Query 014726
Match_columns 419
No_of_seqs 469 out of 4669
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:44:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 6.6E-42 2.2E-46 320.6 22.0 297 25-356 2-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 5.8E-41 2E-45 350.8 23.4 336 22-377 5-381 (768)
3 4eco_A Uncharacterized protein 100.0 4E-41 1.4E-45 344.6 20.8 344 26-393 27-536 (636)
4 3rgz_A Protein brassinosteroid 100.0 1.2E-40 4E-45 348.6 24.2 300 79-378 318-718 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 3.7E-40 1.3E-44 344.1 25.8 339 24-377 264-766 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 5.6E-38 1.9E-42 309.3 22.4 300 79-378 30-409 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 2.7E-36 9.3E-41 299.0 25.2 301 78-378 31-334 (477)
8 4eco_A Uncharacterized protein 100.0 1.8E-36 6.2E-41 310.1 19.6 294 95-394 198-567 (636)
9 3v47_A TOLL-like receptor 5B a 100.0 1.2E-35 4.3E-40 292.5 19.6 284 76-359 51-412 (455)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-34 4.5E-39 295.4 27.2 325 79-403 32-563 (606)
11 1ogq_A PGIP-2, polygalacturona 100.0 4.9E-36 1.7E-40 280.7 14.1 249 103-378 50-305 (313)
12 2id5_A Lingo-1, leucine rich r 100.0 9.6E-35 3.3E-39 287.9 22.9 310 84-402 16-337 (477)
13 3t6q_A CD180 antigen; protein- 100.0 1.5E-34 5.3E-39 294.9 24.2 298 80-379 255-562 (606)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-34 4.5E-39 290.0 23.2 291 79-377 21-457 (520)
15 3o6n_A APL1; leucine-rich repe 100.0 4.4E-34 1.5E-38 275.9 23.7 288 79-378 45-353 (390)
16 3t6q_A CD180 antigen; protein- 100.0 5.2E-34 1.8E-38 290.9 24.2 298 79-377 33-413 (606)
17 3oja_B Anopheles plasmodium-re 100.0 8.6E-34 3E-38 288.5 25.4 288 79-378 51-359 (597)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.5E-34 2.2E-38 287.6 23.7 108 79-189 52-160 (562)
19 2z81_A CD282 antigen, TOLL-lik 100.0 7E-34 2.4E-38 286.6 23.1 153 222-377 333-510 (549)
20 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-33 7.4E-38 286.4 25.3 302 77-379 54-560 (606)
21 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-33 1.3E-37 294.6 27.2 300 78-377 23-375 (844)
22 4ecn_A Leucine-rich repeat pro 100.0 9.6E-34 3.3E-38 295.8 21.4 292 77-377 489-840 (876)
23 2z63_A TOLL-like receptor 4, v 100.0 4E-33 1.4E-37 282.2 24.8 134 243-377 369-507 (570)
24 3j0a_A TOLL-like receptor 5; m 100.0 5.3E-33 1.8E-37 293.5 24.6 111 78-188 47-161 (844)
25 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-32 4.8E-37 284.1 27.2 290 79-368 25-356 (680)
26 2z63_A TOLL-like receptor 4, v 100.0 1.6E-32 5.3E-37 277.9 24.9 161 217-378 367-532 (570)
27 2z7x_B TOLL-like receptor 1, v 100.0 1E-32 3.6E-37 276.2 23.3 292 77-378 43-482 (520)
28 1xku_A Decorin; proteoglycan, 100.0 3.9E-32 1.3E-36 256.2 25.6 285 80-374 32-329 (330)
29 1ziw_A TOLL-like receptor 3; i 100.0 6.2E-32 2.1E-36 279.3 28.9 317 81-403 250-627 (680)
30 2ft3_A Biglycan; proteoglycan, 100.0 3E-32 1E-36 257.2 22.8 283 80-373 34-328 (332)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7E-32 2.4E-36 272.7 25.7 293 76-378 73-511 (562)
32 4fcg_A Uncharacterized protein 100.0 4.1E-33 1.4E-37 262.4 15.3 277 26-332 24-314 (328)
33 4g8a_A TOLL-like receptor 4; l 100.0 9.1E-32 3.1E-36 275.4 24.0 135 79-213 52-187 (635)
34 1xku_A Decorin; proteoglycan, 100.0 2.9E-31 9.9E-36 250.2 23.8 268 79-353 52-330 (330)
35 3o6n_A APL1; leucine-rich repe 100.0 1.8E-31 6.2E-36 257.5 22.6 272 79-362 69-359 (390)
36 2ft3_A Biglycan; proteoglycan, 100.0 3.5E-31 1.2E-35 249.9 22.7 267 79-353 54-331 (332)
37 2z80_A TOLL-like receptor 2, v 100.0 4.3E-32 1.5E-36 258.4 15.4 263 94-359 45-318 (353)
38 4fmz_A Internalin; leucine ric 100.0 2E-30 6.7E-35 246.2 24.7 280 79-378 44-325 (347)
39 4fmz_A Internalin; leucine ric 100.0 5.3E-30 1.8E-34 243.2 27.4 278 78-376 65-345 (347)
40 3oja_B Anopheles plasmodium-re 100.0 9.3E-31 3.2E-35 266.2 23.1 275 79-364 75-367 (597)
41 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-31 7E-36 268.5 16.5 183 79-261 26-210 (549)
42 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-30 1E-34 264.2 25.3 143 94-238 45-188 (635)
43 1o6v_A Internalin A; bacterial 100.0 6.4E-30 2.2E-34 252.5 24.2 281 79-378 68-389 (466)
44 1o6v_A Internalin A; bacterial 100.0 2.8E-29 9.6E-34 247.8 26.6 281 78-377 45-366 (466)
45 4fcg_A Uncharacterized protein 100.0 5.4E-30 1.9E-34 241.1 20.0 235 101-355 79-314 (328)
46 2z66_A Variable lymphocyte rec 100.0 3.1E-30 1.1E-34 240.5 18.0 248 83-358 11-264 (306)
47 3zyj_A Leucine-rich repeat-con 100.0 6.3E-30 2.1E-34 250.7 20.8 235 94-332 57-292 (440)
48 2z66_A Variable lymphocyte rec 100.0 5.8E-31 2E-35 245.5 12.0 230 79-333 28-262 (306)
49 3zyi_A Leucine-rich repeat-con 100.0 1.1E-29 3.9E-34 249.7 21.6 228 103-332 75-303 (452)
50 1ozn_A Reticulon 4 receptor; N 100.0 4.5E-30 1.5E-34 237.0 16.1 256 82-364 14-270 (285)
51 3bz5_A Internalin-J, INLJ; leu 100.0 6.6E-29 2.3E-33 243.9 24.2 272 79-378 42-353 (457)
52 3zyi_A Leucine-rich repeat-con 100.0 5.8E-29 2E-33 244.6 22.8 243 109-356 60-304 (452)
53 1ozn_A Reticulon 4 receptor; N 100.0 4.2E-30 1.4E-34 237.2 13.8 207 78-284 31-238 (285)
54 3zyj_A Leucine-rich repeat-con 100.0 8.5E-29 2.9E-33 242.6 23.2 244 107-355 47-292 (440)
55 1wwl_A Monocyte differentiatio 100.0 5.3E-31 1.8E-35 246.5 5.3 245 103-356 43-310 (312)
56 1wwl_A Monocyte differentiatio 100.0 1.1E-30 3.8E-35 244.3 7.3 245 79-333 43-310 (312)
57 2z80_A TOLL-like receptor 2, v 100.0 7.3E-30 2.5E-34 242.9 13.1 257 79-336 52-318 (353)
58 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-28 1.2E-32 238.8 24.1 256 79-356 64-353 (457)
59 3o53_A Protein LRIM1, AGAP0063 100.0 2.5E-30 8.5E-35 242.4 3.5 266 80-359 11-280 (317)
60 1jl5_A Outer protein YOPM; leu 100.0 6.6E-27 2.3E-31 229.5 25.0 259 103-393 131-422 (454)
61 1jl5_A Outer protein YOPM; leu 99.9 2.1E-27 7.2E-32 233.0 16.3 248 80-356 12-291 (454)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2E-28 6.7E-33 229.5 6.7 258 104-375 11-273 (317)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-25 4.1E-30 227.5 26.7 268 80-395 41-310 (622)
64 3oja_A Leucine-rich immune mol 99.9 4.6E-28 1.6E-32 240.0 8.8 224 95-332 22-250 (487)
65 2o6q_A Variable lymphocyte rec 99.9 2.6E-26 8.9E-31 210.0 19.7 217 52-308 2-218 (270)
66 2z62_A TOLL-like receptor 4, v 99.9 4.2E-26 1.5E-30 209.3 18.5 209 103-332 28-237 (276)
67 2z62_A TOLL-like receptor 4, v 99.9 3E-26 1E-30 210.4 16.4 206 79-309 28-238 (276)
68 1z7x_W Ribonuclease inhibitor; 99.9 4.3E-29 1.5E-33 246.1 -3.5 298 80-377 57-411 (461)
69 3oja_A Leucine-rich immune mol 99.9 8.7E-27 3E-31 230.8 10.3 230 125-368 32-265 (487)
70 1z7x_W Ribonuclease inhibitor; 99.9 9.8E-29 3.3E-33 243.5 -4.3 278 80-357 86-413 (461)
71 2o6q_A Variable lymphocyte rec 99.9 1.3E-24 4.3E-29 198.8 22.4 204 104-334 17-220 (270)
72 3rfs_A Internalin B, repeat mo 99.9 3.6E-25 1.2E-29 202.7 16.2 184 147-339 59-242 (272)
73 3rfs_A Internalin B, repeat mo 99.9 3E-25 1E-29 203.2 15.6 225 128-364 20-244 (272)
74 3g06_A SSPH2 (leucine-rich rep 99.9 3E-24 1E-28 217.3 24.2 245 79-364 61-306 (622)
75 1p9a_G Platelet glycoprotein I 99.9 2.9E-24 1E-28 198.3 19.4 201 100-331 7-207 (290)
76 1p9a_G Platelet glycoprotein I 99.9 2.1E-24 7.1E-29 199.3 18.1 201 77-308 8-208 (290)
77 4glp_A Monocyte differentiatio 99.9 2.6E-24 8.8E-29 200.8 17.2 204 127-356 91-308 (310)
78 3goz_A Leucine-rich repeat-con 99.9 8E-26 2.7E-30 215.7 5.8 251 84-334 3-299 (362)
79 2ast_B S-phase kinase-associat 99.9 7.9E-26 2.7E-30 213.4 5.3 252 81-364 49-315 (336)
80 3goz_A Leucine-rich repeat-con 99.9 6.2E-26 2.1E-30 216.5 3.7 254 107-360 2-302 (362)
81 2xwt_C Thyrotropin receptor; s 99.9 2.5E-24 8.4E-29 193.2 13.0 196 104-329 32-236 (239)
82 2ca6_A RAN GTPase-activating p 99.9 5.3E-26 1.8E-30 218.9 1.5 241 94-358 23-319 (386)
83 2ast_B S-phase kinase-associat 99.9 1.1E-25 3.8E-30 212.4 3.4 234 79-316 70-314 (336)
84 2ca6_A RAN GTPase-activating p 99.9 2.4E-26 8.3E-31 221.3 -1.6 243 119-378 24-317 (386)
85 4glp_A Monocyte differentiatio 99.9 6.6E-24 2.3E-28 198.1 14.9 203 151-378 91-308 (310)
86 2xwt_C Thyrotropin receptor; s 99.9 9.1E-24 3.1E-28 189.5 14.0 196 128-353 32-237 (239)
87 1h6u_A Internalin H; cell adhe 99.9 1.1E-22 3.9E-27 189.4 18.7 193 100-308 38-230 (308)
88 1h6u_A Internalin H; cell adhe 99.9 8.5E-23 2.9E-27 190.2 16.3 206 109-332 25-230 (308)
89 3m19_A Variable lymphocyte rec 99.9 3.3E-22 1.1E-26 180.7 18.8 171 81-254 16-186 (251)
90 3m19_A Variable lymphocyte rec 99.9 3.8E-22 1.3E-26 180.3 19.0 179 105-334 16-194 (251)
91 4ay9_X Follicle-stimulating ho 99.9 1.4E-21 4.8E-26 185.4 16.6 239 83-329 13-256 (350)
92 4ay9_X Follicle-stimulating ho 99.9 2.2E-21 7.5E-26 184.1 17.1 221 80-305 31-256 (350)
93 2o6s_A Variable lymphocyte rec 99.9 1.5E-21 5E-26 171.2 14.7 162 103-295 28-189 (208)
94 3ogk_B Coronatine-insensitive 99.9 1.7E-23 5.8E-28 212.6 1.5 212 167-378 285-527 (592)
95 2o6s_A Variable lymphocyte rec 99.9 2.6E-21 8.8E-26 169.7 14.9 103 107-212 11-113 (208)
96 3ogk_B Coronatine-insensitive 99.8 2.5E-23 8.5E-28 211.3 -2.5 164 193-356 287-477 (592)
97 3cvr_A Invasion plasmid antige 99.8 2.9E-20 1E-24 185.9 16.6 215 47-317 36-252 (571)
98 3cvr_A Invasion plasmid antige 99.8 5.7E-20 1.9E-24 183.8 17.1 38 298-336 210-247 (571)
99 1m9s_A Internalin B; cell inva 99.8 1E-19 3.5E-24 183.9 14.3 170 125-308 41-210 (605)
100 1h6t_A Internalin B; cell adhe 99.8 1E-19 3.6E-24 167.9 13.0 170 126-309 45-214 (291)
101 1h6t_A Internalin B; cell adhe 99.8 2.7E-19 9.3E-24 165.1 15.7 171 148-332 43-213 (291)
102 2v9t_B SLIT homolog 2 protein 99.8 1.4E-19 4.8E-24 160.0 13.1 152 82-236 14-165 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-19 7.9E-24 158.6 13.7 154 82-238 14-168 (220)
104 3e6j_A Variable lymphocyte rec 99.8 4.1E-19 1.4E-23 158.0 15.3 142 94-238 33-174 (229)
105 1m9s_A Internalin B; cell inva 99.8 2.8E-19 9.6E-24 180.6 15.2 172 100-285 40-211 (605)
106 2v9t_B SLIT homolog 2 protein 99.8 3.9E-19 1.3E-23 157.1 14.3 151 106-259 14-164 (220)
107 2xot_A Amphoterin-induced prot 99.8 2.4E-19 8.2E-24 170.7 13.1 177 82-261 21-203 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 5.8E-19 2E-23 156.0 13.8 152 106-260 14-166 (220)
109 2xot_A Amphoterin-induced prot 99.8 3.1E-19 1.1E-23 169.9 12.2 176 106-284 21-202 (361)
110 2p1m_B Transport inhibitor res 99.8 1.9E-20 6.5E-25 190.1 3.3 293 79-373 130-539 (594)
111 3e6j_A Variable lymphocyte rec 99.8 2.4E-18 8.3E-23 153.0 16.2 149 108-260 24-172 (229)
112 2p1m_B Transport inhibitor res 99.8 6.9E-21 2.4E-25 193.4 -0.6 296 79-377 105-519 (594)
113 4ezg_A Putative uncharacterize 99.8 1.7E-18 5.7E-23 150.3 12.9 152 125-308 42-194 (197)
114 4ezg_A Putative uncharacterize 99.8 9.3E-19 3.2E-23 151.9 11.1 151 100-258 41-192 (197)
115 1dce_A Protein (RAB geranylger 99.8 2.8E-21 9.7E-26 194.0 -6.1 120 225-349 443-567 (567)
116 1dce_A Protein (RAB geranylger 99.8 4.1E-21 1.4E-25 192.8 -5.7 190 125-326 347-567 (567)
117 4b8c_D Glucose-repressible alc 99.8 2E-19 6.8E-24 186.0 5.1 218 79-308 173-404 (727)
118 1xeu_A Internalin C; cellular 99.7 3.1E-18 1.1E-22 155.6 9.8 169 125-308 17-185 (263)
119 1xeu_A Internalin C; cellular 99.7 5.5E-18 1.9E-22 153.9 10.1 169 102-285 18-186 (263)
120 4b8c_D Glucose-repressible alc 99.7 2E-18 7E-23 178.5 5.3 219 103-333 173-405 (727)
121 3sb4_A Hypothetical leucine ri 99.7 2.4E-17 8.2E-22 154.8 10.2 261 79-349 25-328 (329)
122 1w8a_A SLIT protein; signaling 99.7 6.7E-17 2.3E-21 139.5 12.2 132 82-216 11-143 (192)
123 2ell_A Acidic leucine-rich nuc 99.7 6.6E-17 2.2E-21 136.4 11.0 132 103-236 24-160 (168)
124 1w8a_A SLIT protein; signaling 99.7 1.5E-16 5.1E-21 137.3 13.3 114 248-361 30-145 (192)
125 3sb4_A Hypothetical leucine ri 99.7 2.4E-17 8.2E-22 154.8 7.7 259 101-370 23-326 (329)
126 2ell_A Acidic leucine-rich nuc 99.7 1.6E-16 5.4E-21 134.1 11.4 132 126-259 23-159 (168)
127 2je0_A Acidic leucine-rich nuc 99.7 5.6E-17 1.9E-21 134.0 8.1 126 103-230 17-147 (149)
128 2je0_A Acidic leucine-rich nuc 99.7 1.3E-16 4.3E-21 131.9 8.9 128 126-255 16-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.7 7.6E-16 2.6E-20 133.0 12.8 128 82-213 13-140 (193)
130 2o6r_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 129.0 13.9 132 82-216 10-141 (177)
131 2o6r_A Variable lymphocyte rec 99.6 1.7E-15 6E-20 128.8 12.5 133 105-240 9-141 (177)
132 2wfh_A SLIT homolog 2 protein 99.6 1.4E-15 4.7E-20 131.3 11.5 128 106-237 13-140 (193)
133 4fdw_A Leucine rich hypothetic 99.6 7.7E-14 2.7E-18 134.0 20.2 250 102-364 112-367 (401)
134 4fdw_A Leucine rich hypothetic 99.6 7.2E-14 2.5E-18 134.2 18.6 247 97-355 130-383 (401)
135 1ds9_A Outer arm dynein; leuci 99.6 3.4E-17 1.2E-21 142.2 -4.4 137 99-240 14-157 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.6 3.5E-15 1.2E-19 126.8 7.6 132 99-236 15-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.8E-21 138.9 -3.8 109 123-236 14-128 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1E-14 3.5E-19 123.9 8.4 130 122-257 14-150 (176)
139 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.6E-18 115.7 11.8 87 127-213 30-116 (170)
140 2r9u_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 114.3 11.4 104 82-188 15-118 (174)
141 3g39_A Variable lymphocyte rec 99.5 4.4E-13 1.5E-17 113.1 11.5 107 129-238 11-117 (170)
142 2r9u_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 112.0 11.1 106 106-214 15-120 (174)
143 3un9_A NLR family member X1; l 99.3 4.2E-14 1.4E-18 134.6 -4.3 135 102-236 71-224 (372)
144 3un9_A NLR family member X1; l 99.3 1.7E-13 5.9E-18 130.3 -1.4 134 199-332 101-252 (372)
145 2ifg_A High affinity nerve gro 99.3 9.3E-12 3.2E-16 117.4 8.8 103 84-189 13-117 (347)
146 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.1E-16 114.3 9.6 105 107-214 12-118 (347)
147 4fs7_A Uncharacterized protein 99.2 1.6E-09 5.4E-14 104.0 19.3 138 223-369 230-370 (394)
148 4fs7_A Uncharacterized protein 99.1 2.2E-09 7.7E-14 102.9 18.8 265 96-375 64-353 (394)
149 2ra8_A Uncharacterized protein 99.1 8.5E-11 2.9E-15 110.9 5.1 179 78-259 106-319 (362)
150 4gt6_A Cell surface protein; l 99.0 5.6E-09 1.9E-13 100.1 17.2 110 240-354 258-369 (394)
151 2ra8_A Uncharacterized protein 99.0 4.2E-10 1.5E-14 106.1 5.2 59 193-254 166-226 (362)
152 4gt6_A Cell surface protein; l 98.9 1.4E-07 4.9E-12 90.3 21.3 266 98-374 58-367 (394)
153 4h09_A Hypothetical leucine ri 98.6 2.9E-06 9.8E-11 80.6 20.5 122 80-209 47-168 (379)
154 1io0_A Tropomodulin; LRR prote 98.5 1.8E-08 6.3E-13 85.7 2.0 18 195-212 32-50 (185)
155 1io0_A Tropomodulin; LRR prote 98.5 5.2E-08 1.8E-12 82.9 2.9 67 170-236 31-106 (185)
156 4h09_A Hypothetical leucine ri 98.4 2E-05 6.9E-10 74.7 18.1 263 79-355 69-345 (379)
157 3rw6_A Nuclear RNA export fact 98.3 8E-08 2.7E-12 86.1 0.7 63 173-237 168-234 (267)
158 3rw6_A Nuclear RNA export fact 98.3 3.6E-07 1.2E-11 81.9 4.1 105 100-206 138-258 (267)
159 3e4g_A ATP synthase subunit S, 98.0 1.2E-06 4.3E-11 72.8 1.5 81 249-329 63-149 (176)
160 3e4g_A ATP synthase subunit S, 98.0 3.2E-06 1.1E-10 70.3 3.0 33 177-209 63-95 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00014 4.8E-09 61.6 3.7 15 222-236 69-83 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00046 1.6E-08 58.4 5.6 82 175-256 41-135 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0019 6.7E-08 50.8 5.9 55 275-331 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0068 2.3E-07 47.6 6.2 35 105-139 33-67 (130)
165 2lz0_A Uncharacterized protein 57.3 32 0.0011 24.9 6.4 40 120-160 13-52 (100)
166 2lz0_A Uncharacterized protein 47.3 28 0.00096 25.2 4.7 45 139-184 8-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.6e-42 Score=320.59 Aligned_cols=297 Identities=29% Similarity=0.451 Sum_probs=241.0
Q ss_pred CCCHHHHHHHHHHHHhcCCC---CCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCcceeEEEEeecCcccc--cCChhh
Q 014726 25 STDSAEVDALNKLIDYWNLR---SKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMG--ELPSEL 99 (419)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~---~~w~~~~~d~c~~~~~w~~~~~~~~~~c~~~~~~~~v~~L~l~~~~l~~--~~p~~l 99 (419)
.|.++|++||.+|++.+..+ .+|+.. .|||.. .| .||.|+.....++|+.|+++++.+.+ .+|..+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~-~~~C~~--~w------~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l 72 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT-TDCCNR--TW------LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTT-SCTTTT--CS------TTEEECCSSSCCCEEEEEEECCCCSSCEECCGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCC-CCCCcC--CC------cceEeCCCCCCceEEEEECCCCCccCCcccChhH
Confidence 58889999999999999654 579764 688852 38 79999754334689999999999999 899999
Q ss_pred hCCCCCCEEECcC-CcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCcc
Q 014726 100 FMLRKLMDLNLGQ-NVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 178 (419)
Q Consensus 100 ~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 178 (419)
..+++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|.++++|++|++++|.+++.+|..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 9999999999995 999989999999999999999999999988999999999999999999999988999999999999
Q ss_pred ceecccccccccCChhhcCCC-CCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCC
Q 014726 179 QLYIDSSGVTGSIPQEFANLK-SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL 257 (419)
Q Consensus 179 ~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 257 (419)
+|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.+++..|..+..+++|+.|
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L----- 226 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI----- 226 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE-----
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE-----
Confidence 999999999888898888887 899999999988888888888776 8888888888877766666655555554
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 014726 258 SAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 337 (419)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 337 (419)
++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.
T Consensus 227 -------------------~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 227 -------------------HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp -------------------ECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred -------------------ECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 5555555544443 55667777777777777777777777777777777777777777776
Q ss_pred CCCCCCccEEEcccCC-Ccc
Q 014726 338 NIIAPNLIALDVSYNP-LSG 356 (419)
Q Consensus 338 ~~~~~~L~~L~Ls~N~-l~~ 356 (419)
...+++|+.+++++|+ +.|
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp STTGGGSCGGGTCSSSEEES
T ss_pred CccccccChHHhcCCCCccC
Confidence 5456677777777777 554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-41 Score=350.83 Aligned_cols=336 Identities=26% Similarity=0.379 Sum_probs=240.3
Q ss_pred hccCCCHHHHHHHHHHHHhcCCC---CCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCcceeEEEEeecCccccc---C
Q 014726 22 AQTSTDSAEVDALNKLIDYWNLR---SKINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGE---L 95 (419)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~---~~w~~~~~d~c~~~~~w~~~~~~~~~~c~~~~~~~~v~~L~l~~~~l~~~---~ 95 (419)
+++...++|++||++||+.+.++ .+|+.. .|||. | .||+|+ .++|+.|++++..+.|. +
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~-~~~C~----w------~gv~C~----~~~v~~L~L~~~~l~g~~~~l 69 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKNLLPDWSSN-KNPCT----F------DGVTCR----DDKVTSIDLSSKPLNVGFSAV 69 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTTSSTTCCTT-SCGGG----S------TTEEEE----TTEEEEEECTTSCCCEEHHHH
T ss_pred ccccCCHHHHHHHHHHHhhCCCcccccCCCCC-CCCcC----C------cceEEC----CCcEEEEECCCCCcCCccCcc
Confidence 34445778999999999988643 679754 78998 9 799997 35999999999988887 6
Q ss_pred Chh-----------------------hhCCCCCCEEECcCCcCCccCCc--cccCCCCCcEeecccCcCCCCCCCCc-cc
Q 014726 96 PSE-----------------------LFMLRKLMDLNLGQNVLNGSIPA--EIGQLSNMQYLSLGINNFTGRVPTEL-GN 149 (419)
Q Consensus 96 p~~-----------------------l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~ 149 (419)
|++ +..+++|++|+|++|.+++.+|. .++++++|++|++++|.+.+..|..+ .+
T Consensus 70 ~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 149 (768)
T 3rgz_A 70 SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149 (768)
T ss_dssp HHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCC
T ss_pred ChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhcc
Confidence 654 44556666666666666655555 56666666666666666655555443 55
Q ss_pred CCccceeeccccccCCCCChh---ccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccc
Q 014726 150 LTKLISLSFSSNNFFGPLPKE---LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA 226 (419)
Q Consensus 150 l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 226 (419)
+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+++.+|. ++.+++|+
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCC
Confidence 666666666666666555544 55666666666666666654442 5677777777777777766665 77777888
Q ss_pred eeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCC-CCCCEEEeecC
Q 014726 227 DLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTF-AKLQLLDLSFN 305 (419)
Q Consensus 227 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n 305 (419)
+|++++|.+++.+|..+.++++|++|++++|.+....+.. .+++|++|++++|.+++.+|..+... ++|++|++++|
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 8888888777777777888888888888877765443322 67778888888888887777777664 88888888888
Q ss_pred cccccCCccccCCCCCcEEEccCCcCcccCCCC-C-CCCCccEEEcccCCCcccCCccccc-C-Cce-eEeecCCcc
Q 014726 306 KLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPLSGNLPRNFAK-G-GLS-MNVIGSSIN 377 (419)
Q Consensus 306 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~-~l~-~~~~~n~~~ 377 (419)
++++.+|..+..+++|++|++++|++.|.+|.. + .+++|++|++++|.++|.+|..+.. . .++ +++.+|++.
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 888888888888888888888888888777754 2 4678888888888888888877776 4 665 556666554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-41 Score=344.65 Aligned_cols=344 Identities=19% Similarity=0.289 Sum_probs=246.3
Q ss_pred CCHHHHHHHHHHHHhcCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCcceeEEEEeecCcccc
Q 014726 26 TDSAEVDALNKLIDYWNLRS------------KINLTTIDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMG 93 (419)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~~------------~w~~~~~d~c~~~~~w~~~~~~~~~~c~~~~~~~~v~~L~l~~~~l~~ 93 (419)
....|++||.++++.++.+. .|+.. .|+|. |. ...||.|+.. ++|+.|+++++++.|
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~----w~---~~~GV~C~~~---~~V~~L~L~~~~l~g 95 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDM----WG---AQPGVSLNSN---GRVTGLSLEGFGASG 95 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGG----TT---CCTTEEECTT---CCEEEEECTTSCCEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCccc----cc---CCCCeEEcCC---CCEEEEEecCcccCC
Confidence 34468999999999876541 35433 45554 41 1268999743 699999999999999
Q ss_pred cCChhhhCCCCCCEEECcCCc-----------------------------------------------------------
Q 014726 94 ELPSELFMLRKLMDLNLGQNV----------------------------------------------------------- 114 (419)
Q Consensus 94 ~~p~~l~~l~~L~~L~L~~n~----------------------------------------------------------- 114 (419)
.+|++++++++|++|+|++|.
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 999999999999999999884
Q ss_pred -------------------CCccCCccccCCCCCcEeecccCcCCCC-----------------CCCCcc--cCCcccee
Q 014726 115 -------------------LNGSIPAEIGQLSNMQYLSLGINNFTGR-----------------VPTELG--NLTKLISL 156 (419)
Q Consensus 115 -------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L 156 (419)
+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|
T Consensus 176 ~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 334 788899999999999999999975 899999 99999999
Q ss_pred eccccccCCCCChhccCCCCccceeccccc-ccc-cCChhhcCC------CCCcEEEccCCcCCCCCch--hhcCccccc
Q 014726 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSG-VTG-SIPQEFANL------KSLRILWASDNLFTGKIPE--FFGTLTELA 226 (419)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~ 226 (419)
++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .++.+++|+
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 999999999999999999999999999998 887 788777665 78888888888887 6666 777888888
Q ss_pred eeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCC--------------------------CCCEEeccC
Q 014726 227 DLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQK--------------------------SLSILSLRN 280 (419)
Q Consensus 227 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~--------------------------~L~~L~Ls~ 280 (419)
+|++++|.++|.+| .+..+++|+.|++++|.+. ..+..+..++ +|++|++++
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCS
T ss_pred EEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcC
Confidence 88888887776666 5555555555555555444 2222234444 455555555
Q ss_pred CcCcccCCcccc-------CCCCCCEEEeecCcccccCCc-cccCCCCCcEEEccCCcCcccCCCCCC--CC-------C
Q 014726 281 CRVSGKIPDQLG-------TFAKLQLLDLSFNKLTGQIPT-SLQDLSTLQYLYLGNNNLSGELPVNII--AP-------N 343 (419)
Q Consensus 281 n~l~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~--~~-------~ 343 (419)
|.+++..|..+. .+++|++|++++|+++ .+|. .+..+++|++|++++|+++ .+|.... .. +
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGG
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCC
Confidence 555554454444 4455666666666665 3333 2334666777777777776 5554432 11 7
Q ss_pred ccEEEcccCCCcccCCcccc--c-CCce-eEeecCCcccCCCcccccchhhhcc
Q 014726 344 LIALDVSYNPLSGNLPRNFA--K-GGLS-MNVIGSSINANNLQDGKALGMMQCL 393 (419)
Q Consensus 344 L~~L~Ls~N~l~~~~p~~~~--~-~~l~-~~~~~n~~~~~~~~~~~p~~~~~~~ 393 (419)
|++|+|++|.++ .+|..+. . +.++ +++.+|.+.+ +|..+..+.
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~------ip~~~~~l~ 536 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK------FPTQPLNSS 536 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS------CCCGGGGCS
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC------cChhhhcCC
Confidence 777888887777 6776665 4 5565 5555555542 566665544
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-40 Score=348.55 Aligned_cols=300 Identities=31% Similarity=0.483 Sum_probs=237.6
Q ss_pred ceeEEEEeecCcccccCChh-hhCCCCCCEEECcCCcCCccCCccccC---------------------------CCCCc
Q 014726 79 CHITHLKIYALDIMGELPSE-LFMLRKLMDLNLGQNVLNGSIPAEIGQ---------------------------LSNMQ 130 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~---------------------------l~~L~ 130 (419)
.+++.|+++++.+.|.+|.. +..+++|++|++++|.+++.+|..+.+ +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 35666666666666666654 566666666666666665555544433 44566
Q ss_pred EeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCc
Q 014726 131 YLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL 210 (419)
Q Consensus 131 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 210 (419)
+|++++|.+++.+|..+.++++|++|++++|++++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|+
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 66666666666677777778888888888888887888888888888888888888888888888888888888888888
Q ss_pred CCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCcc
Q 014726 211 FTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQ 290 (419)
Q Consensus 211 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 290 (419)
+++.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++.+|..
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 88888888888888888888888888888888888888888888888887777777888888888888888887766654
Q ss_pred c----------------------------------------------------------------------cCCCCCCEE
Q 014726 291 L----------------------------------------------------------------------GTFAKLQLL 300 (419)
Q Consensus 291 ~----------------------------------------------------------------------~~l~~L~~L 300 (419)
+ +.+++|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 3 235678899
Q ss_pred EeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcc
Q 014726 301 DLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 301 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~ 377 (419)
|+++|+++|.+|..++.++.|+.|+|++|+++|.+|..+ .+++|+.|||++|+++|.+|..+.. ..++ +++++|++.
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 999999999999999999999999999999999999877 4899999999999999999999888 7775 788888877
Q ss_pred c
Q 014726 378 A 378 (419)
Q Consensus 378 ~ 378 (419)
+
T Consensus 718 g 718 (768)
T 3rgz_A 718 G 718 (768)
T ss_dssp E
T ss_pred c
Confidence 5
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-40 Score=344.11 Aligned_cols=339 Identities=21% Similarity=0.305 Sum_probs=250.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCC----CCC--CCCCCCCCCC------CCCCCeeecCCCCcceeEEEEeecCcc
Q 014726 24 TSTDSAEVDALNKLIDYWNLRSKINLTT----IDP--CTRNASWASE------NANPRVACDCTSNSCHITHLKIYALDI 91 (419)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~w~~~~----~d~--c~~~~~w~~~------~~~~~~~c~~~~~~~~v~~L~l~~~~l 91 (419)
++...+|++||.+|+++++.+ +|+... .+| |. |... ....||.|++ .++|+.|+|+++++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C~----W~~~~~~~~w~~~~GV~C~~---~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLN----WNFNKELDMWGDQPGVDLDN---NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCCS----CCCSSCGGGTTCCTTEEECT---TSCEEEEECTTTCC
T ss_pred cccchHHHHHHHHHHHHcCCC-CCCcCCCcccccCCccc----cccccccccccCcCceEecC---CCCEEEEECccCCC
Confidence 345567999999999999776 787653 467 86 7221 1127999985 36999999999999
Q ss_pred cccCChhhhCCCCCCEEEC-cCCcCCcc----------------------------------------------------
Q 014726 92 MGELPSELFMLRKLMDLNL-GQNVLNGS---------------------------------------------------- 118 (419)
Q Consensus 92 ~~~~p~~l~~l~~L~~L~L-~~n~l~~~---------------------------------------------------- 118 (419)
.|.+|++++++++|++|+| ++|.+.|.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 77754433
Q ss_pred ------------------------CCccccCCCCCcEeecccCcCCC-----------------CCCCCcc--cCCccce
Q 014726 119 ------------------------IPAEIGQLSNMQYLSLGINNFTG-----------------RVPTELG--NLTKLIS 155 (419)
Q Consensus 119 ------------------------~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~ 155 (419)
+|..|+++++|++|+|++|.+++ .+|..++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 78889999999999999999997 3899887 9999999
Q ss_pred eeccccccCCCCChhccCCCCccceeccccc-ccc-cCChhhcCCC-------CCcEEEccCCcCCCCCch--hhcCccc
Q 014726 156 LSFSSNNFFGPLPKELGKLTSLQQLYIDSSG-VTG-SIPQEFANLK-------SLRILWASDNLFTGKIPE--FFGTLTE 224 (419)
Q Consensus 156 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~--~l~~l~~ 224 (419)
|++++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+..++ +|+.|++++|+++ .+|. .+..+++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999999999999999999999999998 887 7787665554 8999999998888 7777 7888888
Q ss_pred cceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCC-CCEEeccCCcCcccCCccccCCCC--CCEEE
Q 014726 225 LADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS-LSILSLRNCRVSGKIPDQLGTFAK--LQLLD 301 (419)
Q Consensus 225 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~ 301 (419)
|++|++++|.++ .+| .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.++ .+|..+..++. |+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 888888888887 667 7788888888888888777 44445666666 777777777766 55554443322 44444
Q ss_pred eecCcccc----------------------------cCCccc-cCCCCCcEEEccCCcCcccCCCCCC-C--------CC
Q 014726 302 LSFNKLTG----------------------------QIPTSL-QDLSTLQYLYLGNNNLSGELPVNII-A--------PN 343 (419)
Q Consensus 302 L~~n~l~~----------------------------~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~-~--------~~ 343 (419)
+++|++.+ .+|..+ ..+++|+.|+|++|++. .+|.... . ++
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence 44444433 233322 24566666666666666 5554332 1 16
Q ss_pred ccEEEcccCCCcccCCcccc--c-CCce-eEeecCCcc
Q 014726 344 LIALDVSYNPLSGNLPRNFA--K-GGLS-MNVIGSSIN 377 (419)
Q Consensus 344 L~~L~Ls~N~l~~~~p~~~~--~-~~l~-~~~~~n~~~ 377 (419)
|+.|+|++|.++ .+|..+. . +.|+ +++.+|.+.
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS 766 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC
Confidence 666666666666 5665554 3 4554 444455443
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.6e-38 Score=309.26 Aligned_cols=300 Identities=19% Similarity=0.193 Sum_probs=254.5
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccC-CccccCCCCCcEeecccCcCCCCCCCCcccCCccceee
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSI-PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 157 (419)
.++++|+++++.+.+..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57999999999999888999999999999999999997655 56799999999999999999988899999999999999
Q ss_pred ccccccCCCCChh--ccCCCCccceecccccccccCChh-hcCCCCCcEEEccCCcCCCCCchhhcCc------------
Q 014726 158 FSSNNFFGPLPKE--LGKLTSLQQLYIDSSGVTGSIPQE-FANLKSLRILWASDNLFTGKIPEFFGTL------------ 222 (419)
Q Consensus 158 Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l------------ 222 (419)
+++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 889999999999999999887766 8899999999999999998777655443
Q ss_pred ----------------------cccceeeccCCcCcccchhhcccC----------------------------------
Q 014726 223 ----------------------TELADLRLQGTLLEGPIPRSFRAL---------------------------------- 246 (419)
Q Consensus 223 ----------------------~~L~~L~l~~n~l~~~~~~~~~~l---------------------------------- 246 (419)
++|++|++++|.+++..|..+...
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 678888898888876665544322
Q ss_pred -----CCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCC
Q 014726 247 -----NKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321 (419)
Q Consensus 247 -----~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 321 (419)
++|+.|++++|.+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 578888888888777777778888999999999999998888888899999999999999987778888889999
Q ss_pred cEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCccc
Q 014726 322 QYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (419)
Q Consensus 322 ~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~~ 378 (419)
++|++++|++++..|..+ .+++|++|++++|++++..+..+.. +.++ +++.+|++.+
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 999999999987777665 4789999999999998755555555 6665 7777777775
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=299.02 Aligned_cols=301 Identities=22% Similarity=0.210 Sum_probs=264.4
Q ss_pred cceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceee
Q 014726 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 157 (419)
..+++.|+++++.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 34789999999999988888999999999999999999988899999999999999999999966667789999999999
Q ss_pred ccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcc
Q 014726 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (419)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (419)
+++|++.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99999998888899999999999999999998888899999999999999999998888889999999999999999998
Q ss_pred cchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccC
Q 014726 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (419)
Q Consensus 238 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 317 (419)
..+..+..+++|+.|++++|......+.......+|++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 88889999999999999998766554444445568999999999998544467888999999999999999887888889
Q ss_pred CCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCccc
Q 014726 318 LSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (419)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~~ 378 (419)
+++|++|++++|++.+..|..+ .+++|++|+|++|.+++..+..|.. +.++ +.+.+|++..
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9999999999999998777665 4789999999999999655555555 6665 7777787764
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-36 Score=310.11 Aligned_cols=294 Identities=22% Similarity=0.314 Sum_probs=229.4
Q ss_pred CChhhhCCCCCCEEECcCCcCCcc-----------------CCcccc--CCCCCcEeecccCcCCCCCCCCcccCCccce
Q 014726 95 LPSELFMLRKLMDLNLGQNVLNGS-----------------IPAEIG--QLSNMQYLSLGINNFTGRVPTELGNLTKLIS 155 (419)
Q Consensus 95 ~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 155 (419)
+|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..|+++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 788899999999999999999875 888888 9999999999999998899999999999999
Q ss_pred eeccccc-cCC-CCChhccCC------CCccceecccccccccCCh--hhcCCCCCcEEEccCCcCCCCCchhhcCcccc
Q 014726 156 LSFSSNN-FFG-PLPKELGKL------TSLQQLYIDSSGVTGSIPQ--EFANLKSLRILWASDNLFTGKIPEFFGTLTEL 225 (419)
Q Consensus 156 L~Ls~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 225 (419)
|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+++|++|++++|+++|.+| .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 877 778777765 88888888888888 7777 78888888888888888887777 66666777
Q ss_pred ceeeccCCcCcccchhhcccCCC-CCeEEcCCCCCC-------------------------CCCchhhc-------CCCC
Q 014726 226 ADLRLQGTLLEGPIPRSFRALNK-LEDLRIGDLSAE-------------------------DSTLDFLE-------SQKS 272 (419)
Q Consensus 226 ~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~-------------------------~~~~~~~~-------~~~~ 272 (419)
++|++++|.++ .+|..+..+++ |++|++++|.+. ...+..+. .+++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 77777776666 55555666665 666666655544 32223344 5679
Q ss_pred CCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccC-C-------CCCcEEEccCCcCcccCCCCC---CC
Q 014726 273 LSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD-L-------STLQYLYLGNNNLSGELPVNI---IA 341 (419)
Q Consensus 273 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l-------~~L~~L~L~~N~l~~~~p~~~---~~ 341 (419)
|++|++++|.+++..+..+..+++|++|++++|+++ .+|..... . ++|++|++++|+++ .+|..+ .+
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l 512 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL 512 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence 999999999999443444567899999999999999 66654332 2 29999999999999 777665 57
Q ss_pred CCccEEEcccCCCcccCCccccc-CCcee-EeecCCc-ccCCCcccccchhhhccc
Q 014726 342 PNLIALDVSYNPLSGNLPRNFAK-GGLSM-NVIGSSI-NANNLQDGKALGMMQCLH 394 (419)
Q Consensus 342 ~~L~~L~Ls~N~l~~~~p~~~~~-~~l~~-~~~~n~~-~~~~~~~~~p~~~~~~~~ 394 (419)
++|++|+|++|++++ +|..+.. +.++. ++.+|.. ..+.+.+.+|..+..+..
T Consensus 513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 999999999999998 8988888 88874 4443332 234445678888776543
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-35 Score=292.46 Aligned_cols=284 Identities=20% Similarity=0.182 Sum_probs=245.9
Q ss_pred CCcceeEEEEeecCcccccCC-hhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCC--CcccCCc
Q 014726 76 SNSCHITHLKIYALDIMGELP-SELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPT--ELGNLTK 152 (419)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~ 152 (419)
+...+++.|+++++.+.+.++ ..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+. .|..+++
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 130 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence 345689999999998876664 5688999999999999999887888999999999999999999874444 4889999
Q ss_pred cceeeccccccCCCCChh-ccCCCCccceecccccccccCChhhcCC---------------------------------
Q 014726 153 LISLSFSSNNFFGPLPKE-LGKLTSLQQLYIDSSGVTGSIPQEFANL--------------------------------- 198 (419)
Q Consensus 153 L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l--------------------------------- 198 (419)
|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 210 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence 999999999998887766 7889999999999999987766655433
Q ss_pred -CCCcEEEccCCcCCCCCchhhcC---------------------------------------ccccceeeccCCcCccc
Q 014726 199 -KSLRILWASDNLFTGKIPEFFGT---------------------------------------LTELADLRLQGTLLEGP 238 (419)
Q Consensus 199 -~~L~~L~l~~n~l~~~~~~~l~~---------------------------------------l~~L~~L~l~~n~l~~~ 238 (419)
++|++|++++|.+++..+..+.. .++|++|++++|.+++.
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 67899999999887655544322 25899999999999988
Q ss_pred chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCC
Q 014726 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (419)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 318 (419)
.|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 99999999999999999999988888889999999999999999998888899999999999999999998889999999
Q ss_pred CCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCC
Q 014726 319 STLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLP 359 (419)
Q Consensus 319 ~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p 359 (419)
++|++|++++|++++..+..+ .+++|++|++++|++++..|
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999996444333 47999999999999999988
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-34 Score=295.36 Aligned_cols=325 Identities=16% Similarity=0.117 Sum_probs=207.9
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 45666777666666655556666666666666666666555666666666666666666666555666666666666666
Q ss_pred cccccCCCCChhccCCCCccceecccccccc-cCChhhcCCCCCcEEEccCCcCCCCCchh-------------------
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEF------------------- 218 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------- 218 (419)
++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|++++..+..
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 6666655554556666666666666666553 34555666666666665555444321110
Q ss_pred --------------------------------------------------------------------------------
Q 014726 219 -------------------------------------------------------------------------------- 218 (419)
Q Consensus 219 -------------------------------------------------------------------------------- 218 (419)
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence
Q ss_pred --------------------------------------------------------------------------hcCccc
Q 014726 219 --------------------------------------------------------------------------FGTLTE 224 (419)
Q Consensus 219 --------------------------------------------------------------------------l~~l~~ 224 (419)
+..+++
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 351 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTT
T ss_pred ccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCC
Confidence 112233
Q ss_pred cceeeccCCcCccc--chhh-----------------------cccCCCCCeEEcCCCCCCCCCc-hhhcCCCCCCEEec
Q 014726 225 LADLRLQGTLLEGP--IPRS-----------------------FRALNKLEDLRIGDLSAEDSTL-DFLESQKSLSILSL 278 (419)
Q Consensus 225 L~~L~l~~n~l~~~--~~~~-----------------------~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~L 278 (419)
|++|++++|.+++. .+.. +..+++|+.|++++|.+....+ ..+..+++|++|++
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 44444444444322 1333 3444455555555554444433 46677888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEEeecCcccc-cCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcc
Q 014726 279 RNCRVSGKIPDQLGTFAKLQLLDLSFNKLTG-QIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSG 356 (419)
Q Consensus 279 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~ 356 (419)
++|.+++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..|..+ .+++|++|++++|++++
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 8888887788888888899999999998887 478888888999999999999987777655 47899999999999998
Q ss_pred cCCccccc-CCce-eEeecCCcccCCC-cccccc--hhhhccccCCcCCCCC
Q 014726 357 NLPRNFAK-GGLS-MNVIGSSINANNL-QDGKAL--GMMQCLHSNTKCSNKV 403 (419)
Q Consensus 357 ~~p~~~~~-~~l~-~~~~~n~~~~~~~-~~~~p~--~~~~~~~~~~~c~~~~ 403 (419)
..|..|.. +.++ +++.+|++..-.. .+..|. .......++..|+|..
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 88888877 7776 6677776652000 011221 1223567777787754
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.9e-36 Score=280.69 Aligned_cols=249 Identities=24% Similarity=0.409 Sum_probs=209.3
Q ss_pred CCCCEEECcCCcCCc--cCCccccCCCCCcEeeccc-CcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccc
Q 014726 103 RKLMDLNLGQNVLNG--SIPAEIGQLSNMQYLSLGI-NNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (419)
Q Consensus 103 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (419)
.+++.|++++|.+++ .+|..|.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478889999999988 7888888899999999984 8888888888888888888888888888788888888888888
Q ss_pred eecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCcc-ccceeeccCCcCcccchhhcccCCCCCeEEcCCCC
Q 014726 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT-ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 258 (419)
Q Consensus 180 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 258 (419)
|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~------------- 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------------- 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------------
Confidence 88888888888888888888888888888888877777777777 7888888888777666655543
Q ss_pred CCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCC
Q 014726 259 AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN 338 (419)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 338 (419)
+. |++|++++|.+++..|..+..+++|+.|++++|++++..|. +..+++|++|++++|++++.+|..
T Consensus 197 -----------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 197 -----------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp -----------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred -----------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 33 77788888888888899999999999999999999976665 788999999999999999999977
Q ss_pred C-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCccc
Q 014726 339 I-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (419)
Q Consensus 339 ~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~~ 378 (419)
+ .+++|++|+|++|+++|.+|.. .. +.++ +.+.+|+...
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 6 4899999999999999999976 45 6665 6677777554
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.6e-35 Score=287.92 Aligned_cols=310 Identities=19% Similarity=0.167 Sum_probs=265.5
Q ss_pred EEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecccccc
Q 014726 84 LKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNF 163 (419)
Q Consensus 84 L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 163 (419)
++.++.++. .+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|++
T Consensus 16 v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 344444443 4555443 5899999999999987888999999999999999999988899999999999999999999
Q ss_pred CCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhc
Q 014726 164 FGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSF 243 (419)
Q Consensus 164 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 243 (419)
++..+..|.++++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 97777778999999999999999998888999999999999999999998888899999999999999999998888889
Q ss_pred ccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcE
Q 014726 244 RALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQY 323 (419)
Q Consensus 244 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 323 (419)
.++++|+.|++++|.+.......+..+++|++|++++|.+.+.+|.......+|++|++++|++++..+..+..+++|++
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCe
Confidence 99999999999999998877778899999999999999888888877777779999999999999544467889999999
Q ss_pred EEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcccCCCcccccch---------hhh
Q 014726 324 LYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINANNLQDGKALG---------MMQ 391 (419)
Q Consensus 324 L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~~~~~~~~~p~~---------~~~ 391 (419)
|++++|++++..+..+ .+++|++|+|++|.+++..|..|.. +.|+ +++.+|.+.. +|.. ...
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT------LEESVFHSVGNLETLI 326 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC------CCGGGBSCGGGCCEEE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce------eCHhHcCCCcccCEEE
Confidence 9999999996666544 4799999999999999998988888 7777 6666676653 2221 122
Q ss_pred ccccCCcCCCC
Q 014726 392 CLHSNTKCSNK 402 (419)
Q Consensus 392 ~~~~~~~c~~~ 402 (419)
...++..|+|.
T Consensus 327 l~~N~l~c~c~ 337 (477)
T 2id5_A 327 LDSNPLACDCR 337 (477)
T ss_dssp CCSSCEECSGG
T ss_pred ccCCCccCccc
Confidence 55677777764
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-34 Score=294.86 Aligned_cols=298 Identities=20% Similarity=0.230 Sum_probs=264.2
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecc
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 159 (419)
+++.|+++++.+.+..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7899999999998877778999999999999999998 788889999999999999999997778899999999999999
Q ss_pred ccccCCCCCh-hccCCCCccceecccccccccC--ChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 160 SNNFFGPLPK-ELGKLTSLQQLYIDSSGVTGSI--PQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 160 ~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
+|.+.+.+|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 9998866654 4889999999999999998665 778999999999999999999888889999999999999999998
Q ss_pred ccchh-hcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCccc---CCccccCCCCCCEEEeecCcccccCC
Q 014726 237 GPIPR-SFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGK---IPDQLGTFAKLQLLDLSFNKLTGQIP 312 (419)
Q Consensus 237 ~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~L~~n~l~~~~p 312 (419)
+..+. .+..+++|+.|++++|.+....+..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 76654 488999999999999999888888889999999999999999862 33568889999999999999998889
Q ss_pred ccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcccC
Q 014726 313 TSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINAN 379 (419)
Q Consensus 313 ~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~~~ 379 (419)
..+..+++|++|++++|++++..|..+ .+++| +|++++|++++..|..+.. +.++ +++.+|++.++
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999999999999999999998887666 47889 9999999999888877777 6665 78888888763
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=290.00 Aligned_cols=291 Identities=20% Similarity=0.225 Sum_probs=187.5
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..|..+..+++|++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 46888888888887777777888888888888888888766778888888888888888887 45555 6788888888
Q ss_pred cccccCC-CCChhccCCCCccceecccccccccCChhhcCCCCC--cEEEccCCcC--CCCCchhhcCc-----------
Q 014726 159 SSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL--RILWASDNLF--TGKIPEFFGTL----------- 222 (419)
Q Consensus 159 s~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~l----------- 222 (419)
++|.+++ .+|..|+.+++|++|++++|.+.+ ..+..+++| +.|++++|.+ .+..|..+..+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 8888876 467778888888888888777654 233444444 5555555554 33333222221
Q ss_pred ------------------------------------------------------------------------cccceeec
Q 014726 223 ------------------------------------------------------------------------TELADLRL 230 (419)
Q Consensus 223 ------------------------------------------------------------------------~~L~~L~l 230 (419)
++|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 13444444
Q ss_pred cCCcCcccchhhc-----------------------------------------------------ccCCCCCeEEcCCC
Q 014726 231 QGTLLEGPIPRSF-----------------------------------------------------RALNKLEDLRIGDL 257 (419)
Q Consensus 231 ~~n~l~~~~~~~~-----------------------------------------------------~~l~~L~~L~L~~n 257 (419)
++|.+++.+|..+ ..+++|++|++++|
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECC
Confidence 4444443333332 45566666666666
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCcCcc--cCCccccCCCCCCEEEeecCcccccCCcc-ccCCCCCcEEEccCCcCccc
Q 014726 258 SAEDSTLDFLESQKSLSILSLRNCRVSG--KIPDQLGTFAKLQLLDLSFNKLTGQIPTS-LQDLSTLQYLYLGNNNLSGE 334 (419)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~ 334 (419)
.+....+..+..+++|++|++++|++++ .+|..+..+++|++|++++|++.+.+|.. +..+++|++|++++|++++.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 6665555556666667777777776664 34455666667777777777766534443 55666677777777766665
Q ss_pred CCCCCCCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcc
Q 014726 335 LPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 335 ~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~ 377 (419)
+|..+. ++|+.|++++|.++ .+|..+.. +.++ +++.+|.+.
T Consensus 415 ~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 415 IFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp GGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 554332 57777777777777 66666656 5655 555555554
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-34 Score=275.86 Aligned_cols=288 Identities=17% Similarity=0.130 Sum_probs=225.3
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.+++.++.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 57899999999886554555789999999999999999777778999999999999999999888888999999999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcc-
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG- 237 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~- 237 (419)
++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.. +..+++|+.|++++|.+++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccccc
Confidence 999998665556789999999999999999888888999999999999999998653 3344555555555554432
Q ss_pred -----------------cchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEE
Q 014726 238 -----------------PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLL 300 (419)
Q Consensus 238 -----------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 300 (419)
.++. ...++|+.|++++|.+... ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred CCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 1121 1235777777777777653 567778888888888888887778888888888888
Q ss_pred EeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcc
Q 014726 301 DLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 301 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~ 377 (419)
++++|++++ +|..+..+++|++|++++|++. .+|..+ .+++|++|++++|++++. | +.. +.++ +.+.+|++.
T Consensus 278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 888888874 5556667788888888888887 454433 367888888888888743 3 333 4444 677777776
Q ss_pred c
Q 014726 378 A 378 (419)
Q Consensus 378 ~ 378 (419)
.
T Consensus 353 ~ 353 (390)
T 3o6n_A 353 C 353 (390)
T ss_dssp H
T ss_pred c
Confidence 5
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-34 Score=290.93 Aligned_cols=298 Identities=17% Similarity=0.151 Sum_probs=202.2
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 47889999999998888888999999999999999998778888999999999999999998888888999999999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccc--eeeccCCcCc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA--DLRLQGTLLE 236 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~l~~n~l~ 236 (419)
++|++++..+..+..+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ +|++++|.++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99998876677788888999999999888864434455588888888888888877777777777777 6777777665
Q ss_pred ccchhh--------------------------------------------------------------------------
Q 014726 237 GPIPRS-------------------------------------------------------------------------- 242 (419)
Q Consensus 237 ~~~~~~-------------------------------------------------------------------------- 242 (419)
+..|..
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 444333
Q ss_pred -cccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCc-cccCCCC
Q 014726 243 -FRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPT-SLQDLST 320 (419)
Q Consensus 243 -~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~ 320 (419)
|..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 4444455555555554442 222344455555555555555544444555555555555555555444333 2555556
Q ss_pred CcEEEccCCcCcccC--CCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcc
Q 014726 321 LQYLYLGNNNLSGEL--PVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 321 L~~L~L~~N~l~~~~--p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~ 377 (419)
|++|++++|.+.+.. +..+ .+++|++|++++|.+++..|..|.. +.++ +.+.+|.+.
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 666666666555433 3222 3566666666666666655655555 5554 444444443
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.6e-34 Score=288.52 Aligned_cols=288 Identities=17% Similarity=0.128 Sum_probs=217.9
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.+++.++.+....+..+..+++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 46788999998887665666889999999999999999878889999999999999999999888888999999999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.. +..+++|+.|++++|.+++.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence 999999766666899999999999999999888889999999999999999998653 34456666666666655421
Q ss_pred ------------------chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEE
Q 014726 239 ------------------IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLL 300 (419)
Q Consensus 239 ------------------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 300 (419)
++..+ .++|+.|++++|.+.. ...+..+++|++|+|++|.+++..|..++.+++|+.|
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 11111 2456666666666554 2556677777777777777777777777777777777
Q ss_pred EeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcc
Q 014726 301 DLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 301 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~ 377 (419)
+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..+ .+++|+.|+|++|.+++. | +.. +.++ +++.+|++.
T Consensus 284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 777777774 4555566777777777777777 455433 357777777777777643 3 222 3443 666677665
Q ss_pred c
Q 014726 378 A 378 (419)
Q Consensus 378 ~ 378 (419)
+
T Consensus 359 ~ 359 (597)
T 3oja_B 359 C 359 (597)
T ss_dssp H
T ss_pred C
Confidence 4
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.5e-34 Score=287.62 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=82.0
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..|..+..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 46778888888887766677888888888888888887766777888888888888888877 55655 6778888888
Q ss_pred cccccCC-CCChhccCCCCccceecccccccc
Q 014726 159 SSNNFFG-PLPKELGKLTSLQQLYIDSSGVTG 189 (419)
Q Consensus 159 s~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~ 189 (419)
++|++++ ..|..|+++++|++|++++|.+.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 8887775 345677777788777777777654
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-34 Score=286.57 Aligned_cols=153 Identities=23% Similarity=0.284 Sum_probs=79.3
Q ss_pred ccccceeeccCCcCcccchh---hcccCCCCCeEEcCCCCCCCCCc--hhhcCCCCCCEEeccCCcCcccCCccccCCCC
Q 014726 222 LTELADLRLQGTLLEGPIPR---SFRALNKLEDLRIGDLSAEDSTL--DFLESQKSLSILSLRNCRVSGKIPDQLGTFAK 296 (419)
Q Consensus 222 l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 296 (419)
+++|++|++++|.+++.+|. .+..+++|+.|++++|.+..... ..+..+++|++|++++|+++ .+|..+..+++
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~ 411 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTT
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccc
Confidence 34444444444444443322 23444555555555554443321 33556666666666666666 45655666666
Q ss_pred CCEEEeecCcccccCCccc------------------cCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccC
Q 014726 297 LQLLDLSFNKLTGQIPTSL------------------QDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNL 358 (419)
Q Consensus 297 L~~L~L~~n~l~~~~p~~~------------------~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~ 358 (419)
|++|++++|+++ .+|..+ ..+++|++|++++|+++ .+|....+++|++|+|++|++++..
T Consensus 412 L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 412 MRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp CCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCC
T ss_pred ccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcC
Confidence 666666666654 222211 13455555555555555 4444334556666666666666555
Q ss_pred Cccccc-CCce-eEeecCCcc
Q 014726 359 PRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 359 p~~~~~-~~l~-~~~~~n~~~ 377 (419)
|..+.. +.++ +++.+|++.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TTGGGGCTTCCEEECCSSCBC
T ss_pred HHHHhcCcccCEEEecCCCcc
Confidence 544544 4443 455555554
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-33 Score=286.36 Aligned_cols=302 Identities=21% Similarity=0.204 Sum_probs=228.7
Q ss_pred CcceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCcccee
Q 014726 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (419)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 156 (419)
...+++.|+++++.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 34567777777777776667777777777777777777776667777777777777777777775555667777777777
Q ss_pred eccccccCC-CCChhccCCCCccceecccccccccCChh-----------------------------------------
Q 014726 157 SFSSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQE----------------------------------------- 194 (419)
Q Consensus 157 ~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~----------------------------------------- 194 (419)
++++|.+.+ .+|..|+++++|++|++++|++++..+..
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence 777777664 45666777777777766666544322110
Q ss_pred --------------------------------------------------------------------------------
Q 014726 195 -------------------------------------------------------------------------------- 194 (419)
Q Consensus 195 -------------------------------------------------------------------------------- 194 (419)
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence
Q ss_pred ----------------------------------------------------hcCCCCCcEEEccCCcCCCC--------
Q 014726 195 ----------------------------------------------------FANLKSLRILWASDNLFTGK-------- 214 (419)
Q Consensus 195 ----------------------------------------------------~~~l~~L~~L~l~~n~l~~~-------- 214 (419)
+..+++|++|++++|.+++.
T Consensus 294 ~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 294 GVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp SCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred CccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 11223444444444444322
Q ss_pred -----------------CchhhcCccccceeeccCCcCcccch-hhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEE
Q 014726 215 -----------------IPEFFGTLTELADLRLQGTLLEGPIP-RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSIL 276 (419)
Q Consensus 215 -----------------~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 276 (419)
++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 22345566777777777777776666 688999999999999999988888889999999999
Q ss_pred eccCCcCcc-cCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCC
Q 014726 277 SLRNCRVSG-KIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPL 354 (419)
Q Consensus 277 ~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l 354 (419)
++++|.+++ .+|..++.+++|++|++++|++++..|..+..+++|++|++++|++++..|..+ .+++|++|++++|++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 999999997 478899999999999999999999889999999999999999999998878766 479999999999999
Q ss_pred cccCCccccc-C-Cce-eEeecCCcccC
Q 014726 355 SGNLPRNFAK-G-GLS-MNVIGSSINAN 379 (419)
Q Consensus 355 ~~~~p~~~~~-~-~l~-~~~~~n~~~~~ 379 (419)
+ .+|..+.. + .++ +++.+|++.++
T Consensus 534 ~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 534 E-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp C-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred c-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 9 67777776 4 465 78888988863
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=294.58 Aligned_cols=300 Identities=19% Similarity=0.188 Sum_probs=240.9
Q ss_pred cceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccC-CccccCCCCCcEeecccCcCCCCCCCCcccCCcccee
Q 014726 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSI-PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 156 (419)
..+++.|++++|.+.+..|..|..+++|++|++++|...+.+ |..|+++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 357999999999999888999999999999999999766565 7789999999999999999998889999999999999
Q ss_pred eccccccCCCCChh--ccCCCCccceecccccccccCC-hhhcCCCCCcEEEccCCcCCCCCchhhcCc--cccceeecc
Q 014726 157 SFSSNNFFGPLPKE--LGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPEFFGTL--TELADLRLQ 231 (419)
Q Consensus 157 ~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~ 231 (419)
++++|.+++..|.. |.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999998866665 8999999999999999987654 579999999999999999998888888776 788888888
Q ss_pred CCcCcccchhhcccCCC------CCeEEcCCCCCCCCCchh------------------------------------hcC
Q 014726 232 GTLLEGPIPRSFRALNK------LEDLRIGDLSAEDSTLDF------------------------------------LES 269 (419)
Q Consensus 232 ~n~l~~~~~~~~~~l~~------L~~L~L~~n~~~~~~~~~------------------------------------~~~ 269 (419)
.|.+.+..+..+..+.+ |+.|++++|.+....+.. +..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 88888777766665554 888888877554322111 111
Q ss_pred --CCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccE
Q 014726 270 --QKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIA 346 (419)
Q Consensus 270 --~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~ 346 (419)
.++|++|++++|.+.+..+..+..+++|+.|++++|++.+..|..|..+++|++|++++|++.+..|..+ .+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 2578888888888887777778888888888888888887777778888888888888888876656554 4678888
Q ss_pred EEcccCCCcccCCccccc-CCce-eEeecCCcc
Q 014726 347 LDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 347 L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~ 377 (419)
|++++|.+++..+..|.. +.++ +++.+|.+.
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 888888887666666665 6665 555556554
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.6e-34 Score=295.84 Aligned_cols=292 Identities=21% Similarity=0.332 Sum_probs=184.9
Q ss_pred CcceeEEEEeecCcccccCChhhhCCCCCCEEECcCCc-CCc-cCCccccCCC-------CCcEeecccCcCCCCCCC--
Q 014726 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNV-LNG-SIPAEIGQLS-------NMQYLSLGINNFTGRVPT-- 145 (419)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~-- 145 (419)
...+++.|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+++++ +|++|++++|.++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 34578999999999999999999999999999999998 887 6777665554 8888888888888 7787
Q ss_pred CcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCC-CcEEEccCCcCCCCCchhhcCccc
Q 014726 146 ELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKS-LRILWASDNLFTGKIPEFFGTLTE 224 (419)
Q Consensus 146 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~ 224 (419)
.|+++++|++|++++|+++ .+| .|+.+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 7888888888888888887 667 7888888888888888888 77777888887 888888888877 56665554433
Q ss_pred --cceeeccCCcCcccchhhc---c--cCCCCCeEEcCCCCCCCCCchhhcCCCC-------------------------
Q 014726 225 --LADLRLQGTLLEGPIPRSF---R--ALNKLEDLRIGDLSAEDSTLDFLESQKS------------------------- 272 (419)
Q Consensus 225 --L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~------------------------- 272 (419)
|+.|++++|.+.+.+|... . .+++|+.|++++|.+...+...+..+++
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 6666666666654433211 1 1224455555555444333333334444
Q ss_pred ------CCEEeccCCcCcccCCcccc--CCCCCCEEEeecCcccccCCccccCCCCCcEEEccC------CcCcccCCCC
Q 014726 273 ------LSILSLRNCRVSGKIPDQLG--TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGN------NNLSGELPVN 338 (419)
Q Consensus 273 ------L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~~p~~ 338 (419)
|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 455555555444 3444443 44555555555555543 444444555555555543 4444444433
Q ss_pred C-CCCCccEEEcccCCCcccCCcccccCCce-eEeecCCcc
Q 014726 339 I-IAPNLIALDVSYNPLSGNLPRNFAKGGLS-MNVIGSSIN 377 (419)
Q Consensus 339 ~-~~~~L~~L~Ls~N~l~~~~p~~~~~~~l~-~~~~~n~~~ 377 (419)
+ .+++|+.|+|++|++ +.+|..+.. .|+ +++++|++.
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~~-~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKLTP-QLYILDIADNPNI 840 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCCS-SSCEEECCSCTTC
T ss_pred HhcCCCCCEEECCCCCC-CccCHhhcC-CCCEEECCCCCCC
Confidence 3 244555555555555 344444332 222 444444443
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=282.24 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=74.5
Q ss_pred cccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCC-ccccCCCCCCEEEeecCcccccCCccccCCCCC
Q 014726 243 FRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP-DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 321 (419)
Q Consensus 243 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 321 (419)
+..+++|++|++++|.+...... +..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..+++|
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 33344444444444433222212 4455555555555555554433 345566666666666666666666666666666
Q ss_pred cEEEccCCcCc-ccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcc
Q 014726 322 QYLYLGNNNLS-GELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 322 ~~L~L~~N~l~-~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~ 377 (419)
++|++++|++. +.+|..+ .+++|++|++++|++++..|..+.. +.++ +++.+|.+.
T Consensus 448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 66777666665 3455444 3566777777777776666666655 5555 444455443
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=293.50 Aligned_cols=111 Identities=21% Similarity=0.191 Sum_probs=60.5
Q ss_pred cceeEEEEeecCcccccC-ChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCC--cccCCccc
Q 014726 78 SCHITHLKIYALDIMGEL-PSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTE--LGNLTKLI 154 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~ 154 (419)
..+++.|+++++...+.+ |..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++.+|.. |.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 345556666665444444 444555666666666666655555555556666666666666555444332 55555555
Q ss_pred eeeccccccCCCCC-hhccCCCCccceeccccccc
Q 014726 155 SLSFSSNNFFGPLP-KELGKLTSLQQLYIDSSGVT 188 (419)
Q Consensus 155 ~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 188 (419)
+|++++|.+++..+ ..|+++++|++|++++|.++
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 55555555554433 34555555555555555443
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-32 Score=284.11 Aligned_cols=290 Identities=19% Similarity=0.229 Sum_probs=234.9
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.++++|+++++.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 47999999999998877778999999999999999999888888999999999999999998655567999999999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhc--CccccceeeccCCcCc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFG--TLTELADLRLQGTLLE 236 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~ 236 (419)
++|++++..|..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999887778899999999999999999988888899999999999999999987776654 4588999999999988
Q ss_pred ccchhhcccC---------------------------CCCCeEEcCCCCCCCCCchhhcCCC--CCCEEeccCCcCcccC
Q 014726 237 GPIPRSFRAL---------------------------NKLEDLRIGDLSAEDSTLDFLESQK--SLSILSLRNCRVSGKI 287 (419)
Q Consensus 237 ~~~~~~~~~l---------------------------~~L~~L~L~~n~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~ 287 (419)
+..|..+..+ ++|+.|++++|.+....+..+..++ +|++|++++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 7777666544 4566677777766655555666554 4888888888888777
Q ss_pred CccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCccc-----CCC----CC-CCCCccEEEcccCCCccc
Q 014726 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE-----LPV----NI-IAPNLIALDVSYNPLSGN 357 (419)
Q Consensus 288 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~----~~-~~~~L~~L~Ls~N~l~~~ 357 (419)
|..++.+++|++|++++|++.+..|..+..+++|++|++++|...+. +|. .+ .+++|++|++++|.+++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 78888888888888888888877777777788888888877655432 221 11 357777888888877776
Q ss_pred CCccccc-CCce
Q 014726 358 LPRNFAK-GGLS 368 (419)
Q Consensus 358 ~p~~~~~-~~l~ 368 (419)
.|..|.. +.++
T Consensus 345 ~~~~~~~l~~L~ 356 (680)
T 1ziw_A 345 KSNMFTGLINLK 356 (680)
T ss_dssp CTTTTTTCTTCC
T ss_pred ChhHhccccCCc
Confidence 6666655 5555
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=277.90 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=136.0
Q ss_pred hhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCc-hhhcCCCCCCEEeccCCcCcccCCccccCCC
Q 014726 217 EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL-DFLESQKSLSILSLRNCRVSGKIPDQLGTFA 295 (419)
Q Consensus 217 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 295 (419)
..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|..+..++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 444556666666777766664433 48899999999999998876643 5688999999999999999988999999999
Q ss_pred CCCEEEeecCccc-ccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEe
Q 014726 296 KLQLLDLSFNKLT-GQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNV 371 (419)
Q Consensus 296 ~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~ 371 (419)
+|++|++++|++. +.+|..+..+++|++|++++|++++..|..+ .+++|++|++++|++++..|..|.. +.++ +++
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 9999999999998 5789999999999999999999998878666 4799999999999999888877777 7776 778
Q ss_pred ecCCccc
Q 014726 372 IGSSINA 378 (419)
Q Consensus 372 ~~n~~~~ 378 (419)
.+|++.+
T Consensus 526 ~~N~~~~ 532 (570)
T 2z63_A 526 HTNPWDC 532 (570)
T ss_dssp CSSCBCC
T ss_pred cCCcccC
Confidence 8888875
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=276.21 Aligned_cols=292 Identities=20% Similarity=0.232 Sum_probs=229.0
Q ss_pred CcceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCC-CCCCCcccCCccce
Q 014726 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG-RVPTELGNLTKLIS 155 (419)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~ 155 (419)
...+++.|+++++.+.+..|..|..+++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 4568999999999998888889999999999999999998 56665 78999999999999986 46788999999999
Q ss_pred eeccccccCCCCChhccCCCCc--cceecccccc--cccCChhhcCCC--------------------------------
Q 014726 156 LSFSSNNFFGPLPKELGKLTSL--QQLYIDSSGV--TGSIPQEFANLK-------------------------------- 199 (419)
Q Consensus 156 L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~-------------------------------- 199 (419)
|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 120 L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 120 LGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp EEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred EEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 9998888754 234444444 5555555554 333333332211
Q ss_pred ---------------------------------------------------CCcEEEccCCcCCCCCchhh---------
Q 014726 200 ---------------------------------------------------SLRILWASDNLFTGKIPEFF--------- 219 (419)
Q Consensus 200 ---------------------------------------------------~L~~L~l~~n~l~~~~~~~l--------- 219 (419)
+|++|++++|++++.+|..+
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred ccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc
Confidence 44444444444443333222
Q ss_pred --------------------------------------------cCccccceeeccCCcCcccchhhcccCCCCCeEEcC
Q 014726 220 --------------------------------------------GTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIG 255 (419)
Q Consensus 220 --------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 255 (419)
..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 277 ~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred eeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 577899999999999998899999999999999999
Q ss_pred CCCCCCC--CchhhcCCCCCCEEeccCCcCcccCCc-cccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCc
Q 014726 256 DLSAEDS--TLDFLESQKSLSILSLRNCRVSGKIPD-QLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 256 ~n~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
+|.+... .+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 9998863 346688999999999999999975665 478899999999999999988877664 79999999999999
Q ss_pred ccCCCCC-CCCCccEEEcccCCCcccCCcc-ccc-CCce-eEeecCCccc
Q 014726 333 GELPVNI-IAPNLIALDVSYNPLSGNLPRN-FAK-GGLS-MNVIGSSINA 378 (419)
Q Consensus 333 ~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~-~~~-~~l~-~~~~~n~~~~ 378 (419)
.+|..+ .+++|++|++++|+++ .+|.. +.. +.++ +++.+|++.+
T Consensus 435 -~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 435 -SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 788655 5899999999999999 57765 655 6665 7888888876
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.9e-32 Score=256.19 Aligned_cols=285 Identities=22% Similarity=0.273 Sum_probs=232.1
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecc
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 159 (419)
+++.++++++.+. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5677888877765 4555443 689999999999997667789999999999999999998889999999999999999
Q ss_pred ccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCC--CCchhhcCccccceeeccCCcCcc
Q 014726 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG--KIPEFFGTLTELADLRLQGTLLEG 237 (419)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~ 237 (419)
+|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99988 4555544 799999999999998777789999999999999999863 667788899999999999999884
Q ss_pred cchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccC
Q 014726 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (419)
Q Consensus 238 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 317 (419)
+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 554443 78999999999888777788889999999999999999877778888999999999999998 78888889
Q ss_pred CCCCcEEEccCCcCcccCCCCCC-------CCCccEEEcccCCCcc--cCCccccc-CCce-eEeecC
Q 014726 318 LSTLQYLYLGNNNLSGELPVNII-------APNLIALDVSYNPLSG--NLPRNFAK-GGLS-MNVIGS 374 (419)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~~-------~~~L~~L~Ls~N~l~~--~~p~~~~~-~~l~-~~~~~n 374 (419)
+++|++|++++|++++..+..+. .+.++.|++++|++.. ..|..|.. ..++ +++.+|
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 99999999999999854443331 3678899999999863 33445554 5565 444444
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.2e-32 Score=279.26 Aligned_cols=317 Identities=21% Similarity=0.230 Sum_probs=204.6
Q ss_pred eEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCC-----CCCC----CcccCC
Q 014726 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG-----RVPT----ELGNLT 151 (419)
Q Consensus 81 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----~~p~----~~~~l~ 151 (419)
++.|+++++.+.+..|..+..+++|++|++++|.+++..|..|.++++|++|++++|...+ .+|. .|..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 6666776666666666666666777777777776665555555555555555555443221 1121 445555
Q ss_pred ccceeeccccccCCCCChhccCCCCccceecc----------------------------cccccccCChhhcCCCCCcE
Q 014726 152 KLISLSFSSNNFFGPLPKELGKLTSLQQLYID----------------------------SSGVTGSIPQEFANLKSLRI 203 (419)
Q Consensus 152 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~----------------------------~n~l~~~~~~~~~~l~~L~~ 203 (419)
+|++|++++|.+.+..+..|..+++|++|+++ +|++++..|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 66666666666655555555555555555444 44444445566666777777
Q ss_pred EEccCCcCCCCCc-hhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCC--CCchhhcCCCCCCEEeccC
Q 014726 204 LWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED--STLDFLESQKSLSILSLRN 280 (419)
Q Consensus 204 L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~Ls~ 280 (419)
|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 7777777765444 566667777777777777666666666777777777777766542 3455677788888888888
Q ss_pred CcCcccCCccccCCCCCCEEEeecCcccccCC--------ccccCCCCCcEEEccCCcCcccCCCC-C-CCCCccEEEcc
Q 014726 281 CRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP--------TSLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVS 350 (419)
Q Consensus 281 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~L~Ls 350 (419)
|.+++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|.. + .+++|++|+++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECC
Confidence 88887666778888888888888888875321 23677788888888888888 56543 3 47888888888
Q ss_pred cCCCcccCCccccc-CCce-eEeecCCcccCCCcccccchh---------hhccccCCcCCCCC
Q 014726 351 YNPLSGNLPRNFAK-GGLS-MNVIGSSINANNLQDGKALGM---------MQCLHSNTKCSNKV 403 (419)
Q Consensus 351 ~N~l~~~~p~~~~~-~~l~-~~~~~n~~~~~~~~~~~p~~~---------~~~~~~~~~c~~~~ 403 (419)
+|.+++..+..|.. ..++ +++.+|.+.+ ..|..+ .....++..|+|..
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITS-----VEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCB-----CCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCc-----cChhHhcccccccCEEEccCCCcccCCcc
Confidence 88888655555555 6666 5666665543 222211 22557788888864
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3e-32 Score=257.20 Aligned_cols=283 Identities=23% Similarity=0.301 Sum_probs=238.4
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecc
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 159 (419)
+++.++++++++. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6778888888875 5666553 689999999999997777889999999999999999998888899999999999999
Q ss_pred ccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCC--CCCchhhcCccccceeeccCCcCcc
Q 014726 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFT--GKIPEFFGTLTELADLRLQGTLLEG 237 (419)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (419)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++ +..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 5555554 89999999999999776777999999999999999996 3667777777 99999999999985
Q ss_pred cchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccC
Q 014726 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (419)
Q Consensus 238 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 317 (419)
+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 555443 79999999999998888788999999999999999999877778999999999999999998 88888999
Q ss_pred CCCCcEEEccCCcCcccCCCCCC-------CCCccEEEcccCCCc--ccCCccccc-CCceeEeec
Q 014726 318 LSTLQYLYLGNNNLSGELPVNII-------APNLIALDVSYNPLS--GNLPRNFAK-GGLSMNVIG 373 (419)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~~-------~~~L~~L~Ls~N~l~--~~~p~~~~~-~~l~~~~~~ 373 (419)
+++|++|++++|++++..+..+. .+.|+.|++++|++. +..|..|.. ..++.....
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 99999999999999854443331 367899999999987 455555655 667643333
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7e-32 Score=272.74 Aligned_cols=293 Identities=20% Similarity=0.243 Sum_probs=231.8
Q ss_pred CCcceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCC-CCCCCcccCCccc
Q 014726 76 SNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG-RVPTELGNLTKLI 154 (419)
Q Consensus 76 ~~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~ 154 (419)
....+++.|++++|.+.+..|..|..+++|++|++++|.++ .+|.. .+++|++|++++|.+++ ..|..|+++++|+
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 44568999999999999888999999999999999999998 67765 89999999999999986 3468899999999
Q ss_pred eeeccccccCCCCChhccCCCCc--cceecccccc--cccCChhhcCCC-------------------------------
Q 014726 155 SLSFSSNNFFGPLPKELGKLTSL--QQLYIDSSGV--TGSIPQEFANLK------------------------------- 199 (419)
Q Consensus 155 ~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~------------------------------- 199 (419)
+|++++|++.+. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 150 ~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 226 (562)
T 3a79_B 150 FLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226 (562)
T ss_dssp EEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE
T ss_pred EEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEe
Confidence 999999998753 34444444 8888888877 555554444322
Q ss_pred --------------------------------------------------CCcEEEccCCcCCCCCchhh----------
Q 014726 200 --------------------------------------------------SLRILWASDNLFTGKIPEFF---------- 219 (419)
Q Consensus 200 --------------------------------------------------~L~~L~l~~n~l~~~~~~~l---------- 219 (419)
+|++|++++|.+++.+|..+
T Consensus 227 ~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~ 306 (562)
T 3a79_B 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306 (562)
T ss_dssp EEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred cccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence 66777777777776555443
Q ss_pred -------------------------------------------cCccccceeeccCCcCcccchhhcccCCCCCeEEcCC
Q 014726 220 -------------------------------------------GTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGD 256 (419)
Q Consensus 220 -------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 256 (419)
..+++|++|++++|.+++..|..+.++++|+.|++++
T Consensus 307 L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp EEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred eehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence 5677888889999888887888888889999999998
Q ss_pred CCCCCCC--chhhcCCCCCCEEeccCCcCcccCCc-cccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcc
Q 014726 257 LSAEDST--LDFLESQKSLSILSLRNCRVSGKIPD-QLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 333 (419)
Q Consensus 257 n~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 333 (419)
|.+.... +..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~- 463 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-
Confidence 8887653 35578888999999999998874554 477888999999999998877766554 68999999999888
Q ss_pred cCCCCC-CCCCccEEEcccCCCcccCCcc-ccc-CCce-eEeecCCccc
Q 014726 334 ELPVNI-IAPNLIALDVSYNPLSGNLPRN-FAK-GGLS-MNVIGSSINA 378 (419)
Q Consensus 334 ~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~-~~~-~~l~-~~~~~n~~~~ 378 (419)
.+|... .+++|++|+|++|+++ .+|.. +.. +.++ +++.+|++.+
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 676554 4788999999999998 56655 555 6665 7788888775
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=4.1e-33 Score=262.41 Aligned_cols=277 Identities=19% Similarity=0.260 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHHhcCC-C----CCCC---CCCCCCCCCCCCCCCCCCCCCeeecCC------CCcceeEEEEeecCcc
Q 014726 26 TDSAEVDALNKLIDYWNL-R----SKIN---LTTIDPCTRNASWASENANPRVACDCT------SNSCHITHLKIYALDI 91 (419)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~-~----~~w~---~~~~d~c~~~~~w~~~~~~~~~~c~~~------~~~~~v~~L~l~~~~l 91 (419)
...+|.+||.+|+..+.. . ..|. ....++|. | .|+.|... ....+++.|+++++.+
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~----~------~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l 93 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET----R------TGRALKATADLLEDATQPGRVALELRSVPL 93 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC----S------HHHHHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc----c------CCcchhhhHHHHhcccccceeEEEccCCCc
Confidence 445789999999987732 2 3452 22255665 7 56777421 1124566777776666
Q ss_pred cccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhc
Q 014726 92 MGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKEL 171 (419)
Q Consensus 92 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 171 (419)
. .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+
T Consensus 94 ~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 94 P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp S-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred h-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 5 56666666667777777766666 66666666666777777766666 556666666666666666666666666544
Q ss_pred cCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCe
Q 014726 172 GKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLED 251 (419)
Q Consensus 172 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 251 (419)
... ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+..+++|++
T Consensus 171 ~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 171 AST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred hhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 320 00011223555555555555555 444455555555555555555553 3344555555556
Q ss_pred EEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcC
Q 014726 252 LRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (419)
Q Consensus 252 L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 331 (419)
|++++|.+....+..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 66655555555555566667777777777777777777778888888888888888778888888888888888777665
Q ss_pred c
Q 014726 332 S 332 (419)
Q Consensus 332 ~ 332 (419)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 5
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.1e-32 Score=275.38 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=120.7
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
..+++|+|++|.+++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999998777788999999999999999999777778999999999999999999766678999999999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccc-cCChhhcCCCCCcEEEccCCcCCC
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTG 213 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ 213 (419)
++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|++++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9999998777789999999999999999875 467888889999999999887654
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.9e-31 Score=250.25 Aligned_cols=268 Identities=19% Similarity=0.208 Sum_probs=232.4
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 47899999999998877778999999999999999999877999999999999999999998 6676554 79999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccc--cCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTG--SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
++|.+++..+..|..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence 9999998878889999999999999999963 677889999999999999999985 454443 79999999999999
Q ss_pred ccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCcccc
Q 014726 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ 316 (419)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 316 (419)
+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 888899999999999999999998877778899999999999999999 7888899999999999999999976666664
Q ss_pred C------CCCCcEEEccCCcCcc-cC-CCCC-CCCCccEEEcccCC
Q 014726 317 D------LSTLQYLYLGNNNLSG-EL-PVNI-IAPNLIALDVSYNP 353 (419)
Q Consensus 317 ~------l~~L~~L~L~~N~l~~-~~-p~~~-~~~~L~~L~Ls~N~ 353 (419)
. .+.++.|++++|.+.. .+ |..+ .+.+++.++|++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3 3789999999999864 23 3333 47899999999985
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1.8e-31 Score=257.54 Aligned_cols=272 Identities=22% Similarity=0.179 Sum_probs=229.0
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..+..+..+++|++|++++|.+++..|..|+++++|++|++++|.++...+..|.++++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 57999999999998877788999999999999999999877888999999999999999999554455799999999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCC-------------------cCCCCCchhh
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN-------------------LFTGKIPEFF 219 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~l 219 (419)
++|.+.+..+..+..+++|++|++++|.+++.. +..+++|+.|++++| .+... +.
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~-- 222 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RG-- 222 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE-EC--
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeec-cc--
Confidence 999999888888999999999999999998542 334455555555544 44422 21
Q ss_pred cCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCE
Q 014726 220 GTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQL 299 (419)
Q Consensus 220 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 299 (419)
...++|++|++++|.+++. ..+..+++|++|++++|.+....+..+..+++|++|++++|++++ +|..+..+++|++
T Consensus 223 ~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 299 (390)
T ss_dssp CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCE
T ss_pred cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCE
Confidence 2346899999999999864 578999999999999999988778889999999999999999984 6666788999999
Q ss_pred EEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCccc
Q 014726 300 LDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNF 362 (419)
Q Consensus 300 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~ 362 (419)
|++++|++. .+|..+..+++|++|++++|++++ ++ ...+++|++|++++|+++..-...+
T Consensus 300 L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred EECCCCcce-ecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEcCCCCccchhHHHH
Confidence 999999998 677778889999999999999984 44 3357899999999999987544333
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.5e-31 Score=249.92 Aligned_cols=267 Identities=21% Similarity=0.225 Sum_probs=232.3
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..|..+..+++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 47899999999998877888999999999999999999878889999999999999999998 6676555 89999999
Q ss_pred cccccCCCCChhccCCCCccceeccccccc--ccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVT--GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
++|.+.+..+..|..+++|++|++++|.++ +..+..+..+ +|+.|++++|++++ +|..+. ++|++|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 999999777778999999999999999996 3667788887 99999999999986 454443 79999999999999
Q ss_pred ccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCcccc
Q 014726 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ 316 (419)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 316 (419)
+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+.
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 888889999999999999999999888888999999999999999999 7888899999999999999999976666665
Q ss_pred C------CCCCcEEEccCCcCc--ccCCCCC-CCCCccEEEcccCC
Q 014726 317 D------LSTLQYLYLGNNNLS--GELPVNI-IAPNLIALDVSYNP 353 (419)
Q Consensus 317 ~------l~~L~~L~L~~N~l~--~~~p~~~-~~~~L~~L~Ls~N~ 353 (419)
. .+.|+.|++++|.+. +..|..+ .+++|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4 367999999999987 3344333 47899999999985
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.98 E-value=4.3e-32 Score=258.38 Aligned_cols=263 Identities=22% Similarity=0.227 Sum_probs=222.1
Q ss_pred cCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccC
Q 014726 94 ELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (419)
Q Consensus 94 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (419)
.+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 4565444 48999999999998666668999999999999999999877888999999999999999998666666899
Q ss_pred CCCccceecccccccccCC-hhhcCCCCCcEEEccCC-cCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCe
Q 014726 174 LTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDN-LFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLED 251 (419)
Q Consensus 174 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 251 (419)
+++|++|++++|+++...+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 9999999999999985333 47889999999999998 466666778899999999999999999888999999999999
Q ss_pred EEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccc---cCCCCCCEEEeecCcccc----cCCccccCCCCCcEE
Q 014726 252 LRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQL---GTFAKLQLLDLSFNKLTG----QIPTSLQDLSTLQYL 324 (419)
Q Consensus 252 L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L 324 (419)
|++++|.+.......+..+++|++|++++|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|++|
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 9999998866555566678999999999999987555443 346789999999998876 467788899999999
Q ss_pred EccCCcCcccCCCCC--CCCCccEEEcccCCCcccCC
Q 014726 325 YLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLP 359 (419)
Q Consensus 325 ~L~~N~l~~~~p~~~--~~~~L~~L~Ls~N~l~~~~p 359 (419)
++++|+++ .+|... .+++|++|++++|++++..|
T Consensus 283 ~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999 677654 47999999999999998776
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2e-30 Score=246.21 Aligned_cols=280 Identities=23% Similarity=0.317 Sum_probs=216.7
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++. + +.+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEEC
Confidence 468888888887753 34 37888899999999988874 444 8888899999999988874 3 35888889999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.
T Consensus 118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred cCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 98888754 33 7888889999998886654444 48888899999999888875443 77888899999998888754
Q ss_pred chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCC
Q 014726 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (419)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 318 (419)
.+ +..+++|+.|++++|.+..... +..+++|++|++++|.+++. +. +..+++|++|++++|.+++ + ..+..+
T Consensus 193 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l 264 (347)
T 4fmz_A 193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDL 264 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTC
T ss_pred cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcC
Confidence 33 7788889999998887766543 77888899999999888843 33 7888889999999888874 3 467788
Q ss_pred CCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCccc
Q 014726 319 STLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 378 (419)
Q Consensus 319 ~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~~ 378 (419)
++|++|++++|++++ ++....+++|++|++++|++++..|..+.. +.++ +++.+|++..
T Consensus 265 ~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 265 TKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp TTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 889999999988884 453335788899999999888888877777 7775 6666666553
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5.3e-30 Score=243.25 Aligned_cols=278 Identities=27% Similarity=0.368 Sum_probs=235.1
Q ss_pred cceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceee
Q 014726 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 157 (419)
..+++.|+++++.+.+. +. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+.+. +. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 45899999999988754 44 9999999999999999984 4 4699999999999999999854 43 88999999999
Q ss_pred ccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcc
Q 014726 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (419)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (419)
+++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 99997665544 48999999999999999985433 8899999999999999986543 8889999999999999986
Q ss_pred cchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccC
Q 014726 238 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (419)
Q Consensus 238 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 317 (419)
..+ +..+++|++|++++|.+..... +..+++|++|++++|.+++ + ..+..+++|++|++++|++++. ..+..
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~ 285 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNN 285 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGG
T ss_pred Cch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcC
Confidence 544 8899999999999998877544 8899999999999999985 3 4688999999999999999854 46888
Q ss_pred CCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCc
Q 014726 318 LSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSI 376 (419)
Q Consensus 318 l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~ 376 (419)
+++|++|++++|++++..|..+ .+++|++|++++|++++..| +.. +.++ +++.+|.+
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 9999999999999997776544 47999999999999997766 555 6665 66666665
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.3e-31 Score=266.19 Aligned_cols=275 Identities=22% Similarity=0.191 Sum_probs=233.6
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 57899999999999888889999999999999999999888888999999999999999999666666899999999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCC------------------CCchhhc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG------------------KIPEFFG 220 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~~l~ 220 (419)
++|.+++..|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+++ .++..
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~-- 229 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-- 229 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--
Confidence 999999988889999999999999999998643 3344555555555554442 11111
Q ss_pred CccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEE
Q 014726 221 TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLL 300 (419)
Q Consensus 221 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 300 (419)
..++|+.|++++|.+++ +..+..+++|+.|++++|.+....+..+..+++|++|+|++|.+++ +|..+..+++|+.|
T Consensus 230 ~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 306 (597)
T 3oja_B 230 VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 306 (597)
T ss_dssp CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence 23579999999999986 4678999999999999999988888889999999999999999995 67777889999999
Q ss_pred EeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCccccc
Q 014726 301 DLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK 364 (419)
Q Consensus 301 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 364 (419)
+|++|.+. .+|..+..+++|++|++++|.+++ +| ...+++|+.|++++|++++..+..+..
T Consensus 307 ~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~-~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred ECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC-hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 99999999 788888899999999999999985 44 335789999999999998765544443
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.1e-31 Score=268.54 Aligned_cols=183 Identities=19% Similarity=0.139 Sum_probs=163.1
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..|..+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47999999999999888889999999999999999999888889999999999999999999777777999999999999
Q ss_pred cccccCC-CCChhccCCCCccceecccccccccCC-hhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 159 SSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 159 s~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
++|.+++ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..+++|++|+++.|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999986 356789999999999999998554554 68999999999999999999989999999999999999999887
Q ss_pred ccchhhcccCCCCCeEEcCCCCCCC
Q 014726 237 GPIPRSFRALNKLEDLRIGDLSAED 261 (419)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~n~~~~ 261 (419)
......+..+++|+.|++++|.+..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccchhhHhhcccccEEEccCCcccc
Confidence 4333344678999999999987765
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=2.9e-30 Score=264.17 Aligned_cols=143 Identities=23% Similarity=0.277 Sum_probs=126.2
Q ss_pred cCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccC
Q 014726 94 ELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (419)
Q Consensus 94 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (419)
.+|..+. +++++|||++|.|++..+..|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 4554432 37999999999999777788999999999999999999777889999999999999999999777788999
Q ss_pred CCCccceecccccccccCChhhcCCCCCcEEEccCCcCCC-CCchhhcCccccceeeccCCcCccc
Q 014726 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 174 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
+++|++|++++|++++..+..|+++++|++|++++|.+.+ ..|..+..+++|++|++++|++++.
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 9999999999999997777789999999999999999976 4678888999999999999877543
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=6.4e-30 Score=252.46 Aligned_cols=281 Identities=27% Similarity=0.379 Sum_probs=167.4
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..+ +..+++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence 467777777777654433 6777777777777777764332 6677777777777776664322 666666666666
Q ss_pred cccccCCCCC-------------------hhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCc---
Q 014726 159 SSNNFFGPLP-------------------KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP--- 216 (419)
Q Consensus 159 s~n~l~~~~p-------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--- 216 (419)
++|.+.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~ 219 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI 219 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccc
Confidence 6666543210 1244556666666666666532 235555666666666665554333
Q ss_pred -----------------hhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEecc
Q 014726 217 -----------------EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLR 279 (419)
Q Consensus 217 -----------------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls 279 (419)
..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+..... +..+++|++|+++
T Consensus 220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 233444455555555555543322 4555555555555555544322 5556666666666
Q ss_pred CCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCC
Q 014726 280 NCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLP 359 (419)
Q Consensus 280 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p 359 (419)
+|.+.+..+ +..+++|+.|++++|++++..| +..+++|++|++++|++++. +....+++|+.|++++|++++..|
T Consensus 296 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch
Confidence 666664332 5666777777777777765444 55667777777777777643 333356788888888888887766
Q ss_pred ccccc-CCce-eEeecCCccc
Q 014726 360 RNFAK-GGLS-MNVIGSSINA 378 (419)
Q Consensus 360 ~~~~~-~~l~-~~~~~n~~~~ 378 (419)
+.. +.++ +.+.+|.+.+
T Consensus 371 --~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 --LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GTTCTTCCEEECCCEEEEC
T ss_pred --hhcCCCCCEEeccCCcccC
Confidence 445 5555 5566666554
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.8e-29 Score=247.84 Aligned_cols=281 Identities=26% Similarity=0.329 Sum_probs=192.7
Q ss_pred cceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceee
Q 014726 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 157 (419)
..+++.|++.++.+.. +| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 3478999999998764 55 488999999999999999854 44 9999999999999999986544 99999999999
Q ss_pred ccccccCCCCChhccCCCCccceecccccccccCC-------------------hhhcCCCCCcEEEccCCcCCCCCchh
Q 014726 158 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-------------------QEFANLKSLRILWASDNLFTGKIPEF 218 (419)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-------------------~~~~~l~~L~~L~l~~n~l~~~~~~~ 218 (419)
+++|.+++..+ +..+++|++|++++|.+.+... ..+..+++|+.|++++|.+.+. ..
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~ 194 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 194 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hh
Confidence 99999986533 8999999999999998874211 1366788999999999998854 34
Q ss_pred hcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 014726 219 FGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQ 298 (419)
Q Consensus 219 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 298 (419)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+... ..+..+++|++|++++|.+++..+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 7888999999999998886554 66677777777777766543 345556666666666666554332 44555555
Q ss_pred EEEeecCcccccCC--------------------ccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccC
Q 014726 299 LLDLSFNKLTGQIP--------------------TSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNL 358 (419)
Q Consensus 299 ~L~L~~n~l~~~~p--------------------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~ 358 (419)
+|++++|++.+..+ ..+..+++|++|++++|++++..| ...+++|++|++++|++++.
T Consensus 269 ~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~- 346 (466)
T 1o6v_A 269 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV- 346 (466)
T ss_dssp EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC-
T ss_pred EEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc-
Confidence 55555555543222 013444455555555555544333 22345555555555555543
Q ss_pred Cccccc-CCce-eEeecCCcc
Q 014726 359 PRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 359 p~~~~~-~~l~-~~~~~n~~~ 377 (419)
..+.. +.++ +.+.+|.+.
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCC
T ss_pred -hhhccCCCCCEEeCCCCccC
Confidence 23444 4444 444445443
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=5.4e-30 Score=241.10 Aligned_cols=235 Identities=22% Similarity=0.275 Sum_probs=206.1
Q ss_pred CCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccce
Q 014726 101 MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 180 (419)
Q Consensus 101 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 180 (419)
..+++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 78888888999999999999998 88888899999999999999888 678888888888888
Q ss_pred ecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCC
Q 014726 181 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (419)
Q Consensus 181 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 260 (419)
++++|.+.+.+|..+.. . .....+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 88888887777765543 1 12234667899999999999998 78889999999999999999988
Q ss_pred CCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-
Q 014726 261 DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI- 339 (419)
Q Consensus 261 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~- 339 (419)
... ..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+
T Consensus 220 ~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 ALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 644 468899999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCccEEEcccCCCc
Q 014726 340 IAPNLIALDVSYNPLS 355 (419)
Q Consensus 340 ~~~~L~~L~Ls~N~l~ 355 (419)
.+++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 4899999999987765
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.1e-30 Score=240.55 Aligned_cols=248 Identities=20% Similarity=0.262 Sum_probs=156.1
Q ss_pred EEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCC--CCCCcccCCccceeeccc
Q 014726 83 HLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGR--VPTELGNLTKLISLSFSS 160 (419)
Q Consensus 83 ~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~ 160 (419)
.++.++.+++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3444444443 3444332 4777788887777733333467777777777777777622 244555667777777777
Q ss_pred cccCCCCChhccCCCCccceecccccccccCC-hhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcc-c
Q 014726 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG-P 238 (419)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~ 238 (419)
|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 7765 345556667777777777776664433 456666666666666666666566666666666666666666554 2
Q ss_pred chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCC
Q 014726 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (419)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 318 (419)
.|..+ ..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+
T Consensus 167 ~~~~~------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 167 LPDIF------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp ECSCC------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred chhHH------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 34444 445556666666666665556666667777777777777765555566667
Q ss_pred CCCcEEEccCCcCcccCCCCCC-C-CCccEEEcccCCCcccC
Q 014726 319 STLQYLYLGNNNLSGELPVNII-A-PNLIALDVSYNPLSGNL 358 (419)
Q Consensus 319 ~~L~~L~L~~N~l~~~~p~~~~-~-~~L~~L~Ls~N~l~~~~ 358 (419)
++|++|++++|++++..|..+. + ++|++|++++|++++.-
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 7777777777777766665442 3 47777777777776543
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=6.3e-30 Score=250.66 Aligned_cols=235 Identities=19% Similarity=0.191 Sum_probs=161.1
Q ss_pred cCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccC
Q 014726 94 ELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (419)
Q Consensus 94 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (419)
.+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..|..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 3444333 46777777777777666667777777777777777777666667777777777777777777665566777
Q ss_pred CCCccceecccccccccCChhhcCCCCCcEEEccCCc-CCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeE
Q 014726 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL-FTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDL 252 (419)
Q Consensus 174 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 252 (419)
+++|++|++++|.+....+..|..+++|+.|++++|. +....+..|..+++|++|++++|.++. +| .+..+++|++|
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEE
Confidence 7777777777777776555667777777777777743 333333456677777777777777763 33 36666777777
Q ss_pred EcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCc
Q 014726 253 RIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 253 ~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
++++|.+....+..+..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77777666655666666777777777777777666666677777777777777777555555666677777777777653
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.8e-31 Score=245.51 Aligned_cols=230 Identities=23% Similarity=0.267 Sum_probs=179.8
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCcc--CCccccCCCCCcEeecccCcCCCCCCCCcccCCcccee
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGS--IPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 156 (419)
.+++.|+++++.+....+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 5799999999998744444579999999999999998743 3667778999999999999998 577779999999999
Q ss_pred eccccccCCCCC-hhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCC-CCchhhcCccccceeeccCCc
Q 014726 157 SFSSNNFFGPLP-KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQGTL 234 (419)
Q Consensus 157 ~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~ 234 (419)
++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 999999986655 578999999999999999998888899999999999999999986 578889999999999999999
Q ss_pred CcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCcc
Q 014726 235 LEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTS 314 (419)
Q Consensus 235 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 314 (419)
+++..|..+..+++|++|++++|.+...... .+..+++|++|++++|++.+..|..
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------------------------PYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSG------------------------GGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChh------------------------hccCcccCCEeECCCCCCcccCHHH
Confidence 9876677776666666666655555443333 4444555555555555555444544
Q ss_pred ccCCC-CCcEEEccCCcCcc
Q 014726 315 LQDLS-TLQYLYLGNNNLSG 333 (419)
Q Consensus 315 ~~~l~-~L~~L~L~~N~l~~ 333 (419)
+..++ +|++|++++|++.+
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCCCTTCCEEECTTCCEEC
T ss_pred HHhhhccCCEEEccCCCeec
Confidence 54442 55555555555553
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.1e-29 Score=249.68 Aligned_cols=228 Identities=21% Similarity=0.175 Sum_probs=160.2
Q ss_pred CCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceec
Q 014726 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 182 (419)
Q Consensus 103 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 182 (419)
+++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 47777888888777666777777888888888888777666677777788888888888777666666777777888888
Q ss_pred ccccccccCChhhcCCCCCcEEEccCCc-CCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCC
Q 014726 183 DSSGVTGSIPQEFANLKSLRILWASDNL-FTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261 (419)
Q Consensus 183 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 261 (419)
++|++....+..|..+++|+.|++++|. +....+..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 8777776555667777777777777743 333333456777777777777777764 23 45666677777777776666
Q ss_pred CCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCc
Q 014726 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 262 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
..+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66666666677777777777776666666666777777777777776555555666667777777776654
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=4.5e-30 Score=236.99 Aligned_cols=256 Identities=23% Similarity=0.240 Sum_probs=168.4
Q ss_pred EEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecccc
Q 014726 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (419)
Q Consensus 82 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (419)
+.++.++.++. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45566666554 345433 357888888888887666667788888888888888887666777888888888888888
Q ss_pred c-cCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccch
Q 014726 162 N-FFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (419)
Q Consensus 162 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (419)
. +....|..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665556677777777777777777776666667777777777777777665555556666666666666665553333
Q ss_pred hhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCC
Q 014726 241 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 320 (419)
Q Consensus 241 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 320 (419)
. .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++
T Consensus 171 ~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 171 R------------------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp T------------------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred H------------------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 2 3444555666666666666666666777777777777777777554455667777
Q ss_pred CcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCccccc
Q 014726 321 LQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK 364 (419)
Q Consensus 321 L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 364 (419)
|++|++++|++....+.......++.+..+.+.+....|+.+..
T Consensus 227 L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp CCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCC
Confidence 77777777777644332212233444556666666666655433
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.6e-29 Score=243.92 Aligned_cols=272 Identities=19% Similarity=0.169 Sum_probs=160.7
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+. | .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 3566777777766643 3 46667777777777777664 23 66667777777777776643 2 666677777777
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
++|++++. + ++.+++|++|++++|++++. + +..+++|++|++++|+..+.+ .+..+++|++|++++|.+++
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 77766643 3 56666677777777666642 2 555666666666666443333 24455566666666665554
Q ss_pred chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCcc----
Q 014726 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTS---- 314 (419)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---- 314 (419)
+| +..+++|+.|++++|.+... .+..+++|++|++++|++++ +| ++.+++|+.|++++|++++..+..
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 22 45555555555555555443 24455555555555555553 33 445555555555555555432222
Q ss_pred -------------------------ccCCCCCcEEEccCCcCcccCCCCC---------CCCCccEEEcccCCCcccCCc
Q 014726 315 -------------------------LQDLSTLQYLYLGNNNLSGELPVNI---------IAPNLIALDVSYNPLSGNLPR 360 (419)
Q Consensus 315 -------------------------~~~l~~L~~L~L~~N~l~~~~p~~~---------~~~~L~~L~Ls~N~l~~~~p~ 360 (419)
++.+++|+.|++++|...+.+|... .+++|++|++++|++++ +|
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~- 334 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD- 334 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-
T ss_pred CEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc-
Confidence 2344666677777776665555321 24688888888888887 33
Q ss_pred cccc-CCce-eEeecCCccc
Q 014726 361 NFAK-GGLS-MNVIGSSINA 378 (419)
Q Consensus 361 ~~~~-~~l~-~~~~~n~~~~ 378 (419)
+.. +.++ +++.+|.+.+
T Consensus 335 -l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp -CTTCTTCSEEECCSSCCCB
T ss_pred -cccCCcCcEEECCCCCCCC
Confidence 555 6665 5666666653
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.8e-29 Score=244.63 Aligned_cols=243 Identities=23% Similarity=0.211 Sum_probs=212.4
Q ss_pred ECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccccccc
Q 014726 109 NLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVT 188 (419)
Q Consensus 109 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 188 (419)
+.++..++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++
T Consensus 60 ~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 60 VCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp ECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 34444444 4555443 58999999999999888899999999999999999999888899999999999999999999
Q ss_pred ccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCC-cCcccchhhcccCCCCCeEEcCCCCCCCCCchhh
Q 014726 189 GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT-LLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFL 267 (419)
Q Consensus 189 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 267 (419)
+..+..+..+++|++|++++|.+....+..+..+++|++|++++| .+....+..|..+++|+.|++++|.+... ..+
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~ 214 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNL 214 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCC
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccc
Confidence 777778999999999999999999777778999999999999995 44444445789999999999999998765 357
Q ss_pred cCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccE
Q 014726 268 ESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIA 346 (419)
Q Consensus 268 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~ 346 (419)
..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+ .+++|+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 889999999999999998889999999999999999999998889999999999999999999995444444 4799999
Q ss_pred EEcccCCCcc
Q 014726 347 LDVSYNPLSG 356 (419)
Q Consensus 347 L~Ls~N~l~~ 356 (419)
|+|++|++.-
T Consensus 295 L~L~~Np~~C 304 (452)
T 3zyi_A 295 LHLHHNPWNC 304 (452)
T ss_dssp EECCSSCEEC
T ss_pred EEccCCCcCC
Confidence 9999999753
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.2e-30 Score=237.18 Aligned_cols=207 Identities=21% Similarity=0.209 Sum_probs=180.7
Q ss_pred cceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCc-CCCCCCCCcccCCcccee
Q 014726 78 SCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN-FTGRVPTELGNLTKLISL 156 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L 156 (419)
..+++.|+++++.+.+..+..+..+++|++|++++|.+++..|..|.++++|++|++++|. +....|..|..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4579999999999988777889999999999999999998778899999999999999997 876668899999999999
Q ss_pred eccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999888888999999999999999999777777999999999999999999777778999999999999999999
Q ss_pred ccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCc
Q 014726 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS 284 (419)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 284 (419)
+..|..+..+++|+.|++++|.+.......+..+++|++|++++|.+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 877888887777777777777666655555666666666666666665
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=242.62 Aligned_cols=244 Identities=20% Similarity=0.187 Sum_probs=215.1
Q ss_pred EEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccccc
Q 014726 107 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG 186 (419)
Q Consensus 107 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 186 (419)
.++.++..++ .+|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4555666666 6777654 689999999999998888899999999999999999998888899999999999999999
Q ss_pred ccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCc-CcccchhhcccCCCCCeEEcCCCCCCCCCch
Q 014726 187 VTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTL-LEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 265 (419)
Q Consensus 187 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 265 (419)
++...+..|..+++|++|++++|.+....+..+..+++|++|++++|. +....+..|.++++|++|++++|.+....
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence 997767789999999999999999997777889999999999999954 44444557899999999999999887653
Q ss_pred hhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCc
Q 014726 266 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNL 344 (419)
Q Consensus 266 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L 344 (419)
.+..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+ .+++|
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 47889999999999999998889999999999999999999999889999999999999999999995544444 47999
Q ss_pred cEEEcccCCCc
Q 014726 345 IALDVSYNPLS 355 (419)
Q Consensus 345 ~~L~Ls~N~l~ 355 (419)
+.|+|++|++.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 99999999975
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=5.3e-31 Score=246.45 Aligned_cols=245 Identities=20% Similarity=0.215 Sum_probs=150.9
Q ss_pred CCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCC-CCCCCCcc-------cCCccceeeccccccCCCCChhc--c
Q 014726 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT-GRVPTELG-------NLTKLISLSFSSNNFFGPLPKEL--G 172 (419)
Q Consensus 103 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~~l--~ 172 (419)
++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|++++..|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3455555555555 444443332 555555555552 23333332 45555556665555555555543 5
Q ss_pred CCCCccceecccccccccCChhhcCC-----CCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc--chhhc--
Q 014726 173 KLTSLQQLYIDSSGVTGSIPQEFANL-----KSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP--IPRSF-- 243 (419)
Q Consensus 173 ~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~-- 243 (419)
.+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 555566666666655544 4444444 5666666666666655556666666666666666665543 23333
Q ss_pred ccCCCCCeEEcCCCCCCCC---CchhhcCCCCCCEEeccCCcCcccCC-ccccCCCCCCEEEeecCcccccCCccccCCC
Q 014726 244 RALNKLEDLRIGDLSAEDS---TLDFLESQKSLSILSLRNCRVSGKIP-DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319 (419)
Q Consensus 244 ~~l~~L~~L~L~~n~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 319 (419)
..+++|++|++++|.+... ....+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 5666677777766666532 22334566788888888888876654 34566788888888888887 6777665 7
Q ss_pred CCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcc
Q 014726 320 TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 356 (419)
Q Consensus 320 ~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~ 356 (419)
+|++|++++|++++. |....+++|++|++++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 888888888888854 653357888888888888875
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.1e-30 Score=244.26 Aligned_cols=245 Identities=22% Similarity=0.222 Sum_probs=210.4
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCC-ccCCcccc-------CCCCCcEeecccCcCCCCCCCCc--c
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLN-GSIPAEIG-------QLSNMQYLSLGINNFTGRVPTEL--G 148 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~~--~ 148 (419)
.+++.++++++.+ .+|..+... |+.|++++|.++ ..+|..+. ++++|++|++++|.+++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3567777888888 788877664 899999999984 45776665 79999999999999998899876 8
Q ss_pred cCCccceeeccccccCCCCChhccCC-----CCccceecccccccccCChhhcCCCCCcEEEccCCcCCCC--Cchhh--
Q 014726 149 NLTKLISLSFSSNNFFGPLPKELGKL-----TSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK--IPEFF-- 219 (419)
Q Consensus 149 ~l~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l-- 219 (419)
.+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 999999999999999977 8778777 9999999999999988889999999999999999998765 23344
Q ss_pred cCccccceeeccCCcCcc--cch-hhcccCCCCCeEEcCCCCCCCCC-chhhcCCCCCCEEeccCCcCcccCCccccCCC
Q 014726 220 GTLTELADLRLQGTLLEG--PIP-RSFRALNKLEDLRIGDLSAEDST-LDFLESQKSLSILSLRNCRVSGKIPDQLGTFA 295 (419)
Q Consensus 220 ~~l~~L~~L~l~~n~l~~--~~~-~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 295 (419)
..+++|++|++++|.+++ .++ ..+.++++|++|++++|.+.... ...+..+++|++|++++|.++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 889999999999999983 222 44568899999999999998765 456677899999999999999 7887776 8
Q ss_pred CCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcc
Q 014726 296 KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 333 (419)
Q Consensus 296 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 333 (419)
+|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999999999999965 66 8899999999999999985
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.3e-30 Score=242.93 Aligned_cols=257 Identities=19% Similarity=0.201 Sum_probs=221.8
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 47999999999998776778999999999999999999877888999999999999999999655555899999999999
Q ss_pred cccccCCCCC-hhccCCCCccceecccc-cccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 159 SSNNFFGPLP-KELGKLTSLQQLYIDSS-GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 159 s~n~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
++|++++..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999985544 47889999999999999 477666788999999999999999999888999999999999999999997
Q ss_pred ccchhhcccCCCCCeEEcCCCCCCCCCchh---hcCCCCCCEEeccCCcCcc----cCCccccCCCCCCEEEeecCcccc
Q 014726 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDF---LESQKSLSILSLRNCRVSG----KIPDQLGTFAKLQLLDLSFNKLTG 309 (419)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~ 309 (419)
......+..+++|+.|++++|.+....... ......++.++++++.+++ .+|..+..+++|++|++++|+++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 544445567899999999999988764332 3456788999999998876 46778899999999999999999
Q ss_pred cCCcc-ccCCCCCcEEEccCCcCcccCC
Q 014726 310 QIPTS-LQDLSTLQYLYLGNNNLSGELP 336 (419)
Q Consensus 310 ~~p~~-~~~l~~L~~L~L~~N~l~~~~p 336 (419)
.+|.. +..+++|++|++++|++.+..|
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 56665 5899999999999999987654
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3.5e-28 Score=238.75 Aligned_cols=256 Identities=19% Similarity=0.141 Sum_probs=154.2
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+. | +..+++|++|++++|.+++. + ++++++|++|++++|.+++ +| ++.+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 4677777777776653 3 66777777777777777643 2 6677777777777777764 33 666777777777
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCc-------------------hhh
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-------------------EFF 219 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------~~l 219 (419)
++|++++. + ++.+++|++|++++|...+.+ .+..+++|+.|++++|++++. + ..+
T Consensus 135 ~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~l~~l~~L~~L~l~~N~l~~~~l 208 (457)
T 3bz5_A 135 ARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKLDL 208 (457)
T ss_dssp TTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-CCTTCTTCCEEECCSSCCSCCCC
T ss_pred CCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-ccccCCCCCEEECcCCcCCeecc
Confidence 77776653 2 445555555555555333333 244445555555555555432 2 014
Q ss_pred cCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCC-------CCCEEeccCCcCcccCCcccc
Q 014726 220 GTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQK-------SLSILSLRNCRVSGKIPDQLG 292 (419)
Q Consensus 220 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-------~L~~L~Ls~n~l~~~~p~~~~ 292 (419)
..+++|++|++++|++++ +| +..+++|+.|++++|.+.......+..+. +|+.|++++|.+.+.+| ++
T Consensus 209 ~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~ 283 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AE 283 (457)
T ss_dssp TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CT
T ss_pred ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--cc
Confidence 444555555555555544 33 44555555555555555443322222222 23334444444333333 34
Q ss_pred CCCCCCEEEeecCcccccCCc--------cccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcc
Q 014726 293 TFAKLQLLDLSFNKLTGQIPT--------SLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 356 (419)
Q Consensus 293 ~l~~L~~L~L~~n~l~~~~p~--------~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~ 356 (419)
.+++|+.|++++|...+.+|. .+..+++|++|++++|++++ ++ ...+++|+.|++++|++++
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~-l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD-VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-CTTCTTCSEEECCSSCCCB
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc-cccCCcCcEEECCCCCCCC
Confidence 567888888888876655543 25567899999999999997 44 3458999999999999997
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=2.5e-30 Score=242.43 Aligned_cols=266 Identities=17% Similarity=0.117 Sum_probs=172.5
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecc
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 159 (419)
+++..+++.+.+...+...+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555566666654444555667789999999999887666788889999999999998875544 8888889999998
Q ss_pred ccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccc
Q 014726 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (419)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 239 (419)
+|.+++. ...++|++|++++|.+++..+. .+++|+.|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 8887632 2347888888888888755443 3577888888888888766667777888888888888877665
Q ss_pred hhhc-ccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCC
Q 014726 240 PRSF-RALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (419)
Q Consensus 240 ~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 318 (419)
+..+ ..+++|++|++++|.+... .....+++|++|++++|.+++ +|..+..+++|+.|++++|+++ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 5555 3566666666666665443 112235556666666665553 3333555555666666666555 345455555
Q ss_pred CCCcEEEccCCcCc-ccCCCCC-CCCCccEEEcccCC-CcccCC
Q 014726 319 STLQYLYLGNNNLS-GELPVNI-IAPNLIALDVSYNP-LSGNLP 359 (419)
Q Consensus 319 ~~L~~L~L~~N~l~-~~~p~~~-~~~~L~~L~Ls~N~-l~~~~p 359 (419)
++|+.|++++|++. +.+|..+ .+++|+.+++++|+ ++|..|
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 55555555555555 3333222 24455555555322 444433
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=6.6e-27 Score=229.51 Aligned_cols=259 Identities=25% Similarity=0.371 Sum_probs=129.6
Q ss_pred CCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceec
Q 014726 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 182 (419)
Q Consensus 103 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 182 (419)
++|++|++++|.+++ +| .++++++|++|++++|.+++ +|..+ ++|++|++++|++++ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355555555555553 44 35555555555555555552 33322 355555555555553 33 3555555555555
Q ss_pred ccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCC
Q 014726 183 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS 262 (419)
Q Consensus 183 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 262 (419)
++|++++ +|.. .++|++|++++|.+. .+| .+..+++|++|++++|.+++ +|.. .++|+.|++++|.+...
T Consensus 203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 203 DNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC
T ss_pred CCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc
Confidence 5555553 2321 135555555555555 333 25555555666665555553 2221 24555555555544432
Q ss_pred CchhhcCCCCCCEEeccCCcCcc--cCCcc-------------ccCC-CCCCEEEeecCcccccCCccccCCCCCcEEEc
Q 014726 263 TLDFLESQKSLSILSLRNCRVSG--KIPDQ-------------LGTF-AKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYL 326 (419)
Q Consensus 263 ~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~-------------~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 326 (419)
.. .+++|++|++++|.+++ .+|.. +..+ ++|++|++++|++++ +|.. +++|++|++
T Consensus 273 ~~----~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 273 PE----LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIA 344 (454)
T ss_dssp CC----CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred Cc----ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEEC
Confidence 11 12445555555554443 11111 1122 478888888888874 5543 478899999
Q ss_pred cCCcCcccCCCCCCCCCccEEEcccCCCcc--cCCccccc--------------CCce-eEeecCCcccCCCcccccchh
Q 014726 327 GNNNLSGELPVNIIAPNLIALDVSYNPLSG--NLPRNFAK--------------GGLS-MNVIGSSINANNLQDGKALGM 389 (419)
Q Consensus 327 ~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~--------------~~l~-~~~~~n~~~~~~~~~~~p~~~ 389 (419)
++|+++ .+|. .+++|++|++++|++++ .+|..+.. ..++ +++.+|++.+- +.+|.++
T Consensus 345 ~~N~l~-~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~---~~iP~sl 418 (454)
T 1jl5_A 345 SFNHLA-EVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF---PDIPESV 418 (454)
T ss_dssp CSSCCS-CCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred CCCccc-cccc--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc---ccchhhH
Confidence 999888 5775 57889999999999998 77776543 2344 56677776641 3678777
Q ss_pred hhcc
Q 014726 390 MQCL 393 (419)
Q Consensus 390 ~~~~ 393 (419)
....
T Consensus 419 ~~L~ 422 (454)
T 1jl5_A 419 EDLR 422 (454)
T ss_dssp ----
T ss_pred hhee
Confidence 6644
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.1e-27 Score=233.02 Aligned_cols=248 Identities=21% Similarity=0.248 Sum_probs=139.4
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCC-------------cEeecccCcCCC-----
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNM-------------QYLSLGINNFTG----- 141 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~l~~----- 141 (419)
+++.|+++++.+ |.+|++++++++|++|++++|.+.|.+|..++++.+| ++|++++|.+++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~ 90 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP 90 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCc
Confidence 455566666665 5666666666666666666666655555555554432 445555554442
Q ss_pred --------------CCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEcc
Q 014726 142 --------------RVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 207 (419)
Q Consensus 142 --------------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 207 (419)
.+|.. +++|++|++++|++++. +.. .++|++|++++|++++ +| .+..+++|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 13322 24555555555555431 111 1467777777777764 55 46777777777777
Q ss_pred CCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccC
Q 014726 208 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287 (419)
Q Consensus 208 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 287 (419)
+|++++ +|.. .++|++|++++|.+++ +| .+.++++|++|++++|.+..... ..++|++|++++|.++ .+
T Consensus 162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 162 NNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILE-EL 230 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCS-SC
T ss_pred CCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCC-cc
Confidence 777764 3332 2467777777777765 44 46777777777777776654321 1247777777777777 56
Q ss_pred CccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcc
Q 014726 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 356 (419)
Q Consensus 288 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~ 356 (419)
|. ++.+++|++|++++|++++ +|.. .++|++|++++|++.+ +|.. .++|++|++++|.+++
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSE
T ss_pred cc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCc
Confidence 63 6777788888888887773 4432 3677888888887774 5532 3678888888888776
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2e-28 Score=229.53 Aligned_cols=258 Identities=21% Similarity=0.193 Sum_probs=212.5
Q ss_pred CCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecc
Q 014726 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 183 (419)
Q Consensus 104 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 183 (419)
.++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34556777777764445556778899999999999998777899999999999999999986554 8899999999999
Q ss_pred cccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCC
Q 014726 184 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDST 263 (419)
Q Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 263 (419)
+|.+++. + ..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+....
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9999843 2 348999999999999876544 3678999999999999888889999999999999999988775
Q ss_pred chhh-cCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CC
Q 014726 264 LDFL-ESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IA 341 (419)
Q Consensus 264 ~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~ 341 (419)
+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+ .+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 5555 5789999999999999855 33 3458999999999999994 5566889999999999999999 566655 57
Q ss_pred CCccEEEcccCCCc-ccCCccccc-CCce-eEeecCC
Q 014726 342 PNLIALDVSYNPLS-GNLPRNFAK-GGLS-MNVIGSS 375 (419)
Q Consensus 342 ~~L~~L~Ls~N~l~-~~~p~~~~~-~~l~-~~~~~n~ 375 (419)
++|+.|++++|+++ +.+|..+.. +.++ +.+.+++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 99999999999998 667766655 5555 3444333
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-25 Score=227.52 Aligned_cols=268 Identities=25% Similarity=0.314 Sum_probs=215.4
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecc
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 159 (419)
.++.|+++++.+. .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5889999999987 7777665 79999999999998 5665 5789999999999998 5665 67899999999
Q ss_pred ccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccc
Q 014726 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 239 (419)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 239 (419)
+|.+++. |. .+++|+.|++++|+++. +|.. +++|++|++++|.+++. |. .+++|+.|++++|.+++ +
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-C
Confidence 9999854 44 56899999999999985 5653 48999999999999853 33 35789999999999985 5
Q ss_pred hhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCC
Q 014726 240 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319 (419)
Q Consensus 240 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 319 (419)
| ..+++|+.|++++|.+..... .+++|+.|++++|.++ .+|. .+++|+.|++++|++++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 5 457899999999998876432 3578999999999998 5554 34789999999999984 66 4568
Q ss_pred CCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCccccc-CCce-eEeecCCcccCCCcccccchhhhcccc
Q 014726 320 TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINANNLQDGKALGMMQCLHS 395 (419)
Q Consensus 320 ~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~~~~~~~~~~~p~~~~~~~~~ 395 (419)
+|++|++++|+++ .+|. .+++|+.|+|++|.++ .+|..+.. +.++ +++.+|++.+ .+|..+......
T Consensus 242 ~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~-----~~~~~l~~L~~~ 310 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE-----RTLQALREITSA 310 (622)
T ss_dssp TCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH-----HHHHHHHHHHHS
T ss_pred cCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC-----cCHHHHHhcccc
Confidence 9999999999998 5775 6789999999999999 78888887 7776 6777777663 566666655433
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.6e-28 Score=239.95 Aligned_cols=224 Identities=19% Similarity=0.170 Sum_probs=154.3
Q ss_pred CChhhhCCC----CCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChh
Q 014726 95 LPSELFMLR----KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKE 170 (419)
Q Consensus 95 ~p~~l~~l~----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 170 (419)
+|..+..+. +|++|+|++|.+++..|..|..+++|++|+|++|.+++..| |..+++|++|++++|.+++..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---
Confidence 455554443 78999999998887777788889999999999998886554 888888888998888876432
Q ss_pred ccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcc-cCCCC
Q 014726 171 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFR-ALNKL 249 (419)
Q Consensus 171 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L 249 (419)
..++|++|++++|.+++..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 337888888888888865443 357788888888888877777777888888888888888876676664 56677
Q ss_pred CeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCC
Q 014726 250 EDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329 (419)
Q Consensus 250 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 329 (419)
+.|++++|.+... .....+++|++|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 172 ~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 172 EHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred cEEecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence 7776666665543 122235556666666666553 3333555556666666666555 24445555555555555555
Q ss_pred cCc
Q 014726 330 NLS 332 (419)
Q Consensus 330 ~l~ 332 (419)
.+.
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 555
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.6e-26 Score=210.04 Aligned_cols=217 Identities=21% Similarity=0.268 Sum_probs=143.3
Q ss_pred CCCCCCCCCCCCCCCCCCeeecCCCCcceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcE
Q 014726 52 IDPCTRNASWASENANPRVACDCTSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQY 131 (419)
Q Consensus 52 ~d~c~~~~~w~~~~~~~~~~c~~~~~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 131 (419)
.|.|. | .++.|.|.+ +.+.++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++
T Consensus 2 ~~~C~----~------~~~~C~c~~---~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 65 (270)
T 2o6q_A 2 EALCK----K------DGGVCSCNN---NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRL 65 (270)
T ss_dssp CCCBG----G------GTCSBEEET---TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCE
T ss_pred CccCC----C------CCCCCEeCC---CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCE
Confidence 46787 8 678888754 3567778777776 3554443 46788888888877555556777888888
Q ss_pred eecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcC
Q 014726 132 LSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLF 211 (419)
Q Consensus 132 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 211 (419)
|++++|.++...+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 88888877755555567777777888777777766666667777777777777777766556666677777777777766
Q ss_pred CCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccc
Q 014726 212 TGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQL 291 (419)
Q Consensus 212 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 291 (419)
++..+..+..+++|++|++++|.+++..+..|. .+++|++|++++|.+++..+..+
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------------~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD------------------------KLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT------------------------TCTTCCEEECCSSCCSCCCTTTT
T ss_pred CccCHhHccCCcccceeEecCCcCcEeChhHhc------------------------cCCCcCEEECCCCcCCcCCHHHh
Confidence 655555566666666666666666544443444 44555555555555554444445
Q ss_pred cCCCCCCEEEeecCccc
Q 014726 292 GTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 292 ~~l~~L~~L~L~~n~l~ 308 (419)
..+++|+.|++++|.+.
T Consensus 202 ~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred ccccCCCEEEecCCCee
Confidence 56666666666666654
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=4.2e-26 Score=209.31 Aligned_cols=209 Identities=22% Similarity=0.246 Sum_probs=122.8
Q ss_pred CCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceec
Q 014726 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 182 (419)
Q Consensus 103 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 182 (419)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 36778888888777655556777778888888887777655667777777777777777777666666777777777777
Q ss_pred ccccccccCChhhcCCCCCcEEEccCCcCCCC-CchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCC
Q 014726 183 DSSGVTGSIPQEFANLKSLRILWASDNLFTGK-IPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261 (419)
Q Consensus 183 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 261 (419)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+.+.+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l------- 180 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------- 180 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE-------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce-------
Confidence 77776655554566666666666666666542 3555555566666666665555443333333322221110
Q ss_pred CCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCc
Q 014726 262 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 262 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
+|++++|.+++..+..+ ...+|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 181 -------------~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 181 -------------SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp -------------EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred -------------eeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 45555555553333222 2234555555555555333333444444444444444444
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=3e-26 Score=210.35 Aligned_cols=206 Identities=18% Similarity=0.159 Sum_probs=169.2
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|+++++.+.+..+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 36999999999998877778999999999999999999777778999999999999999999887889999999999999
Q ss_pred cccccCCCCChhccCCCCccceeccccccccc-CChhhcCCCCCcEEEccCCcCCCCCchhhcCccccc----eeeccCC
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGS-IPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA----DLRLQGT 233 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n 233 (419)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999987777899999999999999999863 689999999999999999999987777777777777 7888888
Q ss_pred cCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccc
Q 014726 234 LLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTG 309 (419)
Q Consensus 234 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 309 (419)
.+++..+..+. . .+|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 188 ~l~~~~~~~~~-~------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFK-E------------------------IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSC-S------------------------CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccC-C------------------------CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 87754333322 1 245556666666664444445666667777777666653
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=4.3e-29 Score=246.13 Aligned_cols=298 Identities=16% Similarity=0.143 Sum_probs=147.5
Q ss_pred eeEEEEeecCcccccCChhhh-CCC----CCCEEECcCCcCCc----cCCccccCCCCCcEeecccCcCCCCCCCCcc--
Q 014726 80 HITHLKIYALDIMGELPSELF-MLR----KLMDLNLGQNVLNG----SIPAEIGQLSNMQYLSLGINNFTGRVPTELG-- 148 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~-~l~----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-- 148 (419)
++++|+++++.+.+..+..+. .++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.
T Consensus 57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 136 (461)
T 1z7x_W 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH
Confidence 455555555554433332222 233 45555555555542 2344455555555555555555422222111
Q ss_pred ---cCCccceeeccccccCCCC----ChhccCCCCccceecccccccccCChhhc-----CCCCCcEEEccCCcCCCC--
Q 014726 149 ---NLTKLISLSFSSNNFFGPL----PKELGKLTSLQQLYIDSSGVTGSIPQEFA-----NLKSLRILWASDNLFTGK-- 214 (419)
Q Consensus 149 ---~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~-- 214 (419)
..++|++|++++|++++.. +..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++.
T Consensus 137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 1334555555555554322 23344445555555555555433222221 234566666666655542
Q ss_pred --CchhhcCccccceeeccCCcCcccc-----hhhcccCCCCCeEEcCCCCCCCC----CchhhcCCCCCCEEeccCCcC
Q 014726 215 --IPEFFGTLTELADLRLQGTLLEGPI-----PRSFRALNKLEDLRIGDLSAEDS----TLDFLESQKSLSILSLRNCRV 283 (419)
Q Consensus 215 --~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l 283 (419)
++..+..+++|++|++++|.++... +..+..+++|++|++++|.+... ....+..+++|++|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 3444455556666666666554321 11222455666666666655443 123344456666666666665
Q ss_pred cccCCcccc-----CCCCCCEEEeecCccccc----CCccccCCCCCcEEEccCCcCcccCCCCCC------CCCccEEE
Q 014726 284 SGKIPDQLG-----TFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNLSGELPVNII------APNLIALD 348 (419)
Q Consensus 284 ~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~------~~~L~~L~ 348 (419)
++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. .++|++|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 543222221 124666666666666543 334445556666666666666543322111 35666777
Q ss_pred cccCCCcc----cCCccccc-CCce-eEeecCCcc
Q 014726 349 VSYNPLSG----NLPRNFAK-GGLS-MNVIGSSIN 377 (419)
Q Consensus 349 Ls~N~l~~----~~p~~~~~-~~l~-~~~~~n~~~ 377 (419)
+++|.+++ .+|..+.. +.++ +++.+|++.
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 77776664 55555554 5554 555555544
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8.7e-27 Score=230.79 Aligned_cols=230 Identities=23% Similarity=0.223 Sum_probs=195.7
Q ss_pred CCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEE
Q 014726 125 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204 (419)
Q Consensus 125 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 204 (419)
.+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++.. ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34489999999999998888899999999999999999987655 889999999999999998533 23899999
Q ss_pred EccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhc-CCCCCCEEeccCCcC
Q 014726 205 WASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLE-SQKSLSILSLRNCRV 283 (419)
Q Consensus 205 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l 283 (419)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+....+..+. .+++|++|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999976654 467899999999999998898999999999999999999887666664 789999999999999
Q ss_pred cccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCc-ccCCcc
Q 014726 284 SGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLS-GNLPRN 361 (419)
Q Consensus 284 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~-~~~p~~ 361 (419)
++..+ ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+ .+++|+.|++++|++. +.+|..
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 96533 3468999999999999995 55568899999999999999995 66555 4789999999999998 666655
Q ss_pred ccc-CCce
Q 014726 362 FAK-GGLS 368 (419)
Q Consensus 362 ~~~-~~l~ 368 (419)
+.. +.+.
T Consensus 258 ~~~l~~L~ 265 (487)
T 3oja_A 258 FSKNQRVQ 265 (487)
T ss_dssp HTTCHHHH
T ss_pred HHhCCCCc
Confidence 544 4443
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=9.8e-29 Score=243.54 Aligned_cols=278 Identities=23% Similarity=0.246 Sum_probs=222.6
Q ss_pred eeEEEEeecCcccc----cCChhhhCCCCCCEEECcCCcCCccCCccc-----cCCCCCcEeecccCcCCCCC----CCC
Q 014726 80 HITHLKIYALDIMG----ELPSELFMLRKLMDLNLGQNVLNGSIPAEI-----GQLSNMQYLSLGINNFTGRV----PTE 146 (419)
Q Consensus 80 ~v~~L~l~~~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~----p~~ 146 (419)
++++|+++++.+.. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 69999999999874 568889999999999999999876544433 23568999999999998643 556
Q ss_pred cccCCccceeeccccccCCCCChhcc-----CCCCccceeccccccccc----CChhhcCCCCCcEEEccCCcCCCCC--
Q 014726 147 LGNLTKLISLSFSSNNFFGPLPKELG-----KLTSLQQLYIDSSGVTGS----IPQEFANLKSLRILWASDNLFTGKI-- 215 (419)
Q Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-- 215 (419)
+..+++|++|++++|.+....+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 67789999999999998754444443 356999999999999863 5777888999999999999987542
Q ss_pred ---chhhcCccccceeeccCCcCccc----chhhcccCCCCCeEEcCCCCCCCCCchhhc-----CCCCCCEEeccCCcC
Q 014726 216 ---PEFFGTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTLDFLE-----SQKSLSILSLRNCRV 283 (419)
Q Consensus 216 ---~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~~~L~~L~Ls~n~l 283 (419)
+..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.......+. ..++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 22334689999999999999854 677888899999999999987654333332 337999999999999
Q ss_pred ccc----CCccccCCCCCCEEEeecCcccccCCccccC-----CCCCcEEEccCCcCcc----cCCCCC-CCCCccEEEc
Q 014726 284 SGK----IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD-----LSTLQYLYLGNNNLSG----ELPVNI-IAPNLIALDV 349 (419)
Q Consensus 284 ~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~----~~p~~~-~~~~L~~L~L 349 (419)
++. ++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+ .+++|++|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 865 4666778899999999999998765544432 6799999999999986 555444 4799999999
Q ss_pred ccCCCccc
Q 014726 350 SYNPLSGN 357 (419)
Q Consensus 350 s~N~l~~~ 357 (419)
++|++++.
T Consensus 406 ~~N~i~~~ 413 (461)
T 1z7x_W 406 SNNCLGDA 413 (461)
T ss_dssp CSSSCCHH
T ss_pred CCCCCCHH
Confidence 99999865
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-24 Score=198.82 Aligned_cols=204 Identities=21% Similarity=0.256 Sum_probs=138.9
Q ss_pred CCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecc
Q 014726 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 183 (419)
Q Consensus 104 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 183 (419)
..+.++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4566777777776 4555443 467777777777765555566777777777777776665444445566666666666
Q ss_pred cccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCC
Q 014726 184 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDST 263 (419)
Q Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 263 (419)
+|.+.+..+..+..+++|++|++++|++++..+..+.. +++|++|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------LTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------------CTTCCEEECCSSCCCCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------------CcCCCEEECCCCcCCccC
Confidence 66666444444555555555555555555444444444 445555555555444444
Q ss_pred chhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCccc
Q 014726 264 LDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE 334 (419)
Q Consensus 264 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 334 (419)
...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 44566778888888888888876677789999999999999999976666788899999999999998754
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=3.6e-25 Score=202.70 Aligned_cols=184 Identities=20% Similarity=0.197 Sum_probs=97.5
Q ss_pred cccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccc
Q 014726 147 LGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA 226 (419)
Q Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 226 (419)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 33344444444444444321 1334444444444444444433333344444444444444444444334444444444
Q ss_pred eeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCc
Q 014726 227 DLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK 306 (419)
Q Consensus 227 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 306 (419)
+|++++|.+++..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 44444444444444444455555555555555544444445566666677777777776666566777777777777776
Q ss_pred ccccCCccccCCCCCcEEEccCCcCcccCCCCC
Q 014726 307 LTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 339 (419)
Q Consensus 307 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 339 (419)
+.+. +++|+.|+++.|.++|.+|..+
T Consensus 217 ~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 217 WDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp BCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred cccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 6532 3467777777777777777554
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=3e-25 Score=203.20 Aligned_cols=225 Identities=18% Similarity=0.217 Sum_probs=185.8
Q ss_pred CCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEcc
Q 014726 128 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 207 (419)
Q Consensus 128 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 207 (419)
++..+++..+.+... .....+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+ + ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECC
Confidence 455566666666533 235677889999999888763 2 357889999999999999985 3 478899999999999
Q ss_pred CCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccC
Q 014726 208 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 287 (419)
Q Consensus 208 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 287 (419)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 99999887788889999999999999999877777889999999999999888777777888899999999999998777
Q ss_pred CccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCccccc
Q 014726 288 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK 364 (419)
Q Consensus 288 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 364 (419)
+..++.+++|++|++++|++++..+..+..+++|++|++++|.+.+.. ++|+.++++.|.++|.+|..+..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~------~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC------PGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT------TTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC------cHHHHHHHHHHhCCCcccCcccc
Confidence 777788899999999999998777777888899999999999887654 36888888999999888876544
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3e-24 Score=217.26 Aligned_cols=245 Identities=25% Similarity=0.308 Sum_probs=205.5
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 47999999999987 5665 5789999999999998 5665 67999999999999984 555 5689999999
Q ss_pred cccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS- 195 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-
Confidence 9999985 4543 4899999999999985 454 35789999999999995 44 457899999999999985
Q ss_pred chhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCC
Q 014726 239 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 318 (419)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 318 (419)
+|.. .++|+.|++++|.+..... .+++|++|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+
T Consensus 196 l~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~ 260 (622)
T 3g06_A 196 LPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LP 260 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CC
T ss_pred CCCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---cc
Confidence 4433 4799999999998876442 35899999999999995 66 45689999999999998 5665 56
Q ss_pred CCCcEEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc
Q 014726 319 STLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK 364 (419)
Q Consensus 319 ~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~ 364 (419)
++|+.|++++|+++ .+|..+ .+++|+.|+|++|++++.+|..+..
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 89999999999999 778665 4899999999999999998876654
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.9e-24 Score=198.32 Aligned_cols=201 Identities=21% Similarity=0.218 Sum_probs=88.3
Q ss_pred hCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccc
Q 014726 100 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (419)
Q Consensus 100 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (419)
.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+ ...
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~------ 75 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGT------ 75 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSC------
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCC------
Confidence 34445555555555554 3333332 345555555555544444444445555555555544442211 133
Q ss_pred eecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCC
Q 014726 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (419)
Q Consensus 180 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 259 (419)
+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+
T Consensus 76 ------------------l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 76 ------------------LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp ------------------CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred ------------------CCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 344444444444443 2333334444444444444444433333343344444444333333
Q ss_pred CCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcC
Q 014726 260 EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (419)
Q Consensus 260 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 331 (419)
.......+..+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+...++|+.|++++|.+
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 3333333334444444444444444333333444455555555555554 4444444444445555544444
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.1e-24 Score=199.35 Aligned_cols=201 Identities=20% Similarity=0.183 Sum_probs=152.7
Q ss_pred CcceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCcccee
Q 014726 77 NSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 156 (419)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 156 (419)
...+++.++++++++. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++. +.. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEE
Confidence 3457899999998886 5665553 6899999999999987788899999999999999999854 332 789999999
Q ss_pred eccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 157 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 157 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999997 56777788888888888888888666677888888888888888887666666677777777777777766
Q ss_pred ccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCccc
Q 014726 237 GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (419)
+..+..+. .+++|++|++++|+++ .+|..+...++|+.|++++|.+.
T Consensus 162 ~l~~~~~~------------------------~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLN------------------------GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTT------------------------TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhc------------------------CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 44333444 4455555555566665 45555556666777777776654
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=200.84 Aligned_cols=204 Identities=21% Similarity=0.193 Sum_probs=117.0
Q ss_pred CCCcEeecccCcCCCCCCCCc--ccCCccceeeccccccCCCCC----hhccCCCCccceecccccccccCChhhcCCCC
Q 014726 127 SNMQYLSLGINNFTGRVPTEL--GNLTKLISLSFSSNNFFGPLP----KELGKLTSLQQLYIDSSGVTGSIPQEFANLKS 200 (419)
Q Consensus 127 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 200 (419)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666655555555 555666666666665554333 22334455555555555555444444555555
Q ss_pred CcEEEccCCcCCCC--CchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCc---hhhcCCCCCCE
Q 014726 201 LRILWASDNLFTGK--IPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL---DFLESQKSLSI 275 (419)
Q Consensus 201 L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~ 275 (419)
|++|++++|++.+. ++. +..+..+++|++|++++|.+..... ..+..+++|++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMA----------------------ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp CCEEECCSCTTCHHHHHHT----------------------TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS
T ss_pred CCEEECCCCCCccchhhhH----------------------HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCE
Confidence 55555555544321 100 1112344455555555554432211 12355667777
Q ss_pred EeccCCcCcccCCccccCC---CCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCCCCCCccEEEcccC
Q 014726 276 LSLRNCRVSGKIPDQLGTF---AKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYN 352 (419)
Q Consensus 276 L~Ls~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N 352 (419)
|+|++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++ +|....+++|+.|++++|
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGN 304 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSST
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCC
Confidence 7777777776666666555 58888888888887 6666654 688888888888874 343335678888888888
Q ss_pred CCcc
Q 014726 353 PLSG 356 (419)
Q Consensus 353 ~l~~ 356 (419)
+++.
T Consensus 305 ~l~~ 308 (310)
T 4glp_A 305 PFLV 308 (310)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8763
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=8e-26 Score=215.74 Aligned_cols=251 Identities=14% Similarity=0.141 Sum_probs=154.3
Q ss_pred EEeecCcccccCChhhhCCCCCCEEECcCCcCCccCC----ccccCCC-CCcEeecccCcCCCCCCCCcccC-----Ccc
Q 014726 84 LKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIP----AEIGQLS-NMQYLSLGINNFTGRVPTELGNL-----TKL 153 (419)
Q Consensus 84 L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L 153 (419)
.+++.+++.|.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4567777777777766666668888888888876555 5677777 78888888888876666666654 788
Q ss_pred ceeeccccccCCCCChhcc----CC-CCccceecccccccccCChhh----cC-CCCCcEEEccCCcCCCCCc----hhh
Q 014726 154 ISLSFSSNNFFGPLPKELG----KL-TSLQQLYIDSSGVTGSIPQEF----AN-LKSLRILWASDNLFTGKIP----EFF 219 (419)
Q Consensus 154 ~~L~Ls~n~l~~~~p~~l~----~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~----~~l 219 (419)
++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 8888888887766655433 33 678888888888775554433 33 2577788887777775433 233
Q ss_pred cCcc-ccceeeccCCcCcccchhhcc----cC-CCCCeEEcCCCCCCCCCch----hhcC-CCCCCEEeccCCcCcccCC
Q 014726 220 GTLT-ELADLRLQGTLLEGPIPRSFR----AL-NKLEDLRIGDLSAEDSTLD----FLES-QKSLSILSLRNCRVSGKIP 288 (419)
Q Consensus 220 ~~l~-~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~~~~~~~~----~~~~-~~~L~~L~Ls~n~l~~~~p 288 (419)
...+ +|++|++++|.+++..+..+. .. ++|++|++++|.+...... .+.. .++|++|+|++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 777777777777655554333 33 4666666666665543222 2222 3466666666666654332
Q ss_pred ----ccccCCCCCCEEEeecCccccc-------CCccccCCCCCcEEEccCCcCccc
Q 014726 289 ----DQLGTFAKLQLLDLSFNKLTGQ-------IPTSLQDLSTLQYLYLGNNNLSGE 334 (419)
Q Consensus 289 ----~~~~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~L~~N~l~~~ 334 (419)
..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2234455666666666653321 122344455555555555555443
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=7.9e-26 Score=213.43 Aligned_cols=252 Identities=15% Similarity=0.153 Sum_probs=134.4
Q ss_pred eEEEEeecCcccccCChhhhCC--CCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCC-CCCCcccCCccceee
Q 014726 81 ITHLKIYALDIMGELPSELFML--RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGR-VPTELGNLTKLISLS 157 (419)
Q Consensus 81 v~~L~l~~~~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~ 157 (419)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 556666666554 3344444 5666666666666544333 33455666666666555432 444445555555555
Q ss_pred ccccccCCCCChhccCCCCccceecccc-cccc-cCChhhcCCCCCcEEEccCC-cCCCCCchhhcCccccceeeccCCc
Q 014726 158 FSSNNFFGPLPKELGKLTSLQQLYIDSS-GVTG-SIPQEFANLKSLRILWASDN-LFTGKIPEFFGTLTELADLRLQGTL 234 (419)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~ 234 (419)
+++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++.
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------------------- 184 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-------------------- 184 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--------------------
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--------------------
Confidence 5555544444444444555555555554 3332 13333444444444444444 44322
Q ss_pred CcccchhhcccCC-CCCeEEcCCCC--CCCC-CchhhcCCCCCCEEeccCCc-CcccCCccccCCCCCCEEEeecCc-cc
Q 014726 235 LEGPIPRSFRALN-KLEDLRIGDLS--AEDS-TLDFLESQKSLSILSLRNCR-VSGKIPDQLGTFAKLQLLDLSFNK-LT 308 (419)
Q Consensus 235 l~~~~~~~~~~l~-~L~~L~L~~n~--~~~~-~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~ 308 (419)
.++..+..++ +|++|++++|. +... .+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.
T Consensus 185 ---~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 185 ---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp ---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ---HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 1344444444 55555555542 2211 22334456666666666666 555556666777777777777774 33
Q ss_pred ccCCccccCCCCCcEEEccCCcCcccCCCCC--CC-CCccEEEcccCCCcccCCccccc
Q 014726 309 GQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IA-PNLIALDVSYNPLSGNLPRNFAK 364 (419)
Q Consensus 309 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~--~~-~~L~~L~Ls~N~l~~~~p~~~~~ 364 (419)
......+..+++|++|++++| ++ ... .+ ..+..|++++|++++..|..+..
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~----~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VP----DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SC----TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHHHhcCCCCCEEeccCc-cC----HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 222234666777888888777 32 221 11 34666677888888777765443
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=6.2e-26 Score=216.51 Aligned_cols=254 Identities=18% Similarity=0.181 Sum_probs=202.3
Q ss_pred EEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCC----CCcccCC-ccceeeccccccCCCCChhccCC-----CC
Q 014726 107 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVP----TELGNLT-KLISLSFSSNNFFGPLPKELGKL-----TS 176 (419)
Q Consensus 107 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~ 176 (419)
++++++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999998888888877789999999999986666 6778888 99999999999998877777665 99
Q ss_pred ccceecccccccccCChh----hcCC-CCCcEEEccCCcCCCCCchhh----cC-ccccceeeccCCcCccc----chhh
Q 014726 177 LQQLYIDSSGVTGSIPQE----FANL-KSLRILWASDNLFTGKIPEFF----GT-LTELADLRLQGTLLEGP----IPRS 242 (419)
Q Consensus 177 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~----~~~~ 242 (419)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999999766654 4445 899999999999987766554 33 36999999999999854 3445
Q ss_pred cccCC-CCCeEEcCCCCCCCCCch----hhcCC-CCCCEEeccCCcCccc----CCccccC-CCCCCEEEeecCcccccC
Q 014726 243 FRALN-KLEDLRIGDLSAEDSTLD----FLESQ-KSLSILSLRNCRVSGK----IPDQLGT-FAKLQLLDLSFNKLTGQI 311 (419)
Q Consensus 243 ~~~l~-~L~~L~L~~n~~~~~~~~----~~~~~-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~L~~n~l~~~~ 311 (419)
+...+ +|++|++++|.+...... .+... ++|++|+|++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 56665 999999999998876554 34455 5999999999999863 4445554 469999999999998654
Q ss_pred C----ccccCCCCCcEEEccCCcCcccCC-------CCC-CCCCccEEEcccCCCcccCCc
Q 014726 312 P----TSLQDLSTLQYLYLGNNNLSGELP-------VNI-IAPNLIALDVSYNPLSGNLPR 360 (419)
Q Consensus 312 p----~~~~~l~~L~~L~L~~N~l~~~~p-------~~~-~~~~L~~L~Ls~N~l~~~~p~ 360 (419)
+ ..+..+++|++|++++|.+.+..+ ..+ .+++|++||+++|++.+..|.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 4 345678999999999999543222 122 467899999999999877543
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.5e-24 Score=193.22 Aligned_cols=196 Identities=21% Similarity=0.248 Sum_probs=138.8
Q ss_pred CCCEEECcCCcCCccCCccccCCCCCcEeecccCc-CCCCCCCCcccCCccceeeccc-cccCCCCChhccCCCCcccee
Q 014726 104 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN-FTGRVPTELGNLTKLISLSFSS-NNFFGPLPKELGKLTSLQQLY 181 (419)
Q Consensus 104 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 181 (419)
+|++|++++|.+++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78889999888886666678888889999998886 7755566788888888888888 888766667788888888888
Q ss_pred cccccccccCChhhcCCCCCc---EEEccCC-cCCCCCchhhcCccccc-eeeccCCcCcccchhhcccCCCCCeEEcCC
Q 014726 182 IDSSGVTGSIPQEFANLKSLR---ILWASDN-LFTGKIPEFFGTLTELA-DLRLQGTLLEGPIPRSFRALNKLEDLRIGD 256 (419)
Q Consensus 182 L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 256 (419)
+++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ +|++++|.++ .+|..
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~-------------- 174 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY-------------- 174 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT--------------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh--------------
Confidence 88888875 555 77777777 8888877 77765556677777777 7777777666 33322
Q ss_pred CCCCCCCchhhcCCCCCCEEeccCCc-CcccCCccccCC-CCCCEEEeecCcccccCCccccCCCCCcEEEccCC
Q 014726 257 LSAEDSTLDFLESQKSLSILSLRNCR-VSGKIPDQLGTF-AKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 329 (419)
Q Consensus 257 n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 329 (419)
.+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 175 ---------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 ---------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ---------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred ---------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 2222 455666666663 654445556666 67777777777776 34433 4566777776655
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=5.3e-26 Score=218.91 Aligned_cols=241 Identities=20% Similarity=0.256 Sum_probs=131.7
Q ss_pred cCChhhhCCCCCCEEECcCCcCCccCC----ccccCCCCCcEeecccCcCC---CCCCCCc-------ccCCccceeecc
Q 014726 94 ELPSELFMLRKLMDLNLGQNVLNGSIP----AEIGQLSNMQYLSLGINNFT---GRVPTEL-------GNLTKLISLSFS 159 (419)
Q Consensus 94 ~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~---~~~p~~~-------~~l~~L~~L~Ls 159 (419)
.++..+..+++|++|++++|.+++..+ ..+..+++|++|+|++|.+. +.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 566778888888888888888876533 34667888888888886443 3444433 456666666666
Q ss_pred ccccCC----CCChhccCCCCccceecccccccccCChh----hcCC---------CCCcEEEccCCcCC-CCCc---hh
Q 014726 160 SNNFFG----PLPKELGKLTSLQQLYIDSSGVTGSIPQE----FANL---------KSLRILWASDNLFT-GKIP---EF 218 (419)
Q Consensus 160 ~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~l~~n~l~-~~~~---~~ 218 (419)
+|.++. .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|+++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 666654 24445555666666666666654322222 2222 55555555555554 2222 23
Q ss_pred hcCccccceeeccCCcCcc-----cchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCc----ccCCc
Q 014726 219 FGTLTELADLRLQGTLLEG-----PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS----GKIPD 289 (419)
Q Consensus 219 l~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~----~~~p~ 289 (419)
+..+++|++|++++|.++. ..+..+ ..+++|++|+|++|.++ +.+|.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l------------------------~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGL------------------------AYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTG------------------------GGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHh------------------------hcCCCccEEECcCCCCCcHHHHHHHH
Confidence 3444555555555554441 112233 44455555555555553 33444
Q ss_pred cccCCCCCCEEEeecCccccc----CCccc--cCCCCCcEEEccCCcCcc----cCCCCC-C-CCCccEEEcccCCCccc
Q 014726 290 QLGTFAKLQLLDLSFNKLTGQ----IPTSL--QDLSTLQYLYLGNNNLSG----ELPVNI-I-APNLIALDVSYNPLSGN 357 (419)
Q Consensus 290 ~~~~l~~L~~L~L~~n~l~~~----~p~~~--~~l~~L~~L~L~~N~l~~----~~p~~~-~-~~~L~~L~Ls~N~l~~~ 357 (419)
.+..+++|++|+|++|.+++. ++..+ +.+++|++|+|++|.+++ .+|..+ . +++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 555555555555555555543 23333 225555556665555554 244333 1 45566666666665544
Q ss_pred C
Q 014726 358 L 358 (419)
Q Consensus 358 ~ 358 (419)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.1e-25 Score=212.44 Aligned_cols=234 Identities=18% Similarity=0.193 Sum_probs=176.8
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCcc-CCccccCCCCCcEeecccCcCCCCCCCCcccCCccceee
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGS-IPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 157 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 157 (419)
.+++.++++++.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4789999999998877665 66899999999999999866 788899999999999999999877888899999999999
Q ss_pred cccc-ccCCC-CChhccCCCCccceecccc-ccccc-CChhhcCCC-CCcEEEccCC--cCC-CCCchhhcCccccceee
Q 014726 158 FSSN-NFFGP-LPKELGKLTSLQQLYIDSS-GVTGS-IPQEFANLK-SLRILWASDN--LFT-GKIPEFFGTLTELADLR 229 (419)
Q Consensus 158 Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~ 229 (419)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 56642 5666888999999999999 88854 577788899 9999999999 455 34566777888999999
Q ss_pred ccCCc-CcccchhhcccCCCCCeEEcCCCC-CCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcc
Q 014726 230 LQGTL-LEGPIPRSFRALNKLEDLRIGDLS-AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKL 307 (419)
Q Consensus 230 l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 307 (419)
+++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++...-..+. ..++.|++++|++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l 305 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF 305 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence 99888 666677777888888888887774 22222234566667777777666 3321111111 2244445566666
Q ss_pred cccCCcccc
Q 014726 308 TGQIPTSLQ 316 (419)
Q Consensus 308 ~~~~p~~~~ 316 (419)
++..|..++
T Consensus 306 ~~~~~~~~~ 314 (336)
T 2ast_B 306 TTIARPTIG 314 (336)
T ss_dssp CCTTCSSCS
T ss_pred ccccCCccc
Confidence 655555443
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.4e-26 Score=221.29 Aligned_cols=243 Identities=19% Similarity=0.228 Sum_probs=158.2
Q ss_pred CCccccCCCCCcEeecccCcCCCCC----CCCcccCCccceeecccccc---CCCCChhccCCCCccceecccccccccC
Q 014726 119 IPAEIGQLSNMQYLSLGINNFTGRV----PTELGNLTKLISLSFSSNNF---FGPLPKELGKLTSLQQLYIDSSGVTGSI 191 (419)
Q Consensus 119 ~p~~l~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 191 (419)
++..+..+++|++|++++|.++... +..+..+++|++|++++|.+ .+.+|..+. .+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-----------------~l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LL 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------HH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-----------------HH
Confidence 5555666667777777777666432 23355566666666666432 222333221 00
Q ss_pred ChhhcCCCCCcEEEccCCcCCC----CCchhhcCccccceeeccCCcCcccchhh----cccC---------CCCCeEEc
Q 014726 192 PQEFANLKSLRILWASDNLFTG----KIPEFFGTLTELADLRLQGTLLEGPIPRS----FRAL---------NKLEDLRI 254 (419)
Q Consensus 192 ~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~L 254 (419)
...+..+++|++|++++|.+++ .++..+..+++|++|++++|.++...+.. +..+ ++|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 1123455556666666665554 24445555566666666666554322222 2223 67777777
Q ss_pred CCCCCCCCCc----hhhcCCCCCCEEeccCCcCcc-----cCCccccCCCCCCEEEeecCccc----ccCCccccCCCCC
Q 014726 255 GDLSAEDSTL----DFLESQKSLSILSLRNCRVSG-----KIPDQLGTFAKLQLLDLSFNKLT----GQIPTSLQDLSTL 321 (419)
Q Consensus 255 ~~n~~~~~~~----~~~~~~~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L 321 (419)
++|.+..... ..+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 7777653322 355677889999999998873 34447888999999999999996 5678888999999
Q ss_pred cEEEccCCcCccc----CCCCC---CCCCccEEEcccCCCcc----cCCccc-cc-CCce-eEeecCCccc
Q 014726 322 QYLYLGNNNLSGE----LPVNI---IAPNLIALDVSYNPLSG----NLPRNF-AK-GGLS-MNVIGSSINA 378 (419)
Q Consensus 322 ~~L~L~~N~l~~~----~p~~~---~~~~L~~L~Ls~N~l~~----~~p~~~-~~-~~l~-~~~~~n~~~~ 378 (419)
++|+|++|.+++. ++..+ .+++|+.|+|++|.+++ .+|..+ .. +.++ +++.+|.+..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 9999999999865 34332 27899999999999998 588777 43 6776 6777777664
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=6.6e-24 Score=198.06 Aligned_cols=203 Identities=19% Similarity=0.154 Sum_probs=132.5
Q ss_pred CccceeeccccccCCCCChhc--cCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCcccccee
Q 014726 151 TKLISLSFSSNNFFGPLPKEL--GKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADL 228 (419)
Q Consensus 151 ~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 228 (419)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+..- ...+..+++|++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~--------------------~~~~~~~~~L~~L 150 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA--------------------ELQQWLKPGLKVL 150 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH--------------------HHHTTBCSCCCEE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH--------------------HHHhhhccCCCEE
Confidence 446666666666665555555 555666666666666554333100 0122234444444
Q ss_pred eccCCcCcccchhhcccCCCCCeEEcCCCCCCCC----CchhhcCCCCCCEEeccCCcCcccCCc----cccCCCCCCEE
Q 014726 229 RLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS----TLDFLESQKSLSILSLRNCRVSGKIPD----QLGTFAKLQLL 300 (419)
Q Consensus 229 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L 300 (419)
++++|.+.+..+..+..+++|++|++++|.+... ....+..+++|++|++++|+++ .++. .++.+++|++|
T Consensus 151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSE
T ss_pred EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEE
Confidence 4444444444444555555555555555543321 1123457899999999999997 3333 25778999999
Q ss_pred EeecCcccccCCccccCC---CCCcEEEccCCcCcccCCCCCCCCCccEEEcccCCCcccCCccccc-CCce-eEeecCC
Q 014726 301 DLSFNKLTGQIPTSLQDL---STLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSS 375 (419)
Q Consensus 301 ~L~~n~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~n~ 375 (419)
++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +.. +.++ +++.+|+
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTT
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCC
Confidence 999999998878777776 69999999999999 7786554 8999999999999964 43 344 6665 6777777
Q ss_pred ccc
Q 014726 376 INA 378 (419)
Q Consensus 376 ~~~ 378 (419)
+..
T Consensus 306 l~~ 308 (310)
T 4glp_A 306 FLV 308 (310)
T ss_dssp TSC
T ss_pred CCC
Confidence 653
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=9.1e-24 Score=189.51 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=154.1
Q ss_pred CCcEeecccCcCCCCCCCCcccCCccceeeccccc-cCCCCChhccCCCCccceeccc-ccccccCChhhcCCCCCcEEE
Q 014726 128 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN-FFGPLPKELGKLTSLQQLYIDS-SGVTGSIPQEFANLKSLRILW 205 (419)
Q Consensus 128 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 205 (419)
+|++|++++|.+++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 79999999999987666688899999999999997 7766666788889999999988 888866667788888888888
Q ss_pred ccCCcCCCCCchhhcCccccc---eeeccCC-cCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCC-EEeccC
Q 014726 206 ASDNLFTGKIPEFFGTLTELA---DLRLQGT-LLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLS-ILSLRN 280 (419)
Q Consensus 206 l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~-~L~Ls~ 280 (419)
+++|.+++ +|. +..+++|+ +|++++| .+++.. ...+..+++|+ +|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~------------------------~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP------------------------VNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC------------------------TTTTTTTBSSEEEEECCS
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC------------------------cccccchhcceeEEEcCC
Confidence 88888875 444 66666666 7777766 555332 23345567777 788888
Q ss_pred CcCcccCCc-cccCCCCCCEEEeecCc-ccccCCccccCC-CCCcEEEccCCcCcccCCCCCCCCCccEEEcccCC
Q 014726 281 CRVSGKIPD-QLGTFAKLQLLDLSFNK-LTGQIPTSLQDL-STLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNP 353 (419)
Q Consensus 281 n~l~~~~p~-~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~L~~L~Ls~N~ 353 (419)
|.++ .+|. .+.. ++|+.|++++|+ +++..+..|..+ ++|++|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 166 n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 166 NGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC-
T ss_pred CCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCcc
Confidence 8888 4444 4444 899999999995 987767788899 99999999999998 56644 67899999998874
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.1e-22 Score=189.37 Aligned_cols=193 Identities=26% Similarity=0.333 Sum_probs=115.0
Q ss_pred hCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccc
Q 014726 100 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (419)
Q Consensus 100 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (419)
.++++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 34556666777666665 333 46666677777777776663332 66666677777776666542 24666666666
Q ss_pred eecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCC
Q 014726 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (419)
Q Consensus 180 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 259 (419)
|++++|.+++ ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 6666666664 23 26666666666666666664332 5566666666666666654222 55566666666666555
Q ss_pred CCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCccc
Q 014726 260 EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 260 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (419)
..... +..+++|++|++++|.+++.. .+..+++|+.|++++|+++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 44322 455566666666666665333 2555666666666666665
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=8.5e-23 Score=190.24 Aligned_cols=206 Identities=22% Similarity=0.309 Sum_probs=145.9
Q ss_pred ECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccccccc
Q 014726 109 NLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVT 188 (419)
Q Consensus 109 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 188 (419)
.+..+.+++.+ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 34455554322 2456788999999999887 344 57888999999999998875443 888889999999988887
Q ss_pred ccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhc
Q 014726 189 GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLE 268 (419)
Q Consensus 189 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 268 (419)
+ ++ .+..+++|+.|++++|++++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+..... +.
T Consensus 99 ~-~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~ 170 (308)
T 1h6u_A 99 N-VS-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA 170 (308)
T ss_dssp C-CG-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred C-ch-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc
Confidence 5 33 678888888888888888754 3 37788888888888888875433 6777777777777776655332 66
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCc
Q 014726 269 SQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 269 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
.+++|++|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|+++
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 66777777777777764322 566677777777777776433 2566667777777777665
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.3e-22 Score=180.72 Aligned_cols=171 Identities=21% Similarity=0.268 Sum_probs=88.6
Q ss_pred eEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccc
Q 014726 81 ITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (419)
Q Consensus 81 v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (419)
.+.++++++.+. .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 345666665554 3443332 3566666666666655555566666666666666666655555555666666666666
Q ss_pred cccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccch
Q 014726 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (419)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (419)
|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 66555444455555555555555555554433444455555555555555554433344444444444444444443333
Q ss_pred hhcccCCCCCeEEc
Q 014726 241 RSFRALNKLEDLRI 254 (419)
Q Consensus 241 ~~~~~l~~L~~L~L 254 (419)
..+..+++|+.|++
T Consensus 173 ~~~~~l~~L~~L~l 186 (251)
T 3m19_A 173 GAFDRLGKLQTITL 186 (251)
T ss_dssp TTTTTCTTCCEEEC
T ss_pred HHHhCCCCCCEEEe
Confidence 33333333333333
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.8e-22 Score=180.30 Aligned_cols=179 Identities=21% Similarity=0.238 Sum_probs=87.4
Q ss_pred CCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccc
Q 014726 105 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (419)
Q Consensus 105 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 184 (419)
.++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 345555555555 4444333 3455555555555544444555555555555555555544444444444444444444
Q ss_pred ccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCc
Q 014726 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL 264 (419)
Q Consensus 185 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 264 (419)
|++++..+..+..+++|++|++++|++++..+..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------------------------------------------- 127 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--------------------------------------------- 127 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---------------------------------------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHh---------------------------------------------
Confidence 44443333333444444444444444332222222
Q ss_pred hhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCccc
Q 014726 265 DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE 334 (419)
Q Consensus 265 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 334 (419)
..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|++.+.
T Consensus 128 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 128 ---DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 2334444444444444433333455555555555555555544444555556666666666666543
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.4e-21 Score=185.41 Aligned_cols=239 Identities=19% Similarity=0.197 Sum_probs=170.0
Q ss_pred EEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCC-CCcccCCccce-eeccc
Q 014726 83 HLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVP-TELGNLTKLIS-LSFSS 160 (419)
Q Consensus 83 ~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~Ls~ 160 (419)
.++-++++++ .+|..+ .+++++|+|++|.|+...+..|.++++|++|+|++|.+.+.+| .+|.++++|++ +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4555666665 567655 3589999999999985445679999999999999999876555 47888888775 56667
Q ss_pred cccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccC-CcCCCCCchhhcCcc-ccceeeccCCcCccc
Q 014726 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASD-NLFTGKIPEFFGTLT-ELADLRLQGTLLEGP 238 (419)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~ 238 (419)
|+++...|..|..+++|++|++++|++....+..+....++..|++.+ +++....+..+..+. .++.|++++|+++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence 888877788899999999999999999876666666777888888865 456644445565554 57888999998884
Q ss_pred chhhcccCCCCCeEEcCC-CCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccC
Q 014726 239 IPRSFRALNKLEDLRIGD-LSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (419)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 317 (419)
++.......+|++|++.+ |.+.......|..+++|++|++++|+++ .+|. ..+.+|+.|.+.++.--..+| .+..
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCC-CTTT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCC-Cchh
Confidence 444444556777777764 5555555566777777777777777777 3443 234556666655544333555 3566
Q ss_pred CCCCcEEEccCC
Q 014726 318 LSTLQYLYLGNN 329 (419)
Q Consensus 318 l~~L~~L~L~~N 329 (419)
+++|+.+++.++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 777777777654
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=2.2e-21 Score=184.05 Aligned_cols=221 Identities=18% Similarity=0.104 Sum_probs=112.6
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCC-ccccCCCCCcE-eecccCcCCCCCCCCcccCCccceee
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIP-AEIGQLSNMQY-LSLGINNFTGRVPTELGNLTKLISLS 157 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~ 157 (419)
++++|++++|.+....+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+..|+++...|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 45666666666553333345666666666666666544333 23555555543 34445556555555566666666666
Q ss_pred ccccccCCCCChhccCCCCccceeccc-ccccccCChhhcCCC-CCcEEEccCCcCCCCCchhhcCccccceeeccC-Cc
Q 014726 158 FSSNNFFGPLPKELGKLTSLQQLYIDS-SGVTGSIPQEFANLK-SLRILWASDNLFTGKIPEFFGTLTELADLRLQG-TL 234 (419)
Q Consensus 158 Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~ 234 (419)
+++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++. ++.......+|+++++.+ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCc
Confidence 666666554444444455555555543 334433333444443 45566666666653 222222344566666653 34
Q ss_pred CcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecC
Q 014726 235 LEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 305 (419)
Q Consensus 235 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 305 (419)
++...+..|..+++|+.|++++|.++..+... +.+|+.|.+.++.--..+|. +..+++|+.+++.++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 44333334566666666666666655544332 23344444333322224442 455566666666543
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-21 Score=171.23 Aligned_cols=162 Identities=22% Similarity=0.239 Sum_probs=90.4
Q ss_pred CCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceec
Q 014726 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 182 (419)
Q Consensus 103 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 182 (419)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 46677777777766444445666666777777666666444445566666666666666665444444555555555555
Q ss_pred ccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCC
Q 014726 183 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS 262 (419)
Q Consensus 183 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 262 (419)
++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------------------- 161 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------------------- 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------------------------
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------------------------
Confidence 555555444444455555555555555554333333444444444444444222
Q ss_pred CchhhcCCCCCCEEeccCCcCcccCCccccCCC
Q 014726 263 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFA 295 (419)
Q Consensus 263 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 295 (419)
..++.|+.|+++.|.++|.+|..++.++
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 1334566666666667766666665444
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.7e-23 Score=212.57 Aligned_cols=212 Identities=16% Similarity=0.118 Sum_probs=114.6
Q ss_pred CChhccCCCCccceecccccccccCC-hhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccC-----------Cc
Q 014726 167 LPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQG-----------TL 234 (419)
Q Consensus 167 ~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~ 234 (419)
+|..+..+++|++|++++|.+++... ..+..+++|+.|+++++...+.++.....+++|++|++++ +.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 44455667788888888887654332 3356777888887773322222333345567777777772 44
Q ss_pred Cccc-chhhcccCCCCCeEEcCCCCCCCCCchhhcC-CCCCCEEecc----CCcCccc-----CCccccCCCCCCEEEee
Q 014726 235 LEGP-IPRSFRALNKLEDLRIGDLSAEDSTLDFLES-QKSLSILSLR----NCRVSGK-----IPDQLGTFAKLQLLDLS 303 (419)
Q Consensus 235 l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L~L~ 303 (419)
+++. ++.....+++|++|+++.+.+.......+.. +++|++|+++ .|.+++. ++..+..+++|+.|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 4432 2223445677777777555554443333433 6667777775 4455532 22224456666666665
Q ss_pred cCc--ccccCCcccc-CCCCCcEEEccCCcCccc-CCCCC-CCCCccEEEcccCCCcccCCcccc-c-CCce-eEeecCC
Q 014726 304 FNK--LTGQIPTSLQ-DLSTLQYLYLGNNNLSGE-LPVNI-IAPNLIALDVSYNPLSGNLPRNFA-K-GGLS-MNVIGSS 375 (419)
Q Consensus 304 ~n~--l~~~~p~~~~-~l~~L~~L~L~~N~l~~~-~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~-~-~~l~-~~~~~n~ 375 (419)
+|. +++..+..+. .+++|++|++++|.+++. ++... .+++|++|++++|++++.....+. . +.++ +.+.+|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 432 4433333332 256666666666666542 12111 346666666666666544333332 2 4444 5555555
Q ss_pred ccc
Q 014726 376 INA 378 (419)
Q Consensus 376 ~~~ 378 (419)
+..
T Consensus 525 it~ 527 (592)
T 3ogk_B 525 ASM 527 (592)
T ss_dssp CCT
T ss_pred CCH
Confidence 443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.6e-21 Score=169.68 Aligned_cols=103 Identities=22% Similarity=0.243 Sum_probs=48.5
Q ss_pred EEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccccc
Q 014726 107 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG 186 (419)
Q Consensus 107 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 186 (419)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4555555554 334322 2355555555555554444445555555555555555554333334444444444444444
Q ss_pred ccccCChhhcCCCCCcEEEccCCcCC
Q 014726 187 VTGSIPQEFANLKSLRILWASDNLFT 212 (419)
Q Consensus 187 l~~~~~~~~~~l~~L~~L~l~~n~l~ 212 (419)
+++..+..+..+++|++|++++|+++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCc
Confidence 44333333344444444444444443
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=2.5e-23 Score=211.35 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=67.6
Q ss_pred hhhcCCCCCcEEEccCCcCCCCCc-hhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCC-----------CCCC
Q 014726 193 QEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGD-----------LSAE 260 (419)
Q Consensus 193 ~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~~~ 260 (419)
..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ +.+.
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 334444455555555555432221 2234455555555552211122233334445555555552 1221
Q ss_pred CCC-chhhcCCCCCCEEeccCCcCcccCCccccC-CCCCCEEEee----cCccccc-----CCccccCCCCCcEEEccCC
Q 014726 261 DST-LDFLESQKSLSILSLRNCRVSGKIPDQLGT-FAKLQLLDLS----FNKLTGQ-----IPTSLQDLSTLQYLYLGNN 329 (419)
Q Consensus 261 ~~~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~L~~N 329 (419)
... ......+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|++|++++|
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 111 111233455555555555554443333333 4555555554 3344321 1122334455555555432
Q ss_pred c--CcccCCCCC--CCCCccEEEcccCCCcc
Q 014726 330 N--LSGELPVNI--IAPNLIALDVSYNPLSG 356 (419)
Q Consensus 330 ~--l~~~~p~~~--~~~~L~~L~Ls~N~l~~ 356 (419)
. +++..+..+ .+++|++|++++|.+++
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 2 332222111 13455555555555543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.9e-20 Score=185.92 Aligned_cols=215 Identities=24% Similarity=0.352 Sum_probs=136.6
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCe-eecCCCCcceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCcccc
Q 014726 47 INLTTIDPCTRN-ASWASENANPRV-ACDCTSNSCHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIG 124 (419)
Q Consensus 47 w~~~~~d~c~~~-~~w~~~~~~~~~-~c~~~~~~~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 124 (419)
|... .+||... ..| .++ .|.+. +++.|+++++.+.+ +|..+ +++|++|++++|.++ .+| .
T Consensus 36 W~~~-~~~~~~~~~~~------~~l~~C~~~----~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~ 97 (571)
T 3cvr_A 36 WEKQ-ALPGENRNEAV------SLLKECLIN----QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---E 97 (571)
T ss_dssp HHTT-CCTTCCHHHHH------HHHHHHHHT----TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---C
T ss_pred Hhcc-CCccccccchh------hhccccccC----CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---c
Confidence 5433 6778521 125 455 56542 57888888888765 66655 367888888888887 566 4
Q ss_pred CCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEE
Q 014726 125 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204 (419)
Q Consensus 125 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 204 (419)
.+++|++|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 165 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL 165 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE
Confidence 46778888888888875 565 554 78888888887775 444 46777777777777774 554 45677777
Q ss_pred EccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCc
Q 014726 205 WASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS 284 (419)
Q Consensus 205 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 284 (419)
++++|++++ +|. +. ++|+.|++++|.++ .+|. +.. +| ....+.|+.|+|++|.++
T Consensus 166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN-----------------HHSEETEIFFRCRENRIT 220 (571)
T ss_dssp ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------------------------CCEEEECCSSCCC
T ss_pred ECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh-----------------hcccccceEEecCCCcce
Confidence 777777765 444 44 66677777766666 3333 221 11 111233467777777776
Q ss_pred ccCCccccCCCCCCEEEeecCcccccCCccccC
Q 014726 285 GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 317 (419)
Q Consensus 285 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 317 (419)
.+|..+..+++|+.|+|++|.+++.+|..+..
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 56666666777777777777777666665544
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=5.7e-20 Score=183.85 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=19.3
Q ss_pred CEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCC
Q 014726 298 QLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELP 336 (419)
Q Consensus 298 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 336 (419)
+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 55555555555 344444445555555555555554443
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1e-19 Score=183.87 Aligned_cols=170 Identities=21% Similarity=0.284 Sum_probs=74.5
Q ss_pred CCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEE
Q 014726 125 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204 (419)
Q Consensus 125 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 204 (419)
.+++|++|++++|.+. .++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 3344444444444443 122 24444444444444444443222 3444444444444444442 11 34444444444
Q ss_pred EccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCc
Q 014726 205 WASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS 284 (419)
Q Consensus 205 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 284 (419)
+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+....+ +..+++|+.|+|++|.++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 4444444431 2244444444444444444432 234444444444444444433222 444555555555555554
Q ss_pred ccCCccccCCCCCCEEEeecCccc
Q 014726 285 GKIPDQLGTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 285 ~~~p~~~~~l~~L~~L~L~~n~l~ 308 (419)
+ ++ .+..+++|+.|+|++|++.
T Consensus 189 ~-l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 189 D-LR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp B-CG-GGTTCTTCSEEECCSEEEE
T ss_pred C-Ch-HHccCCCCCEEEccCCcCc
Confidence 3 22 3455555555555555554
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1e-19 Score=167.88 Aligned_cols=170 Identities=21% Similarity=0.287 Sum_probs=90.0
Q ss_pred CCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEE
Q 014726 126 LSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILW 205 (419)
Q Consensus 126 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 205 (419)
+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 3444444444444431 12 24444444444444444443222 4444444444444444442 11 244455555555
Q ss_pred ccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcc
Q 014726 206 ASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSG 285 (419)
Q Consensus 206 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 285 (419)
+++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+..... +..+++|++|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 555555432 2344555555555555555532 345555666666666665554332 5666777777777777774
Q ss_pred cCCccccCCCCCCEEEeecCcccc
Q 014726 286 KIPDQLGTFAKLQLLDLSFNKLTG 309 (419)
Q Consensus 286 ~~p~~~~~l~~L~~L~L~~n~l~~ 309 (419)
++ .+..+++|+.|++++|++..
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 34 37778888888888888774
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.7e-19 Score=165.10 Aligned_cols=171 Identities=25% Similarity=0.347 Sum_probs=93.4
Q ss_pred ccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccce
Q 014726 148 GNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 227 (419)
Q Consensus 148 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 227 (419)
..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|+.|++++|.+++ + ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 3455566666666655432 2 35555666666666666553322 5555666666666665553 2 22555566666
Q ss_pred eeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcc
Q 014726 228 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKL 307 (419)
Q Consensus 228 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 307 (419)
|++++|.+++. ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+ +..+++|+.|++++|++
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666655532 3455556666666666555443 345555666666666666554332 55556666666666665
Q ss_pred cccCCccccCCCCCcEEEccCCcCc
Q 014726 308 TGQIPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 308 ~~~~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
++ ++ .+..+++|+.|++++|++.
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-Ch-hhccCCCCCEEECcCCccc
Confidence 53 22 2555566666666666555
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.4e-19 Score=159.97 Aligned_cols=152 Identities=19% Similarity=0.261 Sum_probs=122.5
Q ss_pred EEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecccc
Q 014726 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (419)
Q Consensus 82 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (419)
+.++.+++++. .+|..+. +++++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34566666654 4555443 58899999999988666667888899999999999998777888888999999999999
Q ss_pred ccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 162 NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
+++...+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888666666788888888888888888777788888888888888888888777777888888888888888765
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=158.58 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=128.3
Q ss_pred EEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCC-ccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccc
Q 014726 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIP-AEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (419)
Q Consensus 82 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (419)
+.++++++.+. .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888775 4665543 357899999999986644 4588899999999999999877777899999999999999
Q ss_pred cccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
|.+++..+..|..+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+..+++|++|++++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999888777888899999999999999887788888889999999999999887788888888888888888887744
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=4.1e-19 Score=158.00 Aligned_cols=142 Identities=21% Similarity=0.264 Sum_probs=119.6
Q ss_pred cCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccC
Q 014726 94 ELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (419)
Q Consensus 94 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (419)
.+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|.+....+..|..+++|++|++++|++++..+..|..
T Consensus 33 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 33 SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 4454333 68999999999999877888999999999999999998665667888999999999999998777777888
Q ss_pred CCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 174 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999999999988 6788888889999999999998877667788888888888888887754
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2.8e-19 Score=180.64 Aligned_cols=172 Identities=26% Similarity=0.342 Sum_probs=106.3
Q ss_pred hCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccc
Q 014726 100 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (419)
Q Consensus 100 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (419)
..+++|+.|++++|.+. .++ .+..+++|++|+|++|.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 44556666666666665 233 35666666666666666664333 5666666666666666653 22 4566666666
Q ss_pred eecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCC
Q 014726 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (419)
Q Consensus 180 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 259 (419)
|+|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 6666666663 2 3466666666666666666643 456666666666666666665444 66666677777766666
Q ss_pred CCCCchhhcCCCCCCEEeccCCcCcc
Q 014726 260 EDSTLDFLESQKSLSILSLRNCRVSG 285 (419)
Q Consensus 260 ~~~~~~~~~~~~~L~~L~Ls~n~l~~ 285 (419)
... ..+..+++|+.|+|++|.+.+
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcC
Confidence 543 346666777777777777664
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3.9e-19 Score=157.07 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=118.9
Q ss_pred CEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccc
Q 014726 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (419)
Q Consensus 106 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 185 (419)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56888888887 6676554 67899999999988766678888888999999998888777888888888888888888
Q ss_pred cccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCC
Q 014726 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 259 (419)
Q Consensus 186 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 259 (419)
.++...+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 88865555677888888888888888877777788888888888888887766666666666666666666554
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.4e-19 Score=170.70 Aligned_cols=177 Identities=19% Similarity=0.159 Sum_probs=141.9
Q ss_pred EEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCcccc-CCCCCcEeecccCcCCCCCCCCcccCCccceeeccc
Q 014726 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIG-QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (419)
Q Consensus 82 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (419)
+.++++++++. .+|..+. +.++.|+|++|.+++..+..+. ++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777775 4565443 3689999999999876777777 899999999999999977777899999999999999
Q ss_pred cccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhh---cCccccceeeccCCcCcc
Q 014726 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFF---GTLTELADLRLQGTLLEG 237 (419)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~ 237 (419)
|++++..+..|..+++|++|+|++|++.+..+..|..+++|+.|+|++|++++..+..+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987777778899999999999999988778889999999999999999986555555 568888888888888886
Q ss_pred cchhhcccCCC--CCeEEcCCCCCCC
Q 014726 238 PIPRSFRALNK--LEDLRIGDLSAED 261 (419)
Q Consensus 238 ~~~~~~~~l~~--L~~L~L~~n~~~~ 261 (419)
..+..+..++. ++.|++++|.+.-
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 66667777766 3677777776543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=155.99 Aligned_cols=152 Identities=21% Similarity=0.238 Sum_probs=117.1
Q ss_pred CEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCC-CCcccCCccceeeccccccCCCCChhccCCCCccceeccc
Q 014726 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVP-TELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (419)
Q Consensus 106 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 184 (419)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888887 5676553 357888999988886544 4578888888888888888877777788888888888888
Q ss_pred ccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCC
Q 014726 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (419)
Q Consensus 185 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 260 (419)
|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8888777777888888888888888888777777777888888888888877766777776666666666666543
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3.1e-19 Score=169.90 Aligned_cols=176 Identities=20% Similarity=0.153 Sum_probs=144.8
Q ss_pred CEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcc-cCCccceeeccccccCCCCChhccCCCCccceeccc
Q 014726 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELG-NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (419)
Q Consensus 106 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 184 (419)
+.++++++.++ .+|..+. ..+++|+|++|.+++..+..|. .+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57899999998 5776554 4689999999999977777787 899999999999999987778899999999999999
Q ss_pred ccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhc---ccCCCCCeEEcCCCCCCC
Q 014726 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSF---RALNKLEDLRIGDLSAED 261 (419)
Q Consensus 185 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~~~~ 261 (419)
|+++...+..|..+++|+.|+|++|++++..+..|..+++|++|++++|.+++..+..+ ..+++|+.|+|++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99997777788999999999999999998778889999999999999999886555555 567888888888887777
Q ss_pred CCchhhcCCCC--CCEEeccCCcCc
Q 014726 262 STLDFLESQKS--LSILSLRNCRVS 284 (419)
Q Consensus 262 ~~~~~~~~~~~--L~~L~Ls~n~l~ 284 (419)
.....+..++. ++.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66666666665 367777777765
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=1.9e-20 Score=190.09 Aligned_cols=293 Identities=15% Similarity=0.162 Sum_probs=157.7
Q ss_pred ceeEEEEeecC-ccccc-CChhhhCCCCCCEEECcCCcCCccCCccc----cCCCCCcEeecccCc--CCC-CCCCCccc
Q 014726 79 CHITHLKIYAL-DIMGE-LPSELFMLRKLMDLNLGQNVLNGSIPAEI----GQLSNMQYLSLGINN--FTG-RVPTELGN 149 (419)
Q Consensus 79 ~~v~~L~l~~~-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~--l~~-~~p~~~~~ 149 (419)
++++.|++.++ .+... ++..+..+++|++|++++|.+++..+..+ ..+++|++|++++|. ++. .++..+..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 47889999888 44332 44445578899999999888765443333 356678888887775 210 01111223
Q ss_pred CCccceeeccccc--------------------------------------------------cCCC----CChhccCCC
Q 014726 150 LTKLISLSFSSNN--------------------------------------------------FFGP----LPKELGKLT 175 (419)
Q Consensus 150 l~~L~~L~Ls~n~--------------------------------------------------l~~~----~p~~l~~l~ 175 (419)
+++|++|++++|. +... ++..+..++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 4666666666541 1111 111122457
Q ss_pred CccceecccccccccC-ChhhcCCCCCcEEEccCCcCCCC-CchhhcCccccceeec-----------------------
Q 014726 176 SLQQLYIDSSGVTGSI-PQEFANLKSLRILWASDNLFTGK-IPEFFGTLTELADLRL----------------------- 230 (419)
Q Consensus 176 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l----------------------- 230 (419)
+|++|++++|.+++.. ...+..+++|+.|++++| +.+. ++.....+++|++|++
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 7888888777755322 222446666777766665 2211 1111123444444444
Q ss_pred -----------cCCcCcccchhhcc-cCCCCCeEEcC--C----CCCCCCC-----chhhcCCCCCCEEeccCCcCcccC
Q 014726 231 -----------QGTLLEGPIPRSFR-ALNKLEDLRIG--D----LSAEDST-----LDFLESQKSLSILSLRNCRVSGKI 287 (419)
Q Consensus 231 -----------~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~~~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~~ 287 (419)
..+.+++.....+. .+++|+.|+++ + +.++... ...+..+++|++|++++ .+++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 44444433333332 35666666666 2 2222111 11244566677777765 444444
Q ss_pred CccccC-CCCCCEEEeecCcccccCCccc-cCCCCCcEEEccCCcCcccCCCCC--CCCCccEEEcccCCCcccCCcccc
Q 014726 288 PDQLGT-FAKLQLLDLSFNKLTGQIPTSL-QDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNFA 363 (419)
Q Consensus 288 p~~~~~-l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~L~Ls~N~l~~~~p~~~~ 363 (419)
+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++...... .+++|++|++++|+++..-...+.
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 527 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG 527 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH
Confidence 444433 6777777777777765444433 456777777777777754332212 256777777777777543333332
Q ss_pred c--CCceeEeec
Q 014726 364 K--GGLSMNVIG 373 (419)
Q Consensus 364 ~--~~l~~~~~~ 373 (419)
. +.+.+....
T Consensus 528 ~~lp~l~i~~~~ 539 (594)
T 2p1m_B 528 QKMPKLNVEVID 539 (594)
T ss_dssp HHCTTEEEEEEC
T ss_pred HhCCCCEEEEec
Confidence 2 555544433
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.4e-18 Score=152.99 Aligned_cols=149 Identities=25% Similarity=0.234 Sum_probs=112.4
Q ss_pred EECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccc
Q 014726 108 LNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGV 187 (419)
Q Consensus 108 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 187 (419)
++.+++.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++....+..|..+++|++|++++|++
T Consensus 24 v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 24 VDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 344445554 5665443 7899999999999988788888999999999999998766666778888888888888888
Q ss_pred cccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCC
Q 014726 188 TGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 260 (419)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 260 (419)
++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8666666788888888888888887 56677777778888888888777555555666666666666555443
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=6.9e-21 Score=193.36 Aligned_cols=296 Identities=13% Similarity=0.088 Sum_probs=187.5
Q ss_pred ceeEEEEeecCcccccCChhhh-CCCCCCEEECcCC-cCCcc-CCccccCCCCCcEeecccCcCCCCCCCCc----ccCC
Q 014726 79 CHITHLKIYALDIMGELPSELF-MLRKLMDLNLGQN-VLNGS-IPAEIGQLSNMQYLSLGINNFTGRVPTEL----GNLT 151 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l~ 151 (419)
.++++|+++++.+.+..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4799999999998887777775 7999999999999 55533 44445689999999999999876544433 3677
Q ss_pred ccceeeccccccCCCCChh----ccCCCCccceeccccc-----------------------------------------
Q 014726 152 KLISLSFSSNNFFGPLPKE----LGKLTSLQQLYIDSSG----------------------------------------- 186 (419)
Q Consensus 152 ~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~n~----------------------------------------- 186 (419)
+|++|++++|. ....... +..+++|++|++++|.
T Consensus 185 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred cCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 99999999987 2111222 2346888888888761
Q ss_pred ---------ccc----cCChhhcCCCCCcEEEccCCcCCCCC-chhhcCccccceeeccCCcCc-ccchhhcccCCCCCe
Q 014726 187 ---------VTG----SIPQEFANLKSLRILWASDNLFTGKI-PEFFGTLTELADLRLQGTLLE-GPIPRSFRALNKLED 251 (419)
Q Consensus 187 ---------l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 251 (419)
+.. .++..+..+++|+.|++++|.+++.. ...+..+++|++|++++| +. ..++.....+++|++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 000 12222235689999999999976432 234678999999999988 43 223334445788888
Q ss_pred EEcCC---------CCCCCCCchhh-cCCCCCCEEeccCCcCcccCCccc------------------------------
Q 014726 252 LRIGD---------LSAEDSTLDFL-ESQKSLSILSLRNCRVSGKIPDQL------------------------------ 291 (419)
Q Consensus 252 L~L~~---------n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~------------------------------ 291 (419)
|++.+ +.+.......+ ..+++|++|.+..+.+++..+..+
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 88843 22221111111 224555555555554443332222
Q ss_pred ------cCCCCCCEEEeecCcccccCCccccC-CCCCcEEEccCCcCcccCCCCC--CCCCccEEEcccCCCcccCCccc
Q 014726 292 ------GTFAKLQLLDLSFNKLTGQIPTSLQD-LSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNF 362 (419)
Q Consensus 292 ------~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~~--~~~~L~~L~Ls~N~l~~~~p~~~ 362 (419)
..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ .+++|++|+|++|++++..+..+
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 3344455555544 333332333333 6778888888888765433222 36889999999999865554444
Q ss_pred cc--CCce-eEeecCCcc
Q 014726 363 AK--GGLS-MNVIGSSIN 377 (419)
Q Consensus 363 ~~--~~l~-~~~~~n~~~ 377 (419)
.. +.++ +.+.+|.+.
T Consensus 502 ~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp GGGGGGSSEEEEESSCCB
T ss_pred HHhCCCCCEEeeeCCCCC
Confidence 43 5665 667777663
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.7e-18 Score=150.33 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=70.9
Q ss_pred CCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEE
Q 014726 125 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204 (419)
Q Consensus 125 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 204 (419)
.+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3444555555555554 333 3445555555555555332 12244445555555555555544444444455555555
Q ss_pred EccCCcCCCCCchhhcCccccceeeccCCc-CcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcC
Q 014726 205 WASDNLFTGKIPEFFGTLTELADLRLQGTL-LEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRV 283 (419)
Q Consensus 205 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l 283 (419)
++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-------------------------~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-------------------------PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-------------------------GGGGCSSCCEEECTTBCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-------------------------hhcCCCCCCEEECCCCCC
Confidence 555555544444444444445555554444 22 222 233444444555555555
Q ss_pred cccCCccccCCCCCCEEEeecCccc
Q 014726 284 SGKIPDQLGTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 284 ~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (419)
++ ++ .+..+++|++|++++|++.
T Consensus 172 ~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CC-CT-TGGGCSSCCEEEECBC---
T ss_pred cC-hH-HhccCCCCCEEEeeCcccC
Confidence 42 22 3455555555555555554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=9.3e-19 Score=151.93 Aligned_cols=151 Identities=22% Similarity=0.170 Sum_probs=84.2
Q ss_pred hCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccc
Q 014726 100 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 179 (419)
Q Consensus 100 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 179 (419)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455566666666555 344 4555666666666666443 2234555666666666666665545555666666666
Q ss_pred eecccccccccCChhhcCCCCCcEEEccCCc-CCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCC
Q 014726 180 LYIDSSGVTGSIPQEFANLKSLRILWASDNL-FTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 258 (419)
Q Consensus 180 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 258 (419)
|++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 6666666665555566666666666666665 33 333 45556666666666666553 22 34444444444444443
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=2.8e-21 Score=194.03 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=65.2
Q ss_pred cceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeec
Q 014726 225 LADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSF 304 (419)
Q Consensus 225 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 304 (419)
|+.|++++|.+++ +|. +..+++|+.|++++|.+. ..+..+..+++|++|+|++|.+++ +| .++.+++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4455555555543 333 455555555555555544 223345555555666666666653 44 556666666666666
Q ss_pred CcccccC-CccccCCCCCcEEEccCCcCcccCCCCC----CCCCccEEEc
Q 014726 305 NKLTGQI-PTSLQDLSTLQYLYLGNNNLSGELPVNI----IAPNLIALDV 349 (419)
Q Consensus 305 n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~~~L~~L~L 349 (419)
|++++.. |..+..+++|+.|+|++|++++..|... .+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6666544 6666666666666666666665444221 1456666543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=4.1e-21 Score=192.85 Aligned_cols=190 Identities=19% Similarity=0.184 Sum_probs=137.3
Q ss_pred CCCCCcEeecccCcCCCCCCCCcccCCccceeeccccc-------------cCCCCChhccCCCCcccee-ccc------
Q 014726 125 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN-------------FFGPLPKELGKLTSLQQLY-IDS------ 184 (419)
Q Consensus 125 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-L~~------ 184 (419)
.+++|+.|+|++|.+. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 3444455555555444 444444445555555544332 2334445555555555555 343
Q ss_pred -------ccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCC
Q 014726 185 -------SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL 257 (419)
Q Consensus 185 -------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 257 (419)
|.+.. ++. ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|+|++|
T Consensus 426 ~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 426 RSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence 33332 111 358999999999996 565 899999999999999998 78889999999999999999
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCcCcccC-CccccCCCCCCEEEeecCcccccCCcc---ccCCCCCcEEEc
Q 014726 258 SAEDSTLDFLESQKSLSILSLRNCRVSGKI-PDQLGTFAKLQLLDLSFNKLTGQIPTS---LQDLSTLQYLYL 326 (419)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L 326 (419)
.+...+ .+..+++|++|+|++|.+++.. |..++.+++|+.|+|++|.+++..|.. +..+++|+.|++
T Consensus 497 ~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 988743 7899999999999999999776 999999999999999999999665432 234789999864
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2e-19 Score=186.01 Aligned_cols=218 Identities=19% Similarity=0.186 Sum_probs=95.1
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCE-----EECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCcc
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMD-----LNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKL 153 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~-----L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 153 (419)
++++.|++.++.+.. .+..+.....|+. +++..|.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 357777777766654 2332222222222 222233333 34556777777777777777776 566666677777
Q ss_pred ceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCC
Q 014726 154 ISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT 233 (419)
Q Consensus 154 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 233 (419)
++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 77777777777 66777777777777777777777 56777777777777777777776 55666777777777777777
Q ss_pred cCcccchhhcccCCC-CCeEEcCCCCCCCCCchhhcCCCCCCEEeccCC--------cCcccCCccccCCCCCCEEEeec
Q 014726 234 LLEGPIPRSFRALNK-LEDLRIGDLSAEDSTLDFLESQKSLSILSLRNC--------RVSGKIPDQLGTFAKLQLLDLSF 304 (419)
Q Consensus 234 ~l~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n--------~l~~~~p~~~~~l~~L~~L~L~~ 304 (419)
.+++.+|..+..+.. +..+++++|.+....+ ..|+.|++++| .+.+..+..+..+..++...+++
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC----------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 777766666644321 1224555555543322 33445555554 22222333334445555556666
Q ss_pred Cccc
Q 014726 305 NKLT 308 (419)
Q Consensus 305 n~l~ 308 (419)
|.+.
T Consensus 401 Nil~ 404 (727)
T 4b8c_D 401 NTLC 404 (727)
T ss_dssp -CCC
T ss_pred cccc
Confidence 6553
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3.1e-18 Score=155.55 Aligned_cols=169 Identities=21% Similarity=0.246 Sum_probs=106.2
Q ss_pred CCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEE
Q 014726 125 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204 (419)
Q Consensus 125 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 204 (419)
.+.++..++++++.+++ ++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 35567777777777763 33 46777788888888887763 34 56777788888888877775333 7777777777
Q ss_pred EccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCc
Q 014726 205 WASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS 284 (419)
Q Consensus 205 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 284 (419)
++++|++++. +. +.. ++|++|++++|.+++. + .+..+++|+.|++++|.+... ..+..+++|++|++++|.++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 7777777753 22 222 6777777777776642 2 455666666666666655443 24555555555555555555
Q ss_pred ccCCccccCCCCCCEEEeecCccc
Q 014726 285 GKIPDQLGTFAKLQLLDLSFNKLT 308 (419)
Q Consensus 285 ~~~p~~~~~l~~L~~L~L~~n~l~ 308 (419)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 43 34455555555555555555
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=5.5e-18 Score=153.90 Aligned_cols=169 Identities=20% Similarity=0.259 Sum_probs=108.0
Q ss_pred CCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCcccee
Q 014726 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (419)
Q Consensus 102 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 181 (419)
+.+++.++++.+.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 3345555666666653 22 4566677777777777766 344 56667777777777777664433 66777777777
Q ss_pred cccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCC
Q 014726 182 IDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261 (419)
Q Consensus 182 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 261 (419)
+++|++++ ++. +.. ++|+.|++++|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|.+..
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 77777764 332 222 6777777777777643 2466677777777777776643 3 56667777777777776665
Q ss_pred CCchhhcCCCCCCEEeccCCcCcc
Q 014726 262 STLDFLESQKSLSILSLRNCRVSG 285 (419)
Q Consensus 262 ~~~~~~~~~~~L~~L~Ls~n~l~~ 285 (419)
. ..+..+++|+.|++++|.+++
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 4 456666777777777777663
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2e-18 Score=178.46 Aligned_cols=219 Identities=20% Similarity=0.243 Sum_probs=121.5
Q ss_pred CCCCEEECcCCcCCccCCccccCCCCCcE-----eecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCc
Q 014726 103 RKLMDLNLGQNVLNGSIPAEIGQLSNMQY-----LSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSL 177 (419)
Q Consensus 103 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~-----L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 177 (419)
+.++.|+|.+|.+.. .+..+-...+|+. ++++.|.+. ..+..|..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 457788888888774 3433322223333 233334444 55778899999999999999998 677777799999
Q ss_pred cceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCC
Q 014726 178 QQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL 257 (419)
Q Consensus 178 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 257 (419)
++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999999 88999999999999999999999 77889999999999999999997 67888999999999999999
Q ss_pred CCCCCCchhhcCCC-CCCEEeccCCcCcccCCccccCCCCCCEEEeecC--------cccccCCccccCCCCCcEEEccC
Q 014726 258 SAEDSTLDFLESQK-SLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN--------KLTGQIPTSLQDLSTLQYLYLGN 328 (419)
Q Consensus 258 ~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--------~l~~~~p~~~~~l~~L~~L~L~~ 328 (419)
.+....+..+.... .+..++|++|.+++.+|. .|+.|+++.| .+.+..+..+..+..+....+++
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 98876555554332 223478899999887775 4556667666 33333344445566667777777
Q ss_pred CcCcc
Q 014726 329 NNLSG 333 (419)
Q Consensus 329 N~l~~ 333 (419)
|.+.+
T Consensus 401 Nil~~ 405 (727)
T 4b8c_D 401 NTLCQ 405 (727)
T ss_dssp -CCCG
T ss_pred ccccc
Confidence 77753
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2.4e-17 Score=154.83 Aligned_cols=261 Identities=13% Similarity=0.049 Sum_probs=154.8
Q ss_pred ceeEEEEeecCcccccCChhhhC-CCCCCEEECcCCcCC--ccCCccccCCCCCcEeecccCcCCCCCCCCccc------
Q 014726 79 CHITHLKIYALDIMGELPSELFM-LRKLMDLNLGQNVLN--GSIPAEIGQLSNMQYLSLGINNFTGRVPTELGN------ 149 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~-l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------ 149 (419)
.+++.|.+++. +.+.--..+.. +++|++|||++|.+. ..... .++.++.+.+..+.+ .+.+|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccccc
Confidence 36788888764 21111123444 788999999999887 11111 111123333333322 2234444
Q ss_pred --CCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcC----CCCCchhhc---
Q 014726 150 --LTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLF----TGKIPEFFG--- 220 (419)
Q Consensus 150 --l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~l~--- 220 (419)
+++|++|++.+ .++...+.+|.++++|+.++++.|.+....+..|..+.++..+.+..+.. .......|.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 56666666655 55544445566666666666666655544444555544444444433111 000011111
Q ss_pred -----------------------CccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEe
Q 014726 221 -----------------------TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILS 277 (419)
Q Consensus 221 -----------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 277 (419)
...+++.+.+.++-...........+++|+.+++++|.+.......|.++.+|++|+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 233444555544322211111223478899999998888877888888999999999
Q ss_pred ccCCcCcccCCccccCCCCCC-EEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCCC-CCCCccEEEc
Q 014726 278 LRNCRVSGKIPDQLGTFAKLQ-LLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDV 349 (419)
Q Consensus 278 Ls~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~L~~L~L 349 (419)
+.+| +....+.+|..+++|+ .+++.+ .++...+.+|.++++|+.+++++|.++..-+..+ .+++|+.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9887 7666777888899998 999988 7776667888899999999998898884333333 3678887753
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=6.7e-17 Score=139.54 Aligned_cols=132 Identities=22% Similarity=0.293 Sum_probs=101.1
Q ss_pred EEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCc-cccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccc
Q 014726 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPA-EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (419)
Q Consensus 82 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (419)
+.++++++++ +.+|..+.. ++++|++++|.+++..+. .|+.+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5677777777 356655433 788888888888755443 377888888888888888877778888888888888888
Q ss_pred cccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCc
Q 014726 161 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP 216 (419)
Q Consensus 161 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 216 (419)
|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887777777788888888888888887777778788888888888887776543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=6.6e-17 Score=136.42 Aligned_cols=132 Identities=23% Similarity=0.237 Sum_probs=95.0
Q ss_pred CCCCEEECcCCcCC-ccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCcccee
Q 014726 103 RKLMDLNLGQNVLN-GSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (419)
Q Consensus 103 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 181 (419)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57778888888776 56677677777888888888877744 6677777788888888877766676666677777777
Q ss_pred cccccccccC-ChhhcCCCCCcEEEccCCcCCCCCc---hhhcCccccceeeccCCcCc
Q 014726 182 IDSSGVTGSI-PQEFANLKSLRILWASDNLFTGKIP---EFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 182 L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 236 (419)
+++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777777432 2567777777777777777775544 46667777777777777655
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.5e-16 Score=137.34 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=78.1
Q ss_pred CCCeEEcCCCCCCCCCch-hhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEc
Q 014726 248 KLEDLRIGDLSAEDSTLD-FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYL 326 (419)
Q Consensus 248 ~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 326 (419)
++++|++++|.+...... .+..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555554443332 3556677777777777777666777777777777777777777766666777777778888
Q ss_pred cCCcCcccCCCCC-CCCCccEEEcccCCCcccCCcc
Q 014726 327 GNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRN 361 (419)
Q Consensus 327 ~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~ 361 (419)
++|++++..|..+ .+++|++|+|++|++++..+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 8777777666555 3677888888888877665543
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2.4e-17 Score=154.82 Aligned_cols=259 Identities=12% Similarity=0.046 Sum_probs=181.0
Q ss_pred CCCCCCEEECcCCcCCccCCccccC-CCCCcEeecccCcCC--CCCCCCcccCCccceeeccccccCCCCChhccC----
Q 014726 101 MLRKLMDLNLGQNVLNGSIPAEIGQ-LSNMQYLSLGINNFT--GRVPTELGNLTKLISLSFSSNNFFGPLPKELGK---- 173 (419)
Q Consensus 101 ~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~---- 173 (419)
.+.+++.|.++++ +...-...+.. +++|++|||++|++. ...+. .++.++.+.+..|.+ .+..|.+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccc
Confidence 3568899998864 22111223444 789999999999987 22222 233355666666643 3456777
Q ss_pred ----CCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcC----cccchhhccc
Q 014726 174 ----LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL----EGPIPRSFRA 245 (419)
Q Consensus 174 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~~~~ 245 (419)
+++|+.+++.+ .++..-+.+|.++++|+.+++.+|.+....+..|..+.++..+.+..+.. .......|.+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 99999999999 88866677899999999999999998877778888888887777665321 1111223333
Q ss_pred CCCCC--------------------------eEEcCCCCCCCCCchh-hcCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 014726 246 LNKLE--------------------------DLRIGDLSAEDSTLDF-LESQKSLSILSLRNCRVSGKIPDQLGTFAKLQ 298 (419)
Q Consensus 246 l~~L~--------------------------~L~L~~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 298 (419)
+..|+ .+.+.++-. ...... ...+++|+++++++|+++...+.+|..+++|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 44443 333322210 001111 12379999999999999977777899999999
Q ss_pred EEEeecCcccccCCccccCCCCCc-EEEccCCcCcccCCCCC-CCCCccEEEcccCCCcccCCccccc-CCceeE
Q 014726 299 LLDLSFNKLTGQIPTSLQDLSTLQ-YLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLSMN 370 (419)
Q Consensus 299 ~L~L~~n~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~~~ 370 (419)
.+++.+| +....+.+|.++++|+ .+++.+ .++..-+..+ .+++|+.+++++|.++..-+..|.. .+|+..
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 9999998 7767777899999999 999998 6763333344 4799999999999999666667776 777644
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.6e-16 Score=134.07 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=98.9
Q ss_pred CCCCcEeecccCcCC-CCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEE
Q 014726 126 LSNMQYLSLGINNFT-GRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204 (419)
Q Consensus 126 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 204 (419)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467899999999887 67788888889999999999988765 667888888888888888887677777778888888
Q ss_pred EccCCcCCCCC-chhhcCccccceeeccCCcCcccch---hhcccCCCCCeEEcCCCCC
Q 014726 205 WASDNLFTGKI-PEFFGTLTELADLRLQGTLLEGPIP---RSFRALNKLEDLRIGDLSA 259 (419)
Q Consensus 205 ~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~~ 259 (419)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 88888887542 2667777778888888777765433 3455555555555544433
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=5.6e-17 Score=133.96 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=69.3
Q ss_pred CCCCEEECcCCcCC-ccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCcccee
Q 014726 103 RKLMDLNLGQNVLN-GSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (419)
Q Consensus 103 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 181 (419)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45555556666666666666666533 4555566666666666666554555555555555555
Q ss_pred ccccccccc-CChhhcCCCCCcEEEccCCcCCCCCc---hhhcCccccceeec
Q 014726 182 IDSSGVTGS-IPQEFANLKSLRILWASDNLFTGKIP---EFFGTLTELADLRL 230 (419)
Q Consensus 182 L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l 230 (419)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555532 22445555555555555555554333 24444455555444
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.3e-16 Score=131.86 Aligned_cols=128 Identities=21% Similarity=0.159 Sum_probs=101.9
Q ss_pred CCCCcEeecccCcCC-CCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEE
Q 014726 126 LSNMQYLSLGINNFT-GRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 204 (419)
Q Consensus 126 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 204 (419)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467899999999887 67888888889999999999988765 667888888888888888887677777778888888
Q ss_pred EccCCcCCCC-CchhhcCccccceeeccCCcCcccch---hhcccCCCCCeEEcC
Q 014726 205 WASDNLFTGK-IPEFFGTLTELADLRLQGTLLEGPIP---RSFRALNKLEDLRIG 255 (419)
Q Consensus 205 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~ 255 (419)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888753 33677788888888888888876544 467777777777664
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=7.6e-16 Score=132.96 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=95.1
Q ss_pred EEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecccc
Q 014726 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (419)
Q Consensus 82 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (419)
+.++++++++. .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45667777664 4555432 47888888888887 67777888888888888888888766677888888888888888
Q ss_pred ccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCC
Q 014726 162 NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG 213 (419)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 213 (419)
++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8877777777777888888888888775555567777777777777777653
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.6e-15 Score=128.98 Aligned_cols=132 Identities=23% Similarity=0.307 Sum_probs=94.9
Q ss_pred EEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecccc
Q 014726 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (419)
Q Consensus 82 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (419)
+.++++++++. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45566666654 344333 357888888888887555556778888888888888887665666778888888888888
Q ss_pred ccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCc
Q 014726 162 NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP 216 (419)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 216 (419)
++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8876666667777888888888888775555556777778888888777775543
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.7e-15 Score=128.79 Aligned_cols=133 Identities=24% Similarity=0.272 Sum_probs=114.5
Q ss_pred CCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccc
Q 014726 105 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (419)
Q Consensus 105 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 184 (419)
.+.++++++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467899999887 566544 36899999999999976667789999999999999999877777788999999999999
Q ss_pred ccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccch
Q 014726 185 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 240 (419)
Q Consensus 185 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 240 (419)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99997777778899999999999999997776777889999999999999987654
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=131.35 Aligned_cols=128 Identities=26% Similarity=0.305 Sum_probs=115.5
Q ss_pred CEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccc
Q 014726 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (419)
Q Consensus 106 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 185 (419)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57899999998 6776553 58999999999998 78889999999999999999999888888999999999999999
Q ss_pred cccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcc
Q 014726 186 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 237 (419)
Q Consensus 186 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 237 (419)
.+++..+..|..+++|+.|++++|.++...+..|..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998888889999999999999999997777789999999999999998863
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=7.7e-14 Score=134.04 Aligned_cols=250 Identities=9% Similarity=0.035 Sum_probs=150.1
Q ss_pred CCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCcccee
Q 014726 102 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 181 (419)
Q Consensus 102 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 181 (419)
+..++.+.+..+ ++.....+|.++ +|+.+.+..+ ++.+...+|.+. +|+.+.+.. .+....+..|.++.+|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 355666666542 332334456654 5777777655 543444566663 577777764 45545556677777777777
Q ss_pred cccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCC
Q 014726 182 IDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 261 (419)
Q Consensus 182 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 261 (419)
+..|.++......|. ..+|+.+.+..+ +.......|..+++|+.+++..+ ++......|.+ .+|+.+.+.+ .+..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence 777776643334444 467777777643 55455566777777777777654 34344445555 6677777733 3444
Q ss_pred CCchhhcCCCCCCEEeccCCcCc-----ccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCC
Q 014726 262 STLDFLESQKSLSILSLRNCRVS-----GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELP 336 (419)
Q Consensus 262 ~~~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 336 (419)
.....|..+++|+.+++.++.+. ...+.+|..+++|+.+++.+ .++.....+|.++++|+.+.+..| ++..-+
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 45566777777777777776554 34455677777777777773 455455566777777777777554 442222
Q ss_pred CCC-CCCCccEEEcccCCCcccCCccccc
Q 014726 337 VNI-IAPNLIALDVSYNPLSGNLPRNFAK 364 (419)
Q Consensus 337 ~~~-~~~~L~~L~Ls~N~l~~~~p~~~~~ 364 (419)
..+ .+ +|+.+++++|.+....+..|..
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 223 24 7777777777766444444444
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=7.2e-14 Score=134.24 Aligned_cols=247 Identities=10% Similarity=0.060 Sum_probs=193.9
Q ss_pred hhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCC
Q 014726 97 SELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTS 176 (419)
Q Consensus 97 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 176 (419)
.+|.+. +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+....+.+|.++++|+.+++++|+++......|. ..+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 456664 7999999876 664556678774 799999986 66656677999999999999999998866566666 589
Q ss_pred ccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEEcCC
Q 014726 177 LQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGD 256 (419)
Q Consensus 177 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 256 (419)
|+.+.+..+ +...-...|.++++|+.+++..+ ++......|.. .+|+.+.+. +.++......|.++++|+.+.+.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 999999854 66566678999999999999875 55455566776 789999995 456656678999999999999988
Q ss_pred CCCC-----CCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcC
Q 014726 257 LSAE-----DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (419)
Q Consensus 257 n~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 331 (419)
+... ......|.++++|+.+++.+ .++.....+|..+++|+.+.|..+ ++.....+|.++ +|+.+++.+|.+
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 7654 34567889999999999995 477667778999999999999665 665667789998 999999999988
Q ss_pred cccCCCCCC-C-CCccEEEcccCCCc
Q 014726 332 SGELPVNII-A-PNLIALDVSYNPLS 355 (419)
Q Consensus 332 ~~~~p~~~~-~-~~L~~L~Ls~N~l~ 355 (419)
....+..+. + .+++.|.+..+.+.
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cccccccccCCCCCccEEEeCHHHHH
Confidence 743333332 3 57888988877654
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=3.4e-17 Score=142.17 Aligned_cols=137 Identities=23% Similarity=0.315 Sum_probs=80.9
Q ss_pred hhCCCCCCEEECcCCcCCccCCc------cccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhcc
Q 014726 99 LFMLRKLMDLNLGQNVLNGSIPA------EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELG 172 (419)
Q Consensus 99 l~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 172 (419)
+.....++.++++.+.+++.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34444555555555555555444 56666666666666666663 44 5666666666666666665 4455555
Q ss_pred CCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCc-hhhcCccccceeeccCCcCcccch
Q 014726 173 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIP 240 (419)
Q Consensus 173 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 240 (419)
.+++|++|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 55666666666666664 33 45566666666666666664222 355666666666666666654433
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=3.5e-15 Score=126.79 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=79.8
Q ss_pred hhCCCCCCEEECcCCcCCccCCccccCCC-CCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCc
Q 014726 99 LFMLRKLMDLNLGQNVLNGSIPAEIGQLS-NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSL 177 (419)
Q Consensus 99 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 177 (419)
+..+++|++|++++|.++ .++. +..+. +|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445566677777777666 3443 33333 677777777766643 456666677777777776664444444666666
Q ss_pred cceecccccccccCCh--hhcCCCCCcEEEccCCcCCCCCch----hhcCccccceeeccCCcCc
Q 014726 178 QQLYIDSSGVTGSIPQ--EFANLKSLRILWASDNLFTGKIPE----FFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 178 ~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~ 236 (419)
++|++++|.+. .+|. .+..+++|+.|++++|.++. .+. .+..+++|+.|+++.|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777666664 3443 56666666666666666653 233 3556666666666666543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1.1e-16 Score=138.86 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=53.3
Q ss_pred ccCCCCCcEeecccCcCCCCCCC------CcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhc
Q 014726 123 IGQLSNMQYLSLGINNFTGRVPT------ELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFA 196 (419)
Q Consensus 123 l~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 196 (419)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 33445566666666666555544 45555555555555555543 33 4444555555555555554 3444444
Q ss_pred CCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCc
Q 014726 197 NLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 197 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 236 (419)
.+++|+.|++++|++++ ++ .+..+++|++|++++|.++
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC
Confidence 44445555555444443 22 3344444444444444443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1e-14 Score=123.94 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=88.7
Q ss_pred cccCCCCCcEeecccCcCCCCCCCCcccC-CccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCC
Q 014726 122 EIGQLSNMQYLSLGINNFTGRVPTELGNL-TKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKS 200 (419)
Q Consensus 122 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 200 (419)
.+.++.+|++|++++|.++ .+|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3566788888888888887 4454 4444 4888888888888754 46777888888888888887554455577788
Q ss_pred CcEEEccCCcCCCCCch--hhcCccccceeeccCCcCcccchh----hcccCCCCCeEEcCCC
Q 014726 201 LRILWASDNLFTGKIPE--FFGTLTELADLRLQGTLLEGPIPR----SFRALNKLEDLRIGDL 257 (419)
Q Consensus 201 L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n 257 (419)
|++|++++|.+. .++. .+..+++|+.|++++|.++. +|. .+..+++|+.|++++|
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence 888888888775 3443 56677777777777777663 333 2445555555554443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.6e-13 Score=115.72 Aligned_cols=87 Identities=29% Similarity=0.333 Sum_probs=44.4
Q ss_pred CCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEc
Q 014726 127 SNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWA 206 (419)
Q Consensus 127 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 206 (419)
++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34555555555555444444555555555555555555444444455555555555555555433344555555555555
Q ss_pred cCCcCCC
Q 014726 207 SDNLFTG 213 (419)
Q Consensus 207 ~~n~l~~ 213 (419)
++|.+..
T Consensus 110 ~~N~~~c 116 (170)
T 3g39_A 110 LNNPWDC 116 (170)
T ss_dssp CSSCBCT
T ss_pred CCCCCCC
Confidence 5555543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=3.2e-13 Score=114.34 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=50.2
Q ss_pred EEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecccc
Q 014726 82 THLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (419)
Q Consensus 82 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (419)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555542 4444332 45555555555555444445555555555555555555333333444555555555555
Q ss_pred ccCCCCChhccCCCCccceeccccccc
Q 014726 162 NFFGPLPKELGKLTSLQQLYIDSSGVT 188 (419)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~L~~n~l~ 188 (419)
++++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 554333333444444444444444443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=4.4e-13 Score=113.07 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=89.0
Q ss_pred CcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccC
Q 014726 129 MQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASD 208 (419)
Q Consensus 129 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 208 (419)
.+++++++|.++ .+|..+. ++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567888888887 5666553 7889999999999888888888999999999999999876666778889999999999
Q ss_pred CcCCCCCchhhcCccccceeeccCCcCccc
Q 014726 209 NLFTGKIPEFFGTLTELADLRLQGTLLEGP 238 (419)
Q Consensus 209 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 238 (419)
|++++..+..+..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999877777788888899999988887744
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=7.5e-13 Score=112.04 Aligned_cols=106 Identities=29% Similarity=0.317 Sum_probs=86.5
Q ss_pred CEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceecccc
Q 014726 106 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 185 (419)
Q Consensus 106 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 185 (419)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67889988886 6777654 78899999999998777888888899999999999888766666788888888888888
Q ss_pred cccccCChhhcCCCCCcEEEccCCcCCCC
Q 014726 186 GVTGSIPQEFANLKSLRILWASDNLFTGK 214 (419)
Q Consensus 186 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 214 (419)
++++..+..|..+++|+.|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88865555688888888888888887743
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=4.2e-14 Score=134.58 Aligned_cols=135 Identities=14% Similarity=0.076 Sum_probs=69.3
Q ss_pred CCCCCEEECcCCcCCccCCccc----c-CCCCCcEeecccCcCCCCCCCCc-ccCCccceeeccccccCCCCChhc----
Q 014726 102 LRKLMDLNLGQNVLNGSIPAEI----G-QLSNMQYLSLGINNFTGRVPTEL-GNLTKLISLSFSSNNFFGPLPKEL---- 171 (419)
Q Consensus 102 l~~L~~L~L~~n~l~~~~p~~l----~-~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l---- 171 (419)
++.|++|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567788888887764332222 2 22577777777777653222222 234566777777776653322222
Q ss_pred -cCCCCccceecccccccc----cCChhhcCCCCCcEEEccCCcCCCCC----chhhcCccccceeeccCCcCc
Q 014726 172 -GKLTSLQQLYIDSSGVTG----SIPQEFANLKSLRILWASDNLFTGKI----PEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 172 -~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~ 236 (419)
...++|++|++++|.++. .++..+...++|++|+|++|.+++.. ...+...++|++|++++|.++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 133556666666665542 12233344555555555555554321 223333444555555555444
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.7e-13 Score=130.35 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=56.5
Q ss_pred CCCcEEEccCCcCCCCCchhh-cCccccceeeccCCcCcccchhhc-----ccCCCCCeEEcCCCCCCCCC----chhhc
Q 014726 199 KSLRILWASDNLFTGKIPEFF-GTLTELADLRLQGTLLEGPIPRSF-----RALNKLEDLRIGDLSAEDST----LDFLE 268 (419)
Q Consensus 199 ~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~----~~~~~ 268 (419)
++|+.|+|++|.++......+ ..+++|++|++++|.++......+ ...++|++|+|++|.+.... ...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555555442211111 223445555555555543222222 12344444444444433221 11223
Q ss_pred CCCCCCEEeccCCcCccc----CCccccCCCCCCEEEeecCccccc----CCccccCCCCCcEEEccCCcCc
Q 014726 269 SQKSLSILSLRNCRVSGK----IPDQLGTFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNLS 332 (419)
Q Consensus 269 ~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 332 (419)
..++|++|+|++|.+++. +...+...++|++|+|++|.+++. +...+...++|++|+|++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 444555555555554432 123334444555555555555432 1222233345555555555554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=9.3e-12 Score=117.43 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=80.9
Q ss_pred EEeecC-cccccCChhhhCCCCCCEEECcC-CcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecccc
Q 014726 84 LKIYAL-DIMGELPSELFMLRKLMDLNLGQ-NVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 161 (419)
Q Consensus 84 L~l~~~-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 161 (419)
++.+++ ++. .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 355555 554 4777 88888899999985 8888666677888889999999999888877888888888889999888
Q ss_pred ccCCCCChhccCCCCccceecccccccc
Q 014726 162 NFFGPLPKELGKLTSLQQLYIDSSGVTG 189 (419)
Q Consensus 162 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 189 (419)
++++..+..|..++ |+.|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88866665565555 8888888887763
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=2.7e-11 Score=114.28 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=90.4
Q ss_pred EEECcCC-cCCccCCccccCCCCCcEeeccc-CcCCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccc
Q 014726 107 DLNLGQN-VLNGSIPAEIGQLSNMQYLSLGI-NNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (419)
Q Consensus 107 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 184 (419)
.++.+++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688887 887 5888 99999999999996 999977778899999999999999999988888899999999999999
Q ss_pred ccccccCChhhcCCCCCcEEEccCCcCCCC
Q 014726 185 SGVTGSIPQEFANLKSLRILWASDNLFTGK 214 (419)
Q Consensus 185 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 214 (419)
|++++..+..+..++ |+.|++.+|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999966556666655 99999999988744
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.16 E-value=1.6e-09 Score=103.97 Aligned_cols=138 Identities=12% Similarity=0.046 Sum_probs=79.3
Q ss_pred cccceeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEe
Q 014726 223 TELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDL 302 (419)
Q Consensus 223 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 302 (419)
.+|+.+.+... .+......+..+..++.+.+..+. .......+..+..++.+......+ ....+..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceee---cccccccccccccccc
Confidence 34555544332 122233456677788888876542 222444566677777776665432 2335666777887777
Q ss_pred ecCcccccCCccccCCCCCcEEEccCCcCcccCCC-CC-CCCCccEEEcccCCCcccCCccccc-CCcee
Q 014726 303 SFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV-NI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLSM 369 (419)
Q Consensus 303 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~~ 369 (419)
..+ +......+|.++.+|+.+++.++ ++ .++. .+ .+.+|+.+++..+ ++..-...|.. .+|+-
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 654 44344556777778888877644 44 3432 22 3577888877665 55333445555 66653
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.2e-09 Score=102.90 Aligned_cols=265 Identities=12% Similarity=0.053 Sum_probs=144.2
Q ss_pred ChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccccccCCCCChh-----
Q 014726 96 PSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKE----- 170 (419)
Q Consensus 96 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~----- 170 (419)
..+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +......+
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 345777788888888643 55344556888888888888654 44344557777777777766543 22222223
Q ss_pred -----------------ccCCCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCC
Q 014726 171 -----------------LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT 233 (419)
Q Consensus 171 -----------------l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 233 (419)
|.++.+|+.+.+..+. .......|.++.+|+.+.+..+ +.......+..+..|+.+.+..+
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 3344444444443321 1122233444444444444332 22122233444444444444333
Q ss_pred cCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCc
Q 014726 234 LLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPT 313 (419)
Q Consensus 234 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 313 (419)
... +........+|+.+.+... ........+..+..++.+.+..+... .....|..+..++.+....+.+. ..
T Consensus 219 ~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~ 291 (394)
T 4fs7_A 219 LYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EK 291 (394)
T ss_dssp CCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TT
T ss_pred ceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cc
Confidence 211 1112222344555554322 12223345566777777777766443 55556777778887777665443 24
Q ss_pred cccCCCCCcEEEccCCcCcccCCCC-C-CCCCccEEEcccCCCcccCCccccc-CCceeEeecCC
Q 014726 314 SLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPLSGNLPRNFAK-GGLSMNVIGSS 375 (419)
Q Consensus 314 ~~~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~~~~~~n~ 375 (419)
.|..+.+|+.+.+..+ +. .++.. + .+.+|+.+++.++ ++..-...|.. ..|+-.....+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 5778899999999765 44 44433 3 3689999999754 66444556666 77764433333
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=8.5e-11 Score=110.92 Aligned_cols=179 Identities=13% Similarity=0.131 Sum_probs=94.4
Q ss_pred cceeEEEEeecCcccc-c-------CChhhhCCCCCCEEECcCCcCC---------ccCCccccCCCCCcEeecccCcCC
Q 014726 78 SCHITHLKIYALDIMG-E-------LPSELFMLRKLMDLNLGQNVLN---------GSIPAEIGQLSNMQYLSLGINNFT 140 (419)
Q Consensus 78 ~~~v~~L~l~~~~l~~-~-------~p~~l~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~ 140 (419)
.++|+.|.+......| . +..++..+++|+.|.+...... +.+...+..+++|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467888877655442 2 1234567889999988664321 123344566778888888776311
Q ss_pred CCCCCCcccCCccceeeccccccCCCCChhcc--CCCCccceeccc--cccccc-----CChhh--cCCCCCcEEEccCC
Q 014726 141 GRVPTELGNLTKLISLSFSSNNFFGPLPKELG--KLTSLQQLYIDS--SGVTGS-----IPQEF--ANLKSLRILWASDN 209 (419)
Q Consensus 141 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n 209 (419)
.++. + .+++|++|++..+.+.......+. .+++|++|+|+. +...+. +...+ ..+++|+.|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2232 3 367788888877665432222332 567777777642 111111 11112 23566777777666
Q ss_pred cCCCCCchhh---cCccccceeeccCCcCccc----chhhcccCCCCCeEEcCCCCC
Q 014726 210 LFTGKIPEFF---GTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSA 259 (419)
Q Consensus 210 ~l~~~~~~~l---~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~ 259 (419)
.+.+..+..+ ..+++|++|+++.|.+.+. ++..+.++++|+.|+++.|.+
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 6653322222 2355666666666665532 222223344455555544443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.04 E-value=5.6e-09 Score=100.10 Aligned_cols=110 Identities=11% Similarity=0.168 Sum_probs=77.4
Q ss_pred hhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCcccccCCccccCCC
Q 014726 240 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 319 (419)
Q Consensus 240 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 319 (419)
...|.++.+|+.+.+.... .......|..+..|+.+.+.. .++.....+|.++.+|+.++|..+ ++.....+|.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 3456777888888886532 223456677888899988864 455455667888889999998765 5545566788888
Q ss_pred CCcEEEccCCcCcccCCCC-C-CCCCccEEEcccCCC
Q 014726 320 TLQYLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPL 354 (419)
Q Consensus 320 ~L~~L~L~~N~l~~~~p~~-~-~~~~L~~L~Ls~N~l 354 (419)
+|+.+.+..+ ++ .+... + .+.+|+.+++.++..
T Consensus 335 ~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 335 QLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence 9999988654 44 44433 2 368899999888764
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=4.2e-10 Score=106.15 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=28.0
Q ss_pred hhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcc--cCCCCCeEEc
Q 014726 193 QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFR--ALNKLEDLRI 254 (419)
Q Consensus 193 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L 254 (419)
..+..+|+|+.|++++|.-. .++. + .+++|++|++..+.+.......+. .+++|++|+|
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 44455566666666655211 1111 2 245566666665554433222332 4555555555
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.91 E-value=1.4e-07 Score=90.27 Aligned_cols=266 Identities=12% Similarity=0.109 Sum_probs=154.6
Q ss_pred hhhCCC-CCCEEECcCCcCCccCCccccCCCCCcEeecccCc---CCCCCCCCcccCCccceeeccccccCCCCChhccC
Q 014726 98 ELFMLR-KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN---FTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 173 (419)
Q Consensus 98 ~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 173 (419)
+|.++. .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++......|..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 455553 4777777643 443445667778888888777653 44344556777777777776544 33344456677
Q ss_pred CCCccceecccccccccCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccceeeccCCcCcccchhhcccCCCCCeEE
Q 014726 174 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLR 253 (419)
Q Consensus 174 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 253 (419)
+.+|+.+.+..+ +.......|..+.+|+.+.+..+ +...-...|. ...|+.+.+..+... .....+..+.+++...
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEE
T ss_pred hcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceec
Confidence 777777777543 23233445666677777766543 2212222332 234555555433211 1222333333333332
Q ss_pred cCCCC------------------------------------CCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCC
Q 014726 254 IGDLS------------------------------------AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKL 297 (419)
Q Consensus 254 L~~n~------------------------------------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 297 (419)
..... ........|..+..|+.+.+.++... ....+|..+++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L 290 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL 290 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCccccccccc
Confidence 22110 11112345677888888888766443 566678888999
Q ss_pred CEEEeecCcccccCCccccCCCCCcEEEccCCcCcccCCCC-C-CCCCccEEEcccCCCcccCCccccc-CCce-eEeec
Q 014726 298 QLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIG 373 (419)
Q Consensus 298 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~L~Ls~N~l~~~~p~~~~~-~~l~-~~~~~ 373 (419)
+.+.+. +.+.......|.++.+|+.+.+..+ ++ .+... + .+.+|+.+.+..+ ++..-...|.. .+|+ +.+.+
T Consensus 291 ~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 291 QDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred ccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 999986 4455455667888999999999765 44 34333 3 3689999999754 55333345655 7776 44444
Q ss_pred C
Q 014726 374 S 374 (419)
Q Consensus 374 n 374 (419)
+
T Consensus 367 ~ 367 (394)
T 4gt6_A 367 S 367 (394)
T ss_dssp C
T ss_pred c
Confidence 3
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.64 E-value=2.9e-06 Score=80.62 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=64.7
Q ss_pred eeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeecc
Q 014726 80 HITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 159 (419)
Q Consensus 80 ~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 159 (419)
+++.+.+.. +++..-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +......+|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 466666543 233333456778888888888644 543344557666 5777766543 43233345554 367777776
Q ss_pred ccccCCCCChhccCCCCccceecccccccccCChhhcCCCCCcEEEccCC
Q 014726 160 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 209 (419)
Q Consensus 160 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 209 (419)
.+- .......|.+. +++.+.+..+ ++......+....+++.+.+..+
T Consensus 122 ~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 122 GAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp TTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred Ccc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccc
Confidence 542 22223334332 4555444332 22233345566666776666543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=1.8e-08 Score=85.73 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=8.7
Q ss_pred hcCCCCCcEEEccCC-cCC
Q 014726 195 FANLKSLRILWASDN-LFT 212 (419)
Q Consensus 195 ~~~l~~L~~L~l~~n-~l~ 212 (419)
+...++|++|+|++| .+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC
T ss_pred HhcCCCCCEEEecCCCCCC
Confidence 344455555555554 443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=5.2e-08 Score=82.86 Aligned_cols=67 Identities=6% Similarity=0.121 Sum_probs=34.6
Q ss_pred hccCCCCccceecccc-ccccc----CChhhcCCCCCcEEEccCCcCCCCC----chhhcCccccceeeccCCcCc
Q 014726 170 ELGKLTSLQQLYIDSS-GVTGS----IPQEFANLKSLRILWASDNLFTGKI----PEFFGTLTELADLRLQGTLLE 236 (419)
Q Consensus 170 ~l~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~ 236 (419)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+.... ...+...+.|++|++++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3455666777777776 66522 2334445566666666666655321 122233344555555555444
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.35 E-value=2e-05 Score=74.72 Aligned_cols=263 Identities=10% Similarity=0.023 Sum_probs=164.1
Q ss_pred ceeEEEEeecCcccccCChhhhCCCCCCEEECcCCcCCccCCccccCCCCCcEeecccCcCCCCCCCCcccCCccceeec
Q 014726 79 CHITHLKIYALDIMGELPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 158 (419)
Q Consensus 79 ~~v~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 158 (419)
.+++.+.+..+ +...-..+|.++ +|+.+.+..+ ++.....+|... +|+.+.+..+- ......+|.+. +|+.+.+
T Consensus 69 ~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~ 142 (379)
T 4h09_A 69 YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGNYIFYNS-SVKRIVI 142 (379)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEECTTTTTTC-CCCEEEE
T ss_pred CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-ccccccccccc-eeeeeec
Confidence 36888888543 433333456666 6777777543 442334456554 79999987653 32334455544 5666666
Q ss_pred cccccCCCCChhccCCCCccceecccccccc------------cCChhhcCCCCCcEEEccCCcCCCCCchhhcCccccc
Q 014726 159 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTG------------SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA 226 (419)
Q Consensus 159 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 226 (419)
..+ ++......|..+.+++.+.+..+.... .....+.....+..+.+.... .......+.....|+
T Consensus 143 ~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~ 220 (379)
T 4h09_A 143 PKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLK 220 (379)
T ss_dssp CTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCS
T ss_pred cce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecccccccccc
Confidence 543 333445566777777777665433221 112223444556665554332 223344566677888
Q ss_pred eeeccCCcCcccchhhcccCCCCCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCcCcccCCccccCCCCCCEEEeecCc
Q 014726 227 DLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK 306 (419)
Q Consensus 227 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 306 (419)
.+.+..+ +.......+.++.+|+.+.+..+ +.......+..+.+|+.+.+..+ +.......|..+++|+.+.+.++.
T Consensus 221 ~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 221 KITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA 297 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT
T ss_pred eeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccc
Confidence 8887654 33344557778888888888654 44445567778888999988754 544556678888999999998888
Q ss_pred ccccCCccccCCCCCcEEEccCCcCcccCCCC-C-CCCCccEEEcccCCCc
Q 014726 307 LTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN-I-IAPNLIALDVSYNPLS 355 (419)
Q Consensus 307 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~L~~L~Ls~N~l~ 355 (419)
++.....+|.++.+|+.+.|..+ ++ .+... + .+.+|+.+.+..+ ++
T Consensus 298 i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~ 345 (379)
T 4h09_A 298 IETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-IT 345 (379)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CC
T ss_pred cceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cC
Confidence 87666778888999999998755 44 44433 3 3678888887654 44
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=8e-08 Score=86.13 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCCCccceecccccccc--cCChhhcCCCCCcEEEccCCcCCCCCchhhcCcc--ccceeeccCCcCcc
Q 014726 173 KLTSLQQLYIDSSGVTG--SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT--ELADLRLQGTLLEG 237 (419)
Q Consensus 173 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~ 237 (419)
++++|+.|+|++|++++ .++..+..+++|+.|+|++|++.+. ..+..+. +|++|++.+|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 34555555555555554 2334444555555666655555543 1122222 55556665555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=3.6e-07 Score=81.90 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=70.5
Q ss_pred hCCCCCCE--EECcCCcCC---ccCCccccCCCCCcEeecccCcCCC--CCCCCcccCCccceeeccccccCCCCChhcc
Q 014726 100 FMLRKLMD--LNLGQNVLN---GSIPAEIGQLSNMQYLSLGINNFTG--RVPTELGNLTKLISLSFSSNNFFGPLPKELG 172 (419)
Q Consensus 100 ~~l~~L~~--L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 172 (419)
...+.|+. ++++.|... ..+.....++++|++|+|++|.+++ .+|..+..+++|+.|+|++|++.+. ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh
Confidence 33344444 566666432 1122222567888999999998886 4456667888899999999988754 2333
Q ss_pred CCC--CccceecccccccccCC-------hhhcCCCCCcEEEc
Q 014726 173 KLT--SLQQLYIDSSGVTGSIP-------QEFANLKSLRILWA 206 (419)
Q Consensus 173 ~l~--~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~l 206 (419)
.+. +|++|++++|.+.+.+| ..+..+++|+.||=
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 344 88999999999887655 24677889988863
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=1.2e-06 Score=72.84 Aligned_cols=81 Identities=15% Similarity=0.300 Sum_probs=32.3
Q ss_pred CCeEEcCCCCCCCCCchhhcCCCCCCEEeccCCc-CcccCCccccCC----CCCCEEEeecCc-ccccCCccccCCCCCc
Q 014726 249 LEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCR-VSGKIPDQLGTF----AKLQLLDLSFNK-LTGQIPTSLQDLSTLQ 322 (419)
Q Consensus 249 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L~ 322 (419)
|++|+++++.+++.....+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++.--..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 3444444443333333333444444444444442 332222222222 234555554442 4433333333444444
Q ss_pred EEEccCC
Q 014726 323 YLYLGNN 329 (419)
Q Consensus 323 ~L~L~~N 329 (419)
+|++++|
T Consensus 143 ~L~L~~c 149 (176)
T 3e4g_A 143 YLFLSDL 149 (176)
T ss_dssp EEEEESC
T ss_pred EEECCCC
Confidence 4444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=3.2e-06 Score=70.33 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=12.5
Q ss_pred ccceecccccccccCChhhcCCCCCcEEEccCC
Q 014726 177 LQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 209 (419)
Q Consensus 177 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 209 (419)
|++|+++++.++..--..+..+++|+.|+|++|
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 444444444433222222333344444444433
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00014 Score=61.58 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=6.4
Q ss_pred ccccceeeccCCcCc
Q 014726 222 LTELADLRLQGTLLE 236 (419)
Q Consensus 222 l~~L~~L~l~~n~l~ 236 (419)
-+.|+.|+|++|.+.
T Consensus 69 N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 69 SKHIEKFSLANTAIS 83 (197)
T ss_dssp CSCCCEEECTTSCCB
T ss_pred CCCcCEEEccCCCCC
Confidence 334444444444443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.18 E-value=0.00046 Score=58.42 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=39.5
Q ss_pred CCccceecccc-cccc----cCChhhcCCCCCcEEEccCCcCCCC----CchhhcCccccceeeccCCcCccc----chh
Q 014726 175 TSLQQLYIDSS-GVTG----SIPQEFANLKSLRILWASDNLFTGK----IPEFFGTLTELADLRLQGTLLEGP----IPR 241 (419)
Q Consensus 175 ~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~ 241 (419)
+.|++|+|+++ .+.. .+.+.+..-..|+.|+|++|++.+. +.+.+..-+.|++|+|+.|.+... +..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44555555543 3331 1233444555666666666666532 223333445566666666665532 223
Q ss_pred hcccCCCCCeEEcCC
Q 014726 242 SFRALNKLEDLRIGD 256 (419)
Q Consensus 242 ~~~~l~~L~~L~L~~ 256 (419)
.+..-+.|++|+|++
T Consensus 121 aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 121 STLVTQSIVEFKADN 135 (197)
T ss_dssp HTTTTCCCSEEECCC
T ss_pred HHhhCCceeEEECCC
Confidence 334444455555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.81 E-value=0.0019 Score=50.82 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=27.6
Q ss_pred EEeccCCcCc-ccCCccccCCCCCCEEEeecCcccccCCccccCCCCCcEEEccCCcC
Q 014726 275 ILSLRNCRVS-GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 331 (419)
Q Consensus 275 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 331 (419)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 23443322 3456666666666533334445555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.34 E-value=0.0068 Score=47.62 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=14.8
Q ss_pred CCEEECcCCcCCccCCccccCCCCCcEeecccCcC
Q 014726 105 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNF 139 (419)
Q Consensus 105 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 139 (419)
|++|+|++|.|+...+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444432233344444444444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.32 E-value=32 Score=24.86 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=22.3
Q ss_pred CccccCCCCCcEeecccCcCCCCCCCCcccCCccceeeccc
Q 014726 120 PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 160 (419)
Q Consensus 120 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 160 (419)
...|.++..|+.+.|-.+ ++.+...+|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344666666666666543 3324445566666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.31 E-value=28 Score=25.18 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=25.6
Q ss_pred CCCCCCCCcccCCccceeeccccccCCCCChhccCCCCccceeccc
Q 014726 139 FTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 184 (419)
Q Consensus 139 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 184 (419)
++.+-..+|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34344456666666766666543 3434455566666666666543
Done!