Query 014715
Match_columns 420
No_of_seqs 357 out of 2236
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 16:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 1.6E-86 5.6E-91 679.9 39.0 416 2-417 1-422 (553)
2 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 1.5E-69 5E-74 549.1 24.8 354 43-417 27-416 (503)
3 1jgt_A Beta-lactam synthetase; 100.0 6.2E-69 2.1E-73 545.3 28.3 334 60-417 57-418 (513)
4 1ao0_A Glutamine phosphoribosy 100.0 1.3E-36 4.5E-41 304.9 23.6 231 2-242 1-287 (459)
5 1xff_A D-fructose-6-, glucosam 100.0 1.2E-35 4E-40 273.4 22.4 179 2-190 1-222 (240)
6 1ecf_A Glutamine phosphoribosy 100.0 8.4E-32 2.9E-36 272.7 22.1 179 2-185 1-235 (504)
7 2bpl_A Glucosamine--fructose-6 100.0 1.3E-31 4.5E-36 277.9 21.3 176 2-187 1-219 (608)
8 3mdn_A Glutamine aminotransfer 99.9 9.5E-27 3.2E-31 216.7 11.6 141 44-190 83-255 (274)
9 1te5_A Conserved hypothetical 99.9 1.1E-23 3.9E-28 194.7 5.5 174 1-188 1-252 (257)
10 1ea0_A Glutamate synthase [NAD 99.6 1.9E-15 6.4E-20 164.5 13.8 159 17-183 144-394 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.6 4.8E-15 1.6E-19 161.7 15.8 159 17-183 144-393 (1520)
12 2e18_A NH(3)-dependent NAD(+) 99.1 2.7E-11 9.3E-16 112.0 5.7 133 207-354 6-141 (257)
13 3bl5_A Queuosine biosynthesis 99.1 2.1E-10 7.2E-15 103.2 10.2 117 225-353 3-130 (219)
14 1xng_A NH(3)-dependent NAD(+) 99.1 9.6E-11 3.3E-15 108.9 6.8 131 207-354 9-144 (268)
15 1kqp_A NAD+ synthase, NH(3)-de 99.1 1.8E-10 6E-15 107.1 8.5 143 206-355 21-170 (271)
16 2pg3_A Queuosine biosynthesis 99.0 3.2E-09 1.1E-13 96.5 14.7 157 226-411 3-177 (232)
17 3k32_A Uncharacterized protein 99.0 1.1E-09 3.6E-14 97.5 9.5 109 226-349 7-115 (203)
18 3n05_A NH(3)-dependent NAD(+) 99.0 4.7E-10 1.6E-14 115.7 7.8 138 206-355 305-446 (590)
19 3fiu_A NH(3)-dependent NAD(+) 98.9 2.6E-09 8.8E-14 97.9 8.8 134 206-354 12-154 (249)
20 3p52_A NH(3)-dependent NAD(+) 98.9 1E-09 3.4E-14 100.5 5.0 129 208-353 11-144 (249)
21 1wxi_A NH(3)-dependent NAD(+) 98.8 4E-09 1.4E-13 98.0 7.2 143 208-354 24-172 (275)
22 2hma_A Probable tRNA (5-methyl 98.7 1.6E-08 5.5E-13 98.2 8.3 115 225-349 9-137 (376)
23 2dpl_A GMP synthetase, GMP syn 98.7 1.6E-08 5.6E-13 95.6 7.4 124 210-348 6-133 (308)
24 2nz2_A Argininosuccinate synth 98.7 5.8E-08 2E-12 95.0 11.6 110 225-345 5-121 (413)
25 1kor_A Argininosuccinate synth 98.7 6.6E-08 2.3E-12 94.4 11.7 110 227-346 2-118 (400)
26 1vl2_A Argininosuccinate synth 98.7 3.7E-08 1.3E-12 95.8 9.7 109 226-345 15-130 (421)
27 1wy5_A TILS, hypothetical UPF0 98.7 5.1E-08 1.8E-12 92.7 10.1 125 208-347 5-137 (317)
28 2der_A TRNA-specific 2-thiouri 98.6 7.8E-08 2.7E-12 93.3 9.1 113 225-348 17-145 (380)
29 1k92_A Argininosuccinate synth 98.5 1.6E-07 5.3E-12 92.4 8.8 114 220-344 5-130 (455)
30 3q4g_A NH(3)-dependent NAD(+) 98.5 1.3E-07 4.6E-12 87.5 6.4 142 208-354 25-181 (279)
31 3a2k_A TRNA(Ile)-lysidine synt 98.4 8.7E-07 3E-11 88.6 9.1 112 222-347 15-131 (464)
32 1gpm_A GMP synthetase, XMP ami 98.3 9.1E-07 3.1E-11 89.7 7.2 123 208-345 211-338 (525)
33 3tqi_A GMP synthase [glutamine 98.3 1.3E-06 4.5E-11 88.6 8.2 122 210-349 216-344 (527)
34 3dpi_A NAD+ synthetase; ssgcid 98.2 6.5E-07 2.2E-11 82.9 4.6 129 216-353 35-180 (285)
35 2ywb_A GMP synthase [glutamine 98.2 2.2E-06 7.7E-11 86.4 8.6 118 214-347 199-320 (503)
36 1sur_A PAPS reductase; assimil 98.2 5.7E-06 1.9E-10 73.9 10.0 109 226-348 45-160 (215)
37 2c5s_A THII, probable thiamine 98.2 4E-06 1.4E-10 82.4 9.0 108 225-348 187-303 (413)
38 3ilv_A Glutamine-dependent NAD 98.2 4.2E-06 1.4E-10 86.7 9.6 144 207-353 283-470 (634)
39 2vxo_A GMP synthase [glutamine 98.1 2E-05 6.7E-10 82.2 13.5 79 208-295 224-304 (697)
40 3sdb_A Glutamine-dependent NAD 98.1 2.7E-06 9.3E-11 88.7 6.4 140 208-353 342-492 (680)
41 1ni5_A Putative cell cycle pro 98.0 1.1E-05 3.9E-10 79.7 8.4 108 221-347 9-120 (433)
42 3uow_A GMP synthetase; structu 98.0 1.1E-05 3.8E-10 82.2 8.4 126 208-348 239-373 (556)
43 4f4h_A Glutamine dependent NAD 97.9 4.1E-05 1.4E-09 78.2 11.5 137 207-354 280-425 (565)
44 3rjz_A N-type ATP pyrophosphat 97.9 5.5E-05 1.9E-09 68.0 10.4 60 227-296 6-73 (237)
45 2o8v_A Phosphoadenosine phosph 97.9 1.1E-05 3.7E-10 73.9 4.9 109 226-348 46-161 (252)
46 1zun_A Sulfate adenylyltransfe 97.8 4.2E-05 1.4E-09 72.5 8.3 112 226-349 47-160 (325)
47 2oq2_A Phosphoadenosine phosph 97.7 5.1E-05 1.7E-09 69.8 6.6 112 227-348 43-164 (261)
48 1vbk_A Hypothetical protein PH 97.6 0.00011 3.8E-09 69.0 6.9 80 226-347 180-267 (307)
49 2goy_A Adenosine phosphosulfat 96.7 0.0037 1.3E-07 57.7 7.8 59 226-295 55-115 (275)
50 2wsi_A FAD synthetase; transfe 96.3 0.0087 3E-07 56.0 7.7 104 226-350 54-172 (306)
51 3fwk_A FMN adenylyltransferase 93.2 0.078 2.7E-06 49.1 4.7 66 226-291 59-138 (308)
52 2orv_A Thymidine kinase; TP4A 26.3 2.7E+02 0.0091 24.3 8.3 31 324-354 105-138 (234)
53 1ofd_A Ferredoxin-dependent gl 23.4 64 0.0022 36.3 4.5 31 2-32 1-32 (1520)
54 1ea0_A Glutamate synthase [NAD 20.3 77 0.0026 35.6 4.3 32 2-33 1-33 (1479)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=1.6e-86 Score=679.93 Aligned_cols=416 Identities=56% Similarity=0.974 Sum_probs=368.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeCCeEEEEeeeeecCCCCCCCCeeecCCcEEEEEeeEEcCh
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n~ 81 (420)
|||+|+++.+.........+.+|+..|+|||||++|++..+++++||+||+|+|...+.||+.+.+++++++|||+|||+
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~ 80 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80 (553)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTH
T ss_pred CEEEEEEcCCCcchhHHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECH
Confidence 99999998654422335667899999999999999999999999999999999977789999988889999999999999
Q ss_pred HHHHHHh-cCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeC
Q 014715 82 EALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (420)
Q Consensus 82 ~~L~~~l-~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (420)
.+|+++| ..+.|++.||+|+|+++|++||.+++++++|+|||++||.++++++++||++|+|||||+...++.++||||
T Consensus 81 ~eLr~~L~~~~~f~s~sDtEvil~l~~~~g~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe 160 (553)
T 1ct9_A 81 QALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASE 160 (553)
T ss_dssp HHHHHHHTTTSCCCSCCTTHHHHHHHHHHTTTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESS
T ss_pred HHHHHHHhccCccCCCCcHHHHHHHHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeec
Confidence 9999999 337889999999999999999999999999999999999988999999999999999999843578999999
Q ss_pred ccccccccccceeeCCCcEEEccCCeeEEeeCCCCCCC-CCCCCCCcHHHHHHHHHHHhhhhcccccceeEEecCCcchH
Q 014715 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (420)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs 239 (420)
+++|...+++|++||||+++.+..++.++||++.|... ..++.++.+++++++|.+||++|+.++.|+|++||||+|||
T Consensus 161 ~~al~~~~~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS 240 (553)
T 1ct9_A 161 MKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSS 240 (553)
T ss_dssp GGGTTTTCSEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHH
T ss_pred hHHHHhhcCCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHH
Confidence 99999989999999999999887777899999876542 23355678899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccc----cccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHHHHHhhccCCc
Q 014715 240 LVASITARHLAGTKAA----RQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV 315 (420)
Q Consensus 240 ~iaa~~~~~~~~~~~~----~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (420)
+|++++++...+.... ..+.+++++||+++++++|..+|+++|+++|++|+++.++.+++.+.+++++++.+++++
T Consensus 241 ~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~ 320 (553)
T 1ct9_A 241 IISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDV 320 (553)
T ss_dssp HHHHHHHHHC----------------CEEEEEESTTCHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHhhccccccccccccccCceeEEEecCCCCcHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCc
Confidence 9999999876421000 000023899999999889999999999999999999999999999999999998888765
Q ss_pred ccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhHHHHHHHHHhhhcccchhhHHHhhcCcccc
Q 014715 316 TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEAR 395 (420)
Q Consensus 316 ~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r 395 (420)
+.++..+++|++++.+++.|++|+|||+||||+||||++|+..+....+.+++.+++.+++.++++|.||++|++|+|+|
T Consensus 321 ~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElfgGY~~~~~~~~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~R 400 (553)
T 1ct9_A 321 TTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEAR 400 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHTCSGGGGGCCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEECCCchhcccCcHhHhhCcchhhHHHHHHHHHHHHhhhcchhhhhHHhhcCceeE
Confidence 45555678899999999999999999999999999999999888888888898899999999999999999999999999
Q ss_pred cCcCCHHHHHHHHcCCcccccc
Q 014715 396 VPFLDKDFINVAMAIDPEWKMV 417 (420)
Q Consensus 396 ~PfLd~~lv~~a~~lP~~~k~~ 417 (420)
+||||++||+||++||+++|+.
T Consensus 401 ~PfLD~~lve~a~~lP~~~k~~ 422 (553)
T 1ct9_A 401 VPFLDKKFLDVAMRINPQDKMC 422 (553)
T ss_dssp CGGGCHHHHHHHHHSCGGGTCC
T ss_pred CCcCCHHHHHHHhcCCHHHhcc
Confidence 9999999999999999999974
No 2
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=100.00 E-value=1.5e-69 Score=549.13 Aligned_cols=354 Identities=22% Similarity=0.348 Sum_probs=308.1
Q ss_pred CeEEEEeeeeecCCCCCCCCeeecCCcEEEEEeeEEcChH---HHHHHhcCCCccCCChHHHHHHHHHHHhHHHhhhccC
Q 014715 43 DFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE---ALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDG 119 (420)
Q Consensus 43 ~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n~~---~L~~~l~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G 119 (420)
.+++||+||+|.+ ..+.||+.+.+++++++ |+|||+. +|+++|.+ .|.+.||+|+|+++|++||.+++++++|
T Consensus 27 ~~~igh~R~~t~~-~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g-~f~s~sDtEvil~l~~~~g~~~l~~l~G 102 (503)
T 1q15_A 27 GEALSNGYLFIEQ-NGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEG-EAYLANDAELLALLFTRLGANALALAEG 102 (503)
T ss_dssp EEEETTEEEEEET-TCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCG-GGGGCCHHHHHHHHHHHHCGGGGGGCCS
T ss_pred ceeEeeeeEEEcC-CCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhC-CCCCCChHHHHHHHHHHHHHHHHHHcCE
Confidence 5689999999975 57899999888888888 9999999 99999976 8899999999999999999999999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcE-----------------EEEeeCccccccc--------cccceee
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGS-----------------IWISSELKGLNDD--------CEHFEAF 174 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~-----------------~~faSe~~~l~~~--------~~~i~~l 174 (420)
+|||++||+.++ ++++||++|+|||||+.. ++. ++||||+++|... +++|++|
T Consensus 103 ~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~~~v~~l 180 (503)
T 1q15_A 103 DFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQRL 180 (503)
T ss_dssp SEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBTTEEEC
T ss_pred EEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCcccCCeEEE
Confidence 999999999877 999999999999999975 666 9999999999886 8999999
Q ss_pred CCCcEEEccCCe------eEEeeCCCCCCC-CCCCCCCcHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHH
Q 014715 175 PPGHLYSSKSGG------LKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITAR 247 (420)
Q Consensus 175 ~pG~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~ 247 (420)
+||+++.++.++ .++||++..... ...+.++.+++++++|.+||++|+.++.|++++||||+||++|++++++
T Consensus 181 ~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~ 260 (503)
T 1q15_A 181 KPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASR 260 (503)
T ss_dssp CSSEEEEEEECTTCCEEEEEEESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCcccccceeeecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHH
Confidence 999998876432 678998765321 1223345678999999999999999999999999999999999999887
Q ss_pred HhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHH
Q 014715 248 HLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLM 327 (420)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (420)
.. .++.+||+++++.+|..+|+++|+++|++|+++.++++++.+.+++.+++.+.|++...++.+++|.+
T Consensus 261 ~~----------~~~~~~t~~~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l 330 (503)
T 1q15_A 261 HF----------KKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNV 330 (503)
T ss_dssp TC----------SEEEEEEEEETTBCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred hC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHHH
Confidence 54 47999999999889999999999999999999999999888999999998887665445566788888
Q ss_pred HHHHHhcCCEEEEeccCCcccccccccc-cCCCChhHHhHHHHHHHHHhhhcccchhhHHHhhcCcccccCcCCHHHHHH
Q 014715 328 SRKIKSLGVKMVISGEGSDEIFGGYLYF-HKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINV 406 (420)
Q Consensus 328 ~~~a~~~g~~v~ltG~GgDelf~Gy~~~-~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r~PfLd~~lv~~ 406 (420)
++.| +.|++|++||+||||+|+||.+| ...+....+..|...++. ++|.|.||++|++|+|+|+||||++||+|
T Consensus 331 ~~~a-~~~~~VvltG~GaDElf~GY~~~~~~~~~~~~l~~e~~~r~~----~~L~r~Dr~~ma~glE~R~PfLD~~lve~ 405 (503)
T 1q15_A 331 YRQA-QGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTR----WTGEFATHGASCYGIDIRHPFWSHSLISL 405 (503)
T ss_dssp HHHH-BTTBSEEECCTTHHHHHTTTSCTTCCCSCHHHHHHHHHHHHH----HHSTTCCHHHHHTTCEEECTTCCHHHHHH
T ss_pred HHHH-HCCCCEEEeCCChhhhccChHHHHHhcCCHHHHhHHHHHHHH----HhhhhhhHHHHHcCCCEECCCCCHHHHHH
Confidence 8888 57899999999999999999988 445555555555544443 57899999999999999999999999999
Q ss_pred HHcCCcccccc
Q 014715 407 AMAIDPEWKMV 417 (420)
Q Consensus 407 a~~lP~~~k~~ 417 (420)
|++||+++|+.
T Consensus 406 a~~lP~~~k~~ 416 (503)
T 1q15_A 406 CHALHPDYKIF 416 (503)
T ss_dssp HHTBCGGGTEE
T ss_pred HHhCCHHHHhC
Confidence 99999999974
No 3
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=100.00 E-value=6.2e-69 Score=545.29 Aligned_cols=334 Identities=22% Similarity=0.316 Sum_probs=291.8
Q ss_pred CCCeeecC----CcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHHhHHHhhhccCceEEEEEECCCCEEEE
Q 014715 60 DQPLYNED----KKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIV 135 (420)
Q Consensus 60 ~qP~~~~~----~~~~~~~nG~i~n~~~L~~~l~~~~~~~~~d~e~l~~~~~~~g~~~~~~l~G~fa~v~~d~~~~~l~~ 135 (420)
.||+...+ ++++++|||||||+.+|+++|. +.|++.||||+|+++|++||.+++++++|+|||++||.+ ++++
T Consensus 57 ~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~-~~f~t~sDtEvil~l~~~~g~~~~~~l~G~fA~~i~d~~--~l~~ 133 (513)
T 1jgt_A 57 APDRAVARSLTGAPTTAVLAGEIYNRDELLSVLP-AGPAPEGDAELVLRLLERYDLHAFRLVNGRFATVVRTGD--RVLL 133 (513)
T ss_dssp CGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSC-SSCCCSSHHHHHHHHHHHHGGGGGGTCCEEEEEEEEETT--EEEE
T ss_pred CCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhC-CCCCCCCHHHHHHHHHHHHhHHhHhhcCeeEEEEEEECC--EEEE
Confidence 68887543 7899999999999999999995 889999999999999999999999999999999999984 5999
Q ss_pred EEcCCCCccEEEEEecCcEEEEeeCcccccccc----------------ccceeeCCCcEEEcc--CCe--eEEeeCCCC
Q 014715 136 ARDAIGITSLYIGWGLDGSIWISSELKGLNDDC----------------EHFEAFPPGHLYSSK--SGG--LKRWYNPTW 195 (420)
Q Consensus 136 ~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~----------------~~i~~l~pG~~~~~~--~~~--~~~~~~~~~ 195 (420)
+||++|+|||||+.. ++.++||||+++|.... ++|++|+||+++.++ .++ .++||++..
T Consensus 134 aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~l~i~~~~g~~~~~~yw~~~~ 212 (513)
T 1jgt_A 134 ATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHRTWTPGL 212 (513)
T ss_dssp EECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEEEEEETTTTEEEEEECCCCCC
T ss_pred EECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcEEEEEcCCCCEEEEeecCCcc
Confidence 999999999999986 78899999999998764 899999999998886 554 578998765
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcH
Q 014715 196 YSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDL 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~ 275 (420)
.+ ...+.++.+++++++|.++|++|+.++.+++++||||+|||+|++++++.. .++.+||+++++.+|.
T Consensus 213 ~~-~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~----------~~v~tfti~~~~~~E~ 281 (513)
T 1jgt_A 213 SR-RILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA----------GELDTVSMGTDTSNEF 281 (513)
T ss_dssp SC-BCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH----------SSCEEEEEECSSCCCH
T ss_pred cc-cCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC----------CCceEEEcCCCCCCHH
Confidence 32 222334567899999999999999999999999999999999999998875 4799999999989999
Q ss_pred HHHHHHHHHhCCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccc
Q 014715 276 KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (420)
Q Consensus 276 ~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~ 355 (420)
.+|+++|+++|++|+++.++++++.+.+++.+++.+.+++...++.+++|++++.+ +.|++|++||+||||+|+||.+|
T Consensus 282 ~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~GaDElfgGY~~~ 360 (513)
T 1jgt_A 282 REARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPLGGMHRE 360 (513)
T ss_dssp HHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHHTTTCCC
T ss_pred HHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcCCCEEEeCCChhhcccCcccc
Confidence 99999999999999999999988889999999888876544445567788888877 67999999999999999999987
Q ss_pred cCCCChhHHhHHHHHHHHHhhhcccchhhHHHh----hcCcccccCcCCHHHHHHHHcCCcccccc
Q 014715 356 HKAPNKEEFHRETCHKIKALHQYDCLRANKSTS----AWGLEARVPFLDKDFINVAMAIDPEWKMV 417 (420)
Q Consensus 356 ~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~----~~gie~r~PfLd~~lv~~a~~lP~~~k~~ 417 (420)
+....+..+ .+++++.++++ ||++| ++|+|+|+||||++||+||++||+++|+.
T Consensus 361 ---~~~~~l~~e---~l~~l~~~~ll--Dr~sm~la~a~glE~R~PfLD~~lve~a~~lP~~~k~~ 418 (513)
T 1jgt_A 361 ---DRLPALDTV---LAHDMATFDGL--NEMSPVLSTLAGHWTTHPYWDREVLDLLVSLEAGLKRR 418 (513)
T ss_dssp ---SCCHHHHHH---HHHHHHHCTTC--CTTCTHHHHTTTCEEECGGGSHHHHHHHHHBCHHHHEE
T ss_pred ---CChhhcCHH---HHHHHhhccch--hhhhhhhhhhcCcceECCCCCHHHHHHHHcCCHHHhcC
Confidence 333445555 35566677877 99999 99999999999999999999999999974
No 4
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=1.3e-36 Score=304.95 Aligned_cols=231 Identities=24% Similarity=0.377 Sum_probs=183.3
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe---------------------------CCeEEEEeeeeec
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (420)
|||+|+++.+ . ....+..|+.+|+|||||+.|++.. +++++||+|++|.
T Consensus 1 CGI~G~~~~~--~--~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~ 76 (459)
T 1ao0_A 1 CGVFGIWGHE--E--APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATA 76 (459)
T ss_dssp CEEEEEESCT--B--HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC-
T ss_pred CEEEEEECCc--c--hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCC
Confidence 9999999754 1 2445678999999999999999986 3579999999999
Q ss_pred CCC--CCCCCeee---cCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHh--------HHHhhhccC
Q 014715 55 DPA--SGDQPLYN---EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (420)
Q Consensus 55 ~~~--~~~qP~~~---~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g--------~~~~~~l~G 119 (420)
|.. .+.||+.. .+++++++|||+|||+.+|+++| .|+.|.+.||+|+++++|.+|| .+++++++|
T Consensus 77 g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G 156 (459)
T 1ao0_A 77 GGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKG 156 (459)
T ss_dssp ---CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCE
T ss_pred CCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcc
Confidence 864 58999986 56889999999999999999999 6889999999999999999987 789999999
Q ss_pred ceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc-cccceeeCCCcEEEccCCe--eEEeeCCCCC
Q 014715 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG--LKRWYNPTWY 196 (420)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~--~~~~~~~~~~ 196 (420)
+|||++||. ++++++||++|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.++ ..+||++...
T Consensus 157 ~fa~~i~d~--~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~~~~~ 233 (459)
T 1ao0_A 157 AYAFLIMTE--TEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSMNINR 233 (459)
T ss_dssp EEEEEEECS--SEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCSSCCC
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCCCccc
Confidence 999999995 89999999999999999986 6789999999999875 6789999999999887765 4578865310
Q ss_pred --------CCCCCC---CCCcHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHH
Q 014715 197 --------SEAIPS---TPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVA 242 (420)
Q Consensus 197 --------~~~~~~---~~~~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~ia 242 (420)
....|. ....+.+.+..+.+.+.+.+..... .+.+-.||....
T Consensus 234 ~~c~feyiyfarp~s~~~~~~v~~~r~~lg~~La~~~~~~~D---vVV~VP~~g~~~ 287 (459)
T 1ao0_A 234 SICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESAVEAD---VVTGVPDSSISA 287 (459)
T ss_dssp CEEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHCCCCS---EEECCTTTTHHH
T ss_pred cccceeeeeccCCcchhccHhHHHHHHHHHHHHHHhcccCCc---EEEEECCcHHHH
Confidence 111222 3345677888888888875532111 233445555543
No 5
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=100.00 E-value=1.2e-35 Score=273.45 Aligned_cols=179 Identities=32% Similarity=0.445 Sum_probs=158.0
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceE-Ee---------------------------CCeEEEEeeeee
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QH---------------------------GDFYLAHQRLAI 53 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~-~~---------------------------~~~~l~h~rl~~ 53 (420)
|||+|+++.+.. ...+..|+..|+|||||+.|++ .. ..+++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at 76 (240)
T 1xff_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (240)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCS
T ss_pred CcEEEEEcCcch----HHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccC
Confidence 999999986532 3457889999999999999999 63 468999999999
Q ss_pred cCC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHhH----------HHhhhccC
Q 014715 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDG 119 (420)
Q Consensus 54 ~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~g~----------~~~~~l~G 119 (420)
.|. ..+.||+.+ ++++++|||+|||+.+|+++| .++.|.+.||+|+++++|++++. +++++++|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G 154 (240)
T 1xff_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (240)
T ss_dssp SSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCE
T ss_pred CCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 985 358999987 789999999999999999999 68899999999999999999864 79999999
Q ss_pred ceEEEEEECC-CCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccccccceeeCCCcEEEccCCeeEEe
Q 014715 120 MFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRW 190 (420)
Q Consensus 120 ~fa~v~~d~~-~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~ 190 (420)
+|||++||.. .++++++||+ |||||+.. ++.++||||+++|.....++..|+||+++.++.++++.+
T Consensus 155 ~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pG~~~~i~~~~~~~~ 222 (240)
T 1xff_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIF 222 (240)
T ss_dssp EEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSEEEECCTTCEEEECSSCEEEE
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCeEEEECCCEEEEEECCeEEEE
Confidence 9999999975 5899999998 99999985 678999999999988888899999999999887665543
No 6
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=100.00 E-value=8.4e-32 Score=272.66 Aligned_cols=179 Identities=22% Similarity=0.386 Sum_probs=152.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEeC----------------------------CeEEEEeeeee
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLAI 53 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~~ 53 (420)
|||+|+++.+.. ...+..|+.+|+|||||+.|++..+ ++++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT 76 (504)
T 1ecf_A 1 CGIVGIAGVMPV----NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPT 76 (504)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCB
T ss_pred CEEEEEEcChhH----HHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCc
Confidence 999999975422 3457789999999999999999763 47999999999
Q ss_pred cCCC--CCCCCeeec-CCcEEEEEeeEEcChHHHHHHh--c-CCCccCCChHHHHHHHHHHH----hH------------
Q 014715 54 IDPA--SGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--T-NHKFRTGSDCDVIAHLYEEY----GE------------ 111 (420)
Q Consensus 54 ~~~~--~~~qP~~~~-~~~~~~~~nG~i~n~~~L~~~l--~-~~~~~~~~d~e~l~~~~~~~----g~------------ 111 (420)
.|.. .+.||+... .++++++|||+|+|+.+|+++| . +..|.+.||+|+|+++|.++ |.
T Consensus 77 ~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~ 156 (504)
T 1ecf_A 77 AGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAI 156 (504)
T ss_dssp TTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHH
T ss_pred CCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 9963 589999854 3569999999999999999999 2 47799999999999999886 22
Q ss_pred -HHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEec--C--cEEEEeeCccccccc-cccceeeCCCcEEEccCC
Q 014715 112 -NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL--D--GSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSG 185 (420)
Q Consensus 112 -~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~--~--~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~ 185 (420)
+++++++|+||+++|+.. ++++++||++|+|||||+... + +.++||||.++|... ++.|+.|+||+++.++.+
T Consensus 157 ~~~~~~l~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~~ 235 (504)
T 1ecf_A 157 AATNRLIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEE 235 (504)
T ss_dssp HHHHHHCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEETT
T ss_pred HHhhhhcCccceEEEEEcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeCC
Confidence 579999999999999754 579999999999999999852 3 479999999999775 567999999999888644
No 7
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.98 E-value=1.3e-31 Score=277.94 Aligned_cols=176 Identities=33% Similarity=0.464 Sum_probs=156.6
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEe----------------------------CCeEEEEeeeee
Q 014715 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------GDFYLAHQRLAI 53 (420)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~----------------------------~~~~l~h~rl~~ 53 (420)
|||+|+++.+.. ...+..|++.|+|||||+.|++.. +.+++||+||+|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at 76 (608)
T 2bpl_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (608)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCC
T ss_pred CeEEEEEcCCch----HHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCC
Confidence 999999976532 345789999999999999999976 357899999999
Q ss_pred cCC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH---hH-------HHhhhccC
Q 014715 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---GE-------NFVDMLDG 119 (420)
Q Consensus 54 ~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~~~~~~~~d~e~l~~~~~~~---g~-------~~~~~l~G 119 (420)
.|. ..+.||+.+ ++++++|||+|||+.+|+++| .|+.|.+.||||+++++|++| |. +++++++|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G 154 (608)
T 2bpl_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (608)
T ss_dssp SSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCS
T ss_pred CCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcC
Confidence 985 358999987 789999999999999999999 689999999999999999987 73 68999999
Q ss_pred ceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccccccceeeCCCcEEEccCCee
Q 014715 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (420)
Q Consensus 120 ~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 187 (420)
+|||++||..+ ++++++||+ +||||+.. ++.++||||+++|......+..|+||+++.++.+++
T Consensus 155 ~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~~~~l~~G~i~~i~~~~~ 219 (608)
T 2bpl_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSV 219 (608)
T ss_dssp SEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCEEEECCTTCEEEECSSCE
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCCeEEEECCCeEEEEECCeE
Confidence 99999999987 899999998 99999985 678999999999998888899999999988775543
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.94 E-value=9.5e-27 Score=216.75 Aligned_cols=141 Identities=19% Similarity=0.249 Sum_probs=109.1
Q ss_pred eEEEEeeeeecCC--CCCCCCeeecCCcEEEEEeeEEcChHHHHHHh--cC--CCc---cCCChHHHHHHHHHHHhH---
Q 014715 44 FYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN--HKF---RTGSDCDVIAHLYEEYGE--- 111 (420)
Q Consensus 44 ~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~~L~~~l--~~--~~~---~~~~d~e~l~~~~~~~g~--- 111 (420)
+++||+|++|.|. ..++||+.. ++++++|||+|+|+.+|+++| .+ +.| .+.||+|+|++++.++|.
T Consensus 83 ~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~~ 160 (274)
T 3mdn_A 83 LFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEHD 160 (274)
T ss_dssp EEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTTC
T ss_pred EEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcCC
Confidence 6799999999985 469999987 679999999999999999999 34 334 689999999999988774
Q ss_pred ------HHhhhccCc-----------eEEEEEECCCCEEEEEEcC-CCCccEEEEEecC--cEEEEeeCccccccccccc
Q 014715 112 ------NFVDMLDGM-----------FSFVLLDTRDNSFIVARDA-IGITSLYIGWGLD--GSIWISSELKGLNDDCEHF 171 (420)
Q Consensus 112 ------~~~~~l~G~-----------fa~v~~d~~~~~l~~~rD~-~G~~pLyy~~~~~--~~~~faSe~~~l~~~~~~i 171 (420)
+++++++|+ |+++++|+ ++++++||+ +|.+||+|+...+ +.++||||. |......+
T Consensus 161 ~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~~~ 236 (274)
T 3mdn_A 161 PHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEGDW 236 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCSCC
T ss_pred HHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCceE
Confidence 689999998 99999987 899999998 9999965555433 789999998 43334679
Q ss_pred eeeCCCcEEEccCCeeEEe
Q 014715 172 EAFPPGHLYSSKSGGLKRW 190 (420)
Q Consensus 172 ~~l~pG~~~~~~~~~~~~~ 190 (420)
+.|+||+++.++.++++.+
T Consensus 237 ~~v~pGeiv~i~~~~v~~~ 255 (274)
T 3mdn_A 237 TELRPGRMLTIGAEGAAER 255 (274)
T ss_dssp EECCSSEEEEEETTEEEEE
T ss_pred EEECcCEEEEEeCCeEEEE
Confidence 9999999999887776544
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.88 E-value=1.1e-23 Score=194.73 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=134.2
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhcccCC------CCCCceEEeC-----------------------------CeE
Q 014715 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRG------PDWSGLYQHG-----------------------------DFY 45 (420)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RG------pd~~g~~~~~-----------------------------~~~ 45 (420)
||||+|+++... .. +...+..|+||| +|+.|+...+ .++
T Consensus 1 MCgi~G~~~~~~-~~-----~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~~~~~~k~~g~v~~~~~~~~l~~~~l~g~~~ 74 (257)
T 1te5_A 1 MCELLGMSANVP-TD-----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETV 74 (257)
T ss_dssp -CCEEEEEEEEE-EE-----CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEE
T ss_pred CCeEEEEEcCCC-cc-----HHHHHHHHHhccCCCCCCCCeEEEEEEeCCceEEEECCCccccchHHHHHhhCCccccEE
Confidence 999999997432 11 122567899999 7999987642 267
Q ss_pred EEEeeeeecCCC--CCCCCeeec--CCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHHh-----------
Q 014715 46 LAHQRLAIIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG----------- 110 (420)
Q Consensus 46 l~h~rl~~~~~~--~~~qP~~~~--~~~~~~~~nG~i~n~~~L~~~l~~~~~~~~~d~e~l~~~~~~~g----------- 110 (420)
+||+|++|.|.. .++||+... .++++++|||.|.|+.+ +.+ ++.|.+.||+|++++++.+..
T Consensus 75 IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~--~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~ 151 (257)
T 1te5_A 75 IGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPG--FYRPVGETDSEAAFCDLLNRVRRAFPEPVPVE 151 (257)
T ss_dssp EEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCC--SSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred EEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhc--cCCcccCCHHHHHHHHHHHHHHHhcCCCchHH
Confidence 999999999863 489999864 56799999999999998 654 345899999999999997532
Q ss_pred --HHHhhhcc------CceEEEEEECCCCEEEEEEc----------CCCCccEEE-------EE---ecCcEEEEeeCcc
Q 014715 111 --ENFVDMLD------GMFSFVLLDTRDNSFIVARD----------AIGITSLYI-------GW---GLDGSIWISSELK 162 (420)
Q Consensus 111 --~~~~~~l~------G~fa~v~~d~~~~~l~~~rD----------~~G~~pLyy-------~~---~~~~~~~faSe~~ 162 (420)
.+++.++. |.|++++.|. +.++++|| |+|.+||.. .. ..+..++||||.
T Consensus 152 a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~- 228 (257)
T 1te5_A 152 VLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP- 228 (257)
T ss_dssp HHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC-
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc-
Confidence 13555555 9999999998 89999999 999999965 20 113468999995
Q ss_pred ccccccccceeeCCCcEEEccCCeeE
Q 014715 163 GLNDDCEHFEAFPPGHLYSSKSGGLK 188 (420)
Q Consensus 163 ~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (420)
|. ..+.++.|+||+++.++.+.+.
T Consensus 229 -l~-~~~~wr~v~pGe~v~i~~~~~~ 252 (257)
T 1te5_A 229 -LT-DNENWTLQQSGEWVLWWGGEVL 252 (257)
T ss_dssp -SS-SSSSCEEECTTCEEEEETTEEE
T ss_pred -cC-CCCCeeEeCCCEEEEEECCEEE
Confidence 43 3467999999999998877654
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.62 E-value=1.9e-15 Score=164.52 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcccCCCC----CCceEEeC-----------------------------CeEEEEeeeeecCCC--CCCC
Q 014715 17 KRVRVLELSRRLKHRGPD----WSGLYQHG-----------------------------DFYLAHQRLAIIDPA--SGDQ 61 (420)
Q Consensus 17 ~~~~~~~~~~~l~~RGpd----~~g~~~~~-----------------------------~~~l~h~rl~~~~~~--~~~q 61 (420)
....+......++||+.+ +.++...+ .++++|+|++|.+.. .++|
T Consensus 144 ~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~dL~d~~~~g~~aigH~RySTnt~p~w~~AQ 223 (1479)
T 1ea0_A 144 FELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQ 223 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGGGSTTCCBSEEEEEECCCSCSCCCSTTSS
T ss_pred HHHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhhhcccccceeEEEeeecccCCCCCCcccCC
Confidence 455667778889999953 34444322 488999999999864 4789
Q ss_pred CeeecCCcEEEEEeeEEcChHHHHHHh-------------------cCCCccCCChHHHH---HHHHHHHh---------
Q 014715 62 PLYNEDKKIVVTVNGEIYNHEALRERL-------------------TNHKFRTGSDCDVI---AHLYEEYG--------- 110 (420)
Q Consensus 62 P~~~~~~~~~~~~nG~i~n~~~L~~~l-------------------~~~~~~~~~d~e~l---~~~~~~~g--------- 110 (420)
||. +++|||||.|...+++.+ ....+.+.||+|++ ++++.+.|
T Consensus 224 Pf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~~l~~A~~~ 297 (1479)
T 1ea0_A 224 PFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMM 297 (1479)
T ss_dssp CCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 996 389999999999998653 11337899999999 44443333
Q ss_pred -----------------------HHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCccccccc
Q 014715 111 -----------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (420)
Q Consensus 111 -----------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~ 167 (420)
..+++.++|+|++++.|. +.++++|||.|.|||.|+...++.+++|||..+|...
T Consensus 298 liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~ 375 (1479)
T 1ea0_A 298 LVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKID 375 (1479)
T ss_dssp HSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCC
T ss_pred hCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCc
Confidence 134679999999999988 8999999999999999998766789999999999654
Q ss_pred cccc-e--eeCCCcEEEcc
Q 014715 168 CEHF-E--AFPPGHLYSSK 183 (420)
Q Consensus 168 ~~~i-~--~l~pG~~~~~~ 183 (420)
..++ + +|.||+++.++
T Consensus 376 ~a~~vrkg~l~PGemv~id 394 (1479)
T 1ea0_A 376 ETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp GGGEEEEEECCTTCEEEEE
T ss_pred chheeeccCCCCCeEEEEE
Confidence 3333 3 79999997765
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.61 E-value=4.8e-15 Score=161.70 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhcccCCCCCCceEEeC-----------------------------CeEEEEeeeeecCCC--CCCCCeee
Q 014715 17 KRVRVLELSRRLKHRGPDWSGLYQHG-----------------------------DFYLAHQRLAIIDPA--SGDQPLYN 65 (420)
Q Consensus 17 ~~~~~~~~~~~l~~RGpd~~g~~~~~-----------------------------~~~l~h~rl~~~~~~--~~~qP~~~ 65 (420)
....+......++||+.++.++...+ .++++|+|++|.+.. .++|||.
T Consensus 144 ~~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~- 222 (1520)
T 1ofd_A 144 LDRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR- 222 (1520)
T ss_dssp HHHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS-
T ss_pred HHHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh-
Confidence 45567778889999997655555432 488999999999865 3899996
Q ss_pred cCCcEEEEEeeEEcChHHHH------HH-----------h--cC-CCccCCChHHHHHHHHH---HHh------------
Q 014715 66 EDKKIVVTVNGEIYNHEALR------ER-----------L--TN-HKFRTGSDCDVIAHLYE---EYG------------ 110 (420)
Q Consensus 66 ~~~~~~~~~nG~i~n~~~L~------~~-----------l--~~-~~~~~~~d~e~l~~~~~---~~g------------ 110 (420)
+++|||||.|...++ .. | .+ ..+.+.||+|++.++++ +.|
T Consensus 223 -----~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~liP 297 (1520)
T 1ofd_A 223 -----LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVP 297 (1520)
T ss_dssp -----SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSC
T ss_pred -----eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhCc
Confidence 389999999988887 22 2 12 35789999999965444 434
Q ss_pred ----------------------HHHhhhccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCcEEEEeeCcccccccc
Q 014715 111 ----------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC 168 (420)
Q Consensus 111 ----------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~ 168 (420)
..+++.++|+|++++.|. +.+.++|||.|.|||.|+...++.+++|||..+|....
T Consensus 298 eaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~ 375 (1520)
T 1ofd_A 298 EAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPE 375 (1520)
T ss_dssp CCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCG
T ss_pred chhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcc
Confidence 123578999999999998 89999999999999999887567799999999996543
Q ss_pred cc-ce--eeCCCcEEEcc
Q 014715 169 EH-FE--AFPPGHLYSSK 183 (420)
Q Consensus 169 ~~-i~--~l~pG~~~~~~ 183 (420)
.+ ++ +|.||+++.++
T Consensus 376 a~~vrkg~l~PGemv~id 393 (1520)
T 1ofd_A 376 VDIVEKGRLAPGQMIAVD 393 (1520)
T ss_dssp GGEEEEEECCTTCEEEEE
T ss_pred hheeeccCCCCCeEEEEE
Confidence 33 33 79999997765
No 12
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.15 E-value=2.7e-11 Score=111.97 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhC
Q 014715 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG 286 (420)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg 286 (420)
.+++.+.+.+.+++. ...++.+.||||+||+++++++.+.... .++.++++.+..+.|...|+++|+.+|
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g~--------~~v~av~~~~~~~~~~~~a~~~a~~lg 75 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALGK--------EKVLGLIMPYFENKDVEDAKLVAEKLG 75 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCSSCSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEEeCCCCchHHHHHHHHHHHhC
Confidence 456666677777765 4568999999999999999999887621 368888887654478899999999999
Q ss_pred CCceEEEechhhhHHHHHHHHHhhccCCccc---ccchhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTT---IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
++|+++++++ ..+.+.+.+.. .+.... +...+.+..+.+.|.+.|+.++.||+. ||.+.||..
T Consensus 76 i~~~~i~i~~--~~~~~~~~l~~--~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~-~e~~~Gy~t 141 (257)
T 2e18_A 76 IGYKVINIKP--IVDSFVENLEL--NLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNR-SEFLTGYFT 141 (257)
T ss_dssp CEEEECCCHH--HHHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCH-HHHHHTCSC
T ss_pred CCEEEEEChH--HHHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCch-hHHhcCCee
Confidence 9998877653 22222222111 011000 111133456677788889999999985 667788843
No 13
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.12 E-value=2.1e-10 Score=103.24 Aligned_cols=117 Identities=20% Similarity=0.293 Sum_probs=73.9
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCCceEEEech-hhhH-
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTV-QDGI- 300 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~~~~~~~~~-~~~~- 300 (420)
..+++++||||+||++++.++.+.. .++.++++.+.. .+|.++|+++|+.+|++|+.+.++. .+..
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~~----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~ 72 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKEF----------EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLAP 72 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGST
T ss_pred CCCEEEEccCcHHHHHHHHHHHHcC----------CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhcc
Confidence 3579999999999999999998753 478888887643 3578899999999999999998764 2111
Q ss_pred -----HHHHHHHHhhccCCcccccchhHHH--HHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 301 -----DAIEEVIYHVETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 301 -----~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
+.+.........+.. ........| ++.+.|++.|+++++||+++|+. ++|+
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~-~~~~ 130 (219)
T 3bl5_A 73 NALTRNDIEIEVKDGELPST-FVPGRNLVFLSFASILAYQIGARHIITGVCETDF-SGYP 130 (219)
T ss_dssp GGGC--------------CC-CCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-----CCG
T ss_pred cccccccccccccccCCCCc-eeechHHHHHHHHHHHHHHcCCCEEEEecccccc-CCCC
Confidence 011110000011111 111112233 44677888999999999999995 5664
No 14
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.09 E-value=9.6e-11 Score=108.92 Aligned_cols=131 Identities=16% Similarity=0.102 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHH
Q 014715 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADY 284 (420)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~ 284 (420)
.+.+.+.|.+.+... ...++.+.||||+||+++++++.+..+ .++.++++.+.. ..|...|+++|+.
T Consensus 9 ~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~~~l~~~~~~---------~~v~av~~~~~~~~~~e~~~a~~~a~~ 77 (268)
T 1xng_A 9 IVYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVGVLCQKVFK---------ENAHALLMPSSVSMPENKTDALNLCEK 77 (268)
T ss_dssp HHHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEECCCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEccCcHHHHHHHHHHHHhCC---------CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 345555566655442 345799999999999999999988752 478899987653 3478899999999
Q ss_pred hCCCceEEEechhhhHHHHHHHHHhhccCCcccccc---hhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 285 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
+|++|+++++++ ..+.+.+. ..........+ .+.+..+.+.|++.|+.++.||+ .||.|.||..
T Consensus 78 lgi~~~~i~i~~--~~~~~~~~---~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~~Gy~t 144 (268)
T 1xng_A 78 FSIPYTEYSIAP--YDAIFSSH---FKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERMLGYGT 144 (268)
T ss_dssp HTCCEEECCCHH--HHHHHHHH---CTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHHHTCSC
T ss_pred cCCCEEEEeChH--HHHHHHHH---hhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHhcCccc
Confidence 999998877654 22222111 11100000111 12344567778888999988875 5888989853
No 15
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.09 E-value=1.8e-10 Score=107.09 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccC-CcceeEEeecCCCCcHHHHHHHHHH
Q 014715 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWG-TQLHSFCVGLEGSPDLKYAKEVADY 284 (420)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~d~~~A~~vA~~ 284 (420)
.++++.+.|.+.|+++.. ..+.+.||||+||+++++++++....-+. +.+ .++.++++.+....|...|+++|+.
T Consensus 21 ~i~~~~~~L~d~v~~~g~--~~vvvgLSGGvDSsv~a~La~~a~~~lg~--~~~~~~v~av~~~~~~~~d~~~A~~va~~ 96 (271)
T 1kqp_A 21 EIEDRVNFLKQYVKKTGA--KGFVLGISGGQDSTLAGRLAQLAVESIRE--EGGDAQFIAVRLPHGTQQDEDDAQLALKF 96 (271)
T ss_dssp HHHHHHHHHHHHHHHHTC--CEEEEECCSSHHHHHHHHHHHHHHHHHHH--TTCCCEEEEEECCSSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--CCEEEECCCCHHHHHHHHHHHHHHHHhcc--cCCCceEEEEEeCCCCCCCHHHHHHHHHh
Confidence 455677777777776532 35778899999999999998876521000 000 1466666654334578999999999
Q ss_pred hCC-CceEEEechhhhHHHHHHHHHhh-ccC-Ccccccc---hhHHHHHHHHHHhcCCEEEEeccCCcccccccccc
Q 014715 285 LGT-VHHEFHFTVQDGIDAIEEVIYHV-ETY-DVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (420)
Q Consensus 285 lg~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~ 355 (420)
+|+ +|+++++++ ..+.+.+.+... +.+ ......+ -+.+..++..|.+.|.. ++++.+.||++.||..+
T Consensus 97 lgi~~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~l-vl~tgn~~E~~~Gy~t~ 170 (271)
T 1kqp_A 97 IKPDKSWKFDIKS--TVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLL-VLGTDHAAEAVTGFFTK 170 (271)
T ss_dssp HCCSEEEECCCHH--HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCE-EBCCCCHHHHTTTCSCT
T ss_pred cCCCeEEEeccHH--HHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCCE-EEECccHHHhccCCccc
Confidence 999 888887753 234444433322 211 1111111 12244555667777765 55555679999999643
No 16
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.04 E-value=3.2e-09 Score=96.49 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=95.3
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC--CcHHHHHHHHHHhCCC-ceEEEech-hhhHH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTV-HHEFHFTV-QDGID 301 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~vA~~lg~~-~~~~~~~~-~~~~~ 301 (420)
.++.+++|||+||+++++++.+.. .++.++++.+... .|.+.|+++|+.+|++ |++++++. +++..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----------~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~ 72 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELAT 72 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSH
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----------CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhh
Confidence 368899999999999999988764 4678888766543 5788999999999999 99988762 22211
Q ss_pred -HHHHH---H----Hhhc-cCCcccccchhHH--HHHHHHHHhcCCEEEEeccCCcccccccccccCCCChhHHhHHHHH
Q 014715 302 -AIEEV---I----YHVE-TYDVTTIRASTPM--FLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCH 370 (420)
Q Consensus 302 -~~~~~---~----~~~~-~~~~~~~~~~~~~--~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~~~~~~~~~~~~e~~~ 370 (420)
.+.+. + ...+ .+. +........ .++.+.|.+.|++++++|+.+|+.. +|+.. +. +...
T Consensus 73 ~~l~~~~~~v~~~~~~~~~~~~-~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~-~~~~~-----r~----~~~~ 141 (232)
T 2pg3_A 73 SSLTRDSIPVPDYDANAQGIPN-TFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFS-GYPDC-----RD----EFVK 141 (232)
T ss_dssp HHHHHTTCCCCC---------C-CCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSS-CCGGG-----SH----HHHH
T ss_pred hhcccccccccccccccCCCCC-CeEechHHHHHHHHHHHHHHcCcCEEEEccCccccC-CCCCC-----CH----HHHH
Confidence 11110 0 0001 111 111111112 2236677888999999999999975 45431 11 1222
Q ss_pred HHHHhhhcccchhhHHHhhcCcccccCcCC---HHHHHHHHcCC
Q 014715 371 KIKALHQYDCLRANKSTSAWGLEARVPFLD---KDFINVAMAID 411 (420)
Q Consensus 371 ~~~~l~~~~l~r~dr~~~~~gie~r~PfLd---~~lv~~a~~lP 411 (420)
.++.+.. .++..++.+..|+++ .++++++..+-
T Consensus 142 ~~~~~~~--------~~~~~~~~i~~PL~~~~K~ei~~~a~~~g 177 (232)
T 2pg3_A 142 ALNQAIV--------LGIARDIRFETPLMWLNKAETWALADYYQ 177 (232)
T ss_dssp HHHHHHH--------HHHTSCCEEECTTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHH--------HhCCCCeEEEEecCCCCHHHHHHHHHHcC
Confidence 2222111 112246778899988 56888887553
No 17
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.00 E-value=1.1e-09 Score=97.47 Aligned_cols=109 Identities=23% Similarity=0.230 Sum_probs=73.8
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCCceEEEechhhhHHHHHH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~ 305 (420)
.++++++|||+||++++.++.+. |.++.++++.+...+|..+++++|+.+|++|+.+.++.......+..
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~----------g~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~ 76 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKL----------GYNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRKIVEKAADM 76 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHT----------TEEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCTHHHHHHHHH
T ss_pred CeEEEEEECcHHHHHHHHHHHHc----------CCCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH
Confidence 57999999999999999988764 25788888877655588999999999999999988875322222222
Q ss_pred HHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccc
Q 014715 306 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (420)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf 349 (420)
... ...+. ..+.....+.+.+.| + |+++++||+.+|...
T Consensus 77 ~~~-~~~~~--~~c~~~~~~~l~~~A-~-g~~~i~tGh~~dD~~ 115 (203)
T 3k32_A 77 IIE-HKYPG--PAIQYVHKTVLEILA-D-EYSILADGTRRDDRV 115 (203)
T ss_dssp HHH-HSSSH--HHHHHHHHHHHHHHT-T-TCSEEECCCCTTCCS
T ss_pred HHh-cCCCc--cHHHHHHHHHHHHHh-c-CCCEEEECCCcccch
Confidence 221 11111 111112223333333 3 899999999999865
No 18
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.99 E-value=4.7e-10 Score=115.73 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHHhhhhccc--ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC--CcHHHHHHH
Q 014715 206 DPLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEV 281 (420)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~--~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~v 281 (420)
..+++.+.+...++.++.. ...+.+.||||+||+++|+++.+.+.. .++.++++..... .|...|+++
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~--------~~v~~v~m~~~~~~~~~~~~A~~l 376 (590)
T 3n05_A 305 ADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA--------QNVYGVSMPSKYSSDHSKGDAAEL 376 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCSSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc--------ccEEEEEECCCCCCHHHHHHHHHH
Confidence 3456666666666666643 357889999999999999999887521 4788999876543 477899999
Q ss_pred HHHhCCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccccc
Q 014715 282 ADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (420)
Q Consensus 282 A~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~~ 355 (420)
|+.+|++|+++++++. .+.+.+.+. .+......+...+.+..+...|.+.|..++.|| +.||++.||..+
T Consensus 377 a~~lgi~~~~i~i~~~--~~~~~~~l~-~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy~t~ 446 (590)
T 3n05_A 377 ARRTGLNFRTVSIEPM--FDAYMASLG-LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVGYSTL 446 (590)
T ss_dssp HHHHTCEEEECCSHHH--HHHHHHHHC-CCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHTCCCS
T ss_pred HHHcCCcEEEEEChHH--HHHHHHHhc-ccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcCchhh
Confidence 9999999999877542 222221111 000000011122334556677788899999999 788999888643
No 19
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.92 E-value=2.6e-09 Score=97.88 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHH
Q 014715 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVAD 283 (420)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~ 283 (420)
..+++.+.|.+.|++. ...++.+.||||+||+++++++.+.+. +..++++.... ..|...|+++|+
T Consensus 12 ~~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~a~l~~~~~~----------~~~av~~~~~~~~~~~~~~a~~~a~ 79 (249)
T 3fiu_A 12 YSQKLVNWLSDSCMNY--PAEGFVIGLSGGIDSAVAASLAVKTGL----------PTTALILPSDNNQHQDMQDALELIE 79 (249)
T ss_dssp HHHHHHHHHHHHHHTT--TCSEEEEECCSSHHHHHHHHHHHHTTS----------CEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEecCcHHHHHHHHHHHHhCC----------CCEEEEecCCCCCHHHHHHHHHHHH
Confidence 3466677777777553 335688999999999999999988652 33377776542 247889999999
Q ss_pred HhCCCceEEEechhhhHHHHHHHHHhh-c-cCCccccc--c---hhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 284 YLGTVHHEFHFTVQDGIDAIEEVIYHV-E-TYDVTTIR--A---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~---~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
.+|++|+++++++ ..+.+.+.+... . ......+. + -+-+..+...|++.|+.++-||+ .||.+.||..
T Consensus 80 ~lgi~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn-~sE~~~G~~t 154 (249)
T 3fiu_A 80 MLNIEHYTISIQP--AYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDN-ACEWYMGYFT 154 (249)
T ss_dssp HHTCEEEECCCHH--HHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCSC
T ss_pred HhCCCEEEEEChH--HHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCC-HHHHhcCchh
Confidence 9999999887753 222222211100 1 00100111 1 12234566778888999999995 5788888753
No 20
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.89 E-value=1e-09 Score=100.53 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHh
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~l 285 (420)
+.+..-|.+.|++. ...++.+.||||+||+++++++.+.+ |.++.++++.... ..|...|+++|+.+
T Consensus 11 ~~l~~~l~d~v~~~--g~~~vvv~lSGGiDSsv~a~l~~~~~---------g~~v~av~~~~~~~~~~~~~~a~~~a~~l 79 (249)
T 3p52_A 11 EKMCDFIQEKVKNS--QSQGVVLGLSGGIDSALVATLCKRAL---------KENVFALLMPTQISNKANLEDALRLCADL 79 (249)
T ss_dssp HHHHHHHHHHHHTS--SCSEEEEECCSSHHHHHHHHHHHHHH---------TTSEEEEECCSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEcCCCHHHHHHHHHHHHHc---------CCcEEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 34444444444432 24578999999999999999998875 3578888887653 35778899999999
Q ss_pred CCCceEEEechhhhHHHHHHHHHhhccCCcccccc---hhHHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 286 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
|++|+.+++++ ..+.+ .....+++....++ -+-+..+...|++.|+.++-||+- ||++-||.
T Consensus 80 gi~~~~v~i~~--~~~~~---~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~-se~~~g~~ 144 (249)
T 3p52_A 80 NLEYKIIEIQS--ILDAF---IKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNK-SELLLGYG 144 (249)
T ss_dssp TCEEEECCCHH--HHHHH---HTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHHHTCS
T ss_pred CCCEEEEECcH--HHHHH---HHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCH-HHHHccch
Confidence 99998877653 22222 11111111101111 122335667788889887777665 56556664
No 21
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.83 E-value=4e-09 Score=98.01 Aligned_cols=143 Identities=10% Similarity=0.012 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhccccccc-ccCCcceeEEeecCCCCcHHHHHHHHHHhC
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAAR-QWGTQLHSFCVGLEGSPDLKYAKEVADYLG 286 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg 286 (420)
+.+.+-|.+.|++. .....+.+.||||+||+++++++++....-+... +.+.++.++++.+....|...|+++|+.+|
T Consensus 24 ~~~~~~L~~~l~~~-g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~dA~~va~~lg 102 (275)
T 1wxi_A 24 RRSVDFLKSYLQTY-PFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQ 102 (275)
T ss_dssp HHHHHHHHHHHHHS-TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc-CCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHHHHHHHHHcC
Confidence 33444444444332 1034688999999999999998887642100000 001267788877654568899999999999
Q ss_pred C-CceEEEechhhhHHHHHHHHHhhc-cCCcccccc---hhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 287 T-VHHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 287 ~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
+ +|+++++++ ..+.+.+.+.... ++......+ -+.+..+...|.+.|..|+-|| ..+|.+.||..
T Consensus 103 i~~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTg-n~~E~~~Gy~t 172 (275)
T 1wxi_A 103 PDRVLTVNIKG--AVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTD-HAAEAITGFFT 172 (275)
T ss_dssp CSEEEECCCHH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCC-CHHHHTTTCSC
T ss_pred CCeEEEEecHH--HHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECc-cHHHHccCccc
Confidence 9 888877753 2333333332211 111101111 1112334556667787666555 45677888854
No 22
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.74 E-value=1.6e-08 Score=98.16 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=77.1
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC----------CcHHHHHHHHHHhCCCceEEEe
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS----------PDLKYAKEVADYLGTVHHEFHF 294 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~----------~d~~~A~~vA~~lg~~~~~~~~ 294 (420)
..++.+.+|||+||++++.++.+.. .++.++++..... .|...|+++|+.+|++|+.+++
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~ 78 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQG----------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNF 78 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC----------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3579999999999999999998753 5788888754311 3678899999999999999988
Q ss_pred chhhh---HHHHHHHHHhhccCCcccccchhH-HHHHHHHHHhcCCEEEEeccCCcccc
Q 014715 295 TVQDG---IDAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (420)
Q Consensus 295 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~a~~~g~~v~ltG~GgDelf 349 (420)
+.+.. .+.+.+......+|++...++... +..+.+.|.+.|++.+.||+.+|...
T Consensus 79 ~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~ 137 (376)
T 2hma_A 79 EKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVAR 137 (376)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhh
Confidence 64321 111111111122343221211111 23456778889999999999998764
No 23
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.72 E-value=1.6e-08 Score=95.58 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=76.9
Q ss_pred HHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHH-HHHHhC
Q 014715 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKE-VADYLG 286 (420)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~-vA~~lg 286 (420)
+.+...+.++..+. ..++.++||||+||+++++++.+.. |.++.++++.... ..|...+++ +++.+|
T Consensus 6 ~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~lg 75 (308)
T 2dpl_A 6 FVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAI---------GDRLHAVFVNTGFLRKGEPEFVVKTFRDEFG 75 (308)
T ss_dssp HHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCCCTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhh---------CCCEEEEEEcCCCCChHHHHHHHHHHHHHcC
Confidence 33334444444444 3579999999999999999998874 2478888876543 357777877 667899
Q ss_pred CCceEEEechhhhHHHHHHHHHhhccCCc-ccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
++|+.+.++.. +.+.+ .....|.. ..+........+.+.|++.|++.+++|+..|.+
T Consensus 76 i~~~vv~~~~~-f~~~l----~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~ 133 (308)
T 2dpl_A 76 MNLHYVDAQDR-FFSAL----KGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDW 133 (308)
T ss_dssp CEEEEEECHHH-HHHHT----TTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--
T ss_pred CcEEEEECCHH-HHHhh----hCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccc
Confidence 99999887531 11111 00000100 000001122345667888899999999998844
No 24
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.72 E-value=5.8e-08 Score=95.02 Aligned_cols=110 Identities=17% Similarity=0.148 Sum_probs=74.9
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCCC-ceEEEechhhhHHH-
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV-HHEFHFTVQDGIDA- 302 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~~-~~~~~~~~~~~~~~- 302 (420)
..++.+++|||+||++++.++.+.. .++.++++.+....|.+.|+++|+.+|++ ++.+.++ +++.+.
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~G----------~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~~ 73 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQG----------YDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS-REFVEEF 73 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHTT----------EEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHHT
T ss_pred CCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEeCh-HHHHHHH
Confidence 4679999999999999999988752 57889998876668899999999999998 6666764 333322
Q ss_pred HHHHHHhhccCC-----cccccchhHHHHHHHHHHhcCCEEEEeccCC
Q 014715 303 IEEVIYHVETYD-----VTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (420)
Q Consensus 303 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~a~~~g~~v~ltG~Gg 345 (420)
....+.....+. ............+.+.|++.|++++++|+.+
T Consensus 74 ~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~ 121 (413)
T 2nz2_A 74 IWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 121 (413)
T ss_dssp HHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 212222111111 0000011123456677888899999999987
No 25
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.71 E-value=6.6e-08 Score=94.37 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=74.6
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCC-CceEEEechhhhHHHH-H
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAI-E 304 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~-~~~~~~~~~~~~~~~~-~ 304 (420)
++.+++|||+||++++.++.+.. |.++.++++......|.+.++++|+.+|+ +++.+.+.. ++.+.+ .
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~---------g~~V~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~~-ef~~~~~~ 71 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETY---------RAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKE-EFVRDFVF 71 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHH---------TCEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECHH-HHHHHTHH
T ss_pred cEEEEEeChHHHHHHHHHHHHhh---------CCcEEEEEEeCCCHHHHHHHHHHHHHhCCCeEEEEeCcH-HHHHHhhH
Confidence 57899999999999999998764 25788898876556789999999999999 677777652 333221 1
Q ss_pred HHHHhhccC----Cc-ccccchhHHHHHHHHHHhcCCEEEEeccCCc
Q 014715 305 EVIYHVETY----DV-TTIRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (420)
Q Consensus 305 ~~~~~~~~~----~~-~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgD 346 (420)
..+.....+ .. ...........+.+.|++.|++++++|+.+|
T Consensus 72 ~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 72 PMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 222211111 10 0001111234567778889999999999986
No 26
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.71 E-value=3.7e-08 Score=95.76 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=74.4
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHhCC-CceEEEechhhhHHH-H
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-I 303 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg~-~~~~~~~~~~~~~~~-~ 303 (420)
.+|.+++|||+|||++++++.+.. .++.++|+......|.+.|+++|+.+|+ +|+++++. +++.+. +
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G----------~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvDl~-eef~~~v~ 83 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKG----------FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLR-REFVTDYI 83 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHHTH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCC----------CeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEecH-HHHHHhhh
Confidence 468999999999999999998753 6889999877656799999999999999 88888875 333332 1
Q ss_pred HHHHHhhcc----CCc-ccccchhHHHHHHHHHHhcCCEEEEeccCC
Q 014715 304 EEVIYHVET----YDV-TTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (420)
Q Consensus 304 ~~~~~~~~~----~~~-~~~~~~~~~~~l~~~a~~~g~~v~ltG~Gg 345 (420)
...+..... +.. ..++.....-.+.+.|++.|++.+.+|.-+
T Consensus 84 ~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~ 130 (421)
T 1vl2_A 84 FTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATG 130 (421)
T ss_dssp HHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred hHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCee
Confidence 111211100 110 000111112345677888999999999876
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.70 E-value=5.1e-08 Score=92.69 Aligned_cols=125 Identities=10% Similarity=0.047 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhhh--cccccceeEEecCCcchHHHHHHHHHHhcccccccccCCc-ceeEEeecCCC----CcHHHHHH
Q 014715 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQ-LHSFCVGLEGS----PDLKYAKE 280 (420)
Q Consensus 208 ~~l~~~l~~aV~~r--l~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~----~d~~~A~~ 280 (420)
..+.+.+.+++++. +....++.+.+|||.||++++.++.+.... +|.+ +.++++...-. .|..++++
T Consensus 5 ~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~------~g~~~v~av~vd~g~r~~s~~~~~~v~~ 78 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------FSLKEVALAHFNHMLRESAERDEEFCKE 78 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------TTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH------cCCCEEEEEEEECCCCcccHHHHHHHHH
Confidence 34666677777764 456678999999999999999998875321 1346 77788765422 36788999
Q ss_pred HHHHhCCCceEEEechhhhHHHHHHHHHhhccCCcccccchhHHH-HHHHHHHhcCCEEEEeccCCcc
Q 014715 281 VADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 281 vA~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~a~~~g~~v~ltG~GgDe 347 (420)
+|+.+|++++.+.++...+... ...+. ........| .+.+.+++.|+++++||+.+|.
T Consensus 79 ~a~~lgi~~~v~~~~~~~~~~~--------~~~~~-e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD 137 (317)
T 1wy5_A 79 FAKERNMKIFVGKEDVRAFAKE--------NRMSL-EEAGRFLRYKFLKEILESEGFDCIATAHHLND 137 (317)
T ss_dssp HHHHHTCCEEEEECCHHHHHHH--------TTCCH-HHHHHHHHHHHHHHHHHHTTCSEEECCCCHHH
T ss_pred HHHHcCCcEEEEEEechhhhcc--------CCCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEeCchhH
Confidence 9999999999988764322110 01110 000111123 4566778889999999999885
No 28
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.62 E-value=7.8e-08 Score=93.34 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=74.9
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC----------CCcHHHHHHHHHHhCCCceEEEe
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 294 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~----------~~d~~~A~~vA~~lg~~~~~~~~ 294 (420)
..++.+.+|||+||++++.++.+. |.++.++++.... ..|...|+++|+.+|++++.+++
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~----------G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQ----------GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTT----------CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHc----------CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 457899999999999999998865 3678888875422 13678899999999999999987
Q ss_pred chhhhHHH----HHHHHHhhccCCcccccchh-HHHHHHHHHHh-cCCEEEEeccCCccc
Q 014715 295 TVQDGIDA----IEEVIYHVETYDVTTIRAST-PMFLMSRKIKS-LGVKMVISGEGSDEI 348 (420)
Q Consensus 295 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~l~~~a~~-~g~~v~ltG~GgDel 348 (420)
+.+ +.+. +.+......+|++...++.. -+..+.+.|.+ .|++.+.||+.+|..
T Consensus 87 ~~~-f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~ 145 (380)
T 2der_A 87 AAE-YWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRA 145 (380)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEE
T ss_pred cHH-HHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccc
Confidence 632 2221 11111111233322112111 12245666777 899999999998864
No 29
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.54 E-value=1.6e-07 Score=92.41 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=75.7
Q ss_pred hhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCC-CceEEEech
Q 014715 220 KRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTV 296 (420)
Q Consensus 220 ~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~-~~~~~~~~~ 296 (420)
..+....+|.+++|||+||++++.++.+. |.++.++++.... ..|.+.|+++|+.+|+ +|+.+++.
T Consensus 5 ~~l~~~~KVvVA~SGGlDSSvll~~L~e~----------G~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~- 73 (455)
T 1k92_A 5 KHLPVGQRIGIAFSGGLDTSAALLWMRQK----------GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCR- 73 (455)
T ss_dssp CSCCTTSEEEEECCSSHHHHHHHHHHHHT----------TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECH-
T ss_pred hhhcCCCeEEEEEcChHHHHHHHHHHHHc----------CCEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeCh-
Confidence 44566678999999999999999998775 2578888886653 3588999999999999 78888875
Q ss_pred hhhHHHHHHHHHhhccC--Ccc-cccchh------HHHHHHHHHHhcCCEEEEeccC
Q 014715 297 QDGIDAIEEVIYHVETY--DVT-TIRAST------PMFLMSRKIKSLGVKMVISGEG 344 (420)
Q Consensus 297 ~~~~~~~~~~~~~~~~~--~~~-~~~~~~------~~~~l~~~a~~~g~~v~ltG~G 344 (420)
+++.+.....+.....+ ... ...... ..-.+.+.|++.|++.+.+|.-
T Consensus 74 eef~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht 130 (455)
T 1k92_A 74 KQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGST 130 (455)
T ss_dssp HHHHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 33333211222211111 000 001111 1234567788899999999985
No 30
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.49 E-value=1.3e-07 Score=87.48 Aligned_cols=142 Identities=10% Similarity=0.053 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccc-cccCCcceeEEeecCCCCcHHHHHHHHHHhC
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAA-RQWGTQLHSFCVGLEGSPDLKYAKEVADYLG 286 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~d~~~A~~vA~~lg 286 (420)
+.+.+-|.+.+++. ....+.+.||||+||+++++++.+....-+.. ...+.++.++++.+....+...|+++|+.+|
T Consensus 25 ~~~v~~L~d~l~~~--g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~~~~~~A~~~a~~lg 102 (279)
T 3q4g_A 25 ERRVAFIKRKLTEA--RYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDEDEAQLALSFIR 102 (279)
T ss_dssp HHHHHHHHHHHHHH--TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSCSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc--CCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCChHHHHHHHHHHHHhC
Confidence 33344444444332 22468899999999999999876542100000 0001367777777655567899999999999
Q ss_pred C-CceEEEechhhhHHHHHH----HHH-hh-----ccCCcccccc---hhHHHHHHHHHHhcCCEEEEeccCCccccccc
Q 014715 287 T-VHHEFHFTVQDGIDAIEE----VIY-HV-----ETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (420)
Q Consensus 287 ~-~~~~~~~~~~~~~~~~~~----~~~-~~-----~~~~~~~~~~---~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy 352 (420)
+ +|+++++++ ..+.+.. .+. .. ..+......+ -+-+-.++..|.+.|.-|+=||+- +|++-||
T Consensus 103 i~~~~~i~i~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn~-sE~~~Gy 179 (279)
T 3q4g_A 103 PTHSVSVNIKA--GVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDHS-AENITGF 179 (279)
T ss_dssp CSEEEECCCHH--HHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCH-HHHHHTC
T ss_pred CCeEEEEECHH--HHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCccH-Hhhhccc
Confidence 9 788877753 2332222 111 00 0111100111 122345566677778755555555 5666777
Q ss_pred cc
Q 014715 353 LY 354 (420)
Q Consensus 353 ~~ 354 (420)
..
T Consensus 180 ~T 181 (279)
T 3q4g_A 180 YT 181 (279)
T ss_dssp SC
T ss_pred hh
Confidence 43
No 31
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.36 E-value=8.7e-07 Score=88.58 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=74.5
Q ss_pred cccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC-----CcHHHHHHHHHHhCCCceEEEech
Q 014715 222 LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYAKEVADYLGTVHHEFHFTV 296 (420)
Q Consensus 222 l~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-----~d~~~A~~vA~~lg~~~~~~~~~~ 296 (420)
+....++.+++|||.||++++.++.+..... +.++.++++...-. .|..+++++|+.+|++++.+.++.
T Consensus 15 ~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~------~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~~ 88 (464)
T 3a2k_A 15 LSEGAAVIVGVSGGPDSLALLHVFLSLRDEW------KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDV 88 (464)
T ss_dssp SSCSSBEEEECCSSHHHHHHHHHHHHHHHTT------TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc------CCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEech
Confidence 4556789999999999999999998754221 35777888765432 366789999999999999888764
Q ss_pred hhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcc
Q 014715 297 QDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
..+.+. .........-..-...+.+.+++.|+.+++||+-+|.
T Consensus 89 ~~~~~~--------~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD 131 (464)
T 3a2k_A 89 PAFQRS--------AGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDD 131 (464)
T ss_dssp HHHHTT--------TTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHH
T ss_pred hhhhhc--------cCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHH
Confidence 321110 0111000000111234566777889999999998885
No 32
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.28 E-value=9.1e-07 Score=89.74 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHH-HHHH
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKE-VADY 284 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~-vA~~ 284 (420)
+.+.+.+.+.++..+.. .++.+.||||+||+++++++.+.. |.++.++++.... ..|.+.+.+ +|+.
T Consensus 211 ~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~---------G~~v~av~v~~g~~~~~e~~~~~~~la~~ 280 (525)
T 1gpm_A 211 AKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAI---------GKNLTCVFVDNGLLRLNEAEQVLDMFGDH 280 (525)
T ss_dssp HHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHTTT
T ss_pred HHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHh---------CCCEEEEEEeCCCCCchHHHHHHHHHHHH
Confidence 34444455555555544 689999999999999999998875 2478888876542 356777755 8999
Q ss_pred hCCCceEEEechhhhHHHHHHHHHhhccCCc-ccccchhHHHHHHHHHHhc-CCEEEEeccCC
Q 014715 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSL-GVKMVISGEGS 345 (420)
Q Consensus 285 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~a~~~-g~~v~ltG~Gg 345 (420)
+|++++.++++. .+.+.+. ....|.. ..+........+.+.|++. |++.+++|.-.
T Consensus 281 lgi~~~~v~~~~-~f~~~l~----~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~ 338 (525)
T 1gpm_A 281 FGLNIVHVPAED-RFLSALA----GENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIY 338 (525)
T ss_dssp TCCCEEEEECHH-HHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCH
T ss_pred hCCcEEEEeccH-HHHHhhc----CCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 999999988753 1222111 0111100 0000011122345667777 89999999953
No 33
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.27 E-value=1.3e-06 Score=88.55 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeec--CCCCcHHHHHH-HHHHhC
Q 014715 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKE-VADYLG 286 (420)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~d~~~A~~-vA~~lg 286 (420)
+.+.+.+.++..+.. .++.++||||+||++++.++.+.. |.++.++++.. ....|...+.+ +|+.+|
T Consensus 216 ~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~---------G~~v~av~vd~g~~~~~e~~~~~~~~a~~lg 285 (527)
T 3tqi_A 216 IIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAI---------GDQLVCVLVDTGLLRLNEVDEVLNVFQKHLG 285 (527)
T ss_dssp HHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHH---------GGGEEEEEECCSCSCTTHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHh---------CCeEEEEEeccCCCChhHHHHHHHHHHHHcC
Confidence 333333445555444 679999999999999999998874 25788888744 33457777765 999999
Q ss_pred CCceEEEechhhhHHHHHHHHHhhccCCcccc-c---chhHHHHHHHHHHhcCCEEEEeccCCcccc
Q 014715 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTI-R---ASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (420)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~l~~~a~~~g~~v~ltG~GgDelf 349 (420)
++++.++++.. +.+. ......+.. + .......+.+.|++.|++.+++|+..|.+.
T Consensus 286 i~~~vv~~~~~-~~~~-------l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~ 344 (527)
T 3tqi_A 286 AKVICVDAKDR-FMKA-------LKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVI 344 (527)
T ss_dssp CEEEEECCHHH-HHSS-------SSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHH
T ss_pred CcEEEEeChHH-HHHh-------hcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccc
Confidence 99988776421 1110 000000000 0 001112344567788999999999777664
No 34
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.24 E-value=6.5e-07 Score=82.94 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=73.4
Q ss_pred HHhhhhccc--ccceeEEecCCcchHHHHHHHHHH---hcccccccccCC--cceeEEeecCCCCcHHHHHHHHHHhC-C
Q 014715 216 NAVIKRLMT--DVPFGVLLSGGLDSSLVASITARH---LAGTKAARQWGT--QLHSFCVGLEGSPDLKYAKEVADYLG-T 287 (420)
Q Consensus 216 ~aV~~rl~~--~~~v~~~LSGGlDSs~iaa~~~~~---~~~~~~~~~~~~--~~~~~t~~~~~~~d~~~A~~vA~~lg-~ 287 (420)
..++.++.. ...+.+.||||+||+++++++++. +... +. .+.++++.+....|...|+++|+.+| +
T Consensus 35 ~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~------~~~~~viav~~p~~~~~~~~dA~~~a~~lg~i 108 (285)
T 3dpi_A 35 GFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRAS------GYDARFVAMRLPYGAQHDEADARRALAFVRAD 108 (285)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHT------TCCCEEEEEECCSCC---CHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhccc------CcccEEEEEEcCCCCHHHHHHHHHHHHHcCCC
Confidence 445555432 356889999999999998776653 2211 12 45666665544456778999999999 6
Q ss_pred CceEEEechhhhHHHHHHHHHhh-ccCC-----c---ccccchhHHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 288 VHHEFHFTVQDGIDAIEEVIYHV-ETYD-----V---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~---~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
+|+++++++ ..+.+.+.+... ..+. . .++..-+-+-.++..|.+.|.-|+-||+-+ |++-||.
T Consensus 109 ~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~s-E~~~Gy~ 180 (285)
T 3dpi_A 109 ETLTVDVKP--AADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAA-ESVMGFF 180 (285)
T ss_dssp EEEECCCHH--HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHH-HHHHHHH
T ss_pred cEEEEEChH--HHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHH-hhhCCcc
Confidence 888877754 233222222110 0110 0 011112233456667777888777777664 5556664
No 35
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.23 E-value=2.2e-06 Score=86.43 Aligned_cols=118 Identities=16% Similarity=0.073 Sum_probs=74.2
Q ss_pred HHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHHHHhCCCceE
Q 014715 214 FENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHE 291 (420)
Q Consensus 214 l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA~~lg~~~~~ 291 (420)
..+.++..+.. .++.+.+|||+||++++.++.+.. .++.++++... ...|.+.++++|+.+|++++.
T Consensus 199 ~i~~ir~~~~~-~kvvvalSGGvDSsvla~ll~~~g----------~~v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~v 267 (503)
T 2ywb_A 199 LLREVRERAGK-DRVLLAVSGGVDSSTLALLLAKAG----------VDHLAVFVDHGLLRLGEREEVEGALRALGVNLLV 267 (503)
T ss_dssp HHHHHHHHHTT-SEEEEEECSSHHHHHHHHHHHHHT----------CEEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEE
T ss_pred HHHhhhhhccC-ccEEEEecCCcchHHHHHHHHHcC----------CeEEEEEEeCCCCChHHHHHHHHHHHHhCCCEEE
Confidence 33444444433 579999999999999999998862 57888887543 346788999999999999999
Q ss_pred EEechhhhHHHHHHHHHhhccCCc-ccccchhHHHHHHHHHHhc-CCEEEEeccCCcc
Q 014715 292 FHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSL-GVKMVISGEGSDE 347 (420)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~a~~~-g~~v~ltG~GgDe 347 (420)
+.++.. +.+.+ .....|.. ..++.......+.+.|++. |++.+++|+..|.
T Consensus 268 v~~~~~-f~~~l----~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D 320 (503)
T 2ywb_A 268 VDAKER-FLKAL----KGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPD 320 (503)
T ss_dssp EECHHH-HHHHH----TTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHH
T ss_pred EECcHH-HHHhh----cCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCcc
Confidence 886531 11111 10000100 0000011112345557677 8999999997553
No 36
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.21 E-value=5.7e-06 Score=73.89 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=68.2
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCCceEEEechhhhHHHH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~ 303 (420)
.++.+.+|||.||++++.++.+.. .++..+++...- ..+..+++++|+.+|++++.+..... ....
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----------~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~~--~~~~ 112 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES--AAWQ 112 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----------TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECSSC--HHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----------CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCCC--HHHH
Confidence 479999999999999999998874 466677765432 23467899999999999988775432 1111
Q ss_pred HHHHHhhccCCc-ccccchhH----HHHHHHHHHhcCCEEEEeccCCccc
Q 014715 304 EEVIYHVETYDV-TTIRASTP----MFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~~~----~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
... . ...+.. +..+.... ...+.+.+++.|+.++++|.-.|+-
T Consensus 113 ~~~-~-g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~ 160 (215)
T 1sur_A 113 EAR-Y-GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS 160 (215)
T ss_dssp HHH-H-CCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSS
T ss_pred HHh-c-CCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhh
Confidence 110 0 000000 00000000 1134456677788899999999883
No 37
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=98.17 E-value=4e-06 Score=82.39 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=69.9
Q ss_pred ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC-C--CcHHHHHHHHHHh-----CCCceEEEech
Q 014715 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-S--PDLKYAKEVADYL-----GTVHHEFHFTV 296 (420)
Q Consensus 225 ~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~--~d~~~A~~vA~~l-----g~~~~~~~~~~ 296 (420)
..++.+++|||+||++++.++.+. |.++.++++.... . .+...++++|+.+ |++++.++++.
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~~----------G~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~ 256 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMKR----------GVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTE 256 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHHB----------TEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHH
T ss_pred CCeEEEEeCCCChHHHHHHHHHHc----------CCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcH
Confidence 456889999999999999998874 3578888876532 2 3556788889988 89999888653
Q ss_pred hhhHHHHHHHHHhhccCCcccccchhHHH-HHHHHHHhcCCEEEEeccCCccc
Q 014715 297 QDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~a~~~g~~v~ltG~GgDel 348 (420)
. ...+ ...... .......--.++ .+.+.|++.|+..+++|+..|.+
T Consensus 257 ~--~~~i---~~~~~~-~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ 303 (413)
T 2c5s_A 257 V--QKTI---NKEIPS-SYSMTVMRRMMMRITERIAEERNALAITTGESLGQV 303 (413)
T ss_dssp H--HHHH---HHHSCG-GGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSST
T ss_pred H--HHHH---HhcCCc-ccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhh
Confidence 2 1111 111110 000000001222 34567788999999999988765
No 38
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.17 E-value=4.2e-06 Score=86.74 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhhhcc--cccceeEEecCCcchHHHHHHHH-------HHhcccccccc--------c----CCc----
Q 014715 207 PLVLRQAFENAVIKRLM--TDVPFGVLLSGGLDSSLVASITA-------RHLAGTKAARQ--------W----GTQ---- 261 (420)
Q Consensus 207 ~~~l~~~l~~aV~~rl~--~~~~v~~~LSGGlDSs~iaa~~~-------~~~~~~~~~~~--------~----~~~---- 261 (420)
.+++...+...++.+++ ....+.+.||||+||+++|++++ +.+..++...+ . ...
T Consensus 283 ~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T 3ilv_A 283 EFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQ 362 (634)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccc
Confidence 34555555555555543 33568899999999999999843 43322100000 0 000
Q ss_pred --------ceeEEeecCCC--CcHHHHHHHHHHhCCCceEEEechhhhHHHHHHHHHh--hccCCccc----ccc---hh
Q 014715 262 --------LHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYH--VETYDVTT----IRA---ST 322 (420)
Q Consensus 262 --------~~~~t~~~~~~--~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~---~~ 322 (420)
++++.++...+ .+...|+++|+.+|++|+++++.+ ..+.+.+.+.. ..+|.... ..+ -+
T Consensus 363 ~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~--~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~ 440 (634)
T 3ilv_A 363 AKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDE--EIEQYKATIENVIERPLTWEKDDITLQNIQARG 440 (634)
T ss_dssp HHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHH--HHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHT
T ss_pred hhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHH--HHHHHHHHHHHhhCCCcccccCcchhhhhhHHH
Confidence 55777665444 356789999999999999988753 22222222211 11111100 001 11
Q ss_pred HHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 323 PMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 323 ~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
.+-.+...|.+.|..|+=||+ -+|+.-||.
T Consensus 441 R~~~l~~~A~~~g~lvlgTgn-ksE~~~Gy~ 470 (634)
T 3ilv_A 441 RAPIIWMLTNVKQALLITTSN-RSEGDVGYA 470 (634)
T ss_dssp THHHHHHHHHHHTCEEBCCCC-HHHHHTTCS
T ss_pred HHHHHHHHHHhcCCEEeccCc-hhhHhhCCc
Confidence 122344556667887766664 467777774
No 39
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.13 E-value=2e-05 Score=82.19 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHh
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~l 285 (420)
+.+.+.+.+.++..+. +.++.+.||||+||+++++++.+.... .++.++++.... ..|.+.|+++|+.+
T Consensus 224 ~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~~alG~--------~~V~aV~vd~g~~~~~e~e~a~~~a~~l 294 (697)
T 2vxo_A 224 QNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNRALNQ--------EQVIAVHIDNGFMRKRESQSVEEALKKL 294 (697)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHHSCG--------GGEEEEEEECSCCCSSTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHHHhcCC--------ceEEEEEeccccCCcchHHHHHHHHHHh
Confidence 4444555555655553 367999999999999999999887521 478888876543 46788999999999
Q ss_pred CCCceEEEec
Q 014715 286 GTVHHEFHFT 295 (420)
Q Consensus 286 g~~~~~~~~~ 295 (420)
|++++.++++
T Consensus 295 GI~~~vvdi~ 304 (697)
T 2vxo_A 295 GIQVKVINAA 304 (697)
T ss_dssp TCCEEEEECH
T ss_pred CCcEEEecch
Confidence 9999998875
No 40
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.10 E-value=2.7e-06 Score=88.71 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhhhcccc--cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC--CcHHHHHHHHH
Q 014715 208 LVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVAD 283 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~--~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~vA~ 283 (420)
+++.+.+...++++++.. ..+.+.||||+||++.+.++++....-+. .+.++.++++..... .+...|+++|+
T Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~---~~~~v~~v~m~~~~~~~~~~~~A~~la~ 418 (680)
T 3sdb_A 342 YEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGR---PRSDILAFALPGFATGEHTKNNAIKLAR 418 (680)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTC---CGGGEEEEECCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCC---CCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455566666666666533 56889999999999866666554310000 003688888765432 46678999999
Q ss_pred HhCCCceEEEechhhhHHHHHHHHHh----hcc-CCcc--cccchhHHHHHHHHHHhcCCEEEEeccCCcccccccc
Q 014715 284 YLGTVHHEFHFTVQDGIDAIEEVIYH----VET-YDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (420)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~--~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~ 353 (420)
.+|++|+++++++ ..+.+.+.+.. .+. .+.. .+...+-+..+...+.+.|.-|+-||+ .+|++-||.
T Consensus 419 ~lgi~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn-~sE~~~Gy~ 492 (680)
T 3sdb_A 419 ALGVTFSEIDIGD--TARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGD-LSELALGWS 492 (680)
T ss_dssp HHTCEEEECCCHH--HHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCC-HHHHHHTCS
T ss_pred HcCCCEEEEECHH--HHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCc-HHhHhcCee
Confidence 9999999887753 22222111110 000 1100 011112223344556666776665654 467777774
No 41
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.00 E-value=1.1e-05 Score=79.69 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=68.1
Q ss_pred hcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCC----CcHHHHHHHHHHhCCCceEEEech
Q 014715 221 RLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS----PDLKYAKEVADYLGTVHHEFHFTV 296 (420)
Q Consensus 221 rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~----~d~~~A~~vA~~lg~~~~~~~~~~ 296 (420)
.+....++.+++|||.||++++.++.+..... .|.++.++++...-. .|..+++++|+.+|++++.+.++.
T Consensus 9 ~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~ 83 (433)
T 1ni5_A 9 QLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-----PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQL 83 (433)
T ss_dssp HHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-----TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred hcCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-----CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 34556789999999999999999998754220 135677777754322 256789999999999999887653
Q ss_pred hhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcc
Q 014715 297 QDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
.. ...+.... .....|.+...+.. ++.+++||+-+|.
T Consensus 84 ~~------------~~~~~e~~-aR~~Ry~~l~~~a~-~~~~i~tgH~~dD 120 (433)
T 1ni5_A 84 AQ------------EGLGIEAQ-ARQARYQAFARTLL-PGEVLVTAQHLDD 120 (433)
T ss_dssp CC------------SSSTTTTH-HHHHHHHHHHHTCC-TTEEEECCCCHHH
T ss_pred CC------------CCCCHHHH-HHHHHHHHHHHHHh-hCCeEEeeccchH
Confidence 20 00110000 01112322222222 4899999998875
No 42
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.00 E-value=1.1e-05 Score=82.18 Aligned_cols=126 Identities=10% Similarity=0.125 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhhhcccccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHH-HHHHHH
Q 014715 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYA-KEVADY 284 (420)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A-~~vA~~ 284 (420)
+.+.+...+.+++. ..+.++.+.||||+||+++|+++.+.. |.++.++++... ...|...+ +.+|+.
T Consensus 239 ~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~---------G~~v~~v~vd~g~~~~~e~~~~~~~~~~~ 308 (556)
T 3uow_A 239 IRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIF---------KERFFGIFIDNGLLRKNEAENVYTFLKST 308 (556)
T ss_dssp HHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHHHH
T ss_pred ccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHh---------CCeEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 44445555556665 436789999999999999999998875 257888887543 34566666 668999
Q ss_pred h-CCCceEEEechhhhHHHHHHHHHhhccCCc-ccccchhHHHHHHHHHHhcCC----EEEEeccCCccc
Q 014715 285 L-GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLGV----KMVISGEGSDEI 348 (420)
Q Consensus 285 l-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~a~~~g~----~v~ltG~GgDel 348 (420)
+ |++|+.++++.. +...+. ....+.. ..+........+.+.|++.|. +.+.+|...|.+
T Consensus 309 l~gi~~~~vd~~~~-f~~~l~----g~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ 373 (556)
T 3uow_A 309 FPDMNITKIDASEN-FLSNLQ----GVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDI 373 (556)
T ss_dssp CTTSEEEEEECHHH-HHHHTT----TCCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHH
T ss_pred cCCCCeEEeccHHH-HHHhhc----CCCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHH
Confidence 9 999999887532 121110 0000000 000001112234556666664 899999765544
No 43
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.95 E-value=4.1e-05 Score=78.18 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhhhccc--ccceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCc--HHHHHHHH
Q 014715 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD--LKYAKEVA 282 (420)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d--~~~A~~vA 282 (420)
.+++.+.+.-.++.+++. -..+.+-||||+||+++++++.+.+.. .++.++++....+.+ ...|+.+|
T Consensus 280 ~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~--------~~v~~v~mp~~~ts~~t~~~a~~la 351 (565)
T 4f4h_A 280 EAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA--------ERVRAVMMPSRYTAGISTTDAADMA 351 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC--------ccEEEEeccccccccchHHHHHHHH
Confidence 345666666666666653 345778899999999999999988754 478889887655554 46799999
Q ss_pred HHhCCCceEEEechhhhHHHHHHHHHhh-cc-CCcc---cccchhHHHHHHHHHHhcCCEEEEeccCCccccccccc
Q 014715 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-ET-YDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (420)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~---~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf~Gy~~ 354 (420)
+.+|+.++++.+++ ..+.+...+... .. .... ++.+-+.+-.++..+.+.|.-|+=||+- +|+--||..
T Consensus 352 ~~lg~~~~~i~i~~--~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn~-sE~a~Gy~T 425 (565)
T 4f4h_A 352 RRVGVRYDEIAIAP--MFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGNK-SEMAVGYCT 425 (565)
T ss_dssp HHHTCEEEECCCHH--HHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCH-HHHHHTCSC
T ss_pred HHhCCceeeeecch--HHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCch-hhHhhcccc
Confidence 99999999987753 334333333211 11 0000 1111222345566677778878877755 456667753
No 44
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.91 E-value=5.5e-05 Score=67.97 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=44.6
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--------CCcHHHHHHHHHHhCCCceEEEech
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--------SPDLKYAKEVADYLGTVHHEFHFTV 296 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--------~~d~~~A~~vA~~lg~~~~~~~~~~ 296 (420)
++.+++|||.||++.+.++.+.. .++.++..-++. ..+.+.|+++|+.+|++++.++++.
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G----------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR----------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred EEEEEecCcHHHHHHHHHHHHcC----------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 68899999999999988887653 566655433322 2356789999999999999988754
No 45
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.86 E-value=1.1e-05 Score=73.94 Aligned_cols=109 Identities=11% Similarity=0.069 Sum_probs=66.7
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCCceEEEechhhhHHHH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~ 303 (420)
.++.+.+|||.||++++.++.+.. .++..+++...- .....+++++++.+|++++.+..... ....
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----------~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~--~~~~ 113 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES--AAWQ 113 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----------TTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC--HHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----------CCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC--HHHH
Confidence 468999999999999999998875 456677764432 23467899999999999877654321 1111
Q ss_pred HHHHHhhccCCc-ccccchhH----HHHHHHHHHhcCCEEEEeccCCccc
Q 014715 304 EEVIYHVETYDV-TTIRASTP----MFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~~~----~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
... ....+.. +..+.... ...+.+.+++.|+.+++||.-.|+-
T Consensus 114 ~~~--~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds 161 (252)
T 2o8v_A 114 EAR--YGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS 161 (252)
T ss_dssp HHH--TCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTT
T ss_pred HHH--cCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccccc
Confidence 110 0000000 00000000 0123455667788899999999883
No 46
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.81 E-value=4.2e-05 Score=72.50 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=66.8
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCCceEEEechhhhHHHH
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~~~~~~~~~~~~~~~~ 303 (420)
.++.+.+|||.||++++.++.+..... +.++..+++...- .....+++++++.+|++++.+.... ...
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~------~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~--~~~-- 116 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPG------KLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPD--GVA-- 116 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS------CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC---------
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcccc------CCCEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCch--HHh--
Confidence 468899999999999999998875321 1466777764432 2356889999999999987765421 110
Q ss_pred HHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcccc
Q 014715 304 EEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (420)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDelf 349 (420)
.-.. .........+...-...+.+.+++.|.+++++|.-.||--
T Consensus 117 -~G~~-~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~ 160 (325)
T 1zun_A 117 -QGIN-PFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK 160 (325)
T ss_dssp -----------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG
T ss_pred -cCCC-ccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhh
Confidence 0000 0000000000000012345556667899999999988853
No 47
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.69 E-value=5.1e-05 Score=69.77 Aligned_cols=112 Identities=10% Similarity=0.022 Sum_probs=67.5
Q ss_pred ceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecC--CCCcHHHHHHHHHHhCC----CceEEEechhhhH
Q 014715 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGT----VHHEFHFTVQDGI 300 (420)
Q Consensus 227 ~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~vA~~lg~----~~~~~~~~~~~~~ 300 (420)
++.+.+|||.||++++.++.+.... +.++..+++... ......+++++++.+|+ +++.+......-.
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-------~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~~ 115 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-------YYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESE 115 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-------SCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSSH
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-------CCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCccCH
Confidence 6899999999999999999887631 025666666432 22356889999999999 8877654321111
Q ss_pred HHHHHH----HHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCccc
Q 014715 301 DAIEEV----IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (420)
Q Consensus 301 ~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDel 348 (420)
..+.+. .+... +. ..+...-...+.+.+++.|++++++|.-.|+-
T Consensus 116 ~~~~~~~G~~~~~~~-~~--~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds 164 (261)
T 2oq2_A 116 ADFASKYGDFLWEKD-DD--KYDYLAKVEPAHRAYKELHISAVFTGRRKSQG 164 (261)
T ss_dssp HHHHHHHCTTHHHHC-HH--HHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC
T ss_pred HHHHHHhCCCccccC-hH--HHHHHHhHHHHHHHHHHcCCCEEEEeccccch
Confidence 111110 11000 00 00000001123455677899999999999985
No 48
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.55 E-value=0.00011 Score=69.03 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=58.2
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCCCCcHHHHHHHHHHh-------CCCceEEE-echh
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYL-------GTVHHEFH-FTVQ 297 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~vA~~l-------g~~~~~~~-~~~~ 297 (420)
.++.++||| +||++.++++.+. |.++.++++.+ +..+...|+++|+.+ +++++.++ +..
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~----------G~~v~~v~~~~-~~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~~- 246 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKR----------GVEVIPVYIGK-DDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDR- 246 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHB----------TCEEEEEEESC-SSHHHHHHHHHHHHHHTTCTTSCCCCEEESSHHH-
T ss_pred CcEEEEEeC-CcHHHHHHHHHhC----------CCeEEEEEEEE-CHHHHHHHHHHHHHHhhhccCCCCcEEEeCCCHH-
Confidence 467899999 9999999988875 36788888763 223567789999988 66666554 211
Q ss_pred hhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHhcCCEEEEeccCCcc
Q 014715 298 DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (420)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~GgDe 347 (420)
. + +.|.+.|++.+.||+-++.
T Consensus 247 --------~------------------~---~~A~~~ga~~I~tG~~~~~ 267 (307)
T 1vbk_A 247 --------V------------------L---KLIRDFGVKGVIKGLRPND 267 (307)
T ss_dssp --------H------------------H---HHHHHHTCCEEECCCCGGG
T ss_pred --------H------------------H---HHHHHcCCCEEEECcccch
Confidence 0 0 4566789999999998654
No 49
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=96.69 E-value=0.0037 Score=57.68 Aligned_cols=59 Identities=8% Similarity=0.169 Sum_probs=45.7
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcccccccccCCcceeEEeecCC--CCcHHHHHHHHHHhCCCceEEEec
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFT 295 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~vA~~lg~~~~~~~~~ 295 (420)
.++.+.+| |.||++++.++.+.. .++..+++...- .....+++++++.+|++++.+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~----------~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~ 115 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLN----------RNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPD 115 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHC----------TTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCC
T ss_pred CCEEEEee-cHHHHHHHHHHHHhC----------CCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCC
Confidence 57899999 999999999998763 466677764432 235688999999999998876543
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0087 Score=56.03 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=61.3
Q ss_pred cceeEEecCCcchHHHHHHHHHHhccc----------cc--ccccCCcceeEEeecCC-C-CcHHHHHHHHHHhCCCceE
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAGT----------KA--ARQWGTQLHSFCVGLEG-S-PDLKYAKEVADYLGTVHHE 291 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~~----------~~--~~~~~~~~~~~t~~~~~-~-~d~~~A~~vA~~lg~~~~~ 291 (420)
.++.+.+|||.||++++.++.+.+... +. .+..+.++..+++.... . ...++++++++.+|++++.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v 133 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYE 133 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 479999999999999999988764210 00 00001356677664432 2 2468899999999998766
Q ss_pred EEechhhhHHHHHHHHHhhccCCcccccchhHHHHHHHHHHh-cCCEEEEeccCCccccc
Q 014715 292 FHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKS-LGVKMVISGEGSDEIFG 350 (420)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~-~g~~v~ltG~GgDelf~ 350 (420)
+..... .. . .+.. .+.+.++. .+.+++++|.-.||-.+
T Consensus 134 ~~~~~~--~~------------~--~l~~-----~~~~~~k~~p~~~aii~G~Rrdds~~ 172 (306)
T 2wsi_A 134 SQRQSG--AS------------V--NMAD-----AFRDFIKIYPETEAIVIGIRHTDPFG 172 (306)
T ss_dssp CCC-------------------C--CHHH-----HHHHHHHHCTTCCEEECCCCCCSSSC
T ss_pred EeCCcc--cc------------c--cHHH-----HHHHHHhhCCCCcEEEEEEecccccc
Confidence 543210 00 0 0000 01111222 46789999999998664
No 51
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=93.21 E-value=0.078 Score=49.11 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=40.4
Q ss_pred cceeEEecCCcchHHHHHHHHHHhcc-----cccc------ccc-CCcceeEEeecCC-CCc-HHHHHHHHHHhCCCceE
Q 014715 226 VPFGVLLSGGLDSSLVASITARHLAG-----TKAA------RQW-GTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHE 291 (420)
Q Consensus 226 ~~v~~~LSGGlDSs~iaa~~~~~~~~-----~~~~------~~~-~~~~~~~t~~~~~-~~d-~~~A~~vA~~lg~~~~~ 291 (420)
..+++.+|||.||++++.++.+.+.. .+.+ +.. ..++..+.+...- .+| .++..++++++|++.+.
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v 138 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYE 138 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEE
Confidence 35899999999999999998876410 0000 000 0245566654432 244 46889999999986544
No 52
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=26.31 E-value=2.7e+02 Score=24.27 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCEEEEeccCCc---cccccccc
Q 014715 324 MFLMSRKIKSLGVKMVISGEGSD---EIFGGYLY 354 (420)
Q Consensus 324 ~~~l~~~a~~~g~~v~ltG~GgD---elf~Gy~~ 354 (420)
..-+.+.+...|..|+++|..+| ++|++...
T Consensus 105 v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~ 138 (234)
T 2orv_A 105 IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILN 138 (234)
T ss_dssp HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGG
T ss_pred HHHHHHHHHhCCCEEEEEecccccccCCcccHHH
Confidence 34456666778999999999988 56666543
No 53
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=23.40 E-value=64 Score=36.29 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=23.6
Q ss_pred EEEEEEEcCCCCch-HHHHHHHHHHHhcccCC
Q 014715 2 CGILAVLGCSDDSQ-AKRVRVLELSRRLKHRG 32 (420)
Q Consensus 2 cGI~G~~~~~~~~~-~~~~~~~~~~~~l~~RG 32 (420)
|||.++.+.++.+. ...+....++..|.|||
T Consensus 1 CGvg~va~~~G~~sh~iv~~al~~L~~m~HRG 32 (1520)
T 1ofd_A 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRG 32 (1520)
T ss_dssp CEEEEEECSSSCCBSHHHHHHHHHHHHTGGGS
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccC
Confidence 99999998877654 23344567788999999
No 54
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=20.34 E-value=77 Score=35.60 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=24.2
Q ss_pred EEEEEEEcCCCCchH-HHHHHHHHHHhcccCCC
Q 014715 2 CGILAVLGCSDDSQA-KRVRVLELSRRLKHRGP 33 (420)
Q Consensus 2 cGI~G~~~~~~~~~~-~~~~~~~~~~~l~~RGp 33 (420)
|||.++.+.++.+.. ..+....++..|.|||-
T Consensus 1 CGvg~va~~~G~~sh~~v~~al~aL~~m~HRG~ 33 (1479)
T 1ea0_A 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGA 33 (1479)
T ss_dssp CEECEEEETTCCCBHHHHHHHHHHHTSCGGGSC
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccCc
Confidence 999999988776642 23445677889999986
Done!