Query 014716
Match_columns 420
No_of_seqs 356 out of 2663
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 16:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 3.5E-18 1.2E-22 168.3 25.8 182 199-399 245-434 (451)
2 3o7q_A L-fucose-proton symport 99.8 8.2E-18 2.8E-22 165.1 17.5 174 198-391 250-425 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.7 5.4E-17 1.8E-21 162.0 16.4 182 208-404 285-477 (491)
4 4gc0_A D-xylose-proton symport 99.7 1.1E-16 3.8E-21 159.7 14.2 197 202-411 272-475 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.6 1.1E-14 3.6E-19 145.3 19.9 175 206-399 13-197 (491)
6 2cfq_A Lactose permease; trans 99.6 1.3E-15 4.3E-20 149.2 11.3 180 199-397 213-398 (417)
7 1pw4_A Glycerol-3-phosphate tr 99.6 5.3E-15 1.8E-19 145.5 14.7 176 205-399 27-207 (451)
8 2gfp_A EMRD, multidrug resista 99.6 8E-16 2.7E-20 148.0 5.6 163 200-384 193-362 (375)
9 3o7q_A L-fucose-proton symport 99.5 1.4E-13 4.8E-18 134.8 18.2 180 209-395 29-226 (438)
10 2xut_A Proton/peptide symporte 99.5 3.5E-13 1.2E-17 135.4 16.1 171 206-395 12-195 (524)
11 2gfp_A EMRD, multidrug resista 99.5 1.6E-13 5.4E-18 131.9 11.0 165 211-394 5-170 (375)
12 2xut_A Proton/peptide symporte 99.3 1.2E-11 4.1E-16 124.2 15.7 150 242-404 336-508 (524)
13 4gc0_A D-xylose-proton symport 99.2 3.7E-11 1.3E-15 119.4 12.5 156 226-392 32-214 (491)
14 2cfq_A Lactose permease; trans 99.1 3.3E-11 1.1E-15 117.7 2.7 171 201-391 2-180 (417)
15 2knc_B Integrin beta-3; transm 48.3 67 0.0023 22.4 6.8 21 377-397 11-31 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.82 E-value=3.5e-18 Score=168.32 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=149.5
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhH--hhhcCCC
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIV--LHRMGWE 275 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~--~~~~~~~ 275 (420)
.++.++++.+|...+..++.......+..++|.+.++ .|+++.+++++.+...++..+++++.|+++||+ ++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~----- 319 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN----- 319 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-----
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 4677889999999998888887778888999999988 599999999999999999999999999999998 43
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhc---CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhh-HHHH
Q 014716 276 RPSFIAITLATMS-VGHIVVASG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPV-GSYV 350 (420)
Q Consensus 276 r~~~~~i~~~~~~-~~~l~l~~~---~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~ 350 (420)
| ..+.++..+.. ++++++... +...+.+..++.|++.+...+...+++.|.+|+++||+++|+.+....+ |. .
T Consensus 320 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-~ 397 (451)
T 1pw4_A 320 R-GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS-V 397 (451)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH-H
T ss_pred c-hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH-H
Confidence 2 33444444444 555554422 3344666777888888888888899999999999999999999999999 98 5
Q ss_pred hhhHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 351 CSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 351 ~~~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
++|.+.|.+.|..| |+..|++.+++++++.++.+++.
T Consensus 398 ~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 398 AASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999887 99999999998888877665543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.76 E-value=8.2e-18 Score=165.14 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=142.3
Q ss_pred cHHHHhhCHHHHHHHHHHHHhcccchhhhccHHHH-HHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCC
Q 014716 198 NILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQI-GESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWE 275 (420)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~ 275 (420)
+.++.+|++.+|...+..++.......+..++|.| .++. |++..+++...+...++..+++++.|+++||+ +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~------~ 323 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF------A 323 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------C
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------c
Confidence 35778899999999998888888778888899999 8887 99999999999999999999999999999999 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHH
Q 014716 276 RPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 276 r~~~~~i~~~~~~~~~l~l~~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
|+..+.++.++.+++.+++............++.|++.+..++...++..|.+|++ ++++.++.. ...+|. .++|.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~-~~~~~~ 400 (438)
T 3o7q_A 324 PHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGG-GIVTPV 400 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHH-HHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHH-HHHHHH
Confidence 66777777777777776666444334455567889999999999999999999966 888888887 455887 588999
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 391 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~ 391 (420)
.|.+.|..|+ |+..|++.+++.++.
T Consensus 401 ~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 401 MGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred HHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 9999999886 777887765544443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.72 E-value=5.4e-17 Score=162.00 Aligned_cols=182 Identities=13% Similarity=0.025 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhcccchhhhccHHHHHHHc-CCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHH
Q 014716 208 FWLLFVAMLCGMGSGLATVNNISQIGESL-GYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLAT 286 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~ 286 (420)
.+..++..++...........++.+.++. +.+....+...+...++..++.++.|+++||++||+. .+...+.++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHH
Confidence 34444444444444455667788888775 7776788888899999999999999999999977653 333444566666
Q ss_pred HHHHHHHHHh----------cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHH
Q 014716 287 MSVGHIVVAS----------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRII 356 (420)
Q Consensus 287 ~~~~~l~l~~----------~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~ 356 (420)
.+++++++.. .+...+.+..++.|++.+...+..++++.|.+|++.||++.|+.+....+|. .+++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~i~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS-ALNAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH-HHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 6666554432 1344566778888999999899999999999999999999999999999999 5788888
Q ss_pred HHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014716 357 GYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRR 404 (420)
Q Consensus 357 g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 404 (420)
+.+.+. + +...|++.+++++++.++.++..++.++
T Consensus 443 ~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 443 TLYNAK-S------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGS-S------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHhcc-c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877653 3 6678888888888777666554444433
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.70 E-value=1.1e-16 Score=159.66 Aligned_cols=197 Identities=11% Similarity=0.031 Sum_probs=131.4
Q ss_pred HhhCHHHHHHHHHH-HHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHH
Q 014716 202 SVCTLNFWLLFVAM-LCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 280 (420)
Q Consensus 202 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~ 280 (420)
.++.+......... +........+..+.+++.+..+.+...........++...++.++++++.||+ +||..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~------Grr~~~ 345 (491)
T 4gc0_A 272 MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF------GRKPLQ 345 (491)
T ss_dssp HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CSHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh------cCcchh
Confidence 33444444333333 33333444566677788888888877777777888899999999999999999 666777
Q ss_pred HHHHHHHHHHHHHHH----hcCchh-HHHHHHHHHHhhh-hhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhH
Q 014716 281 AITLATMSVGHIVVA----SGFPGN-LYVGSIIVGVCYG-CQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVR 354 (420)
Q Consensus 281 ~i~~~~~~~~~l~l~----~~~~~~-l~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 354 (420)
..+....+++++.+. ...... ..+...+...+++ ...+..+.+.+|+||++.|+++.|+.+..+.+++. +++.
T Consensus 346 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~-i~~~ 424 (491)
T 4gc0_A 346 IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY-FVSW 424 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH-HHHT
T ss_pred ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 777776666665543 122222 2222233333333 33456778999999999999999999999999884 6677
Q ss_pred HHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014716 355 IIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVVL 411 (420)
Q Consensus 355 l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (420)
+.+.+.+.... .....+..+|++.+++++++.++.+++.+|||++..|+.+
T Consensus 425 ~~p~l~~~~~~------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 425 TFPMMDKNSWL------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHHHHCHHHHH------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 77665443210 0000044688999999999998888888899887655543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.63 E-value=1.1e-14 Score=145.28 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHH------cCCCccchhHHHHHHHHHHHHhHhhhhhhhHh-HhhhcCCChhH
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGES------LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERPS 278 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr-~~~~~~~~r~~ 278 (420)
+.+|..+...++.....+.+..+++.++++ +|.+..+.+++.+.+.++..++.+++|+++|| + +||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~------g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII------GARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------CHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cchH
Confidence 456777777777766667777777777765 79999999999999999999999999999999 8 7778
Q ss_pred HHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCc--hHHHHHHHHHHhhhHHHHhhhHH
Q 014716 279 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH--MGTIFNTIAIASPVGSYVCSVRI 355 (420)
Q Consensus 279 ~~~i~~~~~~~~~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~~~~~l 355 (420)
.+.++.++.+++.+++. ..+...+++..++.|++.|...+...++++|.+|+++ |+.++++.+.+..+|. +++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA-FIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH-HHHHHH
Confidence 88999999888888877 5566778899999999999999999999999999988 8888888999999999 589999
Q ss_pred HHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 356 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 356 ~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.+.+.+..+ |++.|++.++.+++++++.+...
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999887 99999998887777776654443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.62 E-value=1.3e-15 Score=149.21 Aligned_cols=180 Identities=12% Similarity=0.073 Sum_probs=134.7
Q ss_pred HHHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHHc-C---CCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCC
Q 014716 199 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-G---YPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 274 (420)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g---~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~ 274 (420)
.++.++++++|..++..++.......+..++|.++++. + .+....+...++..++..++.++.|+++||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------ 286 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI------ 286 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 35678899998877665544444444556688777654 3 2233456677778888899999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHH-HHHhhhHHHHhh
Q 014716 275 ERPSFIAITLATMSVGHIVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCS 352 (420)
Q Consensus 275 ~r~~~~~i~~~~~~~~~l~l~~-~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~ 352 (420)
+|+..+.++..+.+++.+.+.. .+...+.+..++.+++.+...+....+++|.+|++.||+++++. +.+..+|. +++
T Consensus 287 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~-~~g 365 (417)
T 2cfq_A 287 GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM-IFM 365 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHH-HHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHH-HHh
Confidence 6666677777777776665553 33444555566677777777777889999999999999999995 88888998 589
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~ 397 (420)
|.+.|.+.|..+ |...|.+.+++++++.++.+.
T Consensus 366 p~l~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 366 SVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp THHHHTHHHHSH------------HHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHh
Confidence 999999999877 888999988888887765443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.61 E-value=5.3e-15 Score=145.47 Aligned_cols=176 Identities=15% Similarity=0.087 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHH
Q 014716 205 TLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITL 284 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~ 284 (420)
.+.++..++..++.......+...+|.+.++. .+..+.+++.+...++..++.+++|+++||+ +||.++.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc------CchHHHHHHH
Confidence 34555666666666555556677788888899 9999999999999999999999999999999 7778888888
Q ss_pred HHHHHHHHHHHh-----cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHH
Q 014716 285 ATMSVGHIVVAS-----GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYI 359 (420)
Q Consensus 285 ~~~~~~~l~l~~-----~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l 359 (420)
++.+++.+++.. .+...+++..++.|++.+...+...+++.|.+|+++|+++.|+.+.+..+|. +++|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888888877653 4566788899999999999999999999999999999999999999999999 5899999998
Q ss_pred HHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014716 360 YDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 399 (420)
Q Consensus 360 ~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~~~~~ 399 (420)
.+..++ |+++|++.++++++..++.++..
T Consensus 179 ~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 179 MAWFND-----------WHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHTCC-----------STTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcc-----------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 877664 99999999888877766554443
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.58 E-value=8e-16 Score=147.98 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=126.5
Q ss_pred HHHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhH
Q 014716 200 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 278 (420)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~ 278 (420)
++.+|++.+|...+..++.......+..+.|.+.++ .|+++.+++...+...++..+++++.|+++||++ ++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~------~~~ 266 (375)
T 2gfp_A 193 KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS------TLM 266 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHH------HHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 567788899998888888777777788888888877 5999889999999999999999999999999984 322
Q ss_pred HHHHHHHH-HHHHHH--HHHh---cCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhh
Q 014716 279 FIAITLAT-MSVGHI--VVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 279 ~~~i~~~~-~~~~~l--~l~~---~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
..+..+ ...+.. .... .+...+.+..++.|++.+..++...+++.|.+| +++|++.|+.+....+|. .++
T Consensus 267 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~-~~~ 342 (375)
T 2gfp_A 267 --WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS-GVL 342 (375)
T ss_dssp --HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH-HCC
T ss_pred --HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH-HHH
Confidence 222222 222211 1111 233445567788899999999999999999999 899999999999999999 588
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIM 384 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~ 384 (420)
|.+.|.+.+..+ |...+++.
T Consensus 343 ~~~~g~l~~~~~------------~~~~~~~~ 362 (375)
T 2gfp_A 343 ASLSAMLPQTGQ------------GSLGLLMT 362 (375)
T ss_dssp STTCTHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHhcCCc------------ccHHHHHH
Confidence 999999988766 77666654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.55 E-value=1.4e-13 Score=134.83 Aligned_cols=180 Identities=11% Similarity=0.047 Sum_probs=140.1
Q ss_pred HHHHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHH
Q 014716 209 WLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMS 288 (420)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~ 288 (420)
+.+.+..++...........+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+ +||+.+.++.++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~------g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL------SYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------cchHHHHHHHHHHH
Confidence 334444444444444566678888889999999999999999999999999999999999 77788999999998
Q ss_pred HHHHHH---H-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhc
Q 014716 289 VGHIVV---A-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVA 364 (420)
Q Consensus 289 ~~~l~l---~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g 364 (420)
++.++. . ..+...+++..++.|++.|...+...++++|.+|+++|+.+.|+.+.+..+|. +++|.+.+.+.+...
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA-IIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH-HHHHHHTTHHHHTSS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccc
Confidence 888877 4 45667788999999999999999999999999999999999999999999999 589999998883332
Q ss_pred CCCCC--------------ccccccccHHHHHHHHHHHHHHHHHH
Q 014716 365 SGEGN--------------SCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 365 ~~~~~--------------~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
+.... .....+.|++.|++.++++++..++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 10000 00001127888887777666655443
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.49 E-value=3.5e-13 Score=135.44 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhcccchhhhccHHHHHHH-cC------CCccchhHHHHHHHHHHHHhHhhhhhhhHhH-hhhcCCChh
Q 014716 206 LNFWLLFVAMLCGMGSGLATVNNISQIGES-LG------YPTSAINSLVSLWSIWNFLGRFGGGYVSDIV-LHRMGWERP 277 (420)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~-~~~~~~~r~ 277 (420)
+.+|.+++..++.....++...+++.++++ .| ++..+++++.+.+.++..++.+++|+++||+ |||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------ 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------ 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 466777777777766666777778877664 58 9999999999999999999999999999998 643
Q ss_pred HHHHHHHHHHHHHHHHHH-hc-CchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHH---HHHHhhhHHHHhh
Q 014716 278 SFIAITLATMSVGHIVVA-SG-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNT---IAIASPVGSYVCS 352 (420)
Q Consensus 278 ~~~~i~~~~~~~~~l~l~-~~-~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g~~~~~ 352 (420)
..+.++.++.+++.+++. .. +...+++..++.|++.+...+...+++.|.+|+++|++..+. .+.+..+|. +++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~-~~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS-FFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH-HHH
Confidence 556777777777777766 44 566788889999999999999999999999999999766655 888899998 588
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVA 395 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~~~~ 395 (420)
|.+.|.+.+..+ |++.|++.+++.+++.++.
T Consensus 165 ~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 165 SLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHH
Confidence 999999988777 9999999888877666543
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.47 E-value=1.6e-13 Score=131.86 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=138.1
Q ss_pred HHHHHHHhcccchhhhccHHHHHHHcCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHH
Q 014716 211 LFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVG 290 (420)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~ 290 (420)
+++..++.......+...+|.+.+++|.+..+.++..+...++..++.++.|+++||+| ||+.+.++..+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG------RRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC------CCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CchhHHHHHHHHHHH
Confidence 34444555444555666788888888999999999999999999999999999999994 445567777777777
Q ss_pred HHHHH-hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCC
Q 014716 291 HIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGN 369 (420)
Q Consensus 291 ~l~l~-~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~ 369 (420)
.+++. .++...+++..++.|++.+...+...+++.|.+|+++|+++.++.+.+..+|. +++|.+.+.+.+..+
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~----- 152 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-LLAPLIGGLLDTMWN----- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH-HHHHHHHHHSSCHHH-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcc-----
Confidence 77665 45566788889999999999999999999999999999999999999999999 589999999988777
Q ss_pred ccccccccHHHHHHHHHHHHHHHHH
Q 014716 370 SCNGTHCFMLSFLIMASVAFVGCLV 394 (420)
Q Consensus 370 ~c~g~~~~~~~f~i~~~~~~~~~~~ 394 (420)
|++.|++.+++.++..+.
T Consensus 153 -------~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 153 -------WRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 999999888877776653
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.34 E-value=1.2e-11 Score=124.17 Aligned_cols=150 Identities=11% Similarity=-0.001 Sum_probs=96.1
Q ss_pred chhHHHHHHHHHHHHhHhhhhhhh----HhHhhhcCCChhHHHHHHHHHHHHHHHHHHh----------cCchhHHHHHH
Q 014716 242 AINSLVSLWSIWNFLGRFGGGYVS----DIVLHRMGWERPSFIAITLATMSVGHIVVAS----------GFPGNLYVGSI 307 (420)
Q Consensus 242 ~~~~~~~~~~~~~~ig~~~~G~ls----Dr~~~~~~~~r~~~~~i~~~~~~~~~l~l~~----------~~~~~l~~~~~ 307 (420)
..+.+.+...++..++.++.+++. ||.++|. +++..+.++.++.+++++++.. .+...+.+..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL--TALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYA 413 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC--------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 355555555556666666666654 3332221 2334556677777777665542 13344667788
Q ss_pred HHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHHHHHhhcCCCCCcccccccc---------H
Q 014716 308 IVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCF---------M 378 (420)
Q Consensus 308 l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~l~~~~g~~~~~~c~g~~~~---------~ 378 (420)
+.|++.+...+...+++.|.+|++.||+++|+.++...+|. .++|.+.|.+.+..+. .| +
T Consensus 414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~g~~~~g~~~~~~~~----------~~~~~~~~~~~~ 482 (524)
T 2xut_A 414 LLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGN-LWVLLANVSVKSPTVT----------EQIVQTGMSVTA 482 (524)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHH-HHHHHHHHHTTSCHHH----------HHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhcccccc----------cccccccccccc
Confidence 88999999999999999999999999999999999999999 5889999988774310 02 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014716 379 LSFLIMASVAFVGCLVAFLLFIRTRR 404 (420)
Q Consensus 379 ~~f~i~~~~~~~~~~~~~~~~~~~~~ 404 (420)
..|++.+++++++.++.+++.+++++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
T 2xut_A 483 FQMFFFAGFAILAAIVFALYARSYQM 508 (524)
T ss_dssp HHHHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34777777777777665555444443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.24 E-value=3.7e-11 Score=119.43 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=114.9
Q ss_pred hccHHHHHHHcCC----C----ccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHHHHHHHHHHHHHHHHHH--
Q 014716 226 VNNISQIGESLGY----P----TSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-- 295 (420)
Q Consensus 226 ~~~~~~~~~~~g~----s----~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~~~i~~~~~~~~~l~l~-- 295 (420)
...+|.+.++.+. + +...+++.+.+.++..+|.+++|+++||+ |||+.+.++.+++.++.++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~------GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF------GRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666554432 1 23456788889999999999999999999 788889999999998888765
Q ss_pred -----------------hcCchhHHHHHHHHHHhhhhhhhhHHHHHHHhhCCCchHHHHHHHHHHhhhHHHHhhhHHHHH
Q 014716 296 -----------------SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGY 358 (420)
Q Consensus 296 -----------------~~~~~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~l~g~ 358 (420)
..+...+++.+++.|++.|+..+..+.+++|..|++.|+...++.+.+..+|. +.++.+...
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~-~~~~~~~~~ 184 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQ-LLVYCVNYF 184 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhh-hhhhhcchh
Confidence 23456689999999999999999999999999999999999999999999998 466555554
Q ss_pred HHHhhcCCCCCccccccccHHHHHHHHHHHHHHH
Q 014716 359 IYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGC 392 (420)
Q Consensus 359 l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~~ 392 (420)
+.+..+. .-.+...|+..+.+.....++..
T Consensus 185 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 185 IARSGDA----SWLNTDGWRYMFASECIPALLFL 214 (491)
T ss_dssp HHTTSCT----TTTTTTHHHHHHHTTHHHHHHHH
T ss_pred hcccccc----ccccchhhHHHhhhhhhhhhhhh
Confidence 4433221 11122336666655544444433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.07 E-value=3.3e-11 Score=117.67 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=111.9
Q ss_pred HHhhCHHHHHHHHHHHHhcccchhhhccHHHHHHH-cCCCccchhHHHHHHHHHHHHhHhhhhhhhHhHhhhcCCChhHH
Q 014716 201 QSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSF 279 (420)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~G~lsDr~~~~~~~~r~~~ 279 (420)
+.+|++++|.+....++.......+...+|.++++ .|+++.+++++.+...++..++++++|+++||+| ||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~G------rr~~ 75 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG------LRKY 75 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTST------TCCH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------chHH
Confidence 35789999988887777766666677788888876 5999999999999999999999999999999995 4444
Q ss_pred HHHHHHHHHHH---HHHHHh-cCc-hhHHHHHHHHHHhhhhhhhhHHHHHHHhhCC--CchHHHHHHHHHHhhhHHHHhh
Q 014716 280 IAITLATMSVG---HIVVAS-GFP-GNLYVGSIIVGVCYGCQWSLMPTITYEIFGV--GHMGTIFNTIAIASPVGSYVCS 352 (420)
Q Consensus 280 ~~i~~~~~~~~---~l~l~~-~~~-~~l~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~ 352 (420)
+.++..+.+++ ...... ... ........+.+++.|..++.....+.+..++ ++++..+|..+.+..+|. .++
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~ 154 (417)
T 2cfq_A 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW-ALG 154 (417)
T ss_dssp HHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHH
Confidence 55555444331 111110 000 0112223333333333333223333333322 356777888888888888 588
Q ss_pred hHHHHHHHHhhcCCCCCccccccccHHHHHHHHHHHHHH
Q 014716 353 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 391 (420)
Q Consensus 353 ~~l~g~l~~~~g~~~~~~c~g~~~~~~~f~i~~~~~~~~ 391 (420)
|.+.+.+.+ .+ |+..|++.++..++.
T Consensus 155 ~~l~~~l~~-~~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 155 ASIVGIMFT-IN------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHH-HC------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHH-hc------------hhHHHHHHHHHHHHH
Confidence 999999887 45 888888766554433
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=48.33 E-value=67 Score=22.41 Aligned_cols=21 Identities=10% Similarity=0.426 Sum_probs=11.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 014716 377 FMLSFLIMASVAFVGCLVAFL 397 (420)
Q Consensus 377 ~~~~f~i~~~~~~~~~~~~~~ 397 (420)
+.....+.+++.++++++.++
T Consensus 11 ~~Iv~gvi~gilliGllllli 31 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLI 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 444445555666666555433
Done!