Query 014723
Match_columns 419
No_of_seqs 435 out of 2803
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.8 1E-20 3.6E-25 174.2 13.4 126 28-154 49-184 (194)
2 2l0b_A E3 ubiquitin-protein li 99.6 4.5E-16 1.5E-20 126.5 6.2 79 175-254 11-89 (91)
3 1x4j_A Ring finger protein 38; 99.5 3.1E-15 1.1E-19 116.8 2.9 71 184-256 4-74 (75)
4 2ep4_A Ring finger protein 24; 99.4 7.6E-14 2.6E-18 108.3 5.6 54 202-256 13-66 (74)
5 2ect_A Ring finger protein 126 99.4 5.7E-14 2E-18 110.1 4.9 58 202-260 13-70 (78)
6 2kiz_A E3 ubiquitin-protein li 99.4 2E-13 6.7E-18 104.6 5.3 54 202-256 12-65 (69)
7 1v87_A Deltex protein 2; ring- 99.4 3.3E-13 1.1E-17 113.4 6.7 63 204-266 25-106 (114)
8 1iym_A EL5; ring-H2 finger, ub 99.4 1.2E-13 4E-18 101.0 2.6 50 203-253 4-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.3 1E-12 3.6E-17 104.3 3.1 51 204-255 15-77 (81)
10 2d8s_A Cellular modulator of i 99.3 1.8E-12 6.3E-17 102.9 4.4 57 200-257 11-73 (80)
11 2ecm_A Ring finger and CHY zin 99.3 1.8E-12 6.2E-17 94.5 3.6 50 203-253 4-54 (55)
12 3ng2_A RNF4, snurf, ring finge 99.2 2.8E-12 9.6E-17 98.3 3.4 53 203-256 9-65 (71)
13 2ea6_A Ring finger protein 4; 99.2 2.5E-12 8.6E-17 97.8 3.0 52 202-254 13-68 (69)
14 2xeu_A Ring finger protein 4; 99.2 4.9E-12 1.7E-16 94.8 2.8 51 204-255 3-57 (64)
15 3dpl_R Ring-box protein 1; ubi 99.2 9.1E-12 3.1E-16 104.1 4.6 50 203-253 36-100 (106)
16 2djb_A Polycomb group ring fin 99.2 1.5E-11 5E-16 95.0 4.8 52 203-257 14-65 (72)
17 2d8t_A Dactylidin, ring finger 99.2 4.8E-12 1.6E-16 97.5 1.5 50 202-255 13-62 (71)
18 2ecn_A Ring finger protein 141 99.2 9.9E-12 3.4E-16 95.2 2.8 50 202-256 13-62 (70)
19 2ecy_A TNF receptor-associated 99.2 1.3E-11 4.6E-16 93.5 3.3 50 203-255 14-63 (66)
20 2ct2_A Tripartite motif protei 99.2 2.4E-11 8.1E-16 96.9 4.9 53 203-255 14-69 (88)
21 1chc_A Equine herpes virus-1 r 99.1 1.8E-11 6.1E-16 93.2 3.9 49 204-255 5-53 (68)
22 2ysl_A Tripartite motif-contai 99.1 2.1E-11 7.2E-16 94.0 3.9 51 202-255 18-70 (73)
23 2yur_A Retinoblastoma-binding 99.1 3.2E-11 1.1E-15 93.7 3.8 50 203-255 14-65 (74)
24 2csy_A Zinc finger protein 183 99.1 3.9E-11 1.3E-15 94.7 3.9 48 202-253 13-60 (81)
25 1g25_A CDK-activating kinase a 99.1 5E-11 1.7E-15 90.1 3.7 52 204-255 3-56 (65)
26 1t1h_A Gspef-atpub14, armadill 99.1 5.4E-11 1.8E-15 93.0 3.9 49 203-254 7-55 (78)
27 2ysj_A Tripartite motif-contai 99.1 7.7E-11 2.6E-15 88.4 4.2 44 202-248 18-63 (63)
28 4a0k_B E3 ubiquitin-protein li 99.1 1.8E-11 6.2E-16 103.9 0.3 50 203-253 47-111 (117)
29 2ecw_A Tripartite motif-contai 99.0 1.3E-10 4.4E-15 91.6 4.6 50 203-255 18-72 (85)
30 2ecj_A Tripartite motif-contai 99.0 1E-10 3.6E-15 85.9 3.4 44 202-248 13-58 (58)
31 3lrq_A E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 97.0 2.9 49 204-254 22-70 (100)
32 4ayc_A E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 102.5 2.7 47 204-254 53-99 (138)
33 2egp_A Tripartite motif-contai 99.0 3.8E-11 1.3E-15 93.8 0.5 50 202-254 10-65 (79)
34 2ct0_A Non-SMC element 1 homol 99.0 1.5E-10 5.2E-15 90.3 3.9 53 203-257 14-67 (74)
35 2ecv_A Tripartite motif-contai 99.0 1.6E-10 5.5E-15 91.1 3.7 50 203-255 18-72 (85)
36 3ztg_A E3 ubiquitin-protein li 99.0 2E-10 6.9E-15 92.6 3.9 49 202-253 11-61 (92)
37 3fl2_A E3 ubiquitin-protein li 99.0 2.3E-10 7.9E-15 97.6 4.4 48 204-254 52-99 (124)
38 4ap4_A E3 ubiquitin ligase RNF 98.9 2.2E-10 7.5E-15 97.7 2.8 53 203-256 6-62 (133)
39 2y43_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 91.8 3.3 48 204-254 22-69 (99)
40 1z6u_A NP95-like ring finger p 98.9 6.7E-10 2.3E-14 98.2 4.2 49 204-255 78-126 (150)
41 2ckl_B Ubiquitin ligase protei 98.9 5.1E-10 1.7E-14 100.1 3.3 49 204-254 54-102 (165)
42 2ckl_A Polycomb group ring fin 98.9 5E-10 1.7E-14 93.2 3.0 49 204-255 15-63 (108)
43 1e4u_A Transcriptional repress 98.9 1.5E-09 5E-14 85.6 5.1 53 203-256 10-64 (78)
44 3l11_A E3 ubiquitin-protein li 98.9 3.1E-10 1E-14 95.4 0.6 48 204-254 15-62 (115)
45 1jm7_A BRCA1, breast cancer ty 98.8 9.6E-10 3.3E-14 91.5 3.1 49 204-255 21-71 (112)
46 3hct_A TNF receptor-associated 98.8 8.4E-10 2.9E-14 93.4 2.3 49 204-255 18-66 (118)
47 1rmd_A RAG1; V(D)J recombinati 98.8 1.3E-09 4.6E-14 91.6 3.4 50 204-256 23-72 (116)
48 4ap4_A E3 ubiquitin ligase RNF 98.8 1.2E-09 4.1E-14 93.1 3.0 52 203-255 71-126 (133)
49 2ek8_A Aminopeptidase; metallo 98.8 2.5E-08 8.6E-13 101.9 12.4 92 46-144 90-181 (421)
50 3knv_A TNF receptor-associated 98.8 1.2E-09 4E-14 95.8 1.5 48 203-253 30-77 (141)
51 1bor_A Transcription factor PM 98.8 1.1E-09 3.7E-14 80.6 0.9 47 203-256 5-51 (56)
52 2kr4_A Ubiquitin conjugation f 98.7 4.8E-09 1.6E-13 83.9 3.8 48 203-254 13-60 (85)
53 2y1n_A E3 ubiquitin-protein li 98.7 4.1E-09 1.4E-13 106.2 3.7 49 204-255 332-380 (389)
54 2kre_A Ubiquitin conjugation f 98.7 5.6E-09 1.9E-13 86.1 3.1 48 203-254 28-75 (100)
55 1wgm_A Ubiquitin conjugation f 98.7 6.1E-09 2.1E-13 85.6 3.3 48 203-254 21-69 (98)
56 3iib_A Peptidase M28; YP_92679 98.7 1.3E-07 4.3E-12 97.5 13.0 107 36-147 93-216 (444)
57 2vje_A E3 ubiquitin-protein li 98.7 5.1E-09 1.8E-13 79.2 1.7 46 204-253 8-56 (64)
58 2c2l_A CHIP, carboxy terminus 98.6 6.3E-09 2.2E-13 99.5 2.1 49 203-254 207-255 (281)
59 1jm7_B BARD1, BRCA1-associated 98.6 5.3E-09 1.8E-13 88.2 0.9 44 204-253 22-66 (117)
60 2vje_B MDM4 protein; proto-onc 98.6 9.2E-09 3.2E-13 77.5 1.5 46 204-253 7-55 (63)
61 4ic3_A E3 ubiquitin-protein li 98.6 1.3E-08 4.6E-13 78.9 1.2 43 204-254 24-67 (74)
62 2yu4_A E3 SUMO-protein ligase 98.5 2.6E-08 8.8E-13 81.0 3.0 46 203-251 6-59 (94)
63 3hcs_A TNF receptor-associated 98.5 2.4E-08 8.4E-13 89.4 2.2 49 204-255 18-66 (170)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.5 4.5E-08 1.5E-12 73.2 3.0 48 203-253 5-58 (60)
65 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.5E-08 5E-13 99.9 -0.3 53 202-254 306-373 (381)
66 3fed_A Glutamate carboxypeptid 98.5 1.1E-07 3.9E-12 103.0 6.2 105 40-146 118-268 (707)
67 2f42_A STIP1 homology and U-bo 98.5 4.1E-08 1.4E-12 89.2 1.9 49 203-254 105-153 (179)
68 1wim_A KIAA0161 protein; ring 98.4 7.2E-08 2.5E-12 78.1 2.3 48 204-251 5-61 (94)
69 3kas_A Transferrin receptor pr 98.4 4.2E-07 1.4E-11 97.6 7.4 96 46-145 105-230 (640)
70 2ecg_A Baculoviral IAP repeat- 98.4 9.2E-08 3.2E-12 74.3 1.5 43 204-254 25-68 (75)
71 2ea5_A Cell growth regulator w 98.3 2.5E-07 8.7E-12 70.7 2.7 45 203-255 14-59 (68)
72 2yho_A E3 ubiquitin-protein li 98.2 2.3E-07 7.8E-12 73.0 0.7 44 204-255 18-62 (79)
73 3htk_C E3 SUMO-protein ligase 98.2 5.1E-07 1.7E-11 86.2 2.5 50 203-254 180-232 (267)
74 2bay_A PRE-mRNA splicing facto 98.1 4.9E-07 1.7E-11 67.7 1.1 49 204-256 3-52 (61)
75 3t6p_A Baculoviral IAP repeat- 98.0 6.9E-07 2.3E-11 89.1 0.1 44 203-254 294-338 (345)
76 3vk6_A E3 ubiquitin-protein li 97.9 5.7E-06 2E-10 67.4 3.2 48 206-255 3-50 (101)
77 1y9z_A Alkaline serine proteas 97.8 3.6E-05 1.2E-09 78.9 7.9 86 60-146 258-350 (441)
78 3i6s_A Subtilisin-like proteas 97.8 2.1E-05 7.1E-10 84.7 6.2 86 51-146 259-346 (649)
79 1xf1_A C5A peptidase, SCP; hyd 97.7 6E-05 2.1E-09 84.3 9.0 75 60-142 269-343 (926)
80 3nw0_A Non-structural maintena 97.5 3.4E-05 1.2E-09 73.0 3.2 50 204-255 180-230 (238)
81 2ko5_A Ring finger protein Z; 93.8 0.072 2.4E-06 42.7 4.7 49 203-257 27-76 (99)
82 2lri_C Autoimmune regulator; Z 92.0 0.079 2.7E-06 39.8 2.5 47 203-252 11-60 (66)
83 2jun_A Midline-1; B-BOX, TRIM, 92.0 0.057 1.9E-06 43.3 1.8 34 204-237 3-36 (101)
84 3vta_A Cucumisin; subtilisin-l 85.5 0.71 2.4E-05 49.1 5.0 71 61-145 269-339 (621)
85 1wil_A KIAA1045 protein; ring 80.2 0.78 2.7E-05 36.0 2.0 31 203-237 14-47 (89)
86 1weo_A Cellulose synthase, cat 78.2 3.6 0.00012 32.5 5.2 58 204-261 16-77 (93)
87 1we9_A PHD finger family prote 77.2 0.53 1.8E-05 34.6 0.2 49 203-251 5-58 (64)
88 2k16_A Transcription initiatio 75.8 0.48 1.6E-05 36.0 -0.4 50 204-254 18-71 (75)
89 2l5u_A Chromodomain-helicase-D 75.1 1.1 3.6E-05 32.8 1.4 46 203-251 10-58 (61)
90 2cs3_A Protein C14ORF4, MY039 72.1 2.8 9.6E-05 32.5 3.1 36 204-240 15-52 (93)
91 1mm2_A MI2-beta; PHD, zinc fin 70.3 0.54 1.8E-05 34.4 -1.2 49 202-253 7-58 (61)
92 3m62_A Ubiquitin conjugation f 67.6 1.9 6.5E-05 48.0 1.9 49 203-255 890-939 (968)
93 1wem_A Death associated transc 65.1 1.8 6.2E-05 32.8 0.8 48 204-252 16-71 (76)
94 3u5n_A E3 ubiquitin-protein li 63.2 0.92 3.1E-05 41.3 -1.5 47 202-251 5-54 (207)
95 2ysm_A Myeloid/lymphoid or mix 61.6 1.4 4.9E-05 35.8 -0.4 47 203-249 6-55 (111)
96 3v43_A Histone acetyltransfera 61.3 6.1 0.00021 32.2 3.4 46 204-249 5-62 (112)
97 1f62_A Transcription factor WS 60.6 2.5 8.6E-05 29.4 0.8 45 206-250 2-49 (51)
98 3o36_A Transcription intermedi 60.6 1.4 4.7E-05 39.3 -0.8 45 204-251 4-51 (184)
99 2yt5_A Metal-response element- 60.6 0.95 3.3E-05 33.3 -1.5 50 202-251 4-61 (66)
100 2lbm_A Transcriptional regulat 60.3 6.5 0.00022 33.8 3.5 46 202-250 61-116 (142)
101 3lqh_A Histone-lysine N-methyl 58.6 1.6 5.6E-05 39.2 -0.6 48 204-251 2-63 (183)
102 1xwh_A Autoimmune regulator; P 58.5 1.7 6E-05 32.1 -0.4 47 203-252 7-56 (66)
103 2yql_A PHD finger protein 21A; 57.4 0.83 2.8E-05 32.7 -2.3 45 203-250 8-55 (56)
104 1weu_A Inhibitor of growth fam 52.9 3.9 0.00013 32.5 0.7 43 203-252 35-86 (91)
105 2puy_A PHD finger protein 21A; 50.8 1.2 4.2E-05 32.2 -2.3 48 203-253 4-54 (60)
106 1wew_A DNA-binding family prot 50.2 4.4 0.00015 30.9 0.7 48 204-252 16-73 (78)
107 1wen_A Inhibitor of growth fam 49.5 5.8 0.0002 29.8 1.2 43 203-252 15-66 (71)
108 1fp0_A KAP-1 corepressor; PHD 48.4 4.6 0.00016 31.9 0.5 45 203-250 24-71 (88)
109 1wep_A PHF8; structural genomi 48.1 10 0.00034 28.9 2.4 48 204-252 12-64 (79)
110 2vpb_A Hpygo1, pygopus homolog 48.0 9.7 0.00033 28.1 2.3 34 203-236 7-42 (65)
111 2ro1_A Transcription intermedi 47.1 2.4 8.3E-05 38.0 -1.5 45 204-251 2-49 (189)
112 1wev_A Riken cDNA 1110020M19; 46.8 3.1 0.00011 32.6 -0.7 50 204-253 16-74 (88)
113 3i2d_A E3 SUMO-protein ligase 46.6 11 0.00039 37.3 3.2 47 205-253 250-299 (371)
114 2ri7_A Nucleosome-remodeling f 46.0 4.1 0.00014 35.6 -0.1 47 204-251 8-59 (174)
115 2kgg_A Histone demethylase jar 44.7 4.7 0.00016 28.3 0.0 44 206-249 4-52 (52)
116 3ql9_A Transcriptional regulat 43.7 19 0.00066 30.3 3.7 47 202-251 55-111 (129)
117 2kwj_A Zinc finger protein DPF 43.1 5 0.00017 32.9 -0.0 45 205-249 2-59 (114)
118 4fo9_A E3 SUMO-protein ligase 41.9 15 0.00051 36.3 3.1 47 205-253 216-265 (360)
119 2lv9_A Histone-lysine N-methyl 40.4 5.2 0.00018 32.0 -0.4 45 205-250 29-75 (98)
120 3ask_A E3 ubiquitin-protein li 40.2 5.3 0.00018 37.0 -0.3 47 204-250 174-224 (226)
121 3v43_A Histone acetyltransfera 39.6 5.2 0.00018 32.7 -0.5 46 205-250 62-111 (112)
122 1wee_A PHD finger family prote 39.4 3.2 0.00011 31.1 -1.6 48 204-252 16-67 (72)
123 2cu8_A Cysteine-rich protein 2 38.5 10 0.00034 28.1 1.1 40 204-254 9-48 (76)
124 2o35_A Hypothetical protein DU 37.9 11 0.00039 30.3 1.3 13 228-240 42-54 (105)
125 1g47_A Pinch protein; LIM doma 37.9 13 0.00043 27.4 1.5 42 203-254 10-51 (77)
126 3fyb_A Protein of unknown func 37.4 12 0.0004 30.1 1.3 13 228-240 41-53 (104)
127 2dj7_A Actin-binding LIM prote 36.7 9.6 0.00033 28.8 0.7 39 204-253 15-53 (80)
128 2e6s_A E3 ubiquitin-protein li 36.2 6.6 0.00023 30.0 -0.3 47 204-250 26-76 (77)
129 1wyh_A SLIM 2, skeletal muscle 36.0 16 0.00054 26.5 1.8 40 204-253 5-44 (72)
130 1x4k_A Skeletal muscle LIM-pro 36.0 16 0.00053 26.5 1.8 39 205-253 6-44 (72)
131 1iml_A CRIP, cysteine rich int 35.9 7.7 0.00026 28.7 0.0 41 204-249 27-68 (76)
132 2e6r_A Jumonji/ARID domain-con 35.5 2.7 9.4E-05 33.3 -2.7 49 203-251 15-66 (92)
133 2co8_A NEDD9 interacting prote 34.6 10 0.00036 28.6 0.6 40 204-254 15-54 (82)
134 2l43_A N-teminal domain from h 33.5 21 0.00071 27.8 2.2 51 203-253 24-77 (88)
135 1zbd_B Rabphilin-3A; G protein 33.4 12 0.00041 31.7 0.8 33 203-235 54-88 (134)
136 3o70_A PHD finger protein 13; 33.1 5.7 0.00019 29.6 -1.1 47 203-250 18-66 (68)
137 2d8v_A Zinc finger FYVE domain 32.3 15 0.00051 27.3 1.0 31 203-237 7-38 (67)
138 1z60_A TFIIH basal transcripti 31.7 16 0.00053 26.6 1.1 43 205-248 16-58 (59)
139 2yw8_A RUN and FYVE domain-con 31.4 18 0.00061 27.7 1.4 34 204-237 19-53 (82)
140 3shb_A E3 ubiquitin-protein li 30.5 4.9 0.00017 30.8 -1.9 45 206-250 28-76 (77)
141 1x63_A Skeletal muscle LIM-pro 29.8 21 0.0007 26.6 1.6 41 204-254 15-55 (82)
142 4gne_A Histone-lysine N-methyl 29.4 21 0.00073 29.0 1.7 42 203-250 14-61 (107)
143 2xb1_A Pygopus homolog 2, B-ce 28.9 20 0.00068 28.9 1.4 49 204-252 3-62 (105)
144 1x61_A Thyroid receptor intera 28.6 22 0.00076 25.7 1.5 39 204-252 5-43 (72)
145 3asl_A E3 ubiquitin-protein li 27.8 7.7 0.00026 29.0 -1.2 45 206-250 20-68 (70)
146 3a1b_A DNA (cytosine-5)-methyl 27.5 34 0.0012 29.8 2.7 45 201-249 76-132 (159)
147 3f6q_B LIM and senescent cell 27.3 22 0.00077 25.4 1.3 42 204-255 11-52 (72)
148 3c6w_A P28ING5, inhibitor of g 26.6 7.5 0.00026 28.1 -1.4 43 204-250 9-57 (59)
149 1x64_A Alpha-actinin-2 associa 26.4 29 0.00098 26.4 1.9 40 203-254 24-63 (89)
150 2vnf_A ING 4, P29ING4, inhibit 25.8 7.7 0.00026 28.0 -1.5 40 204-250 10-58 (60)
151 3t7l_A Zinc finger FYVE domain 25.6 27 0.00093 27.2 1.6 51 204-254 20-76 (90)
152 1x4l_A Skeletal muscle LIM-pro 25.0 26 0.00088 25.4 1.3 40 204-253 5-46 (72)
153 1z2q_A LM5-1; membrane protein 23.2 33 0.0011 26.2 1.7 34 204-237 21-55 (84)
154 3mpx_A FYVE, rhogef and PH dom 23.0 18 0.0006 35.9 0.0 49 204-252 375-430 (434)
155 1x68_A FHL5 protein; four-and- 22.9 29 0.00099 25.5 1.2 40 204-253 5-46 (76)
156 1zfo_A LAsp-1; LIM domain, zin 22.6 15 0.00052 22.7 -0.4 27 205-233 4-30 (31)
157 1vfy_A Phosphatidylinositol-3- 22.5 33 0.0011 25.5 1.4 32 205-236 12-44 (73)
158 1a7i_A QCRP2 (LIM1); LIM domai 22.4 19 0.00067 26.8 0.1 39 204-253 7-45 (81)
159 2dar_A PDZ and LIM domain prot 22.3 35 0.0012 25.9 1.7 39 204-254 25-63 (90)
160 2ysm_A Myeloid/lymphoid or mix 22.3 8.9 0.0003 31.0 -2.0 46 206-251 56-104 (111)
161 1y02_A CARP2, FYVE-ring finger 21.8 7.8 0.00027 32.3 -2.4 47 204-251 19-66 (120)
162 2l4z_A DNA endonuclease RBBP8, 21.6 27 0.00092 28.7 0.9 39 204-253 61-99 (123)
163 2d8x_A Protein pinch; LIM doma 21.5 35 0.0012 24.5 1.4 39 204-254 5-43 (70)
164 1m3v_A FLIN4, fusion of the LI 21.3 62 0.0021 26.1 3.1 48 205-254 33-81 (122)
165 3zyq_A Hepatocyte growth facto 21.1 29 0.00098 31.8 1.0 35 204-238 164-199 (226)
166 2ku3_A Bromodomain-containing 20.9 55 0.0019 24.3 2.4 49 203-251 15-66 (71)
167 2jmo_A Parkin; IBR, E3 ligase, 20.8 5.7 0.0002 30.4 -3.2 14 224-237 55-68 (80)
168 1dvp_A HRS, hepatocyte growth 20.8 28 0.00097 31.5 0.9 34 204-237 161-195 (220)
169 1x4u_A Zinc finger, FYVE domai 20.5 39 0.0013 25.8 1.6 33 204-236 14-47 (84)
170 1joc_A EEA1, early endosomal a 20.5 33 0.0011 28.5 1.2 33 204-236 69-102 (125)
171 2d8y_A Eplin protein; LIM doma 20.5 36 0.0012 25.9 1.4 40 204-254 15-54 (91)
172 2g6q_A Inhibitor of growth pro 20.3 12 0.00041 27.2 -1.4 43 204-250 11-59 (62)
173 2l3k_A Rhombotin-2, linker, LI 20.3 22 0.00074 29.0 -0.0 35 204-239 36-70 (123)
174 2cor_A Pinch protein; LIM doma 20.1 30 0.001 25.8 0.8 38 204-253 15-52 (79)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=174.15 Aligned_cols=126 Identities=23% Similarity=0.309 Sum_probs=101.5
Q ss_pred CeeEEecccccccCCcCCCCCeeEEEEecC---CccCCCCCccCccccC----CCcceEEEEecCC-CCHHHHHHHHHHc
Q 014723 28 NVTLSFDDIEANFAPAIRGSGDCGVLYVAE---PLDACSNLTSKVEKVS----NMSSAFVLTIRGG-CSFEDKVRNAQKA 99 (419)
Q Consensus 28 ~~~~~f~~~~A~Fg~~~~~~~~~G~l~~a~---p~daC~pl~~~~~~~~----~~~~~IaLV~RG~-CsF~~Kv~nAq~a 99 (419)
|.++.|.+.+|.||...+..++.|.|+.+. +.+||++++++..... ..+++||||+||+ |+|.+|++|||++
T Consensus 49 n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~a 128 (194)
T 3icu_A 49 NRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYER 128 (194)
T ss_dssp TCEEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHT
T ss_pred cceeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHC
Confidence 567789999999999999999999998764 7899999876433211 2478999999999 9999999999999
Q ss_pred CCceEEEeecC-CCcceeeccCCCCceEEeEEEeechhhHHHHHhhCCC-cEEEEEe
Q 014723 100 GFEAAIVYDNE-DDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGST-DMEIWII 154 (419)
Q Consensus 100 GA~avIv~nn~-~~~~~~~m~g~~~~i~IPsv~Is~~~G~~L~~~l~~~-~veV~II 154 (419)
||+||||||++ ++.....|.... ...||++||++.+|+.|++.+..+ .+.+.|.
T Consensus 129 GA~avIIyNn~~~g~~~~~m~~~~-~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~ 184 (194)
T 3icu_A 129 GASGAVIFNFPGTRNEVIPMSHPG-AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIE 184 (194)
T ss_dssp TCSEEEEECCTTCTTCCCCCCCTT-CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCcEEEEEeCCCCCCceeeecCCC-CCceeEEEECHHHHHHHHHHHHCCCeEEEEEE
Confidence 99999999985 333455565433 357999999999999999988654 4555543
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.61 E-value=4.5e-16 Score=126.46 Aligned_cols=79 Identities=29% Similarity=0.554 Sum_probs=68.5
Q ss_pred cccccCchhhHHhcCCcceeccccccCCCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 175 GREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 175 ~r~~~g~~~~~i~~lp~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
....++++++.++.||...+.........+..|+||+++|..++.++.|||+|.||..||++|++.+ ..||+||+.+..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence 3456789999999999988887665556678999999999999999999999999999999999874 569999998754
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-15 Score=116.76 Aligned_cols=71 Identities=35% Similarity=0.815 Sum_probs=57.5
Q ss_pred hHHhcCCcceeccccccCCCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 184 RLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 184 ~~i~~lp~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
..++.+|...++... ...++.+|+||+++|..++.++.+||+|.||..||++|++.+ ..||+||+.+.+..
T Consensus 4 ~~i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGPSS 74 (75)
T ss_dssp CCCSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCCCC
T ss_pred hhHhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCCCC
Confidence 345677777776533 233468999999999999999999999999999999999884 46999999887643
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=7.6e-14 Score=108.34 Aligned_cols=54 Identities=35% Similarity=0.864 Sum_probs=47.6
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
..+..|+||+++|..++.++.|+|+|.||..||.+|++.+. .||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccccc
Confidence 34679999999999999999999999999999999999854 6999999887543
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=5.7e-14 Score=110.14 Aligned_cols=58 Identities=36% Similarity=0.896 Sum_probs=49.8
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCCCCCC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 260 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~p~ 260 (419)
..+.+|+||++.|..++.++.++|+|.||..||.+|++.+ ..||+||+.+......+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 3468999999999999889999999999999999999874 569999999887654433
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=104.56 Aligned_cols=54 Identities=43% Similarity=0.939 Sum_probs=47.3
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
..+..|+||++.|..++.++.++|+|.||..||.+|++... .||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccCcC
Confidence 34688999999999888899999999999999999999844 5999999886543
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.39 E-value=3.3e-13 Score=113.41 Aligned_cols=63 Identities=29% Similarity=0.567 Sum_probs=50.2
Q ss_pred CCccceecCcccCCC---------------eeEEecCCChhhHHhHHHHHh----cCCCCCcccccccccCCCCCCCCCC
Q 014723 204 SRTCAICLEDYSVGE---------------KLRILPCRHKFHAFCVDSWLT----SWRTFCPVCKRDARTSTGEPPASES 264 (419)
Q Consensus 204 ~~~C~ICle~~~~~~---------------~~~~LpC~H~Fh~~Ci~~Wl~----~~~~~CP~Cr~~~~~~~~~p~~~~~ 264 (419)
+..|+||+++|..+. .++.++|+|.||..||.+|+. ..+..||+||+.+....++.|...-
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~m 104 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKM 104 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCeE
Confidence 568999999997653 445789999999999999995 2355799999999888777766554
Q ss_pred CC
Q 014723 265 TP 266 (419)
Q Consensus 265 ~~ 266 (419)
+-
T Consensus 105 ~~ 106 (114)
T 1v87_A 105 EV 106 (114)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.38 E-value=1.2e-13 Score=100.99 Aligned_cols=50 Identities=46% Similarity=1.023 Sum_probs=44.6
Q ss_pred CCCccceecCcccCCCeeEEec-CCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
++.+|+||+++|..++....++ |+|.||..||.+|++. +..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3578999999999998899998 9999999999999988 456999998764
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1e-12 Score=104.26 Aligned_cols=51 Identities=29% Similarity=0.711 Sum_probs=40.4
Q ss_pred CCccceecCcccC-----------CCeeEEec-CCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSV-----------GEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~-----------~~~~~~Lp-C~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
++.|+||+++|.. ++.++.++ |+|.||..||++||+.+ .+||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcchh
Confidence 4668888877754 45566666 99999999999999985 4699999987643
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=102.88 Aligned_cols=57 Identities=28% Similarity=0.603 Sum_probs=46.2
Q ss_pred cCCCCCccceecCcccCCCeeEEecCC-----ChhhHHhHHHHHhcCC-CCCcccccccccCCC
Q 014723 200 DNCTSRTCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTSWR-TFCPVCKRDARTSTG 257 (419)
Q Consensus 200 ~~~~~~~C~ICle~~~~~~~~~~LpC~-----H~Fh~~Ci~~Wl~~~~-~~CP~Cr~~~~~~~~ 257 (419)
....+..|.||+++|..++.+ ++||. |.||..||++||.... .+||+||..+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 334468899999999877776 58996 9999999999998743 579999999875543
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.27 E-value=1.8e-12 Score=94.48 Aligned_cols=50 Identities=34% Similarity=0.721 Sum_probs=42.8
Q ss_pred CCCccceecCcccCC-CeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 203 TSRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~~~~-~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
.+.+|+||+++|.++ +..+.++|+|.||..||++|++.. ..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 467899999999654 467889999999999999999985 56999998764
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.24 E-value=2.8e-12 Score=98.31 Aligned_cols=53 Identities=25% Similarity=0.607 Sum_probs=44.7
Q ss_pred CCCccceecCcccCC----CeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 203 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 203 ~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
++.+|+||++.|.++ +....++|+|.||..||++|++.. ..||+||+.+....
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhh
Confidence 467899999999764 566889999999999999999885 46999999887543
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-12 Score=97.82 Aligned_cols=52 Identities=25% Similarity=0.639 Sum_probs=43.5
Q ss_pred CCCCccceecCcccCC----CeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 202 CTSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
.....|+||++.|.++ +.+..++|+|.||..||++|++. +..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3468899999999764 45578999999999999999988 4569999998753
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=4.9e-12 Score=94.77 Aligned_cols=51 Identities=25% Similarity=0.639 Sum_probs=43.6
Q ss_pred CCccceecCcccCC----CeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+.+|+||++.|.++ +.+..++|+|.||..||++|++. +..||+||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcc
Confidence 57899999999764 55688899999999999999988 55699999988654
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.19 E-value=9.1e-12 Score=104.07 Aligned_cols=50 Identities=30% Similarity=0.659 Sum_probs=42.1
Q ss_pred CCCccceecCcccCC---------------CeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 203 TSRTCAICLEDYSVG---------------EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~~~~---------------~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
.++.|+||++.|... ..++.++|+|.||..||++||.. +.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 467899999999754 13677899999999999999998 556999999854
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=95.05 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=42.5
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCCC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 257 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~ 257 (419)
....|+||++.|.++ +..++|+|.||..||.+|++. +..||+||+.+...+.
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccc
Confidence 357899999999875 333499999999999999987 4569999998875543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.8e-12 Score=97.53 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=42.6
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
.++..|+||++.+.++ +.++|+|.||..||.+|+... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHh
Confidence 3467899999998665 678999999999999999874 5699999988654
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=9.9e-12 Score=95.23 Aligned_cols=50 Identities=30% Similarity=0.836 Sum_probs=42.5
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
.....|+||++.+.+ ..++|+|.||..||.+|+.. +..||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 346899999999876 77899999999999999986 556999999887543
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=93.54 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=42.1
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
....|+||++.+.++ ..++|+|.||..||.+|++..+..||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 467899999999877 34799999999999999965566799999987654
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.4e-11 Score=96.92 Aligned_cols=53 Identities=26% Similarity=0.655 Sum_probs=44.7
Q ss_pred CCCccceecCcccCCCe-eEEecCCChhhHHhHHHHHhcC--CCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~Ci~~Wl~~~--~~~CP~Cr~~~~~~ 255 (419)
...+|+||++.|.+.+. .+.++|+|.||..||.+|++.. ...||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 46789999999988654 6788999999999999999874 35699999987654
No 21
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=1.8e-11 Score=93.16 Aligned_cols=49 Identities=37% Similarity=0.809 Sum_probs=41.9
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+..|+||++.+.++ .+.++|+|.||..||.+|++.. ..||+||..+...
T Consensus 5 ~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCCE
T ss_pred CCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHhh
Confidence 57899999998754 5789999999999999999874 5699999988643
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.1e-11 Score=93.96 Aligned_cols=51 Identities=25% Similarity=0.518 Sum_probs=42.1
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc--CCCCCcccccccccC
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKRDARTS 255 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~--~~~~CP~Cr~~~~~~ 255 (419)
..+..|+||++.|.++ ..++|+|.||..||.+|++. ....||+||+.+...
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3468999999998764 66799999999999999973 355799999987643
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.11 E-value=3.2e-11 Score=93.70 Aligned_cols=50 Identities=20% Similarity=0.569 Sum_probs=41.6
Q ss_pred CCCccceecCcccCCCeeEEec-CCChhhHHhHHHHHhcC-CCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSW-RTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~Ci~~Wl~~~-~~~CP~Cr~~~~~~ 255 (419)
.+..|+||++.|.++ +.++ |+|.||..||..|++.. ...||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 357899999999876 6699 99999999999999863 24699999975543
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.9e-11 Score=94.66 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=41.2
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
.....|+||++.|.++ .+++|+|.||..||.+|++. ...||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 3457899999999765 56899999999999999987 456999999875
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=5e-11 Score=90.08 Aligned_cols=52 Identities=27% Similarity=0.510 Sum_probs=43.0
Q ss_pred CCccceecC-cccCCCe-eEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLE-DYSVGEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle-~~~~~~~-~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+..|+||++ .|.++.. ...++|||.||..||++|+......||+||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 578999999 7777643 356799999999999999877666799999988654
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.08 E-value=5.4e-11 Score=93.02 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=42.5
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
.+..|+||++.|.++ +.++|||.||..||.+|+...+..||+||+.+..
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 468999999999876 6679999999999999998756679999998754
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.7e-11 Score=88.38 Aligned_cols=44 Identities=25% Similarity=0.530 Sum_probs=37.5
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc--CCCCCccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVC 248 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~--~~~~CP~C 248 (419)
..+..|+||++.|.++ +.++|+|.||..||.+|++. .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3468999999999876 66799999999999999984 35569998
No 28
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.06 E-value=1.8e-11 Score=103.91 Aligned_cols=50 Identities=32% Similarity=0.703 Sum_probs=1.0
Q ss_pred CCCccceecCcccCC-------------C--eeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 203 TSRTCAICLEDYSVG-------------E--KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~~~~-------------~--~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
.++.|+||+++|... + .+..++|+|.||..||++||+. +..||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 357899999999753 2 2334589999999999999998 456999999854
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=1.3e-10 Score=91.64 Aligned_cols=50 Identities=30% Similarity=0.521 Sum_probs=42.4
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC-----CCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-----RTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~-----~~~CP~Cr~~~~~~ 255 (419)
.+..|+||++.|.++ ..++|+|.||..||..|+... ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 467999999999876 578999999999999999872 45699999987643
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1e-10 Score=85.85 Aligned_cols=44 Identities=32% Similarity=0.805 Sum_probs=37.0
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc--CCCCCccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVC 248 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~--~~~~CP~C 248 (419)
.....|+||++.+.++ +.++|+|.||..||.+|+.. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3467999999999876 55899999999999999754 45679998
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.03 E-value=7.9e-11 Score=96.97 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=41.6
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
+..|+||++.|.++ +..++|+|.||..||.+|+...+..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 47899999999764 33389999999999999999865679999998854
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.02 E-value=7.9e-11 Score=102.54 Aligned_cols=47 Identities=30% Similarity=0.946 Sum_probs=40.6
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
+..|+||++.|.++ +.+||||.||..||..|+.. +..||+||+++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 46899999999765 67899999999999999987 4569999998753
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.01 E-value=3.8e-11 Score=93.82 Aligned_cols=50 Identities=28% Similarity=0.485 Sum_probs=42.2
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC------CCCCccccccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW------RTFCPVCKRDART 254 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~------~~~CP~Cr~~~~~ 254 (419)
..+..|+||++.|.++ +.++|+|.||..||.+|+... ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3468899999999876 558999999999999999763 4569999998864
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=90.33 Aligned_cols=53 Identities=23% Similarity=0.463 Sum_probs=42.3
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC-CCCCcccccccccCCC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTSTG 257 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~-~~~CP~Cr~~~~~~~~ 257 (419)
...+|+||++.+..++.. ..|+|.||..||++||+.. +.+||+||++......
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 357899999999876433 3799999999999999874 2569999988764433
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.6e-10 Score=91.10 Aligned_cols=50 Identities=30% Similarity=0.585 Sum_probs=42.1
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc-----CCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~-----~~~~CP~Cr~~~~~~ 255 (419)
....|+||++.|.++ ..++|+|.||..||..|+.. ....||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 467999999999876 56799999999999999976 245699999988753
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.99 E-value=2e-10 Score=92.56 Aligned_cols=49 Identities=20% Similarity=0.547 Sum_probs=41.6
Q ss_pred CCCCccceecCcccCCCeeEEec-CCChhhHHhHHHHHhcC-CCCCcccccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSW-RTFCPVCKRDAR 253 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~Ci~~Wl~~~-~~~CP~Cr~~~~ 253 (419)
..+..|+||++.|.++ +.++ |+|.||..||..|+... ...||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3468999999999877 6889 99999999999999753 357999999864
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.99 E-value=2.3e-10 Score=97.56 Aligned_cols=48 Identities=23% Similarity=0.411 Sum_probs=42.1
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
+..|+||++.|.++ +.++|||.||..||..|+......||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47899999999866 6789999999999999998656579999998865
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=2.2e-10 Score=97.73 Aligned_cols=53 Identities=25% Similarity=0.605 Sum_probs=44.5
Q ss_pred CCCccceecCcccCC----CeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 203 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 203 ~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
++.+|+||++.|.++ +..+.++|||.||..||++|++... .||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCcccc
Confidence 357899999999764 5568899999999999999998854 6999999886543
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.91 E-value=4.6e-10 Score=91.82 Aligned_cols=48 Identities=27% Similarity=0.778 Sum_probs=40.1
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|+||++.|.++ +..++|||.||..||..|+.. +..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 47899999999864 333489999999999999987 4569999998765
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.90 E-value=6.7e-10 Score=98.24 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=42.7
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
...|+||++.|.++ +.++|+|.||..||..|+......||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 47899999999876 56899999999999999997665799999988754
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.90 E-value=5.1e-10 Score=100.09 Aligned_cols=49 Identities=29% Similarity=0.600 Sum_probs=41.4
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|+||++.|.++ +..++|+|.||..||.+|+......||+||..+..
T Consensus 54 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 46899999999864 44459999999999999999756679999998853
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.89 E-value=5e-10 Score=93.16 Aligned_cols=49 Identities=22% Similarity=0.663 Sum_probs=40.9
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+..|+||++.|.++ +..++|||.||..||..|+... ..||+||..+...
T Consensus 15 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS
T ss_pred cCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhC-CcCcCCCcccccc
Confidence 57899999999764 4444999999999999999874 5699999987643
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=1.5e-09 Score=85.62 Aligned_cols=53 Identities=19% Similarity=0.574 Sum_probs=41.9
Q ss_pred CCCccceecCcccCCCeeEEe--cCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 203 TSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
++.+|+||+|.+...+. ..+ +|||.||..|+..|+......||+||+.+....
T Consensus 10 ~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 46789999999865432 334 499999999999998665667999999887653
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.86 E-value=3.1e-10 Score=95.45 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=42.0
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
+..|+||++.|.++ +.++|+|.||..||..|+......||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 46899999999876 6779999999999999998756679999998763
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=9.6e-10 Score=91.54 Aligned_cols=49 Identities=33% Similarity=0.648 Sum_probs=41.0
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCC--CCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR--TFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~--~~CP~Cr~~~~~~ 255 (419)
...|+||++.|.++ ..++|+|.||..||..|+.... ..||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 46899999999876 4579999999999999998643 4699999987653
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.83 E-value=8.4e-10 Score=93.36 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=42.2
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
...|+||++.|.++ +.++|+|.||..||.+|+......||+||..+...
T Consensus 18 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 57899999999876 66899999999999999987555799999987653
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.83 E-value=1.3e-09 Score=91.63 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=42.6
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
+..|+||++.|.++ ..++|||.||..||..|+......||+||..+....
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 47899999999765 558999999999999999875567999999886543
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.82 E-value=1.2e-09 Score=93.09 Aligned_cols=52 Identities=25% Similarity=0.618 Sum_probs=43.6
Q ss_pred CCCccceecCcccCC----CeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+...|+||++.|..+ +..+.++|+|.||..||++|++..+ .||+||..+...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCChh
Confidence 367899999998753 4557889999999999999999854 699999988654
No 49
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.80 E-value=2.5e-08 Score=101.88 Aligned_cols=92 Identities=30% Similarity=0.379 Sum_probs=68.7
Q ss_pred CCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcceeeccCCCCce
Q 014723 46 GSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGI 125 (419)
Q Consensus 46 ~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~~m~g~~~~i 125 (419)
..++.|.|+.+.-. ..+.+ ...+++||||||+||+|.|.+|+++|+++||+||||||+.+. ....+.+.....
T Consensus 90 ~g~v~a~lv~~~~G-~~~D~-----~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~-~~~g~~~~~~~~ 162 (421)
T 2ek8_A 90 NSDVTAELVYVGLG-TTADV-----AGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDG-KLNGTLGGSDAS 162 (421)
T ss_dssp CEEEEEEEEECTTC-CTTTT-----TTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSS-CCCCBCSSCCTT
T ss_pred CCCcceEEEECCCC-Chhhc-----CCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCc-ccccccCCCCCC
Confidence 34678888665422 11211 123679999999999999999999999999999999998754 222233333456
Q ss_pred EEeEEEeechhhHHHHHhh
Q 014723 126 KIHAVFVSKASGEKLKQYA 144 (419)
Q Consensus 126 ~IPsv~Is~~~G~~L~~~l 144 (419)
.||++.|+.++++.|...+
T Consensus 163 ~IP~~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 163 FVAAVGITKQEGDALAANL 181 (421)
T ss_dssp CCEEEEECHHHHHHHHHHH
T ss_pred CccEEEeCHHHHHHHHHHh
Confidence 8999999999999998887
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=1.2e-09 Score=95.75 Aligned_cols=48 Identities=23% Similarity=0.513 Sum_probs=41.7
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
....|+||++.|.++ .+++|||.||..||.+|+......||+||.++.
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 357899999999877 668999999999999999876657999999764
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=1.1e-09 Score=80.59 Aligned_cols=47 Identities=21% Similarity=0.574 Sum_probs=39.3
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
+...|+||++.|.++ +.|+|+|.||..||..| ...||+||+.+....
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence 467899999999876 67899999999999884 446999999876543
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.74 E-value=4.8e-09 Score=83.85 Aligned_cols=48 Identities=8% Similarity=-0.080 Sum_probs=42.3
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
....|+||++.|+++ ++++|||.|++.||..|+.. ..+||+|+..+..
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hheECcccCchhcCC---eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 468999999999988 78899999999999999987 4569999987754
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.72 E-value=4.1e-09 Score=106.24 Aligned_cols=49 Identities=31% Similarity=0.678 Sum_probs=41.8
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
...|+||++.+.++ +.+||+|.||..||..|+......||+||..+...
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 47999999998654 78999999999999999985456799999988654
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.70 E-value=5.6e-09 Score=86.12 Aligned_cols=48 Identities=8% Similarity=-0.062 Sum_probs=42.4
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
....|+||++.|.++ ++++|||.|++.||..|+.. ..+||+||.++..
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHc-CCCCCCCCCCCCh
Confidence 468999999999988 77899999999999999986 5679999988754
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.70 E-value=6.1e-09 Score=85.58 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=42.4
Q ss_pred CCCccceecCcccCCCeeEEecCC-ChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCR-HKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~-H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
.+..|+||++.|+++ ++++|| |.|++.||..|+.. ...||+||.++..
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 368999999999988 778999 99999999999987 4579999988764
No 56
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.67 E-value=1.3e-07 Score=97.52 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=78.0
Q ss_pred cccccCCcCCCCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCC---------HHHHH----HHHHHcCCc
Q 014723 36 IEANFAPAIRGSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCS---------FEDKV----RNAQKAGFE 102 (419)
Q Consensus 36 ~~A~Fg~~~~~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~Cs---------F~~Kv----~nAq~aGA~ 102 (419)
....|++..+..+++|.|+.++..+.|.... ..+++||||||.||.|. |..|. .+|+++||+
T Consensus 93 ~~l~~s~~tp~~~vta~lV~v~~~~~~~~~~-----~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~ 167 (444)
T 3iib_A 93 TALGGSIATPAQGLSATIVRFDTLQDLQNAE-----AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAV 167 (444)
T ss_dssp EECBTCCCCCTTCEEEEEEEESSHHHHHTSC-----TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EeccCCCCCCCCCeEEEEEecCCHHHHhhcc-----ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCe
Confidence 3345666666788999999887766665431 24679999999999995 66774 579999999
Q ss_pred eEEEeecCCCcc---eeeccC-CCCceEEeEEEeechhhHHHHHhhCCC
Q 014723 103 AAIVYDNEDDGV---LVAMAG-NSAGIKIHAVFVSKASGEKLKQYAGST 147 (419)
Q Consensus 103 avIv~nn~~~~~---~~~m~g-~~~~i~IPsv~Is~~~G~~L~~~l~~~ 147 (419)
||||+|+..... ...+.+ ......||++.|+..+|+.|+..+..+
T Consensus 168 avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g 216 (444)
T 3iib_A 168 GIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRD 216 (444)
T ss_dssp EEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTT
T ss_pred EEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCC
Confidence 999999754321 111112 223468999999999999998887654
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.66 E-value=5.1e-09 Score=79.16 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=38.0
Q ss_pred CCccceecCcccCCCeeEEe--cCCCh-hhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRIL--PCRHK-FHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L--pC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
+.+|.||++.+.+. ..+ ||||. |+..|++.|.+.. ..||+||+++.
T Consensus 8 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCC
T ss_pred cCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchh
Confidence 56899999987554 444 99999 8999999999874 45999999875
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=6.3e-09 Score=99.54 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=42.8
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
....|+||++.|.++ ++++|||.||+.||..|+.....+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 468899999999988 7789999999999999998755559999998754
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=5.3e-09 Score=88.24 Aligned_cols=44 Identities=32% Similarity=0.560 Sum_probs=38.7
Q ss_pred CCccceecCcccCCCeeEEe-cCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
...|+||++.|.++ +.+ +|||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 57899999999876 566 8999999999999987 46999999874
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.60 E-value=9.2e-09 Score=77.49 Aligned_cols=46 Identities=22% Similarity=0.545 Sum_probs=38.0
Q ss_pred CCccceecCcccCCCeeEEe--cCCCh-hhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRIL--PCRHK-FHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L--pC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
+..|.||++.+.+. ..+ ||||. ||..|+..|.+.. ..||+||+++.
T Consensus 7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCC
T ss_pred CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhh
Confidence 57899999986543 444 99998 9999999998774 56999999875
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.55 E-value=1.3e-08 Score=78.95 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=36.8
Q ss_pred CCccceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
+..|.||++.+.+. ..+||+|. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 46899999997654 77899999 999999998 459999998754
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=2.6e-08 Score=80.98 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=38.8
Q ss_pred CCCccceecCcccCCCeeEEec-CCChhhHHhHHHHHhcC-----CCCCcc--cccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSW-----RTFCPV--CKRD 251 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~Ci~~Wl~~~-----~~~CP~--Cr~~ 251 (419)
....|+||++.|.++ ++++ |||.|++.||..|+... ...||+ |++.
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 357899999999987 6675 99999999999999763 346999 9865
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.52 E-value=2.4e-08 Score=89.45 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=42.2
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
...|+||++.|.++ +.++|||.||..||.+|+......||+||..+...
T Consensus 18 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 57899999999876 56899999999999999987555799999887653
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.50 E-value=4.5e-08 Score=73.18 Aligned_cols=48 Identities=29% Similarity=0.654 Sum_probs=37.7
Q ss_pred CCCccceecCcccCCCeeEEecCC--C---hhhHHhHHHHHhc-CCCCCcccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCR--H---KFHAFCVDSWLTS-WRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~--H---~Fh~~Ci~~Wl~~-~~~~CP~Cr~~~~ 253 (419)
+...|.||+++. ++.+ ++||. | .||..||.+|+.. .+..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 467899999983 3344 68965 4 8999999999975 4567999998764
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.48 E-value=1.5e-08 Score=99.89 Aligned_cols=53 Identities=28% Similarity=0.576 Sum_probs=40.2
Q ss_pred CCCCccceecCcccCCC----eeE-EecCCChhhHHhHHHHHhcCC----------CCCccccccccc
Q 014723 202 CTSRTCAICLEDYSVGE----KLR-ILPCRHKFHAFCVDSWLTSWR----------TFCPVCKRDART 254 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~----~~~-~LpC~H~Fh~~Ci~~Wl~~~~----------~~CP~Cr~~~~~ 254 (419)
.+..+|+||++.+.+.. +.. ...|+|.||..||.+||+... ..||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45689999999987732 222 346999999999999997521 359999998753
No 66
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.47 E-value=1.1e-07 Score=103.00 Aligned_cols=105 Identities=22% Similarity=0.200 Sum_probs=71.4
Q ss_pred cCCcCCCCCeeEEEEecCCccCCCCCccC-cc-ccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCC-----
Q 014723 40 FAPAIRGSGDCGVLYVAEPLDACSNLTSK-VE-KVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDD----- 112 (419)
Q Consensus 40 Fg~~~~~~~~~G~l~~a~p~daC~pl~~~-~~-~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~----- 112 (419)
|-..-+...++|.|+.++ .||...-.. .. .+.+++||||||+||+|.|.+|+++|+++||+||||||+..+
T Consensus 118 f~ays~~G~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g 195 (707)
T 3fed_A 118 YNAFSAQGMPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPE 195 (707)
T ss_dssp CCTTCCCBCCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTT
T ss_pred ccccCCCCceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccc
Confidence 444344566889988875 566321000 00 034679999999999999999999999999999999986210
Q ss_pred -----------------cceeecc--CCC--------------------CceEEeEEEeechhhHHHHHhhCC
Q 014723 113 -----------------GVLVAMA--GNS--------------------AGIKIHAVFVSKASGEKLKQYAGS 146 (419)
Q Consensus 113 -----------------~~~~~m~--g~~--------------------~~i~IPsv~Is~~~G~~L~~~l~~ 146 (419)
+.+..+. |+. ...+||++-|+..+++.|+..+..
T Consensus 196 ~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 196 VQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 0000000 110 125799999999999999887653
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.45 E-value=4.1e-08 Score=89.17 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=42.1
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
....|+||++.|.++ ++++|||.|++.||..|+.....+||+|+.++..
T Consensus 105 ~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 458899999999987 7789999999999999998743469999987754
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=7.2e-08 Score=78.06 Aligned_cols=48 Identities=27% Similarity=0.713 Sum_probs=39.6
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc----C---CCCCcc--cccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----W---RTFCPV--CKRD 251 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~----~---~~~CP~--Cr~~ 251 (419)
..+|+||++++..++.+...+|+|.||..|+..+++. . ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5689999999987766666689999999999999863 1 346999 9987
No 69
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.37 E-value=4.2e-07 Score=97.56 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCeeEEEEecCCccCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCccee-------e-
Q 014723 46 GSGDCGVLYVAEPLDACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLV-------A- 117 (419)
Q Consensus 46 ~~~~~G~l~~a~p~daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~-------~- 117 (419)
...+.|.|+.+. .||... ..... -+++||||||+||+|.|.+|+++|+++||+|||||++..+.... +
T Consensus 105 ~g~v~g~lV~vg--~G~~~D-~~~l~-vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~ 180 (640)
T 3kas_A 105 AATVTGKLVHAN--FGTKKD-FEDLY-TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGH 180 (640)
T ss_dssp CEEEEECEEECT--TCCHHH-HHTCS-SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEE
T ss_pred CCceEEEEEEec--CCChhh-HHHhh-cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccc
Confidence 345778887764 455321 10000 36799999999999999999999999999999999975421110 0
Q ss_pred --c-cCC-------------------CCceEEeEEEeechhhHHHHHhhC
Q 014723 118 --M-AGN-------------------SAGIKIHAVFVSKASGEKLKQYAG 145 (419)
Q Consensus 118 --m-~g~-------------------~~~i~IPsv~Is~~~G~~L~~~l~ 145 (419)
. .|+ .....||++.|+..+++.|...++
T Consensus 181 ~~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 181 AHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 0 011 012369999999999999987653
No 70
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=9.2e-08 Score=74.25 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=35.4
Q ss_pred CCccceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
+.+|.||++.+.+. ..+||+|. ||..|+..+ ..||+||..+..
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 46799999998664 67899999 999999642 459999998754
No 71
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2.5e-07 Score=70.68 Aligned_cols=45 Identities=31% Similarity=0.729 Sum_probs=36.7
Q ss_pred CCCccceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
++..|.||++.+.+ ...+||+|. ||..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 45789999998755 488999999 99999984 24599999988653
No 72
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.21 E-value=2.3e-07 Score=73.04 Aligned_cols=44 Identities=25% Similarity=0.606 Sum_probs=36.7
Q ss_pred CCccceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+..|.||++.+.+ ...+||||. ||..|+..|. .||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 4689999998765 478899999 9999998872 699999988654
No 73
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.1e-07 Score=86.21 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=41.1
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC-CCCCcc--ccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPV--CKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~-~~~CP~--Cr~~~~~ 254 (419)
.+..|+||++.|.++ ++.+.|||.|++.||..|+... ...||+ |++.+..
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 347899999999876 5556899999999999999763 346999 9987654
No 74
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.13 E-value=4.9e-07 Score=67.69 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=40.8
Q ss_pred CCccceecCcccCCCeeEEe-cCCChhhHHhHHHHHhcCCCCCcccccccccCC
Q 014723 204 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 256 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~ 256 (419)
...|+||++.|.++ ..+ +|||.|.+.||.+|++.+. +||+++.++...+
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCChhh
Confidence 36799999999976 556 8999999999999998754 5999999886543
No 75
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.02 E-value=6.9e-07 Score=89.14 Aligned_cols=44 Identities=27% Similarity=0.688 Sum_probs=37.6
Q ss_pred CCCccceecCcccCCCeeEEecCCCh-hhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
.+..|+||++.+.+. ..+||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457899999998664 77899999 999999988 359999998754
No 76
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.89 E-value=5.7e-06 Score=67.36 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=39.1
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
-|.+|--.+. ...|.+||+|+||.+|+..|.++....||.|+.++...
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 3777766654 45799999999999999999977666799999988644
No 77
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.79 E-value=3.6e-05 Score=78.93 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=63.3
Q ss_pred cCCCCCccCccccCCCcceEEEEecCCC-----CHHHHHHHHHHcCCceEEEeecCCCccee--eccCCCCceEEeEEEe
Q 014723 60 DACSNLTSKVEKVSNMSSAFVLTIRGGC-----SFEDKVRNAQKAGFEAAIVYDNEDDGVLV--AMAGNSAGIKIHAVFV 132 (419)
Q Consensus 60 daC~pl~~~~~~~~~~~~~IaLV~RG~C-----sF~~Kv~nAq~aGA~avIv~nn~~~~~~~--~m~g~~~~i~IPsv~I 132 (419)
++|.+... .....+++|||+|++||+| .|.+|+++++++||+++|||||.....+. ..........||+++|
T Consensus 258 ~~C~~~~~-~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v 336 (441)
T 1y9z_A 258 AECTVNGT-SFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSV 336 (441)
T ss_dssp EEEEEETT-EEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEE
T ss_pred hccccccc-cccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEE
Confidence 45765421 1234578999999999987 89999999999999999999986532111 1111223457899999
Q ss_pred echhhHHHHHhhCC
Q 014723 133 SKASGEKLKQYAGS 146 (419)
Q Consensus 133 s~~~G~~L~~~l~~ 146 (419)
+..+|+.|+.+++.
T Consensus 337 ~~~~g~~l~~~~~~ 350 (441)
T 1y9z_A 337 DRATGLALKAKLGQ 350 (441)
T ss_dssp CHHHHHHHHTTTTS
T ss_pred eHHHHHHHHHHhcC
Confidence 99999999988764
No 78
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=97.77 E-value=2.1e-05 Score=84.68 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=67.1
Q ss_pred EEEEecCCccCCCCCccCccccCCC--cceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcceeeccCCCCceEEe
Q 014723 51 GVLYVAEPLDACSNLTSKVEKVSNM--SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIH 128 (419)
Q Consensus 51 G~l~~a~p~daC~pl~~~~~~~~~~--~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~~m~g~~~~i~IP 128 (419)
..|+.+...+.|.+... +...+ +|||+|++||.|.|.+|..+++++||.++|++|+... +. . ....+|
T Consensus 259 ~plv~~~~~~~C~~~~l---~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~--~~---~--~~~~~P 328 (649)
T 3i6s_A 259 SPVIYNKTLSDCSSEEL---LSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGV--FR---S--ATFPNP 328 (649)
T ss_dssp EEEECCTTTTTCCCHHH---HTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGG--GG---C--CCCCSC
T ss_pred eeeEecccccccccccc---cccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCccc--cc---c--ccCcCC
Confidence 34555556678987532 22334 8999999999999999999999999999999998721 11 1 234689
Q ss_pred EEEeechhhHHHHHhhCC
Q 014723 129 AVFVSKASGEKLKQYAGS 146 (419)
Q Consensus 129 sv~Is~~~G~~L~~~l~~ 146 (419)
+++|...+|+.|+.|+..
T Consensus 329 ~~~v~~~~g~~i~~yi~s 346 (649)
T 3i6s_A 329 GVVVNKKEGKQVINYVKN 346 (649)
T ss_dssp EEEECHHHHHHHHHHHHT
T ss_pred EEEEcHHHHHHHHHHHhc
Confidence 999999999999998865
No 79
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.72 E-value=6e-05 Score=84.27 Aligned_cols=75 Identities=28% Similarity=0.468 Sum_probs=59.8
Q ss_pred cCCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcceeeccCCCCceEEeEEEeechhhHH
Q 014723 60 DACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEK 139 (419)
Q Consensus 60 daC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~~m~g~~~~i~IPsv~Is~~~G~~ 139 (419)
++|.+... .+++|||||++||.|+|.+|+.+++++||.++|+||+..+.....+. ....||+++|+..+|..
T Consensus 269 ~g~~~~~~-----~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~---~~~~iP~~~i~~~~g~~ 340 (926)
T 1xf1_A 269 RGTKEDDF-----KDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELP---NVDQMPAAFISRKDGLL 340 (926)
T ss_dssp TSCSTTTT-----TTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECC---CSTTCCEEEECHHHHHH
T ss_pred CCCCccch-----hhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccC---ccccccEEEEeHHHHHH
Confidence 47764321 46799999999999999999999999999999999987654333322 23468999999999998
Q ss_pred HHH
Q 014723 140 LKQ 142 (419)
Q Consensus 140 L~~ 142 (419)
|+.
T Consensus 341 l~~ 343 (926)
T 1xf1_A 341 LKD 343 (926)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.54 E-value=3.4e-05 Score=73.02 Aligned_cols=50 Identities=24% Similarity=0.522 Sum_probs=39.8
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC-CCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~-~~~CP~Cr~~~~~~ 255 (419)
-..|.||.+-...+.... .|+|.||..|+++|++.+ ...||.|+......
T Consensus 180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 578999999998773332 399999999999999764 34799998875544
No 81
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.81 E-value=0.072 Score=42.68 Aligned_cols=49 Identities=24% Similarity=0.571 Sum_probs=37.4
Q ss_pred CCCccceecCcccCCCeeEEecC-CChhhHHhHHHHHhcCCCCCcccccccccCCC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPC-RHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 257 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC-~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~ 257 (419)
+-..|-.|+.+.+ + .+.| .|.+|..|+...|.. ...||+|++++.....
T Consensus 27 G~~nCKsCWf~~k-~----LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 27 GPQFCKSCWFENK-G----LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCCSSCSCCS-S----EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCSC
T ss_pred CcccChhhccccC-C----eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCccee
Confidence 4578999997753 1 2336 599999999998877 5569999999876643
No 82
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.03 E-value=0.079 Score=39.81 Aligned_cols=47 Identities=28% Similarity=0.467 Sum_probs=32.6
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcC---CCCCccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW---RTFCPVCKRDA 252 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~---~~~CP~Cr~~~ 252 (419)
.+..|.||.+. ++-+.--.|...||..|++..|... .-.||.|+...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 35779999853 3333333488999999999888652 22699997643
No 83
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.95 E-value=0.057 Score=43.35 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=25.8
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHH
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW 237 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~W 237 (419)
+..|.||++++...-...-+.|+|.||..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 5789999987533323334889999999999983
No 84
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=85.54 E-value=0.71 Score=49.08 Aligned_cols=71 Identities=10% Similarity=0.089 Sum_probs=52.3
Q ss_pred CCCCCccCccccCCCcceEEEEecCCCCHHHHHHHHHHcCCceEEEeecCCCcceeeccCCCCceEEeEEEeechhhHHH
Q 014723 61 ACSNLTSKVEKVSNMSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKL 140 (419)
Q Consensus 61 aC~pl~~~~~~~~~~~~~IaLV~RG~CsF~~Kv~nAq~aGA~avIv~nn~~~~~~~~m~g~~~~i~IPsv~Is~~~G~~L 140 (419)
.|.+... ....+.++|+|++|+ |..|..+++.+||.++|++++..+. .....+|.+.+...++..+
T Consensus 269 ~~~~~~~---~~~~v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~~~~--------~~~~~lP~~~v~~~~g~~i 334 (621)
T 3vta_A 269 FCTDKSV---NPNLLKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNTRDY--------ADSYPLPSSVLDPNDLLAT 334 (621)
T ss_dssp TTCTTCS---CGGGTTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSCCSS--------CCCCSSSEEEECHHHHHHH
T ss_pred ccccccc---ccccccceEEEEecC---CChhHHhhhhcceeEEEEEecCCCc--------ccccccceEEECHHHHHHH
Confidence 4555432 234568999998754 6689999999999999999886542 1223578999999999998
Q ss_pred HHhhC
Q 014723 141 KQYAG 145 (419)
Q Consensus 141 ~~~l~ 145 (419)
+.+..
T Consensus 335 ~~~~~ 339 (621)
T 3vta_A 335 LRYIY 339 (621)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=80.24 E-value=0.78 Score=35.98 Aligned_cols=31 Identities=23% Similarity=0.726 Sum_probs=22.6
Q ss_pred CCCccceecCcccCCCeeEEec---CCChhhHHhHHHH
Q 014723 203 TSRTCAICLEDYSVGEKLRILP---CRHKFHAFCVDSW 237 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~Lp---C~H~Fh~~Ci~~W 237 (419)
.++.|.||- .|... ..+| |+-+||..|+++-
T Consensus 14 ~D~~C~VC~-~~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-ccccc---ceeccccccccccHhhcccc
Confidence 478899995 33343 2344 7899999999996
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=78.20 E-value=3.6 Score=32.55 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=41.2
Q ss_pred CCccceecCcccCCC--eeEE--ecCCChhhHHhHHHHHhcCCCCCcccccccccCCCCCCC
Q 014723 204 SRTCAICLEDYSVGE--KLRI--LPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPA 261 (419)
Q Consensus 204 ~~~C~ICle~~~~~~--~~~~--LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~~~~p~~ 261 (419)
...|.||-|++.... ++-+ -.|.--.|+.|.+-=.+..+..||-|+..+-..++.|+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v 77 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRV 77 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCc
Confidence 578999999973321 1222 237778999999877777677799999988766655543
No 87
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=77.18 E-value=0.53 Score=34.60 Aligned_cols=49 Identities=29% Similarity=0.485 Sum_probs=32.5
Q ss_pred CCCccceecCcccCCCeeEE-ecCCChhhHHhHHHHHh----cCCCCCcccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDSWLT----SWRTFCPVCKRD 251 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~Ci~~Wl~----~~~~~CP~Cr~~ 251 (419)
+...|+||...+.+.+..+. -.|..-||..|+.--.. ...-.||.|+.+
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45789999988754433222 24788899999865332 134569999764
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.76 E-value=0.48 Score=36.00 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=32.4
Q ss_pred CCccceecCcccCCCeeEE-ecCCChhhHHhHHHHHhc---CCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDSWLTS---WRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~~~~ 254 (419)
...|.||..... ++..+. =-|.--||..|+..-+.. ..-.||.|+..+..
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 467999987643 322222 237788999999765532 23469999876543
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=75.05 E-value=1.1 Score=32.82 Aligned_cols=46 Identities=24% Similarity=0.671 Sum_probs=31.2
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCcccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 251 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~ 251 (419)
.+..|.||.+. ++-+.--.|...||..|+..-+.. ..-.||.|++.
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 46789999873 333332347788999999986543 23369999764
No 90
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.14 E-value=2.8 Score=32.52 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=28.2
Q ss_pred CCccceecCcccCCCeeEEec--CCChhhHHhHHHHHhc
Q 014723 204 SRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTS 240 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~Lp--C~H~Fh~~Ci~~Wl~~ 240 (419)
...|.+|.|.+++..-+. -| =.|+||..|-+..++.
T Consensus 15 ~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 468999999998875443 22 2699999999998865
No 91
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=70.34 E-value=0.54 Score=34.45 Aligned_cols=49 Identities=27% Similarity=0.566 Sum_probs=31.5
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCcccccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDAR 253 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~~~ 253 (419)
..+..|.||.+. ++-+.--.|...||..|+..-+.. ..-.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 346789999863 322222237788999999865543 1225999976543
No 92
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.65 E-value=1.9 Score=47.95 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=41.5
Q ss_pred CCCccceecCcccCCCeeEEecCC-ChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCR-HKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~-H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
+...|+|-++-|.++ +++|.| +.|-+.+|.+||.. ..+||+=|.++...
T Consensus 890 ~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcc
Confidence 457899999999988 889987 58999999999988 45699998877643
No 93
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.11 E-value=1.8 Score=32.82 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=30.0
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHH--------hcCCCCCccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL--------TSWRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl--------~~~~~~CP~Cr~~~ 252 (419)
...| ||......+.-+.---|..-||..|+.--. ....-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3567 898876543333323478889999985321 12355799997644
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=63.19 E-value=0.92 Score=41.31 Aligned_cols=47 Identities=28% Similarity=0.488 Sum_probs=30.8
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCcccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 251 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~ 251 (419)
..++.|.+|.+. ++-+.-=.|...||..|+.+.+.. ..-.||.|+..
T Consensus 5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 346789999854 221111127788999999887654 12359999764
No 95
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=61.65 E-value=1.4 Score=35.83 Aligned_cols=47 Identities=26% Similarity=0.599 Sum_probs=30.2
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCcccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCK 249 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr 249 (419)
.++.|.||.+.=...+-+.--.|...||..|+..++.. ..-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46889999876322222343458899999999887642 233466554
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.35 E-value=6.1 Score=32.22 Aligned_cols=46 Identities=24% Similarity=0.457 Sum_probs=28.4
Q ss_pred CCccceecCcc-----cCC-CeeEEecCCChhhHHhHHH------HHhcCCCCCcccc
Q 014723 204 SRTCAICLEDY-----SVG-EKLRILPCRHKFHAFCVDS------WLTSWRTFCPVCK 249 (419)
Q Consensus 204 ~~~C~ICle~~-----~~~-~~~~~LpC~H~Fh~~Ci~~------Wl~~~~~~CP~Cr 249 (419)
...|.+|+..= ..+ +-+.--.|+..||..|+.. .+....-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 56899998652 122 3333345899999999953 2333344577664
No 97
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.58 E-value=2.5 Score=29.35 Aligned_cols=45 Identities=24% Similarity=0.571 Sum_probs=27.6
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCccccc
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 250 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~ 250 (419)
.|.||.+.-..++-+.--.|...||..|+++=+.. ..-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888765322322332347889999999764433 1225999964
No 98
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=60.57 E-value=1.4 Score=39.29 Aligned_cols=45 Identities=31% Similarity=0.553 Sum_probs=30.8
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCcccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 251 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~ 251 (419)
++.|.+|.+. ++-+.-=.|.-.||..|+.+.+.. ..-.||.|+..
T Consensus 4 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 5789999854 442222237789999999877654 12359999764
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=60.56 E-value=0.95 Score=33.33 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=32.0
Q ss_pred CCCCccceecCcccC--CCeeEEecCCChhhHHhHHHHHh------cCCCCCcccccc
Q 014723 202 CTSRTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLT------SWRTFCPVCKRD 251 (419)
Q Consensus 202 ~~~~~C~ICle~~~~--~~~~~~LpC~H~Fh~~Ci~~Wl~------~~~~~CP~Cr~~ 251 (419)
..+..|.||.+.... ++-+.--.|.-.||..|+..-+. ...-.|+.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 346789999976533 22222223788999999986442 223469999654
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=60.30 E-value=6.5 Score=33.80 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=31.3
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHHh----------cCCCCCccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT----------SWRTFCPVCKR 250 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~----------~~~~~CP~Cr~ 250 (419)
..++.|.+|.+. |+-+.-=.|-..||..||.+=+. ...-.||+|+.
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346899999874 33332224888999999997652 22336999964
No 101
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=58.60 E-value=1.6 Score=39.15 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=32.0
Q ss_pred CCccceecCcccCCCe---eEE-ecCCChhhHHhHHHH------Hh----cCCCCCcccccc
Q 014723 204 SRTCAICLEDYSVGEK---LRI-LPCRHKFHAFCVDSW------LT----SWRTFCPVCKRD 251 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~---~~~-LpC~H~Fh~~Ci~~W------l~----~~~~~CP~Cr~~ 251 (419)
+..|+||...|.+++. .+. --|..-||..|+.-- +. ...-.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4579999999887752 222 237889999998431 11 013469999764
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=58.49 E-value=1.7 Score=32.12 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=31.3
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDA 252 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~~ 252 (419)
.+..|.||.+. ++-+.---|.-.||..|+.+-|.. ..-.||.|...-
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 46789999864 333333347889999999865543 222599997643
No 103
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.35 E-value=0.83 Score=32.71 Aligned_cols=45 Identities=27% Similarity=0.621 Sum_probs=29.8
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 250 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~ 250 (419)
.+..|.||.+. ++-+.--.|...||..|+.+-|.. ..-.||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 46789999874 333333347889999999865543 1224888854
No 104
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.88 E-value=3.9 Score=32.50 Aligned_cols=43 Identities=35% Similarity=0.828 Sum_probs=26.8
Q ss_pred CCCccceecCcccCCCeeEEecC-----C-ChhhHHhHHHHHhc---CCCCCccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPC-----R-HKFHAFCVDSWLTS---WRTFCPVCKRDA 252 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC-----~-H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~~ 252 (419)
....| ||.+... ++ .+-| . .-||..|+. |.. .+-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~---MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SC---CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CC---EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34567 9988642 32 3333 3 469999997 433 234699997644
No 105
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=50.79 E-value=1.2 Score=32.24 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=31.9
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCcccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~~~ 253 (419)
.+..|.||.+. ++-+.--.|.-.||..|+.+-+.. ..-.||.|.....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 35789999874 333333347889999999865543 2235999976554
No 106
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.16 E-value=4.4 Score=30.89 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCccceecCcccCCCeeEEe--cCCChhhHHhHHHHHhc--------CCCCCccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTS--------WRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~Ci~~Wl~~--------~~~~CP~Cr~~~ 252 (419)
...| ||......+.-+.-= -|..-||..|+.---.. .+-.||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4677 898875444333322 47788999999532111 244699997643
No 107
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=49.55 E-value=5.8 Score=29.85 Aligned_cols=43 Identities=35% Similarity=0.828 Sum_probs=27.0
Q ss_pred CCCccceecCcccCCCeeEEec-----CC-ChhhHHhHHHHHhc---CCCCCccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILP-----CR-HKFHAFCVDSWLTS---WRTFCPVCKRDA 252 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~Lp-----C~-H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~~ 252 (419)
....| ||.+... ++ .+- |. .-||..|+. |.. ..-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34667 8987642 32 333 44 479999997 433 233699997643
No 108
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=48.35 E-value=4.6 Score=31.88 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=30.5
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 250 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~ 250 (419)
.+..|.+|.+. ++-+.--.|.-.||..|+.+=|.. ..-.||.|+.
T Consensus 24 n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 46789999964 333332237778999999876644 1225999975
No 109
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.07 E-value=10 Score=28.86 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=29.6
Q ss_pred CCccceecCcccCCC-eeEEecCCChhhHHhHHHHHh----cCCCCCccccccc
Q 014723 204 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLT----SWRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~~-~~~~LpC~H~Fh~~Ci~~Wl~----~~~~~CP~Cr~~~ 252 (419)
...| ||...+.... -+.---|..-||..|+.--.. ...-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4566 8988774332 222223788899999953221 1344699997643
No 110
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=48.03 E-value=9.7 Score=28.07 Aligned_cols=34 Identities=21% Similarity=0.571 Sum_probs=23.9
Q ss_pred CCCccceecCcccCCCeeEEe--cCCChhhHHhHHH
Q 014723 203 TSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDS 236 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~Ci~~ 236 (419)
....|.+|...+.+.+..+.- .|.--||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 357899999998766544433 4778899999843
No 111
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=47.10 E-value=2.4 Score=38.04 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=30.1
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCcccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 251 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~ 251 (419)
++.|.+|.+. ++-+.--.|...||..|+.+=+.. ..-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999854 333333347788999999765543 22359999765
No 112
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.81 E-value=3.1 Score=32.62 Aligned_cols=50 Identities=18% Similarity=0.488 Sum_probs=32.4
Q ss_pred CCccceecCcccCCCeeEEe--cCCChhhHHhHHHHHhc-------CCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTS-------WRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~Ci~~Wl~~-------~~~~CP~Cr~~~~ 253 (419)
+..|.||.+.-...+...++ -|...||..|+.+-|.. ..-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 57899999763322222222 37889999999876541 2336999976553
No 113
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=46.65 E-value=11 Score=37.28 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=31.0
Q ss_pred CccceecCcccCCCeeEEecCCCh--hhHHhHHHHHh-cCCCCCcccccccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHK--FHAFCVDSWLT-SWRTFCPVCKRDAR 253 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~--Fh~~Ci~~Wl~-~~~~~CP~Cr~~~~ 253 (419)
..|+|-+..|..+ ++-..|.|. |-..=+-.... ...-.||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 5688887777655 888889998 55433322222 23446999988763
No 114
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=46.01 E-value=4.1 Score=35.62 Aligned_cols=47 Identities=21% Similarity=0.452 Sum_probs=29.6
Q ss_pred CCccceecCcccCCCe-eEEecCCChhhHHhHHHHHh----cCCCCCcccccc
Q 014723 204 SRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLT----SWRTFCPVCKRD 251 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~Ci~~Wl~----~~~~~CP~Cr~~ 251 (419)
...| +|......+.. +.-=-|..-||..|+.--.. ...-.||.|+..
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 5678 99987643332 22223788899999953211 224469999764
No 115
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=44.68 E-value=4.7 Score=28.26 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=27.4
Q ss_pred ccceecCcccCCCeeEEe--cCCChhhHHhHHHHH---hcCCCCCcccc
Q 014723 206 TCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWL---TSWRTFCPVCK 249 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~L--pC~H~Fh~~Ci~~Wl---~~~~~~CP~Cr 249 (419)
.|.+|...+.+++..+.- .|.--||..|+.--. ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888887655433332 367679999985322 12455699885
No 116
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=43.70 E-value=19 Score=30.29 Aligned_cols=47 Identities=23% Similarity=0.515 Sum_probs=29.6
Q ss_pred CCCCccceecCcccCCCeeEEecCCChhhHHhHHHHH------h----cCCCCCcccccc
Q 014723 202 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL------T----SWRTFCPVCKRD 251 (419)
Q Consensus 202 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl------~----~~~~~CP~Cr~~ 251 (419)
..++.|.||.+. ++-+--=.|-..||.+||..-+ + ...=.|++|+-+
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 346789999864 2211111377899999999752 1 122369999543
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.07 E-value=5 Score=32.88 Aligned_cols=45 Identities=27% Similarity=0.561 Sum_probs=27.1
Q ss_pred CccceecCccc----CC---CeeEEecCCChhhHHhHHHHH------hcCCCCCcccc
Q 014723 205 RTCAICLEDYS----VG---EKLRILPCRHKFHAFCVDSWL------TSWRTFCPVCK 249 (419)
Q Consensus 205 ~~C~ICle~~~----~~---~~~~~LpC~H~Fh~~Ci~~Wl------~~~~~~CP~Cr 249 (419)
+.|.||+..-. .+ +-+.--.|...||..|+..+. ....-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 56999986531 11 223334488999999997642 22333466663
No 118
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=41.87 E-value=15 Score=36.34 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=31.3
Q ss_pred CccceecCcccCCCeeEEecCCCh--hhHHhHHHHHh-cCCCCCcccccccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHK--FHAFCVDSWLT-SWRTFCPVCKRDAR 253 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~--Fh~~Ci~~Wl~-~~~~~CP~Cr~~~~ 253 (419)
..|+|-...|..+ ++-..|.|. |-..=+-.... ...-.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4688888777655 788889998 55433333222 23346999988764
No 119
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=40.38 E-value=5.2 Score=31.98 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=28.4
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhc--CCCCCccccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKR 250 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~--~~~~CP~Cr~ 250 (419)
..| ||......+.-+.-=.|.--||..|+..=+.. ..-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 88776555543333347888999999753322 1236999963
No 120
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=40.19 E-value=5.3 Score=36.98 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=25.8
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---C-CCCCccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---W-RTFCPVCKR 250 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~-~~~CP~Cr~ 250 (419)
+..|.+|.+.=..++-+.-=-|...||..|+++=|.. . .=.||.|+.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3468888764222222222237889999999965543 1 225999965
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.64 E-value=5.2 Score=32.66 Aligned_cols=46 Identities=28% Similarity=0.544 Sum_probs=28.7
Q ss_pred CccceecCcccC-CCeeEEecCCChhhHHhHHHHHhc---CCCCCccccc
Q 014723 205 RTCAICLEDYSV-GEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR 250 (419)
Q Consensus 205 ~~C~ICle~~~~-~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~ 250 (419)
..|.||.+.-.+ ++-+.--.|...||..|+++-|.. ..-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 468888864222 222222238899999999876543 1225999975
No 122
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.43 E-value=3.2 Score=31.12 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=29.4
Q ss_pred CCccceecCcccCCCeeEE-ecCCChhhHHhHHHHHh---cCCCCCccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRI-LPCRHKFHAFCVDSWLT---SWRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~Ci~~Wl~---~~~~~CP~Cr~~~ 252 (419)
...| ||.....+++..+. -.|..-||..|+.--.. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 3568 79877655532222 23777899999864321 1234699997643
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.52 E-value=10 Score=28.06 Aligned_cols=40 Identities=23% Similarity=0.587 Sum_probs=29.3
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|..|-+.+..++.+.. -+..||.+|. .|-.|++.+..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a--~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS--LGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE--TTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE--CCeEeeCCCC---------CCCCCCCccCC
Confidence 4679999999887765543 4678898873 58888877653
No 124
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=37.90 E-value=11 Score=30.25 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=11.2
Q ss_pred hhhHHhHHHHHhc
Q 014723 228 KFHAFCVDSWLTS 240 (419)
Q Consensus 228 ~Fh~~Ci~~Wl~~ 240 (419)
-||+.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999954
No 125
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.88 E-value=13 Score=27.42 Aligned_cols=42 Identities=24% Similarity=0.504 Sum_probs=28.9
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
....|.-|.+.+...+.+... -+..||..|. .|-.|++.+..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS-NGELYHEQCF---------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE-TTEEECTTTC---------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe-CccEeccccC---------eECCCCCCCCC
Confidence 357899999988765544333 4667888773 48888776654
No 126
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=37.41 E-value=12 Score=30.13 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=11.2
Q ss_pred hhhHHhHHHHHhc
Q 014723 228 KFHAFCVDSWLTS 240 (419)
Q Consensus 228 ~Fh~~Ci~~Wl~~ 240 (419)
-||+.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999953
No 127
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.68 E-value=9.6 Score=28.78 Aligned_cols=39 Identities=28% Similarity=0.586 Sum_probs=29.2
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
...|.-|-+.+..++.+..+ +..||.+|+ .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF---------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLAL--DKQWHVSCF---------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEET--TEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEEC--CcccccccC---------CcCcCCCCcC
Confidence 46799999998877665543 677898873 5888887764
No 128
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.19 E-value=6.6 Score=30.01 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=29.0
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---C-CCCCccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---W-RTFCPVCKR 250 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~-~~~CP~Cr~ 250 (419)
+..|.||...-..++-+.-=-|...||..|+++=|.. . .=.||.|..
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 4478889864323332222247889999999865533 1 225999864
No 129
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.04 E-value=16 Score=26.47 Aligned_cols=40 Identities=23% Similarity=0.499 Sum_probs=25.9
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
...|.-|-+.+...+.+.. .-+..||..|. .|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE-YGGQTWHEHCF---------LCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC-STTCCEETTTC---------BCTTTCCBTT
T ss_pred CCCCccCCCccccCccEEE-ECccccCcccC---------eECCCCCcCC
Confidence 4578888888776443332 25677887773 4777777664
No 130
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.99 E-value=16 Score=26.50 Aligned_cols=39 Identities=18% Similarity=0.456 Sum_probs=25.4
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
..|..|-+.+...+.+... -+..||.+|. .|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY-KGSSWHETCF---------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE-TTEEEETTTT---------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE-CcCeecccCC---------cccccCCccC
Confidence 5688888887765443332 4667887773 4777776654
No 131
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=35.88 E-value=7.7 Score=28.70 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=20.8
Q ss_pred CCccceecCcccCCCeeEEecCCChhhH-HhHHHHHhcCCCCCcccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHA-FCVDSWLTSWRTFCPVCK 249 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~-~Ci~~Wl~~~~~~CP~Cr 249 (419)
-..|..|...+..+.- .. .=+..||. .|..+-+ ...|-.|.
T Consensus 27 CF~C~~C~~~L~~~~~-~~-~~g~~yC~~~cy~~~f---~~~C~~C~ 68 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGH-AE-HEGKPYCNHPCYSAMF---GPKGFGRG 68 (76)
T ss_dssp TCBCTTTCCBCCTTTE-EE-ETTEEEETTTHHHHHS---SCCCSSCC
T ss_pred CCCccccCccCCCCce-EC-cCCeEeeCHHHHHHHh---CccCCCcC
Confidence 4677777776655421 11 13445665 3654432 33466664
No 132
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.52 E-value=2.7 Score=33.28 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=30.7
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCcccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 251 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~ 251 (419)
++..|.||.+.-...+-+.-=-|...||..|+.+=|.. ..-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 35689999876322222222238889999999854432 12259999764
No 133
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.58 E-value=10 Score=28.63 Aligned_cols=40 Identities=33% Similarity=0.605 Sum_probs=29.4
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|..|-+.+...+.+.. -+..||..|+ .|-.|++.+..
T Consensus 15 ~~~C~~C~~~I~~~e~v~a--~~~~wH~~CF---------~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCV--NGHFFHRSCF---------RCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCB--TTBCCBTTTC---------BCSSSCCBCCT
T ss_pred CCCCcccCCCcccceEEEE--CCCeeCCCcC---------EEcCCCCCcCC
Confidence 4789999999877665542 4678998884 58888777654
No 134
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.52 E-value=21 Score=27.84 Aligned_cols=51 Identities=18% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCCccceecCcccCCCeeEEe--cCCChhhHHhHHHHHh-cCCCCCcccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLT-SWRTFCPVCKRDAR 253 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~Ci~~Wl~-~~~~~CP~Cr~~~~ 253 (419)
.+..|.||.+.-...+...++ -|.-.||..|+..-+. ...-.||.|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 467899999753212111222 2677899999975431 12335999976443
No 135
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=33.44 E-value=12 Score=31.69 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=24.4
Q ss_pred CCCccceecCccc--CCCeeEEecCCChhhHHhHH
Q 014723 203 TSRTCAICLEDYS--VGEKLRILPCRHKFHAFCVD 235 (419)
Q Consensus 203 ~~~~C~ICle~~~--~~~~~~~LpC~H~Fh~~Ci~ 235 (419)
++..|.+|...|. .+....-.-|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4689999999984 23344445699999999854
No 136
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=33.12 E-value=5.7 Score=29.60 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=28.3
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhc--CCCCCccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKR 250 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~--~~~~CP~Cr~ 250 (419)
+...| ||......+.-+.---|..-||..|+.--... ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 35678 99877643222332337888999998642211 2345888864
No 137
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.27 E-value=15 Score=27.34 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=24.0
Q ss_pred CCCccceecCcccCCCeeEEecC-CChhhHHhHHHH
Q 014723 203 TSRTCAICLEDYSVGEKLRILPC-RHKFHAFCVDSW 237 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC-~H~Fh~~Ci~~W 237 (419)
+..-|.||.++ -.++-+.| +-.||..|.++-
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 35789999998 34788889 778999886653
No 138
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=31.74 E-value=16 Score=26.59 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=27.4
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccc
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 248 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~C 248 (419)
..|-.|+..|.+....+--.|++.||.+| +..+...--.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999998885432222334899999999 44443222249988
No 139
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.41 E-value=18 Score=27.70 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=24.3
Q ss_pred CCccceecCcccCCCeeE-EecCCChhhHHhHHHH
Q 014723 204 SRTCAICLEDYSVGEKLR-ILPCRHKFHAFCVDSW 237 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~-~LpC~H~Fh~~Ci~~W 237 (419)
...|.+|...|..-..-. ---||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 468999999997653222 2239999999997653
No 140
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=30.47 E-value=4.9 Score=30.82 Aligned_cols=45 Identities=29% Similarity=0.691 Sum_probs=26.1
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CC-CCCccccc
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WR-TFCPVCKR 250 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~-~~CP~Cr~ 250 (419)
.|.||.+.-..++-+.-=-|...||..|+.+-|.. .. =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 56677654322222221237788999999876643 11 35999975
No 141
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.83 E-value=21 Score=26.61 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=28.1
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|..|-+.+..++.+... =+..||.+|. .|-.|++.+..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY-KGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC-SSCEEETTTC---------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE-CccccccccC---------chhhCCCccCC
Confidence 35789999888766554332 4677888774 48888776643
No 142
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=29.39 E-value=21 Score=28.96 Aligned_cols=42 Identities=26% Similarity=0.601 Sum_probs=26.0
Q ss_pred CCCccceecCcccCCCeeEEe---cCCChhhHHhHHHHHhc---CCCCCccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRIL---PCRHKFHAFCVDSWLTS---WRTFCPVCKR 250 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~L---pC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~ 250 (419)
.++.|.+|.+. + ++..= .|...||..|+. |.. ..-.||.|+-
T Consensus 14 ~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 14 HEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp SCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred CCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 46789999842 3 22222 266789999997 443 1224886653
No 143
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=28.94 E-value=20 Score=28.88 Aligned_cols=49 Identities=18% Similarity=0.372 Sum_probs=31.8
Q ss_pred CCccceecCcccCCCeeEEe--cCCChhhHHhHHHHH---h------cCCCCCccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWL---T------SWRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~Ci~~Wl---~------~~~~~CP~Cr~~~ 252 (419)
...|.||...+.+....+.- .|..-||..|+.--- + ...-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46799999998655443333 367779999985321 0 1234699998753
No 144
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.58 E-value=22 Score=25.66 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=21.0
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~ 252 (419)
...|..|-+.+...+.+... =+..||..|. .|-.|++.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a-~~~~~H~~CF---------~C~~C~~~L 43 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA-LDRVFHVGCF---------VCSTCRAQL 43 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC-SSSEECTTTC---------BCSSSCCBC
T ss_pred CCCCccCCCccCCCceEEEE-CCCeEcccCC---------cccccCCcC
Confidence 35677777666543322221 3556676663 366666655
No 145
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=27.81 E-value=7.7 Score=28.99 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=26.1
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---C-CCCCccccc
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---W-RTFCPVCKR 250 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~-~~~CP~Cr~ 250 (419)
.|.||...-..++-+.-=.|...||..|+++=|.. . .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56677653222222221137789999999865543 1 235999965
No 146
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.55 E-value=34 Score=29.82 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=30.1
Q ss_pred CCCCCccceecCcccCCCeeEEe---cCCChhhHHhHHHHHhc---------CCCCCcccc
Q 014723 201 NCTSRTCAICLEDYSVGEKLRIL---PCRHKFHAFCVDSWLTS---------WRTFCPVCK 249 (419)
Q Consensus 201 ~~~~~~C~ICle~~~~~~~~~~L---pC~H~Fh~~Ci~~Wl~~---------~~~~CP~Cr 249 (419)
...+..|.||-+. ..+..- .|...||.+||+.++.. ..=.|=+|.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 3346889999864 333332 37789999999999833 122488884
No 147
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.27 E-value=22 Score=25.39 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=30.2
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccccC
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 255 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~~ 255 (419)
...|.-|.+.+...+.+... =+..||..|. .|-.|++.+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~-~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS-NGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE-TTEEEETTTS---------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe-CcCeeCcCCC---------cccCCCCCCCCC
Confidence 46899999998877655433 4667898884 488888776543
No 148
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=26.62 E-value=7.5 Score=28.06 Aligned_cols=43 Identities=37% Similarity=0.750 Sum_probs=25.0
Q ss_pred CCccceecCcccCCCeeEEec--CC-ChhhHHhHHHHHhc---CCCCCccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKR 250 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~Lp--C~-H~Fh~~Ci~~Wl~~---~~~~CP~Cr~ 250 (419)
...| ||.+.. .++-+.-=- |. .-||..|+. |.. .+-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4566 898764 232111112 44 479999997 433 2335999965
No 149
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.36 E-value=29 Score=26.39 Aligned_cols=40 Identities=15% Similarity=0.298 Sum_probs=27.8
Q ss_pred CCCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 203 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 203 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
....|.-|-+.+.. +.+ ..-+..||.+|+ .|-.|++.+..
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KARDKYRHPECF---------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ESSSCEECTTTC---------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEE--EECCceECccCC---------EecCCCCCCCC
Confidence 34679999988875 332 235678998884 48888877653
No 150
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=25.76 E-value=7.7 Score=28.05 Aligned_cols=40 Identities=35% Similarity=0.838 Sum_probs=24.6
Q ss_pred CCccceecCcccCCCeeEEecCC------ChhhHHhHHHHHhc---CCCCCccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCR------HKFHAFCVDSWLTS---WRTFCPVCKR 250 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~------H~Fh~~Ci~~Wl~~---~~~~CP~Cr~ 250 (419)
...| ||.+.. .+ ..+-|. .-||..|+. |.. ..-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CC---CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4556 898763 23 233343 469999997 433 2335999964
No 151
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.58 E-value=27 Score=27.19 Aligned_cols=51 Identities=16% Similarity=0.404 Sum_probs=33.1
Q ss_pred CCccceecCcccCCCe-eEEecCCChhhHHhHHHHHhc-----CCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~Ci~~Wl~~-----~~~~CP~Cr~~~~~ 254 (419)
...|.+|...|..-.. ..--.||++||..|...+... ....|-.|-..+..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 4679999999975532 222349999999998765421 11237777655543
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.00 E-value=26 Score=25.35 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=27.0
Q ss_pred CCccceecCcccC--CCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~--~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
...|.-|-+.+.. .+.+... -+..||.+|. .|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a-~~~~wH~~CF---------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF-EERQWHNDCF---------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC-SSCEECTTTC---------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEE-CCcccCcccC---------EeccCCCcCC
Confidence 4678889888875 2233322 5778888874 5888887764
No 153
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=23.22 E-value=33 Score=26.22 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=24.8
Q ss_pred CCccceecCcccCCCeeE-EecCCChhhHHhHHHH
Q 014723 204 SRTCAICLEDYSVGEKLR-ILPCRHKFHAFCVDSW 237 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~-~LpC~H~Fh~~Ci~~W 237 (419)
...|.+|...|..-..-. ---||.+||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 578999999997653222 2239999999997654
No 154
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.98 E-value=18 Score=35.94 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCccceecCcccCCC-eeEEecCCChhhHHhHHHHHhc------CCCCCccccccc
Q 014723 204 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTS------WRTFCPVCKRDA 252 (419)
Q Consensus 204 ~~~C~ICle~~~~~~-~~~~LpC~H~Fh~~Ci~~Wl~~------~~~~CP~Cr~~~ 252 (419)
...|.+|...|..-. +...-.||++||..|-..++.. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 468999999986542 1222349999999999876521 122377775544
No 155
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.88 E-value=29 Score=25.46 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=27.1
Q ss_pred CCccceecCcccC--CCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSV--GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~--~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
...|..|-+.+.. .++... .-+..||.+|. .|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~-a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC-FQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE-ETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEE-ECCcccCcccC---------ChhhCCCcCC
Confidence 3579999988875 223322 25678998884 5888877764
No 156
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.56 E-value=15 Score=22.74 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=17.9
Q ss_pred CccceecCcccCCCeeEEecCCChhhHHh
Q 014723 205 RTCAICLEDYSVGEKLRILPCRHKFHAFC 233 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~C 233 (419)
..|+.|-..+-..|++.. =+..||+.|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~--~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC--LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS--SSSCCCGGG
T ss_pred CcCCccCCEEecceeEEE--CCeEecccC
Confidence 468888877765554442 356788877
No 157
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=22.48 E-value=33 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=22.7
Q ss_pred CccceecCcccCCCeeE-EecCCChhhHHhHHH
Q 014723 205 RTCAICLEDYSVGEKLR-ILPCRHKFHAFCVDS 236 (419)
Q Consensus 205 ~~C~ICle~~~~~~~~~-~LpC~H~Fh~~Ci~~ 236 (419)
..|.+|...|..-..-. ---||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 58999999997543212 223999999999654
No 158
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=22.36 E-value=19 Score=26.76 Aligned_cols=39 Identities=23% Similarity=0.631 Sum_probs=24.6
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
...|..|-+.+..++.+.. -+..||.+|. .|-.|++.+.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 45 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC--DGRSFHRCCF---------LCMVCRKNLD 45 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE--TTEEEESSSE---------ECSSSCCEEC
T ss_pred CCcCcCcCccccCceeEEe--CCcccccccC---------ccCCCCCCCC
Confidence 3568888888766654432 4667777763 3777766654
No 159
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.34 E-value=35 Score=25.92 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=27.6
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|.-|-+.+. ++.+. .-+..||.+|+ .|-.|++.+..
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--ALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--ETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEE--ECCccccccCC---------ccCCCCCCCCC
Confidence 578999999885 33333 35788998884 58888877753
No 160
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.31 E-value=8.9 Score=30.97 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=27.9
Q ss_pred ccceecCcccCCCeeEEecCCChhhHHhHHHHHhc---CCCCCcccccc
Q 014723 206 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD 251 (419)
Q Consensus 206 ~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~---~~~~CP~Cr~~ 251 (419)
.|.+|.+.-...+.+.--.|...||..|+++=+.. ..-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777765332222333347889999999865543 22359988653
No 161
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.76 E-value=7.8 Score=32.30 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=29.7
Q ss_pred CCccceecCcccCCC-eeEEecCCChhhHHhHHHHHhcCCCCCcccccc
Q 014723 204 SRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 251 (419)
Q Consensus 204 ~~~C~ICle~~~~~~-~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~ 251 (419)
...|..|...|..-. +-.--.||.+||..|....... ...|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHH
Confidence 468999999996542 2222349999999997766544 2348888543
No 162
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.58 E-value=27 Score=28.67 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=29.3
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
...|.-|-+.+.....+.. -+..||..|+ .|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF---------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA--MDSYWHSRCL---------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE--TTEEEETTTS---------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe--CCcEEccccc---------CcCcCCCccc
Confidence 4689999999876543333 5778999884 5999988875
No 163
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.53 E-value=35 Score=24.46 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=23.1
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|..|-+.+.. +.+.. -+..||.+|+ .|-.|++.+..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA--MNNSWHPECF---------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE--TTEEECTTTS---------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE--CcccccccCC---------EeCCCCCcCCC
Confidence 3567778777653 33222 3566777763 47777666543
No 164
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.28 E-value=62 Score=26.09 Aligned_cols=48 Identities=6% Similarity=-0.075 Sum_probs=29.4
Q ss_pred CccceecCcccC-CCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 205 RTCAICLEDYSV-GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 205 ~~C~ICle~~~~-~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
..|..|...+.+ +.... ..=+..||..|..+-+.. +..|-.|.+.|..
T Consensus 33 F~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFGN-SGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHCC-CCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcCC-CCccccCCCCcCc
Confidence 578888777752 21121 123556888887775543 2259999887764
No 165
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.10 E-value=29 Score=31.75 Aligned_cols=35 Identities=17% Similarity=0.451 Sum_probs=25.2
Q ss_pred CCccceecCcccCCCe-eEEecCCChhhHHhHHHHH
Q 014723 204 SRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWL 238 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~Ci~~Wl 238 (419)
+..|.+|...|..-.. ..---||++||..|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 4689999999976532 2222499999999976543
No 166
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.91 E-value=55 Score=24.31 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=30.0
Q ss_pred CCCccceecCcc-cCCCeeEE-ecCCChhhHHhHHHHHh-cCCCCCcccccc
Q 014723 203 TSRTCAICLEDY-SVGEKLRI-LPCRHKFHAFCVDSWLT-SWRTFCPVCKRD 251 (419)
Q Consensus 203 ~~~~C~ICle~~-~~~~~~~~-LpC~H~Fh~~Ci~~Wl~-~~~~~CP~Cr~~ 251 (419)
.+..|.||.+.- .+.+.+.. =.|.-.||..|+..-.. ...-.||.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 467899998753 12222222 23778999999975321 123359999653
No 167
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=20.83 E-value=5.7 Score=30.43 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=12.2
Q ss_pred cCCChhhHHhHHHH
Q 014723 224 PCRHKFHAFCVDSW 237 (419)
Q Consensus 224 pC~H~Fh~~Ci~~W 237 (419)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 48999999998887
No 168
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.77 E-value=28 Score=31.47 Aligned_cols=34 Identities=18% Similarity=0.483 Sum_probs=24.1
Q ss_pred CCccceecCcccCCCee-EEecCCChhhHHhHHHH
Q 014723 204 SRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSW 237 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~-~~LpC~H~Fh~~Ci~~W 237 (419)
+..|.+|...|..-..- .---||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47899999999754322 22249999999996543
No 169
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.54 E-value=39 Score=25.79 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=23.0
Q ss_pred CCccceecCcccCCCe-eEEecCCChhhHHhHHH
Q 014723 204 SRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDS 236 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~Ci~~ 236 (419)
...|.+|...|..-.. -.---||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4689999999965432 12223999999998543
No 170
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.52 E-value=33 Score=28.46 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=23.5
Q ss_pred CCccceecCcccCCCe-eEEecCCChhhHHhHHH
Q 014723 204 SRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDS 236 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~Ci~~ 236 (419)
...|.+|...|..-.. ..---||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4689999999975432 22224999999999654
No 171
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.50 E-value=36 Score=25.91 Aligned_cols=40 Identities=25% Similarity=0.509 Sum_probs=25.9
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCccccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 254 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~~ 254 (419)
...|.-|-+.+...+.+. .-+..||..|. .|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--ANQQVFHISCF---------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--CSSSEEETTTC---------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE--ECCCEECCCCC---------eeCCCCCCCCC
Confidence 457888888877665442 35667887773 46677666543
No 172
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=20.27 E-value=12 Score=27.24 Aligned_cols=43 Identities=33% Similarity=0.681 Sum_probs=24.7
Q ss_pred CCccceecCcccCCCeeEEec--CC-ChhhHHhHHHHHhc---CCCCCccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILP--CR-HKFHAFCVDSWLTS---WRTFCPVCKR 250 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~Lp--C~-H~Fh~~Ci~~Wl~~---~~~~CP~Cr~ 250 (419)
...| ||.+.. .++-+.-=- |. .-||..|+. |.. .+-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4566 898763 342111112 33 679999997 332 2335999965
No 173
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=20.27 E-value=22 Score=29.03 Aligned_cols=35 Identities=20% Similarity=0.482 Sum_probs=18.3
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHh
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT 239 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~ 239 (419)
...|..|...+..++..... =+..||..|..+.+.
T Consensus 36 CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWTK 70 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHHH
T ss_pred cCccccCCCCCCCCCcEEee-CCEEEcHHHhHHHhc
Confidence 35666666666444333222 345566666655554
No 174
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.13 E-value=30 Score=25.76 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=24.9
Q ss_pred CCccceecCcccCCCeeEEecCCChhhHHhHHHHHhcCCCCCcccccccc
Q 014723 204 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 253 (419)
Q Consensus 204 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~Ci~~Wl~~~~~~CP~Cr~~~~ 253 (419)
...|.-|-+.+. ++.+. --+..||.+|. .|-.|++.+.
T Consensus 15 ~~~C~~C~~~I~-~~~v~--a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI--FKNDPYHPDHF---------NCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC--CSSSCCCTTTS---------BCSSSCCBCC
T ss_pred CCCCccCCCEec-ceEEE--ECcceeCCCCC---------EeCCCCCccC
Confidence 467888888876 33322 24667887773 4778877665
Done!