BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014728
         (419 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha OS=Homo sapiens GN=SCN2A
            PE=1 SV=3
          Length = 2005

 Score = 36.6 bits (83), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 261  KKDDGNNATIDKKYRGAITVYEKFEGPSMVYKKNEGIDAVDEKTKGNATVDRKDKGTTPT 320
            K+++ +   I + YR  + + +K +  S +YKK++G +      K +  +D+ ++ +TP 
Sbjct: 1903 KQEEVSAIIIQRAYRRYL-LKQKVKKVSSIYKKDKGKECDGTPIKEDTLIDKLNENSTPE 1961

Query: 321  DAKSTGSATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRR 364
                T S TS   Y    + + + +  +  + +  G+D ++ ++
Sbjct: 1962 KTDMTPSTTSPPSYDSVTKPEKEKFEKDKSEKEDKGKDIRESKK 2005


>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus
            GN=Scn2a PE=1 SV=1
          Length = 2005

 Score = 35.0 bits (79), Expect = 0.97,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 51/104 (49%), Gaps = 1/104 (0%)

Query: 261  KKDDGNNATIDKKYRGAITVYEKFEGPSMVYKKNEGIDAVDEKTKGNATVDRKDKGTTPT 320
            K+++ +   I + YR  + + +K +  S +YKK++G +      K +   D+ ++ +TP 
Sbjct: 1903 KQEEVSAIVIQRAYRRYL-LKQKVKKVSSIYKKDKGKEDEGTPIKEDIITDKLNENSTPE 1961

Query: 321  DAKSTGSATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRR 364
                T S TS   Y    + + + +  +  + +  G+D ++ ++
Sbjct: 1962 KTDVTPSTTSPPSYDSVTKPEKEKFEKDKSEKEDKGKDIRESKK 2005


>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
           OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
          Length = 153

 Score = 32.3 bits (72), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 17/119 (14%)

Query: 138 EKLKRKKKIHRNDIGSKQTEEGTYVMKIKLCCDSCNQKLRK-IMKIKGLETVNMDVQEDL 196
            K+K++K++        QT E    +K+K+ C+ C +K+R+ +  +KG+ +V ++ +   
Sbjct: 17  HKIKKRKQL--------QTVE----IKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHK 64

Query: 197 VKVKGTVDITEVRSYIKDELKKDVVII--FPAEVVIPTKKDDGAAYKKEKDAGTTRKKD 253
           V V G VD  +V + +     K V +    P +VV          Y K+  +G  R+ D
Sbjct: 65  VTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVV--AHPYAAGVYDKKAPSGYVRRVD 121


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.130    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,874,595
Number of Sequences: 539616
Number of extensions: 7278073
Number of successful extensions: 22182
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 288
Number of HSP's that attempted gapping in prelim test: 21426
Number of HSP's gapped (non-prelim): 827
length of query: 419
length of database: 191,569,459
effective HSP length: 120
effective length of query: 299
effective length of database: 126,815,539
effective search space: 37917846161
effective search space used: 37917846161
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)