BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014726
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 143/308 (46%), Gaps = 48/308 (15%)
Query: 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLG 135
SN + L + + G +PS L L KL DL L N+L G IP E+ + ++ L L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 136 INNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEF 195
N+ TG +P+ L N T L + G +PK +G+L +L L + ++ +G+IP E
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 196 ANLKSLRILWASDNLFTGKIPE-FFGTLTELA-------------------DLRLQGTLL 235
+ +SL L + NLF G IP F ++A + G LL
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 236 EGPIPRSFRALNKLEDLRIGDLSAE------------DSTLDFLE--------------- 268
E RS LN+L ++++ + ++ FL+
Sbjct: 595 EFQGIRS-EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 269 SQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGN 328
S L IL+L + +SG IPD++G L +LDLS NKL G+IP ++ L+ L + L N
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 329 NNLSGELP 336
NNLSG +P
Sbjct: 714 NNLSGPIP 721
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 23/291 (7%)
Query: 93 GELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTK 152
G++P L +L+ L+L N L+G+IP+ +G LS ++ L L +N G +P EL +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 153 LISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFT 212
L +L G +P L T+L + + ++ +TG IP+ L++L IL S+N F+
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 213 GKIPEFFGTLTELADLRLQGTLLEGPIPRS-----------FRALNKLEDLRIGDLSAE- 260
G IP G L L L L G IP + F A + ++ + E
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 261 DSTLDFLESQ----KSLSILSLRN-CRVS-----GKIPDQLGTFAKLQLLDLSFNKLTGQ 310
+ LE Q + L+ LS RN C ++ G + LD+S+N L+G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 311 IPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPR 360
IP + + L L LG+N++SG +P + L LD+S N L G +P+
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 139/341 (40%), Gaps = 84/341 (24%)
Query: 73 DCTSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYL 132
DC++ + HL I + G+ + +L LN+ N G IP L ++QYL
Sbjct: 221 DCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274
Query: 133 SLGINNFTGRVPTEL-GNLTKLISLXXXXXXXXGPLPKELG------------------- 172
SL N FTG +P L G L L G +P G
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 173 ------KLTSLQQLYIDSSGVTGSIPQEFANLKS-------------------------- 200
K+ L+ L + + +G +P+ NL +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 201 -LRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259
L+ L+ +N FTGKIP +EL L L L G IP S +L+KL DL++
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL----- 449
Query: 260 EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319
L+ LE G+IP +L L+ L L FN LTG+IP+ L + +
Sbjct: 450 ---WLNMLE----------------GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 320 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLP 359
L ++ L NN L+GE+P I NL L +S N SGN+P
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 109/263 (41%), Gaps = 54/263 (20%)
Query: 90 DIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 149
D+ GE+PS L L ++L N L G IP IG+L N+ L L N+F+G +P ELG+
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 150 LTKLISLXXXXXXXXGPLP----KELGKLTS-----LQQLYIDSSGVT------------ 188
LI L G +P K+ GK+ + + +YI + G+
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 189 -------------------------GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 223
G F N S+ L S N+ +G IP+ G++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 224 ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILS---LRN 280
L L L + G IP + L L I DLS+ ++ +L++L+ L N
Sbjct: 657 YLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 281 CRVSGKIPD--QLGTFAKLQLLD 301
+SG IP+ Q TF + L+
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLN 736
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 136/295 (46%), Gaps = 32/295 (10%)
Query: 105 LMDLNLGQNVLNGSIPA--EIGQLSNMQYLSLGIN--NFTGRVPTELGNLTKLISLXXXX 160
L L+L +N L+G + +G S +++L++ N +F G+V L L L L
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 161 XXXXGPLPKELGKLTS-----LQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKI 215
G +G + S L+ L I + ++G + + + +L L S N F+ I
Sbjct: 161 NSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 216
Query: 216 PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLES-----Q 270
P F G + L L + G L G R+ +L+ L I S+ F+
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-------SSNQFVGPIPPLPL 268
Query: 271 KSLSILSLRNCRVSGKIPDQL-GTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
KSL LSL + +G+IPD L G L LDLS N G +P S L+ L L +N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 330 NLSGELPVNIIAP--NLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQ 382
N SGELP++ + L LD+S+N SG LP + LS +++ +++NN
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFS 381
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 75 TSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSL 134
T N C+IT ++Y G +M L++ N+L+G IP EIG + + L+L
Sbjct: 609 TRNPCNITS-RVYG----GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 135 GINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQ 193
G N+ +G +P E+G+L L L G +P+ + LT L ++ + ++ ++G IP+
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 3/155 (1%)
Query: 89 LDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELG 148
L+ G +L L N+ V G +M +L + N +G +P E+G
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 149 NLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASD 208
++ L L G +P E+G L L L + S+ + G IPQ + L L + S+
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 209 NLFTGKIPEF--FGTLTELADLRLQGTLLEGPIPR 241
N +G IPE F T L G L P+PR
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLNNPG-LCGYPLPR 747
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 278 LRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP--TSLQDLSTLQYLYLGNNNLS--G 333
L N ++G + A L LDLS N L+G + TSL S L++L + +N L G
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 334 ELPVNIIAPNLIALDVSYNPLSG 356
++ + +L LD+S N +SG
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISG 165
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 143/308 (46%), Gaps = 48/308 (15%)
Query: 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLG 135
SN + L + + G +PS L L KL DL L N+L G IP E+ + ++ L L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 136 INNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEF 195
N+ TG +P+ L N T L + G +PK +G+L +L L + ++ +G+IP E
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 196 ANLKSLRILWASDNLFTGKIPE-FFGTLTELA-------------------DLRLQGTLL 235
+ +SL L + NLF G IP F ++A + G LL
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 236 EGPIPRSFRALNKLEDLRIGDLSAE------------DSTLDFLE--------------- 268
E RS LN+L ++++ + ++ FL+
Sbjct: 592 EFQGIRS-EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 269 SQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGN 328
S L IL+L + +SG IPD++G L +LDLS NKL G+IP ++ L+ L + L N
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 329 NNLSGELP 336
NNLSG +P
Sbjct: 711 NNLSGPIP 718
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 23/291 (7%)
Query: 93 GELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTK 152
G++P L +L+ L+L N L+G+IP+ +G LS ++ L L +N G +P EL +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 153 LISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFT 212
L +L G +P L T+L + + ++ +TG IP+ L++L IL S+N F+
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 213 GKIPEFFGTLTELADLRLQGTLLEGPIPRS-----------FRALNKLEDLRIGDLSAE- 260
G IP G L L L L G IP + F A + ++ + E
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 261 DSTLDFLESQ----KSLSILSLRN-CRVS-----GKIPDQLGTFAKLQLLDLSFNKLTGQ 310
+ LE Q + L+ LS RN C ++ G + LD+S+N L+G
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 311 IPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPR 360
IP + + L L LG+N++SG +P + L LD+S N L G +P+
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 139/341 (40%), Gaps = 84/341 (24%)
Query: 73 DCTSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYL 132
DC++ + HL I + G+ + +L LN+ N G IP L ++QYL
Sbjct: 218 DCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 271
Query: 133 SLGINNFTGRVPTEL-GNLTKLISLXXXXXXXXGPLPKELG------------------- 172
SL N FTG +P L G L L G +P G
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 173 ------KLTSLQQLYIDSSGVTGSIPQEFANLKS-------------------------- 200
K+ L+ L + + +G +P+ NL +
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 201 -LRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259
L+ L+ +N FTGKIP +EL L L L G IP S +L+KL DL++
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL----- 446
Query: 260 EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319
L+ LE G+IP +L L+ L L FN LTG+IP+ L + +
Sbjct: 447 ---WLNMLE----------------GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 320 TLQYLYLGNNNLSGELPVNIIA-PNLIALDVSYNPLSGNLP 359
L ++ L NN L+GE+P I NL L +S N SGN+P
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 109/263 (41%), Gaps = 54/263 (20%)
Query: 90 DIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 149
D+ GE+PS L L ++L N L G IP IG+L N+ L L N+F+G +P ELG+
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 150 LTKLISLXXXXXXXXGPLP----KELGKLTS-----LQQLYIDSSGVT------------ 188
LI L G +P K+ GK+ + + +YI + G+
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 189 -------------------------GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 223
G F N S+ L S N+ +G IP+ G++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 224 ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILS---LRN 280
L L L + G IP + L L I DLS+ ++ +L++L+ L N
Sbjct: 654 YLFILNLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 281 CRVSGKIPD--QLGTFAKLQLLD 301
+SG IP+ Q TF + L+
Sbjct: 711 NNLSGPIPEMGQFETFPPAKFLN 733
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 136/295 (46%), Gaps = 32/295 (10%)
Query: 105 LMDLNLGQNVLNGSIPA--EIGQLSNMQYLSLGIN--NFTGRVPTELGNLTKLISLXXXX 160
L L+L +N L+G + +G S +++L++ N +F G+V L L L L
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 161 XXXXGPLPKELGKLTS-----LQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKI 215
G +G + S L+ L I + ++G + + + +L L S N F+ I
Sbjct: 158 NSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 213
Query: 216 PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLES-----Q 270
P F G + L L + G L G R+ +L+ L I S+ F+
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-------SSNQFVGPIPPLPL 265
Query: 271 KSLSILSLRNCRVSGKIPDQL-GTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
KSL LSL + +G+IPD L G L LDLS N G +P S L+ L L +N
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 330 NLSGELPVNIIAP--NLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQ 382
N SGELP++ + L LD+S+N SG LP + LS +++ +++NN
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFS 378
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 75 TSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSL 134
T N C+IT ++Y G +M L++ N+L+G IP EIG + + L+L
Sbjct: 606 TRNPCNITS-RVYG----GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 135 GINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQ 193
G N+ +G +P E+G+L L L G +P+ + LT L ++ + ++ ++G IP+
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 3/155 (1%)
Query: 89 LDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELG 148
L+ G +L L N+ V G +M +L + N +G +P E+G
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 149 NLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASD 208
++ L L G +P E+G L L L + S+ + G IPQ + L L + S+
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 209 NLFTGKIPEF--FGTLTELADLRLQGTLLEGPIPR 241
N +G IPE F T L G L P+PR
Sbjct: 711 NNLSGPIPEMGQFETFPPAKFLNNPG-LCGYPLPR 744
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 278 LRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP--TSLQDLSTLQYLYLGNNNLS--G 333
L N ++G + A L LDLS N L+G + TSL S L++L + +N L G
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 334 ELPVNIIAPNLIALDVSYNPLSG 356
++ + +L LD+S N +SG
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISG 162
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 120/276 (43%), Gaps = 43/276 (15%)
Query: 143 VPTELGNLTKLISLXXX-XXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 201
+P+ L NL L L GP+P + KLT L LYI + V+G+IP + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 202 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261
L S N +G +P +L L + G + G IP S+ + +KL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL------------ 175
Query: 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQL--LDLSFNKLTGQIPTSLQDLS 319
+ +++ R++GKIP TFA L L +DLS N L G
Sbjct: 176 -----------FTSMTISRNRLTGKIPP---TFANLNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 320 TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAKGGL--SMNV-----I 372
Q ++L N+L+ +L ++ NL LD+ N + G LP+ + S+NV
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 373 GSSINANNLQ--DGKALGMMQCLHSNTKCSNKVPSC 406
G NLQ D A +CL C + +P+C
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCL-----CGSPLPAC 312
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 169 KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADL 228
K +LT L+ LY++ + + F LK+L LW +DN F L LA+L
Sbjct: 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 229 RLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP 288
RL L+ PR F +L KL L +G + + SL L L N ++ ++P
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVP 173
Query: 289 DQLGTFAK---LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
+ G F K L+ L L N+L + L L+ L L N
Sbjct: 174 E--GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 95 LPSELF-MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKL 153
LP +F L L +L L +N L P L+ + YLSLG N LT L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 154 ISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 209
L KLT L+ L +D++ + F +L+ L++L +N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%)
Query: 219 FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSL 278
F LT+L L L L+ F+ L LE L + D + + + +L+ L L
Sbjct: 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116
Query: 279 RNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332
++ P + KL L L +N+L L++L+ L L NN L
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 178 QQLYIDSSGVTGSIPQEFANLKSLRILWASDNL--------FTGKI-------------- 215
Q++++ + ++ F ++L ILW N+ FTG
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 216 ---PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS 272
P F L L L L L+ P FR L L+ L + D + + D +
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 273 LSILSLRNCRVSGKIPDQLGTFAKLQLLD---LSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
L+ L L R+S +P++ F L LD L N++ P + +DL L LYL N
Sbjct: 154 LTHLFLHGNRIS-SVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Query: 330 NLSGELPVNIIAP 342
NLS LP +AP
Sbjct: 211 NLSA-LPTEALAP 222
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 24/162 (14%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L L++D G+ P F L +L+ L+ DN + F L L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G + R+FR L+ SL L L RV+
Sbjct: 157 LFLHGNRISSVPERAFRGLH------------------------SLDRLLLHQNRVAHVH 192
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
P +L L L N L+ +L L LQYL L +N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 178 QQLYIDSSGVTGSIPQEFANLKSLRILWASDNL--------FTGKI-------------- 215
Q++++ + ++ F ++L ILW N+ FTG
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 216 ---PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS 272
P F L L L L L+ P FR L L+ L + D + + D +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 273 LSILSLRNCRVSGKIPDQLGTFAKLQLLD---LSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
L+ L L R+S +P++ F L LD L N++ P + +DL L LYL N
Sbjct: 155 LTHLFLHGNRIS-SVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 330 NLSGELPVNIIAP 342
NLS LP +AP
Sbjct: 212 NLSA-LPTEALAP 223
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 24/162 (14%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L L++D G+ P F L +L+ L+ DN + F L L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G + R+FR L+ SL L L RV+
Sbjct: 158 LFLHGNRISSVPERAFRGLH------------------------SLDRLLLHQNRVAHVH 193
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329
P +L L L N L+ +L L LQYL L +N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 120/289 (41%), Gaps = 46/289 (15%)
Query: 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXX 163
++ +L+L LNG +P+ I +++++ L L N+F + L L
Sbjct: 278 RVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMR 336
Query: 164 XGPL-PKELGKLTSLQQLYIDSSGVTGS--IPQEFANLKSLRILWASDNLFTGKIPEFFG 220
L + L KL +LQ+L + S + S + NL+ L+ L S N G + F
Sbjct: 337 KLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFK 396
Query: 221 TLTELADLRLQGTLLEGPIPRS-------FRALN---------------KLEDLRIGDL- 257
+L L + T L P S R LN L+DLR +L
Sbjct: 397 ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQ 456
Query: 258 --SAEDSTL---DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP 312
S +D ++ + L+ SL IL L +C + + LDLS N LTG
Sbjct: 457 GNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSM 516
Query: 313 TSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIA-------LDVSYNPL 354
+L L L YL + +NN + II P+L+ +++S+NPL
Sbjct: 517 DALSHLKGL-YLNMASNN------IRIIPPHLLPALSQQSIINLSHNPL 558
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 272 SLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
+L L L C+++ D + +L + L+ N L TSL L++L+L +
Sbjct: 57 NLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGI 116
Query: 332 SG--ELPVNIIAPNLIALDVSYNPLSG-NLPRNFAKGGLSM 369
S +PV+ + NL +L + N +S NLP NF L +
Sbjct: 117 SNLEFIPVHNLE-NLESLHLGSNHISSINLPENFPTQNLKV 156
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 8/167 (4%)
Query: 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKI-PEFFGTLTELADLRLQGTLLEGP 238
L++ S+ + G F L L L SDN + P F L L L L L+
Sbjct: 60 LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQ 298
P FR L L+ L + D + + + +L+ L L R+ +P+ F L
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEH--AFRGLH 176
Query: 299 LLD---LSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
LD L N + P + +DL L LYL NNLS LP ++ P
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVP 222
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 66/196 (33%), Gaps = 24/196 (12%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L L++D G+ P F L +L+ L+ DN F L L
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G + +FR L+ SL L L V+
Sbjct: 157 LFLHGNRIPSVPEHAFRGLH------------------------SLDRLLLHQNHVARVH 192
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIAL 347
P +L L L N L+ L L +LQYL L +N + + L
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKF 252
Query: 348 DVSYNPLSGNLPRNFA 363
S + + NLP+ A
Sbjct: 253 RGSSSEVPCNLPQRLA 268
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 56/161 (34%), Gaps = 25/161 (15%)
Query: 172 GKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQ 231
G S Q++++ + ++ F + ++L ILW N G F LT L L L
Sbjct: 28 GIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLS 87
Query: 232 -GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQ 290
L P +FR L L L L C + P
Sbjct: 88 DNAQLRVVDPTTFRGLGHLH------------------------TLHLDRCGLQELGPGL 123
Query: 291 LGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
A LQ L L N L + +DL L +L+L N +
Sbjct: 124 FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 175 TSLQQLYIDSSGVTGSIPQEFANLKSLRIL-WASDNLFTGKIPEF--FGTLTELADLRLQ 231
TSL+ L + +GV ++ F L+ L L + NL ++ EF F +L L L +
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDIS 429
Query: 232 GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL-DFLESQKSLSILSLRNCRVSGKIPDQ 290
T F L+ LE L++ S +++ L D ++L+ L L C++ P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 291 LGTFAKLQLLDLSFNKLTGQIPTSLQD-LSTLQYLYLGNN 329
+ + LQ+L+++ N+L +P + D L++LQ ++L N
Sbjct: 490 FNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTN 528
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 159 NKIQSIYCTDLRVLHQM 175
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 12/195 (6%)
Query: 174 LTSLQQLYIDSSGVT--GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQ 231
L SL+ L + +G++ G Q SL+ L S N F G L +L L Q
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 404
Query: 232 GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDF---LESQKSLSILSLR-NCRVSGKI 287
+ L+ F L +L D+S + + F SL +L + N +
Sbjct: 405 HSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII--APNLI 345
PD L LDLS +L PT+ LS+LQ L + +N L +P I +L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQ 521
Query: 346 ALDVSYNPLSGNLPR 360
+ + NP + PR
Sbjct: 522 KIWLHTNPWDCSCPR 536
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 35/209 (16%)
Query: 169 KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPE-FFGTLTELAD 227
K L LQ+LYI + + P ++L LRI DN K+P+ F L +
Sbjct: 96 KAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI---HDNRIR-KVPKGVFSGLRNMNC 151
Query: 228 LRLQGTLLE--GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSG 285
+ + G LE G P +F L KL LRI + D E+ L+ L L + ++
Sbjct: 152 IEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQA 207
Query: 286 KIPDQLGTFAKLQLLDLSFNKLT-----------------------GQIPTSLQDLSTLQ 322
+ L ++KL L L N++ ++P L DL LQ
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267
Query: 323 YLYLGNNNLSGELPVNIIAPNLIALDVSY 351
+YL NN++ ++ VN P + +Y
Sbjct: 268 VVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 274 SILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 333
++L L+N +S D L L L NK++ + L LQ LY+ N+L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115
Query: 334 ELPVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVI 372
E+P N+ + +L+ L + N + +P+ G +MN I
Sbjct: 116 EIPPNLPS-SLVELRIHDNRIR-KVPKGVFSGLRNMNCI 152
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 170 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLR 229
+L +LQ L + SS + F +L SL L SDN + +FG L+ L L
Sbjct: 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104
Query: 230 LQGTLLEG-PIPRSFRALNKLEDLRIGDLS--AEDSTLDF--LESQKSLSI--LSLRNCR 282
L G + + F L L+ LRIG++ +E +DF L S L I LSLRN +
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164
Query: 283 VSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS----GELPVN 338
L + + L L ++ + LS+++YL L + NL+ LPV+
Sbjct: 165 -----SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219
Query: 339 IIA 341
++
Sbjct: 220 EVS 222
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 245 ALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSF 304
+ NK+ + GDL A +L +L L++ R++ D + L+ LDLS
Sbjct: 34 SFNKITYIGHGDLRA----------CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83
Query: 305 NKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIAL 347
N L+ + LS+L+YL L N L V + PNL L
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNL 125
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 169 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 220
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 276
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 277 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 169 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 220
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 276
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 277 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 322
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 169 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 225
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 281
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 282 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 327
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 170 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLR 229
+L +LQ L + SS + F +L SL L SDN + +FG L+ L L
Sbjct: 71 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 130
Query: 230 LQGTLLEG-PIPRSFRALNKLEDLRIGDLS--AEDSTLDF--LESQKSLSI--LSLRNCR 282
L G + + F L L+ LRIG++ +E +DF L S L I LSLRN +
Sbjct: 131 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 190
Query: 283 VSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS----GELPVN 338
L + + L L ++ + LS+++YL L + NL+ LPV+
Sbjct: 191 -----SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 245
Query: 339 IIA 341
++
Sbjct: 246 EVS 248
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 245 ALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSF 304
+ NK+ + GDL A +L +L L++ R++ D + L+ LDLS
Sbjct: 60 SFNKITYIGHGDLRA----------CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 109
Query: 305 NKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIAL 347
N L+ + LS+L+YL L N L V + PNL L
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNL 151
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 169 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 170 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 224
Query: 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 225 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 280
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 281 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 326
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXX 161
L KL+D+ + N + P + L+N+ L+L N T P L NLT L L
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 162 XXXGPLPKELGKLTSLQQLYIDSSGVTGSIP--------------------QEFANLKSL 201
L LTSLQQL S+ VT P A L +L
Sbjct: 140 TISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 202 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261
L A++N + P G LT L +L L G L+ + +L L DL + + +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN--NQI 251
Query: 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321
S L L L+ L L ++S P L L L+L+ N+L P S +L L
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 322 QYLYLGNNNLSGELPV 337
YL L NN+S PV
Sbjct: 308 TYLTLYFNNISDISPV 323
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 19/211 (9%)
Query: 92 MGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLT 151
+ + P + F L L + L +P Q + ++ L+L N +P + +L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLN 150
Query: 152 KLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLF 211
+L L LP+ L D+SG Q NL+SLR+ W
Sbjct: 151 RLRELSIRACPELTELPEPLAS--------TDASGEH----QGLVNLQSLRLEWTG---- 194
Query: 212 TGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQK 271
+P L L L+++ + L P + L KLE+L + +A + +
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 272 SLSILSLRNCRVSGKIPDQLGTFAKLQLLDL 302
L L L++C +P + +L+ LDL
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXX 161
L KL+D+ + N + P + L+N+ L+L N T P L NLT L L
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 162 XXXGPLPKELGKLTSLQQLYIDSSGVTGSIP--------------------QEFANLKSL 201
L LTSLQQL S+ VT P A L +L
Sbjct: 140 TISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 202 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261
L A++N + P G LT L +L L G L+ + +L L DL + + +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN--NQI 251
Query: 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321
S L L L+ L L ++S P L L L+L+ N+L P S +L L
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 322 QYLYLGNNNLSGELPV 337
YL L NN+S PV
Sbjct: 308 TYLTLYFNNISDISPV 323
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXX 161
L KL+D+ + N + P + L+N+ L+L N T P L NLT L L
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 162 XXXGPLPKELGKLTSLQQLYIDSSGVTGSIP--------------------QEFANLKSL 201
L LTSLQQL S+ VT P A L +L
Sbjct: 140 TISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 202 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261
L A++N + P G LT L +L L G L+ + +L L DL + + +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN--NQI 251
Query: 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321
S L L L+ L L ++S P L L L+L+ N+L P S +L L
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 322 QYLYLGNNNLSGELPV 337
YL L NN+S PV
Sbjct: 308 TYLTLYFNNISDISPV 323
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 173 KLTSLQQLYIDSSGVT--GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 230
KLT L +L + S+G++ G Q SL+ L S N F G L +L L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 108
Query: 231 QGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDF---LESQKSLSILSLR-NCRVSGK 286
Q + L+ F L +L D+S + + F SL +L + N
Sbjct: 109 QHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166
Query: 287 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
+PD L LDLS +L PT+ LS+LQ L + +NN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 38/166 (22%)
Query: 87 YALDI----MGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGR 142
+ALD+ + + + +F L L L N L +PAEI LSN++ L L N T
Sbjct: 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS- 284
Query: 143 VPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLR 202
LP ELG L+ Y + VT ++P EF NL +L+
Sbjct: 285 ------------------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319
Query: 203 ILWASDNLFTGKIPEFFGTLTELAD----LRLQGTLLEGPIPRSFR 244
L N +F LTE + L+ E P+P R
Sbjct: 320 FLGVEGNPLEK---QFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 249 LEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308
L +L+I ++SA DFL + L L ++ ++P ++ + L++LDLS N+LT
Sbjct: 231 LSNLQIFNISANIFKYDFL------TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
Query: 309 GQIPTSLQDLSTLQYLYLGNN 329
+P L L+Y Y +N
Sbjct: 284 S-LPAELGSCFQLKYFYFFDN 303
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 142 RVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 201
R PTE L ++ LPK + + + +LY+D + T +P+E +N K L
Sbjct: 3 RCPTECTCLDTVVRCSNKGLKV---LPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHL 56
Query: 202 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261
++ S+N + + F +T+L L L L PR+F + L+ LR+ L D
Sbjct: 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF---DGLKSLRLLSLHGND 113
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 267 LESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYL 326
L + K L+++ L N R+S +L L LS+N+L P + L +L+ L L
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109
Query: 327 GNNNLS 332
N++S
Sbjct: 110 HGNDIS 115
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 27/189 (14%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L++LY+ + + +P++ K+L+ L +N T F L ++
Sbjct: 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 228 LRLQGTLLE--GPIPRSFRALNKLEDLRIGDL-----------SAEDSTLD--------- 265
+ L L+ G +F+ + KL +RI D S + LD
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 266 -FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYL 324
L+ +L+ L L +S L L+ L L+ NKL ++P L D +Q +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 325 YLGNNNLSG 333
YL NNN+S
Sbjct: 269 YLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 27/189 (14%)
Query: 168 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227
P L L++LY+ + + +P++ K+L+ L +N T F L ++
Sbjct: 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 228 LRLQGTLLE--GPIPRSFRALNKLEDLRIGDL-----------SAEDSTLD--------- 265
+ L L+ G +F+ + KL +RI D S + LD
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 266 -FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYL 324
L+ +L+ L L +S L L+ L L+ NKL ++P L D +Q +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 325 YLGNNNLSG 333
YL NNN+S
Sbjct: 269 YLHNNNISA 277
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 26/144 (18%)
Query: 195 FANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRI 254
F NL L++L S +L + F L L L LQG P+
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG----NHFPK------------- 463
Query: 255 GDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTS 314
G++ +S L++ L IL L C +S + + +DLS N+LT +S
Sbjct: 464 GNIQKTNS----LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS---SS 516
Query: 315 LQDLSTLQ--YLYLGNNNLSGELP 336
++ LS L+ YL L +N++S LP
Sbjct: 517 IEALSHLKGIYLNLASNHISIILP 540
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 99 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 147
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 293 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 342
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNN 330
+S+ L L + +++ P L + LQ+L L N++T P L L+ LQYL +GNN
Sbjct: 113 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQ 168
Query: 331 LSGELPV 337
++ P+
Sbjct: 169 VNDLTPL 175
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 13/161 (8%)
Query: 246 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 305
LN+++ + +L+A TL+ L Q + V G++ FAKL+ LDLS N
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQV-----VFAKLKTLDLSSN 201
Query: 306 KLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLS-GNLPRNFAK 364
KL P Q + + ++ L NN L + NL D+ N G L F+K
Sbjct: 202 KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 365 GGLSMNVIGSSINANNLQDGKALGMMQCLHSNTKCSNKVPS 405
V ++ Q+ + + H C +P+
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 280 NCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 339
+CR G Q+L L N++T P L L+ LYLG+N L G LPV +
Sbjct: 25 DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV 83
Query: 340 IAP--NLIALDVSYNPLS 355
L LD+ N L+
Sbjct: 84 FDSLTQLTVLDLGTNQLT 101
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 18/192 (9%)
Query: 176 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235
++Q+LY+ + + P F N+ L +L N + F +L L + L
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 236 EGPIPRSFRALNKLEDLRIGD--LSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGT 293
E +F+A L++L++ L+ D +L I SL + VS + L
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSL----------IPSLFHANVSYNLLSTLAI 203
Query: 294 FAKLQLLDLSFNKL-TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYN 352
++ LD S N + + P +++ L L L +NNL+ + + P L+ +D+SYN
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWL-LNYPGLVEVDLSYN 258
Query: 353 PLSGNLPRNFAK 364
L + F K
Sbjct: 259 ELEKIMYHPFVK 270
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 25/178 (14%)
Query: 195 FANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP----IPRSFRA---LN 247
F N L L S+N + F T L +L+L L IP F A N
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196
Query: 248 KLEDLRI----GDLSAEDSTLDFLES--QKSLSILSLRNCRVSGKIPDQLGTFAKLQLLD 301
L L I +L A ++++ + L+IL L++ ++ L + L +D
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVD 254
Query: 302 LSFNKLTGQIPTSLQDLSTLQYLYLGNN-----NLSGELPVNIIAPNLIALDVSYNPL 354
LS+N+L + + L+ LY+ NN NL G+ P+ P L LD+S+N L
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ-PI----PTLKVLDLSHNHL 307
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 296 KLQLLDLSFNKL-TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPL 354
K+Q++ + +N L T + TSLQ L L N L G+LP L +L+++YN +
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 355 SGNLPRNFAKGGLSMNVIGSSINANNLQ 382
+ +P NF G + V S N L+
Sbjct: 366 T-EIPANFC--GFTEQVENLSFAHNKLK 390
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK-LTG-QIPTSLQDLS------TLQ 322
K L+ + + NC K+P L + QL++++ N+ ++G Q+ Q L+ +Q
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 323 YLYLGNNNLSGELPVNI---IAPNLIALDVSYNPLSGNLP 359
+Y+G NNL PV L L+ YN L G LP
Sbjct: 309 IIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLP 347
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 259 AEDSTLDFLESQKSLSILSLRNCRVSGKI--------------PDQLGTFAKLQLLDLSF 304
AE+ T ++E+Q+ L L LR+ R G++ PD +L L+LSF
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 305 NKLTGQIPTSLQDLSTLQYLYLGNNNL 331
N L ++Q LS LQ L L N L
Sbjct: 90 NALESLSWKTVQGLS-LQELVLSGNPL 115
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 297 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL---PVNIIAPNLIA 346
L+ + + N+ TG+IP + ++ + + Y+Y + L G+L PV I A L+A
Sbjct: 302 LETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLA 354
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 297 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL---PVNIIAPNLIA 346
L+ + + N+ TG+IP + ++ + + Y+Y + L G+L PV I A L+A
Sbjct: 302 LETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLA 354
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNN 330
+S+ L L + +++ P L + LQ+L L N++T P L L+ LQYL +GN
Sbjct: 107 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162
Query: 331 LSGELPV 337
+S P+
Sbjct: 163 VSDLTPL 169
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
Query: 207 SDNLFTGKIPEFFGTLTELADLRLQGTLLE-----GPIPRSFRALNKLE--------DLR 253
S+NL T + E G LTEL L LQ L+ + ++L +L+ D +
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 254 IGDLSAEDSTLDFLESQKSLS------------ILSLRNCRVSGKIPDQLGTFAKLQLLD 301
GD S S L S L+ +L L + ++ IP Q+ LQ L+
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELN 450
Query: 302 LSFNKLTGQIPTSLQD-LSTLQYLYLGNN 329
++ N+L +P + D L++LQ ++L N
Sbjct: 451 VASNQLKS-VPDGIFDRLTSLQKIWLHTN 478
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 112 QNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKEL 171
QN+ S+PA I ++ Q L L N T P +L L L
Sbjct: 20 QNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77
Query: 172 GKLTSLQQLYIDSSGVTGSIPQ-EFANLKSLRILWASDNLFTGKIPEFFGTLTELAD--- 227
KLT L QL ++ + + SIP+ F NLKSL ++ +N + + + +AD
Sbjct: 78 DKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTS 136
Query: 228 --LRLQGTLLEGP 238
+R G + P
Sbjct: 137 IVMRWDGKAVNDP 149
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 13/161 (8%)
Query: 246 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 305
LN+++ + +L+A TL+ L Q + V G++ FAKL+ LDLS N
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQV-----VFAKLKTLDLSSN 201
Query: 306 KLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLS-GNLPRNFAK 364
KL P Q + + ++ L NN L + NL D+ N G L F+K
Sbjct: 202 KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 365 GGLSMNVIGSSINANNLQDGKALGMMQCLHSNTKCSNKVPS 405
V ++ Q+ + + H C +P+
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
>pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From
Azorhizobium Caulinodans
Length = 377
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 209 NLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA----EDSTL 264
+FTG F L D+ L+ +L PI R + +++ + +G A E + L
Sbjct: 58 EVFTGTPEAAFSAL----DIYLRPLILGAPIKRVRELMARMDKMLVGHGEAKAAVEMALL 113
Query: 265 DFLESQKSLSILSLRNCRVSGKIP 288
D L LS+ L RV +IP
Sbjct: 114 DILGKATGLSVADLLGGRVRDRIP 137
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 173 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQG 232
+LTSL QLY+ + + F L SL L S N F LT+L +L L
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 233 TLLEGPIPRSFRALNKLEDLRIGD---LSAEDSTLDFLES 269
L+ F L +L+DLR+ S D D L S
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 1/126 (0%)
Query: 92 MGELPSELF-MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 150
+ LP+ +F L L L LG N L +L+++ YL+L N L
Sbjct: 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 151 TKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL 210
T+L L KLT L+ L + + + F L SL+ +W DN
Sbjct: 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
Query: 211 FTGKIP 216
+ P
Sbjct: 160 WDCTCP 165
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 159 NKIQSIYCTDLRVLHQM 175
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 174 LTSLQQLYIDSSGVT--GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQ 231
L SL+ L + +G++ G Q SL+ L S N F G L +L L Q
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 404
Query: 232 GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDF---LESQKSLSILSLR-NCRVSGKI 287
+ L+ F L +L D+S + + F SL +L + N +
Sbjct: 405 HSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
PD L LDLS +L PT+ LS+LQ L + +NN
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 183 NKIQSIYCTDLRVLHQM 199
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 287 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
+PD L LDLS +L PT+ LS+LQ L + +NN
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 159 NKIQSIYCTDLRVLHQM 175
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 219 FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL---SAEDSTLDFLESQKSLSI 275
+ +L+ L+ L L G ++ +F L+ L+ L + S E+ + L++ K L++
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 276 LSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321
N S K+P+ L+ LDLS NK+ T L+ L +
Sbjct: 132 A--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 171 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 223
LG L + L+ SG TG+ Q +K I WAS NL + E++ +
Sbjct: 28 LGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS 80
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 160 NKIQSIYCTDLRVLHQM 176
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 160 NKIQSIYCTDLRVLHQM 176
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 219 FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL---SAEDSTLDFLESQKSLSI 275
+ +L+ L+ L L G ++ +F L+ L+ L + S E+ + L++ K L++
Sbjct: 73 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 132
Query: 276 LSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321
N S K+P+ L+ LDLS NK+ T L+ L +
Sbjct: 133 A--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 101 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 161 NKIQSIYCTDLRVLHQM 177
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 219 FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL---SAEDSTLDFLESQKSLSI 275
+ +L+ L+ L L G ++ +F L+ L+ L + S E+ + L++ K L++
Sbjct: 74 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 133
Query: 276 LSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321
N S K+P+ L+ LDLS NK+ T L+ L +
Sbjct: 134 A--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 171 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 223
LG L + L+ SG TG+ Q +K I WAS NL + E++ +
Sbjct: 29 LGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS 81
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 80 HITHL-KIY-ALDIMGELPSELF-MLRKLMDLNLGQNVLNGSIPA-EIGQLSNMQYLSLG 135
H+T L K+Y + + LPS +F L KL +L L N L SIPA +L+N+Q LSL
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 136 INNF 139
N
Sbjct: 164 TNQL 167
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 171 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 223
LG L + L+ SG TG+ Q +K I WAS NL + E++ +
Sbjct: 29 LGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS 81
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 80 HITHL-KIY-ALDIMGELPSELF-MLRKLMDLNLGQNVLNGSIPA-EIGQLSNMQYLSLG 135
H+T L K+Y + + LPS +F L KL +L L N L SIPA +L+N+Q LSL
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 136 INNF 139
N
Sbjct: 164 TNQL 167
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 123 IGQLSNMQYLSLGINNFTG-RVPTELGNLTKLISLXXXXXXXXGPLPKEL-GKLTSLQQL 180
I L N++YL+LG N EL NLT LI LP + KLT+L++L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLI----LTGNQLQSLPNGVFDKLTNLKEL 114
Query: 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240
+ + + F L +L L + N F LT L +L L L+
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 241 RSFRALNKLEDLRI 254
F L +L+DLR+
Sbjct: 175 GVFDKLTQLKDLRL 188
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 1/126 (0%)
Query: 92 MGELPSELF-MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 150
+ LP+ +F L L +L L +N L +L+N+ YL+L N L
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Query: 151 TKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL 210
T L L KLT L+ L + + + F L SL+ +W DN
Sbjct: 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Query: 211 FTGKIP 216
+ P
Sbjct: 217 WDCTCP 222
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 72/177 (40%), Gaps = 16/177 (9%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT 233
T LQ+L + ++ + G +P L L+ L S N F L L ++G
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 234 LLEGPIPRSFRALNKLEDLRIGDLS-----AEDSTLDFLESQKSLSILSLRNCRVSGKIP 288
+ + L KL +L+ DLS A D L++ L L+L + G
Sbjct: 333 V--KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS 390
Query: 289 DQLGTFAKLQLLDLSFNKLTGQIPTS-LQDLSTLQYLYL-------GNNNLSGELPV 337
+L+LLDL+F +L P S Q+L LQ L L N +L LPV
Sbjct: 391 QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV 447
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 167 LPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP 216
+PK++ L +LQ+L + S+ + F L SL+ +W DN + P
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 273 LSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD-LSTLQYLYLGNNNL 331
+ +L L N R+ IP + LQ L+++ N+L +P + D L++LQY++L +N
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN-- 507
Query: 332 SGELPVNIIAPNLIALDVSYNPLSG 356
P + P + L N SG
Sbjct: 508 ----PWDCTCPGIRYLSEWINKHSG 528
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 232
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 101 LSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 233 TLLEGPIPRSFRALNKL 249
++ R L+++
Sbjct: 161 NKIQSIYCTDLRVLHQM 177
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 265 DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308
D L K+L ILS+RN ++ + LG +KL++LDL N++T
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT 163
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 29/213 (13%)
Query: 170 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN--------LFTG-------K 214
E L++L ++ + V+ P F NL +LR L N +FTG
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 215 IPE---------FFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 265
I E F L L L + L R+F LN LE L + + +
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 266 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLS-FNKLTGQIPTSLQDLSTLQYL 324
L L +L LR+ ++ +L++L++S + L P L L+ L L
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSL 229
Query: 325 YLGNNNLSG--ELPVNIIAPNLIALDVSYNPLS 355
+ + NL+ L V + L L++SYNP+S
Sbjct: 230 SITHCNLTAVPYLAVRHLV-YLRFLNLSYNPIS 261
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 18/192 (9%)
Query: 176 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 235
++Q+LY+ + + P F N+ L +L N + F +L L + L
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 236 EGPIPRSFRALNKLEDLRIGD--LSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGT 293
E +F+A L++L++ L+ D +L I SL + VS + L
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSL----------IPSLFHANVSYNLLSTLAI 209
Query: 294 FAKLQLLDLSFNKL-TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYN 352
++ LD S N + + P +++ L L L +NNL+ + + P L+ +D+SYN
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWL-LNYPGLVEVDLSYN 264
Query: 353 PLSGNLPRNFAK 364
L + F K
Sbjct: 265 ELEKIMYHPFVK 276
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 300 LDLSFNKLTGQIPTSLQDLSTLQYLYLGNN-----NLSGELPVNIIAPNLIALDVSYNPL 354
+DLS+N+L + + L+ LY+ NN NL G+ P+ P L LD+S+N L
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ-PI----PTLKVLDLSHNHL 313
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 223 TELADLRLQGTLLEGPIPRSFRALNKL-----EDLRIGDLSAEDSTLDFLESQKSLSILS 277
+ L L L ++ P F A+ +L ++++G E L+ + S+ LS
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 233
Query: 278 LRNCRVSGKIPDQ-LG-TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 335
L N ++S LG + L +LDLS+N L S L L+Y +L NN+
Sbjct: 234 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--- 290
Query: 336 PVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHS 395
++ + +L L +N NL R+F K +S+ + D + ++CL
Sbjct: 291 --HLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKI-------DDFSFQWLKCLEH 338
Query: 396 NTKCSNKVPSCK 407
N +P K
Sbjct: 339 LNMEDNDIPGIK 350
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 291 LGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331
G L L+L N+LTG P + + S +Q L LG N +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 171 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 230
G+L L +L + + +TG P F ++ L +N + F L +L L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 231 QGTLLEGPIPRSFRALNKLEDLRIG 255
+ +P SF LN L L +
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLA 134
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 223 TELADLRLQGTLLEGPIPRSFRALNKL-----EDLRIGDLSAEDSTLDFLESQKSLSILS 277
+ L L L ++ P F A+ +L ++++G E L+ + S+ LS
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 238
Query: 278 LRNCRVSGKIPDQ-LG-TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 335
L N ++S LG + L +LDLS+N L S L L+Y +L NN+
Sbjct: 239 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--- 295
Query: 336 PVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHS 395
++ + +L L +N NL R+F K +S+ + D + ++CL
Sbjct: 296 --HLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKI-------DDFSFQWLKCLEH 343
Query: 396 NTKCSNKVPSCK 407
N +P K
Sbjct: 344 LNMEDNDIPGIK 355
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 223 TELADLRLQGTLLEGPIPRSFRALNKL-----EDLRIGDLSAEDSTLDFLESQKSLSILS 277
+ L L L ++ P F A+ +L ++++G E L+ + S+ LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 228
Query: 278 LRNCRVSGKIPDQ-LG-TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 335
L N ++S LG + L +LDLS+N L S L L+Y +L NN+
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--- 285
Query: 336 PVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHS 395
++ + +L L +N NL R+F K +S+ + D + ++CL
Sbjct: 286 --HLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKI-------DDFSFQWLKCLEH 333
Query: 396 NTKCSNKVPSCK 407
N +P K
Sbjct: 334 LNMEDNDIPGIK 345
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 214 KIPEF--FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL-DFLESQ 270
++ EF F +L +L L + T + F L L L++ S +D+TL + +
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472
Query: 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKL 307
+L+ L L C++ T +LQLL++S N L
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 214 KIPEF--FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL-DFLESQ 270
++ EF F +L +L L + T + F L L L++ S +D+TL + +
Sbjct: 408 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 467
Query: 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKL 307
+L+ L L C++ T +LQLL++S N L
Sbjct: 468 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,898,574
Number of Sequences: 62578
Number of extensions: 445984
Number of successful extensions: 1566
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 239
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)