BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014729
(419 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03976|RT24_YEAST 37S ribosomal protein S24, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RSM24 PE=1
SV=1
Length = 319
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 252 EVVAEYMKQVETEEPPKYDFPAVPDTKKDIDDP-PGEGPILRWVTRAVFAPGGDAWHPKN 310
E+VA++ +Q Y+ P + +++ P P P+ T V G+ HP +
Sbjct: 143 ELVAQHREQRFYNRLAAYELPLLAQYRQEYKRPSPESHPVTYRYTSYV----GEE-HPNS 197
Query: 311 RKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370
RKV +SV KELGL + + R L RY D ++S++FEH +N + L
Sbjct: 198 RKVVLSVKTKELGLEEKSLHKFRILARSRYDHTTDIFKMSSDKFEHASQNARYLHDILQR 257
Query: 371 LIEEA 375
L+ E+
Sbjct: 258 LLAES 262
>sp|Q8BJZ4|RT35_MOUSE 28S ribosomal protein S35, mitochondrial OS=Mus musculus GN=Mrps35
PE=2 SV=2
Length = 320
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 302 GGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENR 361
G +PK R V + V + L L + ++L +LVG+RY D LTIT++R + +N
Sbjct: 157 GPSIRNPKARAVTLRVKLSSLNLDNHAKKKLIKLVGERYCKATDVLTITTDRCPLKRQNY 216
Query: 362 KDCLRTLFSLIEEAGK 377
+ L L E+ K
Sbjct: 217 DYAVYLLTVLYHESWK 232
>sp|Q54WN8|Y7952_DICDI Uncharacterized protein DDB_G0279527 OS=Dictyostelium discoideum
GN=DDB_G0279527 PE=1 SV=1
Length = 1233
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 304 DAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKD 363
D+W NRK + V + LSK RL +L RY P K LT+ + + EN+ +
Sbjct: 1096 DSW--VNRKAVLKVNISAFNLSKTVQDRLAQLTANRYDPQKKVLTLVANNHKTLPENKYE 1153
Query: 364 CLRTLFSLIEEAGKAN 379
R L+ EA A+
Sbjct: 1154 VKRLFKELLHEASLAD 1169
>sp|Q09705|RT24_SCHPO 37S ribosomal protein S24, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rsm24 PE=3 SV=1
Length = 258
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 310 NRKVKMSVTVKELGLSKYQFRR-LRELVGKRYHPGKDELTITSERFEHREENRKDCLRTL 368
N KV ++ V + L + + R LR LVG RY+P +D + I+S+++ +N+ ++ L
Sbjct: 128 NPKVVVTFKVTNIPLLEEKQRHVLRLLVGPRYNPEEDLVRISSDKYSSALQNKYHLIKIL 187
Query: 369 FSLIEEAGK 377
SLIEE+ +
Sbjct: 188 TSLIEESKR 196
>sp|Q2YDF6|RT35_BOVIN 28S ribosomal protein S35, mitochondrial OS=Bos taurus GN=MRPS35
PE=1 SV=1
Length = 325
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 299 FAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHRE 358
+ G +PK R V + V + L L + ++L +LVG RY D LTI ++R +
Sbjct: 159 ISSGPSIRNPKARVVTLRVKLSSLNLDDHAKKKLIKLVGDRYCKSTDVLTIKTDRCPLKR 218
Query: 359 ENRKDCLRTLFSLIEEAGKA 378
+N + L L E+ K
Sbjct: 219 QNYDYAMYLLTVLYHESWKT 238
>sp|P82673|RT35_HUMAN 28S ribosomal protein S35, mitochondrial OS=Homo sapiens GN=MRPS35
PE=1 SV=1
Length = 323
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 302 GGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENR 361
G +P+ R V + V + L L + ++L +LVG+RY D LTI ++R R +N
Sbjct: 160 GPSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNY 219
Query: 362 KDCLRTLFSLIEEA 375
+ L L E+
Sbjct: 220 DYAVYLLTVLYHES 233
>sp|Q68WS8|LON_RICTY Lon protease OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington)
GN=lon PE=3 SV=1
Length = 784
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 101 SILEAILQRRLVGKHEETDDELTEELRLKPLDDVKDQE-FESDFEELYATDEEIDDLYSA 159
+IL I+Q +V T L E + L D+KD+E FE+++E + DEEI D+++
Sbjct: 71 AILAKIIQ--IVKLPNNTAKILIEAVARVKLSDIKDEESFEANYEII--PDEEILDMHNM 126
Query: 160 RDHVVKKMVKDEYFNMDDKKWDEMIGEAVQ 189
R V + + M+DKK + I E +
Sbjct: 127 RSLVDNAVQLFNKYAMNDKKVNTEIIETIN 156
>sp|Q2SDJ2|SYT_HAHCH Threonine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396)
GN=thrS PE=3 SV=1
Length = 637
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 183 MIGEAVQHGYLKDTRECEEILEDMLSWD-----KLLPDDMKKKVEQKFNELGDM---CES 234
++ AVQ + ++ED +D PDD+ K +E+K EL D
Sbjct: 78 LLAMAVQSIFPSAQVTIGPVIEDGFYYDFAFERPFTPDDLVK-IEEKMQELSDADLPVTR 136
Query: 235 GELEPEQAYELFKKFEDEVVAEYMKQVETEEPPKY----DF------PAVPDTKK 279
+ +A ELFKK +E E + + TEE + DF P VP T K
Sbjct: 137 SLMSRSEAVELFKKMGEEYKVEIIASIPTEENLSFYSQGDFIDLCRGPHVPSTGK 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,449,298
Number of Sequences: 539616
Number of extensions: 7809901
Number of successful extensions: 22973
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 22739
Number of HSP's gapped (non-prelim): 474
length of query: 419
length of database: 191,569,459
effective HSP length: 120
effective length of query: 299
effective length of database: 126,815,539
effective search space: 37917846161
effective search space used: 37917846161
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)