Query 014728
Match_columns 419
No_of_seqs 313 out of 1808
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 07:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10671 copA copper exporting 99.3 7.1E-11 1.5E-15 131.5 16.5 158 54-221 2-162 (834)
2 PF00403 HMA: Heavy-metal-asso 99.1 2E-10 4.4E-15 87.6 8.2 57 162-219 1-62 (62)
3 KOG1603 Copper chaperone [Inor 99.1 3.1E-10 6.7E-15 90.9 8.6 65 159-223 5-70 (73)
4 KOG0207 Cation transport ATPas 99.0 2.3E-09 4.9E-14 118.7 13.4 179 62-297 2-187 (951)
5 KOG0207 Cation transport ATPas 99.0 5.1E-09 1.1E-13 116.0 15.9 176 13-220 12-211 (951)
6 PF00403 HMA: Heavy-metal-asso 98.9 3.8E-09 8.3E-14 80.6 7.6 57 58-115 1-61 (62)
7 COG2608 CopZ Copper chaperone 98.9 1.1E-08 2.5E-13 81.6 8.7 63 160-223 3-70 (71)
8 KOG1603 Copper chaperone [Inor 98.7 5.4E-08 1.2E-12 77.9 7.7 66 52-117 2-67 (73)
9 COG2608 CopZ Copper chaperone 98.7 5.8E-08 1.3E-12 77.5 7.7 63 55-118 2-68 (71)
10 KOG4656 Copper chaperone for s 98.3 1.6E-06 3.5E-11 82.7 7.1 70 53-123 5-74 (247)
11 KOG4656 Copper chaperone for s 98.2 3.3E-06 7.3E-11 80.6 7.6 64 159-223 7-71 (247)
12 PRK10671 copA copper exporting 98.1 1.4E-05 3.1E-10 89.5 9.9 126 159-292 3-135 (834)
13 PLN02957 copper, zinc superoxi 97.6 0.00025 5.4E-09 68.8 9.5 64 159-223 6-70 (238)
14 COG2217 ZntA Cation transport 97.5 0.00019 4.1E-09 79.8 7.6 59 160-220 3-67 (713)
15 PLN02957 copper, zinc superoxi 97.2 0.0012 2.7E-08 64.1 8.4 67 54-121 5-71 (238)
16 TIGR00003 copper ion binding p 97.0 0.0057 1.2E-07 42.5 8.0 60 160-220 3-67 (68)
17 COG2217 ZntA Cation transport 96.6 0.0039 8.5E-08 69.5 7.1 61 55-117 2-67 (713)
18 TIGR00003 copper ion binding p 95.1 0.098 2.1E-06 36.1 6.3 43 56-98 3-46 (68)
19 PRK11033 zntA zinc/cadmium/mer 95.0 0.061 1.3E-06 60.3 7.5 60 159-220 53-116 (741)
20 PRK11033 zntA zinc/cadmium/mer 88.7 0.77 1.7E-05 51.6 6.1 45 54-98 52-97 (741)
21 TIGR02052 MerP mercuric transp 85.5 7.9 0.00017 29.6 8.5 62 160-222 24-90 (92)
22 PRK13748 putative mercuric red 66.7 22 0.00048 38.1 8.1 61 162-223 3-67 (561)
23 cd00371 HMA Heavy-metal-associ 65.8 28 0.0006 21.2 6.8 35 166-200 6-41 (63)
24 TIGR02052 MerP mercuric transp 56.8 45 0.00099 25.3 6.3 42 56-97 24-66 (92)
25 PF09510 Rtt102p: Rtt102p-like 48.2 12 0.00026 33.8 2.0 31 369-399 1-31 (130)
26 PF01883 DUF59: Domain of unkn 45.0 35 0.00076 26.6 3.9 33 55-87 34-72 (72)
27 PF01883 DUF59: Domain of unkn 33.4 76 0.0016 24.6 4.2 32 159-190 34-72 (72)
28 PRK11152 ilvM acetolactate syn 30.0 1.5E+02 0.0032 24.3 5.5 62 6-87 14-75 (76)
29 PRK13748 putative mercuric red 29.8 1E+02 0.0023 33.0 5.8 40 59-98 4-44 (561)
30 COG2177 FtsX Cell division pro 29.0 2.6E+02 0.0056 28.6 8.1 90 56-191 62-152 (297)
31 COG2177 FtsX Cell division pro 28.7 2.3E+02 0.005 28.9 7.7 48 159-219 61-109 (297)
32 PRK14054 methionine sulfoxide 26.7 1E+02 0.0022 29.1 4.5 26 171-196 11-37 (172)
33 PF01206 TusA: Sulfurtransfera 24.0 2E+02 0.0043 22.1 5.1 51 162-220 2-54 (70)
34 PRK13562 acetolactate synthase 22.3 3.4E+02 0.0073 22.9 6.3 63 6-86 13-75 (84)
35 cd04888 ACT_PheB-BS C-terminal 21.7 3.5E+02 0.0077 20.4 6.1 33 55-87 41-74 (76)
36 PF13291 ACT_4: ACT domain; PD 20.2 2.4E+02 0.0052 22.0 4.9 33 54-86 47-79 (80)
No 1
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.27 E-value=7.1e-11 Score=131.48 Aligned_cols=158 Identities=11% Similarity=0.168 Sum_probs=111.6
Q ss_pred ceEEEEEE-cccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEeecchhhHHHHHHHhhcccccccccchhhhhhccc
Q 014728 54 DQLVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPLTQMAAKRVD 132 (419)
Q Consensus 54 ~~~vvlkV-gM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g~vDpe~LveaL~~~~Gk~veivs~~p~~~~~~~~ 132 (419)
+++++|.| +|+|++|+.+|+++|.+++||..+.+++. +..|.+..++..+.+.++. .||.+++..+...+.... .
T Consensus 2 ~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~-~Gy~~~~~~~~~~~~~~~-~ 77 (834)
T PRK10671 2 SQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQ-AGYDASVSHPKAKPLTES-S 77 (834)
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHh-cCCccccccccccccccc-c
Confidence 35788999 69999999999999999999999999995 4556555677888888876 789887654221110000 0
Q ss_pred cchhHHHHHhhhccCcCCCCCCCCcceEEEEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEeccCHHHHHH
Q 014728 133 NQISEEKLKRKKKIHRNDIGSKQTEEGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRS 210 (419)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~k~~~~tv~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG~vdp~~Llk 210 (419)
....+.+ ...+. . +........++.+.+ ||+|.+|+..|++. ..++||.++.+|+.++++.|.+..++..+..
T Consensus 78 ~~~~~~~--~~~~~-~--~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~ 152 (834)
T PRK10671 78 IPSEALT--AASEE-L--PAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQ 152 (834)
T ss_pred cCchhhh--hhhhh-c--cccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHH
Confidence 0000000 00000 0 000000113567889 99999999999999 9999999999999999988876677888888
Q ss_pred HHHHhcCCceE
Q 014728 211 YIKDELKKDVV 221 (419)
Q Consensus 211 ~L~kktGk~ae 221 (419)
.++ .+||.+.
T Consensus 153 ~I~-~~Gy~a~ 162 (834)
T PRK10671 153 AVE-KAGYGAE 162 (834)
T ss_pred HHH-hcCCCcc
Confidence 886 7899773
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.14 E-value=2e-10 Score=87.65 Aligned_cols=57 Identities=23% Similarity=0.494 Sum_probs=51.9
Q ss_pred EEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEec---cCHHHHHHHHHHhcCCc
Q 014728 162 VMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGT---VDITEVRSYIKDELKKD 219 (419)
Q Consensus 162 ~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG~---vdp~~Llk~L~kktGk~ 219 (419)
+|.| ||+|++|+++|+++ .+++||.++.+|+.+++++|++. +++++|.++|+ ++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 5889 99999999999999 99999999999999999999965 44599999997 79984
No 3
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.12 E-value=3.1e-10 Score=90.87 Aligned_cols=65 Identities=31% Similarity=0.613 Sum_probs=59.6
Q ss_pred eEEEEEecCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEeccCHHHHHHHHHHhcCCceEEe
Q 014728 159 GTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 223 (419)
Q Consensus 159 ~tv~LkVGM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG~vdp~~Llk~L~kktGk~aei~ 223 (419)
++.++.+.|||.+|+.+|++. ..++||.++.+|..++++||.|.++|..|++.|++..++++++|
T Consensus 5 ~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 5 KTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred cEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 467888899999999999999 99999999999999999999999999999999985333888777
No 4
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.02 E-value=2.3e-09 Score=118.67 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=140.8
Q ss_pred cccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEee--cchhhHHHHHHHhhcccccccccchhhhhhccccchhHHH
Q 014728 62 IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGM--VDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQISEEK 139 (419)
Q Consensus 62 gM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g~--vDpe~LveaL~~~~Gk~veivs~~p~~~~~~~~~~~~~~~ 139 (419)
+|+|..|+..|+.++.+.+||.++.+++.+++++|.+. ++++.+.+.++. .|+.+.+.....
T Consensus 2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied-~gf~~~~~~~~~--------------- 65 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIED-MGFEASLLSDSE--------------- 65 (951)
T ss_pred CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhc-ccceeeecccCc---------------
Confidence 79999999999999999999999999999999999883 577888888876 566655443211
Q ss_pred HHhhhccCcCCCCCCCCcceEEEEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEE---eccCHHHHHHHHHH
Q 014728 140 LKRKKKIHRNDIGSKQTEEGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK---GTVDITEVRSYIKD 214 (419)
Q Consensus 140 ~~~~~~~~~~~~~~~k~~~~tv~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVt---G~vdp~~Llk~L~k 214 (419)
....+-.+.+ ||+|.+|.+.|++. ++..||.++.|.+...+..|. ....++.+.+.++
T Consensus 66 ----------------~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie- 128 (951)
T KOG0207|consen 66 ----------------ITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE- 128 (951)
T ss_pred ----------------cccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-
Confidence 1112557899 99999999999999 999999999999999999986 3456789999997
Q ss_pred hcCCceEEeccccccCCCCCCCchhhhccCCCCccCCCCccccccCCCCCCchhhHHHHHhhccceecccccCccccccc
Q 014728 215 ELKKDVVIIFPAEVVIPTKKDDGAAYKKEKDAGTTRKKDRDDKATNKKDDGNNATIDKKYRGAITVYEKFEGPSMVYKKN 294 (419)
Q Consensus 215 ktGk~aei~~p~e~vp~~~~~~~~~~~kk~~~g~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (419)
..|+.++++ +-+-. .+. .--.=.-+.+-|++|...|..+++. +.+|+..+.+.--+
T Consensus 129 ~~gf~a~~i---~~~~~-------------~~~----~~i~L~v~g~~c~s~~~~ie~~l~~----l~gV~~~sv~~~t~ 184 (951)
T KOG0207|consen 129 DLGFSAELI---ESVNG-------------NSN----QKIYLDVLGMTCASCVSKIESILER----LRGVKSFSVSLATD 184 (951)
T ss_pred hcCccceeh---hcccC-------------CCC----CcEEEEeecccccchhhhhHHHHhh----ccCeeEEEEeccCC
Confidence 899999665 21100 000 0011134588999999999999998 89999999887665
Q ss_pred cch
Q 014728 295 EGI 297 (419)
Q Consensus 295 ~~~ 297 (419)
.++
T Consensus 185 ~~~ 187 (951)
T KOG0207|consen 185 TAI 187 (951)
T ss_pred ceE
Confidence 544
No 5
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.02 E-value=5.1e-09 Score=115.96 Aligned_cols=176 Identities=18% Similarity=0.262 Sum_probs=134.6
Q ss_pred hhhhhhhhhhhccccccCCCccccCccc----HHHHhhhh-----------cCCCCceEEEEEE-cccChhHHHHHHHHh
Q 014728 13 LDSVLNRVVAEEALELDSPSDSVTNSNS----AQVINKAI-----------SNKVADQLVTFIL-IVHGYSYVNGVELFV 76 (419)
Q Consensus 13 ~~~~L~~~~~~~a~el~s~~~~vt~~~~----~~~i~~~~-----------e~~~~~~~vvlkV-gM~CagCA~KIekaL 76 (419)
.-..+.+..|+..++++.-....+..++ +..|..++ +..+...+-.|.+ +|+|..|.+.|++.|
T Consensus 12 i~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~~~~~~~~~~l~v~GmtC~scv~~i~~~l 91 (951)
T KOG0207|consen 12 IEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSDSEITASKCYLSVNGMTCASCVATIERNL 91 (951)
T ss_pred HHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeecccCccccceeEEEecCceeHHHHHHHHHHh
Confidence 3456778889999999888776655544 33333211 1223344666888 799999999999999
Q ss_pred hcCCCceEEEeecCCceEEEEee---cchhhHHHHHHHhhcccccccccchhhhhhccccchhHHHHHhhhccCcCCCCC
Q 014728 77 KQIEGVKRVKGDSNSIKLEVTGM---VDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQISEEKLKRKKKIHRNDIGS 153 (419)
Q Consensus 77 skL~GV~sV~VDlatkkVtV~g~---vDpe~LveaL~~~~Gk~veivs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (419)
+.++||.++.+.+...++.+.+. ..+..+.+.+++ .|+.++.+....
T Consensus 92 ~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~-~gf~a~~i~~~~----------------------------- 141 (951)
T KOG0207|consen 92 RKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIED-LGFSAELIESVN----------------------------- 141 (951)
T ss_pred hccCCcceEEEEeeccceeEEECCcccCchhHHHHHHh-cCccceehhccc-----------------------------
Confidence 99999999999999999999863 356667777774 666655443210
Q ss_pred CCCcceEEEEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEE---eccCHHHHHHHHHHhcCCce
Q 014728 154 KQTEEGTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK---GTVDITEVRSYIKDELKKDV 220 (419)
Q Consensus 154 ~k~~~~tv~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVt---G~vdp~~Llk~L~kktGk~a 220 (419)
.....+++|.| ||.|++|+.+|++. .+++||.+++++..++++.|. ....|-++++.|. .+|+.+
T Consensus 142 -~~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie-~~~~~~ 211 (951)
T KOG0207|consen 142 -GNSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIE-ETGFEA 211 (951)
T ss_pred -CCCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHH-hhcccc
Confidence 00114678999 99999999999999 999999999999999999996 4567889999996 799988
No 6
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.93 E-value=3.8e-09 Score=80.60 Aligned_cols=57 Identities=32% Similarity=0.237 Sum_probs=49.8
Q ss_pred EEEE-cccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEeecc---hhhHHHHHHHhhcc
Q 014728 58 TFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVD---PWKIQELVEKETKK 115 (419)
Q Consensus 58 vlkV-gM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g~vD---pe~LveaL~~~~Gk 115 (419)
+|.| +|+|++|+++|+++|.+++||.++.+|+.+++++|.+..+ ++++.+.|++ +||
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~-~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK-AGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH-TTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH-hCc
Confidence 5788 7999999999999999999999999999999999998543 4777888876 554
No 7
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.87 E-value=1.1e-08 Score=81.59 Aligned_cols=63 Identities=22% Similarity=0.452 Sum_probs=55.8
Q ss_pred EEEEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEE--e-ccCHHHHHHHHHHhcCCceEEe
Q 014728 160 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK--G-TVDITEVRSYIKDELKKDVVII 223 (419)
Q Consensus 160 tv~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVt--G-~vdp~~Llk~L~kktGk~aei~ 223 (419)
+..|+| ||+|.+|+..|+++ .+++||.++.||+..++++|+ + .++.+.|+.+|. .+||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 468999 99999999999999 999999999999999666665 5 689999999996 899988543
No 8
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.70 E-value=5.4e-08 Score=77.94 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=58.8
Q ss_pred CCceEEEEEEcccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEeecchhhHHHHHHHhhcccc
Q 014728 52 VADQLVTFILIVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKV 117 (419)
Q Consensus 52 ~~~~~vvlkVgM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g~vDpe~LveaL~~~~Gk~v 117 (419)
+..+..++.+.|||.+|+.+|++.|..+.||.++.+|...++++|.+.++|..+++.++...++..
T Consensus 2 ~~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~ 67 (73)
T KOG1603|consen 2 PPIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRA 67 (73)
T ss_pred CCccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCce
Confidence 346778899999999999999999999999999999999999999999999999999887433433
No 9
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.70 E-value=5.8e-08 Score=77.53 Aligned_cols=63 Identities=29% Similarity=0.186 Sum_probs=53.1
Q ss_pred eEEEEEE-cccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEe---ecchhhHHHHHHHhhccccc
Q 014728 55 QLVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTG---MVDPWKIQELVEKETKKKVE 118 (419)
Q Consensus 55 ~~vvlkV-gM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g---~vDpe~LveaL~~~~Gk~ve 118 (419)
....|.| +|+|.||+..|+++|..++||.++.+++..+++.|.. .++.+++.++++. +||.+.
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~-aGy~~~ 68 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED-AGYKVE 68 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHH-cCCCee
Confidence 4577888 7999999999999999999999999999997777765 3577788888876 677653
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.29 E-value=1.6e-06 Score=82.71 Aligned_cols=70 Identities=24% Similarity=0.223 Sum_probs=62.9
Q ss_pred CceEEEEEEcccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEeecchhhHHHHHHHhhcccccccccc
Q 014728 53 ADQLVTFILIVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPL 123 (419)
Q Consensus 53 ~~~~vvlkVgM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g~vDpe~LveaL~~~~Gk~veivs~~ 123 (419)
+..+++|.|.|+|++|+..|+..|..++||.++.+|++.+.+.|.++..+..+...|+. +|+.+.+....
T Consensus 5 ~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~-tGr~Avl~G~G 74 (247)
T KOG4656|consen 5 DTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLEN-TGRDAVLRGAG 74 (247)
T ss_pred CceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHh-hChheEEecCC
Confidence 35678999999999999999999999999999999999999999998888889888876 88888776543
No 11
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.22 E-value=3.3e-06 Score=80.59 Aligned_cols=64 Identities=19% Similarity=0.476 Sum_probs=59.9
Q ss_pred eEEEEEecCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEeccCHHHHHHHHHHhcCCceEEe
Q 014728 159 GTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 223 (419)
Q Consensus 159 ~tv~LkVGM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG~vdp~~Llk~L~kktGk~aei~ 223 (419)
-+.+|.|.|+|++|+..|+.. ..++||.+|+||+.++.|.|.+.+.++.|...|+ .+|++|-|.
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~ 71 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLR 71 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEe
Confidence 467899999999999999999 9999999999999999999999999999999996 799999665
No 12
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.06 E-value=1.4e-05 Score=89.50 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=80.5
Q ss_pred eEEEEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEeccCHHHHHHHHHHhcCCceEEeccccccCCCCC-C
Q 014728 159 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVIIFPAEVVIPTKK-D 235 (419)
Q Consensus 159 ~tv~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG~vdp~~Llk~L~kktGk~aei~~p~e~vp~~~~-~ 235 (419)
++++|.| ||+|.+|+.+|+++ .+++||.++.||+. +.+|++..+++.+...++ .+||.+++..+.+. |-... .
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~~~~~-~~~~~~~ 78 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASVSHPKAK-PLTESSI 78 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCcccccccccc-ccccccc
Confidence 3678999 99999999999999 99999999999994 566767788999999996 89999976521110 00000 0
Q ss_pred Cc---hhhhccCCCCcc-CCCCccccccCCCCCCchhhHHHHHhhccceecccccCccccc
Q 014728 236 DG---AAYKKEKDAGTT-RKKDRDDKATNKKDDGNNATIDKKYRGAITVYEKFEGPSMVYK 292 (419)
Q Consensus 236 ~~---~~~~kk~~~g~~-rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (419)
.+ ...++..+.... ....-.-.-..++|..|+..|.+.+.. ..+|+..+.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~----~~GV~~a~vnl~ 135 (834)
T PRK10671 79 PSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQS----VPGVTQARVNLA 135 (834)
T ss_pred CchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhc----CCCceeeeeecC
Confidence 00 000000000000 000001124488999999998887766 677766655443
No 13
>PLN02957 copper, zinc superoxide dismutase
Probab=97.65 E-value=0.00025 Score=68.85 Aligned_cols=64 Identities=14% Similarity=0.407 Sum_probs=57.3
Q ss_pred eEEEEEecCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEeccCHHHHHHHHHHhcCCceEEe
Q 014728 159 GTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVII 223 (419)
Q Consensus 159 ~tv~LkVGM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG~vdp~~Llk~L~kktGk~aei~ 223 (419)
.++.+.++|+|.+|+.+|+++ .+++||.++.+|+..++++|.....+..++..|+ .+||.++++
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~ 70 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLI 70 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEe
Confidence 456788899999999999999 9999999999999999999987778888999996 899998655
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00019 Score=79.79 Aligned_cols=59 Identities=14% Similarity=0.373 Sum_probs=52.8
Q ss_pred EEEEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEE---eccC-HHHHHHHHHHhcCCce
Q 014728 160 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK---GTVD-ITEVRSYIKDELKKDV 220 (419)
Q Consensus 160 tv~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVt---G~vd-p~~Llk~L~kktGk~a 220 (419)
+..|.| ||||++|+++|| + .+++||..+.||+.+++++|. +..+ ++.+...++ .+||.+
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~ 67 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSA 67 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccc
Confidence 457999 999999999999 9 999999999999999999997 3355 788999996 799987
No 15
>PLN02957 copper, zinc superoxide dismutase
Probab=97.22 E-value=0.0012 Score=64.08 Aligned_cols=67 Identities=25% Similarity=0.284 Sum_probs=55.7
Q ss_pred ceEEEEEEcccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEeecchhhHHHHHHHhhcccccccc
Q 014728 54 DQLVTFILIVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIF 121 (419)
Q Consensus 54 ~~~vvlkVgM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g~vDpe~LveaL~~~~Gk~veivs 121 (419)
-+.+.|.++|+|.+|+.+|++.|.+++||..+.+++..++++|.+...+..+...++. .|+.++++.
T Consensus 5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~-~Gy~a~~~~ 71 (238)
T PLN02957 5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQ-TGRKARLIG 71 (238)
T ss_pred cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHH-cCCcEEEec
Confidence 4566788899999999999999999999999999999999999875566667777765 677665443
No 16
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.00 E-value=0.0057 Score=42.51 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=48.8
Q ss_pred EEEEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEe---ccCHHHHHHHHHHhcCCce
Q 014728 160 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG---TVDITEVRSYIKDELKKDV 220 (419)
Q Consensus 160 tv~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG---~vdp~~Llk~L~kktGk~a 220 (419)
+..+.| +|+|..|+..+++. ..++++..+.+++....+.+.- ..+...+...+. ..|+.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCCc
Confidence 456889 99999999999999 9999999999999999988862 345666766664 567643
No 17
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0039 Score=69.52 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=49.5
Q ss_pred eEEEEEE-cccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEee---cc-hhhHHHHHHHhhcccc
Q 014728 55 QLVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGM---VD-PWKIQELVEKETKKKV 117 (419)
Q Consensus 55 ~~vvlkV-gM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g~---vD-pe~LveaL~~~~Gk~v 117 (419)
....|.+ +|+|+.|+.+|+ +|.+++||..+.+|+.++++.|.+. .+ ++.+...++. .||.+
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~-~gy~~ 67 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEK-AGYSA 67 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHh-cCccc
Confidence 3567888 799999999999 9999999999999999999999873 23 4556666655 56654
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=95.06 E-value=0.098 Score=36.10 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=38.4
Q ss_pred EEEEEE-cccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEe
Q 014728 56 LVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTG 98 (419)
Q Consensus 56 ~vvlkV-gM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g 98 (419)
...+.+ +|+|..|+..++..+...+++....+++....+.+..
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEF 46 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEe
Confidence 456788 6999999999999999999999999999999988875
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=94.98 E-value=0.061 Score=60.31 Aligned_cols=60 Identities=18% Similarity=0.389 Sum_probs=49.1
Q ss_pred eEEEEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEE--eccCHHHHHHHHHHhcCCce
Q 014728 159 GTYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK--GTVDITEVRSYIKDELKKDV 220 (419)
Q Consensus 159 ~tv~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVt--G~vdp~~Llk~L~kktGk~a 220 (419)
.++.+.+ ||+|.+|+.++++. .+++||.++.+++.++++.|. .... ..+...++ .+||.+
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~-~~I~~aI~-~~Gy~a 116 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIR-AQVESAVQ-KAGFSL 116 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccch-HHHHHHHH-hccccc
Confidence 4667889 99999999999999 999999999999999998886 2222 56666665 688876
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=88.73 E-value=0.77 Score=51.65 Aligned_cols=45 Identities=24% Similarity=0.173 Sum_probs=40.1
Q ss_pred ceEEEEEE-cccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEe
Q 014728 54 DQLVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTG 98 (419)
Q Consensus 54 ~~~vvlkV-gM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g 98 (419)
.....+.+ +|+|.+|+..++..+..++||..+.+++.++++.+.+
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~ 97 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDA 97 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEe
Confidence 44566778 6999999999999999999999999999999988875
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=85.46 E-value=7.9 Score=29.61 Aligned_cols=62 Identities=11% Similarity=0.307 Sum_probs=45.4
Q ss_pred EEEEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEE---eccCHHHHHHHHHHhcCCceEE
Q 014728 160 TYVMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK---GTVDITEVRSYIKDELKKDVVI 222 (419)
Q Consensus 160 tv~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVt---G~vdp~~Llk~L~kktGk~aei 222 (419)
++.+.+ +++|..|...++.. ...+|+..+.+++....+.+. +..+...+...+. ..|+.++|
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 90 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSSL 90 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeEe
Confidence 345778 99999999999999 999999999999888876664 1235555555553 56766543
No 22
>PRK13748 putative mercuric reductase; Provisional
Probab=66.69 E-value=22 Score=38.10 Aligned_cols=61 Identities=15% Similarity=0.347 Sum_probs=46.8
Q ss_pred EEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEe--ccCHHHHHHHHHHhcCCceEEe
Q 014728 162 VMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKG--TVDITEVRSYIKDELKKDVVII 223 (419)
Q Consensus 162 ~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG--~vdp~~Llk~L~kktGk~aei~ 223 (419)
.+.+ +|+|.+|..+++.. ..++|+..+.+++..+.+.+.. ..+...+...+. ..|+.++.+
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~ 67 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLA 67 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeecc
Confidence 3567 99999999999999 9999999999999998877762 234555656664 577766444
No 23
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=65.76 E-value=28 Score=21.16 Aligned_cols=35 Identities=29% Similarity=0.618 Sum_probs=29.8
Q ss_pred cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEE
Q 014728 166 KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVK 200 (419)
Q Consensus 166 GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVt 200 (419)
++.|..|...++.. ...+|+....+++......+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 88999999999988 888998888888877766554
No 24
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=56.77 E-value=45 Score=25.27 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=33.6
Q ss_pred EEEEEE-cccChhHHHHHHHHhhcCCCceEEEeecCCceEEEE
Q 014728 56 LVTFIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVT 97 (419)
Q Consensus 56 ~vvlkV-gM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~ 97 (419)
.+.+.+ +++|.+|...++..+...+++....+++......+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVT 66 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEE
Confidence 344556 699999999999999999998888888877765554
No 25
>PF09510 Rtt102p: Rtt102p-like transcription regulator protein; InterPro: IPR018304 Rtt102p (Regulator of Ty1 Transposition Protein 102) is a transcription regulator protein found in fungi that appears to be integrally associated with both the Swi-Snf and the RSC chromatin remodelling complexes, []. RSC is involved in transcription regulation and nucleosome positioning, and is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodelling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signalling pathway, for organisation of the cellular cytoskeleton. It is a probable component of the SWI/SNF complex, an ATP-dependent chromatin-remodelling complex, is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Probab=48.18 E-value=12 Score=33.78 Aligned_cols=31 Identities=32% Similarity=0.592 Sum_probs=26.8
Q ss_pred CccccCCCceecccCCccccccccccCcccc
Q 014728 369 SVMRNENPKTYLNYDGRKVNNEYDYYSPLKY 399 (419)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (419)
|+|+.-|--.|++-...++.=+||+|+|.|-
T Consensus 1 sli~~AN~~~y~~~~~~~~~W~yDWytP~k~ 31 (130)
T PF09510_consen 1 SLIERANKSGYGNSADKKIHWKYDWYTPSKS 31 (130)
T ss_pred ChhHhccccccccCCCCceeeEEeccccccc
Confidence 5677888888998888889999999999983
No 26
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=45.00 E-value=35 Score=26.56 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=21.9
Q ss_pred eEEEEEEcccChhHH------HHHHHHhhcCCCceEEEe
Q 014728 55 QLVTFILIVHGYSYV------NGVELFVKQIEGVKRVKG 87 (419)
Q Consensus 55 ~~vvlkVgM~CagCA------~KIekaLskL~GV~sV~V 87 (419)
..+.|.+.++.++|. ..|+.+|..++||.+++|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 455566656555554 568889999999998875
No 27
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=33.41 E-value=76 Score=24.64 Aligned_cols=32 Identities=19% Similarity=0.532 Sum_probs=21.0
Q ss_pred eEEEEEecCCChhH------HHHHHhh-hcCCCeeEEEe
Q 014728 159 GTYVMKIKLCCDSC------NQKLRKI-MKIKGLETVNM 190 (419)
Q Consensus 159 ~tv~LkVGM~CagC------a~kIeka-~~l~GV~sV~V 190 (419)
.++.+.+-+..++| ...|+++ ..++||.+|+|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 35566665555555 4677888 99999999986
No 28
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=29.96 E-value=1.5e+02 Score=24.29 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=44.6
Q ss_pred cchhhhhhhhhhhhhhhhccccccCCCccccCcccHHHHhhhhcCCCCceEEEEEEcccChhHHHHHHHHhhcCCCceEE
Q 014728 6 KGVYSEILDSVLNRVVAEEALELDSPSDSVTNSNSAQVINKAISNKVADQLVTFILIVHGYSYVNGVELFVKQIEGVKRV 85 (419)
Q Consensus 6 ~g~~~~~~~~~L~~~~~~~a~el~s~~~~vt~~~~~~~i~~~~e~~~~~~~vvlkVgM~CagCA~KIekaLskL~GV~sV 85 (419)
.||+..++|+.=-|=--+.+|.+..... +....+++.++ -..+...|.+.|.++..|..+
T Consensus 14 pGVL~Ri~~lf~rRGfnI~sl~v~~t~~------------------~~~sriti~v~--~~~~i~ql~kQL~KL~dV~~V 73 (76)
T PRK11152 14 PEVLERVLRVVRHRGFQVCSMNMTQNTD------------------AQNINIELTVA--SERPIDLLSSQLNKLVDVAHV 73 (76)
T ss_pred ccHHHHHHHHHhcCCeeeeeEEeeecCC------------------CCEEEEEEEEC--CCchHHHHHHHHhcCcCeEEE
Confidence 5788887777666666666666444322 34566667764 588889999999999999888
Q ss_pred Ee
Q 014728 86 KG 87 (419)
Q Consensus 86 ~V 87 (419)
.+
T Consensus 74 ~~ 75 (76)
T PRK11152 74 EI 75 (76)
T ss_pred EE
Confidence 75
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=29.79 E-value=1e+02 Score=33.00 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=34.5
Q ss_pred EEE-cccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEe
Q 014728 59 FIL-IVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTG 98 (419)
Q Consensus 59 lkV-gM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g 98 (419)
+.+ +|+|.+|...++..+...+++....+++......+..
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~ 44 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAI 44 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEE
Confidence 445 6999999999999999999999999999888877663
No 30
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=29.00 E-value=2.6e+02 Score=28.58 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=56.1
Q ss_pred EEEEEEcccChhHHHHHHHHhhcCCCceEEEeecCCceEEEEeecchhhHHHHHHHhhcccccccccchhhhhhccccch
Q 014728 56 LVTFILIVHGYSYVNGVELFVKQIEGVKRVKGDSNSIKLEVTGMVDPWKIQELVEKETKKKVELIFPLTQMAAKRVDNQI 135 (419)
Q Consensus 56 ~vvlkVgM~CagCA~KIekaLskL~GV~sV~VDlatkkVtV~g~vDpe~LveaL~~~~Gk~veivs~~p~~~~~~~~~~~ 135 (419)
.+.+..+.+ ..|+..++..+.+++||.++++ .+.++..+.++...|.. .... . +
T Consensus 62 ~vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg~~-~~~~-l--------~--- 115 (297)
T COG2177 62 TVYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLGFG-ALLM-L--------D--- 115 (297)
T ss_pred EEEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcCch-hhhc-C--------C---
Confidence 344444555 8999999999999999998884 35666666666655532 1000 0 0
Q ss_pred hHHHHHhhhccCcCCCCCCCCcceEEEEEecCCChhHHHHHHhh-hcCCCeeEEEee
Q 014728 136 SEEKLKRKKKIHRNDIGSKQTEEGTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMD 191 (419)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~k~~~~tv~LkVGM~CagCa~kIeka-~~l~GV~sV~VN 191 (419)
++| -...+.+.+ +-+.-...+.++ +.++||.+|.-+
T Consensus 116 -----------~nP-------LP~~~vV~~--~~p~~~~~i~~~l~~l~gV~~V~~~ 152 (297)
T COG2177 116 -----------ENP-------LPDVFVVTP--DDPPQVKAIAAALRDLPGVAEVDDD 152 (297)
T ss_pred -----------CCC-------CCceEEEEe--CCCccHHHHHHHHHcCccceehhcc
Confidence 011 012233333 225566788888 999999998864
No 31
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=28.73 E-value=2.3e+02 Score=28.94 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=40.1
Q ss_pred eEEEEEecCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEeccCHHHHHHHHHHhcCCc
Q 014728 159 GTYVMKIKLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKD 219 (419)
Q Consensus 159 ~tv~LkVGM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG~vdp~~Llk~L~kktGk~ 219 (419)
.++.+.+..+ ..|...+++. .+++||.+++. .+.++-++.+++..|..
T Consensus 61 i~vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg~~ 109 (297)
T COG2177 61 ITVYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLGFG 109 (297)
T ss_pred EEEEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcCch
Confidence 3556666777 9999999999 99999999885 57888899998888975
No 32
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=26.70 E-value=1e+02 Score=29.12 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=22.7
Q ss_pred hHHHHHHhh-hcCCCeeEEEeecCCCE
Q 014728 171 SCNQKLRKI-MKIKGLETVNMDVQEDL 196 (419)
Q Consensus 171 gCa~kIeka-~~l~GV~sV~VNla~~k 196 (419)
||=+.++.. .+++||.++.+-++++.
T Consensus 11 GCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 11 GCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred CChhhhHHHHccCCCEEEEEeeecCCC
Confidence 577888889 99999999999998775
No 33
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=24.04 E-value=2e+02 Score=22.05 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=34.5
Q ss_pred EEEe-cCCChhHHHHHHhh-hcCCCeeEEEeecCCCEEEEEeccCHHHHHHHHHHhcCCce
Q 014728 162 VMKI-KLCCDSCNQKLRKI-MKIKGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDV 220 (419)
Q Consensus 162 ~LkV-GM~CagCa~kIeka-~~l~GV~sV~VNla~~kVtVtG~vdp~~Llk~L~kktGk~a 220 (419)
+|.+ |+.|+...-++.++ .+++.-..+.| .+.......+|...++ ..|+.+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G~~l~v-------~~d~~~~~~di~~~~~-~~g~~~ 54 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPGEVLEV-------LVDDPAAVEDIPRWCE-ENGYEV 54 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT-EEEE-------EESSTTHHHHHHHHHH-HHTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCCCEEEE-------EECCccHHHHHHHHHH-HCCCEE
Confidence 5777 99999999999999 88744333332 2222334577888885 799974
No 34
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=22.29 E-value=3.4e+02 Score=22.92 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=44.3
Q ss_pred cchhhhhhhhhhhhhhhhccccccCCCccccCcccHHHHhhhhcCCCCceEEEEEEcccChhHHHHHHHHhhcCCCceEE
Q 014728 6 KGVYSEILDSVLNRVVAEEALELDSPSDSVTNSNSAQVINKAISNKVADQLVTFILIVHGYSYVNGVELFVKQIEGVKRV 85 (419)
Q Consensus 6 ~g~~~~~~~~~L~~~~~~~a~el~s~~~~vt~~~~~~~i~~~~e~~~~~~~vvlkVgM~CagCA~KIekaLskL~GV~sV 85 (419)
.||+..+.++.--|-.-+.++.+...- .+....+++.+......=...|.+.|.++..|..+
T Consensus 13 ~GVL~Rit~lFsRRg~NI~SLtvg~Te------------------~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV 74 (84)
T PRK13562 13 VSTLNRITSAFVRLQYNIDTLHVTHSE------------------QPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTV 74 (84)
T ss_pred CCHHHHHHHHHhccCcCeeeEEecccC------------------CCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEE
Confidence 588888877777777777777644433 25566666666546667777888899999888776
Q ss_pred E
Q 014728 86 K 86 (419)
Q Consensus 86 ~ 86 (419)
.
T Consensus 75 ~ 75 (84)
T PRK13562 75 E 75 (84)
T ss_pred E
Confidence 6
No 35
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.71 E-value=3.5e+02 Score=20.35 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=24.1
Q ss_pred eEEEEEEcccChh-HHHHHHHHhhcCCCceEEEe
Q 014728 55 QLVTFILIVHGYS-YVNGVELFVKQIEGVKRVKG 87 (419)
Q Consensus 55 ~~vvlkVgM~Cag-CA~KIekaLskL~GV~sV~V 87 (419)
..+.|.+...-.. --..|-+.|.+++||.++.+
T Consensus 41 ~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 41 ANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 4455555555554 66788899999999998874
No 36
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=20.21 E-value=2.4e+02 Score=21.99 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=24.0
Q ss_pred ceEEEEEEcccChhHHHHHHHHhhcCCCceEEE
Q 014728 54 DQLVTFILIVHGYSYVNGVELFVKQIEGVKRVK 86 (419)
Q Consensus 54 ~~~vvlkVgM~CagCA~KIekaLskL~GV~sV~ 86 (419)
...+.|.+...-..=-..|-..|.+++||.+|.
T Consensus 47 ~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 47 TARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 556666666665555567788899999998875
Done!