888 777888899999998
Q ss_pred EEEEecCcEEEEeeCccccccccccc---eeeCCCcEEEc
Q 014715 146 YIGWGLDGSIWISSELKGLNDDCEHF---EAFPPGHLYSS 182 (420)
Q Consensus 146 yy~~~~~~~~~faSe~~~l~~~~~~i---~~l~pG~~~~~ 182 (420)
-|+...++.++.|||+..+--....| -+|.||.++.+
T Consensus 437 Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllV 476 (2142)
T KOG0399|consen 437 RYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLV 476 (2142)
T ss_pred eeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEE
Confidence 66666689999999987653322222 25889988654
No 122
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.0031 Score=57.69 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeec--CCCCcHHHHHH-HHHHh
Q 014715 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKE-VADYL 285 (420)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~d~~~A~~-vA~~l 285 (420)
.+.+...+.++.++. +.++-+.||||+|||+.|.++.+.. |.++++.-+.. -...|.+.... ..+++
T Consensus 6 ~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~Ai---------Gd~l~cvfVD~GLlR~~E~e~V~~~f~~~~ 75 (315)
T COG0519 6 NFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAI---------GDQLTCVFVDHGLLRKGEAEQVVEMFREHL 75 (315)
T ss_pred HHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHh---------hcceEEEEecCCcccCCcHHHHHHHHHhhc
Confidence 344444455666655 6678899999999999999999887 45777766633 22345554444 44558
Q ss_pred CCCceEEE
Q 014715 286 GTVHHEFH 293 (420)
Q Consensus 286 g~~~~~~~ 293 (420)
|++...++
T Consensus 76 ~~nl~~Vd 83 (315)
T COG0519 76 GLNLIVVD 83 (315)
T ss_pred CCceEEEc
Confidence 88866654
No 123
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=97.20 E-value=0.0032 Score=61.18 Aligned_cols=114 Identities=21% Similarity=0.311 Sum_probs=61.7
Q ss_pred ccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC-CcH--HHHHHHH-HHhCCCceEEEechhh
Q 014715 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDL--KYAKEVA-DYLGTVHHEFHFTVQD 298 (420)
Q Consensus 223 ~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~d~--~~A~~vA-~~lg~~~~~~~~~~~~ 298 (420)
.+.+++-++||||+||-+-+.++.+. |.+++.+++..++. .+. .-+..++ ..+...++.+.+..-+
T Consensus 173 Gt~Gk~l~LlSGGIDSPVA~~l~mkR----------G~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~ 242 (383)
T COG0301 173 GTQGKVLLLLSGGIDSPVAAWLMMKR----------GVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVP 242 (383)
T ss_pred ccCCcEEEEEeCCCChHHHHHHHHhc----------CCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEc
Confidence 34567789999999999999888775 46777777754433 222 2223333 3343333222222222
Q ss_pred hHHHHHHHHHhh-ccCCcccccchhHHHHHH-HHHHhcCCEEEEeccCCccc
Q 014715 299 GIDAIEEVIYHV-ETYDVTTIRASTPMFLMS-RKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 299 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~a~~~g~~v~ltG~GgDel 348 (420)
+.+...++.... +.+.. .+ .--.||.++ +.|.+.|+..+.||+.--++
T Consensus 243 f~~v~~~i~~~~~~~y~~-v~-~rR~M~riA~~iae~~g~~aIvtGEsLGQV 292 (383)
T COG0301 243 FTEVQEEILEKVPESYRC-VL-LKRMMYRIAEKLAEEFGAKAIVTGESLGQV 292 (383)
T ss_pred hHHHHHHHHhhcCcccee-hH-HHHHHHHHHHHHHHHhCCeEEEecCcchhh
Confidence 223333333222 22221 11 112344444 46778899999999875544
No 124
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=97.18 E-value=0.0012 Score=61.05 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=44.8
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCc-HHHHHHHHHHhCCCceEEEec
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFT 295 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~vA~~lg~~~~~~~~~ 295 (420)
++.+.+|||.||++++.++.+.. .++..+.+... ..+| .++++++++.+|++.+++...
T Consensus 42 ~i~vs~SGGKDS~vlL~L~~~~~----------~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~ 102 (241)
T PRK02090 42 RLALVSSFGAEDAVLLHLVAQVD----------PDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPD 102 (241)
T ss_pred CEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 48999999999999999998853 45666665332 2343 468899999999998876543
No 125
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=97.06 E-value=0.0049 Score=55.87 Aligned_cols=60 Identities=27% Similarity=0.225 Sum_probs=41.5
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC-------CCcHHHHHHHHHHhCCCceEEEech
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 296 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-------~~d~~~A~~vA~~lg~~~~~~~~~~ 296 (420)
++.+++|||.||++-+..+.+.. .....+|+-..+ ..+...++..|+.+|++++.+..+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~~----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEEH----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHcC----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 46789999999998877666541 123333332221 2467889999999999998776543
No 126
>PRK08557 hypothetical protein; Provisional
Probab=97.05 E-value=0.0056 Score=60.86 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=43.6
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCc-HHHHHHHHHHhCCCceEEE
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 293 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~vA~~lg~~~~~~~ 293 (420)
..++.+.+|||.||++++.++.+.. .++..+++... ..+| .++++++++.+|++.+.+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~----------~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVI----------PDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhC----------CCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3568899999999999998887764 34555555432 1233 4689999999999887764
No 127
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=97.00 E-value=0.0019 Score=56.26 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=53.8
Q ss_pred eeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCc-HHHHHHHHHHhCCCceEEEechhhhHHHHHH
Q 014715 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (420)
Q Consensus 228 v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~ 305 (420)
+.+.+|||-||++++.++.+... ++..+.+... +.++ ..+++++++.+|++.+.+... ......+..
T Consensus 2 i~vs~SGGKDS~v~l~l~~~~~~----------~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 70 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLAREAGR----------KVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPP-ETFEQRFIL 70 (174)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHT----------TCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETT-SHHHHHHHH
T ss_pred eEEEecCCHHHHHHHHHHHHhcC----------CCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccc-cchhhcccc
Confidence 67899999999999999998873 3333333222 2344 478899999999984444332 222222211
Q ss_pred HHHhhccCCcccccc----hhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 306 VIYHVETYDVTTIRA----STPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 306 ~~~~~~~~~~~~~~~----~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
.- .+.. ..+. ..-.--+.+..++.+..++++|.-+||=
T Consensus 71 ~~----~~~~-~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es 112 (174)
T PF01507_consen 71 YG----WPSK-LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADES 112 (174)
T ss_dssp HH----HSTT-HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTST
T ss_pred cc----ccch-hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhch
Confidence 11 1110 0000 0001123344556677899999999983
No 128
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.85 E-value=0.0071 Score=57.43 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=66.3
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCc-HHHHHHHHHHhCCCceEEEechhhhHHHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~ 304 (420)
++++++|||.||++++.++.+.+... +.++..+++... ..+| ..+..++++.+|++++.+.. ++...
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~------~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~--~~~~~--- 107 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPT------RPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN--PDGIA--- 107 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhccc------CCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC--hHHHH---
Confidence 46799999999999999999876321 145667776543 2244 47888999999998776542 22111
Q ss_pred HHHHhhccCC--cccccchhHHHHHHHHHHhcCCEEEEeccCCcc
Q 014715 305 EVIYHVETYD--VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 305 ~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
. ....+. ....+...-...+.+.+.+.|.+++++|.--||
T Consensus 108 ~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE 149 (312)
T PRK12563 108 R---GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDE 149 (312)
T ss_pred h---CCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHH
Confidence 1 111111 000111112234555566678999999988887
No 129
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.005 Score=56.95 Aligned_cols=122 Identities=19% Similarity=0.259 Sum_probs=74.7
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHH
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~ 304 (420)
.+.+.++.|||+|+|+|++-+.++ |-.+.+|........|.+.|++-|...|..-..++=-.++++ .
T Consensus 5 ~~~vVLAySGgLDTscil~WLkeq----------GyeViay~AnvGQ~edfe~ar~kAlk~Gakk~~~ed~~~eFv---e 71 (412)
T KOG1706|consen 5 KKSVVLAYSGGLDTSCILAWLKEQ----------GYEVIAYLANVGQKEDFEEARKKALKSGAKKVVVEDVREEFV---E 71 (412)
T ss_pred CceEEEEecCCcCchhhhHHHHhc----------CceEEEeeccccchhhHHHHHHhhhhcCceEEEehhhhHHHH---h
Confidence 355678899999999999988875 478999987776677899999999999987544332223333 2
Q ss_pred HHHHhh-------c-cCCc-ccccchhHHHHHHHHHHhcCCEEE---EeccCCcccccccccccCCC
Q 014715 305 EVIYHV-------E-TYDV-TTIRASTPMFLMSRKIKSLGVKMV---ISGEGSDEIFGGYLYFHKAP 359 (420)
Q Consensus 305 ~~~~~~-------~-~~~~-~~~~~~~~~~~l~~~a~~~g~~v~---ltG~GgDelf~Gy~~~~~~~ 359 (420)
+.+|.. | .+.. +.+.-..-.....+.|++.|+..+ .||-|-|++-.--.+|...|
T Consensus 72 dfi~Pa~qs~a~YEd~YLLGTSlaRp~ia~~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~ysl~P 138 (412)
T KOG1706|consen 72 DFIWPALQSSALYEDRYLLGTSLARPVIAKAQVDVAQREGAKAVSHGCTGKGNDQVRFELTFYSLKP 138 (412)
T ss_pred hcchhhhhhcchhhceeeeccccccchhhhhhhhHHhhcCceeeecccccCCCcceeeeeeeeccCC
Confidence 333321 1 1110 000000001122234566677655 68889999876655555443
No 130
>PRK13795 hypothetical protein; Provisional
Probab=96.67 E-value=0.011 Score=62.47 Aligned_cols=60 Identities=30% Similarity=0.387 Sum_probs=44.8
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEee--cCCCCcHHHHHHHHHHhCCCceEEEe
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHF 294 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~d~~~A~~vA~~lg~~~~~~~~ 294 (420)
+.++.+.+|||.||++++.++.+.. .++..+.+. +......++++++++.+|++++.+..
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~----------~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~ 304 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREAL----------KDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADA 304 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhC----------CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcc
Confidence 3579999999999999999998865 245555543 32223457899999999998877654
No 131
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=96.31 E-value=0.039 Score=50.38 Aligned_cols=63 Identities=6% Similarity=0.021 Sum_probs=44.4
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCc-HHHHHHHHHHhCCCceEEEechh
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQ 297 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~vA~~lg~~~~~~~~~~~ 297 (420)
.++.+..|||.||++++.++.+... .++..+.+... ..+| .+++.++++.++...+.+...+.
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~~---------~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~ 90 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSISE---------PMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGC 90 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhC---------CCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCc
Confidence 4588999999999999999998751 24555555433 2234 47899999999965555544443
No 132
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.30 E-value=0.014 Score=44.36 Aligned_cols=34 Identities=38% Similarity=0.553 Sum_probs=24.3
Q ss_pred eeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEee
Q 014715 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG 268 (420)
Q Consensus 228 v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~ 268 (420)
+.+.+|||.||..++.++.+.... +..+..++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~-------~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSG-------GPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhc-------CCCEEEEEeH
Confidence 357899999999999998875311 1456666654
No 133
>PRK13794 hypothetical protein; Provisional
Probab=96.30 E-value=0.046 Score=55.63 Aligned_cols=59 Identities=22% Similarity=0.216 Sum_probs=43.5
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEee--cCCCCcHHHHHHHHHHhCCCceEEE
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFH 293 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~d~~~A~~vA~~lg~~~~~~~ 293 (420)
.++.+.+|||.||++++.++.+.+. .++..+.+. ++-....++++++++.+|++.+.+.
T Consensus 248 ~~v~vs~SGGKDS~v~L~L~~~~~~---------~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~ 308 (479)
T PRK13794 248 KPVTVAYSGGKDSLATLLLALKALG---------INFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTK 308 (479)
T ss_pred CCEEEEecchHHHHHHHHHHHHHhC---------CCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEc
Confidence 4789999999999999999887752 345555553 3222335678999999999876654
No 134
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=96.06 E-value=0.043 Score=49.61 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=41.5
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCcH-HHHHHHHHHhCCCceEE
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL-KYAKEVADYLGTVHHEF 292 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d~-~~A~~vA~~lg~~~~~~ 292 (420)
++.+.+|||.||++++-++.+.. .++..+.+... ..+|. ++.+++++.++++.+.+
T Consensus 15 ~~~~s~SgGKDS~Vll~L~~~~~----------~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~ 72 (212)
T TIGR00434 15 HLVYSTSFGIQGAVLLDLVSKIS----------PDIPVIFLDTGYHFPETYELIDELTERYPLNIKVY 72 (212)
T ss_pred CEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 68999999999999999998765 35555655433 23453 57899999999875544
No 135
>PRK06850 hypothetical protein; Provisional
Probab=95.79 E-value=0.15 Score=51.89 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=65.4
Q ss_pred HHhhhhc-ccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCcH-HH-------HHHHHHHh
Q 014715 216 NAVIKRL-MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL-KY-------AKEVADYL 285 (420)
Q Consensus 216 ~aV~~rl-~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d~-~~-------A~~vA~~l 285 (420)
+.++... ..+.|+.|.+|||-||++++.++-+.+..-.. .....+++.++.... +.|+. .+ .+..|+..
T Consensus 24 ~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~-e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~ 102 (507)
T PRK06850 24 EEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPP-EKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQ 102 (507)
T ss_pred HHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcch-hccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 4444433 34678999999999999999888765421100 000023444443221 23332 22 33456777
Q ss_pred CCCceEEEechhhhHHHHHHHHHhhccCCcc-cccchh------HH-HHHHHHHHhcCCEEEEeccCCccc
Q 014715 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVT-TIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 286 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~-~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
|++.....++|..-...+..++.. ..|.+. ..+... |+ .++.+..++.|-.++++|.-.||=
T Consensus 103 glpi~~~~v~P~~~~sFwv~liGr-G~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES 172 (507)
T PRK06850 103 GLPITPHKLTPKINDTFWVNLIGK-GYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAES 172 (507)
T ss_pred CCceEEEeeCCCcchhHHHHHhcC-CCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeecccc
Confidence 887765555554222333333321 111111 112111 11 123333345577889999888773
No 136
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=95.49 E-value=0.12 Score=51.69 Aligned_cols=122 Identities=21% Similarity=0.192 Sum_probs=62.0
Q ss_pred cccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCcH-H-------HHHHHHHHhCCCceEEEe
Q 014715 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL-K-------YAKEVADYLGTVHHEFHF 294 (420)
Q Consensus 224 ~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d~-~-------~A~~vA~~lg~~~~~~~~ 294 (420)
.+.|..|.+|||-||++++.++-+.+..-.. .....+++.++.... +.|+. . ..+..|+..|++.....+
T Consensus 12 ~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~-e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~v 90 (447)
T TIGR03183 12 DDIPWVVGYSGGKDSTAVLQLIWNALAALPA-EQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEPHRL 90 (447)
T ss_pred cCCceEEEeCCCHHHHHHHHHHHHHHHhccc-cccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Confidence 4578899999999999999887765421100 000023444333221 22332 2 234566777877665555
Q ss_pred chhhhHHHHHHHHHhhccCCc-ccccchh------H-HHHHHHHHHhcCCEEEEeccCCcc
Q 014715 295 TVQDGIDAIEEVIYHVETYDV-TTIRAST------P-MFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~-~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
.|..-...+..++- ...|.+ ...+... | ..++.+.+++.|..++++|.-.||
T Consensus 91 ~P~~~~~Fwv~liG-rG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~E 150 (447)
T TIGR03183 91 TPEIKDTFWVNLIG-KGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAE 150 (447)
T ss_pred CCCcchHHHHHHhc-CCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhh
Confidence 55432233333332 111111 1111111 1 123334444567789999988776
No 137
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.43 E-value=0.078 Score=49.57 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=42.1
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC-CCc-HHHHHHHHHHhCCCceEEE
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFH 293 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~d-~~~A~~vA~~lg~~~~~~~ 293 (420)
.++.+..|||.||++++.++.+... ++..+.+...- -+| ..++.++++++|++..+..
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~k~~~----------~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~ 99 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAAKAFP----------DFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYR 99 (261)
T ss_pred CCeEEEecCchhHHHHHHHHHHhcC----------CCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEec
Confidence 4578999999999999999998763 34455543321 233 5789999999997655544
No 138
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=95.23 E-value=0.097 Score=49.51 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=31.9
Q ss_pred ccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC
Q 014715 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG 271 (420)
Q Consensus 223 ~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 271 (420)
..-..|+|.+|||-||++++.++++...+.+. .++.-+.+++++
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~-----~~i~VlfiD~E~ 68 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENGR-----DKISVLFIDWEA 68 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHHHHhCC-----CceEEEEEcchh
Confidence 34567999999999999999998876544311 266667776654
No 139
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.097 Score=51.24 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=51.0
Q ss_pred hhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEe--ecCCCCcHHHHHHHHHHhCCCceEEEec
Q 014715 218 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFT 295 (420)
Q Consensus 218 V~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~d~~~A~~vA~~lg~~~~~~~~~ 295 (420)
+.+++. +..+-+++|||+||++.++++.+.+.. .++++..+ |+-...|....++....+|++.+.+..+
T Consensus 224 i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~--------~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as 294 (552)
T KOG1622|consen 224 IRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGP--------DRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDAS 294 (552)
T ss_pred HHHHhc-ccceEEEecCCchHHHHHHHHHHhhCC--------CceEEEEecccchhhhHHHHHHHHHHHcCCceEEeech
Confidence 444554 567889999999999999999988742 46777765 4445567777777777799998877654
No 140
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=93.72 E-value=0.94 Score=40.65 Aligned_cols=60 Identities=25% Similarity=0.290 Sum_probs=41.0
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCccee-EEeecCCC-------CcHHHHHHHHHHhCCCceEEEech
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHS-FCVGLEGS-------PDLKYAKEVADYLGTVHHEFHFTV 296 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~-------~d~~~A~~vA~~lg~~~~~~~~~~ 296 (420)
++.+++|||-||..-+..+-+. |..+.. +++-.+.. +....+...|+.+|+++.....+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~----------G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE----------GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc----------CCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc
Confidence 4678999999997766666554 244443 34433222 456889999999999977776654
No 141
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=91.66 E-value=0.45 Score=43.07 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=40.0
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC-------CcHHHHHHHHHHhCCCceEEEec--hh
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-------PDLKYAKEVADYLGTVHHEFHFT--VQ 297 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-------~d~~~A~~vA~~lg~~~~~~~~~--~~ 297 (420)
++.+++|||-||+.-+..+.+.. .-...+|+-.++. .-....+..|+.+|+++..+..+ .+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~~----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~ 71 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQH----------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEE 71 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CC
T ss_pred cEEEEEcCcHHHHHHHHHHHHhC----------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccc
Confidence 46789999999998766665541 1223344432221 23456788899999999988876 33
Q ss_pred hhHHHHHHHH
Q 014715 298 DGIDAIEEVI 307 (420)
Q Consensus 298 ~~~~~~~~~~ 307 (420)
+..+.+.+.+
T Consensus 72 ~~~~~l~~~l 81 (218)
T PF01902_consen 72 DYVEDLKEAL 81 (218)
T ss_dssp CHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 4444444443
No 142
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=90.76 E-value=1.2 Score=40.43 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=38.7
Q ss_pred eeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC-------CCcHHHHHHHHHHhCCCceEEEe
Q 014715 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHF 294 (420)
Q Consensus 228 v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-------~~d~~~A~~vA~~lg~~~~~~~~ 294 (420)
+.+++|||-||+.-+..+.+. . ..+..+|+-..+ .......+..|+.+|+++..+..
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~-~---------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKE-H---------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHh-C---------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 568999999999877766654 2 233344443222 12557889999999999876543
No 143
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=83.18 E-value=5.4 Score=39.95 Aligned_cols=69 Identities=29% Similarity=0.390 Sum_probs=40.3
Q ss_pred eeEEecCCcchHHHHHHHHHHh-------cccc--cc---------cccC---------CcceeEEeecCCCC-c-HHHH
Q 014715 228 FGVLLSGGLDSSLVASITARHL-------AGTK--AA---------RQWG---------TQLHSFCVGLEGSP-D-LKYA 278 (420)
Q Consensus 228 v~~~LSGGlDSs~iaa~~~~~~-------~~~~--~~---------~~~~---------~~~~~~t~~~~~~~-d-~~~A 278 (420)
.-+.||||+||+++|++..... .+.+ .. +++. .-+.|.-+|.+.+. | +.-|
T Consensus 352 fflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~ra 431 (706)
T KOG2303|consen 352 FFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRRA 431 (706)
T ss_pred eEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHHH
Confidence 4577999999999988754321 1110 00 0000 01123333444433 3 3578
Q ss_pred HHHHHHhCCCceEEEech
Q 014715 279 KEVADYLGTVHHEFHFTV 296 (420)
Q Consensus 279 ~~vA~~lg~~~~~~~~~~ 296 (420)
+.+|+.+|.-|..+.++.
T Consensus 432 k~La~~igs~H~~i~iD~ 449 (706)
T KOG2303|consen 432 KELANQIGSYHIDLNIDT 449 (706)
T ss_pred HHHHHhhcceeeeeeehH
Confidence 999999999998888754
No 144
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=80.90 E-value=5.2 Score=38.03 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=65.8
Q ss_pred ccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEee--cCCC-CcHH-HHHHHHHHhCCCceEEEechhh
Q 014715 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGS-PDLK-YAKEVADYLGTVHHEFHFTVQD 298 (420)
Q Consensus 223 ~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~-~d~~-~A~~vA~~lg~~~~~~~~~~~~ 298 (420)
.....|++--|||-||+++|..+..+.... ..|.++...++. ..+. ++.. ..++....++++..++. +++
T Consensus 49 ~rge~v~igasGgkdstvlA~v~~~Ln~r~----~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs--~~d 122 (347)
T KOG2840|consen 49 ARGERVAIGASGGKDSTVLAYVLDALNERH----DYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVS--YKD 122 (347)
T ss_pred CCCCccccccccchhHHHHHHHHHHhhhhc----CCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEec--HHH
Confidence 344568999999999999999887765332 223455555542 2232 3443 44566678999988754 444
Q ss_pred hHH-----HHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 299 GID-----AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 299 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
+.. .+...+. .+.-+..+++...-.-.+-+.+...|+.-+.||+.+|..
T Consensus 123 l~~~~tmd~i~~~i~-~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~ 176 (347)
T KOG2840|consen 123 LYGEWTMDEIVSEIG-QEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDW 176 (347)
T ss_pred HhccchHHHHHHHHh-hhhhcCceeecHHHHHHHHhhccccchhhhhhcccchHH
Confidence 433 2222221 111121122221222233334445566778899999875
No 145
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=65.99 E-value=31 Score=30.06 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=53.3
Q ss_pred EecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHH------HHHHHHHHhCCCceEEEechhhhHHHHH
Q 014715 231 LLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLK------YAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (420)
Q Consensus 231 ~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~------~A~~vA~~lg~~~~~~~~~~~~~~~~~~ 304 (420)
..-=|.||+.+.-.+.+. |.++..|-....-.|..+ ..+++|+.++++..+-..+++++++.
T Consensus 4 H~CCaPCs~~~~~~L~~~----------g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~-- 71 (176)
T PF02677_consen 4 HICCAPCSTYPLERLREE----------GFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRA-- 71 (176)
T ss_pred eecCccccHHHHHHHHHC----------CCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHH--
Confidence 344578999887777654 246666655443345433 45678999999866555444444333
Q ss_pred HHHHhhc-cCCc---ccccchhHHHHHHHHHHhcCCEEEEe
Q 014715 305 EVIYHVE-TYDV---TTIRASTPMFLMSRKIKSLGVKMVIS 341 (420)
Q Consensus 305 ~~~~~~~-~~~~---~~~~~~~~~~~l~~~a~~~g~~v~lt 341 (420)
+...+ .|.. ...+..+.+-..++.|++.|.+..=|
T Consensus 72 --v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 72 --VKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred --HhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 32222 2221 11122233345577788877655443
No 146
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=64.48 E-value=14 Score=32.75 Aligned_cols=49 Identities=8% Similarity=0.183 Sum_probs=35.2
Q ss_pred CcchHHHHHHHHHHhcccccccccCCcceeEEeecCC-CCc-HHHHHHHHHHhCCCceEEE
Q 014715 235 GLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFH 293 (420)
Q Consensus 235 GlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~d-~~~A~~vA~~lg~~~~~~~ 293 (420)
|+||.+++.|+.+.. .++..+.+...- .+| .+++.++++.+|++.+.+.
T Consensus 2 ~~~s~Vll~L~~~~~----------~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~ 52 (191)
T TIGR02055 2 GAEDVVLVDLAAKVR----------PDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLS 52 (191)
T ss_pred ChHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 789999999999876 345555553321 234 4689999999999876654
No 147
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=64.03 E-value=4.8 Score=41.82 Aligned_cols=34 Identities=32% Similarity=0.354 Sum_probs=30.1
Q ss_pred cchhhHHHhhcCcccccCcCCHHHHHHHHcCCcccccc
Q 014715 380 CLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMV 417 (420)
Q Consensus 380 l~r~dr~~~~~gie~r~PfLd~~lv~~a~~lP~~~k~~ 417 (420)
+.+. + +|+.++|.|+||+|. ++++.+||++.|..
T Consensus 415 i~~~-~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~~ 448 (542)
T COG0367 415 LNRD-R-SMAKKLERRVPFSDG--VELPEEIPWREKIA 448 (542)
T ss_pred cchh-h-hhhhhhheecccccc--hhhHhhCChhhhhh
Confidence 3344 7 999999999999999 99999999999975
No 148
>PLN02309 5'-adenylylsulfate reductase
Probab=55.70 E-value=47 Score=33.72 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=37.2
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCc-HHHHHHHHHHhCCCceEEE
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 293 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~vA~~lg~~~~~~~ 293 (420)
.++++..|||-|| +++.++.+.. .++..|+++.. ..+| ..++.++++++|++.+.+.
T Consensus 111 ~~ia~~~SG~ed~-vll~l~~~~~----------~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~ 169 (457)
T PLN02309 111 NDIAIAFSGAEDV-ALIEYAHLTG----------RPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMF 169 (457)
T ss_pred CCEEEEecchHHH-HHHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 4688889966665 5556666543 34555555432 1234 5789999999999776653
No 149
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=50.21 E-value=62 Score=32.92 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=37.3
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC-CCCc-HHHHHHHHHHhCCCceEE
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEF 292 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~vA~~lg~~~~~~ 292 (420)
.++++..|||-|| +++.++.+.. .++..+++... ..+| ..++.+++++||++.+.+
T Consensus 116 ~~iavasSG~eds-vLlhl~~~~~----------~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 116 NDIAIAFSGAEDV-ALIEYAHLTG----------RPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred CCEEEEeccHHHH-HHHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 3588999977775 4566666654 34555555432 1234 578899999999987655
No 150
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=46.51 E-value=16 Score=33.01 Aligned_cols=18 Identities=44% Similarity=0.440 Sum_probs=14.2
Q ss_pred ccceeEEecCCcchHHHH
Q 014715 225 DVPFGVLLSGGLDSSLVA 242 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~ia 242 (420)
.+-.|++||||+||+.=.
T Consensus 54 kGy~g~llSGGm~srg~V 71 (275)
T COG1856 54 KGYEGCLLSGGMDSRGKV 71 (275)
T ss_pred cCceeEEEeCCcCCCCCc
Confidence 345699999999999543
No 151
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=39.41 E-value=1.2e+02 Score=25.78 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=38.5
Q ss_pred CCcHHHHH---HHHHHhCCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 272 SPDLKYAK---EVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 272 ~~d~~~A~---~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
..|++..+ .+.+.+|++++...++.. .+|+ .++-.++.+++.|++|++.|-||-.-
T Consensus 12 ~SD~~~mk~Aa~~L~~fgi~ye~~VvSAH-------------RTPe--------~m~~ya~~a~~~g~~viIAgAGgAAH 70 (162)
T COG0041 12 KSDWDTMKKAAEILEEFGVPYEVRVVSAH-------------RTPE--------KMFEYAEEAEERGVKVIIAGAGGAAH 70 (162)
T ss_pred cchHHHHHHHHHHHHHcCCCeEEEEEecc-------------CCHH--------HHHHHHHHHHHCCCeEEEecCcchhh
Confidence 35665544 555778888776555422 1222 23445667888999999999998665
Q ss_pred cccc
Q 014715 349 FGGY 352 (420)
Q Consensus 349 f~Gy 352 (420)
+-|.
T Consensus 71 LPGm 74 (162)
T COG0041 71 LPGM 74 (162)
T ss_pred cchh
Confidence 5554
No 152
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.21 E-value=3.8e+02 Score=23.69 Aligned_cols=103 Identities=13% Similarity=0.050 Sum_probs=55.0
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHH------HHHHHHHHhCCCceEEEe-chhhh
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLK------YAKEVADYLGTVHHEFHF-TVQDG 299 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~------~A~~vA~~lg~~~~~~~~-~~~~~ 299 (420)
++-+...-+.||+-++-.+.+.. .++..|-....-.|..+ ..+++|+++|++..+-+. +.+.+
T Consensus 5 kiLlH~CCAPcs~y~le~l~~~~----------~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w 74 (204)
T COG1636 5 KLLLHSCCAPCSGYVLEKLRDSG----------IKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKW 74 (204)
T ss_pred eeEEEeecCCCcHHHHHHHHhcC----------cceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHH
Confidence 45566667889998877766542 35555544332234322 345789999987665444 22222
Q ss_pred HHHHHHHHHhhc-cCCc---ccccchhHHHHHHHHHHhcCCEEEEecc
Q 014715 300 IDAIEEVIYHVE-TYDV---TTIRASTPMFLMSRKIKSLGVKMVISGE 343 (420)
Q Consensus 300 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 343 (420)
.+ .+...| .|.. ...+..+.+-..++.|.+.|.+++=|-.
T Consensus 75 ~~----~vKg~E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ftttL 118 (204)
T COG1636 75 FE----RVKGMEDEPEGGKRCTMCFDMRLEKTAKKAKELGFDVFTTTL 118 (204)
T ss_pred HH----HhhcchhCCCCCchhHhHHHHHHHHHHHHHHHcCCchhhhhe
Confidence 22 232222 2221 1122223334467888898887765543
No 153
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=23.23 E-value=74 Score=31.22 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=30.1
Q ss_pred CEEEEEEEcCCCCc-hHHHHHHHHHHHhcccCC-CCCCce
Q 014715 1 MCGILAVLGCSDDS-QAKRVRVLELSRRLKHRG-PDWSGL 38 (420)
Q Consensus 1 McGI~G~~~~~~~~-~~~~~~~~~~~~~l~~RG-pd~~g~ 38 (420)
||||.|+.+.++.+ ....+...+|+..|+||| +++.|.
T Consensus 12 aCGig~i~~~~g~~sh~iv~~~~~~L~~m~hRG~~~adg~ 51 (371)
T COG0067 12 ACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGY 51 (371)
T ss_pred cCcEEEEEecCCCcchhHHHHHHHHHHhhhccCCCCCCcc
Confidence 89999999988765 334566788999999999 776664
No 154
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=23.14 E-value=30 Score=16.15 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=9.0
Q ss_pred hhcCcccccCcCC
Q 014715 388 SAWGLEARVPFLD 400 (420)
Q Consensus 388 ~~~gie~r~PfLd 400 (420)
|.|+...|+|-|+
T Consensus 1 mthsmrlrfptln 13 (14)
T PF08057_consen 1 MTHSMRLRFPTLN 13 (14)
T ss_pred CccceeeeccccC
Confidence 3466778888775
No 155
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=22.86 E-value=2.5e+02 Score=26.06 Aligned_cols=56 Identities=14% Similarity=-0.054 Sum_probs=35.0
Q ss_pred eEEec----CCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHHHHhCCCceEE
Q 014715 229 GVLLS----GGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEF 292 (420)
Q Consensus 229 ~~~LS----GGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA~~lg~~~~~~ 292 (420)
++++| +|.|+...+..++....+. +.++.. .|.. +.+-....-.+|+.||+++...
T Consensus 84 avli~d~~~~g~D~~~tA~~La~ai~~~------~~DLVl--~G~~s~D~~tgqvg~~lAe~Lg~P~vt~ 145 (256)
T PRK03359 84 LIVVIDDQFEQALPQQTASALAAAAQKA------GFDLIL--CGDGSSDLYAQQVGLLVGEILNIPAING 145 (256)
T ss_pred EEEEecCcccCcCHHHHHHHHHHHHHHh------CCCEEE--EcCccccCCCCcHHHHHHHHhCCCceee
Confidence 56666 5789999888888776432 123322 2332 2223355678999999987643
No 156
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=22.62 E-value=5.3e+02 Score=22.81 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=35.8
Q ss_pred HHHHHHhhhh---cccccceeEEecCCcchH-HH-----HHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHH
Q 014715 212 QAFENAVIKR---LMTDVPFGVLLSGGLDSS-LV-----ASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVA 282 (420)
Q Consensus 212 ~~l~~aV~~r---l~~~~~v~~~LSGGlDSs-~i-----aa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA 282 (420)
+.+..||++- ...+.++-++||=|-+++ -| ++.+++. ..+..||++... +|.+.-+.+|
T Consensus 95 dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~-----------~gV~iytIgiG~-~d~~~l~~iA 162 (191)
T cd01455 95 EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALARE-----------PNVNAFVIFIGS-LSDEADQLQR 162 (191)
T ss_pred HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHh-----------CCCEEEEEEecC-CCHHHHHHHH
Confidence 5555666542 223467888998887643 22 2222222 356667766632 3444566777
Q ss_pred HHhCCC
Q 014715 283 DYLGTV 288 (420)
Q Consensus 283 ~~lg~~ 288 (420)
+.-|=.
T Consensus 163 ~~tgG~ 168 (191)
T cd01455 163 ELPAGK 168 (191)
T ss_pred hCCCCc
Confidence 776544
No 157
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=21.81 E-value=1.2e+02 Score=30.46 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=22.4
Q ss_pred EEEEEEEcCCCCch-HHHHHHHHHHHhcccCCCCC
Q 014715 2 CGILAVLGCSDDSQ-AKRVRVLELSRRLKHRGPDW 35 (420)
Q Consensus 2 cGI~G~~~~~~~~~-~~~~~~~~~~~~l~~RGpd~ 35 (420)
|||--+.+.++.+. ...+.-..++..|.|||-.+
T Consensus 1 CGvG~va~~~g~~sh~iv~~al~~L~~m~HRGa~~ 35 (413)
T cd00713 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGGVG 35 (413)
T ss_pred CeEEEEEECCCCchHHHHHHHHHHHhhCcCCCccc
Confidence 99966666666553 22333457788899999644
No 158
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=21.08 E-value=2.9e+02 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCEEEEeccCCc---ccccccc
Q 014715 324 MFLMSRKIKSLGVKMVISGEGSD---EIFGGYL 353 (420)
Q Consensus 324 ~~~l~~~a~~~g~~v~ltG~GgD---elf~Gy~ 353 (420)
.+.+.+.+...|..|++.|.--| |+|.|-+
T Consensus 99 v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~ 131 (201)
T COG1435 99 VYVLNELADRLGIPVICYGLDTDFRGEPFEGSK 131 (201)
T ss_pred HHHHHHHHhhcCCEEEEeccccccccCCCccHH
Confidence 35566767666999999999887 6777654
No 159
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=20.65 E-value=1.9e+02 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCEEEEeccCCcc
Q 014715 325 FLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 325 ~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
..+-+..+++|..|.++|+|-..
T Consensus 493 ~~iV~~lQ~~G~~VaMtGDGvND 515 (673)
T PRK14010 493 INVIREEQAKGHIVAMTGDGTND 515 (673)
T ss_pred HHHHHHHHhCCCEEEEECCChhh
Confidence 34455566678888999998654
No 160
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=20.34 E-value=2.1e+02 Score=22.63 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHh----------HHHhhhccCceEEEEEECCCCEE
Q 014715 98 DCDVIAHLYEEYG----------ENFVDMLDGMFSFVLLDTRDNSF 133 (420)
Q Consensus 98 d~e~l~~~~~~~g----------~~~~~~l~G~fa~v~~d~~~~~l 133 (420)
.++-++....+.| .+++...+|.|++..|--.+..+
T Consensus 52 q~k~~l~~i~e~G~iird~d~glVDFpa~~Ng~~~~lCWK~DE~~i 97 (123)
T COG4911 52 QTKKILDEIIEKGIIIRDIDIGLVDFPAIINGKPAFLCWKIDENDI 97 (123)
T ss_pred HHHHHHHHHHHcCceeeccccccccchhhhCCceEEEEEecCCcce
Confidence 3444555555544 57888999999999997655554
No 161
>PRK05967 cystathionine beta-lyase; Provisional
Probab=20.30 E-value=8.6e+02 Score=24.17 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=53.6
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHHH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~ 306 (420)
+-++++|.|. ..+.+++...+.. |..+....-.+. .-......+++.+|++...+..+. .+.+.+.
T Consensus 80 ~~~v~~sSG~--aAi~~~l~all~~-------GD~Vlv~~~~Y~--~~~~l~~~~l~~~Gi~v~~vd~~~---~e~l~~a 145 (395)
T PRK05967 80 AGTILVPSGL--AAVTVPFLGFLSP-------GDHALIVDSVYY--PTRHFCDTMLKRLGVEVEYYDPEI---GAGIAKL 145 (395)
T ss_pred CCEEEECcHH--HHHHHHHHHhcCC-------CCEEEEccCCcH--HHHHHHHHHHHhcCeEEEEeCCCC---HHHHHHh
Confidence 3467888886 4444443333322 334443322222 223345677888999776665432 2333333
Q ss_pred HH------hhccCCcccccchhHHHHHHHHHHhcCCEEEEecc
Q 014715 307 IY------HVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 343 (420)
Q Consensus 307 ~~------~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 343 (420)
+. .++.|..+.. .....-.+++.+++.|+-+++..-
T Consensus 146 l~~~TklV~lesPsNP~l-~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 146 MRPNTKVVHTEAPGSNTF-EMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred cCcCceEEEEECCCCCCC-cHHHHHHHHHHHHHhCCEEEEECC
Confidence 32 2344443322 123345677888888888887655
Done!