Query 014718
Match_columns 419
No_of_seqs 144 out of 379
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 16:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014718.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014718hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 43.6 12 0.00086 30.1 4.4 28 249-277 17-44 (118)
2 d1oqya2 a.5.2.1 (A:317-360) DN 38.5 2.1 0.00015 29.2 -0.9 26 253-278 1-30 (44)
3 d2ihoa2 d.3.1.18 (A:156-293) A 32.0 2.3 0.00017 34.9 -1.8 34 21-54 31-69 (138)
4 d2g7ja1 d.198.5.1 (A:1-112) Pu 29.6 10 0.00073 29.9 1.7 19 252-270 3-21 (112)
5 d1wgla_ a.5.2.4 (A:) Toll-inte 22.0 9.9 0.00072 27.1 0.3 47 283-334 10-56 (59)
6 d1jjcb2 a.6.1.1 (B:400-474) Do 20.4 31 0.0022 24.8 2.8 24 243-267 12-35 (75)
7 d1vjna_ d.157.1.4 (A:) Hypothe 20.2 63 0.0046 26.9 5.3 41 8-54 143-184 (209)
8 d1sfsa_ c.1.8.8 (A:) Unnamed h 19.1 24 0.0017 30.9 2.3 21 257-277 81-101 (213)
9 d1mn3a_ a.5.2.4 (A:) Vacuolar 19.0 12 0.0009 26.1 0.2 14 284-297 14-27 (54)
10 d2f3na1 a.60.1.2 (A:2-65) Sh3 16.6 29 0.0021 23.6 1.8 23 253-275 5-27 (64)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=43.57 E-value=12 Score=30.13 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeec
Q 014718 249 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 277 (419)
Q Consensus 249 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 277 (419)
+|||||||+...|+.|==+.+. .||..+
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~ 44 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEc
Confidence 6999999999999999765554 455533
No 2
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.47 E-value=2.1 Score=29.24 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=18.2
Q ss_pred CHHHHHH--HHHHhCCCCCc--EEEEeece
Q 014718 253 TPEEAVL--MLAALGFNRKT--HVFVAGAQ 278 (419)
Q Consensus 253 tPeEvgl--~L~alGf~~~T--~IYlA~ge 278 (419)
||+|..- =|.+|||+++. ..|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 5666544 48899999996 55777553
No 3
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=32.00 E-value=2.3 Score=34.90 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=28.4
Q ss_pred eEeeccccCCCcccCC-----CCCCCcCchHHHHHhccC
Q 014718 21 TLVVPKFMYSSVWRDV-----SQFSDIYQEEHFINYLTP 54 (419)
Q Consensus 21 TLViP~l~~~s~w~D~-----S~F~DIfD~dhFI~~L~~ 54 (419)
-||+|...-++.|+++ ..=+.|||-|.|--..|.
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~Ka 69 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKA 69 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHH
Confidence 4899999999999985 456789999999876654
No 4
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=29.59 E-value=10 Score=29.93 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 014718 252 LTPEEAVLMLAALGFNRKT 270 (419)
Q Consensus 252 LtPeEvgl~L~alGf~~~T 270 (419)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLe~aGF~~d~ 21 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVDV 21 (112)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 7799999999999997663
No 5
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.05 E-value=9.9 Score=27.14 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=27.3
Q ss_pred ccccchhHhhCCCccccccCCCccccccccccccccchhheeeeccCceeee
Q 014718 283 TRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAM 334 (419)
Q Consensus 283 ~~~L~pL~~~FPnl~tKe~L~s~~EL~pf~~~ss~laALDy~Vc~~SDvFv~ 334 (419)
+..+.-|++|||++-.. .+ ..=|.. +....-+|+|=+....-+.|-|
T Consensus 10 Ee~i~~LkeMFP~~D~~-vI--~~VL~a--~~G~vd~aid~LL~Msd~~~gp 56 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQE-VI--RSVLEA--QRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp HHHHHHHHHHCSSSCHH-HH--HHHHTT--TTTCHHHHHHHHHHSSCCCCSC
T ss_pred HHHHHHHHHHCCCCCHH-HH--HHHHHH--cCCCHHHHHHHHHhcCCCCcCC
Confidence 46689999999998432 22 111111 2234457777666666666544
No 6
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=20.35 E-value=31 Score=24.83 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=20.3
Q ss_pred hhhcCCCCCCCHHHHHHHHHHhCCC
Q 014718 243 EIRSEGLCPLTPEEAVLMLAALGFN 267 (419)
Q Consensus 243 ~~R~~G~CPLtPeEvgl~L~alGf~ 267 (419)
..+..|.. ++++|+.-+|+.|||.
T Consensus 12 i~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 12 ANRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHHhCCC-CCHHHHHHHHHHcCCc
Confidence 44566766 9999999999999995
No 7
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=20.16 E-value=63 Score=26.85 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcceEeeccccCCCcccC-CCCCCCcCchHHHHHhccC
Q 014718 8 ICNAVVLARLLNATLVVPKFMYSSVWRD-VSQFSDIYQEEHFINYLTP 54 (419)
Q Consensus 8 IcDaVaVARlLNATLViP~l~~~s~w~D-~S~F~DIfD~dhFI~~L~~ 54 (419)
--+|+-+|+.|++-.|||-= |+. ...| ++=..|.|++.++.
T Consensus 143 ~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 143 PKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp HHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhh
Confidence 35789999999999999963 432 2222 45567889888764
No 8
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=19.15 E-value=24 Score=30.86 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCCCcEEEEeec
Q 014718 257 AVLMLAALGFNRKTHVFVAGA 277 (419)
Q Consensus 257 vgl~L~alGf~~~T~IYlA~g 277 (419)
+.-.-++||||.+|.||++--
T Consensus 81 A~~~A~~lGfp~gt~Iy~dve 101 (213)
T d1sfsa_ 81 AVFHARRLGIPKNKLLFANIE 101 (213)
T ss_dssp HHHHHHHTTCCSSCEEEEECC
T ss_pred HHHHHHHcCCCCCCEEEEEec
Confidence 334678899999999999854
No 9
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.97 E-value=12 Score=26.15 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.5
Q ss_pred cccchhHhhCCCcc
Q 014718 284 RRLGALNSLYPYLV 297 (419)
Q Consensus 284 ~~L~pL~~~FPnl~ 297 (419)
..+.-|++|||++-
T Consensus 14 e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCCC
Confidence 45788999999983
No 10
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=16.63 E-value=29 Score=23.56 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhCCCCCcEEEEe
Q 014718 253 TPEEAVLMLAALGFNRKTHVFVA 275 (419)
Q Consensus 253 tPeEvgl~L~alGf~~~T~IYlA 275 (419)
||+||+-.|+.+|++.=..++..
T Consensus 5 s~~~V~~wL~~~gl~~y~~~F~~ 27 (64)
T d2f3na1 5 SKFDVGDWLESIHLGEHRDRFED 27 (64)
T ss_dssp CHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999999999999876666644
Done!