BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014723
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 257
C +C+ D+ + LR+LPC H+FHA CVD WL + RT CP+C+ D+ S+G
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRT-CPICRADSGPSSG 75
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 250
C +C EDY++GE +R LPC H FH C+ WL + CPVC++
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS-CPVCRK 60
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 251
C ICL GE +R LPC H FH CVD WL + + CP+C+ D
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVD 60
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 207 CAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCK 249
CA+CL + GE+ R LP C H FHA CVD WL S T CP+C+
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST-CPLCR 50
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 248
CA+CLED+ ++L I PC+H FH C+ WL R CP+C
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLC 58
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 74 NMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVS 133
+++ L RG SF DKVRNA K G +A I+Y+N DG L G S + AV ++
Sbjct: 112 DLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNT-DGKLNGTLGGSDASFVAAVGIT 170
Query: 134 KASGEKL 140
K G+ L
Sbjct: 171 KQEGDAL 177
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 61 ACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAG 120
A +N K + ++ L RG F+DK+ NA+KAG ++YDN+D G + +
Sbjct: 274 AYANRGMKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPN 333
Query: 121 NSAGIKIHAVFVSKASGEKLKQYAGST 147
++ A F+S+ G LK + T
Sbjct: 334 VD---QMPAAFISRKDGLLLKDNSKKT 357
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 16 RLASANVVLIGNNVTLSFDDIEANFAPAIRGSG-------DCGVLYVAEPLDACSNLTSK 68
RL A VL+ + L +D +A F+P +G+G +YV + N +SK
Sbjct: 445 RLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVTDK----DNTSSK 500
Query: 69 VEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNED 111
V ++N+S F +T+ + +K Q+ ++A + D D
Sbjct: 501 VH-LNNVSDKFEVTV----TVHNKSDKPQELYYQATVQTDKVD 538
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 182 SRRLVKAMPSLIFT----AVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW 237
S+ + A+P ++ T AV ++ C C IC +Y G+ LPC H FH CV W
Sbjct: 18 SKESIDALPEILVTEDHGAVGQEMC----CPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 238 LTSWRTFCPVCK 249
L T CPVC+
Sbjct: 74 LQKSGT-CPVCR 84
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256
C IC E + L C H F ++C++ W+ + CP+C++D ++ T
Sbjct: 56 CIICSEYFIEAVTLN---CAHSFCSYCINEWMKR-KIECPICRKDIKSKT 101
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256
C IC E + L C H F ++C++ W+ + CP+C++D ++ T
Sbjct: 56 CIICSEYFIEAVTLN---CAHSFCSYCINEWMKR-KIECPICRKDIKSKT 101
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 223 LPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256
L C H F ++C++ W+ + CP+C++D ++ T
Sbjct: 80 LNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT 112
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
C IC++ G ILPC H F C+D W R CP+C+
Sbjct: 18 CCICMD----GRADLILPCAHSFCQKCIDKWSDRHRN-CPICR 55
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 200 DNCTSRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTS-WRTFCPVC 248
+N + + C ICLED + +LPC H H C + L +R CP+C
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR--CPLC 49
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 207 CAICLED---YSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
C ICLED YS+ LPC H F C+ W+ T CP+CK
Sbjct: 8 CPICLEDPSNYSMA-----LPCLHAFCYVCITRWIRQNPT-CPLCK 47
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 194 FTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
F E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 17 FELXCEMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 199 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 19 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|3ICU|A Chain A, Protease-Associated Domain Of The E3 Ligase Grail
Length = 194
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 59 LDAC---SNLTSKVEKVSNMSSAFVLTIR--GGCSFEDKVRNAQKAGFEAAIVYDNEDDG 113
L+AC +N T S + +++ I+ GGC+F DK+ A + G A++++
Sbjct: 83 LNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTR 142
Query: 114 VLVAMAGNSAGIKIHAVFVSKASGEKLKQ 142
V + + I A+ + G K+ Q
Sbjct: 143 NEVIPMSHPGAVDIVAIMIGNLKGTKILQ 171
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 194 FTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
F E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 324 FELXCEMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 199 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
E T + C IC E+ + ++I PC H C+ +W S CP C+
Sbjct: 21 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 199 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 329 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 199 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 327 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 199 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
E T + C IC E+ + ++I PC H C+ SW S CP C+
Sbjct: 327 EMGSTFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 204 SRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLT-SWRTFCPVC 248
S C ICLED + +LPC H H C + L +R CP+C
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR--CPLC 49
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 225 CRHKFHAFCVDSWLTSWRTFCPVCKRD 251
C H FH C+ WL + R CP+ R+
Sbjct: 84 CNHAFHFHCISRWLKT-RQVCPLDNRE 109
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 225 CRHKFHAFCVDSWLTSWRTFCPVCKRD 251
C H FH C+ WL + R CP+ R+
Sbjct: 65 CNHAFHFHCISRWLKT-RQVCPLDNRE 90
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 225 CRHKFHAFCVDSWLTSWRTFCPVCKRD 251
C H FH C+ WL + R CP+ R+
Sbjct: 57 CNHAFHFHCISRWLKT-RQVCPLDNRE 82
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 225 CRHKFHAFCVDSWLTSWRTFCPVCKRD 251
C H FH C+ WL + R CP+ R+
Sbjct: 73 CNHAFHFHCISRWLKT-RQVCPLDNRE 98
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 225 CRHKFHAFCVDSWLTSWRTFCPVCKRD 251
C H FH C+ WL + R CP+ R+
Sbjct: 75 CNHAFHFHCISRWLKT-RQVCPLDNRE 100
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 225 CRHKFHAFCVDSWLTSWRTFCPVCKRD 251
C H FH C+ WL + R CP+ R+
Sbjct: 73 CNHAFHFHCISRWLKT-RQVCPLDNRE 98
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249
T + C IC E+ + ++I PC H C+ +W S CP C+
Sbjct: 337 TFQLCKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 250
C ICL+ + + C H+F A C+ + L S CP C++
Sbjct: 57 CPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRK 98
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 225 CRHKFHAFCVDSWLTSWRTFCPVCKRD 251
C H FH C+ WL + R CP+ R+
Sbjct: 67 CNHAFHFHCISRWLKT-RQVCPLDNRE 92
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 250
C ICL+ + + C H+F A C+ + L S CP C++
Sbjct: 37 CPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRK 78
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 225 CRHKFHAFCVDSWLTSWRTFCPVCKRD 251
C H FH C+ W+ CP+C++D
Sbjct: 48 CNHSFHNCCMSLWVKQ-NNRCPLCQQD 73
>pdb|3DT5|A Chain A, C_terminal Domain Of Protein Of Unknown Function Af_0924
From Archaeoglobus Fulgidus
Length = 135
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 185 LVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHA 231
L+KA S ++TA ED T C + LR+LP KF A
Sbjct: 30 LIKAFSSYVYTAQTEDEI--ETIITCRRYLAGNNLLRVLPXHFKFKA 74
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 250
C ICL+ + + C H+F A C+ + L S CP C++
Sbjct: 56 CPICLD--MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRK 97
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS------WRTFCPVCKRDA 252
C C +C ++L C FH +C+D L+S W +CP C+ DA
Sbjct: 172 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEW--YCPECRNDA 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,322,485
Number of Sequences: 62578
Number of extensions: 379331
Number of successful extensions: 881
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 59
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)