Query 014726
Match_columns 419
No_of_seqs 469 out of 4669
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.1E-41 6.7E-46 362.8 28.8 336 25-376 25-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.7E-36 1.5E-40 321.5 21.6 296 81-376 142-440 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-32 2.3E-37 258.8 3.3 299 78-376 124-428 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.1E-32 1.3E-36 253.8 1.0 327 79-406 149-482 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1.3E-30 2.7E-35 246.8 -3.0 293 76-375 4-301 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 8.9E-29 1.9E-33 234.3 -5.1 304 79-394 32-340 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 8E-26 1.7E-30 204.2 -7.7 243 79-332 68-310 (565)
8 PLN03210 Resistant to P. syrin 99.9 3.7E-21 7.9E-26 208.5 22.9 287 78-376 557-881 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 4.6E-25 1E-29 199.3 -9.0 263 81-355 47-310 (565)
10 PRK15387 E3 ubiquitin-protein 99.9 3.2E-21 6.9E-26 195.6 17.1 263 81-391 203-467 (788)
11 PLN03210 Resistant to P. syrin 99.9 4E-20 8.6E-25 200.5 22.4 298 79-393 532-869 (1153)
12 KOG0618 Serine/threonine phosp 99.8 5.3E-23 1.1E-27 203.4 -1.3 108 265-375 377-487 (1081)
13 KOG4237 Extracellular matrix p 99.8 3.7E-23 8E-28 186.8 -2.5 251 104-354 68-358 (498)
14 PRK15370 E3 ubiquitin-protein 99.8 3E-20 6.6E-25 189.5 17.9 320 23-377 57-428 (754)
15 KOG0618 Serine/threonine phosp 99.8 1.9E-22 4E-27 199.5 -2.6 243 104-353 242-487 (1081)
16 PRK15387 E3 ubiquitin-protein 99.8 5.8E-20 1.2E-24 186.5 13.7 243 79-362 222-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 6.6E-22 1.4E-26 186.5 -0.4 272 83-354 2-319 (319)
18 KOG4237 Extracellular matrix p 99.8 9.5E-22 2.1E-26 177.7 -2.1 255 78-332 66-359 (498)
19 PRK15370 E3 ubiquitin-protein 99.8 2.2E-19 4.8E-24 183.3 12.8 245 80-355 179-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.8 9.7E-20 2.1E-24 171.8 1.0 252 80-331 24-319 (319)
21 KOG0617 Ras suppressor protein 99.8 2.7E-20 5.8E-25 150.2 -2.8 163 78-246 32-195 (264)
22 KOG0617 Ras suppressor protein 99.7 2.7E-19 5.9E-24 144.4 -4.9 154 99-257 29-183 (264)
23 PLN03150 hypothetical protein; 99.6 1.8E-15 4E-20 153.8 12.4 157 23-188 366-528 (623)
24 COG4886 Leucine-rich repeat (L 99.3 1.9E-12 4.1E-17 125.8 7.4 200 107-315 97-297 (394)
25 COG4886 Leucine-rich repeat (L 99.3 2E-12 4.4E-17 125.6 7.5 201 130-339 96-297 (394)
26 KOG1909 Ran GTPase-activating 99.3 2E-13 4.4E-18 122.5 -0.4 134 198-331 156-310 (382)
27 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.3E-18 131.4 -3.5 175 80-263 76-250 (722)
28 KOG3207 Beta-tubulin folding c 99.3 6.5E-13 1.4E-17 122.5 0.4 210 124-334 118-341 (505)
29 KOG0532 Leucine-rich repeat (L 99.3 3.5E-13 7.6E-18 128.0 -1.5 195 126-330 74-271 (722)
30 KOG3207 Beta-tubulin folding c 99.2 1.6E-12 3.5E-17 119.9 0.7 207 148-356 118-340 (505)
31 KOG1909 Ran GTPase-activating 99.2 2.5E-12 5.5E-17 115.5 0.7 229 80-308 31-311 (382)
32 PLN03150 hypothetical protein; 99.2 4.1E-11 8.9E-16 122.2 8.2 110 128-237 419-529 (623)
33 PF14580 LRR_9: Leucine-rich r 99.1 7E-11 1.5E-15 99.5 4.1 105 103-212 19-126 (175)
34 KOG1259 Nischarin, modulator o 99.1 4E-11 8.6E-16 105.8 1.9 221 79-308 182-412 (490)
35 PF14580 LRR_9: Leucine-rich r 99.1 1.8E-10 3.8E-15 97.1 5.4 101 199-302 42-147 (175)
36 KOG1259 Nischarin, modulator o 99.1 3.1E-11 6.7E-16 106.5 0.6 202 122-332 209-412 (490)
37 KOG0531 Protein phosphatase 1, 99.1 1.6E-11 3.5E-16 119.7 -1.5 246 100-359 69-322 (414)
38 KOG4658 Apoptotic ATPase [Sign 99.0 1.6E-10 3.5E-15 120.6 5.4 249 80-333 546-808 (889)
39 KOG4658 Apoptotic ATPase [Sign 99.0 3.6E-10 7.8E-15 118.0 4.1 200 103-308 523-730 (889)
40 KOG0531 Protein phosphatase 1, 98.9 1.3E-10 2.9E-15 113.3 -2.8 219 124-355 69-290 (414)
41 PF13855 LRR_8: Leucine rich r 98.9 2.2E-09 4.8E-14 74.4 3.8 61 271-331 1-61 (61)
42 PF13855 LRR_8: Leucine rich r 98.9 1.9E-09 4.1E-14 74.7 3.2 59 104-162 2-60 (61)
43 KOG2982 Uncharacterized conser 98.6 3.7E-09 8.1E-14 93.4 -0.7 87 101-187 69-158 (418)
44 COG5238 RNA1 Ran GTPase-activa 98.5 1.5E-08 3.3E-13 88.5 0.0 211 100-310 27-287 (388)
45 KOG2120 SCF ubiquitin ligase, 98.5 3.4E-09 7.5E-14 93.7 -5.4 200 175-377 185-399 (419)
46 KOG2120 SCF ubiquitin ligase, 98.4 4.6E-09 1E-13 92.9 -6.0 177 128-306 186-374 (419)
47 KOG1859 Leucine-rich repeat pr 98.4 7.4E-09 1.6E-13 101.7 -5.6 179 96-284 102-292 (1096)
48 KOG2982 Uncharacterized conser 98.4 1E-07 2.2E-12 84.6 1.4 84 126-209 70-156 (418)
49 KOG1859 Leucine-rich repeat pr 98.4 4.4E-09 9.6E-14 103.2 -7.9 103 200-308 165-267 (1096)
50 KOG4579 Leucine-rich repeat (L 98.3 3.3E-08 7.1E-13 77.7 -4.1 111 246-359 52-163 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.2 2.6E-07 5.6E-12 81.0 0.5 36 125-160 28-67 (388)
52 KOG4579 Leucine-rich repeat (L 98.1 2.3E-07 5E-12 73.0 -3.0 102 83-188 31-136 (177)
53 KOG1644 U2-associated snRNP A' 97.9 1.7E-05 3.7E-10 66.9 5.0 102 129-232 44-149 (233)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 50.9 3.0 36 296-332 2-37 (44)
55 PRK15386 type III secretion pr 97.8 0.00012 2.7E-09 69.6 10.1 15 102-116 51-65 (426)
56 PRK15386 type III secretion pr 97.8 6.1E-05 1.3E-09 71.6 8.1 75 123-210 48-123 (426)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 50.1 3.3 36 104-140 2-37 (44)
58 KOG1644 U2-associated snRNP A' 97.8 4.7E-05 1E-09 64.3 5.6 86 221-306 62-151 (233)
59 KOG3665 ZYG-1-like serine/thre 97.6 3.9E-05 8.6E-10 78.8 4.0 81 174-256 147-229 (699)
60 KOG3665 ZYG-1-like serine/thre 97.6 5E-05 1.1E-09 78.0 3.8 149 175-325 122-281 (699)
61 PF13306 LRR_5: Leucine rich r 97.4 0.00039 8.5E-09 55.8 6.4 83 99-184 8-90 (129)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00034 7.4E-09 56.1 6.0 107 121-232 6-112 (129)
63 KOG2739 Leucine-rich acidic nu 97.4 0.00012 2.5E-09 64.4 2.7 64 147-212 61-129 (260)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.3E-09 63.7 2.3 110 95-206 35-150 (260)
65 PF08263 LRRNT_2: Leucine rich 97.1 0.0011 2.4E-08 41.9 4.2 36 28-73 2-43 (43)
66 KOG4341 F-box protein containi 96.6 0.00013 2.8E-09 68.1 -3.7 286 66-353 124-437 (483)
67 KOG2123 Uncharacterized conser 96.2 0.00027 5.9E-09 62.6 -4.0 100 102-205 18-123 (388)
68 KOG4308 LRR-containing protein 96.2 2.8E-05 6.1E-10 76.4 -11.3 277 81-357 89-447 (478)
69 KOG2123 Uncharacterized conser 96.1 0.00027 5.9E-09 62.7 -4.3 80 174-257 18-98 (388)
70 KOG1947 Leucine rich repeat pr 95.7 0.0012 2.7E-08 65.7 -2.5 15 292-306 359-373 (482)
71 KOG4308 LRR-containing protein 95.4 0.00011 2.4E-09 72.3 -10.9 110 151-260 87-217 (478)
72 KOG4341 F-box protein containi 95.3 0.00061 1.3E-08 63.8 -5.8 253 78-332 163-439 (483)
73 KOG1947 Leucine rich repeat pr 95.1 0.0019 4.1E-08 64.4 -3.4 32 266-297 357-389 (482)
74 PF00560 LRR_1: Leucine Rich R 94.9 0.0093 2E-07 31.4 0.5 11 130-140 3-13 (22)
75 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.9E-07 30.8 0.8 12 297-308 2-13 (22)
76 KOG0473 Leucine-rich repeat pr 94.2 0.0013 2.8E-08 56.9 -6.0 88 98-188 37-124 (326)
77 PF13504 LRR_7: Leucine rich r 93.1 0.055 1.2E-06 26.4 1.1 13 343-355 2-14 (17)
78 KOG0473 Leucine-rich repeat pr 90.5 0.011 2.3E-07 51.4 -5.2 88 122-212 37-124 (326)
79 KOG3864 Uncharacterized conser 88.8 0.059 1.3E-06 45.9 -1.9 33 201-233 103-135 (221)
80 KOG3864 Uncharacterized conser 88.0 0.071 1.5E-06 45.5 -2.0 33 81-113 103-135 (221)
81 smart00369 LRR_TYP Leucine-ric 85.9 0.58 1.3E-05 25.5 1.6 13 128-140 3-15 (26)
82 smart00370 LRR Leucine-rich re 85.9 0.58 1.3E-05 25.5 1.6 13 128-140 3-15 (26)
83 smart00369 LRR_TYP Leucine-ric 85.7 0.6 1.3E-05 25.4 1.6 16 151-166 2-17 (26)
84 smart00370 LRR Leucine-rich re 85.7 0.6 1.3E-05 25.4 1.6 16 151-166 2-17 (26)
85 PF13516 LRR_6: Leucine Rich r 85.2 0.17 3.8E-06 27.0 -0.8 15 342-356 2-16 (24)
86 smart00364 LRR_BAC Leucine-ric 79.5 1.2 2.7E-05 24.4 1.2 18 342-360 2-19 (26)
87 smart00368 LRR_RI Leucine rich 69.6 3.7 7.9E-05 22.9 1.6 14 342-355 2-15 (28)
88 smart00365 LRR_SD22 Leucine-ri 69.3 4.2 9.1E-05 22.3 1.7 14 319-332 2-15 (26)
89 PF07172 GRP: Glycine rich pro 64.8 6.3 0.00014 29.5 2.5 20 1-21 1-20 (95)
90 KOG3763 mRNA export factor TAP 58.1 4.7 0.0001 40.0 1.0 63 269-333 216-284 (585)
91 KOG4242 Predicted myosin-I-bin 51.7 55 0.0012 32.2 6.9 109 224-332 355-481 (553)
92 KOG3763 mRNA export factor TAP 45.9 9.6 0.00021 37.9 1.0 62 246-309 217-284 (585)
93 KOG4242 Predicted myosin-I-bin 37.6 61 0.0013 31.9 4.9 198 151-351 165-389 (553)
94 PRK10299 PhoPQ regulatory prot 33.8 45 0.00098 21.0 2.2 19 1-19 1-19 (47)
95 smart00367 LRR_CC Leucine-rich 32.1 31 0.00066 18.5 1.2 11 127-137 2-12 (26)
96 PF05725 FNIP: FNIP Repeat; I 23.3 1.4E+02 0.0029 18.5 3.2 8 342-349 34-41 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-41 Score=362.76 Aligned_cols=336 Identities=31% Similarity=0.521 Sum_probs=242.4
Q ss_pred CCCHHHHHHHHHHHHhcCCC----CCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCcceeEEEEeecCcccccCChhhh
Q 014726 25 STDSAEVDALNKLIDYWNLR----SKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGELPSELF 100 (419)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~----~~w~~~~~d~c~~~~~w~~~~~~~~~~c~~~~~~~~v~~L~l~~~~l~~~~p~~l~ 100 (419)
..+++|.+||..|++.+..+ ..|+.. .|+|. | .|+.|+. .++|+.|+++++.+.|.++..+.
T Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~----w------~gv~c~~---~~~v~~L~L~~~~i~~~~~~~~~ 90 (968)
T PLN00113 25 MLHAEELELLLSFKSSINDPLKYLSNWNSS-ADVCL----W------QGITCNN---SSRVVSIDLSGKNISGKISSAIF 90 (968)
T ss_pred CCCHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCc----C------cceecCC---CCcEEEEEecCCCccccCChHHh
Confidence 44668999999999988543 568654 68897 9 7899973 34899999999999999999999
Q ss_pred CCCCCCEEECcCCcCCccCCccc-cCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccc
Q 014726 101 MLRKLMDLNLGQNVLNGSIPAEI-GQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (419)
Q Consensus 101 ~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (419)
.+++|++|+|++|.+++.+|..+ ..+++|++|++++|.+++.+|. +.+++|++|++++|.+++..|..++.+++|++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 99999999999999988888765 4888888888888888776664 34677777777777777777777777777777
Q ss_pred eecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCC
Q 014726 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (419)
Q Consensus 180 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 259 (419)
|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|++++|.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 77777777777777777777777777777777777777777777777777777777766777777777777777777766
Q ss_pred CCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC
Q 014726 260 EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 339 (419)
Q Consensus 260 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 339 (419)
....+..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 65555666666666777776666666666666666666666666666666666666666666666666666665555443
Q ss_pred -CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCc
Q 014726 340 -IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSI 376 (419)
Q Consensus 340 -~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~ 376 (419)
.+++|+.|++++|.+++.+|..+.. ..++ +++.+|++
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 2555666666666666555555544 4443 33444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.7e-36 Score=321.47 Aligned_cols=296 Identities=33% Similarity=0.526 Sum_probs=161.1
Q ss_pred eEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccc
Q 014726 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (419)
Q Consensus 81 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (419)
++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 34444444444444555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccch
Q 014726 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (419)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (419)
|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCC
Q 014726 241 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 320 (419)
Q Consensus 241 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 320 (419)
..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+..+++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 55555555555555555555444445555555566666655555555555555555555555555555555555544455
Q ss_pred CcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCc
Q 014726 321 LQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSI 376 (419)
Q Consensus 321 L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~ 376 (419)
|+.|++++|++.+.+|..+ .+++|+.|++++|.+++.+|..|.. +.++ +++.+|++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence 5555555555554444333 2455556666666655555555544 4443 33444433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-32 Score=258.81 Aligned_cols=299 Identities=22% Similarity=0.227 Sum_probs=202.0
Q ss_pred cceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceee
Q 014726 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 157 (419)
.+|++.|+|..|-+...-..++..++.|++|||+.|.++...-..|..-.++++|+|++|+|+..-...|..+.+|.+|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 46899999999888777777888999999999999999844444577767899999999999977778899999999999
Q ss_pred ccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcc
Q 014726 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (419)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (419)
|++|+++...+..|.++++|+.|+|..|++...---.|..+++|+.|.|..|.+...-...|..+.++++|+|..|+++.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 99999987777778889999999999988874334456777777777777777665555666666666666666666665
Q ss_pred cchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccC
Q 014726 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (419)
Q Consensus 238 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 317 (419)
.-..++.+++.|+.|+++.|.+.....+.++..++|++|+|+.|+++...+..|..+..|++|+|++|+++..-...|..
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 55556666666666666666666666666666666666666666666545555555555666666666555444444555
Q ss_pred CCCCcEEEccCCcCcccCCCCC----CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCc
Q 014726 318 LSTLQYLYLGNNNLSGELPVNI----IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSI 376 (419)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~----~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~ 376 (419)
+++|++|||++|.+.+.+.... .+++|+.|++.+|++....-..|.+ ..|. +++-+|.+
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 5555555555555554443211 2455555555555555332334444 4444 33333333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=6.1e-32 Score=253.80 Aligned_cols=327 Identities=20% Similarity=0.160 Sum_probs=275.9
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
..++.|||+.|.++..--++|..=.++++|+|++|.|+..-...|..+.+|.+|.|+.|+++...+..|..+++|+.|+|
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 46788999999887655566777789999999999999777888999999999999999999555568888999999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
..|++....--.|.++++|+.|.+..|.+...-...|..+.++++|+|+.|+++..-.+++.++++|+.|+++.|.+...
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 99999755456789999999999999999987778899999999999999999988889999999999999999999988
Q ss_pred chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCc---cc
Q 014726 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPT---SL 315 (419)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~---~~ 315 (419)
-++.+...++|+.|+|+.|.++......|..+..|++|+|++|.+...-...|..+++|++|||++|.+...+.+ .|
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 889999999999999999999999999999999999999999999876677888999999999999999865543 57
Q ss_pred cCCCCCcEEEccCCcCcccCCCCC--CCCCccEEEcccCCCcccCCcccccCCce-eEeecCCcccCCCcccccchhhh-
Q 014726 316 QDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFAKGGLS-MNVIGSSINANNLQDGKALGMMQ- 391 (419)
Q Consensus 316 ~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~-~~~~~n~~~~~~~~~~~p~~~~~- 391 (419)
.++++|+.|++.+|++. .||... .+++|+.|||.+|.+...-|+.|.+..|+ +.+...++..+-...++++++.+
T Consensus 389 ~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~ 467 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRR 467 (873)
T ss_pred ccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhc
Confidence 78999999999999998 676543 48999999999999998888888775554 44444555554444556666655
Q ss_pred ccccCCcCCCCCCCC
Q 014726 392 CLHSNTKCSNKVPSC 406 (419)
Q Consensus 392 ~~~~~~~c~~~~~~~ 406 (419)
..+....-.|.+|.+
T Consensus 468 ~lq~sv~a~CayPe~ 482 (873)
T KOG4194|consen 468 KLQSSVIAKCAYPEP 482 (873)
T ss_pred ccccceeeeccCCcc
Confidence 233333334444544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.3e-30 Score=246.77 Aligned_cols=293 Identities=26% Similarity=0.354 Sum_probs=245.0
Q ss_pred CCcceeEEEEeecCccc-ccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccc
Q 014726 76 SNSCHITHLKIYALDIM-GELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLI 154 (419)
Q Consensus 76 ~~~~~v~~L~l~~~~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 154 (419)
+..+-|+.+++++|+++ +.+|.....++.++.|.|....+. .+|..++.+.+|++|.+.+|++. .+-..++.++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 44567899999999998 578999999999999999999887 89999999999999999999998 6667788999999
Q ss_pred eeeccccccC-CCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCC
Q 014726 155 SLSFSSNNFF-GPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT 233 (419)
Q Consensus 155 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 233 (419)
.+++..|++. .-+|..+..+..|..|+|++|++. ..|..+..-+++-.|+|++|+|..+....+.+++.|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9999999876 446778889999999999999998 78888999999999999999998665567788999999999999
Q ss_pred cCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCc-ccCCccccCCCCCCEEEeecCcccccCC
Q 014726 234 LLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS-GKIPDQLGTFAKLQLLDLSFNKLTGQIP 312 (419)
Q Consensus 234 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p 312 (419)
++. .+|..+..+.+|++|.|++|.+.......+..+.+|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 987 67778899999999999999887666666667778888888887644 357888888888999999999888 888
Q ss_pred ccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCceeEeecCC
Q 014726 313 TSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLSMNVIGSS 375 (419)
Q Consensus 313 ~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~~~~~~n~ 375 (419)
+.+..+++|+.|+|++|+|+. +.... ...+|++|++|.|+++ .+|+.+++ ++++-++.+||
T Consensus 239 ecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred HHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccC
Confidence 888888899999999998883 33222 3578888888888888 78888887 77764444444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=8.9e-29 Score=234.30 Aligned_cols=304 Identities=23% Similarity=0.306 Sum_probs=214.1
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCC-CCCCCCcccCCccceee
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT-GRVPTELGNLTKLISLS 157 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~ 157 (419)
.+++-|.|....+. .+|..++.+.+|+.|.+++|++. .+-..++.++.|+.+.+++|++. .-+|..+..+..|..||
T Consensus 32 t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 46777777776653 78888888888888888888887 56667788888888888888776 34677777888888888
Q ss_pred ccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcc
Q 014726 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (419)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (419)
||+|++. ..|..+..-+++-.|+|++|++..+....|-++..|-.|||++|++. .+|..+..+..|++|.+++|.+..
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhH
Confidence 8888887 66777888888888888888887433345677888888888888887 566677778888888888887764
Q ss_pred cchhhcccCCCCCeEEcCCCCCCCC-CchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCcccc
Q 014726 238 PIPRSFRALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ 316 (419)
Q Consensus 238 ~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 316 (419)
..-..+..+++|+.|.+++.+-+.. .+..+..+.+|..+|+|.|.+. .+|+.+..+++|+.|+|++|+|+ .+....+
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~ 265 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG 265 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH
Confidence 4444455566667777766544333 4556666777777777777776 67777777777777777777776 4444455
Q ss_pred CCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcc-cCCccccc-CCceeEeecCCcccCCCcccccchhhhcc
Q 014726 317 DLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSG-NLPRNFAK-GGLSMNVIGSSINANNLQDGKALGMMQCL 393 (419)
Q Consensus 317 ~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~-~~p~~~~~-~~l~~~~~~n~~~~~~~~~~~p~~~~~~~ 393 (419)
...+|++|+++.|+++ .+|..+ .+++|+.|.+.+|+++- -+|..+.+ ..+.+....||.. ..+|.++++|.
T Consensus 266 ~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-----ElVPEglcRC~ 339 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-----ELVPEGLCRCV 339 (1255)
T ss_pred HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-----ccCchhhhhhH
Confidence 5567777777777776 566554 36677777777777642 25655555 5555555555444 24676776654
Q ss_pred c
Q 014726 394 H 394 (419)
Q Consensus 394 ~ 394 (419)
.
T Consensus 340 k 340 (1255)
T KOG0444|consen 340 K 340 (1255)
T ss_pred H
Confidence 3
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=8e-26 Score=204.22 Aligned_cols=243 Identities=28% Similarity=0.461 Sum_probs=205.3
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
..++.+++..+.+. ++|++++++..++.++.++|++. ++|..++.+..|+.++.++|.+. .+|+.++.+..|+.++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 35778888888775 78888999999999999999987 88989999999999999999988 78888888999999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
.+|+++ ..|..+.++.+|..+++.+|++....|..+ +++.|+.|+...|.+. .+|+.++.+.+|.-|++..|++. .
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 999987 667788888899999999999885444444 4888999998888776 77888888999999999999887 4
Q ss_pred chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCC
Q 014726 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (419)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 318 (419)
.| .|..+..|++|+++.|.+...+......++++.+||+.+|+++ +.|..+.-+.+|+.||+++|.|+ ..|..++++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 56 7888888999999888888777777788899999999999988 78888888888999999999998 677888888
Q ss_pred CCCcEEEccCCcCc
Q 014726 319 STLQYLYLGNNNLS 332 (419)
Q Consensus 319 ~~L~~L~L~~N~l~ 332 (419)
.|+.|-+.+|.+.
T Consensus 298 -hL~~L~leGNPlr 310 (565)
T KOG0472|consen 298 -HLKFLALEGNPLR 310 (565)
T ss_pred -eeeehhhcCCchH
Confidence 8888888888653
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.7e-21 Score=208.53 Aligned_cols=287 Identities=20% Similarity=0.250 Sum_probs=165.0
Q ss_pred cceeEEEEeecCc------ccccCChhhhCCC-CCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccC
Q 014726 78 SCHITHLKIYALD------IMGELPSELFMLR-KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 150 (419)
Q Consensus 78 ~~~v~~L~l~~~~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 150 (419)
..+++.|.+.... +...+|..+..++ +|+.|++.++.++ .+|..| ...+|++|+++++.+. .+|..+..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccC
Confidence 3455555554331 2233455554443 3566666655554 445444 3455666666665554 445555555
Q ss_pred CccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeec
Q 014726 151 TKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 230 (419)
Q Consensus 151 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 230 (419)
++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ .+++|+.|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 566666665544333444 24555556666665554444555555555566666665544333444333 3455555555
Q ss_pred cCCcCcccchhhcccCCCCCeEEcCCCCCCCCC-----------------------------chhhcCCCCCCEEeccCC
Q 014726 231 QGTLLEGPIPRSFRALNKLEDLRIGDLSAEDST-----------------------------LDFLESQKSLSILSLRNC 281 (419)
Q Consensus 231 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-----------------------------~~~~~~~~~L~~L~Ls~n 281 (419)
++|...+.+|.. ..+|+.|+++++.+...+ ......+++|+.|++++|
T Consensus 712 sgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 712 SGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 554333233321 233444444444322211 111223467888899888
Q ss_pred cCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCcc
Q 014726 282 RVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRN 361 (419)
Q Consensus 282 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~ 361 (419)
...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|++|+|++|.++ .+|..
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~s 864 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWW 864 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHH
Confidence 7777888888899999999999876555777665 6788889999888766566532 367888888888887 57777
Q ss_pred ccc-CCce-eEeecCCc
Q 014726 362 FAK-GGLS-MNVIGSSI 376 (419)
Q Consensus 362 ~~~-~~l~-~~~~~n~~ 376 (419)
+.. +.++ +.+.+++.
T Consensus 865 i~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred HhcCCCCCEEECCCCCC
Confidence 666 6665 44555333
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=4.6e-25 Score=199.34 Aligned_cols=263 Identities=28% Similarity=0.402 Sum_probs=232.6
Q ss_pred eEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccc
Q 014726 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (419)
Q Consensus 81 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (419)
+..+.++.|++. .+-+.+.++..+.+|++.+|.+. ..|.+++++..++.++.++|.++ .+|..+..+.+|+.++.+.
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 567778888765 55567899999999999999998 88999999999999999999998 8999999999999999999
Q ss_pred cccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccch
Q 014726 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (419)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (419)
|.+. ..|+.++.+..|+.++..+|++. ..|..+..+.+|..+++.+|++....|..+. ++.|++|+...|.++ .+|
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence 9998 66778889999999999999998 7888899999999999999999966666665 999999999999876 789
Q ss_pred hhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCcccc-CCCCCCEEEeecCcccccCCccccCCC
Q 014726 241 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLG-TFAKLQLLDLSFNKLTGQIPTSLQDLS 319 (419)
Q Consensus 241 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~ 319 (419)
..++.+.+|+.|++..|.+...+ .|.++..|+++.++.|++. .+|.+.. .++++..||+.+|++. ..|..+..+.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 99999999999999999988755 7889999999999999998 7777654 8999999999999998 8899999999
Q ss_pred CCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCc
Q 014726 320 TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLS 355 (419)
Q Consensus 320 ~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~ 355 (419)
+|++||+++|.|++ +|.....-.|+.|-+.+|++.
T Consensus 276 sL~rLDlSNN~is~-Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 276 SLERLDLSNNDISS-LPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred hhhhhcccCCcccc-CCcccccceeeehhhcCCchH
Confidence 99999999999995 554554338999999999986
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=3.2e-21 Score=195.64 Aligned_cols=263 Identities=26% Similarity=0.341 Sum_probs=198.0
Q ss_pred eEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccc
Q 014726 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (419)
Q Consensus 81 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (419)
-..|+++.+++. .+|+.+. ++|+.|++.+|.++ .+|. .+++|++|++++|+++ .+|.. .++|++|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 456888898887 6787775 48999999999998 5665 3578999999999998 55643 46889999999
Q ss_pred cccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccch
Q 014726 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (419)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (419)
|.+. .+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 9887 34442 257889999999988 45542 4789999999999985 3432 3468888999998874 55
Q ss_pred hhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCC
Q 014726 241 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 320 (419)
Q Consensus 241 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 320 (419)
.. ..+|+.|++++|.+...+. ..++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCCCCC----CCcccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccC
Confidence 32 2578999999998876432 2467888999999988 46653 357899999999998 46643 357
Q ss_pred CcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcccCCCcccccchhhh
Q 014726 321 LQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINANNLQDGKALGMMQ 391 (419)
Q Consensus 321 L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~~~~~~~~~p~~~~~ 391 (419)
|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.. ..+. +++.+|++.+ .+|..+..
T Consensus 404 L~~LdLS~N~Ls-sIP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~-----~~~~~L~~ 467 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE-----RTLQALRE 467 (788)
T ss_pred CCEEEccCCcCC-CCCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc-----hHHHHHHH
Confidence 999999999998 46742 357888999999998 78888877 6655 7777777764 45555533
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=4e-20 Score=200.52 Aligned_cols=298 Identities=20% Similarity=0.197 Sum_probs=226.3
Q ss_pred ceeEEEEeecCccc--ccCChhhhCCCCCCEEECcCCcC------CccCCccccCCC-CCcEeecccCcCCCCCCCCccc
Q 014726 79 CHITHLKIYALDIM--GELPSELFMLRKLMDLNLGQNVL------NGSIPAEIGQLS-NMQYLSLGINNFTGRVPTELGN 149 (419)
Q Consensus 79 ~~v~~L~l~~~~l~--~~~p~~l~~l~~L~~L~L~~n~l------~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~ 149 (419)
.+++.+.+....+. ..-+.+|..+++|+.|.+..+.. ...+|..|..++ +|+.|++.++.+. .+|..| .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 35665555433332 12345689999999999976542 234677777664 6999999999987 788877 4
Q ss_pred CCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceee
Q 014726 150 LTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLR 229 (419)
Q Consensus 150 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 229 (419)
..+|++|++++|++. .++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 789999999999986 5677788999999999998876556774 88899999999999987778999999999999999
Q ss_pred ccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccc------------------
Q 014726 230 LQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQL------------------ 291 (419)
Q Consensus 230 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~------------------ 291 (419)
+++|...+.+|..+ ++++|+.|++++|......+. ...+|++|++++|.+. .+|..+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccccccccccccccccchhhc
Confidence 99986556777665 789999999999865433322 2467889999998876 455422
Q ss_pred ------------cCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCC
Q 014726 292 ------------GTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLP 359 (419)
Q Consensus 292 ------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p 359 (419)
..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|....+++|+.|++++|.....+|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 12357888889888877789999999999999999998777788877778999999999988655666
Q ss_pred cccccCCce-eEeecCCcccCCCcccccchhhhcc
Q 014726 360 RNFAKGGLS-MNVIGSSINANNLQDGKALGMMQCL 393 (419)
Q Consensus 360 ~~~~~~~l~-~~~~~n~~~~~~~~~~~p~~~~~~~ 393 (419)
... .+++ +++.+|.+. .+|.++..+.
T Consensus 843 ~~~--~nL~~L~Ls~n~i~------~iP~si~~l~ 869 (1153)
T PLN03210 843 DIS--TNISDLNLSRTGIE------EVPWWIEKFS 869 (1153)
T ss_pred ccc--cccCEeECCCCCCc------cChHHHhcCC
Confidence 432 3343 556666554 3665555443
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=5.3e-23 Score=203.35 Aligned_cols=108 Identities=32% Similarity=0.471 Sum_probs=62.6
Q ss_pred hhhcCCCCCCEEeccCCcCcccCCc-cccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCC
Q 014726 265 DFLESQKSLSILSLRNCRVSGKIPD-QLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPN 343 (419)
Q Consensus 265 ~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 343 (419)
..+.++..|+.|+|++|++. .+|. .+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++. ..|+...++.
T Consensus 377 p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~q 453 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQ 453 (1081)
T ss_pred hhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCc
Confidence 34445566666666666666 3333 4556666666666666666 55565555555555555555555 4554445677
Q ss_pred ccEEEcccCCCccc-CCcccccCCce-eEeecCC
Q 014726 344 LIALDVSYNPLSGN-LPRNFAKGGLS-MNVIGSS 375 (419)
Q Consensus 344 L~~L~Ls~N~l~~~-~p~~~~~~~l~-~~~~~n~ 375 (419)
|+.+|+|.|.|+.. +|...-.++|+ +++.+|.
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777777777532 33322224554 5666665
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=3.7e-23 Score=186.75 Aligned_cols=251 Identities=23% Similarity=0.242 Sum_probs=159.7
Q ss_pred CCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccc-cccCCCCChhccCCCCccceec
Q 014726 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS-NNFFGPLPKELGKLTSLQQLYI 182 (419)
Q Consensus 104 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 182 (419)
....++|..|.|+...+.+|+.+++|++|||++|.|+.+.|++|.++++|..|.+.+ |+|+......|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 566788888888866667788888899999999888888888888888887777766 8888666667888888888888
Q ss_pred ccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc------------ccchhhcccCCCCC
Q 014726 183 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE------------GPIPRSFRALNKLE 250 (419)
Q Consensus 183 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~ 250 (419)
.-|++.-...+.|..+++|..|.+.+|.+.......|..+.+++.+.+..|.+- ...|..++...-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 888888777788888888888888888887555557778888888888777632 11122222221111
Q ss_pred eEEcCCCCCC--------------------------CCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeec
Q 014726 251 DLRIGDLSAE--------------------------DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSF 304 (419)
Q Consensus 251 ~L~L~~n~~~--------------------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 304 (419)
...+.+.++. .-+...|..+++|++|+|++|+++++-+.+|.....+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 1111111111 11233455555555555555555555555555555555555555
Q ss_pred CcccccCCccccCCCCCcEEEccCCcCcccCCCCCC-CCCccEEEcccCCC
Q 014726 305 NKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPL 354 (419)
Q Consensus 305 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~~~L~~L~Ls~N~l 354 (419)
|++.......|.++..|+.|+|.+|+|+...|..+. +..|.+|+|-.|++
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 555544444455555555555555555544343331 34555555555554
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=3e-20 Score=189.55 Aligned_cols=320 Identities=19% Similarity=0.260 Sum_probs=221.8
Q ss_pred ccCCCHHHHHHHHHHHHhcCCC-------CCCCCCCCCCCCCCCCCC------CCCCCCCeeecCCCCcceeEEEEeecC
Q 014726 23 QTSTDSAEVDALNKLIDYWNLR-------SKINLTTIDPCTRNASWA------SENANPRVACDCTSNSCHITHLKIYAL 89 (419)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~-------~~w~~~~~d~c~~~~~w~------~~~~~~~~~c~~~~~~~~v~~L~l~~~ 89 (419)
.+.+.++|.+.+.+..+.+..+ ..|+.. .|.|.....-. .......|.|.. ..|+++.+.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~~~~~~~~~l~~~~~~~~~tv~~~~----~~vt~l~~~g~ 131 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCILSENSQEILSIVFNTEGYTVEGGG----KSVTYTRVTES 131 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC-CcccccCCcchhhheeeecCCceEEecCC----Ccccccccccc
Confidence 3457788999999888877654 448766 78886221000 011223455642 25677766543
Q ss_pred ccccc---------------------CC-------hhh-----hCCCCCCEEECcCCcCCccCCccccCCCCCcEeeccc
Q 014726 90 DIMGE---------------------LP-------SEL-----FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGI 136 (419)
Q Consensus 90 ~l~~~---------------------~p-------~~l-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 136 (419)
..... .+ ..+ .-..+...|+++++.++ .+|..+. +.|++|++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 132 EQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDN 208 (754)
T ss_pred cccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecC
Confidence 22110 00 011 11245788999998888 5776553 4799999999
Q ss_pred CcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCc
Q 014726 137 NNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP 216 (419)
Q Consensus 137 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 216 (419)
|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP 278 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLP 278 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccc
Confidence 9998 5666554 58999999999987 4566554 47999999999988 6776664 58999999999988 456
Q ss_pred hhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCC
Q 014726 217 EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAK 296 (419)
Q Consensus 217 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 296 (419)
..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.+...+.. ..++|+.|++++|.++ .+|..+. ++
T Consensus 279 ~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~---l~~sL~~L~Ls~N~Lt-~LP~~l~--~s 347 (754)
T PRK15370 279 ENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPET---LPPGLKTLEAGENALT-SLPASLP--PE 347 (754)
T ss_pred cccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCcc---ccccceeccccCCccc-cCChhhc--Cc
Confidence 5543 589999999998884 554442 4788899999888754322 2368999999999988 4676554 78
Q ss_pred CCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCccccc-----CC-ceeE
Q 014726 297 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-----GG-LSMN 370 (419)
Q Consensus 297 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-----~~-l~~~ 370 (419)
|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+ ...|+.|++++|+++ .+|..+.. +. ..++
T Consensus 348 L~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l-~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 348 LQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL-PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred ccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH-HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence 999999999988 5676553 68999999999998 566543 347889999999998 56655432 22 3477
Q ss_pred eecCCcc
Q 014726 371 VIGSSIN 377 (419)
Q Consensus 371 ~~~n~~~ 377 (419)
+.+|++.
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 7778775
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.9e-22 Score=199.52 Aligned_cols=243 Identities=28% Similarity=0.363 Sum_probs=186.4
Q ss_pred CCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecc
Q 014726 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 183 (419)
Q Consensus 104 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 183 (419)
+|++++++.|.++ .+|++++.+.+|+.++..+|.++ .+|..+..+.+|+.|.+..|.+. -+|.....++.|++|+|.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 6677777777776 45566777777777777777775 66666666677777777777665 445555666777777777
Q ss_pred cccccccCChh-hcCCCC-CcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCC
Q 014726 184 SSGVTGSIPQE-FANLKS-LRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261 (419)
Q Consensus 184 ~n~l~~~~~~~-~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 261 (419)
.|.+. .+|+. +..... |+.|..+.|.+.......=...+.|+.|++.+|.++...-..+.+..+|+.|+|++|++..
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 77766 34432 222222 5556666665553222222346789999999999998888899999999999999999999
Q ss_pred CCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcc-cCCCCCC
Q 014726 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG-ELPVNII 340 (419)
Q Consensus 262 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~ 340 (419)
.+...+.+++.|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++. .+|....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 99999999999999999999999 78899999999999999999998 778 78899999999999999974 3354444
Q ss_pred CCCccEEEcccCC
Q 014726 341 APNLIALDVSYNP 353 (419)
Q Consensus 341 ~~~L~~L~Ls~N~ 353 (419)
.++|++|||++|.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 5899999999998
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=5.8e-20 Score=186.55 Aligned_cols=243 Identities=26% Similarity=0.324 Sum_probs=192.1
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|.+..|.++. +|. ..++|++|++++|.++ .+|.. .++|++|++++|.++ .+|..+ .+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence 368999999998864 554 2579999999999998 56643 468999999999998 555533 57889999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
++|+++ .+|. ..++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|++++
T Consensus 290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 290 FGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS- 356 (788)
T ss_pred cCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-
Confidence 999998 4454 24789999999999985 5542 2468899999999984 4432 2579999999999984
Q ss_pred chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCC
Q 014726 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (419)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 318 (419)
+|.. ..+|+.|++++|.+...+. ...+|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|.. .
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~ 421 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---P 421 (788)
T ss_pred CCCC---CcccceehhhccccccCcc----cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---h
Confidence 5543 3578889999998875432 2367999999999998 46643 368999999999998 56753 3
Q ss_pred CCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccc
Q 014726 319 STLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNF 362 (419)
Q Consensus 319 ~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~ 362 (419)
.+|+.|++++|+++ .+|..+ .+++|+.|+|++|+|++..|..+
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 47899999999998 788766 47899999999999999988766
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=6.6e-22 Score=186.54 Aligned_cols=272 Identities=22% Similarity=0.236 Sum_probs=175.9
Q ss_pred EEEeecCccc-ccCChhhhCCCCCCEEECcCCcCCcc----CCccccCCCCCcEeecccCcCCC------CCCCCcccCC
Q 014726 83 HLKIYALDIM-GELPSELFMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGINNFTG------RVPTELGNLT 151 (419)
Q Consensus 83 ~L~l~~~~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~ 151 (419)
.|+|..+.+. +.....+..++.|++|+++++.++.. ++..+...+.|++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3555566665 34445566677788888888887543 45556677778888888887652 2234556677
Q ss_pred ccceeeccccccCCCCChhccCCCC---ccceecccccccc----cCChhhcCC-CCCcEEEccCCcCCCC----Cchhh
Q 014726 152 KLISLSFSSNNFFGPLPKELGKLTS---LQQLYIDSSGVTG----SIPQEFANL-KSLRILWASDNLFTGK----IPEFF 219 (419)
Q Consensus 152 ~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l 219 (419)
+|++|++++|.+.+..+..+..+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. +...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888877655555555544 8888888887763 233445566 7888888888888743 23345
Q ss_pred cCccccceeeccCCcCccc----chhhcccCCCCCeEEcCCCCCCCCC----chhhcCCCCCCEEeccCCcCcccCCccc
Q 014726 220 GTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDST----LDFLESQKSLSILSLRNCRVSGKIPDQL 291 (419)
Q Consensus 220 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 291 (419)
..+++|++|++++|.+++. ++..+...++|++|++++|.+.... ...+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5667788888888877732 3334555668888888877765442 2334566778888888887765222222
Q ss_pred c-----CCCCCCEEEeecCcccc----cCCccccCCCCCcEEEccCCcCccc----CCCCC-CC-CCccEEEcccCCC
Q 014726 292 G-----TFAKLQLLDLSFNKLTG----QIPTSLQDLSTLQYLYLGNNNLSGE----LPVNI-IA-PNLIALDVSYNPL 354 (419)
Q Consensus 292 ~-----~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~-~~-~~L~~L~Ls~N~l 354 (419)
. ..+.|+.|++++|.+++ .+...+..+++|+++++++|++... +.... .. +.|+++|+.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 23678888888887752 2233445557788888888887743 22112 12 5777777777764
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=9.5e-22 Score=177.69 Aligned_cols=255 Identities=21% Similarity=0.219 Sum_probs=207.8
Q ss_pred cceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeeccc-CcCCCCCCCCcccCCcccee
Q 014726 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGI-NNFTGRVPTELGNLTKLISL 156 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L 156 (419)
.+..+.++|..|+|+...|.+|+.+++|+.|||+.|.|+..-|++|.+++.|..|-+.+ |+|+...-+.|+++..|+.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 35788999999999877778899999999999999999988899999999988877766 89996555789999999999
Q ss_pred eccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCC------------CCchhhcCccc
Q 014726 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG------------KIPEFFGTLTE 224 (419)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~l~~l~~ 224 (419)
.+.-|++.-...+.|..+++|..|.+.+|.+...--.+|..+..++.+++..|.+.. ..+..++...-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 999999998888899999999999999999984333488889999999998876321 01111111111
Q ss_pred ----------------------ccee--ec-cCCcCccc-chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEec
Q 014726 225 ----------------------LADL--RL-QGTLLEGP-IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSL 278 (419)
Q Consensus 225 ----------------------L~~L--~l-~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L 278 (419)
++.+ .+ +.+...+. ....|+++++|+.|+|++|.++.....+|.+...+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111 11 11112222 2345889999999999999999999999999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCc
Q 014726 279 RNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 279 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
..|++...-...|.++..|+.|+|.+|+|+-..|..|..+..|.+|.|-.|.+.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999998766678899999999999999999889999999999999999988875
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.2e-19 Score=183.29 Aligned_cols=245 Identities=26% Similarity=0.451 Sum_probs=196.0
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecc
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 159 (419)
+.+.|++++++++ .+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 5688999988876 4665553 48999999999998 6776654 58999999999998 5676554 579999999
Q ss_pred ccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccc
Q 014726 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (419)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 239 (419)
+|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 99998 6676664 58999999999998 5777654 589999999999985 454432 579999999999984 5
Q ss_pred hhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCC
Q 014726 240 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319 (419)
Q Consensus 240 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 319 (419)
|..+ .++|+.|++++|.+...+. .+ .++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCccccCCh-hh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence 5444 2689999999998876432 22 379999999999998 5776553 79999999999998 6776654 3
Q ss_pred CCcEEEccCCcCcccCCCCC-----CCCCccEEEcccCCCc
Q 014726 320 TLQYLYLGNNNLSGELPVNI-----IAPNLIALDVSYNPLS 355 (419)
Q Consensus 320 ~L~~L~L~~N~l~~~~p~~~-----~~~~L~~L~Ls~N~l~ 355 (419)
.|+.|++++|++. .+|..+ ..+.+..|++.+|+++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 7999999999998 666543 2478899999999997
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=9.7e-20 Score=171.78 Aligned_cols=252 Identities=23% Similarity=0.261 Sum_probs=190.5
Q ss_pred eeEEEEeecCcccc----cCChhhhCCCCCCEEECcCCcCCc------cCCccccCCCCCcEeecccCcCCCCCCCCccc
Q 014726 80 HITHLKIYALDIMG----ELPSELFMLRKLMDLNLGQNVLNG------SIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 149 (419)
Q Consensus 80 ~v~~L~l~~~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 149 (419)
+++.|++.++.+.+ .++..+...+.++.++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 58899999998744 356667788899999999988762 23456778899999999999998656666655
Q ss_pred CCc---cceeeccccccCCC----CChhccCC-CCccceeccccccccc----CChhhcCCCCCcEEEccCCcCCCC---
Q 014726 150 LTK---LISLSFSSNNFFGP----LPKELGKL-TSLQQLYIDSSGVTGS----IPQEFANLKSLRILWASDNLFTGK--- 214 (419)
Q Consensus 150 l~~---L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~--- 214 (419)
+.+ |++|++++|+++.. +...+..+ ++|+.|++++|.+++. ++..+..+++|+.|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 555 99999999998732 23345666 8999999999998842 344567778999999999999853
Q ss_pred -CchhhcCccccceeeccCCcCccc----chhhcccCCCCCeEEcCCCCCCCCCchhhc-----CCCCCCEEeccCCcCc
Q 014726 215 -IPEFFGTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTLDFLE-----SQKSLSILSLRNCRVS 284 (419)
Q Consensus 215 -~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~~~L~~L~Ls~n~l~ 284 (419)
++..+...++|++|++++|.+++. +...+..+++|++|++++|.+.......+. ..+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 233455667999999999988743 345567789999999999988764222221 2479999999999987
Q ss_pred c----cCCccccCCCCCCEEEeecCccccc----CCccccCC-CCCcEEEccCCcC
Q 014726 285 G----KIPDQLGTFAKLQLLDLSFNKLTGQ----IPTSLQDL-STLQYLYLGNNNL 331 (419)
Q Consensus 285 ~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l-~~L~~L~L~~N~l 331 (419)
+ .+...+..+++|+++++++|.+... ....+... +.|++|++.+|.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2 2344556678999999999999854 33334444 6899999988764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=2.7e-20 Score=150.19 Aligned_cols=163 Identities=28% Similarity=0.508 Sum_probs=145.2
Q ss_pred cceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceee
Q 014726 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 157 (419)
..+++.|.++.+.++ .+|+.+.++.+|++|++++|+++ ++|.+++.+++|+.|+++-|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 457899999999886 67888999999999999999998 88999999999999999999998 8999999999999999
Q ss_pred ccccccC-CCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 158 FSSNNFF-GPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 158 Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
+.+|++. ..+|..|..+..|+-|++++|.+. .+|..++++++|+.|.+.+|.+- ..|..++.++.|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 9999987 457888999999999999999998 78889999999999999999887 68889999999999999999988
Q ss_pred ccchhhcccC
Q 014726 237 GPIPRSFRAL 246 (419)
Q Consensus 237 ~~~~~~~~~l 246 (419)
.+|..++++
T Consensus 187 -vlppel~~l 195 (264)
T KOG0617|consen 187 -VLPPELANL 195 (264)
T ss_pred -ecChhhhhh
Confidence 456565543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.7e-19 Score=144.42 Aligned_cols=154 Identities=31% Similarity=0.515 Sum_probs=87.1
Q ss_pred hhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCcc
Q 014726 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (419)
Q Consensus 99 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (419)
+..+.+++.|.+++|+++ .+|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 344455666666666666 55555666666666666666665 56666666666666666666654 5566666666666
Q ss_pred ceecccccccc-cCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCC
Q 014726 179 QLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL 257 (419)
Q Consensus 179 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 257 (419)
.||+.+|.+.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 66666665542 34555555555555555555554 44445555555555555555444 34444444444444444333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=153.80 Aligned_cols=157 Identities=29% Similarity=0.494 Sum_probs=125.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCCC--CCCCCCCCCCCCC-CCCCCCCCCCCCeeecCCCC--cceeEEEEeecCcccccCCh
Q 014726 23 QTSTDSAEVDALNKLIDYWNLR--SKINLTTIDPCTR-NASWASENANPRVACDCTSN--SCHITHLKIYALDIMGELPS 97 (419)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~--~~w~~~~~d~c~~-~~~w~~~~~~~~~~c~~~~~--~~~v~~L~l~~~~l~~~~p~ 97 (419)
...+.++|++||..++..++.. .+|+ .|||.. ...| .|+.|..... ...++.|+|+++.+.|.+|.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~---g~~C~p~~~~w------~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~ 436 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLRFGWN---GDPCVPQQHPW------SGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN 436 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcccCCCC---CCCCCCccccc------ccceeeccCCCCceEEEEEECCCCCccccCCH
Confidence 4456778999999999988765 3685 477852 2247 7999953222 23688999999999999999
Q ss_pred hhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCC-CC
Q 014726 98 ELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKL-TS 176 (419)
Q Consensus 98 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~ 176 (419)
.+..+++|+.|+|++|.++|.+|..++.+++|++|+|++|.+++.+|..++++++|++|+|++|.+++.+|..+... .+
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence 99999999999999999998899889999999999999999998889888899999999999999888888877653 35
Q ss_pred ccceeccccccc
Q 014726 177 LQQLYIDSSGVT 188 (419)
Q Consensus 177 L~~L~L~~n~l~ 188 (419)
+..+++.+|...
T Consensus 517 ~~~l~~~~N~~l 528 (623)
T PLN03150 517 RASFNFTDNAGL 528 (623)
T ss_pred CceEEecCCccc
Confidence 566667666544
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=1.9e-12 Score=125.78 Aligned_cols=200 Identities=30% Similarity=0.426 Sum_probs=153.3
Q ss_pred EEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCC-ccceeeccccccCCCCChhccCCCCccceecccc
Q 014726 107 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLT-KLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (419)
Q Consensus 107 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 185 (419)
.+++..+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5777777764 22334556678899999999888 6666666664 8999999999887 45566788899999999999
Q ss_pred cccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCch
Q 014726 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 265 (419)
Q Consensus 186 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 265 (419)
++. .+|......++|+.|++++|++. .+|........|+++.+++|... ..+..+.++.++..+.+.+|.+... ..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 988 56665557889999999999988 55665556667899999988543 4666788888888888877766542 45
Q ss_pred hhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccc
Q 014726 266 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL 315 (419)
Q Consensus 266 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 315 (419)
.+..++++++|++++|.++ .++. ++.+.+++.|++++|.+....+...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 5677888999999999998 4444 7888999999999999886655543
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=2e-12 Score=125.62 Aligned_cols=201 Identities=32% Similarity=0.500 Sum_probs=153.7
Q ss_pred cEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCC-CccceecccccccccCChhhcCCCCCcEEEccC
Q 014726 130 QYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLT-SLQQLYIDSSGVTGSIPQEFANLKSLRILWASD 208 (419)
Q Consensus 130 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 208 (419)
..+++..+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 36777877774 23334555678999999999887 4555566664 8999999999988 5666788899999999999
Q ss_pred CcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCC
Q 014726 209 NLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP 288 (419)
Q Consensus 209 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 288 (419)
|++. .++...+..+.|+.|++++|++. .+|..+....+|++|.+++|.... ....+..+..+..+.+.+|++. .++
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-ecc
Confidence 9988 45555557888999999999988 567666667779999998885322 3445667788888888888887 446
Q ss_pred ccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC
Q 014726 289 DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 339 (419)
Q Consensus 289 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 339 (419)
..++.+++++.|++++|+++ .++. ++.+.+++.|++++|.+....|...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 77788888999999999998 4443 7788899999999998886655433
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.32 E-value=2e-13 Score=122.52 Aligned_cols=134 Identities=21% Similarity=0.269 Sum_probs=73.5
Q ss_pred CCCCcEEEccCCcCCCCC----chhhcCccccceeeccCCcCcc----cchhhcccCCCCCeEEcCCCCCCCC----Cch
Q 014726 198 LKSLRILWASDNLFTGKI----PEFFGTLTELADLRLQGTLLEG----PIPRSFRALNKLEDLRIGDLSAEDS----TLD 265 (419)
Q Consensus 198 l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~----~~~ 265 (419)
-++|+++...+|++.... ...|...+.|+.+.+..|.+.. .+...+.++++|+.|||.+|.++.. ...
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 356777777777665322 2344555666777776666542 1234456666666666666655443 223
Q ss_pred hhcCCCCCCEEeccCCcCcccCCccc-----cCCCCCCEEEeecCccccc----CCccccCCCCCcEEEccCCcC
Q 014726 266 FLESQKSLSILSLRNCRVSGKIPDQL-----GTFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNL 331 (419)
Q Consensus 266 ~~~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l 331 (419)
.+..++.|+.|++++|.+......++ ...|+|+.|.+.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 44556666666666666654322222 2346666666666666532 112233345666666666666
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=1.1e-13 Score=131.39 Aligned_cols=175 Identities=27% Similarity=0.428 Sum_probs=145.0
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecc
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 159 (419)
..+..+++.|.+. .+|..+..|..|+.+.++.|.+. .+|..+.++..|++|+|+.|+++ .+|..+..++ |+.|.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3455667777664 67888888888888899998887 78888999999999999999998 7888888776 8899999
Q ss_pred ccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccc
Q 014726 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (419)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 239 (419)
+|+++ .+|..++....|.+|+.+.|.+. .+|..+.++.+|+.|.+..|++. .+|..+..+ .|..||++.|+++ .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ec
Confidence 99887 67888888889999999999988 67888888999999999999888 556666655 4888999999888 68
Q ss_pred hhhcccCCCCCeEEcCCCCCCCCC
Q 014726 240 PRSFRALNKLEDLRIGDLSAEDST 263 (419)
Q Consensus 240 ~~~~~~l~~L~~L~L~~n~~~~~~ 263 (419)
|-.|.+++.|++|-|.+|.+...+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCCh
Confidence 889999999999999988877653
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.5e-13 Score=122.50 Aligned_cols=210 Identities=23% Similarity=0.217 Sum_probs=150.2
Q ss_pred cCCCCCcEeecccCcCCCCCC--CCcccCCccceeeccccccCCCCC--hhccCCCCccceecccccccccCCh-hhcCC
Q 014726 124 GQLSNMQYLSLGINNFTGRVP--TELGNLTKLISLSFSSNNFFGPLP--KELGKLTSLQQLYIDSSGVTGSIPQ-EFANL 198 (419)
Q Consensus 124 ~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l 198 (419)
+++.+|+.+.|.++.+. ..+ .....+++++.|||+.|-+....+ .....+++|+.|+++.|++...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56788999999988876 333 356678999999999987764433 2345789999999999988732221 12356
Q ss_pred CCCcEEEccCCcCCCC-CchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCC-CchhhcCCCCCCEE
Q 014726 199 KSLRILWASDNLFTGK-IPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS-TLDFLESQKSLSIL 276 (419)
Q Consensus 199 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L 276 (419)
+.|+.|.++.|.++-. +......+|+|+.|++..|............++.|++|+|++|.+... .....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7899999999988732 334456789999999999853333344455678889999998887665 45567788999999
Q ss_pred eccCCcCccc-CCcc-----ccCCCCCCEEEeecCccccc-CCccccCCCCCcEEEccCCcCccc
Q 014726 277 SLRNCRVSGK-IPDQ-----LGTFAKLQLLDLSFNKLTGQ-IPTSLQDLSTLQYLYLGNNNLSGE 334 (419)
Q Consensus 277 ~Ls~n~l~~~-~p~~-----~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~ 334 (419)
+++.+.+... .|+. ...+++|++|++..|++.+. ....+..+++|+.|.+..|+++.+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 9999888753 3332 25678999999999998632 122345567888888888888754
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=3.5e-13 Score=127.98 Aligned_cols=195 Identities=25% Similarity=0.403 Sum_probs=133.0
Q ss_pred CCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEE
Q 014726 126 LSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILW 205 (419)
Q Consensus 126 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 205 (419)
+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|.+++++.|++. .+|..+-.+ -|+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 344455677777776 66777777777777777777765 56666777777777777777776 556555544 367777
Q ss_pred ccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcc
Q 014726 206 ASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSG 285 (419)
Q Consensus 206 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 285 (419)
+++|+++ .+|..++....|..|+.+.|.+. .+|..++++.+|+.|.+..|++...+... . .-.|..||++.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El-~-~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEEL-C-SLPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHH-h-CCceeeeecccCcee-
Confidence 7777776 55666666677777777777766 46666777777777777776665543332 2 334677888888888
Q ss_pred cCCccccCCCCCCEEEeecCcccccCCcccc---CCCCCcEEEccCCc
Q 014726 286 KIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ---DLSTLQYLYLGNNN 330 (419)
Q Consensus 286 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~N~ 330 (419)
.+|..|..|+.|++|-|.+|.++ ..|..+. ...-.++|+.+-++
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 78888888889999999988887 5555442 23345667776664
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.6e-12 Score=119.92 Aligned_cols=207 Identities=21% Similarity=0.176 Sum_probs=154.5
Q ss_pred ccCCccceeeccccccCCCCC--hhccCCCCccceeccccccccc--CChhhcCCCCCcEEEccCCcCCCCCch-hhcCc
Q 014726 148 GNLTKLISLSFSSNNFFGPLP--KELGKLTSLQQLYIDSSGVTGS--IPQEFANLKSLRILWASDNLFTGKIPE-FFGTL 222 (419)
Q Consensus 148 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l 222 (419)
.++.+|+...|.+..+. ..+ .....+++++.|+|+.|-+... +.+....+|+|+.|+++.|.+...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 35788999999988775 223 3567899999999999988743 234567899999999999998743222 22367
Q ss_pred cccceeeccCCcCcc-cchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCC--ccccCCCCCCE
Q 014726 223 TELADLRLQGTLLEG-PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP--DQLGTFAKLQL 299 (419)
Q Consensus 223 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~ 299 (419)
++|+.|.++.|.++. .+-.....+++|+.|++..|............+..|++|+|++|++.. .+ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 899999999999883 233445678999999999986444444455667889999999999873 33 45678999999
Q ss_pred EEeecCccccc-CCcc-----ccCCCCCcEEEccCCcCcc--cCCCCCCCCCccEEEcccCCCcc
Q 014726 300 LDLSFNKLTGQ-IPTS-----LQDLSTLQYLYLGNNNLSG--ELPVNIIAPNLIALDVSYNPLSG 356 (419)
Q Consensus 300 L~L~~n~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~L~~L~Ls~N~l~~ 356 (419)
|+++.+.+... .|+. ...+++|++|++..|++.. .+.....+++|+.|....|+++.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 99999998753 2332 2457899999999999962 22222247889999988999874
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=2.5e-12 Score=115.53 Aligned_cols=229 Identities=19% Similarity=0.228 Sum_probs=167.1
Q ss_pred eeEEEEeecCcccc----cCChhhhCCCCCCEEECcCC---cCCccCCcc-------ccCCCCCcEeecccCcCCCCCCC
Q 014726 80 HITHLKIYALDIMG----ELPSELFMLRKLMDLNLGQN---VLNGSIPAE-------IGQLSNMQYLSLGINNFTGRVPT 145 (419)
Q Consensus 80 ~v~~L~l~~~~l~~----~~p~~l~~l~~L~~L~L~~n---~l~~~~p~~-------l~~l~~L~~L~L~~n~l~~~~p~ 145 (419)
.++.++++++.+.. .+...+.+.+.|+..++++- ++..++|.. +..+++|++|+||+|.+.-..+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 68899999998743 34556777888888888764 223345543 35677999999999988744443
Q ss_pred C----cccCCccceeeccccccCCCCCh-------------hccCCCCccceeccccccccc----CChhhcCCCCCcEE
Q 014726 146 E----LGNLTKLISLSFSSNNFFGPLPK-------------ELGKLTSLQQLYIDSSGVTGS----IPQEFANLKSLRIL 204 (419)
Q Consensus 146 ~----~~~l~~L~~L~Ls~n~l~~~~p~-------------~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L 204 (419)
. +.++..|++|.|.+|.+...--. -.+.-++|+.+...+|++... +...|...+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 3 34678899999999987522111 123457899999999988632 33457778999999
Q ss_pred EccCCcCCCC----CchhhcCccccceeeccCCcCccc----chhhcccCCCCCeEEcCCCCCCCCCchhh-----cCCC
Q 014726 205 WASDNLFTGK----IPEFFGTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTLDFL-----ESQK 271 (419)
Q Consensus 205 ~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-----~~~~ 271 (419)
.++.|.|... ....+..+++|+.|+|.+|-++.. +...+..+++|+.|++++|.+.......+ ...|
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 9999988632 235678899999999999988732 45567778899999999998876643322 3479
Q ss_pred CCCEEeccCCcCccc----CCccccCCCCCCEEEeecCccc
Q 014726 272 SLSILSLRNCRVSGK----IPDQLGTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 272 ~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 308 (419)
.|++|.+.+|.++.. +-..+...+.|+.|+|++|++.
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 999999999988742 2333456799999999999993
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=4.1e-11 Score=122.18 Aligned_cols=110 Identities=29% Similarity=0.472 Sum_probs=98.4
Q ss_pred CCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEcc
Q 014726 128 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 207 (419)
Q Consensus 128 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 207 (419)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCchhhcCc-cccceeeccCCcCcc
Q 014726 208 DNLFTGKIPEFFGTL-TELADLRLQGTLLEG 237 (419)
Q Consensus 208 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~ 237 (419)
+|++++.+|..+... .++..+++.+|....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999887653 467788888886543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=7e-11 Score=99.50 Aligned_cols=105 Identities=29% Similarity=0.441 Sum_probs=25.5
Q ss_pred CCCCEEECcCCcCCccCCcccc-CCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhc-cCCCCccce
Q 014726 103 RKLMDLNLGQNVLNGSIPAEIG-QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKEL-GKLTSLQQL 180 (419)
Q Consensus 103 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L 180 (419)
.++++|+|.+|.|+ .+. .++ .+.+|+.|++++|.|+ .+. .+..++.|++|++++|+++.. ...+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEE
Confidence 34555666666554 222 233 3455666666666655 222 345555566666666655532 2222 235555555
Q ss_pred ecccccccccC-ChhhcCCCCCcEEEccCCcCC
Q 014726 181 YIDSSGVTGSI-PQEFANLKSLRILWASDNLFT 212 (419)
Q Consensus 181 ~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 212 (419)
++++|++...- -..+..+++|+.|++.+|.++
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55555554211 123444555555555555544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=4e-11 Score=105.81 Aligned_cols=221 Identities=22% Similarity=0.195 Sum_probs=111.8
Q ss_pred ceeEEEEeecCc-------c-cccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccC
Q 014726 79 CHITHLKIYALD-------I-MGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 150 (419)
Q Consensus 79 ~~v~~L~l~~~~-------l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 150 (419)
+++..|.+++.. + ...+|-.+.-+.+|..+.++.+.-.. +-+-...-+.|+++.+.+..+.. .|. +-.+
T Consensus 182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe 258 (490)
T KOG1259|consen 182 TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQD-VPS-LLPE 258 (490)
T ss_pred hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccc-ccc-ccch
Confidence 367788776542 1 22345556677788888888775432 11111223567887777655441 111 1111
Q ss_pred Cccceeeccccc-cCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceee
Q 014726 151 TKLISLSFSSNN-FFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLR 229 (419)
Q Consensus 151 ~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 229 (419)
..+....-+.-. ..|..-..+..-..|+++|+++|.++ .+..+..-.|.++.|++++|.+... +.+..+++|+.||
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LD 335 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLD 335 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEee
Confidence 111111111000 01111111112234556666666655 3445555556666666666665521 2255556666666
Q ss_pred ccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcc-cCCccccCCCCCCEEEeecCccc
Q 014726 230 LQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSG-KIPDQLGTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 230 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~ 308 (419)
+++|.++ .+..+-.++-++++|.|++|.+.. ...+..+-+|..||+++|++.. .-...++++|.|+.+.|.+|.+.
T Consensus 336 LS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 336 LSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6666554 223333445556666666554432 2234445566677777776653 12234677777777777777776
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.8e-10 Score=97.07 Aligned_cols=101 Identities=26% Similarity=0.261 Sum_probs=28.4
Q ss_pred CCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCC-CchhhcCCCCCCEEe
Q 014726 199 KSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILS 277 (419)
Q Consensus 199 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~ 277 (419)
.+|+.|++++|.++.. +.+..++.|++|++++|.++...+.....+++|++|++++|.+... ....+..+++|+.|+
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 3444444444444321 1233344444444444444421111112334444444444444332 234445556666666
Q ss_pred ccCCcCcccCCc----cccCCCCCCEEEe
Q 014726 278 LRNCRVSGKIPD----QLGTFAKLQLLDL 302 (419)
Q Consensus 278 Ls~n~l~~~~p~----~~~~l~~L~~L~L 302 (419)
+.+|.+... +. .+..+|+|+.||-
T Consensus 120 L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 120 LEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred ccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 666665522 11 2334555555553
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=3.1e-11 Score=106.48 Aligned_cols=202 Identities=19% Similarity=0.168 Sum_probs=95.9
Q ss_pred cccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccc-ccccccCChhhcCCCC
Q 014726 122 EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS-SGVTGSIPQEFANLKS 200 (419)
Q Consensus 122 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 200 (419)
.+.-+++|+.+.++++.-. .+-+....-|.|+++.+.+..++. .| .+-....+....-+. .-..|..-..+...+.
T Consensus 209 ~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred chHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 3444566777777766433 222222233667777766554431 11 111111111111110 1111222222333456
Q ss_pred CcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccC
Q 014726 201 LRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRN 280 (419)
Q Consensus 201 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~ 280 (419)
|+++|+++|.|+ .+.+++.-.|.++.|+++.|.+... ..+..+++|++|||++|.+... ..+-..+.++++|.|++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhh
Confidence 666777776666 4555555666666666666666521 2255556666666665544332 12223445555556665
Q ss_pred CcCcccCCccccCCCCCCEEEeecCccccc-CCccccCCCCCcEEEccCCcCc
Q 014726 281 CRVSGKIPDQLGTFAKLQLLDLSFNKLTGQ-IPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 281 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
|.+.. -..++.+-+|..||+++|+|... -...++++|-|+.+.|.+|.+.
T Consensus 362 N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 NKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55431 12234445555555555555421 1224455555555555555555
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.05 E-value=1.6e-11 Score=119.70 Aligned_cols=246 Identities=28% Similarity=0.345 Sum_probs=165.5
Q ss_pred hCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccc
Q 014726 100 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (419)
Q Consensus 100 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (419)
..+..++.+.+..|.+. .+-..+..+.+|+.|++.+|.|. .+...+..+++|++|++++|.|+... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence 34566677778888776 34445777888888888888887 34333677888888899888887543 3556677888
Q ss_pred eecccccccccCChhhcCCCCCcEEEccCCcCCCCCc-hhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCC
Q 014726 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 258 (419)
Q Consensus 180 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 258 (419)
|++++|.+.. + ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence 8888888873 2 345567888888888888875433 2 4677888888888887762 2223333444444666665
Q ss_pred CCCCCchhhcCCC--CCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCccc--
Q 014726 259 AEDSTLDFLESQK--SLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE-- 334 (419)
Q Consensus 259 ~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-- 334 (419)
+..... +.... .|+.+++++|++. ..+..+..+..+..|++.+|++...- .+...+.+..+....|.+...
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhh
Confidence 544311 11222 3788899999887 44455677788999999998887432 244556777777777776532
Q ss_pred -CCC--CCCCCCccEEEcccCCCcccCC
Q 014726 335 -LPV--NIIAPNLIALDVSYNPLSGNLP 359 (419)
Q Consensus 335 -~p~--~~~~~~L~~L~Ls~N~l~~~~p 359 (419)
... ....+.++.+.+.+|++....+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhccccccccccccccccccCccccccc
Confidence 111 1235788888888888876554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=1.6e-10 Score=120.61 Aligned_cols=249 Identities=28% Similarity=0.335 Sum_probs=119.1
Q ss_pred eeEEEEeecCcc-cccCChh-hhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceee
Q 014726 80 HITHLKIYALDI-MGELPSE-LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (419)
Q Consensus 80 ~v~~L~l~~~~l-~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 157 (419)
.++.|-+.++.. ...++.. |..++.|++|||++|.=-+.+|..++++-+||+|+++++.+. .+|..+.++.+|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 355555555431 2233332 455666666666665444456666666666666666666665 5666666666666666
Q ss_pred ccccccCCCCChhccCCCCccceeccccccc--ccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccc----eeecc
Q 014726 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVT--GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA----DLRLQ 231 (419)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~ 231 (419)
+..+.....+|.....+.+|++|.+...... ...-..+.++..|+.+....... .+-..+..+..|. .+.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc
Confidence 6665544444544555666666666443311 11222233444444444322211 0001111122221 22222
Q ss_pred CCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcC------CCCCCEEeccCCcCcccCCccccCCCCCCEEEeecC
Q 014726 232 GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLES------QKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 305 (419)
Q Consensus 232 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 305 (419)
++.. ...+..+..+.+|+.|.+.++.+.......... ++++..+...++... ..+.+....++|+.|.+..+
T Consensus 703 ~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 703 GCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred cccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecc
Confidence 2211 134445666777777777776665432211111 222222222222221 22233334577888888877
Q ss_pred cccccCCccccCCCCCcEEEccCCcCcc
Q 014726 306 KLTGQIPTSLQDLSTLQYLYLGNNNLSG 333 (419)
Q Consensus 306 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 333 (419)
...+.+......+..++.+.+..+.+.+
T Consensus 781 ~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 781 RLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred cccccCCCHHHHhhhcccEEeccccccc
Confidence 6665555444455555554455554443
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=3.6e-10 Score=118.02 Aligned_cols=200 Identities=24% Similarity=0.311 Sum_probs=108.3
Q ss_pred CCCCEEECcCCcCCccCCccccCCCCCcEeecccCc--CCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccce
Q 014726 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN--FTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (419)
Q Consensus 103 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 180 (419)
...+.+.+-+|.+. .++... ..++|++|-+..|. +.......|..++.|+.|||++|.-.+.+|..++.+.+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45555666555554 333332 23357777666664 332333446667777777777766556677777777777777
Q ss_pred ecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcC--cccchhhcccCCCCCeEEcCCCC
Q 014726 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL--EGPIPRSFRALNKLEDLRIGDLS 258 (419)
Q Consensus 181 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~ 258 (419)
+++++.+. .+|..+.++..|.+|++..+.....++.....+++|++|.+..... +...-..+.++.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 77777766 6677777777777777776655445555555677777777655431 12223344455555555543222
Q ss_pred CCCCCchhhcCCCCCC----EEeccCCcCcccCCccccCCCCCCEEEeecCccc
Q 014726 259 AEDSTLDFLESQKSLS----ILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 259 ~~~~~~~~~~~~~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (419)
. .....+.....|. .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 1 0011111112221 1222222222 33444566677777777777665
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-10 Score=113.29 Aligned_cols=219 Identities=26% Similarity=0.263 Sum_probs=161.0
Q ss_pred cCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcE
Q 014726 124 GQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRI 203 (419)
Q Consensus 124 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 203 (419)
..+..++.+.++.|.+. .+-..+..+.+|+.|++.+|.+..... .+..+++|++|++++|.++... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhh
Confidence 45677888889999887 344557888999999999999974432 2778999999999999998543 3667788999
Q ss_pred EEccCCcCCCCCchhhcCccccceeeccCCcCcccch-hhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCc
Q 014726 204 LWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP-RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCR 282 (419)
Q Consensus 204 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~ 282 (419)
|++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.... .+.....+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhccccc
Confidence 99999999843 345558899999999999884433 2 577889999999998776542 22233444445788888
Q ss_pred CcccCCccccCCCC--CCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCc
Q 014726 283 VSGKIPDQLGTFAK--LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLS 355 (419)
Q Consensus 283 l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~ 355 (419)
++..-+ +..+.. |+.+++++|++. ..+..+..+..+..|++.+|++.. +...-..+.+..+....|++.
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN-LEGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc-cccccccchHHHhccCcchhc
Confidence 773322 222233 899999999998 444566778899999999999874 322224567777788888865
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=2.2e-09 Score=74.36 Aligned_cols=61 Identities=39% Similarity=0.588 Sum_probs=41.1
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcC
Q 014726 271 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (419)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 331 (419)
|+|++|++++|+++...+..|..+++|++|++++|++....+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777777655555666777777777777777666666667777777777777654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.9e-09 Score=74.69 Aligned_cols=59 Identities=36% Similarity=0.489 Sum_probs=32.4
Q ss_pred CCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccc
Q 014726 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN 162 (419)
Q Consensus 104 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 162 (419)
+|++|++++|.++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555553333445555555555555555554444555555555555555554
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=3.7e-09 Score=93.42 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=49.7
Q ss_pred CCCCCCEEECcCCcCCcc--CCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCC-CChhccCCCCc
Q 014726 101 MLRKLMDLNLGQNVLNGS--IPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGP-LPKELGKLTSL 177 (419)
Q Consensus 101 ~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L 177 (419)
..+.++.+||.+|.++.- +..-+.++|.|++|+++.|.+...+...-....+|+.|.|.+..+.-. ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 456677777777777642 333456677777777777776632221113445677777766655422 22334556666
Q ss_pred cceecccccc
Q 014726 178 QQLYIDSSGV 187 (419)
Q Consensus 178 ~~L~L~~n~l 187 (419)
+.|+++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 6666666633
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.54 E-value=1.5e-08 Score=88.52 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=114.0
Q ss_pred hCCCCCCEEECcCCcCCcc----CCccccCCCCCcEeecccCcCC---CCCC-------CCcccCCccceeeccccccCC
Q 014726 100 FMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGINNFT---GRVP-------TELGNLTKLISLSFSSNNFFG 165 (419)
Q Consensus 100 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~---~~~p-------~~~~~l~~L~~L~Ls~n~l~~ 165 (419)
..+..+..++||+|.|..+ +...+.+-.+|+..++++-... ..++ .++.++|.|+..+||.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3455566666666665432 2222334455555555542111 1111 123456666666666666655
Q ss_pred CCChh----ccCCCCccceeccccccccc----CChh---------hcCCCCCcEEEccCCcCCCCCc----hhhcCccc
Q 014726 166 PLPKE----LGKLTSLQQLYIDSSGVTGS----IPQE---------FANLKSLRILWASDNLFTGKIP----EFFGTLTE 224 (419)
Q Consensus 166 ~~p~~----l~~l~~L~~L~L~~n~l~~~----~~~~---------~~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~ 224 (419)
..|.. ++.-+.|.+|.+++|.+... +... ...-|.|+.+....|++..-.. ..+..-..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 44433 34456666777766665421 1111 1234678888888887753221 12233356
Q ss_pred cceeeccCCcCcccc-----hhhcccCCCCCeEEcCCCCCCCCC----chhhcCCCCCCEEeccCCcCcccCCccc----
Q 014726 225 LADLRLQGTLLEGPI-----PRSFRALNKLEDLRIGDLSAEDST----LDFLESQKSLSILSLRNCRVSGKIPDQL---- 291 (419)
Q Consensus 225 L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~---- 291 (419)
|+++.+..|.+...- -..+..+.+|+.||+.+|.++... ...+..++.|+.|.+.+|.++.....++
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 777788777665321 112345677777787777665442 2344566777778777777664433221
Q ss_pred --cCCCCCCEEEeecCccccc
Q 014726 292 --GTFAKLQLLDLSFNKLTGQ 310 (419)
Q Consensus 292 --~~l~~L~~L~L~~n~l~~~ 310 (419)
...|+|..|...+|...+.
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hhhcCCCccccccchhhhcCc
Confidence 1346777777777766543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.4e-09 Score=93.67 Aligned_cols=200 Identities=18% Similarity=0.154 Sum_probs=123.6
Q ss_pred CCccceecccccccc-cCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCC-cCccc-chhhcccCCCCCe
Q 014726 175 TSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT-LLEGP-IPRSFRALNKLED 251 (419)
Q Consensus 175 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~ 251 (419)
..|+++||+...++. .+-..++.+.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+ .++.. ..-.+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357888887776652 22234566778888888888888777777777788888888765 33321 2234567788888
Q ss_pred EEcCCCCCCCCCchh--hcCCCCCCEEeccCCcCc---ccCCccccCCCCCCEEEeecCc-ccccCCccccCCCCCcEEE
Q 014726 252 LRIGDLSAEDSTLDF--LESQKSLSILSLRNCRVS---GKIPDQLGTFAKLQLLDLSFNK-LTGQIPTSLQDLSTLQYLY 325 (419)
Q Consensus 252 L~L~~n~~~~~~~~~--~~~~~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 325 (419)
|++++|......... -.--++|+.|+|+++.-. ..+..-..++|+|.+|||++|. ++......|..++-|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 888887765442111 112367888888876422 1122223567889999998764 4444444567788888888
Q ss_pred ccCCcCcccCCCCC----CCCCccEEEcccCCCcccCCccccc--CCceeEeecCCcc
Q 014726 326 LGNNNLSGELPVNI----IAPNLIALDVSYNPLSGNLPRNFAK--GGLSMNVIGSSIN 377 (419)
Q Consensus 326 L~~N~l~~~~p~~~----~~~~L~~L~Ls~N~l~~~~p~~~~~--~~l~~~~~~n~~~ 377 (419)
++.|.. .+|..+ ..|.|.+||+.++-=.+... .+.. +++.++-.+-++.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~me-l~~e~~~~lkin~q~~~~i 399 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTME-LLKEMLSHLKINCQHFNFI 399 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHH-HHHHhCccccccceeeeee
Confidence 888875 345433 25888888887654332211 2222 4555554444443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.6e-09 Score=92.88 Aligned_cols=177 Identities=20% Similarity=0.185 Sum_probs=109.4
Q ss_pred CCcEeecccCcCCC-CCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccccc-cccc-CChhhcCCCCCcEE
Q 014726 128 NMQYLSLGINNFTG-RVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG-VTGS-IPQEFANLKSLRIL 204 (419)
Q Consensus 128 ~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L 204 (419)
.|+++||+...|+. .+-..+..+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777777766652 222234556777777777777766666666666777777776643 2211 11235667777777
Q ss_pred EccCCcCCCCCchhh--cCccccceeeccCCcC---cccchhhcccCCCCCeEEcCCCCC-CCCCchhhcCCCCCCEEec
Q 014726 205 WASDNLFTGKIPEFF--GTLTELADLRLQGTLL---EGPIPRSFRALNKLEDLRIGDLSA-EDSTLDFLESQKSLSILSL 278 (419)
Q Consensus 205 ~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~~~~L~~L~L 278 (419)
+++.|.+........ .--++|+.|++++..- ...+......+++|.+|||+++.. .......+-+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777776653321111 1124677777776531 123444456678888888887643 3334566778888899988
Q ss_pred cCCcCcccCCc---cccCCCCCCEEEeecCc
Q 014726 279 RNCRVSGKIPD---QLGTFAKLQLLDLSFNK 306 (419)
Q Consensus 279 s~n~l~~~~p~---~~~~l~~L~~L~L~~n~ 306 (419)
+.|.. .+|. .+...|+|.+||+.++-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 88753 3454 35677899999987654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=7.4e-09 Score=101.66 Aligned_cols=179 Identities=23% Similarity=0.232 Sum_probs=111.8
Q ss_pred ChhhhCCCCCCEEECcCCcCCccCCccccCC-CCCcEeecccCcCC----------CCCCCCcccCCccceeeccccccC
Q 014726 96 PSELFMLRKLMDLNLGQNVLNGSIPAEIGQL-SNMQYLSLGINNFT----------GRVPTELGNLTKLISLSFSSNNFF 164 (419)
Q Consensus 96 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~p~~~~~l~~L~~L~Ls~n~l~ 164 (419)
|-.+..|.+|++|.+.++.+.. ...+..+ .+|++|.- +|.+. |.+-.++ -..+|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 5567888889999998887752 1112111 23444421 11111 1111111 1245777777788776
Q ss_pred CCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcc
Q 014726 165 GPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFR 244 (419)
Q Consensus 165 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 244 (419)
.....+.-++.|+.|+|++|+++.. +.+..++.|+.|||++|.+.....-....+ +|+.|.+++|.++. -..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT--LRGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh--hhhHH
Confidence 4556677778888888888888732 367778888888888888773322222233 38888888887662 23567
Q ss_pred cCCCCCeEEcCCCCCCCC-CchhhcCCCCCCEEeccCCcCc
Q 014726 245 ALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILSLRNCRVS 284 (419)
Q Consensus 245 ~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~ 284 (419)
++.+|+.||++.|-+... ....+..+..|+.|.|.+|.+-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 778888888888776654 3455566677778888888763
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1e-07 Score=84.56 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=42.1
Q ss_pred CCCCcEeecccCcCCC--CCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccc-cCChhhcCCCCCc
Q 014726 126 LSNMQYLSLGINNFTG--RVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLR 202 (419)
Q Consensus 126 l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 202 (419)
...++.+||.+|.|+. .+...+.+||.|++|+++.|.+...+...-..+.+|+.|-|.+..+.- .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4456666666666551 222233456666666666666553332211244556666665555441 1223345555666
Q ss_pred EEEccCC
Q 014726 203 ILWASDN 209 (419)
Q Consensus 203 ~L~l~~n 209 (419)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6666655
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=4.4e-09 Score=103.18 Aligned_cols=103 Identities=25% Similarity=0.257 Sum_probs=45.4
Q ss_pred CCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEecc
Q 014726 200 SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLR 279 (419)
Q Consensus 200 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls 279 (419)
.|...+.++|.+. .+..++.-++.|+.|+|+.|+++.. +.+..+++|++|||+.|.+...+.-....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3444555555554 3444444555555555555555421 1444445555555555444433222222222 4444444
Q ss_pred CCcCcccCCccccCCCCCCEEEeecCccc
Q 014726 280 NCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 280 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (419)
+|.++. +. .+.++.+|+.||+++|-|.
T Consensus 241 nN~l~t-L~-gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 241 NNALTT-LR-GIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred ccHHHh-hh-hHHhhhhhhccchhHhhhh
Confidence 444431 11 1234444444444444443
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=3.3e-08 Score=77.71 Aligned_cols=111 Identities=22% Similarity=0.318 Sum_probs=75.3
Q ss_pred CCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEE
Q 014726 246 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLY 325 (419)
Q Consensus 246 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 325 (419)
...|...+|++|.+...+......++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 344455566666555555555566677888888888887 67777888888888888888887 6677777777888888
Q ss_pred ccCCcCcccCCCCCCC-CCccEEEcccCCCcccCC
Q 014726 326 LGNNNLSGELPVNIIA-PNLIALDVSYNPLSGNLP 359 (419)
Q Consensus 326 L~~N~l~~~~p~~~~~-~~L~~L~Ls~N~l~~~~p 359 (419)
..+|.+. .+|...+. ......++.++++.+.-|
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 8888776 56554433 233344556666665544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=2.6e-07 Score=80.99 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=18.1
Q ss_pred CCCCCcEeecccCcCCCCCC----CCcccCCccceeeccc
Q 014726 125 QLSNMQYLSLGINNFTGRVP----TELGNLTKLISLSFSS 160 (419)
Q Consensus 125 ~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~ 160 (419)
-+..+..++||+|.|..... ..+++-.+|+..+++.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 35566667777766653222 2233344555555543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=2.3e-07 Score=73.03 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=64.0
Q ss_pred EEEeecCcccccCC---hhhhCCCCCCEEECcCCcCCccCCcccc-CCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 83 HLKIYALDIMGELP---SELFMLRKLMDLNLGQNVLNGSIPAEIG-QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 83 ~L~l~~~~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.++|+.+.+. .++ ..+....+|+..+|++|.+. .+|..|. .++.+++|++++|.++ .+|..++.++.|+.|++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4455555442 233 33445556666777777776 5555543 3446777777777777 66766777777777777
Q ss_pred cccccCCCCChhccCCCCccceeccccccc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVT 188 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 188 (419)
+.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 777765 44555555666667766666655
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=1.7e-05 Score=66.86 Aligned_cols=102 Identities=20% Similarity=0.150 Sum_probs=43.0
Q ss_pred CcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccC-ChhhcCCCCCcEEEcc
Q 014726 129 MQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSI-PQEFANLKSLRILWAS 207 (419)
Q Consensus 129 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~ 207 (419)
...+||++|.+. --+.|..++.|.+|.+++|+|+.+.|.--..+++|+.|.+.+|.+.... -+-+..+|+|++|.+-
T Consensus 44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 344444444443 1123444444555555555544433332233344445555444443110 0123344555555555
Q ss_pred CCcCCCCC---chhhcCccccceeeccC
Q 014726 208 DNLFTGKI---PEFFGTLTELADLRLQG 232 (419)
Q Consensus 208 ~n~l~~~~---~~~l~~l~~L~~L~l~~ 232 (419)
+|.++..- ...+..+++|+.||+.+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 55443211 12234455555555544
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.3e-05 Score=50.93 Aligned_cols=36 Identities=44% Similarity=0.662 Sum_probs=14.9
Q ss_pred CCCEEEeecCcccccCCccccCCCCCcEEEccCCcCc
Q 014726 296 KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 296 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
+|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=0.00012 Score=69.57 Aligned_cols=15 Identities=13% Similarity=0.034 Sum_probs=7.2
Q ss_pred CCCCCEEECcCCcCC
Q 014726 102 LRKLMDLNLGQNVLN 116 (419)
Q Consensus 102 l~~L~~L~L~~n~l~ 116 (419)
+.+++.|++++|.++
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 344555555554444
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=6.1e-05 Score=71.63 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=48.1
Q ss_pred ccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccc-cccccCChhhcCCCCC
Q 014726 123 IGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS-GVTGSIPQEFANLKSL 201 (419)
Q Consensus 123 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 201 (419)
+..+.++++|++++|.++ .+|. + ..+|++|.++++.-...+|..+. ++|++|++++| .+. .+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 455788999999999887 5562 2 24689999987544345565443 57778888776 333 333 245
Q ss_pred cEEEccCCc
Q 014726 202 RILWASDNL 210 (419)
Q Consensus 202 ~~L~l~~n~ 210 (419)
+.|+++.+.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 666665444
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.9e-05 Score=50.13 Aligned_cols=36 Identities=31% Similarity=0.591 Sum_probs=19.1
Q ss_pred CCCEEECcCCcCCccCCccccCCCCCcEeecccCcCC
Q 014726 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT 140 (419)
Q Consensus 104 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 140 (419)
+|++|++++|.++ .+|..++++++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555556655555 34444555555566655555554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=4.7e-05 Score=64.26 Aligned_cols=86 Identities=26% Similarity=0.184 Sum_probs=42.2
Q ss_pred CccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCC-CchhhcCCCCCCEEeccCCcCcccC---CccccCCCC
Q 014726 221 TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILSLRNCRVSGKI---PDQLGTFAK 296 (419)
Q Consensus 221 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~---p~~~~~l~~ 296 (419)
.++.|.+|.+++|+++..-|..-..+++|..|.+.+|++... ....+..+|.|++|.+-+|.....- -..+..+|+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 344444444444444433333333334444444444444333 2344556667777777776665321 112455667
Q ss_pred CCEEEeecCc
Q 014726 297 LQLLDLSFNK 306 (419)
Q Consensus 297 L~~L~L~~n~ 306 (419)
|+.||+..-.
T Consensus 142 l~~LDF~kVt 151 (233)
T KOG1644|consen 142 LRTLDFQKVT 151 (233)
T ss_pred ceEeehhhhh
Confidence 7777765543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=3.9e-05 Score=78.76 Aligned_cols=81 Identities=25% Similarity=0.213 Sum_probs=32.9
Q ss_pred CCCccceecccccccc-cCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcc-cchhhcccCCCCCe
Q 014726 174 LTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG-PIPRSFRALNKLED 251 (419)
Q Consensus 174 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 251 (419)
+|+|+.|.+++-.+.. ..-....++|+|..||+++.+++.. ..++.+++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 3445555444433321 1112233444555555555444422 334444444444444433321 11223334444444
Q ss_pred EEcCC
Q 014726 252 LRIGD 256 (419)
Q Consensus 252 L~L~~ 256 (419)
||+|.
T Consensus 225 LDIS~ 229 (699)
T KOG3665|consen 225 LDISR 229 (699)
T ss_pred eeccc
Confidence 44443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=5e-05 Score=78.00 Aligned_cols=149 Identities=23% Similarity=0.272 Sum_probs=96.2
Q ss_pred CCccceecccccccc-cCChh-hcCCCCCcEEEccCCcCCC-CCchhhcCccccceeeccCCcCcccchhhcccCCCCCe
Q 014726 175 TSLQQLYIDSSGVTG-SIPQE-FANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLED 251 (419)
Q Consensus 175 ~~L~~L~L~~n~l~~-~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 251 (419)
.+|++|++++...-. .-|.. -..+|+|+.|.+.+-.+.. .+.....++++|..||+++.+++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 567888887654321 11222 3357999999998866642 3345557889999999999988743 67888899999
Q ss_pred EEcCCCCCCCC-CchhhcCCCCCCEEeccCCcCcccC------CccccCCCCCCEEEeecCcccccCCccc-cCCCCCcE
Q 014726 252 LRIGDLSAEDS-TLDFLESQKSLSILSLRNCRVSGKI------PDQLGTFAKLQLLDLSFNKLTGQIPTSL-QDLSTLQY 323 (419)
Q Consensus 252 L~L~~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~------p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~ 323 (419)
|.+.+-.+... ....+-.+.+|+.||+|........ -+.-..+|+|+.||.+++.+.+.+-+.+ ...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 98887766553 4556667888888888887654221 1111346778888887777665433322 22344444
Q ss_pred EE
Q 014726 324 LY 325 (419)
Q Consensus 324 L~ 325 (419)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.42 E-value=0.00039 Score=55.78 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=30.7
Q ss_pred hhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCcc
Q 014726 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (419)
Q Consensus 99 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (419)
|..+++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44444555555543 233223334555555555555543 3323333455554555555543 22212223344455555
Q ss_pred ceeccc
Q 014726 179 QLYIDS 184 (419)
Q Consensus 179 ~L~L~~ 184 (419)
.+++..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 555543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.42 E-value=0.00034 Score=56.14 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=52.8
Q ss_pred ccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCC
Q 014726 121 AEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKS 200 (419)
Q Consensus 121 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 200 (419)
..|.++.+|+.+.+.. .+.......|.++++|+.+.+..+ +.......|.++++++.+.+.. .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3466777788887764 455444556777777888777664 5544445566776777777754 333233345666677
Q ss_pred CcEEEccCCcCCCCCchhhcCccccceeeccC
Q 014726 201 LRILWASDNLFTGKIPEFFGTLTELADLRLQG 232 (419)
Q Consensus 201 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 232 (419)
|+.+++..+ +.......+... .|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 777777543 332333445554 666666554
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=0.00012 Score=64.42 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=29.7
Q ss_pred cccCCccceeecccc--ccCCCCChhccCCCCccceecccccccccCChh---hcCCCCCcEEEccCCcCC
Q 014726 147 LGNLTKLISLSFSSN--NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQE---FANLKSLRILWASDNLFT 212 (419)
Q Consensus 147 ~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~ 212 (419)
|..|++|++|.++.| ++++.++.-...+++|+++++++|++.. +++ +..+.+|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 344455555555555 3333333333344555555555555541 111 233444555555555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00015 Score=63.70 Aligned_cols=110 Identities=22% Similarity=0.155 Sum_probs=62.3
Q ss_pred CChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccC--cCCCCCCCCcccCCccceeeccccccCCC-CChhc
Q 014726 95 LPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGIN--NFTGRVPTELGNLTKLISLSFSSNNFFGP-LPKEL 171 (419)
Q Consensus 95 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l 171 (419)
+..-.-.+..|+.|.+.+..++. -..|-.+++|++|.++.| .+++.++.-...+++|++|++++|++.-. --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 33333444555666665555541 123445677888888888 55555554455568888888888877520 01124
Q ss_pred cCCCCccceecccccccccC---ChhhcCCCCCcEEEc
Q 014726 172 GKLTSLQQLYIDSSGVTGSI---PQEFANLKSLRILWA 206 (419)
Q Consensus 172 ~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l 206 (419)
..+.+|..|++.+|..+..- -..|.-+++|++|+-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 55667777777777655311 123445566666543
No 65
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.06 E-value=0.0011 Score=41.87 Aligned_cols=36 Identities=33% Similarity=0.605 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCC-C----CCCCCCC-CCCCCCCCCCCCCCCCCCeeec
Q 014726 28 SAEVDALNKLIDYWNL-R----SKINLTT-IDPCTRNASWASENANPRVACD 73 (419)
Q Consensus 28 ~~~~~~l~~~~~~~~~-~----~~w~~~~-~d~c~~~~~w~~~~~~~~~~c~ 73 (419)
++|++||++|+..+.. . .+|+... .+||. | .||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~----W------~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS----W------SGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC----S------TTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee----e------ccEEeC
Confidence 5799999999999874 2 7798763 79998 9 899995
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.63 E-value=0.00013 Score=68.13 Aligned_cols=286 Identities=15% Similarity=0.062 Sum_probs=162.2
Q ss_pred CCCCeeecCCCC-cceeEEEEeecCcccccCC--hhhhCCCCCCEEECcCCc-CCccCCccc-cCCCCCcEeecccC-cC
Q 014726 66 ANPRVACDCTSN-SCHITHLKIYALDIMGELP--SELFMLRKLMDLNLGQNV-LNGSIPAEI-GQLSNMQYLSLGIN-NF 139 (419)
Q Consensus 66 ~~~~~~c~~~~~-~~~v~~L~l~~~~l~~~~p--~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n-~l 139 (419)
.+.+|.+.-... .+.++.|.+.++.-.+.-+ .....+++++.|.+.++. +++..-..+ ..+++|++|++..+ .+
T Consensus 124 v~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i 203 (483)
T KOG4341|consen 124 VDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI 203 (483)
T ss_pred CCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh
Confidence 345566643311 2478889888876443322 234678999999998885 443322223 45788999999884 44
Q ss_pred CCCCCC-CcccCCccceeeccccc-cCCCC-ChhccCCCCccceecccccccccCChhh----cCCCCCcEEEccCCc-C
Q 014726 140 TGRVPT-ELGNLTKLISLSFSSNN-FFGPL-PKELGKLTSLQQLYIDSSGVTGSIPQEF----ANLKSLRILWASDNL-F 211 (419)
Q Consensus 140 ~~~~p~-~~~~l~~L~~L~Ls~n~-l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~-l 211 (419)
+...-. -...+++|++|+++.+. +++.- ...+.++..++.+.++++.=. -...+ .....+..+++..+. +
T Consensus 204 T~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 204 TDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred HHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccc
Confidence 422222 23457899999998875 33211 122445666777766654211 11111 233445555555542 3
Q ss_pred CCCC-chhhcCccccceeeccCCcCc-ccchhh-cccCCCCCeEEcCCCCCC-CCCchh-hcCCCCCCEEeccCCcCcc-
Q 014726 212 TGKI-PEFFGTLTELADLRLQGTLLE-GPIPRS-FRALNKLEDLRIGDLSAE-DSTLDF-LESQKSLSILSLRNCRVSG- 285 (419)
Q Consensus 212 ~~~~-~~~l~~l~~L~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~L~~n~~~-~~~~~~-~~~~~~L~~L~Ls~n~l~~- 285 (419)
++.- ...-..+..|+.++.+++... ...-.. -.+..+|+.|-++.++.. ...... -.+++.|+.+++.++....
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 3221 111234677888888776432 222222 345678888888877632 222222 2457888888888775432
Q ss_pred -cCCccccCCCCCCEEEeecCcccccC-----CccccCCCCCcEEEccCCcCcccCCC-C-CCCCCccEEEcccCC
Q 014726 286 -KIPDQLGTFAKLQLLDLSFNKLTGQI-----PTSLQDLSTLQYLYLGNNNLSGELPV-N-IIAPNLIALDVSYNP 353 (419)
Q Consensus 286 -~~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~~p~-~-~~~~~L~~L~Ls~N~ 353 (419)
.+-..-.+++.|+.|.++++...... ...-..+..|+.+.|++++.+..--- . ..+++|+.+++-+++
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 12222356788888888877643211 11223466788888888876532211 1 146788888888877
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00027 Score=62.65 Aligned_cols=100 Identities=24% Similarity=0.241 Sum_probs=60.6
Q ss_pred CCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCC-ChhccCCCCccce
Q 014726 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPL-PKELGKLTSLQQL 180 (419)
Q Consensus 102 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L 180 (419)
+.+.+.|+..++.+++. .-..+++.|++|.|+-|.|+... .+..+++|++|.|..|.|.... -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45666777777777632 12356777788888877776332 3566777777777777765221 1224566777777
Q ss_pred ecccccccccCCh-----hhcCCCCCcEEE
Q 014726 181 YIDSSGVTGSIPQ-----EFANLKSLRILW 205 (419)
Q Consensus 181 ~L~~n~l~~~~~~-----~~~~l~~L~~L~ 205 (419)
.|..|.-.|.-+. .+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776665544332 244556666653
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.21 E-value=2.8e-05 Score=76.40 Aligned_cols=277 Identities=23% Similarity=0.226 Sum_probs=152.5
Q ss_pred eEEEEeecCcccccC----ChhhhCCCCCCEEECcCCcCCccCC----ccccCC-CCCcEeecccCcCCCC----CCCCc
Q 014726 81 ITHLKIYALDIMGEL----PSELFMLRKLMDLNLGQNVLNGSIP----AEIGQL-SNMQYLSLGINNFTGR----VPTEL 147 (419)
Q Consensus 81 v~~L~l~~~~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l-~~L~~L~L~~n~l~~~----~p~~~ 147 (419)
+..+.+..+.+.... -..+...+.|+.|++++|.+.+.-- ..+... ..|++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556667777664432 2345667788888888888874321 222222 5577788888777632 33445
Q ss_pred ccCCccceeeccccccCC----CCChhcc----CCCCccceeccccccccc----CChhhcCCCC-CcEEEccCCcCCCC
Q 014726 148 GNLTKLISLSFSSNNFFG----PLPKELG----KLTSLQQLYIDSSGVTGS----IPQEFANLKS-LRILWASDNLFTGK 214 (419)
Q Consensus 148 ~~l~~L~~L~Ls~n~l~~----~~p~~l~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~-L~~L~l~~n~l~~~ 214 (419)
.....++.++++.|.+.. .++..+. ...++++|.++++.++.. +...+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556778888888887631 1122222 456788888888776622 1223444455 66678888777643
Q ss_pred C----chhhcCc-cccceeeccCCcCccc----chhhcccCCCCCeEEcCCCCCCCCC----chhhcCCCCCCEEeccCC
Q 014726 215 I----PEFFGTL-TELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDST----LDFLESQKSLSILSLRNC 281 (419)
Q Consensus 215 ~----~~~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~Ls~n 281 (419)
. ...+..+ ..++.++++.|.++.. +...+.....++.+.++.|.+.... ...+.....+..+.+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 1 2233444 5677888888877643 3444555667778888777665541 122223333444444433
Q ss_pred cCcccC---------------------------------CccccCC-CCCCEEEeecCccccc----CCccccCCCCCcE
Q 014726 282 RVSGKI---------------------------------PDQLGTF-AKLQLLDLSFNKLTGQ----IPTSLQDLSTLQY 323 (419)
Q Consensus 282 ~l~~~~---------------------------------p~~~~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~ 323 (419)
...... -...... +.+..+++..+.+.+. ++......+.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~ 408 (478)
T KOG4308|consen 329 GKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEI 408 (478)
T ss_pred CccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhh
Confidence 221110 0011111 2244455554444332 2333445567777
Q ss_pred EEccCCcCcccCCCCC-----CCCCccEEEcccCCCccc
Q 014726 324 LYLGNNNLSGELPVNI-----IAPNLIALDVSYNPLSGN 357 (419)
Q Consensus 324 L~L~~N~l~~~~p~~~-----~~~~L~~L~Ls~N~l~~~ 357 (419)
++++.|......+... ....++.++++.|+++-.
T Consensus 409 ~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 447 (478)
T KOG4308|consen 409 LDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPITAL 447 (478)
T ss_pred hhhhcCccchhhHHHHHHhhhhcccchhhhhccChhhhc
Confidence 7777776654443222 112677777777777643
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.00027 Score=62.66 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=46.0
Q ss_pred CCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccc-hhhcccCCCCCeE
Q 014726 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI-PRSFRALNKLEDL 252 (419)
Q Consensus 174 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 252 (419)
+.+.+.|+.-++.+... .....++.|+.|.|+-|.|+.. ..+..++.|++|+|..|.+...- -.-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556666666666522 3455677777777777777643 33556777777777777665211 1123444555555
Q ss_pred EcCCC
Q 014726 253 RIGDL 257 (419)
Q Consensus 253 ~L~~n 257 (419)
-|..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 55444
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.71 E-value=0.0012 Score=65.71 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=7.9
Q ss_pred cCCCCCCEEEeecCc
Q 014726 292 GTFAKLQLLDLSFNK 306 (419)
Q Consensus 292 ~~l~~L~~L~L~~n~ 306 (419)
..+++++.+.+.++.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 445555555555554
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.40 E-value=0.00011 Score=72.26 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=62.5
Q ss_pred CccceeeccccccCCCCC----hhccCCCCccceecccccccccCC----hhhcCC-CCCcEEEccCCcCCCC----Cch
Q 014726 151 TKLISLSFSSNNFFGPLP----KELGKLTSLQQLYIDSSGVTGSIP----QEFANL-KSLRILWASDNLFTGK----IPE 217 (419)
Q Consensus 151 ~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~l~~n~l~~~----~~~ 217 (419)
..+..|.|.+|.+..... ..+...+.|+.|++++|.+.+.-. ..+... ..+++|++..|.+++. +..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 347788888888764433 235566788888888888773211 122222 4566677777766643 334
Q ss_pred hhcCccccceeeccCCcCcc----cchhhcc----cCCCCCeEEcCCCCCC
Q 014726 218 FFGTLTELADLRLQGTLLEG----PIPRSFR----ALNKLEDLRIGDLSAE 260 (419)
Q Consensus 218 ~l~~l~~L~~L~l~~n~l~~----~~~~~~~----~l~~L~~L~L~~n~~~ 260 (419)
.+.....++.++++.|.+.. .++..+. ...++++|++.++.++
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 45556677777777776531 1122222 2445555555555444
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.29 E-value=0.00061 Score=63.79 Aligned_cols=253 Identities=18% Similarity=0.134 Sum_probs=147.5
Q ss_pred cceeEEEEeecCcc-cccCChhh-hCCCCCCEEECcCC-cCCccCCc-cccCCCCCcEeecccC-cCCCC-CCCCcccCC
Q 014726 78 SCHITHLKIYALDI-MGELPSEL-FMLRKLMDLNLGQN-VLNGSIPA-EIGQLSNMQYLSLGIN-NFTGR-VPTELGNLT 151 (419)
Q Consensus 78 ~~~v~~L~l~~~~l-~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~-~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~ 151 (419)
-+++++|.+.++.. +...-.++ ..+++|++|++..+ .++..... -...+++|++|+++++ .+++. +-..+.+..
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~ 242 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK 242 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence 34788888877742 22222233 46889999999884 56644333 2457899999999998 45431 122345666
Q ss_pred ccceeeccccccCCCCChhc----cCCCCccceeccccc-cccc-CChhhcCCCCCcEEEccCCcCCCC-Cchh-hcCcc
Q 014726 152 KLISLSFSSNNFFGPLPKEL----GKLTSLQQLYIDSSG-VTGS-IPQEFANLKSLRILWASDNLFTGK-IPEF-FGTLT 223 (419)
Q Consensus 152 ~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-l~~l~ 223 (419)
.++.+.+.++.-. ....+ +....+..+++..+. ++.. +...-..+..|+.|..+++...+. .-.. -....
T Consensus 243 ~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 243 ELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred hhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 7778777765321 11122 233344555544442 2211 111123456788888877654322 1122 24567
Q ss_pred ccceeeccCCc-Ccccchhhc-ccCCCCCeEEcCCCCCCCC--CchhhcCCCCCCEEeccCCcCcccC-----CccccCC
Q 014726 224 ELADLRLQGTL-LEGPIPRSF-RALNKLEDLRIGDLSAEDS--TLDFLESQKSLSILSLRNCRVSGKI-----PDQLGTF 294 (419)
Q Consensus 224 ~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~-----p~~~~~l 294 (419)
+|+.+.+..++ ++..-...+ .+...|+.+++..+..... ....-.+++.|+.+.++++...... ...-..+
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 88888888875 332222223 3467888888877654332 2223346788999999887543211 1112345
Q ss_pred CCCCEEEeecCccc-ccCCccccCCCCCcEEEccCCcCc
Q 014726 295 AKLQLLDLSFNKLT-GQIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 295 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
..|+.+.++++... +..-..+..+++|+.+++-.+.-.
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 78888999988654 334445667788888888776543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.15 E-value=0.0019 Score=64.36 Aligned_cols=32 Identities=31% Similarity=0.274 Sum_probs=17.9
Q ss_pred hhcCCCCCCEEeccCCcCcccC-CccccCCCCC
Q 014726 266 FLESQKSLSILSLRNCRVSGKI-PDQLGTFAKL 297 (419)
Q Consensus 266 ~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L 297 (419)
....++.++.+.+..+...... ...+.+++.|
T Consensus 357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 3456777777777777633222 2334455555
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.93 E-value=0.0093 Score=31.43 Aligned_cols=11 Identities=55% Similarity=0.788 Sum_probs=4.2
Q ss_pred cEeecccCcCC
Q 014726 130 QYLSLGINNFT 140 (419)
Q Consensus 130 ~~L~L~~n~l~ 140 (419)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.76 E-value=0.013 Score=30.84 Aligned_cols=12 Identities=67% Similarity=0.736 Sum_probs=5.0
Q ss_pred CCEEEeecCccc
Q 014726 297 LQLLDLSFNKLT 308 (419)
Q Consensus 297 L~~L~L~~n~l~ 308 (419)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.20 E-value=0.0013 Score=56.95 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=60.3
Q ss_pred hhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCc
Q 014726 98 ELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSL 177 (419)
Q Consensus 98 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 177 (419)
++..+...+.||++.|++. ..-..|+-+..|..|+++.|.+. ..|..+..+..++.+++.+|..+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4566667777777777665 34445566667777777777776 66777777777777777777665 567777777777
Q ss_pred cceeccccccc
Q 014726 178 QQLYIDSSGVT 188 (419)
Q Consensus 178 ~~L~L~~n~l~ 188 (419)
+++++..+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777766644
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.09 E-value=0.055 Score=26.44 Aligned_cols=13 Identities=54% Similarity=0.659 Sum_probs=5.0
Q ss_pred CccEEEcccCCCc
Q 014726 343 NLIALDVSYNPLS 355 (419)
Q Consensus 343 ~L~~L~Ls~N~l~ 355 (419)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555543
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.48 E-value=0.011 Score=51.43 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=70.7
Q ss_pred cccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCC
Q 014726 122 EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 201 (419)
Q Consensus 122 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 201 (419)
.+....+.+.||++.|++. .....|..+..|..|+++.|.+. ..|..++....++++++..|... ..|.++...+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3566778889999998876 45566777888889999988876 67888888888888888888777 688888888888
Q ss_pred cEEEccCCcCC
Q 014726 202 RILWASDNLFT 212 (419)
Q Consensus 202 ~~L~l~~n~l~ 212 (419)
+++++-++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888887755
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.80 E-value=0.059 Score=45.94 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=15.2
Q ss_pred CcEEEccCCcCCCCCchhhcCccccceeeccCC
Q 014726 201 LRILWASDNLFTGKIPEFFGTLTELADLRLQGT 233 (419)
Q Consensus 201 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 233 (419)
++.++-++..|...--+.+..++.++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444555555444433344444444444444444
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=0.071 Score=45.50 Aligned_cols=33 Identities=27% Similarity=0.198 Sum_probs=17.2
Q ss_pred eEEEEeecCcccccCChhhhCCCCCCEEECcCC
Q 014726 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQN 113 (419)
Q Consensus 81 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n 113 (419)
|..++-+++.+...--..+.+++.++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 455555555554444444555555555555544
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.89 E-value=0.58 Score=25.48 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=5.4
Q ss_pred CCcEeecccCcCC
Q 014726 128 NMQYLSLGINNFT 140 (419)
Q Consensus 128 ~L~~L~L~~n~l~ 140 (419)
+|++|+|++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.89 E-value=0.58 Score=25.48 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=5.4
Q ss_pred CCcEeecccCcCC
Q 014726 128 NMQYLSLGINNFT 140 (419)
Q Consensus 128 ~L~~L~L~~n~l~ 140 (419)
+|++|+|++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.71 E-value=0.6 Score=25.40 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=9.3
Q ss_pred CccceeeccccccCCC
Q 014726 151 TKLISLSFSSNNFFGP 166 (419)
Q Consensus 151 ~~L~~L~Ls~n~l~~~ 166 (419)
++|++|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666533
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.71 E-value=0.6 Score=25.40 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=9.3
Q ss_pred CccceeeccccccCCC
Q 014726 151 TKLISLSFSSNNFFGP 166 (419)
Q Consensus 151 ~~L~~L~Ls~n~l~~~ 166 (419)
++|++|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666533
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.16 E-value=0.17 Score=27.04 Aligned_cols=15 Identities=47% Similarity=0.725 Sum_probs=7.1
Q ss_pred CCccEEEcccCCCcc
Q 014726 342 PNLIALDVSYNPLSG 356 (419)
Q Consensus 342 ~~L~~L~Ls~N~l~~ 356 (419)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 355556666655554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.48 E-value=1.2 Score=24.36 Aligned_cols=18 Identities=50% Similarity=0.792 Sum_probs=12.1
Q ss_pred CCccEEEcccCCCcccCCc
Q 014726 342 PNLIALDVSYNPLSGNLPR 360 (419)
Q Consensus 342 ~~L~~L~Ls~N~l~~~~p~ 360 (419)
++|+.|++++|+|+ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777776 5554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.56 E-value=3.7 Score=22.86 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=10.9
Q ss_pred CCccEEEcccCCCc
Q 014726 342 PNLIALDVSYNPLS 355 (419)
Q Consensus 342 ~~L~~L~Ls~N~l~ 355 (419)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888875
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.33 E-value=4.2 Score=22.30 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=7.5
Q ss_pred CCCcEEEccCCcCc
Q 014726 319 STLQYLYLGNNNLS 332 (419)
Q Consensus 319 ~~L~~L~L~~N~l~ 332 (419)
.+|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 89
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.77 E-value=6.3 Score=29.52 Aligned_cols=20 Identities=40% Similarity=0.477 Sum_probs=11.4
Q ss_pred CCchhhHHHHHHHHHHHHHhh
Q 014726 1 MELLRPSLLLTVSLSLLQLVS 21 (419)
Q Consensus 1 m~~~~~~~l~~~~l~~~~~~~ 21 (419)
|+ ++.++|+.++|+++++++
T Consensus 1 Ma-SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHH
Confidence 66 666666655555544443
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.06 E-value=4.7 Score=39.98 Aligned_cols=63 Identities=30% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCCCCCEEeccCCcCccc--CCccccCCCCCCEEEeecC--cccccCCcccc--CCCCCcEEEccCCcCcc
Q 014726 269 SQKSLSILSLRNCRVSGK--IPDQLGTFAKLQLLDLSFN--KLTGQIPTSLQ--DLSTLQYLYLGNNNLSG 333 (419)
Q Consensus 269 ~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~--~l~~L~~L~L~~N~l~~ 333 (419)
+.+.+..+.|++|++... +...-...|+|..|+|++| .+.. ..++. +...|++|.+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 445666666777665421 1111123456666666666 2221 11111 12345566666666543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.72 E-value=55 Score=32.19 Aligned_cols=109 Identities=18% Similarity=0.117 Sum_probs=61.1
Q ss_pred ccceeeccCCcCcccchh--hcccCCCCCeEEcCCCCCCCC-Cc--------hhhcCCCCCCEEeccCCcCcccCCc---
Q 014726 224 ELADLRLQGTLLEGPIPR--SFRALNKLEDLRIGDLSAEDS-TL--------DFLESQKSLSILSLRNCRVSGKIPD--- 289 (419)
Q Consensus 224 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~-~~--------~~~~~~~~L~~L~Ls~n~l~~~~p~--- 289 (419)
.+++|.+.+|.+.+..-. .+...+..+.+++.+-..... .. ..-....-+..+.++.+......-.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 377888888877654433 233445666666654322111 00 0011224467788888877643222
Q ss_pred cccCCCCCCEEEeecCcccc----cCCccccCCCCCcEEEccCCcCc
Q 014726 290 QLGTFAKLQLLDLSFNKLTG----QIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 290 ~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
....-+.+..|++++|.... .+|.....-..++.+..+.|...
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 23455789999999997653 24444444456666666666553
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.88 E-value=9.6 Score=37.91 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCCCCeEEcCCCCCCCC--CchhhcCCCCCCEEeccCC--cCcccCCcccc--CCCCCCEEEeecCcccc
Q 014726 246 LNKLEDLRIGDLSAEDS--TLDFLESQKSLSILSLRNC--RVSGKIPDQLG--TFAKLQLLDLSFNKLTG 309 (419)
Q Consensus 246 l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~Ls~n--~l~~~~p~~~~--~l~~L~~L~L~~n~l~~ 309 (419)
.+.+..++|++|++... ....-...|.|+.|+|++| .+.. ..++. +...|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 34555666666655443 1222334566666666666 2221 11111 12346666666666643
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=37.58 E-value=61 Score=31.93 Aligned_cols=198 Identities=17% Similarity=0.029 Sum_probs=87.5
Q ss_pred CccceeeccccccCCCCChhccCCCCccceecccccccccCChhh---cCCCCCcEEEccCCcCCCCCchhhcC---ccc
Q 014726 151 TKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEF---ANLKSLRILWASDNLFTGKIPEFFGT---LTE 224 (419)
Q Consensus 151 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~---l~~ 224 (419)
+.+++++++.|.+....|..+..-.. -+.++.++++...-..+ ..-..+.+++++.|.....+|..+.. -..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 45667777777666555444321110 03344444332111000 01125667777777766666654322 223
Q ss_pred cceeeccCCcCc---ccchhhcccCCCCCeEEcCCCCCCCC--------CchhhcCCCCCCEEeccCCcCcccCCccc--
Q 014726 225 LADLRLQGTLLE---GPIPRSFRALNKLEDLRIGDLSAEDS--------TLDFLESQKSLSILSLRNCRVSGKIPDQL-- 291 (419)
Q Consensus 225 L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~~~~~--------~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-- 291 (419)
++.++.+.-.+. ..-+-..+.-+++...+++.|..... ..+.++.-+++ +|++..+....+-+..+
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 455555544332 11122334445666666665543321 12333444455 55555554433222111
Q ss_pred ----cCCCCCCEEEeecCcccccC-CccccCCCCCcEEEccCCcCcccCCCCCC---CCCccEEEccc
Q 014726 292 ----GTFAKLQLLDLSFNKLTGQI-PTSLQDLSTLQYLYLGNNNLSGELPVNII---APNLIALDVSY 351 (419)
Q Consensus 292 ----~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~~~L~~L~Ls~ 351 (419)
...+.=-.+|+..|...+.- ...-.+-..+++|..+.|.+.|+...... .+..+.+++.+
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred ccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccc
Confidence 00111123444444333211 11111123577888888877766543331 35566666654
No 94
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=33.79 E-value=45 Score=21.03 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=13.0
Q ss_pred CCchhhHHHHHHHHHHHHH
Q 014726 1 MELLRPSLLLTVSLSLLQL 19 (419)
Q Consensus 1 m~~~~~~~l~~~~l~~~~~ 19 (419)
|++.|+.+++.+++.++..
T Consensus 1 ~kk~rwiili~iv~~Cl~l 19 (47)
T PRK10299 1 MKKFRWVVLVVVVLACLLL 19 (47)
T ss_pred CceeeehHHHHHHHHHHHH
Confidence 8899998876555554443
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.05 E-value=31 Score=18.51 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=5.6
Q ss_pred CCCcEeecccC
Q 014726 127 SNMQYLSLGIN 137 (419)
Q Consensus 127 ~~L~~L~L~~n 137 (419)
++|++|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 96
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.30 E-value=1.4e+02 Score=18.47 Aligned_cols=8 Identities=25% Similarity=0.318 Sum_probs=3.5
Q ss_pred CCccEEEc
Q 014726 342 PNLIALDV 349 (419)
Q Consensus 342 ~~L~~L~L 349 (419)
++++.|.+
T Consensus 34 ~sl~~L~f 41 (44)
T PF05725_consen 34 NSLKSLSF 41 (44)
T ss_pred CCceEEEe
Confidence 34444444
Done!