Query 014723
Match_columns 419
No_of_seqs 435 out of 2803
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 100.0 4.6E-51 9.9E-56 402.5 22.1 272 1-274 1-299 (348)
2 cd02123 PA_C_RZF_like PA_C-RZF 99.9 9.6E-22 2.1E-26 176.6 15.4 125 29-155 20-147 (153)
3 cd02126 PA_EDEM3_like PA_EDEM3 99.8 1.6E-20 3.5E-25 163.4 12.9 113 35-151 2-124 (126)
4 cd02127 PA_hPAP21_like PA_hPAP 99.8 1.9E-20 4.1E-25 161.1 13.2 108 39-150 1-112 (118)
5 cd02125 PA_VSR PA_VSR: Proteas 99.8 5.8E-20 1.3E-24 160.1 13.3 109 39-148 1-121 (127)
6 cd04813 PA_1 PA_1: Protease-as 99.8 7E-20 1.5E-24 157.3 11.3 105 35-146 5-111 (117)
7 cd02122 PA_GRAIL_like PA _GRAI 99.8 1.6E-19 3.5E-24 159.4 13.0 116 35-152 17-137 (138)
8 cd02132 PA_GO-like PA_GO-like: 99.8 3.5E-19 7.6E-24 157.6 12.4 112 28-147 14-132 (139)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.8 4.6E-18 9.9E-23 146.2 10.5 94 50-146 21-114 (120)
10 cd04818 PA_subtilisin_1 PA_sub 99.7 2.4E-17 5.1E-22 141.6 13.1 113 36-152 1-117 (118)
11 cd04816 PA_SaNapH_like PA_SaNa 99.7 7.6E-17 1.6E-21 139.4 13.2 109 37-148 5-116 (122)
12 cd02130 PA_ScAPY_like PA_ScAPY 99.7 7.2E-16 1.6E-20 133.2 12.9 112 32-151 8-120 (122)
13 KOG3920 Uncharacterized conser 99.6 2.3E-16 5E-21 138.4 3.2 117 24-144 38-161 (193)
14 cd04817 PA_VapT_like PA_VapT_l 99.6 7.8E-15 1.7E-19 129.5 11.8 102 39-147 26-134 (139)
15 COG5540 RING-finger-containing 99.6 1.4E-15 3.1E-20 145.9 3.9 53 202-254 321-373 (374)
16 cd02124 PA_PoS1_like PA_PoS1_l 99.5 3.3E-14 7.1E-19 124.3 10.0 88 53-147 35-122 (129)
17 PF02225 PA: PA domain; Inter 99.5 8.3E-15 1.8E-19 121.3 5.7 98 47-144 4-101 (101)
18 PF13639 zf-RING_2: Ring finge 99.4 7E-14 1.5E-18 99.3 1.9 44 205-249 1-44 (44)
19 cd00538 PA PA: Protease-associ 99.3 4.6E-12 9.9E-17 108.8 9.1 92 54-146 25-118 (126)
20 cd02133 PA_C5a_like PA_C5a_lik 99.3 3.3E-11 7.1E-16 107.0 12.3 100 38-146 15-114 (143)
21 COG5243 HRD1 HRD ubiquitin lig 99.3 7.1E-12 1.5E-16 123.4 6.8 78 178-259 264-352 (491)
22 KOG2442 Uncharacterized conser 99.1 6.9E-11 1.5E-15 120.4 7.8 111 34-151 56-173 (541)
23 PHA02929 N1R/p28-like protein; 99.1 4E-11 8.7E-16 114.5 4.5 74 179-253 148-227 (238)
24 cd04819 PA_2 PA_2: Protease-as 99.1 6E-10 1.3E-14 97.1 11.0 96 47-148 21-121 (127)
25 PF12678 zf-rbx1: RING-H2 zinc 99.1 8.9E-11 1.9E-15 92.6 3.7 45 204-249 19-73 (73)
26 KOG0823 Predicted E3 ubiquitin 99.0 4E-10 8.6E-15 105.6 7.5 61 201-264 44-106 (230)
27 PLN03208 E3 ubiquitin-protein 99.0 4E-10 8.7E-15 103.8 5.7 57 203-262 17-88 (193)
28 cd04815 PA_M28_2 PA_M28_2: Pro 99.0 1.2E-09 2.6E-14 96.2 7.6 104 39-147 7-127 (134)
29 cd02128 PA_TfR PA_TfR: Proteas 98.9 2.4E-09 5.1E-14 98.6 8.2 115 32-148 12-157 (183)
30 KOG0317 Predicted E3 ubiquitin 98.9 5.7E-10 1.2E-14 107.5 4.2 50 203-256 238-287 (293)
31 cd02120 PA_subtilisin_like PA_ 98.9 5.2E-09 1.1E-13 90.3 8.4 83 58-147 36-119 (126)
32 cd00162 RING RING-finger (Real 98.9 1.6E-09 3.5E-14 75.5 3.6 45 206-252 1-45 (45)
33 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.6E-09 5.7E-14 73.8 2.2 39 207-248 1-39 (39)
34 PF12861 zf-Apc11: Anaphase-pr 98.7 1.6E-08 3.5E-13 81.2 4.5 50 204-253 21-82 (85)
35 PF15227 zf-C3HC4_4: zinc fing 98.7 7.4E-09 1.6E-13 72.9 2.3 39 207-248 1-42 (42)
36 PF13920 zf-C3HC4_3: Zinc fing 98.7 7.2E-09 1.6E-13 75.5 2.0 47 204-254 2-49 (50)
37 KOG0802 E3 ubiquitin ligase [P 98.7 8.1E-09 1.7E-13 110.6 3.2 55 203-258 290-346 (543)
38 KOG0320 Predicted E3 ubiquitin 98.7 1.5E-08 3.3E-13 91.4 3.7 51 203-255 130-180 (187)
39 PF00097 zf-C3HC4: Zinc finger 98.7 1.2E-08 2.6E-13 71.0 2.3 40 207-248 1-41 (41)
40 PHA02926 zinc finger-like prot 98.6 2.1E-08 4.5E-13 93.6 3.9 53 202-254 168-231 (242)
41 PF14634 zf-RING_5: zinc-RING 98.6 3.1E-08 6.8E-13 70.3 3.7 44 206-250 1-44 (44)
42 smart00184 RING Ring finger. E 98.6 4E-08 8.6E-13 66.0 3.6 39 207-248 1-39 (39)
43 smart00504 Ubox Modified RING 98.5 1.1E-07 2.4E-12 72.0 3.6 46 205-254 2-47 (63)
44 TIGR00599 rad18 DNA repair pro 98.3 2.5E-07 5.5E-12 94.6 3.3 49 203-255 25-73 (397)
45 COG5574 PEX10 RING-finger-cont 98.3 2.7E-07 5.8E-12 88.2 3.1 51 203-256 214-265 (271)
46 PF13445 zf-RING_UBOX: RING-ty 98.3 2.6E-07 5.6E-12 65.3 1.6 39 207-246 1-43 (43)
47 COG5194 APC11 Component of SCF 98.3 6.7E-07 1.4E-11 70.3 3.8 49 207-256 34-84 (88)
48 KOG1734 Predicted RING-contain 98.3 3.1E-07 6.6E-12 87.8 2.1 55 201-255 221-283 (328)
49 cd04814 PA_M28_1 PA_M28_1: Pro 98.2 3.7E-06 8.1E-11 74.6 8.0 62 48-112 19-101 (142)
50 cd04822 PA_M28_1_3 PA_M28_1_3: 98.2 3.7E-06 8E-11 75.5 8.0 63 47-112 18-101 (151)
51 KOG1493 Anaphase-promoting com 98.2 5.4E-07 1.2E-11 70.3 1.6 50 204-253 20-81 (84)
52 cd04820 PA_M28_1_1 PA_M28_1_1: 98.2 5.2E-06 1.1E-10 73.3 8.0 65 45-112 18-97 (137)
53 cd02121 PA_GCPII_like PA_GCPII 98.2 5.4E-06 1.2E-10 78.8 8.3 61 47-110 43-105 (220)
54 KOG0828 Predicted E3 ubiquitin 98.2 7.4E-07 1.6E-11 91.3 2.6 52 203-254 570-635 (636)
55 smart00744 RINGv The RING-vari 98.1 2.4E-06 5.1E-11 62.2 3.8 43 206-249 1-49 (49)
56 PF04564 U-box: U-box domain; 98.0 1.4E-06 3.1E-11 68.6 1.1 49 204-255 4-52 (73)
57 cd02131 PA_hNAALADL2_like PA_h 98.0 9.1E-06 2E-10 72.4 5.2 63 46-112 12-76 (153)
58 KOG0287 Postreplication repair 98.0 3E-06 6.6E-11 83.3 1.7 48 204-255 23-70 (442)
59 COG5219 Uncharacterized conser 97.9 2.7E-06 5.9E-11 92.7 1.0 53 201-253 1466-1523(1525)
60 TIGR00570 cdk7 CDK-activating 97.9 7.7E-06 1.7E-10 80.8 4.0 53 204-256 3-57 (309)
61 KOG2164 Predicted E3 ubiquitin 97.9 5.9E-06 1.3E-10 85.6 2.7 53 204-259 186-242 (513)
62 KOG2177 Predicted E3 ubiquitin 97.9 4.5E-06 9.8E-11 80.2 1.7 43 203-249 12-54 (386)
63 COG5432 RAD18 RING-finger-cont 97.8 7.9E-06 1.7E-10 79.0 2.3 48 204-255 25-72 (391)
64 KOG2930 SCF ubiquitin ligase, 97.8 1.9E-05 4.1E-10 65.3 3.0 28 224-252 80-107 (114)
65 PF11793 FANCL_C: FANCL C-term 97.7 5.4E-06 1.2E-10 64.8 -0.4 50 204-253 2-66 (70)
66 KOG0804 Cytoplasmic Zn-finger 97.7 9.9E-06 2.2E-10 82.5 1.4 47 204-253 175-222 (493)
67 KOG4265 Predicted E3 ubiquitin 97.7 3.1E-05 6.7E-10 77.3 3.5 50 202-255 288-338 (349)
68 KOG0824 Predicted E3 ubiquitin 97.6 3.2E-05 6.9E-10 75.4 2.4 50 204-256 7-56 (324)
69 KOG0311 Predicted E3 ubiquitin 97.5 1.7E-05 3.6E-10 78.8 -0.3 53 202-256 41-93 (381)
70 KOG1645 RING-finger-containing 97.5 5.9E-05 1.3E-09 76.2 3.2 49 204-252 4-55 (463)
71 KOG0827 Predicted E3 ubiquitin 97.4 8.4E-05 1.8E-09 74.6 2.9 49 205-254 5-57 (465)
72 KOG3970 Predicted E3 ubiquitin 97.4 0.0012 2.7E-08 62.0 9.5 55 201-256 47-108 (299)
73 KOG0825 PHD Zn-finger protein 97.3 3.9E-05 8.4E-10 82.5 -0.6 53 202-255 121-173 (1134)
74 KOG4445 Uncharacterized conser 97.3 0.00012 2.7E-09 71.2 2.0 55 199-253 110-186 (368)
75 KOG1039 Predicted E3 ubiquitin 97.2 0.00014 3.1E-09 73.2 2.2 52 202-253 159-221 (344)
76 PF14835 zf-RING_6: zf-RING of 97.2 8.3E-05 1.8E-09 56.6 -0.3 47 205-256 8-54 (65)
77 KOG4172 Predicted E3 ubiquitin 97.2 0.00014 3.1E-09 53.3 0.9 47 204-253 7-54 (62)
78 KOG0978 E3 ubiquitin ligase in 97.0 0.00022 4.7E-09 77.4 0.9 49 205-256 644-692 (698)
79 KOG1941 Acetylcholine receptor 96.9 0.0005 1.1E-08 69.2 2.7 47 204-250 365-413 (518)
80 KOG1428 Inhibitor of type V ad 96.8 0.0011 2.4E-08 75.3 4.0 73 182-254 3464-3545(3738)
81 PF11789 zf-Nse: Zinc-finger o 96.7 0.00057 1.2E-08 51.3 1.1 42 204-247 11-53 (57)
82 KOG1002 Nucleotide excision re 96.6 0.00093 2E-08 69.6 2.0 57 198-257 530-590 (791)
83 KOG4159 Predicted E3 ubiquitin 96.6 0.0011 2.3E-08 68.3 2.2 49 202-254 82-130 (398)
84 KOG0801 Predicted E3 ubiquitin 96.5 0.0009 1.9E-08 59.9 0.6 28 204-231 177-204 (205)
85 PF05883 Baculo_RING: Baculovi 96.5 0.0014 3.1E-08 57.2 1.8 35 204-238 26-66 (134)
86 PHA02825 LAP/PHD finger-like p 96.2 0.0064 1.4E-07 54.5 4.3 49 203-255 7-61 (162)
87 KOG1814 Predicted E3 ubiquitin 96.2 0.0028 6.2E-08 64.4 2.3 47 203-249 183-236 (445)
88 PHA02862 5L protein; Provision 96.1 0.0052 1.1E-07 54.2 3.5 48 204-255 2-55 (156)
89 KOG1785 Tyrosine kinase negati 96.1 0.0028 6E-08 64.1 1.8 47 204-253 369-416 (563)
90 KOG0297 TNF receptor-associate 96.0 0.0035 7.5E-08 64.8 2.1 54 202-258 19-72 (391)
91 KOG2879 Predicted E3 ubiquitin 95.7 0.008 1.7E-07 58.3 3.0 49 203-253 238-287 (298)
92 PF12906 RINGv: RING-variant d 95.3 0.0073 1.6E-07 43.4 1.0 41 207-248 1-47 (47)
93 cd04821 PA_M28_1_2 PA_M28_1_2: 95.2 0.023 5.1E-07 51.4 4.2 40 72-111 45-103 (157)
94 PF14570 zf-RING_4: RING/Ubox 95.1 0.013 2.8E-07 42.3 1.9 45 207-252 1-47 (48)
95 COG5222 Uncharacterized conser 95.1 0.022 4.8E-07 55.8 3.9 44 205-250 275-318 (427)
96 COG5152 Uncharacterized conser 95.0 0.01 2.2E-07 54.9 1.3 44 204-251 196-239 (259)
97 KOG2660 Locus-specific chromos 95.0 0.0069 1.5E-07 60.1 0.1 48 204-254 15-62 (331)
98 KOG1571 Predicted E3 ubiquitin 94.9 0.021 4.6E-07 57.4 3.4 45 202-253 303-347 (355)
99 PF10367 Vps39_2: Vacuolar sor 94.6 0.015 3.3E-07 48.3 1.2 32 203-235 77-108 (109)
100 KOG3039 Uncharacterized conser 94.5 0.032 7E-07 53.3 3.3 52 204-256 221-273 (303)
101 PHA03096 p28-like protein; Pro 94.5 0.02 4.4E-07 56.6 2.1 36 205-240 179-219 (284)
102 COG5236 Uncharacterized conser 94.5 0.037 8.1E-07 55.3 3.8 65 183-251 40-106 (493)
103 COG5175 MOT2 Transcriptional r 94.4 0.031 6.7E-07 55.7 3.0 53 203-255 13-66 (480)
104 KOG1952 Transcription factor N 94.2 0.018 3.8E-07 63.4 1.0 48 203-250 190-244 (950)
105 PF14447 Prok-RING_4: Prokaryo 94.0 0.029 6.3E-07 41.6 1.4 47 204-256 7-53 (55)
106 KOG4185 Predicted E3 ubiquitin 93.7 0.038 8.3E-07 54.7 2.2 49 204-252 3-54 (296)
107 KOG4739 Uncharacterized protei 93.6 0.029 6.4E-07 53.6 1.2 46 206-255 5-50 (233)
108 KOG4275 Predicted E3 ubiquitin 93.5 0.019 4.2E-07 56.1 -0.2 43 204-254 300-343 (350)
109 KOG3268 Predicted E3 ubiquitin 93.4 0.12 2.6E-06 47.2 4.7 51 204-254 165-229 (234)
110 KOG4692 Predicted E3 ubiquitin 93.4 0.067 1.4E-06 53.7 3.3 49 202-254 420-468 (489)
111 PF04641 Rtf2: Rtf2 RING-finge 93.4 0.073 1.6E-06 52.0 3.6 53 202-256 111-164 (260)
112 KOG1813 Predicted E3 ubiquitin 93.2 0.034 7.3E-07 54.6 0.9 45 204-252 241-285 (313)
113 PF08746 zf-RING-like: RING-li 92.9 0.037 8E-07 39.1 0.5 42 207-248 1-43 (43)
114 KOG0827 Predicted E3 ubiquitin 92.7 0.0079 1.7E-07 60.8 -4.3 50 205-255 197-247 (465)
115 PF10272 Tmpp129: Putative tra 92.6 0.12 2.5E-06 52.8 3.8 30 225-254 311-352 (358)
116 KOG1001 Helicase-like transcri 91.7 0.085 1.8E-06 58.2 1.7 47 205-255 455-502 (674)
117 KOG2114 Vacuolar assembly/sort 91.3 0.12 2.7E-06 57.1 2.4 42 205-252 841-882 (933)
118 KOG1940 Zn-finger protein [Gen 91.0 0.11 2.3E-06 51.1 1.5 46 204-250 158-204 (276)
119 KOG2034 Vacuolar sorting prote 89.5 0.19 4.1E-06 56.0 2.0 35 203-238 816-850 (911)
120 KOG2932 E3 ubiquitin ligase in 89.1 0.18 3.9E-06 49.9 1.3 42 206-252 92-133 (389)
121 COG5220 TFB3 Cdk activating ki 88.6 0.24 5.3E-06 47.3 1.7 49 204-252 10-63 (314)
122 KOG3800 Predicted E3 ubiquitin 87.8 0.49 1.1E-05 46.5 3.4 48 206-253 2-51 (300)
123 KOG0826 Predicted E3 ubiquitin 87.6 0.4 8.6E-06 47.9 2.6 47 203-252 299-345 (357)
124 KOG1609 Protein involved in mR 86.3 0.54 1.2E-05 46.5 2.8 53 204-256 78-137 (323)
125 KOG2817 Predicted E3 ubiquitin 85.3 0.66 1.4E-05 47.5 2.9 46 204-249 334-381 (394)
126 KOG3002 Zn finger protein [Gen 85.2 0.47 1E-05 47.4 1.7 43 204-254 48-92 (299)
127 KOG0825 PHD Zn-finger protein 84.6 0.55 1.2E-05 51.7 2.0 52 202-253 94-154 (1134)
128 KOG3899 Uncharacterized conser 84.2 0.67 1.5E-05 45.6 2.3 30 225-254 325-366 (381)
129 KOG3053 Uncharacterized conser 84.2 0.63 1.4E-05 45.0 2.0 55 201-255 17-84 (293)
130 PF14446 Prok-RING_1: Prokaryo 83.5 1.2 2.7E-05 33.0 2.8 32 204-235 5-37 (54)
131 KOG0298 DEAD box-containing he 83.3 0.39 8.4E-06 55.5 0.3 47 203-252 1152-1198(1394)
132 KOG1100 Predicted E3 ubiquitin 82.9 0.47 1E-05 44.9 0.6 39 207-253 161-200 (207)
133 KOG3161 Predicted E3 ubiquitin 82.6 0.45 9.8E-06 51.3 0.4 43 205-251 12-55 (861)
134 COG5183 SSM4 Protein involved 81.7 1.2 2.6E-05 49.4 3.2 49 203-252 11-65 (1175)
135 KOG1812 Predicted E3 ubiquitin 80.0 0.79 1.7E-05 47.4 1.1 37 204-240 146-183 (384)
136 KOG0309 Conserved WD40 repeat- 79.3 1.2 2.5E-05 49.1 2.1 24 222-246 1045-1068(1081)
137 KOG2195 Transferrin receptor a 78.9 3.2 7E-05 46.1 5.5 37 74-110 182-218 (702)
138 PF07800 DUF1644: Protein of u 78.9 2.3 4.9E-05 38.4 3.5 32 204-238 2-46 (162)
139 KOG0802 E3 ubiquitin ligase [P 78.6 1.2 2.6E-05 48.2 2.0 47 202-256 477-523 (543)
140 PF05290 Baculo_IE-1: Baculovi 75.1 2.3 4.9E-05 37.4 2.3 52 203-254 79-133 (140)
141 KOG4367 Predicted Zn-finger pr 72.1 2.9 6.3E-05 43.4 2.6 34 204-240 4-37 (699)
142 KOG1829 Uncharacterized conser 72.0 1.7 3.7E-05 47.0 1.1 42 204-249 511-557 (580)
143 PF02891 zf-MIZ: MIZ/SP-RING z 70.8 3.5 7.6E-05 29.9 2.2 44 205-251 3-50 (50)
144 KOG4362 Transcriptional regula 69.5 1.5 3.2E-05 48.2 -0.1 47 204-253 21-69 (684)
145 PF03854 zf-P11: P-11 zinc fin 69.0 1.7 3.7E-05 31.3 0.2 31 224-255 17-48 (50)
146 PF14569 zf-UDP: Zinc-binding 66.9 7.4 0.00016 31.0 3.4 58 203-260 8-69 (80)
147 KOG0269 WD40 repeat-containing 66.5 3.9 8.5E-05 45.2 2.4 41 205-247 780-820 (839)
148 smart00249 PHD PHD zinc finger 65.9 2.4 5.3E-05 28.8 0.5 31 206-236 1-31 (47)
149 KOG0260 RNA polymerase II, lar 64.8 1.9E+02 0.0041 34.4 14.9 14 204-217 1391-1404(1605)
150 PLN02189 cellulose synthase 62.3 9.6 0.00021 44.0 4.5 57 204-260 34-94 (1040)
151 KOG3579 Predicted E3 ubiquitin 59.1 4.4 9.4E-05 39.9 1.0 33 205-240 269-305 (352)
152 KOG4718 Non-SMC (structural ma 59.0 4.9 0.00011 38.0 1.3 43 204-249 181-223 (235)
153 KOG1815 Predicted E3 ubiquitin 57.9 6.3 0.00014 41.5 2.0 36 203-240 69-104 (444)
154 PLN02436 cellulose synthase A 57.7 13 0.00028 43.1 4.5 56 204-259 36-95 (1094)
155 KOG2807 RNA polymerase II tran 55.7 11 0.00023 38.0 3.1 61 189-250 314-375 (378)
156 KOG3005 GIY-YIG type nuclease 55.5 6.6 0.00014 38.4 1.6 48 205-252 183-242 (276)
157 PF13605 DUF4141: Domain of un 55.2 15 0.00031 27.5 3.0 28 1-28 1-28 (55)
158 KOG2066 Vacuolar assembly/sort 54.5 5.7 0.00012 44.2 1.0 43 204-248 784-830 (846)
159 PF13901 DUF4206: Domain of un 51.8 7 0.00015 36.7 1.1 42 203-250 151-197 (202)
160 KOG0260 RNA polymerase II, lar 50.8 3.7E+02 0.0081 32.1 14.3 24 87-110 1194-1218(1605)
161 KOG3039 Uncharacterized conser 48.4 10 0.00022 36.7 1.6 33 204-239 43-75 (303)
162 TIGR00622 ssl1 transcription f 46.6 21 0.00045 30.5 3.0 45 204-249 55-110 (112)
163 PF06844 DUF1244: Protein of u 46.1 12 0.00026 28.8 1.4 13 228-240 11-23 (68)
164 smart00132 LIM Zinc-binding do 45.6 15 0.00032 23.8 1.7 37 206-252 1-37 (39)
165 KOG3113 Uncharacterized conser 45.0 13 0.00027 36.2 1.6 50 204-256 111-161 (293)
166 PLN02638 cellulose synthase A 44.5 30 0.00065 40.3 4.8 56 204-259 17-76 (1079)
167 PF06906 DUF1272: Protein of u 44.4 25 0.00054 26.3 2.8 46 205-254 6-53 (57)
168 PF13956 Ibs_toxin: Toxin Ibs, 43.6 14 0.0003 21.2 1.0 12 1-12 2-13 (19)
169 KOG3842 Adaptor protein Pellin 43.3 26 0.00057 35.2 3.6 51 203-253 340-414 (429)
170 PLN02915 cellulose synthase A 42.3 32 0.0007 39.9 4.6 57 203-259 14-74 (1044)
171 COG5109 Uncharacterized conser 42.1 20 0.00044 35.9 2.6 45 204-248 336-382 (396)
172 KOG0956 PHD finger protein AF1 40.8 19 0.00041 39.7 2.3 71 177-256 99-185 (900)
173 PLN02400 cellulose synthase 40.8 29 0.00063 40.4 3.9 57 204-260 36-96 (1085)
174 PF00412 LIM: LIM domain; Int 38.9 14 0.0003 26.7 0.8 38 207-254 1-38 (58)
175 KOG1729 FYVE finger containing 38.8 5.7 0.00012 39.5 -1.7 38 205-242 215-252 (288)
176 COG3813 Uncharacterized protei 37.8 23 0.0005 27.8 1.8 48 206-257 7-56 (84)
177 PF05605 zf-Di19: Drought indu 36.3 20 0.00043 26.1 1.2 37 204-250 2-39 (54)
178 KOG2068 MOT2 transcription fac 34.2 34 0.00073 34.6 2.8 46 204-251 249-296 (327)
179 PLN02248 cellulose synthase-li 33.7 75 0.0016 37.3 5.7 51 204-255 124-179 (1135)
180 PF15240 Pro-rich: Proline-ric 32.9 26 0.00057 32.4 1.7 13 3-15 2-14 (179)
181 PF08029 HisG_C: HisG, C-termi 32.5 70 0.0015 25.3 3.8 31 76-108 38-71 (75)
182 KOG1812 Predicted E3 ubiquitin 32.3 21 0.00046 36.9 1.1 44 204-248 306-351 (384)
183 KOG2071 mRNA cleavage and poly 30.7 23 0.0005 38.4 1.1 37 202-238 511-557 (579)
184 PF07975 C1_4: TFIIH C1-like d 30.6 29 0.00062 25.5 1.2 42 207-249 2-50 (51)
185 cd03029 GRX_hybridPRX5 Glutare 29.4 68 0.0015 24.1 3.3 56 78-134 2-58 (72)
186 PF00628 PHD: PHD-finger; Int 28.9 15 0.00033 26.0 -0.4 45 206-250 1-50 (51)
187 PF07649 C1_3: C1-like domain; 28.7 34 0.00074 21.7 1.2 29 206-234 2-30 (30)
188 PF05715 zf-piccolo: Piccolo Z 27.9 39 0.00085 25.6 1.6 18 242-259 2-19 (61)
189 KOG0824 Predicted E3 ubiquitin 27.6 52 0.0011 32.9 2.8 50 203-255 104-153 (324)
190 PF02950 Conotoxin: Conotoxin; 27.4 20 0.00044 27.6 0.0 15 1-15 1-15 (75)
191 KOG4218 Nuclear hormone recept 27.3 23 0.0005 36.0 0.3 47 203-250 14-75 (475)
192 PF10571 UPF0547: Uncharacteri 27.1 25 0.00055 22.0 0.4 8 207-214 3-10 (26)
193 COG3492 Uncharacterized protei 26.6 38 0.00083 27.8 1.4 13 228-240 42-54 (104)
194 PF04423 Rad50_zn_hook: Rad50 25.9 22 0.00047 25.9 -0.1 11 244-254 22-32 (54)
195 KOG4185 Predicted E3 ubiquitin 25.8 13 0.00029 36.6 -1.7 49 204-252 207-266 (296)
196 PLN02195 cellulose synthase A 25.1 75 0.0016 36.8 3.9 51 204-254 6-60 (977)
197 PF04710 Pellino: Pellino; In 25.1 24 0.00052 36.5 0.0 37 212-251 296-337 (416)
198 PF08105 Antimicrobial10: Metc 24.8 99 0.0021 22.5 3.0 16 32-47 33-48 (52)
199 PRK10824 glutaredoxin-4; Provi 24.7 63 0.0014 27.7 2.5 28 76-103 14-47 (115)
200 COG4847 Uncharacterized protei 23.5 71 0.0015 26.5 2.4 35 204-239 6-40 (103)
201 TIGR02190 GlrX-dom Glutaredoxi 22.8 87 0.0019 24.2 2.8 59 76-135 7-66 (79)
202 PF07172 GRP: Glycine rich pro 22.6 46 0.001 27.5 1.2 10 10-19 15-24 (95)
203 KOG3842 Adaptor protein Pellin 21.5 38 0.00082 34.1 0.6 45 202-251 288-350 (429)
204 PF10497 zf-4CXXC_R1: Zinc-fin 20.7 1E+02 0.0023 25.9 3.0 25 226-250 37-69 (105)
205 PF01363 FYVE: FYVE zinc finge 20.4 29 0.00063 26.3 -0.4 35 204-238 9-44 (69)
206 cd03028 GRX_PICOT_like Glutare 20.4 1.5E+02 0.0032 23.6 3.8 59 76-135 7-72 (90)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-51 Score=402.47 Aligned_cols=272 Identities=51% Similarity=0.854 Sum_probs=234.0
Q ss_pred ChhHHHHHHHHHHHhc---cceEEEEEEeCCeeEEecccccccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcc
Q 014723 1 MNLSVVYLLCVLLICR---LASANVVLIGNNVTLSFDDIEANFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSS 77 (419)
Q Consensus 1 m~~~~ll~~~ll~~~~---~~~a~vvv~~~~~~~~f~~~~A~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~ 77 (419)
|.+..|+++.+|+++. ..++.|.+...|.+.+|.+.+|.||+.+..+++.|.++.++|.+||+++.+++........
T Consensus 1 ~~~~~l~~~~ll~~~~~~~~~a~~v~~~~~n~S~sf~d~~a~f~~s~~~e~~~G~l~~~ep~~aC~~i~~~p~~~~~~~~ 80 (348)
T KOG4628|consen 1 MSKSRLVIVSLLLLLSPFRLRAVAVALVDRNTSLSFADLPALFGPSLPSEGNLGVLVVAEPLNACNPITNFPEHSTRSTS 80 (348)
T ss_pred CceeeehHHHHHHHhhhhcccceEEEEccccccccccCCccccCCccccccceeeeecCCCccccCccccCccCCCCCcc
Confidence 3333444444444333 6688888889999999999999999999999999999999999999999987666666678
Q ss_pred eEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcceeeccCCCCceEEeEEEeechhhHHHHHhhCCCcEEEEEec-c
Q 014723 78 AFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIP-S 156 (419)
Q Consensus 78 ~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~~m~g~~~~i~IPsv~Is~~~G~~L~~~l~~~~veV~IIp-~ 156 (419)
++|||+||+|+|++|+++||++|++|+|||||.+.+.++.|.++..++.|+++|++...|+.|.+|.+...+..+.++ .
T Consensus 81 ~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~~~~~~~~~~~ 160 (348)
T KOG4628|consen 81 FLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRTEFECLLIPLG 160 (348)
T ss_pred eEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcccceeeeecccc
Confidence 999999999999999999999999999999999888899999899999999999999999999999988888888887 5
Q ss_pred ccccch-----------------------hhhccccccccccccccCchhhHHhcCCcceeccccccCCCCCccceecCc
Q 014723 157 FENSAW-----------------------HRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLED 213 (419)
Q Consensus 157 ~~~saW-----------------------~rirr~~~~~~~~r~~~g~~~~~i~~lp~~~~~~~~~~~~~~~~C~ICle~ 213 (419)
+....| ++++++.+.+.+ .+.+++.++.++++|...|++..++... ++|+||+|+
T Consensus 161 ~~~~~ws~~~~~~i~~l~v~~il~~~f~i~~~~~~~~~r~~-~~~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEd 238 (348)
T KOG4628|consen 161 FDTSPWSILAISLISLLTVVAILVTCFFIYRIRRLIRARNR-LRRNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLED 238 (348)
T ss_pred ccCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhhhhHHHHHhhCCcEEeccccccCCC-ceEEEeecc
Confidence 666666 233333222222 5678999999999999999988776655 899999999
Q ss_pred ccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCCCCCCCCCCCCCCCCCCCC
Q 014723 214 YSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPAS 274 (419)
Q Consensus 214 ~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~p~~~~~~~~~~~~~~~ 274 (419)
|+.||++++|||+|.||..||++||.+++..||+||+++.+..+.+++.|++|+++..+++
T Consensus 239 Y~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~tp~~~~~~~~ 299 (348)
T KOG4628|consen 239 YEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDTPLLSQGPSS 299 (348)
T ss_pred cccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCCccccCCCCc
Confidence 9999999999999999999999999998888999999999999999999999998887765
No 2
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.88 E-value=9.6e-22 Score=176.61 Aligned_cols=125 Identities=51% Similarity=0.796 Sum_probs=105.9
Q ss_pred eeEEecccccccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEee
Q 014723 29 VTLSFDDIEANFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYD 108 (419)
Q Consensus 29 ~~~~f~~~~A~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~n 108 (419)
....|+..+|.||+..++.++.|.|+.++|.+||+++...+.+..++.++||||+||+|+|.+|++|||++||+||||||
T Consensus 20 ~~~~~~~~~A~FG~~~~~~~~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n 99 (153)
T cd02123 20 LTDEFDDLPANFGPIPPGSGLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYN 99 (153)
T ss_pred ccceEeeecccCCCCCCCCceEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEE
Confidence 55678999999999999899999999999999999987643233566899999999999999999999999999999999
Q ss_pred cCCCcceeeccCCCC---ceEEeEEEeechhhHHHHHhhCCCcEEEEEec
Q 014723 109 NEDDGVLVAMAGNSA---GIKIHAVFVSKASGEKLKQYAGSTDMEIWIIP 155 (419)
Q Consensus 109 n~~~~~~~~m~g~~~---~i~IPsv~Is~~~G~~L~~~l~~~~veV~IIp 155 (419)
++++ .+..|.++.. .+.||+++|++++|+.|++++..... +++++
T Consensus 100 ~~~~-~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~-~~~~~ 147 (153)
T cd02123 100 DESN-DLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG-VILIP 147 (153)
T ss_pred CCCC-cceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc-EEECC
Confidence 9875 4556666543 78999999999999999999987665 44443
No 3
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.84 E-value=1.6e-20 Score=163.42 Aligned_cols=113 Identities=30% Similarity=0.510 Sum_probs=93.6
Q ss_pred ccccccCCcCCC-CCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCc
Q 014723 35 DIEANFAPAIRG-SGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDG 113 (419)
Q Consensus 35 ~~~A~Fg~~~~~-~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~ 113 (419)
..+|.||..++. ..+.|.|+.++|.+||+++.+. .++.|+|+||+||+|+|.+|+++||++||+||||||+.++.
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~~~p~~gC~~~~~~----~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~ 77 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVKAKPYRACSEITNA----EEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGS 77 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEeCCchhcccCCCCc----cccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCc
Confidence 358999999885 4789999999999999988652 24689999999999999999999999999999999986642
Q ss_pred -----ceeeccCCC---CceEEeEEEeechhhHHHHHhhCCC-cEEE
Q 014723 114 -----VLVAMAGNS---AGIKIHAVFVSKASGEKLKQYAGST-DMEI 151 (419)
Q Consensus 114 -----~~~~m~g~~---~~i~IPsv~Is~~~G~~L~~~l~~~-~veV 151 (419)
.+..|.++. +.+.||+++|++.+|+.|+..+..+ .+++
T Consensus 78 ~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 78 SSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred cccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEE
Confidence 345566654 4689999999999999999887653 4443
No 4
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.84 E-value=1.9e-20 Score=161.09 Aligned_cols=108 Identities=31% Similarity=0.448 Sum_probs=92.4
Q ss_pred ccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCC--ccee
Q 014723 39 NFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDD--GVLV 116 (419)
Q Consensus 39 ~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~--~~~~ 116 (419)
.||..+..+...|.|+.++|.+||++..+ .++++|+|+||+||+|+|.+|+++||++||+||||||+..+ ....
T Consensus 1 ~~~~~~~~~~~~~~lv~~~p~~gC~~~~~----~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~ 76 (118)
T cd02127 1 DFGTIFNTRYKHVPLVPADPLEACEELRN----IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYV 76 (118)
T ss_pred CCCccccccccceEEEECCccccCCCCCC----ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccce
Confidence 48999999999999999999999998754 24578999999999999999999999999999999998654 2345
Q ss_pred eccCC--CCceEEeEEEeechhhHHHHHhhCCCcEE
Q 014723 117 AMAGN--SAGIKIHAVFVSKASGEKLKQYAGSTDME 150 (419)
Q Consensus 117 ~m~g~--~~~i~IPsv~Is~~~G~~L~~~l~~~~ve 150 (419)
.|.++ ...+.||+++|++.+|+.|++.+..+.+.
T Consensus 77 ~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~ 112 (118)
T cd02127 77 EMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLGLP 112 (118)
T ss_pred EecCCCCCCCceEEEEEecHHHHHHHHHHHHcCCce
Confidence 56655 45789999999999999999988776544
No 5
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.83 E-value=5.8e-20 Score=160.05 Aligned_cols=109 Identities=32% Similarity=0.432 Sum_probs=89.1
Q ss_pred ccCCcCCCCCeeEEEEec-CCccCCCCCccCccc---cCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcc
Q 014723 39 NFAPAIRGSGDCGVLYVA-EPLDACSNLTSKVEK---VSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGV 114 (419)
Q Consensus 39 ~Fg~~~~~~~~~G~l~~a-~p~daC~pl~~~~~~---~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~ 114 (419)
+||...+++.+.|.|+.+ ++.+||+++...... .+...++||||+||+|+|.+|++|||++||+||||||+.++ .
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~-~ 79 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDE-P 79 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCC-c
Confidence 699999999999999776 679999999653211 12357899999999999999999999999999999999775 3
Q ss_pred eeecc--------CCCCceEEeEEEeechhhHHHHHhhCCCc
Q 014723 115 LVAMA--------GNSAGIKIHAVFVSKASGEKLKQYAGSTD 148 (419)
Q Consensus 115 ~~~m~--------g~~~~i~IPsv~Is~~~G~~L~~~l~~~~ 148 (419)
+..|. +...++.||+++|++.+|+.|++.+..+.
T Consensus 80 ~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~ 121 (127)
T cd02125 80 LLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGE 121 (127)
T ss_pred cccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCC
Confidence 44443 22346789999999999999999876643
No 6
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.82 E-value=7e-20 Score=157.31 Aligned_cols=105 Identities=33% Similarity=0.476 Sum_probs=86.9
Q ss_pred ccccccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcc
Q 014723 35 DIEANFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGV 114 (419)
Q Consensus 35 ~~~A~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~ 114 (419)
.+.|.|||.+... +.+... ++|.+||+++. .++++|+||||+||+|+|.+|++|||++||+||||||+.++..
T Consensus 5 ~~~~~~~~~~~~~-~~~~~~-~~p~~gC~~~~-----~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~ 77 (117)
T cd04813 5 GRYASFSPILNPH-LRGSYK-VSPTDACSLQE-----HAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRG 77 (117)
T ss_pred ccccccCCccCcc-cccccc-CCCCCCCCCCC-----cCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCccc
Confidence 4679999999865 555433 89999999882 2567999999999999999999999999999999999877644
Q ss_pred eeecc--CCCCceEEeEEEeechhhHHHHHhhCC
Q 014723 115 LVAMA--GNSAGIKIHAVFVSKASGEKLKQYAGS 146 (419)
Q Consensus 115 ~~~m~--g~~~~i~IPsv~Is~~~G~~L~~~l~~ 146 (419)
+..|. +....++||+++|++++|++|+.+++.
T Consensus 78 ~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 78 LITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred ceecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 55555 345578999999999999999988764
No 7
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.82 E-value=1.6e-19 Score=159.40 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=93.2
Q ss_pred ccccccCCcCCCCCeeEEEEecC---CccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCC
Q 014723 35 DIEANFAPAIRGSGDCGVLYVAE---PLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNED 111 (419)
Q Consensus 35 ~~~A~Fg~~~~~~~~~G~l~~a~---p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~ 111 (419)
..+|+||...+..++.|.|+.+. +.+||+++.+. ...+++.++||||+||+|+|.+|++|||++||+||||||+.+
T Consensus 17 ~~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~-~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~ 95 (138)
T cd02122 17 TESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRF-PIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPG 95 (138)
T ss_pred ccccccCCCCCCCccEEEEecCCCCCCcCCCCCCccc-cCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 34799999999999999986544 58899998652 123467899999999999999999999999999999999987
Q ss_pred -CcceeeccCCCCceEEeEEEeechhhHHHHHhhCCC-cEEEE
Q 014723 112 -DGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGST-DMEIW 152 (419)
Q Consensus 112 -~~~~~~m~g~~~~i~IPsv~Is~~~G~~L~~~l~~~-~veV~ 152 (419)
......|..+. ...||+++|++.+|+.|++.+..+ .++++
T Consensus 96 ~~~~~~~m~~~~-~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 96 TGNETVKMSHPG-TGDIVAIMITNPKGMEILELLERGISVTMV 137 (138)
T ss_pred CCCceeeccCCC-CCcceEEEEcHHHHHHHHHHHHcCCcEEEe
Confidence 33455665443 347899999999999999988654 34443
No 8
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.80 E-value=3.5e-19 Score=157.56 Aligned_cols=112 Identities=25% Similarity=0.460 Sum_probs=93.1
Q ss_pred CeeEEecccccccCCcCCC---CCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceE
Q 014723 28 NVTLSFDDIEANFAPAIRG---SGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAA 104 (419)
Q Consensus 28 ~~~~~f~~~~A~Fg~~~~~---~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~av 104 (419)
...-+|.+.+|.||+.++. .+..+.++.++|.+||+++.+ +++|+||||+||+|+|.+|++|||++||+||
T Consensus 14 ~~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~------~~~g~IvLV~RG~C~F~~K~~nA~~aGA~av 87 (139)
T cd02132 14 DEGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTS------KLSGSIALVERGECAFTEKAKIAEAGGASAL 87 (139)
T ss_pred ccccEEEeeccccCCCCCCcccCccEEEEEECCcccccCCCCc------ccCCeEEEEECCCCCHHHHHHHHHHcCCcEE
Confidence 3445789999999988764 467889999999999998842 5689999999999999999999999999999
Q ss_pred EEeecCCCcceeeccCC----CCceEEeEEEeechhhHHHHHhhCCC
Q 014723 105 IVYDNEDDGVLVAMAGN----SAGIKIHAVFVSKASGEKLKQYAGST 147 (419)
Q Consensus 105 Iv~nn~~~~~~~~m~g~----~~~i~IPsv~Is~~~G~~L~~~l~~~ 147 (419)
||||+.++ +..|.+. ...+.||+++|++.+|+.|++.+..+
T Consensus 88 Iv~n~~~~--~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g 132 (139)
T cd02132 88 LIINDQEE--LYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQG 132 (139)
T ss_pred EEEECCCc--ccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcC
Confidence 99998764 3344322 22578999999999999999988764
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.75 E-value=4.6e-18 Score=146.17 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=76.9
Q ss_pred eEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcceeeccCCCCceEEeE
Q 014723 50 CGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHA 129 (419)
Q Consensus 50 ~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~~m~g~~~~i~IPs 129 (419)
.-.|+.++|..||++.... ..+++|+|+||+||+|+|.+|++|||++||+|||||||++........++...++||+
T Consensus 21 ~~~~~~~~~~~gC~~~~~~---~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~ 97 (120)
T cd02129 21 LLPLRNLTSSVLCSASDVP---PGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPV 97 (120)
T ss_pred ceeeecCCCcCCCCccccC---ccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccE
Confidence 4467888999999987542 2457899999999999999999999999999999999976422222233346789999
Q ss_pred EEeechhhHHHHHhhCC
Q 014723 130 VFVSKASGEKLKQYAGS 146 (419)
Q Consensus 130 v~Is~~~G~~L~~~l~~ 146 (419)
++|++++|+.|.+.++.
T Consensus 98 v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 98 ALLSYKDMLDIQQTFGD 114 (120)
T ss_pred EEEeHHHHHHHHHHhcc
Confidence 99999999999988874
No 10
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.74 E-value=2.4e-17 Score=141.57 Aligned_cols=113 Identities=32% Similarity=0.463 Sum_probs=94.2
Q ss_pred cccccCCcCCC---CCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCC
Q 014723 36 IEANFAPAIRG---SGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDD 112 (419)
Q Consensus 36 ~~A~Fg~~~~~---~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~ 112 (419)
++|.||+.+.. ..+.|.++.+++.++|++... .++++|||+|++||+|+|.+|+++|+++||+|+||||+.+.
T Consensus 1 ~~a~fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~----~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~ 76 (118)
T cd04818 1 VSAGFGPALTNVTADVVLAGAAPASNTDGCTAFTN----AAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAG 76 (118)
T ss_pred CCcccCCcCccccccceeEEEecCCcccccCCCCc----CCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCC
Confidence 47999988885 568889999999999998864 24579999999999999999999999999999999998875
Q ss_pred cceeeccCCCCceEEeEEEeechhhHHHHHhhCC-CcEEEE
Q 014723 113 GVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS-TDMEIW 152 (419)
Q Consensus 113 ~~~~~m~g~~~~i~IPsv~Is~~~G~~L~~~l~~-~~veV~ 152 (419)
.....|.++.....||+++|++++|+.|++++.. ..+.++
T Consensus 77 ~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~ 117 (118)
T cd04818 77 GAPITMGGDDPDITIPAVMISQADGDALKAALAAGGTVTVT 117 (118)
T ss_pred CcceeccCCCCCCEEeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 4444555554556899999999999999999874 455543
No 11
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.72 E-value=7.6e-17 Score=139.41 Aligned_cols=109 Identities=28% Similarity=0.452 Sum_probs=88.8
Q ss_pred ccccCCcCCCCCeeEEEEecCC--ccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcc
Q 014723 37 EANFAPAIRGSGDCGVLYVAEP--LDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGV 114 (419)
Q Consensus 37 ~A~Fg~~~~~~~~~G~l~~a~p--~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~ 114 (419)
...|++..+..+++|.|++.++ .+||+++... ..+++||||||+||+|.|.+|+++||++||+|+||||+.++..
T Consensus 5 ~~~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~---~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~ 81 (122)
T cd04816 5 SLSYSPSTPPGGVTAPLVPLDPERPAGCDASDYD---GLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG 81 (122)
T ss_pred EEeccCCCCCCCcEEEEEEcCCCCccCCCccccC---CCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc
Confidence 4678888888999999988776 4899987432 3467999999999999999999999999999999999877533
Q ss_pred eeeccCC-CCceEEeEEEeechhhHHHHHhhCCCc
Q 014723 115 LVAMAGN-SAGIKIHAVFVSKASGEKLKQYAGSTD 148 (419)
Q Consensus 115 ~~~m~g~-~~~i~IPsv~Is~~~G~~L~~~l~~~~ 148 (419)
...+.+. .....||+++|++.+|+.|+++++.+.
T Consensus 82 ~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~ 116 (122)
T cd04816 82 TAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAGE 116 (122)
T ss_pred ccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCCC
Confidence 3222222 256789999999999999999987654
No 12
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.67 E-value=7.2e-16 Score=133.25 Aligned_cols=112 Identities=27% Similarity=0.402 Sum_probs=84.9
Q ss_pred EecccccccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCC
Q 014723 32 SFDDIEANFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNED 111 (419)
Q Consensus 32 ~f~~~~A~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~ 111 (419)
.|+.....|.+. .+.+|.|+.. +.+||.+.... .+++||||||+||+|+|.+|+++|+++||++|||||+..
T Consensus 8 ~~~~~~~~~~~~---~~~~g~lv~~-~~~gC~~~~~~----~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~ 79 (122)
T cd02130 8 AIPTTAFTYSPA---GEVTGPLVVV-PNLGCDAADYP----ASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVP 79 (122)
T ss_pred EEeeeecccCCC---CCcEEEEEEe-CCCCCCcccCC----cCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 455544444443 4457988875 46899976542 357999999999999999999999999999999999884
Q ss_pred CcceeeccCCCCceEEeEEEeechhhHHHHHhhCCC-cEEE
Q 014723 112 DGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGST-DMEI 151 (419)
Q Consensus 112 ~~~~~~m~g~~~~i~IPsv~Is~~~G~~L~~~l~~~-~veV 151 (419)
.+....+.++..+..||+++|++++|+.|++.+..+ .+.+
T Consensus 80 ~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 80 AGGLSGTLGEPSGPYVPTVGISQEDGKALVAALANGGEVSA 120 (122)
T ss_pred CcccccccCCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 333333445545678999999999999999887764 4443
No 13
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.61 E-value=2.3e-16 Score=138.39 Aligned_cols=117 Identities=26% Similarity=0.343 Sum_probs=94.1
Q ss_pred EEeCCeeEEeccccc-ccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCc
Q 014723 24 LIGNNVTLSFDDIEA-NFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFE 102 (419)
Q Consensus 24 v~~~~~~~~f~~~~A-~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~ 102 (419)
+.+..+.|+|...+| +||......-..-.|+.++|..||+.+.|.- ...|.|+|++||+|+|..|.++++++||.
T Consensus 38 lsP~~l~Yty~~~pAkdfG~~F~~r~e~~~lV~adPp~aC~elrN~~----f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~ 113 (193)
T KOG3920|consen 38 LSPYTLAYTYQMKPAKDFGVHFPDRFENLELVLADPPHACEELRNEI----FAPDSVALMERGECSFLVKTLNGEKAGAT 113 (193)
T ss_pred cCcccEEEEEEecchhhhccccchhhcCcceeecCChhHHHHHhhcc----cCCCcEEEEecCCceeeehhhhhhhcCce
Confidence 345568899999888 8999998665555789999999999998743 34689999999999999999999999999
Q ss_pred eEEEeecCCCc----ceeeccCCC--CceEEeEEEeechhhHHHHHhh
Q 014723 103 AAIVYDNEDDG----VLVAMAGNS--AGIKIHAVFVSKASGEKLKQYA 144 (419)
Q Consensus 103 avIv~nn~~~~----~~~~m~g~~--~~i~IPsv~Is~~~G~~L~~~l 144 (419)
++||-|+...+ ..+.|+.+. ...+||++|+-..+|-.++.-+
T Consensus 114 aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL 161 (193)
T KOG3920|consen 114 AIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSL 161 (193)
T ss_pred EEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhH
Confidence 99998765432 256787654 3678999999999886554433
No 14
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.60 E-value=7.8e-15 Score=129.45 Aligned_cols=102 Identities=30% Similarity=0.380 Sum_probs=76.7
Q ss_pred ccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCC-----HHHHHHHHHHcCCceEEEeecCCC-
Q 014723 39 NFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCS-----FEDKVRNAQKAGFEAAIVYDNEDD- 112 (419)
Q Consensus 39 ~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~Cs-----F~~Kv~nAq~aGA~avIv~nn~~~- 112 (419)
.|........++|.|+.... .+|+-. ..+++|||+||+||+|+ |.+|+++||++||+|||||||.+.
T Consensus 26 ~~~s~~~~g~~tg~lv~~g~-~g~d~~------~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~ 98 (139)
T cd04817 26 SYASMPVTGSATGSLYYCGT-SGGSYI------CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALA 98 (139)
T ss_pred cccccccCCcceEEEEEccC-CCcccc------CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCC
Confidence 33334444567888887764 347311 12568999999999999 999999999999999999999832
Q ss_pred cceeeccCCCC-ceEEeEEEeechhhHHHHHhhCCC
Q 014723 113 GVLVAMAGNSA-GIKIHAVFVSKASGEKLKQYAGST 147 (419)
Q Consensus 113 ~~~~~m~g~~~-~i~IPsv~Is~~~G~~L~~~l~~~ 147 (419)
+.+..+.++.. .+.||+++|++++|+.|+..++..
T Consensus 99 g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~~~ 134 (139)
T cd04817 99 GLQNPFLVDTNNDTTIPSVSVDRADGQALLAALGQS 134 (139)
T ss_pred CcccccccCCCCCceEeEEEeeHHHHHHHHHHhcCC
Confidence 22333445443 789999999999999999887643
No 15
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-15 Score=145.86 Aligned_cols=53 Identities=40% Similarity=1.012 Sum_probs=48.4
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
..+.+|+||+++|..+|++++|||.|.||..|+++|+...+..||+||..+.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34589999999999999999999999999999999999778889999998754
No 16
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.54 E-value=3.3e-14 Score=124.26 Aligned_cols=88 Identities=27% Similarity=0.387 Sum_probs=67.6
Q ss_pred EEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcceeeccCCCCceEEeEEEe
Q 014723 53 LYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFV 132 (419)
Q Consensus 53 l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~~m~g~~~~i~IPsv~I 132 (419)
+..+++.+||+++.. ..++++|+||||+||+|+|.+|++|||++||++|||||+.++. +. +.+... ..++.+++
T Consensus 35 ~~~~~~~~gC~~~~~---~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~-~~-~~~~~~-~~~~~~~~ 108 (129)
T cd02124 35 LDTSVADDACQPLPD---DTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGP-TD-QVGSDA-DSIIAAVT 108 (129)
T ss_pred cccCCCcccCcCCCc---ccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCc-cc-ccCCCC-cceeeEEe
Confidence 345578899998733 3346799999999999999999999999999999999988652 22 223222 34556666
Q ss_pred echhhHHHHHhhCCC
Q 014723 133 SKASGEKLKQYAGST 147 (419)
Q Consensus 133 s~~~G~~L~~~l~~~ 147 (419)
+++|+.|++.+..+
T Consensus 109 -~~~G~~l~~~l~~G 122 (129)
T cd02124 109 -PEDGEAWIDALAAG 122 (129)
T ss_pred -HHHHHHHHHHHhcC
Confidence 99999999887654
No 17
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.53 E-value=8.3e-15 Score=121.31 Aligned_cols=98 Identities=33% Similarity=0.405 Sum_probs=67.5
Q ss_pred CCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcceeeccCCCCceE
Q 014723 47 SGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIK 126 (419)
Q Consensus 47 ~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~~m~g~~~~i~ 126 (419)
....|.|+.+.....+...........+++|+||||+||+|+|.+|+++||++||+||||+|+.................
T Consensus 4 ~~~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~ 83 (101)
T PF02225_consen 4 GTVTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPID 83 (101)
T ss_dssp EEEEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTB
T ss_pred CCEEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcE
Confidence 34677777444433322221112234567999999999999999999999999999999999322222222223445678
Q ss_pred EeEEEeechhhHHHHHhh
Q 014723 127 IHAVFVSKASGEKLKQYA 144 (419)
Q Consensus 127 IPsv~Is~~~G~~L~~~l 144 (419)
||+++|++.+|+.|++++
T Consensus 84 iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 84 IPVVFISYEDGEALLAYI 101 (101)
T ss_dssp SEEEEE-HHHHHHHHHHH
T ss_pred EEEEEeCHHHHhhhhccC
Confidence 999999999999998874
No 18
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.41 E-value=7e-14 Score=99.32 Aligned_cols=44 Identities=48% Similarity=1.142 Sum_probs=39.4
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr 249 (419)
++|+||+++|..++.+..++|+|.||.+||.+|++.+ .+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4799999999999999999999999999999999984 5799997
No 19
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.33 E-value=4.6e-12 Score=108.78 Aligned_cols=92 Identities=40% Similarity=0.552 Sum_probs=71.3
Q ss_pred EecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCc-ceeeccCC-CCceEEeEEE
Q 014723 54 YVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDG-VLVAMAGN-SAGIKIHAVF 131 (419)
Q Consensus 54 ~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~-~~~~m~g~-~~~i~IPsv~ 131 (419)
....+.++|.+... .....+++|||||++||+|+|.+|+++|+++||+||||+|+.+.. ....+.++ .....||+++
T Consensus 25 ~~~~~~~~C~~~~~-~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~ 103 (126)
T cd00538 25 VVAGPLVGCGYGTT-DDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVG 103 (126)
T ss_pred ccccceEEEecCcc-cccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEE
Confidence 34567789988752 122356799999999999999999999999999999999987642 22222221 2456799999
Q ss_pred eechhhHHHHHhhCC
Q 014723 132 VSKASGEKLKQYAGS 146 (419)
Q Consensus 132 Is~~~G~~L~~~l~~ 146 (419)
|+.++|+.|++++..
T Consensus 104 is~~~g~~l~~~~~~ 118 (126)
T cd00538 104 ISYADGEALLSLLEA 118 (126)
T ss_pred eCHHHHHHHHHHHhc
Confidence 999999999999875
No 20
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.29 E-value=3.3e-11 Score=107.01 Aligned_cols=100 Identities=27% Similarity=0.259 Sum_probs=74.0
Q ss_pred cccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcceee
Q 014723 38 ANFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVA 117 (419)
Q Consensus 38 A~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~~ 117 (419)
..|+.+....+..+.|+.+.. |.+... ...+++||||||+||+|+|.+|+++|+++||+||||||+..+. ..
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g~---g~~~d~---~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~--~~ 86 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAGL---GTPEDF---EGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL--IP 86 (143)
T ss_pred ccCCCcCCCCCcEEEEEEccC---Cchhcc---CCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc--cc
Confidence 445555555667888777542 222111 1246799999999999999999999999999999999988652 22
Q ss_pred ccCCCCceEEeEEEeechhhHHHHHhhCC
Q 014723 118 MAGNSAGIKIHAVFVSKASGEKLKQYAGS 146 (419)
Q Consensus 118 m~g~~~~i~IPsv~Is~~~G~~L~~~l~~ 146 (419)
+.... ...||+++|++.+|+.|++++..
T Consensus 87 ~~~~~-~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 87 GTLGE-AVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred ccCCC-CCeEeEEEecHHHHHHHHHHHhC
Confidence 22111 35799999999999999999876
No 21
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.1e-12 Score=123.45 Aligned_cols=78 Identities=27% Similarity=0.674 Sum_probs=56.9
Q ss_pred ccCchhhHHhcCCcceeccccccCCCCCccceecCcc-cCC---------CeeEEecCCChhhHHhHHHHHhcCCCCCcc
Q 014723 178 FHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDY-SVG---------EKLRILPCRHKFHAFCVDSWLTSWRTFCPV 247 (419)
Q Consensus 178 ~~g~~~~~i~~lp~~~~~~~~~~~~~~~~C~ICle~~-~~~---------~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~ 247 (419)
+++..+++.+.+++...+.. ..++..|.||+|++ ..+ .+-+.|||||.||.+|++.|+++.++ ||+
T Consensus 264 ~~r~~kdl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQT-CPI 339 (491)
T COG5243 264 FRRATKDLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQT-CPI 339 (491)
T ss_pred HHHHhhHHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccC-CCc
Confidence 34556677777766554443 23478999999995 333 24578999999999999999999665 999
Q ss_pred cccc-cccCCCCC
Q 014723 248 CKRD-ARTSTGEP 259 (419)
Q Consensus 248 Cr~~-~~~~~~~p 259 (419)
||.+ +..+.++.
T Consensus 340 Cr~p~ifd~~~~~ 352 (491)
T COG5243 340 CRRPVIFDQSSPT 352 (491)
T ss_pred ccCccccccCCCC
Confidence 9999 45555433
No 22
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.15 E-value=6.9e-11 Score=120.35 Aligned_cols=111 Identities=32% Similarity=0.536 Sum_probs=83.0
Q ss_pred cccccccCCcCCCCCeeE---EEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecC
Q 014723 34 DDIEANFAPAIRGSGDCG---VLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE 110 (419)
Q Consensus 34 ~~~~A~Fg~~~~~~~~~G---~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~ 110 (419)
-...|.||.......-.. .+..++|.|.|++++.+ +++++++|.||+|+|.+|+++||++||.|++|.||.
T Consensus 56 a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~k------l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~ 129 (541)
T KOG2442|consen 56 AGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSK------LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNK 129 (541)
T ss_pred hhhhhhcCCcCCCCccccccchhhhcCCccccCCCCcc------ccceeEEEecccceeehhhhhhhhcCceEEEEEcCc
Confidence 345688987666443333 23567899999988653 489999999999999999999999999999999986
Q ss_pred CCcceeeccC---CCCceEEeEEEeechhhHHHHHhhCC-CcEEE
Q 014723 111 DDGVLVAMAG---NSAGIKIHAVFVSKASGEKLKQYAGS-TDMEI 151 (419)
Q Consensus 111 ~~~~~~~m~g---~~~~i~IPsv~Is~~~G~~L~~~l~~-~~veV 151 (419)
.+ .+.+..+ ...++.||+++|++.+|+.+.+.... ..+++
T Consensus 130 ~d-~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~ 173 (541)
T KOG2442|consen 130 KD-LLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVEL 173 (541)
T ss_pred hh-hccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEE
Confidence 64 2222222 23489999999999999999865443 33444
No 23
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.12 E-value=4e-11 Score=114.53 Aligned_cols=74 Identities=26% Similarity=0.543 Sum_probs=54.9
Q ss_pred cCchhhHHhcCCcceeccccc-cCCCCCccceecCcccCCCe-----eEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 179 HGMSRRLVKAMPSLIFTAVVE-DNCTSRTCAICLEDYSVGEK-----LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 179 ~g~~~~~i~~lp~~~~~~~~~-~~~~~~~C~ICle~~~~~~~-----~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
++..+.+++.+|....+-... +...+.+|+||+|.+.+++. ...++|+|.||..||.+|++. +.+||+||..+
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~ 226 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPF 226 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEe
Confidence 456788888998875443221 23346899999999876531 234469999999999999987 55699999877
Q ss_pred c
Q 014723 253 R 253 (419)
Q Consensus 253 ~ 253 (419)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 5
No 24
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.11 E-value=6e-10 Score=97.08 Aligned_cols=96 Identities=19% Similarity=0.099 Sum_probs=70.8
Q ss_pred CCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCC--CHHHHHHHHHHcCCceEEEeecCCCccee-eccCC--
Q 014723 47 SGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGC--SFEDKVRNAQKAGFEAAIVYDNEDDGVLV-AMAGN-- 121 (419)
Q Consensus 47 ~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~C--sF~~Kv~nAq~aGA~avIv~nn~~~~~~~-~m~g~-- 121 (419)
..+.|.++.+. .| .+-+. ...+++||||||+||.| +|.+|+++|+++||+||||||+.++.... ...+.
T Consensus 21 ~~~~~~lV~~g--~G-~~~d~---~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~ 94 (127)
T cd04819 21 GEAKGEPVDAG--YG-LPKDF---DGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTED 94 (127)
T ss_pred CCeeEEEEEeC--CC-CHHHc---CCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccC
Confidence 44688888765 22 11111 12357999999999999 99999999999999999999877653221 11122
Q ss_pred CCceEEeEEEeechhhHHHHHhhCCCc
Q 014723 122 SAGIKIHAVFVSKASGEKLKQYAGSTD 148 (419)
Q Consensus 122 ~~~i~IPsv~Is~~~G~~L~~~l~~~~ 148 (419)
.....||++.|+.++|+.|...+..+.
T Consensus 95 ~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 95 GPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 234679999999999999998887644
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.07 E-value=8.9e-11 Score=92.61 Aligned_cols=45 Identities=36% Similarity=0.840 Sum_probs=35.4
Q ss_pred CCccceecCcccCC----------CeeEEecCCChhhHHhHHHHHhcCCCCCcccc
Q 014723 204 SRTCAICLEDYSVG----------EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249 (419)
Q Consensus 204 ~~~C~ICle~~~~~----------~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr 249 (419)
++.|+||+++|.+. -.+...+|+|.||..||.+||+... +||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 45699999999433 3455668999999999999998855 699997
No 26
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4e-10 Score=105.63 Aligned_cols=61 Identities=30% Similarity=0.522 Sum_probs=47.5
Q ss_pred CCCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc--CCCCCcccccccccCCCCCCCCCC
Q 014723 201 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKRDARTSTGEPPASES 264 (419)
Q Consensus 201 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~--~~~~CP~Cr~~~~~~~~~p~~~~~ 264 (419)
.....+|.||||.-+++ +..| |||.||+.||.+||+. .+..||+||..+...+..|.....
T Consensus 44 ~~~~FdCNICLd~akdP--VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG 106 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP--VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRG 106 (230)
T ss_pred CCCceeeeeeccccCCC--EEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccC
Confidence 34568999999996655 5544 9999999999999976 344599999998877666655543
No 27
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.01 E-value=4e-10 Score=103.75 Aligned_cols=57 Identities=30% Similarity=0.560 Sum_probs=45.2
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---------------CCCCCcccccccccCCCCCCCC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---------------WRTFCPVCKRDARTSTGEPPAS 262 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---------------~~~~CP~Cr~~~~~~~~~p~~~ 262 (419)
++.+|+||++.++++ ++++|+|.||+.||.+|+.. ....||+||.++......|--.
T Consensus 17 ~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 17 GDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 468999999998776 66789999999999999852 2346999999997765544443
No 28
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.98 E-value=1.2e-09 Score=96.17 Aligned_cols=104 Identities=17% Similarity=0.150 Sum_probs=76.4
Q ss_pred ccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCC------CHHHH-------HHHHHHcCCceEE
Q 014723 39 NFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGC------SFEDK-------VRNAQKAGFEAAI 105 (419)
Q Consensus 39 ~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~C------sF~~K-------v~nAq~aGA~avI 105 (419)
.|.+..++.+++|.++.....+ .+.. .+..+++||||||.||.| +|.+| .++|+++||.|+|
T Consensus 7 ~~s~~t~~~gvta~vv~v~~~~---~~~~--~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avI 81 (134)
T cd04815 7 GGSVATPPEGITAEVVVVKSFD---ELKA--APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVL 81 (134)
T ss_pred CCCCCCCCCCcEEEEEEECCHH---HHHh--cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEE
Confidence 4566667778999988776432 1211 113467999999999999 99999 7999999999999
Q ss_pred EeecCCCcc--e-eeccCC-CCceEEeEEEeechhhHHHHHhhCCC
Q 014723 106 VYDNEDDGV--L-VAMAGN-SAGIKIHAVFVSKASGEKLKQYAGST 147 (419)
Q Consensus 106 v~nn~~~~~--~-~~m~g~-~~~i~IPsv~Is~~~G~~L~~~l~~~ 147 (419)
++|+.+... . ..+.+. .....||++.|+.++|..|...+..+
T Consensus 82 v~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g 127 (134)
T cd04815 82 IRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDADMLERLAARG 127 (134)
T ss_pred EEecCcccCCCCcCCccccCCCCCCCCEEEechhcHHHHHHHHhCC
Confidence 999753311 1 222333 33467999999999999998887754
No 29
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.94 E-value=2.4e-09 Score=98.61 Aligned_cols=115 Identities=22% Similarity=0.222 Sum_probs=77.7
Q ss_pred EecccccccCCcCCCCCeeEEEEecCCccCCC-CCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecC
Q 014723 32 SFDDIEANFAPAIRGSGDCGVLYVAEPLDACS-NLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE 110 (419)
Q Consensus 32 ~f~~~~A~Fg~~~~~~~~~G~l~~a~p~daC~-pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~ 110 (419)
++.-.+..|.+..+...++|.|+.++ .|-. .+..-....-+++|+||||+||+|.|.+|+++|+++||+|||||++.
T Consensus 12 ~~~l~~~~f~~~s~~G~v~g~lVyvn--~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 12 ELVENPGGYVAYSAAGTVTGKLVYAN--YGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred ceecccccccCCCCCCceEEEEEEcC--CCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCH
Confidence 34445556777777677899998874 3321 11100011236799999999999999999999999999999999884
Q ss_pred CCcce-------e---e-ccCC------------------C-CceEEeEEEeechhhHHHHHhhCCCc
Q 014723 111 DDGVL-------V---A-MAGN------------------S-AGIKIHAVFVSKASGEKLKQYAGSTD 148 (419)
Q Consensus 111 ~~~~~-------~---~-m~g~------------------~-~~i~IPsv~Is~~~G~~L~~~l~~~~ 148 (419)
.+... . . ..|+ . .--+||++-|+..++..|++.++...
T Consensus 90 ~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~~ 157 (183)
T cd02128 90 ADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGPV 157 (183)
T ss_pred HHcCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCCC
Confidence 22100 0 0 0110 0 12369999999999999988887653
No 30
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.7e-10 Score=107.46 Aligned_cols=50 Identities=32% Similarity=0.768 Sum_probs=43.3
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
....|.+|||...++ ..+||||+||+.||..|...+ ..||+||.++.+.+
T Consensus 238 a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccc-cCCCcccccCCCcc
Confidence 357899999998777 788999999999999999984 45999999887654
No 31
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.90 E-value=5.2e-09 Score=90.30 Aligned_cols=83 Identities=25% Similarity=0.295 Sum_probs=66.1
Q ss_pred CccCCCCCccCccccCCCcceEEEEecCCC-CHHHHHHHHHHcCCceEEEeecCCCcceeeccCCCCceEEeEEEeechh
Q 014723 58 PLDACSNLTSKVEKVSNMSSAFVLTIRGGC-SFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKAS 136 (419)
Q Consensus 58 p~daC~pl~~~~~~~~~~~~~IaLV~RG~C-sF~~Kv~nAq~aGA~avIv~nn~~~~~~~~m~g~~~~i~IPsv~Is~~~ 136 (419)
...+|++.... ..+++|||||++||.| .|.+|+++|+++||.|+|++|+..+.. .+.. ....||+++|..++
T Consensus 36 ~~~~C~~~~~~---~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~--~~~~--~~~~iP~v~I~~~~ 108 (126)
T cd02120 36 DASLCLPGSLD---PSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL--DVVA--DAHVLPAVHVDYED 108 (126)
T ss_pred ccccCCCCCCC---hhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc--eecc--cccccceEEECHHH
Confidence 34689876432 2457899999999999 999999999999999999998876521 1211 13579999999999
Q ss_pred hHHHHHhhCCC
Q 014723 137 GEKLKQYAGST 147 (419)
Q Consensus 137 G~~L~~~l~~~ 147 (419)
|+.|++|+...
T Consensus 109 g~~l~~y~~~~ 119 (126)
T cd02120 109 GTAILSYINST 119 (126)
T ss_pred HHHHHHHHHcC
Confidence 99999998754
No 32
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.88 E-value=1.6e-09 Score=75.51 Aligned_cols=45 Identities=42% Similarity=1.088 Sum_probs=37.1
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
+|+||++.+. +.+..++|+|.||..|++.|++.....||+||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 34566669999999999999987566799998754
No 33
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.79 E-value=2.6e-09 Score=73.80 Aligned_cols=39 Identities=36% Similarity=0.997 Sum_probs=33.2
Q ss_pred cceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccc
Q 014723 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 248 (419)
Q Consensus 207 C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~C 248 (419)
|+||++.+.+ .+..++|||.||.+||.+|++. +..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 8999999876 4678999999999999999999 6679998
No 34
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.70 E-value=1.6e-08 Score=81.24 Aligned_cols=50 Identities=28% Similarity=0.758 Sum_probs=38.8
Q ss_pred CCccceecCcccCC--------C--eeEEecCCChhhHHhHHHHHhcC--CCCCcccccccc
Q 014723 204 SRTCAICLEDYSVG--------E--KLRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~--------~--~~~~LpC~H~Fh~~Ci~~Wl~~~--~~~CP~Cr~~~~ 253 (419)
++.|.||+..|... + .+..-.|+|.||..||.+||... +..||+||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 68899999888522 2 34444599999999999999863 467999998753
No 35
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.70 E-value=7.4e-09 Score=72.87 Aligned_cols=39 Identities=33% Similarity=0.784 Sum_probs=30.9
Q ss_pred cceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCC---CCccc
Q 014723 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT---FCPVC 248 (419)
Q Consensus 207 C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~---~CP~C 248 (419)
|+||++.|+++ +.|+|||.|+..||..|.+.... .||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 88999999999999999976433 59988
No 36
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.69 E-value=7.2e-09 Score=75.54 Aligned_cols=47 Identities=30% Similarity=0.817 Sum_probs=38.3
Q ss_pred CCccceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
+..|.||++...+ +..+||+|. ||..|+.+|++. +..||+||+++..
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhcC
Confidence 4689999998654 688899999 999999999996 5569999998753
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.1e-09 Score=110.58 Aligned_cols=55 Identities=33% Similarity=0.742 Sum_probs=46.2
Q ss_pred CCCccceecCcccCCCe--eEEecCCChhhHHhHHHHHhcCCCCCcccccccccCCCC
Q 014723 203 TSRTCAICLEDYSVGEK--LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 258 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~--~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~ 258 (419)
.+..|+||+|++..+.+ .+.|+|+|+||..|+++|+++.+ +||+||..+......
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q-tCP~CR~~~~~~~~~ 346 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ-TCPTCRTVLYDYVLW 346 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC-cCCcchhhhhccccc
Confidence 46899999999988755 78899999999999999999944 599999966655443
No 38
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.5e-08 Score=91.41 Aligned_cols=51 Identities=25% Similarity=0.597 Sum_probs=41.3
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+...|+|||+.+..... .-..|||+||..||+..++..+. ||+|++++...
T Consensus 130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~-CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNK-CPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCC-CCCcccccchh
Confidence 44789999999876533 23569999999999999998555 99999987654
No 39
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.66 E-value=1.2e-08 Score=71.01 Aligned_cols=40 Identities=43% Similarity=1.035 Sum_probs=34.9
Q ss_pred cceecCcccCCCeeEEecCCChhhHHhHHHHHh-cCCCCCccc
Q 014723 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT-SWRTFCPVC 248 (419)
Q Consensus 207 C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~-~~~~~CP~C 248 (419)
|+||++.+..+ ...++|+|.||..||.+|++ .....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998766 46899999999999999998 556679998
No 40
>PHA02926 zinc finger-like protein; Provisional
Probab=98.64 E-value=2.1e-08 Score=93.63 Aligned_cols=53 Identities=26% Similarity=0.714 Sum_probs=39.1
Q ss_pred CCCCccceecCcccCC-----CeeEEe-cCCChhhHHhHHHHHhcC-----CCCCccccccccc
Q 014723 202 CTSRTCAICLEDYSVG-----EKLRIL-PCRHKFHAFCVDSWLTSW-----RTFCPVCKRDART 254 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~-----~~~~~L-pC~H~Fh~~Ci~~Wl~~~-----~~~CP~Cr~~~~~ 254 (419)
..+.+|+||+|..-.. ....+| +|+|.||..||..|...+ ...||+||..+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 3468999999986332 122344 599999999999999753 2349999987653
No 41
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.63 E-value=3.1e-08 Score=70.30 Aligned_cols=44 Identities=32% Similarity=0.815 Sum_probs=37.7
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccc
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 250 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~ 250 (419)
.|.||+++|...+....++|+|.||..|++++. .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999666678899999999999999998 33556999985
No 42
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.61 E-value=4e-08 Score=66.03 Aligned_cols=39 Identities=44% Similarity=1.125 Sum_probs=33.0
Q ss_pred cceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccc
Q 014723 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 248 (419)
Q Consensus 207 C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~C 248 (419)
|+||++.. +....++|+|.||..|++.|++..+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 4468889999999999999998545679987
No 43
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.48 E-value=1.1e-07 Score=72.04 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=40.0
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
..|+||++.|.++ ..++|||.|++.||.+|++. +..||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 4699999999887 67899999999999999988 5569999987743
No 44
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.34 E-value=2.5e-07 Score=94.59 Aligned_cols=49 Identities=31% Similarity=0.763 Sum_probs=41.9
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
....|+||++.|..+ ++++|+|.||..||..|+... ..||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccc
Confidence 467999999999876 578999999999999999874 4699999987653
No 45
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.7e-07 Score=88.21 Aligned_cols=51 Identities=29% Similarity=0.712 Sum_probs=43.0
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHH-HHhcCCCCCcccccccccCC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDS-WLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~-Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
.+..|.||+|....+ ..++|||+||+.||-. |-+.+-..||+||+.+.+.+
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 468999999998766 7788999999999999 87775555999999887654
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.30 E-value=2.6e-07 Score=65.31 Aligned_cols=39 Identities=38% Similarity=0.780 Sum_probs=22.8
Q ss_pred cceecCcccCCC-eeEEecCCChhhHHhHHHHHhcC---CCCCc
Q 014723 207 CAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSW---RTFCP 246 (419)
Q Consensus 207 C~ICle~~~~~~-~~~~LpC~H~Fh~~Ci~~Wl~~~---~~~CP 246 (419)
|+||+| |...+ .-++|+|||.|+++||++|+... ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86644 45779999999999999999853 34576
No 47
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.29 E-value=6.7e-07 Score=70.35 Aligned_cols=49 Identities=24% Similarity=0.672 Sum_probs=33.6
Q ss_pred cceecCcccCCCeeEE--ecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 207 CAICLEDYSVGEKLRI--LPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 207 C~ICle~~~~~~~~~~--LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
|+-|.-.+..+++..+ =-|.|.||..||.+||.. +..||+||++..-.+
T Consensus 34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~~ 84 (88)
T COG5194 34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLAD 84 (88)
T ss_pred CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEEec
Confidence 3333333334443332 239999999999999999 556999999875443
No 48
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.1e-07 Score=87.77 Aligned_cols=55 Identities=31% Similarity=0.767 Sum_probs=43.6
Q ss_pred CCCCCccceecCcccCC-------CeeEEecCCChhhHHhHHHHHhc-CCCCCcccccccccC
Q 014723 201 NCTSRTCAICLEDYSVG-------EKLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDARTS 255 (419)
Q Consensus 201 ~~~~~~C~ICle~~~~~-------~~~~~LpC~H~Fh~~Ci~~Wl~~-~~~~CP~Cr~~~~~~ 255 (419)
..++..|+||-..+... |+.-+|.|+|+||..||+-|-.. ++.+||.||+.+.-+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 34578999999777444 37889999999999999999753 355699999987644
No 49
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.24 E-value=3.7e-06 Score=74.63 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=47.8
Q ss_pred CeeEEEEecC---CccCCCCCccCccccCCCcceEEEEecCCC------------------CHHHHHHHHHHcCCceEEE
Q 014723 48 GDCGVLYVAE---PLDACSNLTSKVEKVSNMSSAFVLTIRGGC------------------SFEDKVRNAQKAGFEAAIV 106 (419)
Q Consensus 48 ~~~G~l~~a~---p~daC~pl~~~~~~~~~~~~~IaLV~RG~C------------------sF~~Kv~nAq~aGA~avIv 106 (419)
.+.|.|+.+. ...+|.-.+. ..-|++||||||.||+| +|..|+++|+++||+|||+
T Consensus 19 ~~~aelVfvGyGi~a~~~~~dDY---ag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIi 95 (142)
T cd04814 19 IKDAPLVFVGYGIKAPELSWDDY---AGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLI 95 (142)
T ss_pred ccceeeEEecCCcCCCCCChhhc---CCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEE
Confidence 4567776654 2345664332 23478999999999999 6999999999999999999
Q ss_pred eecCCC
Q 014723 107 YDNEDD 112 (419)
Q Consensus 107 ~nn~~~ 112 (419)
+|+.+.
T Consensus 96 i~~~~~ 101 (142)
T cd04814 96 VHELAP 101 (142)
T ss_pred EeCCCc
Confidence 998654
No 50
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.24 E-value=3.7e-06 Score=75.45 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=49.6
Q ss_pred CCeeEEEEecC---CccCCCCCccCccccCCCcceEEEEecCC------------------CCHHHHHHHHHHcCCceEE
Q 014723 47 SGDCGVLYVAE---PLDACSNLTSKVEKVSNMSSAFVLTIRGG------------------CSFEDKVRNAQKAGFEAAI 105 (419)
Q Consensus 47 ~~~~G~l~~a~---p~daC~pl~~~~~~~~~~~~~IaLV~RG~------------------CsF~~Kv~nAq~aGA~avI 105 (419)
..++|.|+.+. ..++|..... ..-+++||||||.||+ |+|..|+++|+++||+|||
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy---~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI 94 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDY---AGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVI 94 (151)
T ss_pred CCceEeEEEecCCcCccccchhhc---cCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEE
Confidence 45788887765 3456764432 2347899999999884 9999999999999999999
Q ss_pred EeecCCC
Q 014723 106 VYDNEDD 112 (419)
Q Consensus 106 v~nn~~~ 112 (419)
|||+...
T Consensus 95 v~~d~~~ 101 (151)
T cd04822 95 VVNGPNS 101 (151)
T ss_pred EEeCCcc
Confidence 9998654
No 51
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.4e-07 Score=70.28 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=36.4
Q ss_pred CCccceecCcccCC--------CeeE-Ee-cCCChhhHHhHHHHHhc--CCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVG--------EKLR-IL-PCRHKFHAFCVDSWLTS--WRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~--------~~~~-~L-pC~H~Fh~~Ci~~Wl~~--~~~~CP~Cr~~~~ 253 (419)
+++|.||+-.|..- |..- ++ -|.|.||..||.+|+.. .+..||+||++..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45899999888432 2211 22 29999999999999965 3456999998753
No 52
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.20 E-value=5.2e-06 Score=73.29 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=50.1
Q ss_pred CCCCeeEEEEecC---CccCCCCCccCccccCCCcceEEEEecCCCC------------HHHHHHHHHHcCCceEEEeec
Q 014723 45 RGSGDCGVLYVAE---PLDACSNLTSKVEKVSNMSSAFVLTIRGGCS------------FEDKVRNAQKAGFEAAIVYDN 109 (419)
Q Consensus 45 ~~~~~~G~l~~a~---p~daC~pl~~~~~~~~~~~~~IaLV~RG~Cs------------F~~Kv~nAq~aGA~avIv~nn 109 (419)
+...+.|.|+.+. ..++|.-.+. ..-+++||||||.+|.|. +.+|+++|+++||+|||||++
T Consensus 18 ~~g~v~gelVfvGyG~~~~~~~~~Dy---~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 18 PAASVEAPLVFVGYGLVAPELGHDDY---AGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred CCCCceEeEEEecCCcCccCcCHhhc---cCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 3356788887765 3356664332 234789999999999995 889999999999999999998
Q ss_pred CCC
Q 014723 110 EDD 112 (419)
Q Consensus 110 ~~~ 112 (419)
...
T Consensus 95 ~~~ 97 (137)
T cd04820 95 PRS 97 (137)
T ss_pred Ccc
Confidence 654
No 53
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.19 E-value=5.4e-06 Score=78.81 Aligned_cols=61 Identities=25% Similarity=0.174 Sum_probs=46.5
Q ss_pred CCeeEEEEecCCccCCCCCcc--CccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecC
Q 014723 47 SGDCGVLYVAEPLDACSNLTS--KVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE 110 (419)
Q Consensus 47 ~~~~G~l~~a~p~daC~pl~~--~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~ 110 (419)
..+.|.|+.+. .|..-+. .....-+++||||||++|.|.+.+|+++|+++||+|||||++.
T Consensus 43 g~v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 43 GNVTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CCceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 45788888876 3332211 0112346799999999999999999999999999999999863
No 54
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=7.4e-07 Score=91.27 Aligned_cols=52 Identities=27% Similarity=0.846 Sum_probs=40.5
Q ss_pred CCCccceecCcccCC--------------CeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVG--------------EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~--------------~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
....|+||+.+...- ......||.|+||..|++.|+...+..||+||.++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 347899999776321 1234569999999999999999767779999998753
No 55
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.14 E-value=2.4e-06 Score=62.19 Aligned_cols=43 Identities=28% Similarity=0.770 Sum_probs=33.2
Q ss_pred ccceecCcccCCCeeEEecCC-----ChhhHHhHHHHHhcC-CCCCcccc
Q 014723 206 TCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTSW-RTFCPVCK 249 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~-----H~Fh~~Ci~~Wl~~~-~~~CP~Cr 249 (419)
.|.||++.. .++...+.||. |.+|..|+++|+... +..||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999943 34445578985 889999999999764 45799995
No 56
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.05 E-value=1.4e-06 Score=68.57 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=38.8
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
...|+||.+-|.++ +++||||.|.+.||..|+..+...||+|+..+...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 46899999999988 78899999999999999999667799998877654
No 57
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.98 E-value=9.1e-06 Score=72.43 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=46.4
Q ss_pred CCCeeEEEEecCC--ccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCC
Q 014723 46 GSGDCGVLYVAEP--LDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDD 112 (419)
Q Consensus 46 ~~~~~G~l~~a~p--~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~ 112 (419)
...++|.++.++= .+-=+.|.. .-+++|||||++.|...+..|++|||++||.|||||.+..+
T Consensus 12 sG~Vtg~~VYvNyG~~eDf~~L~~----~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 12 KGTLQAEVVDVQYGSVEDLRRIRD----NMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCceEEEEEEecCCCHHHHHHHHh----CCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 4557888887761 100011111 13579999999999999999999999999999999988544
No 58
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.95 E-value=3e-06 Score=83.35 Aligned_cols=48 Identities=31% Similarity=0.817 Sum_probs=42.6
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
-..|.||.|-|..+ .+.||+|.||..||...|.. ++.||.|+.++.+.
T Consensus 23 lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCc---eeccccchHHHHHHHHHhcc-CCCCCceecccchh
Confidence 46899999999988 78899999999999999988 56699999887665
No 59
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.93 E-value=2.7e-06 Score=92.66 Aligned_cols=53 Identities=30% Similarity=0.751 Sum_probs=38.2
Q ss_pred CCCCCccceecCcccCCC----eeEEecCCChhhHHhHHHHHhc-CCCCCcccccccc
Q 014723 201 NCTSRTCAICLEDYSVGE----KLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDAR 253 (419)
Q Consensus 201 ~~~~~~C~ICle~~~~~~----~~~~LpC~H~Fh~~Ci~~Wl~~-~~~~CP~Cr~~~~ 253 (419)
-.+-.+|+||+..+..-| ..+.-.|.|+||..|+.+|+.. .+.+||+||.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 345689999996664221 1122239999999999999986 4567999997653
No 60
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.92 E-value=7.7e-06 Score=80.84 Aligned_cols=53 Identities=26% Similarity=0.540 Sum_probs=39.2
Q ss_pred CCccceecCc-ccCCC-eeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 204 SRTCAICLED-YSVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 204 ~~~C~ICle~-~~~~~-~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
+..|+||..+ +..++ ++.+-+|||.||..||+..+......||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 5789999975 33333 23333799999999999977665667999988776553
No 61
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=5.9e-06 Score=85.56 Aligned_cols=53 Identities=30% Similarity=0.587 Sum_probs=40.2
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC----CCCCcccccccccCCCCC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW----RTFCPVCKRDARTSTGEP 259 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~----~~~CP~Cr~~~~~~~~~p 259 (419)
+..|+|||+....+ +++. |||+||..||-..+... -..||+|+..+...+..|
T Consensus 186 ~~~CPICL~~~~~p--~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP--VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcc--cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 67899999997766 3444 99999999998866432 235999999888754433
No 62
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.5e-06 Score=80.17 Aligned_cols=43 Identities=37% Similarity=0.799 Sum_probs=38.9
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr 249 (419)
+...|+||++.|..+ +++||+|.||..||..|.. ....||.||
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 468999999999988 8899999999999999988 456799999
No 63
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.83 E-value=7.9e-06 Score=78.97 Aligned_cols=48 Identities=33% Similarity=0.735 Sum_probs=41.3
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
-..|-||-+.|..+ ...+|||.||..||...|.. +..||+||.+..+.
T Consensus 25 ~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheeecc---eecccccchhHHHHHHHhcC-CCCCccccccHHhh
Confidence 47899999999887 67789999999999999998 55699999876543
No 64
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.9e-05 Score=65.26 Aligned_cols=28 Identities=32% Similarity=0.952 Sum_probs=24.1
Q ss_pred cCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 224 PCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 224 pC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
.|.|.||..||.+||++++ .||+|.++-
T Consensus 80 ~CNHaFH~hCisrWlktr~-vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN-VCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcC-cCCCcCcce
Confidence 3999999999999999954 599997753
No 65
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.74 E-value=5.4e-06 Score=64.85 Aligned_cols=50 Identities=28% Similarity=0.668 Sum_probs=23.2
Q ss_pred CCccceecCcccCCCeeEEe-----cCCChhhHHhHHHHHhc---CC-------CCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRIL-----PCRHKFHAFCVDSWLTS---WR-------TFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L-----pC~H~Fh~~Ci~~Wl~~---~~-------~~CP~Cr~~~~ 253 (419)
+.+|.||++.+...+.+-.+ .|+..||..||.+||.. .+ ..||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46899999887633222111 38899999999999953 11 14999998774
No 66
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.74 E-value=9.9e-06 Score=82.51 Aligned_cols=47 Identities=34% Similarity=0.818 Sum_probs=37.8
Q ss_pred CCccceecCcccCC-CeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~-~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
-.+|+||||.|... ..++...|.|.||..|+.+|-.. +||+||....
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 47899999999544 24566669999999999999654 7999998654
No 67
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=3.1e-05 Score=77.25 Aligned_cols=50 Identities=28% Similarity=0.668 Sum_probs=40.0
Q ss_pred CCCCccceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCcccccccccC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+...+|.||+.+-.+ ..+|||.|. .|..|.+.-.-+ ...||+||+++.+.
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHh-hcCCCccccchHhh
Confidence 346899999998655 489999998 999999886544 34599999988654
No 68
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=3.2e-05 Score=75.40 Aligned_cols=50 Identities=24% Similarity=0.522 Sum_probs=41.7
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
..+|.||+....-+ ..|+|+|+||..||+--....+..|++||.++....
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 47899999987666 778999999999999866665566999999987653
No 69
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=1.7e-05 Score=78.83 Aligned_cols=53 Identities=25% Similarity=0.469 Sum_probs=42.4
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
..+..|+|||+-++.. .....|.|.||..||.+-+......||.||+.+....
T Consensus 41 ~~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 3468999999987654 2233499999999999999988888999999876553
No 70
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=5.9e-05 Score=76.18 Aligned_cols=49 Identities=35% Similarity=0.927 Sum_probs=38.5
Q ss_pred CCccceecCcccCC--CeeEEecCCChhhHHhHHHHHhc-CCCCCccccccc
Q 014723 204 SRTCAICLEDYSVG--EKLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~--~~~~~LpC~H~Fh~~Ci~~Wl~~-~~~~CP~Cr~~~ 252 (419)
..+|+||++.++.. ..+..|.|+|.|...||++||.+ ....||.|..+.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 57899999999765 34556679999999999999953 234699997543
No 71
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=8.4e-05 Score=74.60 Aligned_cols=49 Identities=29% Similarity=0.698 Sum_probs=35.6
Q ss_pred CccceecCcccC-CCeeEEec-CCChhhHHhHHHHHhcCC--CCCccccccccc
Q 014723 205 RTCAICLEDYSV-GEKLRILP-CRHKFHAFCVDSWLTSWR--TFCPVCKRDART 254 (419)
Q Consensus 205 ~~C~ICle~~~~-~~~~~~Lp-C~H~Fh~~Ci~~Wl~~~~--~~CP~Cr~~~~~ 254 (419)
..|.|| +++.+ .+.+.-+. |||+||..|+..|+.... ..||.|+-.+..
T Consensus 5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 579999 55544 34555555 999999999999997632 259999854443
No 72
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0012 Score=61.95 Aligned_cols=55 Identities=22% Similarity=0.570 Sum_probs=43.8
Q ss_pred CCCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC-------CCCCcccccccccCC
Q 014723 201 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-------RTFCPVCKRDARTST 256 (419)
Q Consensus 201 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~-------~~~CP~Cr~~~~~~~ 256 (419)
.+-...|..|-..+..+|.++.. |.|.||++|+.+|-... --+||-|..++++..
T Consensus 47 sDY~pNC~LC~t~La~gdt~RLv-CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTTRLV-CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred cCCCCCCceeCCccccCcceeeh-hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 33457899999999999887755 99999999999998431 125999999988763
No 73
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.34 E-value=3.9e-05 Score=82.55 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=43.5
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+....|++|+..+.++......+|+|.||..||..|-+.-+ +||+||..+...
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq-TCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ-TCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc-cCchhhhhhhee
Confidence 34567999999988887777778999999999999998745 599999876543
No 74
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.27 E-value=0.00012 Score=71.17 Aligned_cols=55 Identities=29% Similarity=0.751 Sum_probs=44.2
Q ss_pred ccCCCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHh------------------c----CCCCCcccccccc
Q 014723 199 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT------------------S----WRTFCPVCKRDAR 253 (419)
Q Consensus 199 ~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~------------------~----~~~~CP~Cr~~~~ 253 (419)
+.+.....|.|||--|..++...+.+|.|.||..|+..+|+ . ....||+||..+.
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 34445688999999999999999999999999999988771 1 1235999998764
No 75
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00014 Score=73.24 Aligned_cols=52 Identities=29% Similarity=0.823 Sum_probs=38.7
Q ss_pred CCCCccceecCcccCCC----eeEEec-CCChhhHHhHHHHHhcCC------CCCcccccccc
Q 014723 202 CTSRTCAICLEDYSVGE----KLRILP-CRHKFHAFCVDSWLTSWR------TFCPVCKRDAR 253 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~----~~~~Lp-C~H~Fh~~Ci~~Wl~~~~------~~CP~Cr~~~~ 253 (419)
..+.+|.||+|...+.- ...+|| |.|.||..||.+|-...+ ..||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34689999999875442 134456 999999999999984433 46999997553
No 76
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.17 E-value=8.3e-05 Score=56.65 Aligned_cols=47 Identities=28% Similarity=0.619 Sum_probs=24.5
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
-.|.+|.+-|..+ +....|.|+||..||..-+.. .||+|+.+...++
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHH
Confidence 5799999998766 555569999999999886554 5999998876554
No 77
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00014 Score=53.34 Aligned_cols=47 Identities=23% Similarity=0.540 Sum_probs=35.1
Q ss_pred CCccceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
+++|.||+|.--+. +.-.|||. .|.+|-.+-++..+..||+||+++.
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 48999999974433 33359998 8999976655545667999999774
No 78
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00022 Score=77.37 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=40.1
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
..|+.|-+.+.+. ++..|+|.||..||.+-+..++..||.|...+...+
T Consensus 644 LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 6799999776654 555599999999999999887778999988775443
No 79
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.94 E-value=0.0005 Score=69.18 Aligned_cols=47 Identities=34% Similarity=0.808 Sum_probs=39.1
Q ss_pred CCccceecCcccC-CCeeEEecCCChhhHHhHHHHHhcCC-CCCccccc
Q 014723 204 SRTCAICLEDYSV-GEKLRILPCRHKFHAFCVDSWLTSWR-TFCPVCKR 250 (419)
Q Consensus 204 ~~~C~ICle~~~~-~~~~~~LpC~H~Fh~~Ci~~Wl~~~~-~~CP~Cr~ 250 (419)
+..|..|-|.+.. ++.+..|||.|+||..|+.+.|+.+- .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 5689999999854 46888999999999999999997632 35999984
No 80
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.77 E-value=0.0011 Score=75.33 Aligned_cols=73 Identities=22% Similarity=0.441 Sum_probs=52.8
Q ss_pred hhhHHhcCCcceeccccccCCCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC---------CCCCccccccc
Q 014723 182 SRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW---------RTFCPVCKRDA 252 (419)
Q Consensus 182 ~~~~i~~lp~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~---------~~~CP~Cr~~~ 252 (419)
-+....-+|-+.-++....++.++.|-||+.+--.....++|.|+|+||..|...-|+.+ -..||+|+.++
T Consensus 3464 vkNEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3464 VKNEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred ccchhhcccccccChhhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 344555666666555555666789999999665555678899999999999998755431 12599999877
Q ss_pred cc
Q 014723 253 RT 254 (419)
Q Consensus 253 ~~ 254 (419)
..
T Consensus 3544 nH 3545 (3738)
T KOG1428|consen 3544 NH 3545 (3738)
T ss_pred hh
Confidence 53
No 81
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.74 E-value=0.00057 Score=51.28 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=29.6
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc-CCCCCcc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-WRTFCPV 247 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~-~~~~CP~ 247 (419)
...|+|.+..|+++ ++...|+|.|-++.|.+|++. ....||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 57899999998866 777789999999999999943 3456998
No 82
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.63 E-value=0.00093 Score=69.55 Aligned_cols=57 Identities=23% Similarity=0.518 Sum_probs=42.5
Q ss_pred cccCCCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc----CCCCCcccccccccCCC
Q 014723 198 VEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRDARTSTG 257 (419)
Q Consensus 198 ~~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~----~~~~CP~Cr~~~~~~~~ 257 (419)
..++.+..+|.+|-|+-++. ....|.|.||+.||+++... .+.+||+|...+.-...
T Consensus 530 ~~enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls 590 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS 590 (791)
T ss_pred CccccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence 34455678999999885544 55669999999999998843 35679999876654433
No 83
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0011 Score=68.32 Aligned_cols=49 Identities=27% Similarity=0.626 Sum_probs=41.4
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
..+.+|.||+.-+..+ +.+||||.||..||+.-+.. ...||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhcc-CCCCccccccccc
Confidence 3568999999888776 67799999999999997664 6669999998876
No 84
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0009 Score=59.87 Aligned_cols=28 Identities=39% Similarity=0.905 Sum_probs=26.5
Q ss_pred CCccceecCcccCCCeeEEecCCChhhH
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHA 231 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~ 231 (419)
..+|.||||+++.++.+..|||-++||+
T Consensus 177 kGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 177 KGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred CCcEEEEhhhccCCCceeccceEEEeec
Confidence 5789999999999999999999999996
No 85
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.45 E-value=0.0014 Score=57.23 Aligned_cols=35 Identities=20% Similarity=0.484 Sum_probs=30.6
Q ss_pred CCccceecCcccCCCeeEEecCC------ChhhHHhHHHHH
Q 014723 204 SRTCAICLEDYSVGEKLRILPCR------HKFHAFCVDSWL 238 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~------H~Fh~~Ci~~Wl 238 (419)
..+|.||++.+...+.++.++|+ |.||.+|+++|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 47899999999886668888886 899999999994
No 86
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.16 E-value=0.0064 Score=54.55 Aligned_cols=49 Identities=20% Similarity=0.603 Sum_probs=36.7
Q ss_pred CCCccceecCcccCCCeeEEecCCC-----hhhHHhHHHHHhc-CCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRH-----KFHAFCVDSWLTS-WRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H-----~Fh~~Ci~~Wl~~-~~~~CP~Cr~~~~~~ 255 (419)
.+..|-||.++-. +. .-||.. ..|.+|++.|+.. +...|++|+.++.-.
T Consensus 7 ~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4689999998843 22 247754 5699999999975 355699999887654
No 87
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0028 Score=64.41 Aligned_cols=47 Identities=30% Similarity=0.602 Sum_probs=38.0
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc-------CCCCCcccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-------WRTFCPVCK 249 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~-------~~~~CP~Cr 249 (419)
.-..|.||+++....+....|||+|+||+.|++..+.. ....||-|+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 35789999999877688999999999999999999843 233587554
No 88
>PHA02862 5L protein; Provisional
Probab=96.13 E-value=0.0052 Score=54.15 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=36.0
Q ss_pred CCccceecCcccCCCeeEEecCCC-----hhhHHhHHHHHhc-CCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRH-----KFHAFCVDSWLTS-WRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H-----~Fh~~Ci~~Wl~~-~~~~CP~Cr~~~~~~ 255 (419)
++.|-||+++-. +. .-||.. ..|.+|+.+|+.. ++..|++|+.++.-.
T Consensus 2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 468999999843 22 357754 6899999999975 455799999987644
No 89
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.08 E-value=0.0028 Score=64.11 Aligned_cols=47 Identities=30% Similarity=0.772 Sum_probs=37.3
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC-CCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~-~~~CP~Cr~~~~ 253 (419)
-..|-||-|.= ..+++-||||..|..|+..|-... ...||.||.++-
T Consensus 369 FeLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 36799999862 346778999999999999998543 446999998764
No 90
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.99 E-value=0.0035 Score=64.83 Aligned_cols=54 Identities=24% Similarity=0.539 Sum_probs=43.1
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCCCC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 258 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~ 258 (419)
..+..|+||...+.++ +....|+|.||..|+.+|+.. +..||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCC--CCCCCCCCcccccccchhhcc-CcCCcccccccchhhcc
Confidence 3468899999998887 222579999999999999998 55699998877655443
No 91
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.008 Score=58.26 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=39.0
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc-CCCCCcccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~-~~~~CP~Cr~~~~ 253 (419)
.+.+|++|-+.-+.+ ....+|+|+||.-||.+-+.. -..+||.|...+.
T Consensus 238 ~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 468999999997766 566789999999999987653 2347999977665
No 92
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.28 E-value=0.0073 Score=43.45 Aligned_cols=41 Identities=37% Similarity=0.854 Sum_probs=26.9
Q ss_pred cceecCcccCCCeeEEecCCC-----hhhHHhHHHHHhc-CCCCCccc
Q 014723 207 CAICLEDYSVGEKLRILPCRH-----KFHAFCVDSWLTS-WRTFCPVC 248 (419)
Q Consensus 207 C~ICle~~~~~~~~~~LpC~H-----~Fh~~Ci~~Wl~~-~~~~CP~C 248 (419)
|-||+++-...+ .-+.||.. ..|..|+.+|+.. .+..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779998866554 34567653 6899999999975 34569887
No 93
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.19 E-value=0.023 Score=51.37 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=32.4
Q ss_pred cCCCcceEEEEecCCCCH-------------------HHHHHHHHHcCCceEEEeecCC
Q 014723 72 VSNMSSAFVLTIRGGCSF-------------------EDKVRNAQKAGFEAAIVYDNED 111 (419)
Q Consensus 72 ~~~~~~~IaLV~RG~CsF-------------------~~Kv~nAq~aGA~avIv~nn~~ 111 (419)
.-|++||||||.+|+=.| ..|.+.|+++||+|||++++..
T Consensus 45 g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 45 GLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 457899999999876433 3599999999999999997643
No 94
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.13 E-value=0.013 Score=42.34 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=21.9
Q ss_pred cceecCcccCCCeeEEec--CCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 207 CAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 207 C~ICle~~~~~~~~~~Lp--C~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
|++|.|++... ....+| |++..+..|...-++.....||-||+++
T Consensus 1 cp~C~e~~d~~-d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET-DKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC-CTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccC-CCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999998322 223445 7899999998887765566799999864
No 95
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.08 E-value=0.022 Score=55.77 Aligned_cols=44 Identities=25% Similarity=0.520 Sum_probs=35.0
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 250 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~ 250 (419)
..|+.|..-+..+ ++.--|+|.||.+||..-|......||.|.+
T Consensus 275 LkCplc~~Llrnp--~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP--MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc--ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6799998877665 3332389999999999998876677999965
No 96
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.00 E-value=0.01 Score=54.89 Aligned_cols=44 Identities=27% Similarity=0.604 Sum_probs=36.7
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 251 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~ 251 (419)
...|.||-++|+.+ ++..|||.||..|.-.-++.. ..|-+|.+.
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKG-DECGVCGKA 239 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccC-Ccceecchh
Confidence 46899999999887 667799999999998877774 459999764
No 97
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.96 E-value=0.0069 Score=60.12 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=38.9
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
..+|.+|-.-|-+.. .+.-|-|.||+.||-+.|+. ...||.|...+..
T Consensus 15 ~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 15 HITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHK 62 (331)
T ss_pred ceehhhccceeecch--hHHHHHHHHHHHHHHHHHHH-hccCCccceeccC
Confidence 578999998887762 34459999999999999998 5569999876543
No 98
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.021 Score=57.43 Aligned_cols=45 Identities=27% Similarity=0.635 Sum_probs=32.8
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
...+.|.||+++..+ ..-+||||+-| |..--. +...||+||+.+.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 345789999998765 58889999855 654433 2445999998664
No 99
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.59 E-value=0.015 Score=48.25 Aligned_cols=32 Identities=25% Similarity=0.685 Sum_probs=27.5
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHH
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVD 235 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~ 235 (419)
.+..|++|-..+.. ......||+|+||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 35789999999977 567888999999999975
No 100
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.032 Score=53.33 Aligned_cols=52 Identities=15% Similarity=0.292 Sum_probs=43.7
Q ss_pred CCccceecCcccCCCeeEEe-cCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 204 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
...|+||.+.+++...+..| ||||+|+.+|+++.+.... .||+|-+++.+.+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCcccc
Confidence 47899999999998877777 5999999999999887744 4999988776543
No 101
>PHA03096 p28-like protein; Provisional
Probab=94.50 E-value=0.02 Score=56.58 Aligned_cols=36 Identities=36% Similarity=0.930 Sum_probs=28.7
Q ss_pred CccceecCcccCC----CeeEEec-CCChhhHHhHHHHHhc
Q 014723 205 RTCAICLEDYSVG----EKLRILP-CRHKFHAFCVDSWLTS 240 (419)
Q Consensus 205 ~~C~ICle~~~~~----~~~~~Lp-C~H~Fh~~Ci~~Wl~~ 240 (419)
..|.||+|..... ..-..|+ |.|.||..||..|...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 6899999887543 2344676 9999999999999864
No 102
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.46 E-value=0.037 Score=55.25 Aligned_cols=65 Identities=22% Similarity=0.492 Sum_probs=45.1
Q ss_pred hhHHhcCCcceeccccccCCCCCccceecCcccCCCeeEEecCCChhhHHhHHHH--HhcCCCCCcccccc
Q 014723 183 RRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW--LTSWRTFCPVCKRD 251 (419)
Q Consensus 183 ~~~i~~lp~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~W--l~~~~~~CP~Cr~~ 251 (419)
+..+...|.+......+...+...|.||-+..+ ....+||+|..|-.|--.- |-. +..||+||.+
T Consensus 40 KNnlsaEPnlttsSaddtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE 106 (493)
T COG5236 40 KNNLSAEPNLTTSSADDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYM-QKGCPLCRTE 106 (493)
T ss_pred ccccccCCccccccccccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHh-ccCCCccccc
Confidence 444455566555555555556688999998864 4588999999999997542 333 3359999975
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.39 E-value=0.031 Score=55.66 Aligned_cols=53 Identities=23% Similarity=0.620 Sum_probs=37.2
Q ss_pred CCCccceecCcccCCCe-eEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+++.|+.|+|+|...|+ ..--|||...|.-|-..--+.-+.+||-||+.+.+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 35679999999976653 334468877777775554444566899999876543
No 104
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.20 E-value=0.018 Score=63.41 Aligned_cols=48 Identities=29% Similarity=0.658 Sum_probs=35.1
Q ss_pred CCCccceecCcccCCCee-EEecCCChhhHHhHHHHHhcC------CCCCccccc
Q 014723 203 TSRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSW------RTFCPVCKR 250 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~-~~LpC~H~Fh~~Ci~~Wl~~~------~~~CP~Cr~ 250 (419)
+..+|.||+|.+...+.+ .--.|.|+||..||++|-... .-.||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 468999999998655422 122388999999999998541 115999974
No 105
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.95 E-value=0.029 Score=41.57 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=33.1
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
...|..|...=. +-.++||+|+.+..|.+-|- -+-||.|.+++...+
T Consensus 7 ~~~~~~~~~~~~---~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGT---KGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEcccccc---ccccccccceeeccccChhh---ccCCCCCCCcccCCC
Confidence 355666765533 34789999999999977652 235999988876543
No 106
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.038 Score=54.66 Aligned_cols=49 Identities=35% Similarity=0.760 Sum_probs=40.8
Q ss_pred CCccceecCcccCCC---eeEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 204 SRTCAICLEDYSVGE---KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~~---~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
-..|.||-++|...+ .-+.|.|||.|+..|+.+-+......||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 367999999997763 3456779999999999988887777799999875
No 107
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.62 E-value=0.029 Score=53.59 Aligned_cols=46 Identities=28% Similarity=0.666 Sum_probs=34.5
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
.|.-|.---. ++....+.|.|+||..|...-... .||+||+.+...
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~~~---~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASSPD---VCPLCKKSIRII 50 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCCcc---ccccccceeeee
Confidence 4776765433 778889999999999998664332 699999986544
No 108
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.019 Score=56.10 Aligned_cols=43 Identities=28% Similarity=0.597 Sum_probs=33.0
Q ss_pred CCccceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|+||++.-.+ ...|+|||. -|.+|-+. -..||+||+.+..
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKR-----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhccc-----cccCchHHHHHHH
Confidence 5689999997544 588999997 78888644 2369999987754
No 109
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.12 Score=47.25 Aligned_cols=51 Identities=25% Similarity=0.666 Sum_probs=34.3
Q ss_pred CCccceecCcccCC----CeeEEecCCChhhHHhHHHHHhc----CCC------CCccccccccc
Q 014723 204 SRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTS----WRT------FCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~Ci~~Wl~~----~~~------~CP~Cr~~~~~ 254 (419)
-..|.||+.---+| +..--..|+.-||.-|+..||+. ++. .||.|-.++.-
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 35688888433233 22334569999999999999943 121 39999877653
No 110
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.067 Score=53.66 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=38.8
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
.+++.|+||.-.-- .....||+|.-|..||.+-+...+ .|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k-~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCK-RCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCC-eeeEecceeee
Confidence 35689999986532 236678999999999999998744 49999998774
No 111
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.42 E-value=0.073 Score=52.01 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=40.6
Q ss_pred CCCCccceecCcccCCCeeEE-ecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 202 CTSRTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
.....|+|+..+|......+. .||||+|...+|++-- ....||+|-.++...+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCC
Confidence 456899999999966554444 4899999999999873 2345999988877553
No 112
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.034 Score=54.57 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=37.3
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
...|-||.+.|..+ ++..|+|.||..|--+-++... .|.+|.+..
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGE-KCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCC-cceeccccc
Confidence 46799999999887 6667999999999988887744 599997644
No 113
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.90 E-value=0.037 Score=39.07 Aligned_cols=42 Identities=24% Similarity=0.634 Sum_probs=24.2
Q ss_pred cceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCC-CCccc
Q 014723 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT-FCPVC 248 (419)
Q Consensus 207 C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~-~CP~C 248 (419)
|.+|.+-...|+.-..-.|.-.+|..|++.++...+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6788888877744433358889999999999987543 59987
No 114
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.0079 Score=60.79 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=43.3
Q ss_pred CccceecCcccCC-CeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 205 RTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 205 ~~C~ICle~~~~~-~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
..|+||.+.++.. +++..+-|+|.+|.+||.+||.. +..||.|++++...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhh
Confidence 6799999999776 77888889999999999999988 45599999987654
No 115
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.61 E-value=0.12 Score=52.77 Aligned_cols=30 Identities=27% Similarity=0.757 Sum_probs=22.8
Q ss_pred CCChhhHHhHHHHHhcC------------CCCCccccccccc
Q 014723 225 CRHKFHAFCVDSWLTSW------------RTFCPVCKRDART 254 (419)
Q Consensus 225 C~H~Fh~~Ci~~Wl~~~------------~~~CP~Cr~~~~~ 254 (419)
|.-.+|.+|+.+|+-.+ +..||+||+++.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 55678999999999432 3359999998653
No 116
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.67 E-value=0.085 Score=58.19 Aligned_cols=47 Identities=23% Similarity=0.595 Sum_probs=37.6
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCC-CCcccccccccC
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT-FCPVCKRDARTS 255 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~-~CP~Cr~~~~~~ 255 (419)
..|.||++ .+.....+|+|.||.+|+.+-++.... .||+||..+.+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 455677789999999999998765333 499999877654
No 117
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=0.12 Score=57.09 Aligned_cols=42 Identities=21% Similarity=0.657 Sum_probs=33.4
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
..|..|--.+..+ .+..-|+|.||..|+. .+...||.|+.++
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE----DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc----cCcccCCccchhh
Confidence 5899998887766 5666699999999998 3345699998744
No 118
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.02 E-value=0.11 Score=51.12 Aligned_cols=46 Identities=28% Similarity=0.693 Sum_probs=38.5
Q ss_pred CCccceecCcccCC-CeeEEecCCChhhHHhHHHHHhcCCCCCccccc
Q 014723 204 SRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 250 (419)
Q Consensus 204 ~~~C~ICle~~~~~-~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~ 250 (419)
...|+||.|.+... +.+..++|+|.-|..|+.+....+ -.||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 34599999988666 356778999999999999988886 77999988
No 119
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.50 E-value=0.19 Score=55.97 Aligned_cols=35 Identities=23% Similarity=0.585 Sum_probs=29.1
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHH
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL 238 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl 238 (419)
.++.|.+|...+... .-.+.||+|.||+.||.+-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 468999999887553 56788999999999998765
No 120
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=0.18 Score=49.89 Aligned_cols=42 Identities=31% Similarity=0.667 Sum_probs=27.2
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
.|.-|-..+. -.-|.+||+|+||.+|-.. ...+ .||.|-..|
T Consensus 92 fCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK-~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDK-ICPLCDDRV 133 (389)
T ss_pred eecccCCcce--eeecccccchhhhhhhhhc--Cccc-cCcCcccHH
Confidence 4555544432 2357899999999999754 2223 499886544
No 121
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.55 E-value=0.24 Score=47.31 Aligned_cols=49 Identities=33% Similarity=0.714 Sum_probs=37.7
Q ss_pred CCccceecCc-ccCCC-eeEEec-CCChhhHHhHHHHHhcCCCCCc--cccccc
Q 014723 204 SRTCAICLED-YSVGE-KLRILP-CRHKFHAFCVDSWLTSWRTFCP--VCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~-~~~~~-~~~~Lp-C~H~Fh~~Ci~~Wl~~~~~~CP--~Cr~~~ 252 (419)
+..|+||..+ |-.++ ++-+-| |-|..|..|++.-+..+...|| -|.+-+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 5689999944 45554 333446 9999999999999999888999 785543
No 122
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=0.49 Score=46.49 Aligned_cols=48 Identities=31% Similarity=0.604 Sum_probs=36.4
Q ss_pred ccceec-CcccCCC-eeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 206 TCAICL-EDYSVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 206 ~C~ICl-e~~~~~~-~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
.|++|. +.|..++ ++.+=+|+|..|..|++.-+..+...||.|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 589998 4445554 33333799999999999999888888999966543
No 123
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=0.4 Score=47.87 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=34.7
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
....|++|+..-.++. ...--|-+||..||-+.+..++ .||+=..+.
T Consensus 299 ~~~~CpvClk~r~Npt--vl~vSGyVfCY~Ci~~Yv~~~~-~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPT--VLEVSGYVFCYPCIFSYVVNYG-HCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCc--eEEecceEEeHHHHHHHHHhcC-CCCccCCcc
Confidence 3578999999876652 2222589999999999999755 599865443
No 124
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.30 E-value=0.54 Score=46.45 Aligned_cols=53 Identities=26% Similarity=0.573 Sum_probs=38.4
Q ss_pred CCccceecCcccCCCe-eEEecCC-----ChhhHHhHHHHHhc-CCCCCcccccccccCC
Q 014723 204 SRTCAICLEDYSVGEK-LRILPCR-----HKFHAFCVDSWLTS-WRTFCPVCKRDARTST 256 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~-~~~LpC~-----H~Fh~~Ci~~Wl~~-~~~~CP~Cr~~~~~~~ 256 (419)
+..|-||.++...... ....||. +..|..|++.|+.. ....|-+|+.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~ 137 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVG 137 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecc
Confidence 4789999987654321 4567774 46899999999974 3456999988665543
No 125
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=0.66 Score=47.47 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=39.4
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCC--CCCcccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR--TFCPVCK 249 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~--~~CP~Cr 249 (419)
-..|+|=.|.=.+...-..|.|||+..++-|.+-.+.+. ..||.|=
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 478999888877777888999999999999999887766 6799993
No 126
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.21 E-value=0.47 Score=47.38 Aligned_cols=43 Identities=23% Similarity=0.552 Sum_probs=33.6
Q ss_pred CCccceecCcccCCCeeEEecC--CChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPC--RHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC--~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
-.+|+||.+.+..+ +..| ||.-|..|-.+- ...||.||.++..
T Consensus 48 lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPP----IFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN 92 (299)
T ss_pred hccCchhhccCccc----ceecCCCcEehhhhhhhh----cccCCcccccccc
Confidence 47899999999887 5567 699999997532 4469999988763
No 127
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=84.65 E-value=0.55 Score=51.73 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=37.3
Q ss_pred CCCCccceecCcccCC-CeeEEec---CCChhhHHhHHHHHhc-----CCCCCcccccccc
Q 014723 202 CTSRTCAICLEDYSVG-EKLRILP---CRHKFHAFCVDSWLTS-----WRTFCPVCKRDAR 253 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~-~~~~~Lp---C~H~Fh~~Ci~~Wl~~-----~~~~CP~Cr~~~~ 253 (419)
...+.|.+|.-++..+ +..-.+| |+|.||..||..|+.. ....|+.|..-|.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3457788888777663 2344455 9999999999999954 3445888877554
No 128
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.24 E-value=0.67 Score=45.57 Aligned_cols=30 Identities=20% Similarity=0.578 Sum_probs=23.3
Q ss_pred CCChhhHHhHHHHHhc------------CCCCCccccccccc
Q 014723 225 CRHKFHAFCVDSWLTS------------WRTFCPVCKRDART 254 (419)
Q Consensus 225 C~H~Fh~~Ci~~Wl~~------------~~~~CP~Cr~~~~~ 254 (419)
|...+|.+|+-+|+.. ++.+||+||+++.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 5678999999999932 34579999998753
No 129
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.18 E-value=0.63 Score=44.99 Aligned_cols=55 Identities=24% Similarity=0.564 Sum_probs=36.7
Q ss_pred CCCCCccceecCcccCCCee-EEecCC-----ChhhHHhHHHHHhcC-------CCCCcccccccccC
Q 014723 201 NCTSRTCAICLEDYSVGEKL-RILPCR-----HKFHAFCVDSWLTSW-------RTFCPVCKRDARTS 255 (419)
Q Consensus 201 ~~~~~~C~ICle~~~~~~~~-~~LpC~-----H~Fh~~Ci~~Wl~~~-------~~~CP~Cr~~~~~~ 255 (419)
.+.+..|=||+..=++.... =+-||. |-.|..|+..|+..+ ...||-|+.++...
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 34568899999764443111 123663 679999999999542 22599999876543
No 130
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=83.45 E-value=1.2 Score=32.97 Aligned_cols=32 Identities=22% Similarity=0.737 Sum_probs=27.3
Q ss_pred CCccceecCcccCCCeeEEec-CCChhhHHhHH
Q 014723 204 SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVD 235 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~Ci~ 235 (419)
...|.+|-+.|++++.+++-| |+-.+|+.|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 468999999999887777777 99999999953
No 131
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.33 E-value=0.39 Score=55.54 Aligned_cols=47 Identities=30% Similarity=0.628 Sum_probs=36.8
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
+...|.||++.+.... .+..|+|.+|..|+..|+.. +..||.|+...
T Consensus 1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYA-SSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHH-hccCcchhhhh
Confidence 4568999999987331 34459999999999999998 44599998533
No 132
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.90 E-value=0.47 Score=44.91 Aligned_cols=39 Identities=36% Similarity=0.922 Sum_probs=28.8
Q ss_pred cceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCcccccccc
Q 014723 207 CAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 207 C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
|-.|.+. +-.+..|||.|. +|..|-.. + ..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-~----~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES-L----RICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc-C----ccCCCCcChhh
Confidence 8888775 345788999986 99999654 2 24999987553
No 133
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.56 E-value=0.45 Score=51.31 Aligned_cols=43 Identities=35% Similarity=0.695 Sum_probs=29.8
Q ss_pred CccceecCcccCCC-eeEEecCCChhhHHhHHHHHhcCCCCCcccccc
Q 014723 205 RTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 251 (419)
Q Consensus 205 ~~C~ICle~~~~~~-~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~ 251 (419)
..|.||+..|.... .-+-|-|+|..|..|++.-... +|| |+++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCcc
Confidence 46889987765442 2344569999999999876554 588 6553
No 134
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.69 E-value=1.2 Score=49.37 Aligned_cols=49 Identities=24% Similarity=0.635 Sum_probs=34.4
Q ss_pred CCCccceecCcccCCCeeEEecCCC-----hhhHHhHHHHHhc-CCCCCccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRH-----KFHAFCVDSWLTS-WRTFCPVCKRDA 252 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H-----~Fh~~Ci~~Wl~~-~~~~CP~Cr~~~ 252 (419)
++..|-||..+=..++++- =||++ ..|.+|+.+|+.- ....|-+|+.++
T Consensus 11 d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred cchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 3588999996644443332 35653 4899999999974 344699998765
No 135
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.99 E-value=0.79 Score=47.39 Aligned_cols=37 Identities=30% Similarity=0.727 Sum_probs=28.0
Q ss_pred CCccceec-CcccCCCeeEEecCCChhhHHhHHHHHhc
Q 014723 204 SRTCAICL-EDYSVGEKLRILPCRHKFHAFCVDSWLTS 240 (419)
Q Consensus 204 ~~~C~ICl-e~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~ 240 (419)
..+|.||. ++....+....+-|+|.||.+|+++-++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 57899999 54444344445669999999999998864
No 136
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.29 E-value=1.2 Score=49.13 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=20.2
Q ss_pred EecCCChhhHHhHHHHHhcCCCCCc
Q 014723 222 ILPCRHKFHAFCVDSWLTSWRTFCP 246 (419)
Q Consensus 222 ~LpC~H~Fh~~Ci~~Wl~~~~~~CP 246 (419)
...|+|+.|..|..+|+..+. .||
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd-~Cp 1068 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGD-VCP 1068 (1081)
T ss_pred hccccccccHHHHHHHHhcCC-cCC
Confidence 345999999999999999854 588
No 137
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=78.94 E-value=3.2 Score=46.13 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=34.0
Q ss_pred CCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecC
Q 014723 74 NMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE 110 (419)
Q Consensus 74 ~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~ 110 (419)
+++|+|+|++-|.-.+.+|++||+.+||.|||+|.+.
T Consensus 182 ~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 182 NLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred cccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 4689999999999999999999999999999999764
No 138
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=78.92 E-value=2.3 Score=38.44 Aligned_cols=32 Identities=31% Similarity=0.645 Sum_probs=21.7
Q ss_pred CCccceecCcccCCCeeEEecC------------CC-hhhHHhHHHHH
Q 014723 204 SRTCAICLEDYSVGEKLRILPC------------RH-KFHAFCVDSWL 238 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC------------~H-~Fh~~Ci~~Wl 238 (419)
+..|+||||--.+. +.|-| +- .-|..|+++.-
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 57899999975443 44445 22 35788999876
No 139
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.63 E-value=1.2 Score=48.19 Aligned_cols=47 Identities=34% Similarity=0.916 Sum_probs=37.4
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
...+.|.||++++ ..+..+|. |..|+.+|+.. +..||+|+..+....
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~-~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYV-QEVCPLCHTYMKEDD 523 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhh-ccccCCCchhhhccc
Confidence 3468899999998 34667788 99999999988 556999988765543
No 140
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=75.13 E-value=2.3 Score=37.36 Aligned_cols=52 Identities=25% Similarity=0.527 Sum_probs=34.9
Q ss_pred CCCccceecCcccCCCeeEEec-CCChhhHHhHHH-HHhc-CCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDS-WLTS-WRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~Ci~~-Wl~~-~~~~CP~Cr~~~~~ 254 (419)
.-.+|.||.|.-.+..-++-=. ||-..|..|--. |-.- ..+.||+|+..+-.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3589999998866553222111 898999888654 6532 35579999887643
No 141
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=72.05 E-value=2.9 Score=43.36 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=28.9
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 240 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~ 240 (419)
+..|+||..-|+++ ++|||+|..|..|...-+.+
T Consensus 4 elkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 4 ELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 57899999999887 89999999999998765543
No 142
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=72.03 E-value=1.7 Score=47.00 Aligned_cols=42 Identities=24% Similarity=0.631 Sum_probs=27.6
Q ss_pred CCccceecC-----cccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccc
Q 014723 204 SRTCAICLE-----DYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249 (419)
Q Consensus 204 ~~~C~ICle-----~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr 249 (419)
...|.+|.. .|+.....+...|+++||.+|+.. ....||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCchH
Confidence 467888852 233223445566999999999654 344599993
No 143
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=70.80 E-value=3.5 Score=29.93 Aligned_cols=44 Identities=23% Similarity=0.505 Sum_probs=21.2
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhc----CCCCCcccccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRD 251 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~----~~~~CP~Cr~~ 251 (419)
..|+|....+..+ +|...|.|.-|.+ ++.||+. ..-.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 3688888887665 7878899984422 3456533 33369999763
No 144
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=69.47 E-value=1.5 Score=48.23 Aligned_cols=47 Identities=34% Similarity=0.738 Sum_probs=36.2
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC--CCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~--~~~CP~Cr~~~~ 253 (419)
..+|.||++.+..+ ..+.|.|.|+..|+-.-|... ...||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 46899999998877 566799999999987765442 345999985443
No 145
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=68.95 E-value=1.7 Score=31.30 Aligned_cols=31 Identities=26% Similarity=0.626 Sum_probs=20.5
Q ss_pred cCC-ChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 224 PCR-HKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 224 pC~-H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
.|. |..|..|+...|.. ...||+|+++++..
T Consensus 17 ~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSR-SDRCPICGKPLPTK 48 (50)
T ss_dssp E-SS-EEEHHHHHHT-SS-SSEETTTTEE----
T ss_pred eecchhHHHHHHHHHhcc-ccCCCcccCcCccc
Confidence 485 99999999998887 55699999987643
No 146
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=66.89 E-value=7.4 Score=30.99 Aligned_cols=58 Identities=24% Similarity=0.513 Sum_probs=23.8
Q ss_pred CCCccceecCcccC---CCeeE-EecCCChhhHHhHHHHHhcCCCCCcccccccccCCCCCC
Q 014723 203 TSRTCAICLEDYSV---GEKLR-ILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 260 (419)
Q Consensus 203 ~~~~C~ICle~~~~---~~~~~-~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~p~ 260 (419)
....|.||-|++.. ++..+ .-.|+--.|+.|.+-=.+..+..||-|+..+...++.|.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~ 69 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPR 69 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCC
Confidence 35789999998743 33221 223777789999987777767779999988877766554
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.53 E-value=3.9 Score=45.20 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=28.3
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPV 247 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~ 247 (419)
..|.+|-..+..-. +-.--|+|.-|..|+++|+..... ||.
T Consensus 780 ~~CtVC~~vi~G~~-~~c~~C~H~gH~sh~~sw~~~~s~-ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVD-VWCQVCGHGGHDSHLKSWFFKASP-CAK 820 (839)
T ss_pred cCceeecceeeeeE-eecccccccccHHHHHHHHhcCCC-Ccc
Confidence 46888876653221 111129999999999999988554 765
No 148
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=64.80 E-value=1.9e+02 Score=34.44 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=8.6
Q ss_pred CCccceecCcccCC
Q 014723 204 SRTCAICLEDYSVG 217 (419)
Q Consensus 204 ~~~C~ICle~~~~~ 217 (419)
.+.|.-|.|.+-.+
T Consensus 1391 kd~~rgvsEnImlg 1404 (1605)
T KOG0260|consen 1391 KDPCRGVSENIMLG 1404 (1605)
T ss_pred cCCCccceeeeeec
Confidence 35566677766555
No 150
>PLN02189 cellulose synthase
Probab=62.34 E-value=9.6 Score=43.98 Aligned_cols=57 Identities=21% Similarity=0.445 Sum_probs=40.3
Q ss_pred CCccceecCccc---CCCeeEEec-CCChhhHHhHHHHHhcCCCCCcccccccccCCCCCC
Q 014723 204 SRTCAICLEDYS---VGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 260 (419)
Q Consensus 204 ~~~C~ICle~~~---~~~~~~~Lp-C~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~p~ 260 (419)
...|.||-|++. +|+.-+.-. |+--.|+.|.+-=-+..+..||-||..+...++.|.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~ 94 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPR 94 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCC
Confidence 568999999974 444433333 777799999965555666779999998875554443
No 151
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.05 E-value=4.4 Score=39.94 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=27.4
Q ss_pred CccceecCcccCCCeeEEecC----CChhhHHhHHHHHhc
Q 014723 205 RTCAICLEDYSVGEKLRILPC----RHKFHAFCVDSWLTS 240 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC----~H~Fh~~Ci~~Wl~~ 240 (419)
..|.+|.|.+++..-+ .| .|+||..|-.+-++.
T Consensus 269 LcCTLC~ERLEDTHFV---QCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFV---QCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhccCcee---ecCCCcccceecccCHHHHHh
Confidence 6899999999887433 35 699999999998876
No 152
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=59.04 E-value=4.9 Score=38.00 Aligned_cols=43 Identities=28% Similarity=0.750 Sum_probs=34.1
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr 249 (419)
-..|.+|.+-.-.+ ++.=.|+-.+|..|+.+.++. ...||.|.
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~-~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQR-RDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcc-cCcCCchh
Confidence 36899999876555 344457888999999999998 66799993
No 153
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=6.3 Score=41.54 Aligned_cols=36 Identities=31% Similarity=0.659 Sum_probs=30.4
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 240 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~ 240 (419)
...+|.||.+.+.. ....+.|+|.||..|....++.
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 45789999999865 5677889999999999988855
No 154
>PLN02436 cellulose synthase A
Probab=57.73 E-value=13 Score=43.13 Aligned_cols=56 Identities=25% Similarity=0.492 Sum_probs=39.6
Q ss_pred CCccceecCcc---cCCCeeEEe-cCCChhhHHhHHHHHhcCCCCCcccccccccCCCCC
Q 014723 204 SRTCAICLEDY---SVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 259 (419)
Q Consensus 204 ~~~C~ICle~~---~~~~~~~~L-pC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~p 259 (419)
...|.||-|++ .+||.-+.- .|+--.|+.|.+-=.+..+..||-||..+...++.|
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~ 95 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSP 95 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCC
Confidence 46899999997 344533322 277779999996655666777999998887555443
No 155
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=55.73 E-value=11 Score=37.99 Aligned_cols=61 Identities=25% Similarity=0.437 Sum_probs=40.2
Q ss_pred CCcceecccccc-CCCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccc
Q 014723 189 MPSLIFTAVVED-NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 250 (419)
Q Consensus 189 lp~~~~~~~~~~-~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~ 250 (419)
+|...|...... ..+...|-.|.++.......+--.|.+.||.+|=.--=+.-+. ||-|..
T Consensus 314 ~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~-CpgCeh 375 (378)
T KOG2807|consen 314 FPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHN-CPGCEH 375 (378)
T ss_pred cCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhc-CCCcCC
Confidence 455555544332 2345669999888877776776679999999994332233344 999964
No 156
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=55.46 E-value=6.6 Score=38.43 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=33.6
Q ss_pred CccceecCcccCCCeeEEe----cCCChhhHHhHHHHHh-cC-------CCCCccccccc
Q 014723 205 RTCAICLEDYSVGEKLRIL----PCRHKFHAFCVDSWLT-SW-------RTFCPVCKRDA 252 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~L----pC~H~Fh~~Ci~~Wl~-~~-------~~~CP~Cr~~~ 252 (419)
.+|.+|.+++...+..+.. .|.-.+|..|+..-+. .. ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 6899999999554444433 1788999999998442 21 12599998744
No 157
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=55.20 E-value=15 Score=27.46 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHHhccceEEEEEEeCC
Q 014723 1 MNLSVVYLLCVLLICRLASANVVLIGNN 28 (419)
Q Consensus 1 m~~~~ll~~~ll~~~~~~~a~vvv~~~~ 28 (419)
|+.+++++++++++...+.||.+|.++.
T Consensus 1 kk~i~~~~~~~~~~~~~a~AQWvV~DP~ 28 (55)
T PF13605_consen 1 KKKILMLCVACLLLAGPARAQWVVTDPG 28 (55)
T ss_pred CcchHHHHHHHHhcCCcceeEEEEeCch
Confidence 4556666777777888899999998764
No 158
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.51 E-value=5.7 Score=44.21 Aligned_cols=43 Identities=19% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCccceecCcccCC----CeeEEecCCChhhHHhHHHHHhcCCCCCccc
Q 014723 204 SRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 248 (419)
Q Consensus 204 ~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~C 248 (419)
+..|.-|.+..-.. +.+.++.|+|.||+.|+..-..+.+ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChh
Confidence 35799999876422 5678899999999999987665533 6555
No 159
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=51.77 E-value=7 Score=36.73 Aligned_cols=42 Identities=31% Similarity=0.798 Sum_probs=27.7
Q ss_pred CCCccceecCc-----ccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccc
Q 014723 203 TSRTCAICLED-----YSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 250 (419)
Q Consensus 203 ~~~~C~ICle~-----~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~ 250 (419)
.+..|.||-++ |......+--.|+-+||+.|..+ ..||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcHh
Confidence 35789999842 33323333344999999999762 34999954
No 160
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=50.85 E-value=3.7e+02 Score=32.14 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=11.4
Q ss_pred CCHHHHHHHHH-HcCCceEEEeecC
Q 014723 87 CSFEDKVRNAQ-KAGFEAAIVYDNE 110 (419)
Q Consensus 87 CsF~~Kv~nAq-~aGA~avIv~nn~ 110 (419)
-+..+|+...+ ..|-....|++++
T Consensus 1194 ltm~~ia~~i~~~f~~d~~~i~~dd 1218 (1605)
T KOG0260|consen 1194 LTMEQIAEKINRGFGSDLACIFSDD 1218 (1605)
T ss_pred ccHHHHHHHHHhhccCCCceeeccc
Confidence 35555555544 3344444455543
No 161
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.42 E-value=10 Score=36.73 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHh
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT 239 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~ 239 (419)
-+.|..||..+.++ ++.|=||+|+++||.+.+.
T Consensus 43 FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 37899999999888 6667799999999999874
No 162
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.59 E-value=21 Score=30.55 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=31.5
Q ss_pred CCccceecCcccCCC-----------eeEEecCCChhhHHhHHHHHhcCCCCCcccc
Q 014723 204 SRTCAICLEDYSVGE-----------KLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 249 (419)
Q Consensus 204 ~~~C~ICle~~~~~~-----------~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr 249 (419)
...|--|+..|..+. ..+--.|++.||.+|=.-|-+.-+. ||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~-CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHC-CPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccC-CcCCC
Confidence 456999998886431 1223348999999997666666555 99995
No 163
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=46.13 E-value=12 Score=28.84 Aligned_cols=13 Identities=23% Similarity=0.744 Sum_probs=9.2
Q ss_pred hhhHHhHHHHHhc
Q 014723 228 KFHAFCVDSWLTS 240 (419)
Q Consensus 228 ~Fh~~Ci~~Wl~~ 240 (419)
-||+.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999953
No 164
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=45.63 E-value=15 Score=23.83 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=24.6
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
.|..|.+.+...+..... =+..||..|. .|..|+..+
T Consensus 1 ~C~~C~~~i~~~~~~~~~-~~~~~H~~Cf---------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA-LGKVWHPECF---------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEe-CCccccccCC---------CCcccCCcC
Confidence 377888887665333222 3678998884 588887765
No 165
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.96 E-value=13 Score=36.22 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=36.5
Q ss_pred CCccceecCcccCCCee-EEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 204 SRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~-~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
...|+|---+|...... ...+|||+|-..-+++-- ...|++|...+.+.+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccC
Confidence 46799988888665443 445799999988877643 346999988776553
No 166
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=44.54 E-value=30 Score=40.30 Aligned_cols=56 Identities=23% Similarity=0.479 Sum_probs=37.9
Q ss_pred CCccceecCccc---CCCee-EEecCCChhhHHhHHHHHhcCCCCCcccccccccCCCCC
Q 014723 204 SRTCAICLEDYS---VGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 259 (419)
Q Consensus 204 ~~~C~ICle~~~---~~~~~-~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~p 259 (419)
...|.||-|++. +||.- ..=.|+--.|+.|.+-=-+..+..||-|+..+-..++.|
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsp 76 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSP 76 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCC
Confidence 468999999974 34432 222377779999985544555667999998776554433
No 167
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=44.38 E-value=25 Score=26.30 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=30.9
Q ss_pred CccceecCcccCCCeeEEecCC--ChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCR--HKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~--H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
..|-.|-.++.....-..+ |. ..||.+|.+.-|.. .||.|.-.+..
T Consensus 6 pnCE~C~~dLp~~s~~A~I-CSfECTFC~~C~e~~l~~---~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI-CSFECTFCADCAETMLNG---VCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceE-EeEeCcccHHHHHHHhcC---cCcCCCCcccc
Confidence 4577787777555322222 54 46999999998744 59999766543
No 168
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=43.57 E-value=14 Score=21.25 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=5.6
Q ss_pred ChhHHHHHHHHH
Q 014723 1 MNLSVVYLLCVL 12 (419)
Q Consensus 1 m~~~~ll~~~ll 12 (419)
|+.+++|+++|+
T Consensus 2 Mk~vIIlvvLLl 13 (19)
T PF13956_consen 2 MKLVIILVVLLL 13 (19)
T ss_pred ceehHHHHHHHh
Confidence 445555444443
No 169
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=43.30 E-value=26 Score=35.17 Aligned_cols=51 Identities=24% Similarity=0.543 Sum_probs=33.7
Q ss_pred CCCccceecCcc---------cCC-------CeeEEecCCChhhHHhHHHHHhc--------CCCCCcccccccc
Q 014723 203 TSRTCAICLEDY---------SVG-------EKLRILPCRHKFHAFCVDSWLTS--------WRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~---------~~~-------~~~~~LpC~H~Fh~~Ci~~Wl~~--------~~~~CP~Cr~~~~ 253 (419)
.+.+|++|+..= +.+ -...--||+|+--.+-.+-|-+. .+..||.|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 357999999541 111 11224589999888888889843 2346999977654
No 170
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=42.28 E-value=32 Score=39.90 Aligned_cols=57 Identities=19% Similarity=0.464 Sum_probs=39.6
Q ss_pred CCCccceecCccc---CCCeeE-EecCCChhhHHhHHHHHhcCCCCCcccccccccCCCCC
Q 014723 203 TSRTCAICLEDYS---VGEKLR-ILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 259 (419)
Q Consensus 203 ~~~~C~ICle~~~---~~~~~~-~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~p 259 (419)
+...|.||-|+.. +||.-+ .=.|+--.|+.|.+-=.+..+..||-|+..+...++.|
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~ 74 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCP 74 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCC
Confidence 4678999999974 334322 22377779999996555666677999998887554433
No 171
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=42.10 E-value=20 Score=35.91 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC--CCCCccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW--RTFCPVC 248 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~--~~~CP~C 248 (419)
-..|++--|.-++...-..|.|||+.-++-++.--+.+ ...||.|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 46899877777776777889999999999988876543 3459999
No 172
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=40.80 E-value=19 Score=39.74 Aligned_cols=71 Identities=23% Similarity=0.445 Sum_probs=43.0
Q ss_pred cccCchhhHHhcCCcceeccccccCCCCCccceecCcccCCC-------eeEEecCCChhhHHhHHHHH---------hc
Q 014723 177 EFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGE-------KLRILPCRHKFHAFCVDSWL---------TS 240 (419)
Q Consensus 177 ~~~g~~~~~i~~lp~~~~~~~~~~~~~~~~C~ICle~~~~~~-------~~~~LpC~H~Fh~~Ci~~Wl---------~~ 240 (419)
+..-|..-+++.+|.-+|. .+|-||.|+=...+ .+-+--|.-.||..|-..-= .+
T Consensus 99 NV~TMEPIiLq~VP~dRfn---------KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~d 169 (900)
T KOG0956|consen 99 NVHTMEPIILQDVPHDRFN---------KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISD 169 (900)
T ss_pred ccccccceeeccCchhhhc---------ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccc
Confidence 3445666666666665554 58999998733221 11122377789999986631 11
Q ss_pred CCCCCcccccccccCC
Q 014723 241 WRTFCPVCKRDARTST 256 (419)
Q Consensus 241 ~~~~CP~Cr~~~~~~~ 256 (419)
+...|-.|+.-+.+.+
T Consensus 170 NVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 170 NVKYCGYCKYHFSKLK 185 (900)
T ss_pred cceechhHHHHHHHhh
Confidence 2335999987665543
No 173
>PLN02400 cellulose synthase
Probab=40.75 E-value=29 Score=40.42 Aligned_cols=57 Identities=25% Similarity=0.511 Sum_probs=38.3
Q ss_pred CCccceecCccc---CCCee-EEecCCChhhHHhHHHHHhcCCCCCcccccccccCCCCCC
Q 014723 204 SRTCAICLEDYS---VGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 260 (419)
Q Consensus 204 ~~~C~ICle~~~---~~~~~-~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~p~ 260 (419)
...|.||-|++. +||.- ..-.|+--.|+.|.+-=-+..+..||-||..+-..++.|.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~Kgspr 96 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPR 96 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCC
Confidence 468999999974 34422 2223777799999854334455669999988875554443
No 174
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=38.92 E-value=14 Score=26.67 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=22.5
Q ss_pred cceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 207 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 207 C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
|.-|.+.+...+.+.. .-+..||..|+ .|-.|++.+..
T Consensus 1 C~~C~~~I~~~~~~~~-~~~~~~H~~Cf---------~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-AMGKFWHPECF---------KCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEEEE-ETTEEEETTTS---------BETTTTCBTTT
T ss_pred CCCCCCCccCcEEEEE-eCCcEEEcccc---------ccCCCCCccCC
Confidence 5566666665443322 25667777763 47777766643
No 175
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=38.84 E-value=5.7 Score=39.50 Aligned_cols=38 Identities=32% Similarity=0.618 Sum_probs=31.1
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCC
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR 242 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~ 242 (419)
..|.+|+++|..+.......|..+||..|+..|+....
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 48999999998766666666777999999999997743
No 176
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.80 E-value=23 Score=27.84 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=29.9
Q ss_pred ccceecCcccCCCeeEEecC--CChhhHHhHHHHHhcCCCCCcccccccccCCC
Q 014723 206 TCAICLEDYSVGEKLRILPC--RHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 257 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC--~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~ 257 (419)
.|--|-.++-....-..+ | .|.||.+|.+.-|.. .||.|.-.+...+.
T Consensus 7 nCECCDrDLpp~s~dA~I-CtfEcTFCadCae~~l~g---~CPnCGGelv~RP~ 56 (84)
T COG3813 7 NCECCDRDLPPDSTDARI-CTFECTFCADCAENRLHG---LCPNCGGELVARPI 56 (84)
T ss_pred CCcccCCCCCCCCCceeE-EEEeeehhHhHHHHhhcC---cCCCCCchhhcCcC
Confidence 355566665433211122 5 478999999987754 69999776654433
No 177
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=36.26 E-value=20 Score=26.11 Aligned_cols=37 Identities=35% Similarity=0.731 Sum_probs=20.9
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHh-cCCCCCccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT-SWRTFCPVCKR 250 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~-~~~~~CP~Cr~ 250 (419)
...|+.|-+.|... .| +.| |.+.-.. .....||+|..
T Consensus 2 ~f~CP~C~~~~~~~----~L-~~H-----~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL-VEH-----CEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHH----HH-HHH-----HHhHCcCCCCCccCCCchh
Confidence 46899999865543 22 333 3333222 23456999975
No 178
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=34.22 E-value=34 Score=34.59 Aligned_cols=46 Identities=28% Similarity=0.770 Sum_probs=30.9
Q ss_pred CCccceecCcccCCCeeEEec--CCChhhHHhHHHHHhcCCCCCcccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRD 251 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~Lp--C~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~ 251 (419)
...|+||.++....+ .-.|| |++..|..|...-... ..+||.||++
T Consensus 249 ~~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~-~~~~~~~rk~ 296 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDG-DGRCPGCRKP 296 (327)
T ss_pred CCCCCCCCCcccccc-cccccccccccchhhhhhccccc-CCCCCccCCc
Confidence 378999999873332 23444 6777777776665544 5679999943
No 179
>PLN02248 cellulose synthase-like protein
Probab=33.75 E-value=75 Score=37.30 Aligned_cols=51 Identities=25% Similarity=0.515 Sum_probs=33.1
Q ss_pred CCccce--ecCc-ccCCCeeEEec--CCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAI--CLED-YSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~I--Cle~-~~~~~~~~~Lp--C~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+..|.+ |-.. +.+......+| |++..|++|...-++. ...||-||+++...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 179 (1135)
T PLN02248 124 GSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKS-GGICPGCKEPYKVT 179 (1135)
T ss_pred CCcccccCcccccccccccccCCcccccchhHHhHhhhhhhc-CCCCCCCccccccc
Confidence 456665 4322 22222233556 6788999999988888 44599999988443
No 180
>PF15240 Pro-rich: Proline-rich
Probab=32.86 E-value=26 Score=32.35 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHh
Q 014723 3 LSVVYLLCVLLIC 15 (419)
Q Consensus 3 ~~~ll~~~ll~~~ 15 (419)
+||||.++||.+.
T Consensus 2 LlVLLSvALLALS 14 (179)
T PF15240_consen 2 LLVLLSVALLALS 14 (179)
T ss_pred hhHHHHHHHHHhh
Confidence 4455555555443
No 181
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=32.51 E-value=70 Score=25.26 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=23.7
Q ss_pred cceEE---EEecCCCCHHHHHHHHHHcCCceEEEee
Q 014723 76 SSAFV---LTIRGGCSFEDKVRNAQKAGFEAAIVYD 108 (419)
Q Consensus 76 ~~~Ia---LV~RG~CsF~~Kv~nAq~aGA~avIv~n 108 (419)
.+|++ +|.+. .+.+.+..++++||.++++++
T Consensus 38 ~~w~AV~~vV~~~--~~~~~~~~Lk~~GA~~Ilv~p 71 (75)
T PF08029_consen 38 EDWVAVHAVVPEK--QVWDLMDKLKAAGASDILVLP 71 (75)
T ss_dssp TTEEEEEEEEECC--CHHHHHHHHHCTT-EEEEEEE
T ss_pred CCEEEEEEEecHH--HHHHHHHHHHHcCCCEEEEEe
Confidence 35653 45555 789999999999999999985
No 182
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.26 E-value=21 Score=36.94 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=28.6
Q ss_pred CCccceecCcccCCC--eeEEecCCChhhHHhHHHHHhcCCCCCccc
Q 014723 204 SRTCAICLEDYSVGE--KLRILPCRHKFHAFCVDSWLTSWRTFCPVC 248 (419)
Q Consensus 204 ~~~C~ICle~~~~~~--~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~C 248 (419)
-..|+.|.--++..+ ...+-.|+|.||..|...|...... |..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~-~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGE-CYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCcc-ccCc
Confidence 467888875543332 2222238999999999999876443 6444
No 183
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=30.70 E-value=23 Score=38.38 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=24.9
Q ss_pred CCCCccceecCcccCC----------CeeEEecCCChhhHHhHHHHH
Q 014723 202 CTSRTCAICLEDYSVG----------EKLRILPCRHKFHAFCVDSWL 238 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~----------~~~~~LpC~H~Fh~~Ci~~Wl 238 (419)
.....|+||.|+|+.- ...+.+.=|-+||..|+..--
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 3457899999999543 122333247789999987643
No 184
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=30.65 E-value=29 Score=25.48 Aligned_cols=42 Identities=24% Similarity=0.577 Sum_probs=19.2
Q ss_pred cceecCcccCCC------eeEEe-cCCChhhHHhHHHHHhcCCCCCcccc
Q 014723 207 CAICLEDYSVGE------KLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCK 249 (419)
Q Consensus 207 C~ICle~~~~~~------~~~~L-pC~H~Fh~~Ci~~Wl~~~~~~CP~Cr 249 (419)
|--|+..|..+. ..-.= .|++.|+.+| +-.+...--.||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 455666665541 12222 3899999999 444433222399883
No 185
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=29.37 E-value=68 Score=24.08 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=31.9
Q ss_pred eEEEEecCCCCHHHHHHHHHH-cCCceEEEeecCCCcceeeccCCCCceEEeEEEeec
Q 014723 78 AFVLTIRGGCSFEDKVRNAQK-AGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSK 134 (419)
Q Consensus 78 ~IaLV~RG~CsF~~Kv~nAq~-aGA~avIv~nn~~~~~~~~m~g~~~~i~IPsv~Is~ 134 (419)
+|.|..+-+|.|=.|++.+-+ .|.... ..|-+.+.....+........+|.+++..
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~-~~~v~~~~~~~~~~~~~g~~~vP~ifi~g 58 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYE-EIPLGKDITGRSLRAVTGAMTVPQVFIDG 58 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcE-EEECCCChhHHHHHHHhCCCCcCeEEECC
Confidence 578888999999999998864 454443 33322221111111011224678888764
No 186
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=28.95 E-value=15 Score=25.96 Aligned_cols=45 Identities=22% Similarity=0.569 Sum_probs=28.9
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhc-----CCCCCccccc
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKR 250 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~-----~~~~CP~Cr~ 250 (419)
.|.||.+....++.+.--.|+..||..|+..=... ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 37888885444444443458889999998765431 1335888864
No 187
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=28.71 E-value=34 Score=21.73 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=10.9
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhH
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCV 234 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci 234 (419)
.|.+|.+.........-..|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57888887665344555668889999885
No 188
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=27.94 E-value=39 Score=25.56 Aligned_cols=18 Identities=28% Similarity=0.958 Sum_probs=11.9
Q ss_pred CCCCcccccccccCCCCC
Q 014723 242 RTFCPVCKRDARTSTGEP 259 (419)
Q Consensus 242 ~~~CP~Cr~~~~~~~~~p 259 (419)
+..||+|+..+.....++
T Consensus 2 k~~CPlCkt~~n~gsk~~ 19 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSKDP 19 (61)
T ss_pred CccCCcccchhhcCCCCC
Confidence 346999998875554443
No 189
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.62 E-value=52 Score=32.92 Aligned_cols=50 Identities=24% Similarity=0.583 Sum_probs=37.9
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
..+.|-||...+..+.... -|.|.|+..|...|....+. ||.|+....+.
T Consensus 104 ~~~~~~~~~g~l~vpt~~q--g~w~qf~~~~p~~~~~~~~~-~~d~~~~~~pv 153 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQ--GCWHQFCYVCPKSNFAMGND-CPDCRGKISPV 153 (324)
T ss_pred CccceeeeeeeEEeccccc--CceeeeeecCCchhhhhhhc-cchhhcCcCce
Confidence 3578999998886653222 29999999999999998665 99998755443
No 190
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=27.44 E-value=20 Score=27.62 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHh
Q 014723 1 MNLSVVYLLCVLLIC 15 (419)
Q Consensus 1 m~~~~ll~~~ll~~~ 15 (419)
|++-++||+++||+.
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 777777777777766
No 191
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=27.27 E-value=23 Score=35.96 Aligned_cols=47 Identities=26% Similarity=0.614 Sum_probs=26.8
Q ss_pred CCCccceecCcccCCCeeEEecC---CChhhH--------HhHHHHH----hcCCCCCccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPC---RHKFHA--------FCVDSWL----TSWRTFCPVCKR 250 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC---~H~Fh~--------~Ci~~Wl----~~~~~~CP~Cr~ 250 (419)
.+..|++|-|... |-....|.| .-.|.+ .|+.+-- +..+.+||.||.
T Consensus 14 l~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 14 LGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 4678999998864 334445554 444432 3443321 123446999985
No 192
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.12 E-value=25 Score=22.00 Aligned_cols=8 Identities=25% Similarity=0.742 Sum_probs=3.8
Q ss_pred cceecCcc
Q 014723 207 CAICLEDY 214 (419)
Q Consensus 207 C~ICle~~ 214 (419)
|+-|...+
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 44454443
No 193
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.59 E-value=38 Score=27.84 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=11.5
Q ss_pred hhhHHhHHHHHhc
Q 014723 228 KFHAFCVDSWLTS 240 (419)
Q Consensus 228 ~Fh~~Ci~~Wl~~ 240 (419)
-||+.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999964
No 194
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=25.88 E-value=22 Score=25.93 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=5.4
Q ss_pred CCccccccccc
Q 014723 244 FCPVCKRDART 254 (419)
Q Consensus 244 ~CP~Cr~~~~~ 254 (419)
.||+|.+++.+
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 69999887753
No 195
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.81 E-value=13 Score=36.57 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=37.8
Q ss_pred CCccceecCcccCC---CeeEEec--------CCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 204 SRTCAICLEDYSVG---EKLRILP--------CRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~---~~~~~Lp--------C~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
...|.||...+... ..-+++. |+|..+..|++.-+......||.|+...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 36799999888732 2334556 9999999999998876556799998753
No 196
>PLN02195 cellulose synthase A
Probab=25.15 E-value=75 Score=36.77 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=36.2
Q ss_pred CCccceecCccc---CCCee-EEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYS---VGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~---~~~~~-~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|.||-|++. +||.- ..-.|+--.|+.|.+-=-+..+..||-|+..+.+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 468999999874 33432 2234888899999865455566679999988773
No 197
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=25.09 E-value=24 Score=36.52 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=0.0
Q ss_pred CcccCCCeeEEecCCChhhHHhHHHHHhcCCC-----CCcccccc
Q 014723 212 EDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT-----FCPVCKRD 251 (419)
Q Consensus 212 e~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~-----~CP~Cr~~ 251 (419)
+.....+..+-|.|||++.. ..|-..... .||+||..
T Consensus 296 ~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 296 DVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ---------------------------------------------
T ss_pred ccccccCceeeccccceeee---cccccccccccccccCCCcccc
No 198
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=24.77 E-value=99 Score=22.48 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.4
Q ss_pred EecccccccCCcCCCC
Q 014723 32 SFDDIEANFAPAIRGS 47 (419)
Q Consensus 32 ~f~~~~A~Fg~~~~~~ 47 (419)
.||.++.-|.++.+..
T Consensus 33 iFDTRPSPFNPN~Prp 48 (52)
T PF08105_consen 33 IFDTRPSPFNPNQPRP 48 (52)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 3999999999988754
No 199
>PRK10824 glutaredoxin-4; Provisional
Probab=24.69 E-value=63 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=22.3
Q ss_pred cceEEEEecC-----CCCHHHHHHHHH-HcCCce
Q 014723 76 SSAFVLTIRG-----GCSFEDKVRNAQ-KAGFEA 103 (419)
Q Consensus 76 ~~~IaLV~RG-----~CsF~~Kv~nAq-~aGA~a 103 (419)
+++|++...| .|.|-.|++..- +.|...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~ 47 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERF 47 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCc
Confidence 5789999998 899999998875 556554
No 200
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.54 E-value=71 Score=26.50 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=28.9
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHh
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT 239 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~ 239 (419)
...|.||-+.+..|++..-.+ .-..|.+|+..=..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 467999999999999887777 67799999977543
No 201
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=22.77 E-value=87 Score=24.19 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=34.2
Q ss_pred cceEEEEecCCCCHHHHHHHHH-HcCCceEEEeecCCCcceeeccCCCCceEEeEEEeech
Q 014723 76 SSAFVLTIRGGCSFEDKVRNAQ-KAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 135 (419)
Q Consensus 76 ~~~IaLV~RG~CsF~~Kv~nAq-~aGA~avIv~nn~~~~~~~~m~g~~~~i~IPsv~Is~~ 135 (419)
+.+|.|..+-+|.|=.|++.+- +.|..... .|-+.+.....+........+|.+++...
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~-idi~~~~~~~~~~~~~g~~~vP~i~i~g~ 66 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEE-IPLGNDARGRSLRAVTGATTVPQVFIGGK 66 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEE-EECCCChHHHHHHHHHCCCCcCeEEECCE
Confidence 6789999999999999999886 44555443 33221111111111111246788887543
No 202
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.61 E-value=46 Score=27.54 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=4.1
Q ss_pred HHHHHhccce
Q 014723 10 CVLLICRLAS 19 (419)
Q Consensus 10 ~ll~~~~~~~ 19 (419)
+|||+++.++
T Consensus 15 ~lLlisSeva 24 (95)
T PF07172_consen 15 ALLLISSEVA 24 (95)
T ss_pred HHHHHHhhhh
Confidence 4444443333
No 203
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.51 E-value=38 Score=34.09 Aligned_cols=45 Identities=22% Similarity=0.588 Sum_probs=28.9
Q ss_pred CCCCccceecCcccCC-----------CeeEEecCCCh--hhHHhHHHHHhc-----CCCCCcccccc
Q 014723 202 CTSRTCAICLEDYSVG-----------EKLRILPCRHK--FHAFCVDSWLTS-----WRTFCPVCKRD 251 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~-----------~~~~~LpC~H~--Fh~~Ci~~Wl~~-----~~~~CP~Cr~~ 251 (419)
..-..|++=|..+..+ +...-|.|+|+ +| .|=.+ +...||+||..
T Consensus 288 A~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 288 AARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH-----NWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred ccCCCCCcccceeecccccccccccccCCeEEEecccccccc-----ccccccccCcccCcCCeeeee
Confidence 3457898877655333 45667889987 55 46533 12359999863
No 204
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.74 E-value=1e+02 Score=25.87 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=18.7
Q ss_pred CChhhHHhHHHHHhc--------CCCCCccccc
Q 014723 226 RHKFHAFCVDSWLTS--------WRTFCPVCKR 250 (419)
Q Consensus 226 ~H~Fh~~Ci~~Wl~~--------~~~~CP~Cr~ 250 (419)
.-.||..||..++.. ..-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999998843 2235999975
No 205
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=20.42 E-value=29 Score=26.28 Aligned_cols=35 Identities=17% Similarity=0.427 Sum_probs=17.6
Q ss_pred CCccceecCcccCCCeeEEe-cCCChhhHHhHHHHH
Q 014723 204 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWL 238 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~Ci~~Wl 238 (419)
...|.+|...|..-..-..= -||++|+..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 57899999999664322222 389999999976554
No 206
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=20.37 E-value=1.5e+02 Score=23.60 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=33.0
Q ss_pred cceEEEEecC-----CCCHHHHHHHHH-HcCCceEEEeecCCCcce-eeccCCCCceEEeEEEeech
Q 014723 76 SSAFVLTIRG-----GCSFEDKVRNAQ-KAGFEAAIVYDNEDDGVL-VAMAGNSAGIKIHAVFVSKA 135 (419)
Q Consensus 76 ~~~IaLV~RG-----~CsF~~Kv~nAq-~aGA~avIv~nn~~~~~~-~~m~g~~~~i~IPsv~Is~~ 135 (419)
..+|++...| .|.|-.|++..- +.|...- .+|-..+... ..+.......++|.+||...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~-~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFG-TFDILEDEEVRQGLKEYSNWPTFPQLYVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeE-EEEcCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence 4678888776 899999988875 5565433 3342222111 11111111236788888644
Done!