BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014721
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q0Y|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_295895.1) From Ralstonia Eutropha Jmp134 At 1.80 A
Resolution
Length = 153
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 109 PPKP-LPVYTKLAYILGLRVSPSHRRMGIGLKLVKRMEEWFRESGVEYSYI-ATE 161
PP P P+ K YIL L V PSHR GIG L R E F E G+ ++ + ATE
Sbjct: 76 PPHPSHPLQDKRGYILNLYVDPSHRERGIGQALXNRAEAEFAERGIAFAVLHATE 130
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 116 YTKLAYILGLRVSPSHRRMGIGLKLVKRMEEWFRESGVEYSYIATENDNYASVKLFTDKC 175
+ AYI + V +R +G+G +L+ + ++W +E + T+N+N A+ K F +KC
Sbjct: 97 WNNYAYIEDITVDKKYRTLGVGKRLIAQAKQWAKEGNXPGIXLETQNNNVAACK-FYEKC 155
Query: 176 GY 177
G+
Sbjct: 156 GF 157
>pdb|1VKC|A Chain A, Putative Acetyl Transferase From Pyrococcus Furiosus
pdb|1VKC|B Chain B, Putative Acetyl Transferase From Pyrococcus Furiosus
Length = 158
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 116 YTKLAYILGLRVSPSHRRMGIGLKLVKRMEEWFRESGVEYSYIATENDNYASVKLFTDKC 175
Y K+AYI + V R +GIG L+++ EEW +E G + + E DN +VK + ++
Sbjct: 88 YVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDN-PAVKWYEER- 145
Query: 176 GY 177
GY
Sbjct: 146 GY 147
>pdb|3DR8|A Chain A, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium With Its Cofactor Acetyl-Coa
pdb|3DR8|B Chain B, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium With Its Cofactor Acetyl-Coa
pdb|3DR6|A Chain A, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
pdb|3DR6|B Chain B, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
pdb|3DR6|C Chain C, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
Length = 174
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 127 VSPSHRRMGIGLKLVKRMEEWFRESGVEYSYIATENDNYASVKL 170
V P+H+ G+G KL+ R+ + R G E+ N AS++L
Sbjct: 90 VHPAHQGKGLGRKLLSRLIDEARRCGKHVXVAGIESQNAASIRL 133
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 50/153 (32%), Gaps = 40/153 (26%)
Query: 38 RRCEVGPS------GKLCLFTDLLGDPICRVRHSP------------AFLMLVAEVGDEI 79
R C +GP L LF GD +H P F+ L A + +
Sbjct: 28 RTCRLGPDQVKSMRAALDLFGREFGDVATYSQHQPDSDYLGNLLRSKTFIALAAFDQEAV 87
Query: 80 VGMIRGCIKTVTCGKRISRNTKYTTNDIEPPKPLPVYTKLAYILGLRVSPSHRRMGIGLK 139
VG + Y E P+ YI L VS HRR GI
Sbjct: 88 VGAL----------------AAYVLPKFEQPR------SEIYIYDLAVSGEHRRQGIATA 125
Query: 140 LVKRMEEWFRESGVEYSYIATENDNYASVKLFT 172
L+ ++ G Y+ + + +V L+T
Sbjct: 126 LINLLKHEANALGAYVIYVQADYGDDPAVALYT 158
>pdb|3JVN|A Chain A, Crystal Structure Of The Acetyltransferase Vf_1542 From
Vibrio Fischeri, Northeast Structural Genomics
Consortium Target Vfr136
Length = 166
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 23/118 (19%)
Query: 59 ICRVRHSPAFLMLVAEVGDEIVGMIRG--CIKTVTCGKRISRNTKYTTNDIEPPKPLPVY 116
I R P + VAE D I+G I G C T K + T
Sbjct: 47 IARYLDDPECXVYVAEXDDVIIGFITGHFCELISTVSKLVXXAT---------------- 90
Query: 117 TKLAYILGLRVSPSHRRMGIGLKLVKRMEEWFRESGVEYSYIATENDNYASVKLFTDK 174
I L + +RR G+ +L R+E+ ++ GV+ ++ + N +++ + +
Sbjct: 91 -----IDELYIEKEYRREGVAEQLXXRIEQELKDYGVKEIFVEVWDFNKGALEFYNKQ 143
>pdb|4EVY|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus In Complex With Tobramycin
pdb|4EVY|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus In Complex With Tobramycin
pdb|4F0Y|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus, Apo
pdb|4F0Y|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus, Apo
Length = 166
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 119 LAYILGLRVSPSHRRMGIGLKLVKRMEEWFRE 150
+ ++ G+ V P+HRR G+ L+++ E W ++
Sbjct: 95 VGFLEGIYVLPAHRRSGVATMLIRQAEVWAKQ 126
>pdb|2AE6|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|C Chain C, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|D Chain D, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
Length = 166
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 106 DIEPPKPLPVYTKLAYILGLRVSPSHRRMGIGLKLVKRMEEWFRESGVEYSYIATENDNY 165
++ PP L + K ++L + VSP + GIG L+ +++ SG+ + N
Sbjct: 69 EVHPPTSLAAHQK-QWLLSIGVSPDFQDQGIGGSLLSYIKDXAEISGIHKLSLRVXATNQ 127
Query: 166 ASVKLFTDKCGY 177
+++ F +K G+
Sbjct: 128 EAIR-FYEKHGF 138
>pdb|4E8O|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ih From Acinetobacter
Baumannii
pdb|4E8O|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ih From Acinetobacter
Baumannii
Length = 167
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 119 LAYILGLRVSPSHRRMGIGLKLVKRMEEWFRE 150
+A++ G+ V P +RR GI LV+++E W ++
Sbjct: 96 VAFLEGIFVLPEYRRSGIATGLVQQVEIWAKQ 127
>pdb|2X7J|A Chain A, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|B Chain B, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|C Chain C, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|D Chain D, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
Length = 604
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 316 EVFSPFGL--HFLYG----------LGGEGPRAAKLVKALCGHAHNLAKERGCGVVATEV 363
EV +P + HFL+G L E P+ + ++ L A A++R G V V
Sbjct: 136 EVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNV 195
Query: 364 SSREPL 369
REPL
Sbjct: 196 PLREPL 201
>pdb|1U6M|A Chain A, The Crystal Structure Of Acetyltransferase
pdb|1U6M|B Chain B, The Crystal Structure Of Acetyltransferase
pdb|1U6M|C Chain C, The Crystal Structure Of Acetyltransferase
pdb|1U6M|D Chain D, The Crystal Structure Of Acetyltransferase
Length = 199
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 121 YILGLRVSPSHRRMGIGLKLVKRMEEWFRESGVEYSYIATENDNYASVKLFTDKCGYSKF 180
Y+ + V R MGIG KL+ + E + SG + + + DN + KL+ K G+
Sbjct: 114 YLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASK-GFKDV 172
Query: 181 RTPSI 185
T +I
Sbjct: 173 TTMTI 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,860,799
Number of Sequences: 62578
Number of extensions: 550506
Number of successful extensions: 1008
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 13
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)